BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016629
(386 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359484387|ref|XP_002281678.2| PREDICTED: uncharacterized protein LOC100245744 [Vitis vinifera]
Length = 399
Score = 334 bits (857), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 191/337 (56%), Positives = 244/337 (72%), Gaps = 20/337 (5%)
Query: 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRS 92
+MTIDD++S+YVGGLPY+A EDS+RKVF+ YG++VAVKI+N+R GKCYGFVTF NPRS
Sbjct: 52 EMTIDDDNSIYVGGLPYNATEDSIRKVFNLYGAIVAVKIINERGVGGKCYGFVTFTNPRS 111
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDR---- 148
A+DAINDMNGR IDGR+V V+EV TRG +SN GR+ FR + +G D D R R+R
Sbjct: 112 AIDAINDMNGRDIDGRIVVVNEVRTRGGRSNFGRESFRR-NSERGMDWDRGRDRERDYGH 170
Query: 149 YQDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSD--EDQGRDLENNDQGHT 206
+D + DR+ +R+ DR++ G +E RDHDR +RDRF D DQ RD+E+N+Q H+
Sbjct: 171 DKDHFRDRNIDRSRDHDRERERG--HERARDHDR--TRDRFMDRNRDQDRDMEDNEQEHS 226
Query: 207 RIHDPELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFSS 266
R HD +WER ++D RDRE++ T+D+ D KD S+KR+G R SS
Sbjct: 227 RNHDQ---DWERDHDIDWDRDREMNNTNDHDKSGD--KDEHSKKRNGGW----HSRGLSS 277
Query: 267 NSSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKK 326
+S D DQV+E+DRSIQRREEL+KEIS MEER+ K+QLVLDLQK+S KLE AL AKK
Sbjct: 278 DSDGDYHDQVEEVDRSIQRREELQKEISQMEERLEEKQQLVLDLQKKSLKLEGALTAAKK 337
Query: 327 LSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363
LSS RQ QLTKL++CF+QV E ERLKSCE+E Q +
Sbjct: 338 LSSQRQLQLTKLHRCFLQVKENTERLKSCEQELQTVL 374
>gi|297738892|emb|CBI28137.3| unnamed protein product [Vitis vinifera]
Length = 347
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 191/336 (56%), Positives = 243/336 (72%), Gaps = 20/336 (5%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
MTIDD++S+YVGGLPY+A EDS+RKVF+ YG++VAVKI+N+R GKCYGFVTF NPRSA
Sbjct: 1 MTIDDDNSIYVGGLPYNATEDSIRKVFNLYGAIVAVKIINERGVGGKCYGFVTFTNPRSA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDR----Y 149
+DAINDMNGR IDGR+V V+EV TRG +SN GR+ FR + +G D D R R+R
Sbjct: 61 IDAINDMNGRDIDGRIVVVNEVRTRGGRSNFGRESFRR-NSERGMDWDRGRDRERDYGHD 119
Query: 150 QDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSD--EDQGRDLENNDQGHTR 207
+D + DR+ +R+ DR++ G +E RDHDR +RDRF D DQ RD+E+N+Q H+R
Sbjct: 120 KDHFRDRNIDRSRDHDRERERG--HERARDHDR--TRDRFMDRNRDQDRDMEDNEQEHSR 175
Query: 208 IHDPELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFSSN 267
HD + WER ++D RDRE++ T+D+ D KD S+KR+G R SS+
Sbjct: 176 NHDQD---WERDHDIDWDRDREMNNTNDHDKSGD--KDEHSKKRNGGW----HSRGLSSD 226
Query: 268 SSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKL 327
S D DQV+E+DRSIQRREEL+KEIS MEER+ K+QLVLDLQK+S KLE AL AKKL
Sbjct: 227 SDGDYHDQVEEVDRSIQRREELQKEISQMEERLEEKQQLVLDLQKKSLKLEGALTAAKKL 286
Query: 328 SSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363
SS RQ QLTKL++CF+QV E ERLKSCE+E Q +
Sbjct: 287 SSQRQLQLTKLHRCFLQVKENTERLKSCEQELQTVL 322
>gi|224142105|ref|XP_002324399.1| predicted protein [Populus trichocarpa]
gi|222865833|gb|EEF02964.1| predicted protein [Populus trichocarpa]
Length = 353
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 169/352 (48%), Positives = 221/352 (62%), Gaps = 27/352 (7%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
MTIDD+ S+Y+GGLPY+A+ED++R+VF+ YGS+VAVKI+N+ T GKCYGFVTF NPRS
Sbjct: 1 MTIDDDRSIYIGGLPYNASEDTLRRVFNLYGSIVAVKIINNHGTSGKCYGFVTFRNPRSV 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSN-SGRDQFRHGHRHKGRDRDNNRHRDRYQDR 152
+DAINDMNG+TIDGRVVRV+ V +R KSN +G D H R + R R+ + DR++
Sbjct: 61 IDAINDMNGKTIDGRVVRVNGVTSRSGKSNFTGEDIRSHVERGRERGRERDYDHDRHRQW 120
Query: 153 YNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQG--RDLENNDQGHTRIHD 210
+NDRSRER S D+ R YEH R HDR +RD F D+ R+LENN+Q D
Sbjct: 121 HNDRSRERDRSWGYDEDSERGYEHARLHDR--ARDGFYGRDRSRERELENNEQEKEWKSD 178
Query: 211 PELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDG-------STVDDHQLRE 263
N ER +LD RD E+ GT+ TIVD+ D SRK +G S D H++
Sbjct: 179 ---RNKERGHDLDGDRDWEMGGTNGNPTIVDKASDQNSRKLNGTLSVLLRSLPDTHKMDP 235
Query: 264 FSSNSSDDN---SDQVKELDRSI---------QRREELKKEISHMEERVNVKEQLVLDLQ 311
+ + S++ L+ I L ++SHMEER+ K+Q V DLQ
Sbjct: 236 MGNYHCGTHFYVSEKAICLEYIIIFLPCIRFSLSSYVLAYQVSHMEERLENKQQFVSDLQ 295
Query: 312 KRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363
K++ LE AL+ AKKLSS R+ QLTKL KCF+QV EY RLKSCE+E +V+
Sbjct: 296 KKALILEGALLTAKKLSSQRRMQLTKLQKCFLQVKEYTNRLKSCEQELKVTF 347
>gi|449443125|ref|XP_004139331.1| PREDICTED: uncharacterized protein LOC101205569 [Cucumis sativus]
Length = 346
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 168/354 (47%), Positives = 233/354 (65%), Gaps = 42/354 (11%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
MT+DD+SS+YVGGLPY A EDS+R++FD YG+VVAVKI+NDRSTRGKCYGFVTF NPRSA
Sbjct: 1 MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATR--------GRKSNSGRD------------QFRHGH 133
+DAI DM+GRTI+GRVVRV+ V +R G + ++ RD +
Sbjct: 61 IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
Query: 134 RHKGRDRDNNRHRDRYQDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDED 193
RH+GR+ D +R +DRSRE D DK G Y+H DRD RD+F D +
Sbjct: 121 RHRGRNNDWSRD--------HDRSRE----HDLDKERG--YKH--SQDRDLPRDQFLDRE 164
Query: 194 QGRDLENNDQGHTRIHDPEL---ANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRK 250
+LE + + ++HD +L +WE+ D++ R ID TDDY +D +D + R+
Sbjct: 165 P--ELEKTSKDNEKVHDLKLNHDQDWEKDHGADLSGGRGIDKTDDYDKSLDNDRDQVLRR 222
Query: 251 RDGSTVDDHQLREFSSNSSDDNSDQVKE-LDRSIQRREELKKEISHMEERVNVKEQLVLD 309
+G T++ R+ SS+SSDD ++KE L+ S +R EEL+KE+S +EER KE+LV++
Sbjct: 223 DNGLTIEGRTARDLSSDSSDDYIHELKEQLEISTERLEELRKEVSQIEERSGEKEKLVVE 282
Query: 310 LQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363
LQK++KKLE+ALI+AKK SS RQ QL KL+K F+ V +Y++RLK+ E+E Q +
Sbjct: 283 LQKKAKKLEDALISAKKRSSFRQTQLIKLHKSFLLVKDYSKRLKTSEQELQALV 336
>gi|18420085|ref|NP_568388.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|20260444|gb|AAM13120.1| glycine-rich RNA-binding protein, putative [Arabidopsis thaliana]
gi|28059296|gb|AAO30045.1| glycine-rich RNA-binding protein, putative [Arabidopsis thaliana]
gi|332005391|gb|AED92774.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 337
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 153/338 (45%), Positives = 208/338 (61%), Gaps = 29/338 (8%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
MT+DD +SVYVGGLPY E++VR+VF YGSV+ VKIVNDRS RGKCYGFVTF N RSA
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRD-RYQ-D 151
DAI DM+G++I GR VRV++V TRG + N G + + H G DR +R D Y+ D
Sbjct: 61 DDAIEDMDGKSIGGRAVRVNDVTTRGGRMNPGPGRLQP---HGGWDRSPDRRSDGNYERD 117
Query: 152 RYNDRSRERTSSQDRDKG-----MGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHT 206
RY+DRSRER SQDR K R YEH D +R D+ + +
Sbjct: 118 RYSDRSRERDRSQDRRKDHRYIEKERAYEHSHDFERRND----------HDMVDRNGYKE 167
Query: 207 RIHDPELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFSS 266
R+ D + +W R + R I+GT + EG+ +++ D + +D + R+ S
Sbjct: 168 RVFDGDEGDW-RGDRSYVDNGRGINGTSAH-----EGRSQETKREDSTILDGGRGRDHFS 221
Query: 267 NSSDDNSDQVKE-LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325
NSS D+ QVKE L+ I+ RE L+ E+ MEER+ VKE + +LQK+SK+LE+ LIN K
Sbjct: 222 NSSGDH--QVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLINEK 279
Query: 326 KLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363
KL S R+K+L KL+K + +V E + LK CE+E Q+ +
Sbjct: 280 KLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLV 317
>gi|21553602|gb|AAM62695.1| glycine-rich RNA-binding protein-like [Arabidopsis thaliana]
Length = 337
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 153/338 (45%), Positives = 208/338 (61%), Gaps = 29/338 (8%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
MT+DD +SVYVGGLPY E++VR+VF YGSV+ VKIVNDRS RGKCYGFVTF N RSA
Sbjct: 1 MTMDDGNSVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRD-RYQ-D 151
DAI DM+G++I GR VRV++V TRG + N G + + H G DR +R D Y+ D
Sbjct: 61 DDAIEDMDGKSIGGRAVRVNDVTTRGGRMNLGPGRLQP---HGGWDRSPDRRSDGNYERD 117
Query: 152 RYNDRSRERTSSQDRDKG-----MGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHT 206
RY+DRSRER SQDR K R YEH D +R D+ + +
Sbjct: 118 RYSDRSRERDRSQDRRKDHRYIEKERAYEHSHDFERRND----------HDMVDRNGYKE 167
Query: 207 RIHDPELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFSS 266
R+ D + +W R + R I+GT + EG+ +++ D + +D + R+ S
Sbjct: 168 RVFDGDEGDW-RGDRSYVDNGRGINGTSAH-----EGRSQETKREDSTILDGGRGRDHFS 221
Query: 267 NSSDDNSDQVKE-LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325
NSS D+ QVKE L+ I+ RE L+ E+ MEER+ VKE + +LQK+SK+LE+ LIN K
Sbjct: 222 NSSGDH--QVKEDLEALIKMREALRDEVMVMEERLEVKEVVCSELQKKSKRLEDLLINEK 279
Query: 326 KLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363
KL S R+K+L KL+K + +V E + LK CE+E Q+ +
Sbjct: 280 KLVSQRRKELAKLHKSYSRVRECTDNLKDCEQELQLLV 317
>gi|297808057|ref|XP_002871912.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|297317749|gb|EFH48171.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
Length = 335
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 151/342 (44%), Positives = 209/342 (61%), Gaps = 28/342 (8%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
MTIDD +SVYVGGLPY E++VR+VF YG+++ VKIVNDRS RGKCYGFVTF N RSA
Sbjct: 1 MTIDDGNSVYVGGLPYDITEEAVRRVFSIYGTILTVKIVNDRSVRGKCYGFVTFSNRRSA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFR-HGHRHKGRDRDNNRHRDRYQDR 152
DAI DM+G++I GR VRV++V TRG + N G + + HG + DR +N + DR DR
Sbjct: 61 DDAIEDMDGKSIGGRAVRVNDVTTRGGRMNPGPGRLQPHGGWDRSPDRRSNGNYDR--DR 118
Query: 153 YNDRSRERTSSQDRDKGM-----GREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTR 207
Y+DRSRER SQDR K R YEH D +R DL + + R
Sbjct: 119 YSDRSRERDRSQDRRKDHRYTENERAYEHSHDFERRND----------HDLLDRNGYKER 168
Query: 208 IHDPELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFSSN 267
+ + + +W R R I+GT + EG+ +++ D + +D + R+ SN
Sbjct: 169 VFEGDEGDW-RGDRSFGDNGRGINGTSAH-----EGRSQETKRDDSTILDGGRGRDHFSN 222
Query: 268 SSDDNSDQVKE-LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKK 326
SS D QVKE L+ I+ RE L+ E+ MEER++ KE + +LQK+SK+LE+ LIN KK
Sbjct: 223 SSGDQ--QVKEDLEALIKMREALQDEVLVMEERLDEKEVVCSELQKKSKRLEDLLINEKK 280
Query: 327 LSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368
L + R+K+L KL++ F +V E + LK C++E Q S+ N +
Sbjct: 281 LVAQRRKELAKLHESFSRVRECTDNLKDCQQELQ-SLVNSAA 321
>gi|147843908|emb|CAN83717.1| hypothetical protein VITISV_017075 [Vitis vinifera]
Length = 216
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/226 (53%), Positives = 162/226 (71%), Gaps = 16/226 (7%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
MTIDD++S+YVGGLPY+A EDS+RKVF+ YG++VAVKI+N+R GKCYGFVTF NPRSA
Sbjct: 1 MTIDDDNSIYVGGLPYNATEDSIRKVFNLYGAIVAVKIINERGVGGKCYGFVTFTNPRSA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDR----Y 149
+DAINDMNGR IDGR+V V+EV TRG +SN GR+ FR + +G D D R R+R
Sbjct: 61 IDAINDMNGRDIDGRIVVVNEVRTRGGRSNFGRESFRR-NSERGMDWDRGRDRERDYGHD 119
Query: 150 QDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSD--EDQGRDLENNDQGHTR 207
+D + DR+ +R+ DR++ G +E RDHDR +RDRF D DQ RD+E+N+Q H+R
Sbjct: 120 KDHFRDRNIDRSRDHDRERERG--HERARDHDR--TRDRFMDRNRDQDRDMEDNEQEHSR 175
Query: 208 IHDPELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDG 253
HD + WER ++D RDRE++ T+D+ D KD S+KR+G
Sbjct: 176 NHDQD---WERDHDIDWDRDREMNNTNDHDKSGD--KDEHSKKRNG 216
>gi|413936816|gb|AFW71367.1| RNA-binding protein 25 [Zea mays]
Length = 329
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 196/335 (58%), Gaps = 43/335 (12%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
M +D+ +SVYVGGLPY ANE+ +R F YG++V+VK++ND + +GKCYGFVTF +PR+A
Sbjct: 1 MAVDEVNSVYVGGLPYEANEEMLRDAFGYYGTIVSVKVINDHAVKGKCYGFVTFTHPRAA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRD-----RDNNRHRDR 148
AI M+G+ + R+VRV+EV TRG + + GRD FR R GRD RD R DR
Sbjct: 61 EQAIAGMDGKKLGNRIVRVNEVRTRGPR-DFGRDGFRRDPRRYGRDPYWDRRDRERSYDR 119
Query: 149 YQDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRI 208
+D Y+DR +R+ DR+ R+YEH G R
Sbjct: 120 ERDPYHDRDSDRSREHDRE----RDYEH--------------------------GGFNRE 149
Query: 209 HDPELANWERKSELDMTRDREIDGTDDYHTI---VDEGKDHLSRKRDGSTVDDHQLREFS 265
D + +R E D R RE D T + H + D+ K+H+SRKR S
Sbjct: 150 IDYPM---DRDREGDERRPREHDRTAEMHNVDSDNDKDKEHVSRKRFSRPKGRDSRDLSS 206
Query: 266 SNSSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325
S+ N D +LD++IQ RE+L+ E++ ++++++ KEQ + DLQK+++KLE+ L+ A+
Sbjct: 207 SSDGLQN-DGKHQLDKTIQMREDLENEVNQIKDKISGKEQHIADLQKKAQKLEDELVAAR 265
Query: 326 KLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360
K+SS RQ +T LYK F+Q+ +Y +R+K+ E+ Q
Sbjct: 266 KVSSERQLAVTDLYKHFLQLQDYNDRVKTAEQRLQ 300
>gi|259490555|ref|NP_001158902.1| uncharacterized protein LOC100303796 [Zea mays]
gi|194702804|gb|ACF85486.1| unknown [Zea mays]
gi|413936817|gb|AFW71368.1| hypothetical protein ZEAMMB73_137394 [Zea mays]
Length = 327
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 195/335 (58%), Gaps = 45/335 (13%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
M +D+ +SVYVGGLPY ANE+ +R F YG++V+VK++ND + +GKCYGFVTF +PR+A
Sbjct: 1 MAVDEVNSVYVGGLPYEANEEMLRDAFGYYGTIVSVKVINDHAVKGKCYGFVTFTHPRAA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRD-----RDNNRHRDR 148
AI M+G+ + R+VRV+EV TRG + + GRD FR R GRD RD R DR
Sbjct: 61 EQAIAGMDGKKLGNRIVRVNEVRTRGPR-DFGRDGFRRDPRRYGRDPYWDRRDRERSYDR 119
Query: 149 YQDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRI 208
+D Y+DR +R+ DR+ R+YEH G R
Sbjct: 120 ERDPYHDRDSDRSREHDRE----RDYEH--------------------------GGFNRE 149
Query: 209 HDPELANWERKSELDMTRDREIDGTDDYHTI---VDEGKDHLSRKRDGSTVDDHQLREFS 265
D + +R E D R RE D T + H + D+ K+H+SRK D L S
Sbjct: 150 IDYPM---DRDREGDERRPREHDRTAEMHNVDSDNDKDKEHVSRKSRPKGRDSRDLSSSS 206
Query: 266 SNSSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325
+D Q LD++IQ RE+L+ E++ ++++++ KEQ + DLQK+++KLE+ L+ A+
Sbjct: 207 DGLQNDGKHQ---LDKTIQMREDLENEVNQIKDKISGKEQHIADLQKKAQKLEDELVAAR 263
Query: 326 KLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360
K+SS RQ +T LYK F+Q+ +Y +R+K+ E+ Q
Sbjct: 264 KVSSERQLAVTDLYKHFLQLQDYNDRVKTAEQRLQ 298
>gi|226494433|ref|NP_001148482.1| RNA-binding protein 25 [Zea mays]
gi|195619698|gb|ACG31679.1| RNA-binding protein 25 [Zea mays]
Length = 329
Score = 201 bits (511), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 132/335 (39%), Positives = 195/335 (58%), Gaps = 43/335 (12%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
M +D+ +SVYVGGLPY ANE+ +R F YG++V+VK++ND + +GKCYGFVTF +PR+
Sbjct: 1 MAVDEVNSVYVGGLPYEANEEMLRDAFGYYGTIVSVKVINDHAVKGKCYGFVTFTHPRAT 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRD-----RDNNRHRDR 148
AI M+G+ + R+VRV+EV TRG + + GRD FR R GRD RD R DR
Sbjct: 61 EQAIAGMDGKKLGNRIVRVNEVRTRGPR-DFGRDGFRRDPRRYGRDPYWDRRDRERSYDR 119
Query: 149 YQDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRI 208
+D Y+DR +R+ DR+ R+YEH G R
Sbjct: 120 ERDPYHDRDSDRSREHDRE----RDYEH--------------------------GGFNRE 149
Query: 209 HDPELANWERKSELDMTRDREIDGTDDYHTI---VDEGKDHLSRKRDGSTVDDHQLREFS 265
D + +R E D R RE D T + H + D+ K+H+SRKR S
Sbjct: 150 IDYPM---DRDREGDERRPREHDRTAEMHNVDSDNDKDKEHVSRKRFSRPKGRDSRDLSS 206
Query: 266 SNSSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325
S+ N D +LD++IQ RE+L+ EI+ ++++++ KEQ + DLQK+++KLE+ L+ A+
Sbjct: 207 SSDGLQN-DGKHQLDKTIQMREDLENEINQIKDKISGKEQHIADLQKKAQKLEDELVAAR 265
Query: 326 KLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360
K+SS RQ +T LYK F+Q+ +Y +R+K+ E+ Q
Sbjct: 266 KVSSERQLAVTDLYKHFLQLQDYNDRVKTAEQRLQ 300
>gi|125581246|gb|EAZ22177.1| hypothetical protein OsJ_05839 [Oryza sativa Japonica Group]
Length = 342
Score = 196 bits (499), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 139/338 (41%), Positives = 205/338 (60%), Gaps = 28/338 (8%)
Query: 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPR 91
+ +++E+SVYVGGLPY ANED +R F ++G++V+VK++ND+ RGKCYGFVTF +
Sbjct: 1 MSAAVNEETSVYVGGLPYEANEDMLRDAFGRFGTIVSVKVINDQRVRGKCYGFVTFTHAD 60
Query: 92 SAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQD 151
+A AI+ M+G+ I+ RVVRV+EV TRG + GR+ FR R+ RD Y D
Sbjct: 61 AAQHAISGMDGKRINRRVVRVNEVRTRGAR-EFGREGFR---------REPGSARDAYWD 110
Query: 152 RYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENN---DQGHTRI 208
R R RER+ +DRD Y E +G D E + DQ H
Sbjct: 111 R---RDRERSYDRDRDP-----YHDRDSDRSRDRDRDRFYEPRGFDQEIDYPMDQDHG-- 160
Query: 209 HDPELANWERKSEL---DMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFS 265
D +++R +E+ D DRE + + DY + ++ K+ SRKR S DH R+ S
Sbjct: 161 -DERRRDYDRAAEMHNVDSDNDREKENSKDYDSEREKEKEQRSRKR-FSRPKDHDSRDLS 218
Query: 266 SNSSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325
+S D +SD ++L+++IQ RE+L+ E+S ++++V KEQ + DLQKRS+KLE+ L A+
Sbjct: 219 VSSDDLHSDAKRQLNKAIQMREDLENEVSQIKDKVAAKEQHIADLQKRSQKLEDELSAAR 278
Query: 326 KLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363
K+SS RQ +TKLYKCF+Q+ +Y +R+K E+E Q I
Sbjct: 279 KVSSERQLVVTKLYKCFLQLQDYNDRVKMSEKELQSLI 316
>gi|125538561|gb|EAY84956.1| hypothetical protein OsI_06320 [Oryza sativa Indica Group]
Length = 342
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 139/338 (41%), Positives = 205/338 (60%), Gaps = 28/338 (8%)
Query: 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPR 91
+ +++E+SVYVGGLPY ANED +R F ++G++V+VK++ND+ RGKCYGFVTF +
Sbjct: 1 MSAAVNEETSVYVGGLPYEANEDMLRDAFGRFGTIVSVKVINDQRVRGKCYGFVTFTHAD 60
Query: 92 SAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQD 151
+A AI+ M+G+ I+ RVVRV+EV TRG + GR+ FR R+ RD Y D
Sbjct: 61 AAQHAISGMDGKRINRRVVRVNEVRTRGAR-EFGREGFR---------REPGSARDAYWD 110
Query: 152 RYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENN---DQGHTRI 208
R R RER+ +DRD Y E +G D E + DQ H
Sbjct: 111 R---RDRERSYDRDRDP-----YHDRDSDRSRDRDRDRFYEPRGFDQEIDYPMDQDHG-- 160
Query: 209 HDPELANWERKSEL---DMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFS 265
D +++R +E+ D DRE + + DY + ++ K+ SRKR S DH R+ S
Sbjct: 161 -DERRRDYDRVAEMHNVDSDNDREKENSKDYDSEREKEKEQRSRKR-FSRPKDHDSRDLS 218
Query: 266 SNSSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325
+S D +SD ++L+++IQ RE+L+ E+S ++++V KEQ + DLQKRS+KLE+ L A+
Sbjct: 219 VSSDDLHSDAKRQLNKAIQMREDLESEVSQIKDKVAAKEQHIADLQKRSQKLEDELSAAR 278
Query: 326 KLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363
K+SS RQ +TKLYKCF+Q+ +Y +R+K E+E Q I
Sbjct: 279 KVSSERQLVVTKLYKCFLQLQDYNDRVKMSEKELQSLI 316
>gi|326495184|dbj|BAJ85688.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 351
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 23/344 (6%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
M +++E+SVYVGGLPY A+ED +R F G++V+VK++ND+ RGKCYGFVT+ R+A
Sbjct: 1 MAVNEETSVYVGGLPYEADEDMLRNYFGPCGTIVSVKVINDQRVRGKCYGFVTYTQHRAA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRD-----RDNNRHRDR 148
AI +M+G+ I R VRV+EV TRG + GRD FR GRD RD R DR
Sbjct: 61 QRAILEMDGKQIGNRAVRVNEVRTRGNTRDFGRDGFRRDPVRDGRDVYWDRRDRERSYDR 120
Query: 149 YQDR---YNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGH 205
++DR ++ S ++H D+ D RD DE + RDL D
Sbjct: 121 HRDRDPYHDRDSDRPRDHDRDRYDERGGFDHEMDYSMD--RDHEGDERRARDLYRGD--- 175
Query: 206 TRIHDPELANWERKSELDMTRDREIDGTDDYHTIVD-EGKDHLSRKRDGSTVDDHQLREF 264
HD + ++ +D DRE + + Y + D E K+ RKR S + RE
Sbjct: 176 ---HDRPM-----ETRMDSDNDREKENSKGYDSERDKEDKEQPPRKR-FSRPKGRESREI 226
Query: 265 SSNSSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324
SS+S + ++D +LD++IQ E+L+ E+S ++++V K+ + DLQK+ +KLE+ L A
Sbjct: 227 SSSSDELHNDAKHQLDKAIQMHEDLENEVSQIKDKVTSKDHHIADLQKKFQKLEDELAAA 286
Query: 325 KKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368
+K+SS RQ +TKLYK F+Q+ +Y +R K+ E + + + + ++
Sbjct: 287 RKVSSERQLTVTKLYKSFLQLQDYNDRAKTAEEDLKALVDSAMA 330
>gi|326502478|dbj|BAJ95302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 351
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 129/344 (37%), Positives = 198/344 (57%), Gaps = 23/344 (6%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
M +++E+SVYVGGLPY A+ED +R F G++V+VK++ND+ RGKCYGFVT+ R+A
Sbjct: 1 MAVNEETSVYVGGLPYEADEDMLRNYFGPCGTIVSVKVINDQRVRGKCYGFVTYTQHRAA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRD-----RDNNRHRDR 148
AI +M+G+ I R VRV+EV TRG + GRD FR GRD RD R DR
Sbjct: 61 QRAILEMDGKQIGNRAVRVNEVRTRGNTRDFGRDGFRRDPVRDGRDVYWDRRDRERSYDR 120
Query: 149 YQDR---YNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGH 205
++DR ++ S ++H D+ D RD DE + RDL D
Sbjct: 121 HRDRDPYHDRDSDRPRDHDRDRYDERGGFDHEMDYSMD--RDHEGDERRARDLYRGD--- 175
Query: 206 TRIHDPELANWERKSELDMTRDREIDGTDDYHTIVD-EGKDHLSRKRDGSTVDDHQLREF 264
HD + ++ +D DRE + + Y + D E K+ RKR S + RE
Sbjct: 176 ---HDRPM-----ETRMDSDNDREKENSKGYDSERDKEDKEQPPRKR-FSRPKGRESREI 226
Query: 265 SSNSSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324
SS+S + ++D +LD++IQ E+L+ E+S ++++V K+ + DLQK+ +KLE+ L A
Sbjct: 227 SSSSDELHNDAKHQLDKTIQMHEDLENEVSQIKDKVTSKDHHIADLQKKFQKLEDELAAA 286
Query: 325 KKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368
+K+SS RQ +TKLYK F+Q+ +Y +R K+ E + + + + ++
Sbjct: 287 RKVSSERQLTVTKLYKSFLQLQDYNDRAKTAEEDHKALVDSAMA 330
>gi|255576924|ref|XP_002529347.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223531167|gb|EEF33014.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 218
Score = 161 bits (408), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/222 (48%), Positives = 145/222 (65%), Gaps = 12/222 (5%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
M +DD++S+YVG LPYSA ED++R+VF YGS+V+VKI+ND TRGKCY FVTF NPRS
Sbjct: 1 MRVDDDNSIYVGSLPYSATEDTIRRVFGPYGSIVSVKIINDHGTRGKCYCFVTFRNPRSV 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHG-----HRHKGRDRDNNRHRDR 148
DAINDMNG+TIDGRVVRV+ V TRG +++ R++ R R + R+RD +R RD
Sbjct: 61 SDAINDMNGKTIDGRVVRVNGVTTRGGRTDFSRERLRCNTERSLDRGRDRERDYDRDRDW 120
Query: 149 YQDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRI 208
++++Y+DRSRE S DR + R +E DHDR +RD + +D R + +N+ R
Sbjct: 121 FREQYSDRSREHGRSLDRGEDGDRRHELAHDHDR--ARDVYQSQD--RVMVDNEPVEGRN 176
Query: 209 HDPELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRK 250
D +WER L M ++RE DGT+ VD D SRK
Sbjct: 177 GD---RSWERGHNLHMDQEREHDGTNGDRVFVDMETDQHSRK 215
>gi|449509482|ref|XP_004163601.1| PREDICTED: uncharacterized LOC101205569 [Cucumis sativus]
Length = 195
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 99/208 (47%), Positives = 131/208 (62%), Gaps = 41/208 (19%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
MT+DD+SS+YVGGLPY A EDS+R++FD YG+VVAVKI+NDRSTRGKCYGFVTF NPRSA
Sbjct: 1 MTVDDDSSIYVGGLPYDATEDSLRRIFDLYGAVVAVKIINDRSTRGKCYGFVTFTNPRSA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATR--------GRKSNSGRD------------QFRHGH 133
+DAI DM+GRTI+GRVVRV+ V +R G + ++ RD +
Sbjct: 61 IDAIKDMDGRTIEGRVVRVNGVKSRLGGRFGKEGNRFDAERDVSWERDRDRGRDYDHDRY 120
Query: 134 RHKGRDRDNNRHRDRYQDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDED 193
RH+GR+ D +R +DRSRE D DK G Y+H DRD RD+F D +
Sbjct: 121 RHRGRNNDWSRD--------HDRSRE----HDLDKERG--YKH--SQDRDLPRDQFLDRE 164
Query: 194 QGRDLENNDQGHTRIHDPEL---ANWER 218
+LE + + ++HD +L +WE+
Sbjct: 165 P--ELEKTSKDNEKVHDLKLNHDQDWEK 190
>gi|255636731|gb|ACU18701.1| unknown [Glycine max]
Length = 195
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 84/98 (85%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
MT+DD+SS+YVGGLPY A E+++R VF+ YG+++ VKI+ND TRGKCY FVTF NPRSA
Sbjct: 1 MTMDDDSSIYVGGLPYDATEETIRTVFNLYGAILDVKIINDPRTRGKCYCFVTFTNPRSA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRH 131
+DAINDMNGRTIDGRVV+V+ V TRG +SN GR+++ +
Sbjct: 61 IDAINDMNGRTIDGRVVKVNGVRTRGGRSNFGRERYYY 98
>gi|357477847|ref|XP_003609209.1| Glycine-rich RNA-binding protein-like protein [Medicago truncatula]
gi|355510264|gb|AES91406.1| Glycine-rich RNA-binding protein-like protein [Medicago truncatula]
Length = 555
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 86/170 (50%), Positives = 123/170 (72%), Gaps = 14/170 (8%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
MT+DD+SS+YVGGLPY A ++++R VF+ YG+++ VKI+ND+ T GKCY FVTF NPRSA
Sbjct: 1 MTLDDDSSIYVGGLPYGATDETIRTVFNLYGAILDVKIINDQRTIGKCYCFVTFTNPRSA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRG---RKSNSGRDQFRHGHRHKGRDRDNNR-HRDR- 148
+DAINDMNGRTI+GRVV+V+ V +RG +SN GR++ R+ H + R+ D +R RDR
Sbjct: 61 IDAINDMNGRTINGRVVKVNGVKSRGGGSGRSNFGRERERYYHHNDERNGDWDRGGRDRE 120
Query: 149 YQDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDL 198
+D+ DR R+R + RD+ +Y+HV +++D R+R SD +G D
Sbjct: 121 IRDQDYDRVRDR---EIRDQ----DYDHV--NEKDGYRNRGSDWSRGGDW 161
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 81/219 (36%), Positives = 132/219 (60%), Gaps = 16/219 (7%)
Query: 153 YNDRSRE----RTSSQDRDKGM-GREYEHVRDHDRDPSRDRFSDEDQGRDLE--NNDQGH 205
Y+D++RE R S+DRD + R EH++D+D R+ D+D RD + N+ +
Sbjct: 321 YDDQARESMLDRDGSRDRDIMVRDRRVEHLQDYD--DHRESMLDDDWNRDGDRAENELEN 378
Query: 206 TRIHDPELANWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFS 265
+R+ ++ ++ LD+ D++ D D DE K R+ V +
Sbjct: 379 SRVQGGDV---DKDRTLDVDPDKKNDRISDPDKSFDEHKKEQPRRNIDLNVTNQN---SP 432
Query: 266 SNSSDDNSDQVK-ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324
S+S+ D++D+V+ EL+RSIQ ++LKKE+S +EE + + V++LQK SKK+E+A+I A
Sbjct: 433 SDSNGDHNDEVEDELERSIQLLDQLKKEVSKLEEGLEERRLNVMELQKHSKKMEDAVITA 492
Query: 325 KKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363
KK S +RQ QLTKL++CF+QV++ ERLK+ E+E Q +
Sbjct: 493 KKKSLYRQMQLTKLHECFLQVHDSTERLKTSEKELQALV 531
>gi|357140041|ref|XP_003571581.1| PREDICTED: uncharacterized protein LOC100826556 [Brachypodium
distachyon]
Length = 350
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 71/99 (71%), Gaps = 2/99 (2%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
M +++++SVYVGGLPY A E+ +R+ F G ++AVK++ND+ RGKCYGFVT+ +P++A
Sbjct: 1 MAVNEDTSVYVGGLPYDATEEKLRRYFGSCGEIIAVKVINDQRVRGKCYGFVTYSHPKAA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEV--ATRGRKSNSGRDQFR 130
AIN+M+G+ I R V+V++V A G + G D FR
Sbjct: 61 QRAINEMDGQQIGNRAVKVNQVRSARSGGRDFGGHDGFR 99
>gi|413926160|gb|AFW66092.1| hypothetical protein ZEAMMB73_635407 [Zea mays]
Length = 262
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 148/269 (55%), Gaps = 38/269 (14%)
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRD-----RDNNRHRDRYQDRYN 154
M+G+ + R++RV+EV TRG + + GRD FR R GRD RD + DR +D Y+
Sbjct: 1 MDGKKLGNRIIRVNEVRTRGPR-DFGRDGFRRDPRRYGRDPYWDRRDREQSYDRERDPYH 59
Query: 155 DRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELA 214
DR +R+ DR+ R+YEH +R D RD E +D H R HD
Sbjct: 60 DRDSDRSREHDRE----RDYEH-------GGFNREVDYPMDRDHEVDDI-HPREHD---- 103
Query: 215 NWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFSSNSSDDNSD 274
R +E T + + D+ K+H SRKR + + S+SSD +D
Sbjct: 104 ---RAAE-----------THNMDSDNDKYKEHGSRKRFSHPKG--RDSKDLSSSSDLQND 147
Query: 275 QVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQ 334
+LD++IQ RE+L+ E+S ++++++ K Q + DLQK+++KLE+ L A+K+SS RQ
Sbjct: 148 GKHQLDKTIQMREDLENEVSQIKDKISAKGQHIADLQKKAQKLEDELAAARKVSSERQLA 207
Query: 335 LTKLYKCFIQVNEYAERLKSCEREFQVSI 363
+T LYK F+Q+ +Y +R+K+ E Q +
Sbjct: 208 VTDLYKHFLQLQDYNDRVKTAEHRLQSLV 236
>gi|413926161|gb|AFW66093.1| hypothetical protein ZEAMMB73_635407 [Zea mays]
Length = 260
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 147/269 (54%), Gaps = 40/269 (14%)
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRD-----RDNNRHRDRYQDRYN 154
M+G+ + R++RV+EV TRG + + GRD FR R GRD RD + DR +D Y+
Sbjct: 1 MDGKKLGNRIIRVNEVRTRGPR-DFGRDGFRRDPRRYGRDPYWDRRDREQSYDRERDPYH 59
Query: 155 DRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPELA 214
DR +R+ DR+ R+YEH +R D RD E +D H R HD
Sbjct: 60 DRDSDRSREHDRE----RDYEH-------GGFNREVDYPMDRDHEVDDI-HPREHD---- 103
Query: 215 NWERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREFSSNSSDDNSD 274
R +E T + + D+ K+H SRK + + S+SSD +D
Sbjct: 104 ---RAAE-----------THNMDSDNDKYKEHGSRKSHPKG----RDSKDLSSSSDLQND 145
Query: 275 QVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQ 334
+LD++IQ RE+L+ E+S ++++++ K Q + DLQK+++KLE+ L A+K+SS RQ
Sbjct: 146 GKHQLDKTIQMREDLENEVSQIKDKISAKGQHIADLQKKAQKLEDELAAARKVSSERQLA 205
Query: 335 LTKLYKCFIQVNEYAERLKSCEREFQVSI 363
+T LYK F+Q+ +Y +R+K+ E Q +
Sbjct: 206 VTDLYKHFLQLQDYNDRVKTAEHRLQSLV 234
>gi|168061382|ref|XP_001782668.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665828|gb|EDQ52499.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 82
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 63/81 (77%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAV 94
+DD +SVYVGGL Y + E+++++ F ++G VV+VKIV+DR S + +GFVTF NPR+A
Sbjct: 1 MDDTNSVYVGGLSYGSTEETLKRSFMQFGEVVSVKIVHDRDSGESRGFGFVTFSNPRAAT 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
AI DM+GR I+GR +RV+EV
Sbjct: 61 VAIQDMDGRQIEGRTIRVNEV 81
>gi|168033388|ref|XP_001769197.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679462|gb|EDQ65909.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 83
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAV 94
++D +SVYVGGL Y ++ED+V+K F ++G VV+VKIV DR S + +GFV+F NPRSA
Sbjct: 1 MNDANSVYVGGLSYESSEDTVKKAFMEFGEVVSVKIVYDRESGESRGFGFVSFTNPRSAT 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
AI DM+G I+GR +RV+EV
Sbjct: 61 MAIRDMDGGQIEGRTIRVNEV 81
>gi|449509470|ref|XP_004163598.1| PREDICTED: uncharacterized LOC101205569 [Cucumis sativus]
Length = 131
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 68/86 (79%)
Query: 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTK 337
+L+ S +R EEL+KE+S +EER KE+LV++LQK++KKLE+ALI+AKK SS RQ QL K
Sbjct: 36 QLEISTERLEELRKEVSQIEERSGEKEKLVVELQKKAKKLEDALISAKKRSSFRQTQLIK 95
Query: 338 LYKCFIQVNEYAERLKSCEREFQVSI 363
L+K F+ V +Y++RLK+ E+E Q +
Sbjct: 96 LHKSFLLVKDYSKRLKTSEQELQALV 121
>gi|302765773|ref|XP_002966307.1| hypothetical protein SELMODRAFT_439636 [Selaginella moellendorffii]
gi|300165727|gb|EFJ32334.1| hypothetical protein SELMODRAFT_439636 [Selaginella moellendorffii]
Length = 289
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/86 (45%), Positives = 56/86 (65%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
MT+ D++SVYVGGL Y ED +R F+++G + VKI+ D + + YGF+TF +A
Sbjct: 1 MTVSDQTSVYVGGLAYDVTEDLIRSTFEEFGEIDKVKIIQDHDGQSRGYGFITFATSEAA 60
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRG 119
AI MNG+ + GR +RV+EV RG
Sbjct: 61 NGAIYGMNGKVVAGRSIRVNEVKNRG 86
>gi|168044555|ref|XP_001774746.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673901|gb|EDQ60417.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 83
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAV 94
+DD +SV+VGGL Y ++ED+V+K F ++G VV+VKIV DR S + +GFV+F NPRSA
Sbjct: 1 MDDANSVHVGGLSYESSEDAVKKAFIEFGEVVSVKIVYDRESGESRGFGFVSFTNPRSAT 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
AI DM+G I+GR +RV+EV
Sbjct: 61 MAIRDMDGGQIEGRTIRVNEV 81
>gi|45544646|ref|NP_956311.1| cold inducible RNA binding protein isoform 2 [Danio rerio]
gi|28856196|gb|AAH48027.1| Cold inducible RNA binding protein [Danio rerio]
gi|182891172|gb|AAI64022.1| Cirbp protein [Danio rerio]
Length = 184
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL Y E S+ + F KYG++ V ++ DR T R + +GFVTF NP A
Sbjct: 1 MSDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+ +DGR++RV E
Sbjct: 61 DAMAAMNGKQVDGRMIRVDEAG 82
>gi|197632397|gb|ACH70922.1| elongation factor-1 delta-1 [Salmo salar]
Length = 203
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + +E S+ + F KYG++ V +V DR T R + +GFVTF NP A
Sbjct: 1 MSDEGKLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+++DGR++RV E
Sbjct: 61 DAMAAMNGKSVDGRMIRVDEAG 82
>gi|20975276|dbj|BAB92955.1| cold inducible RNA-binding protein alpha [Hyla japonica]
Length = 162
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M+ DE ++VGGL + E S+ +VF KYG + V +V DR T R + +GFVTF NP
Sbjct: 1 MSSSDEGKLFVGGLSFDTEEQSLEQVFGKYGQISEVVVVKDRETKRSRGFGFVTFENPED 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVA 116
A DA+ MNG+++DGR +RV +
Sbjct: 61 AKDAMEAMNGKSVDGRQIRVDQAG 84
>gi|259089109|ref|NP_001158591.1| cold inducible RNA binding protein [Oncorhynchus mykiss]
gi|225705082|gb|ACO08387.1| Cold-inducible RNA-binding protein [Oncorhynchus mykiss]
Length = 209
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
+ DE ++VGGL + +E S+ + F KYG++ V +V DR TR + +GFVTF NP A
Sbjct: 1 MSDEGKLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETRRSRGFGFVTFENPEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+++DGR++RV E
Sbjct: 61 DAMAAMNGKSVDGRMIRVDEAG 82
>gi|209737234|gb|ACI69486.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 146
Score = 80.9 bits (198), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + +E S+ + F KYG++ V +V DR T R + +GFVTF NP A
Sbjct: 1 MSDEGKLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+++DGR++RV E
Sbjct: 61 DAMAAMNGKSVDGRMIRVDEAG 82
>gi|20975278|dbj|BAB92956.1| cold inducible RNA-binding protein beta [Hyla japonica]
Length = 166
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M+ DE ++VGGL + E ++ +VF KYG + V +V DR T R + +GFVTF NP
Sbjct: 1 MSSSDEGKLFVGGLSFDTEEQNLEQVFGKYGQISEVVVVKDRETQRSRGFGFVTFENPED 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVA 116
A DA+ MNG+++DGR +RV +
Sbjct: 61 AKDAMEAMNGKSVDGRQIRVDQAG 84
>gi|209154454|gb|ACI33459.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 206
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + +E S+ + F KYG++ V +V DR T R + +GFVTF NP A
Sbjct: 1 MSDEGKLFVGGLCFDTDETSLEEAFSKYGNIAKVDVVRDRETQRSRGFGFVTFENPEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+++DGR++RV E
Sbjct: 61 DAMAAMNGKSVDGRMIRVDEAG 82
>gi|168067714|ref|XP_001785753.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662601|gb|EDQ49434.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 79
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/78 (53%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAV 94
+DD +SVYVGGL Y + ED+VRK F +G V++VKIV+D+ S + +GFVTF N RSA
Sbjct: 1 MDDANSVYVGGLSYESTEDTVRKHFMTFGEVLSVKIVHDKMSGESRGFGFVTFANQRSAS 60
Query: 95 DAINDMNGRTIDGRVVRV 112
AI+D +G I+GR +RV
Sbjct: 61 MAISDGDGVQIEGRCIRV 78
>gi|148235865|ref|NP_001079794.1| cold-inducible RNA-binding protein B [Xenopus laevis]
gi|82247034|sp|Q9DED4.1|CIRBB_XENLA RecName: Full=Cold-inducible RNA-binding protein B; AltName:
Full=Cold-inducible RNA-binding protein 2; Short=xCIRP2;
AltName: Full=Glycine-rich RNA-binding protein CIRP-B
gi|11761319|dbj|BAB19129.1| cold-inducible RNA binding protein 2 [Xenopus laevis]
gi|32450232|gb|AAH54250.1| Xcirp2 protein [Xenopus laevis]
Length = 166
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NE+S+ +VF KYG + V +V DR T R + +GFVTF NP A
Sbjct: 1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+ +DGR +RV +
Sbjct: 61 DAMMAMNGKAVDGRQIRVDQAG 82
>gi|115444957|ref|NP_001046258.1| Os02g0208200 [Oryza sativa Japonica Group]
gi|113535789|dbj|BAF08172.1| Os02g0208200 [Oryza sativa Japonica Group]
Length = 105
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 59/78 (75%)
Query: 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345
RE+L+ E+S ++++V KEQ + DLQKRS+KLE+ L A+K+SS RQ +TKLYKCF+Q+
Sbjct: 2 REDLENEVSQIKDKVAAKEQHIADLQKRSQKLEDELSAARKVSSERQLVVTKLYKCFLQL 61
Query: 346 NEYAERLKSCEREFQVSI 363
+Y +R+K E+E Q I
Sbjct: 62 QDYNDRVKMSEKELQSLI 79
>gi|62857699|ref|NP_001017228.1| cold-inducible RNA-binding protein [Xenopus (Silurana) tropicalis]
gi|123910273|sp|Q28IQ9.1|CIRBP_XENTR RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|89268649|emb|CAJ83306.1| cold inducible RNA binding protein [Xenopus (Silurana) tropicalis]
Length = 166
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + E+S+ +VF KYG V V +V DR S R + +GFVTF NP A DA
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSN 123
+ MNG+++DGR +RV + G+ SN
Sbjct: 64 MMAMNGKSVDGRQIRVDQA---GKSSN 87
>gi|209155104|gb|ACI33784.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|223648252|gb|ACN10884.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 167
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + NE S+ VF KYG + V ++ DR T R + +GFVTF NP A
Sbjct: 1 MSDEGKLFVGGLSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFENPDEAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+++DGR +RV +
Sbjct: 61 DAMLAMNGKSLDGRQIRVDQAG 82
>gi|387914322|gb|AFK10770.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
gi|392876160|gb|AFM86912.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
Length = 133
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
+ DE ++VGGL +S +E S+ +VF +YG + V+++ DR T+ + +GF+TF NP A
Sbjct: 1 MSDEGKLFVGGLSFSTDEQSLEEVFSEYGQISEVRVIKDRDTQLSRGFGFITFENPGDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
DA+ MNG++IDGR +RV +
Sbjct: 61 DALLAMNGKSIDGRQIRVDQA 81
>gi|229367642|gb|ACQ58801.1| Cold-inducible RNA-binding protein [Anoplopoma fimbria]
Length = 179
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NE+S+ F KYG++ V ++ DR T + + +GFV + N A
Sbjct: 1 MSDEGKLFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDRETEKSRGFGFVKYDNAEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGR 120
DA++ MNG+T+DGR +RV E GR
Sbjct: 61 DAMDGMNGQTLDGRTIRVDEAGKGGR 86
>gi|225706362|gb|ACO09027.1| Cold-inducible RNA-binding protein [Osmerus mordax]
Length = 172
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + NE S+ VF KYG + V ++ DR T R + +GFVTF NP A
Sbjct: 1 MSDEGKLFVGGLSFDTNEQSLEDVFSKYGQISEVVVIKDRETQRSRGFGFVTFDNPDEAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
DA+ MNG+++DGR +RV +
Sbjct: 61 DAMLAMNGKSLDGRQIRVDQA 81
>gi|119589927|gb|EAW69521.1| cold inducible RNA binding protein, isoform CRA_b [Homo sapiens]
Length = 184
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 23 VIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKC 81
+ + EE DE ++VGGL + NE S+ +VF KYG + V +V DR T R +
Sbjct: 1 MTWGTREEEQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRG 60
Query: 82 YGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+GFVTF N A DA+ MNG+++DGR +RV +
Sbjct: 61 FGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 95
>gi|6911142|gb|AAF31402.1| putative glycine-rich RNA binding protein 1 [Catharanthus roseus]
Length = 137
Score = 77.8 bits (190), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL ++ + S+ + F +YG V+ KI+NDR T R + +GFVTFG+ +S
Sbjct: 3 SADVEFRCFVGGLAWATTDQSLSEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEKSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+T+DGR V V+E
Sbjct: 63 KDAIEGMNGQTLDGRNVTVNEA 84
>gi|343459003|gb|AEM37660.1| cold inducible RNA binding protein [Epinephelus bruneus]
Length = 176
Score = 77.8 bits (190), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NE+S+ F KYG++ V ++ D+ T R + +GFV + N A
Sbjct: 1 MSDEGKLFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNSDDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
DA+ MNG+T+DGR +RV E A +G +SN G
Sbjct: 61 DALEGMNGKTLDGRAIRVDE-AGKGGRSNRG 90
>gi|392882418|gb|AFM90041.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
gi|392884370|gb|AFM91017.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
Length = 178
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 65/117 (55%), Gaps = 9/117 (7%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGG+ + +E ++ +VF KYG V V ++ +R T R K +GFVTF NP A
Sbjct: 1 MSDEGKLFVGGINFETDEQTLEEVFAKYGDVSEVIVIRERDTQRSKGFGFVTFENPDDAR 60
Query: 95 DAINDMNGRTIDGRVVRVSEV----ATRGRKSNSGRD----QFRHGHRHKGRDRDNN 143
DA+ MNG+T+DGR +RV R R SG+ FR G +G RD
Sbjct: 61 DALAGMNGKTVDGRQIRVDHAGKSSGNRSRSYQSGQSYGNYSFRGGRSSRGFSRDGG 117
>gi|349804063|gb|AEQ17504.1| putative cold-inducible rna-binding protein b [Hymenochirus
curtipes]
Length = 123
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D+ +++GGL + NED + +VF KYG + V +V DR T R + +GFVTF NP A DA
Sbjct: 2 DDGKLFIGGLNFDTNEDGLEQVFGKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDA 61
Query: 97 INDMNGRTIDGRVVRVSEV 115
+ MNG+ +DGR +RV +
Sbjct: 62 MMAMNGKAVDGRQIRVDQA 80
>gi|194385818|dbj|BAG65284.1| unnamed protein product [Homo sapiens]
Length = 263
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDR 156
+ MNG+++DGR +RV + R R + R G RD ++R + Y+DR
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGGGDRGYGGNRFESRSGGYGGSRDYYSSRSQS---GGYSDR 120
Query: 157 S 157
S
Sbjct: 121 S 121
>gi|348501352|ref|XP_003438234.1| PREDICTED: cold-inducible RNA-binding protein A-like [Oreochromis
niloticus]
Length = 183
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NEDS+ F KYG++ V ++ D+ T R + +GFV + N A
Sbjct: 1 MSDEGKLFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNAEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
DA++ MNG+T+DGR +RV E
Sbjct: 61 DALDAMNGKTLDGRAIRVDEA 81
>gi|449273022|gb|EMC82651.1| Cold-inducible RNA-binding protein [Columba livia]
Length = 153
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDR---- 152
+ MNG+++DGR +RV + G+ S + G R R N RD Y R
Sbjct: 64 MMAMNGKSVDGRQIRVDQA---GKSSENRSRGGYGGGRFDSRSGGYNGSRDYYNSRSQGG 120
Query: 153 YNDRS 157
Y DRS
Sbjct: 121 YGDRS 125
>gi|119589931|gb|EAW69525.1| cold inducible RNA binding protein, isoform CRA_d [Homo sapiens]
Length = 311
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 56/95 (58%), Gaps = 1/95 (1%)
Query: 23 VIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKC 81
+ + EE DE ++VGGL + NE S+ +VF KYG + V +V DR T R +
Sbjct: 1 MTWGTREEEQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRG 60
Query: 82 YGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+GFVTF N A DA+ MNG+++DGR +RV +
Sbjct: 61 FGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 95
>gi|30692256|ref|NP_849524.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|332661646|gb|AEE87046.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 92
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ N++ +++ F ++G V+ KI+NDR S R + +GFVTF + ++ DAI +MN
Sbjct: 9 FVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMN 68
Query: 102 GRTIDGRVVRVSEVATRG 119
G+ +DGRV+ V+E +RG
Sbjct: 69 GKELDGRVITVNEAQSRG 86
>gi|334326698|ref|XP_001365067.2| PREDICTED: cold-inducible RNA-binding protein-like [Monodelphis
domestica]
Length = 172
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|221048043|gb|ACL98129.1| hyperosmotic glycine rich protein [Epinephelus coioides]
Length = 175
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NE+S+ F KYG++ V ++ D+ T R + +GFV + N A
Sbjct: 1 MSDEGKLFIGGLSFETNEESLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNCDDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
DA+ MNG+T+DGR +RV E A +G +SN G
Sbjct: 61 DALEGMNGKTLDGRAIRVDE-AGKGGRSNRG 90
>gi|395513325|ref|XP_003760877.1| PREDICTED: cold-inducible RNA-binding protein [Sarcophilus
harrisii]
Length = 172
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|348550387|ref|XP_003461013.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Cavia porcellus]
Length = 173
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE +++GGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFIGGLSFDTNEQSLEEVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|159163576|pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 70
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 71 MMAMNGKSVDGRQIRVDQAG 90
>gi|417397313|gb|JAA45690.1| Putative rasgap sh3 binding protein rasputin [Desmodus rotundus]
Length = 218
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|90077754|dbj|BAE88557.1| unnamed protein product [Macaca fascicularis]
Length = 172
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|410949903|ref|XP_003981656.1| PREDICTED: cold-inducible RNA-binding protein [Felis catus]
Length = 172
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQIAEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|387913868|gb|AFK10543.1| cold-inducible RNA-binding protein-like protein [Callorhinchus
milii]
Length = 178
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 9/117 (7%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGG+ + +E ++ +VF KYG V V ++ +R T R K GFVTF NP A
Sbjct: 1 MSDEGKLFVGGINFETDEQTLEEVFAKYGDVSEVIVIRERDTQRSKGLGFVTFENPDDAR 60
Query: 95 DAINDMNGRTIDGRVVRVSEV----ATRGRKSNSGRD----QFRHGHRHKGRDRDNN 143
DA+ MNG+T+DGR +RV R R SG+ FR G +G RD
Sbjct: 61 DALAGMNGKTVDGRQIRVDHAGKSSGNRSRSYQSGQSYGNYSFRGGRSSRGFSRDGG 117
>gi|3342756|gb|AAC41383.1| RNA-binding protein AxRNBP [Ambystoma mexicanum]
Length = 144
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M+ DE ++VGGL + +NE S+ F KYG V +V DR T R + +GFVTF NP
Sbjct: 1 MSSSDEGKLFVGGLSFDSNEHSLESAFSKYGDVCDAVVVKDRETGRSRGFGFVTFRNPSD 60
Query: 93 AVDAINDMNGRTIDGRVVRV 112
A +A++ MNG ++DGR +RV
Sbjct: 61 AKEALHAMNGESLDGRQIRV 80
>gi|432101154|gb|ELK29438.1| Cold-inducible RNA-binding protein [Myotis davidii]
Length = 204
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|327290660|ref|XP_003230040.1| PREDICTED: cold-inducible RNA-binding protein-like [Anolis
carolinensis]
Length = 176
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|402903547|ref|XP_003914625.1| PREDICTED: cold-inducible RNA-binding protein [Papio anubis]
Length = 199
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 27 LIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFV 85
+ E DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFV
Sbjct: 20 VTPEAQAAMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFV 79
Query: 86 TFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
TF N A DA+ MNG+++DGR +RV +
Sbjct: 80 TFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 110
>gi|441656594|ref|XP_003277032.2| PREDICTED: cold-inducible RNA-binding protein [Nomascus leucogenys]
Length = 144
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|30585341|gb|AAP36943.1| Homo sapiens cold inducible RNA binding protein [synthetic
construct]
gi|61371531|gb|AAX43684.1| cold inducible RNA binding protein [synthetic construct]
gi|61371536|gb|AAX43685.1| cold inducible RNA binding protein [synthetic construct]
Length = 173
Score = 75.5 bits (184), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|350535477|ref|NP_001233126.1| cold-inducible RNA-binding protein [Sus scrofa]
gi|330847371|gb|AEC46651.1| cold inducible RNA binding protein transcript variant 3 [Sus
scrofa]
Length = 144
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRDFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|71668509|gb|AAZ38826.1| aggrecan promoter binding protein [Gallus gallus]
Length = 172
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|161408091|dbj|BAF94149.1| cold-inducible RNA binding protein [Alligator mississippiensis]
Length = 165
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|432915990|ref|XP_004079241.1| PREDICTED: cold-inducible RNA-binding protein-like [Oryzias
latipes]
Length = 174
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NEDS+ F KYG++ V ++ D+ T R + +GFV + N A
Sbjct: 1 MSDEGKLFIGGLSFETNEDSLAAAFGKYGTIEKVDVIRDKETGRSRGFGFVKYDNVEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSE 114
DA++ MNG+T+DGR +RV E
Sbjct: 61 DALDAMNGKTLDGRAIRVDE 80
>gi|4502847|ref|NP_001271.1| cold-inducible RNA-binding protein [Homo sapiens]
gi|197102572|ref|NP_001124692.1| cold-inducible RNA-binding protein [Pongo abelii]
gi|386782231|ref|NP_001248245.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|397465267|ref|XP_003804430.1| PREDICTED: cold-inducible RNA-binding protein [Pan paniscus]
gi|426386441|ref|XP_004059693.1| PREDICTED: cold-inducible RNA-binding protein isoform 1 [Gorilla
gorilla gorilla]
gi|5921786|sp|Q14011.1|CIRBP_HUMAN RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|75070980|sp|Q5RF83.1|CIRBP_PONAB RecName: Full=Cold-inducible RNA-binding protein; AltName:
Full=Glycine-rich RNA-binding protein CIRP
gi|1060893|dbj|BAA11212.1| CIRP [Homo sapiens]
gi|2541973|gb|AAC51787.1| DNA damage-inducible RNA binding protein [Homo sapiens]
gi|2924760|gb|AAC04895.1| CIRP [Homo sapiens]
gi|12653269|gb|AAH00403.1| Cold inducible RNA binding protein [Homo sapiens]
gi|12654167|gb|AAH00901.1| Cold inducible RNA binding protein [Homo sapiens]
gi|30583259|gb|AAP35874.1| cold inducible RNA binding protein [Homo sapiens]
gi|55725420|emb|CAH89574.1| hypothetical protein [Pongo abelii]
gi|60654971|gb|AAX32049.1| cold inducible RNA binding protein [synthetic construct]
gi|67970531|dbj|BAE01608.1| unnamed protein product [Macaca fascicularis]
gi|119589926|gb|EAW69520.1| cold inducible RNA binding protein, isoform CRA_a [Homo sapiens]
gi|119589929|gb|EAW69523.1| cold inducible RNA binding protein, isoform CRA_a [Homo sapiens]
gi|157928054|gb|ABW03323.1| cold inducible RNA binding protein [synthetic construct]
gi|157928769|gb|ABW03670.1| cold inducible RNA binding protein [synthetic construct]
gi|197692151|dbj|BAG70039.1| cold inducible RNA binding protein [Homo sapiens]
gi|197692397|dbj|BAG70162.1| cold inducible RNA binding protein [Homo sapiens]
gi|261860266|dbj|BAI46655.1| cold inducible RNA binding protein [synthetic construct]
gi|343958578|dbj|BAK63144.1| cold-inducible RNA-binding protein [Pan troglodytes]
gi|383415637|gb|AFH31032.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|384940732|gb|AFI33971.1| cold-inducible RNA-binding protein [Macaca mulatta]
gi|410224774|gb|JAA09606.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410260066|gb|JAA17999.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410289136|gb|JAA23168.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343217|gb|JAA40555.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343219|gb|JAA40556.1| cold inducible RNA binding protein [Pan troglodytes]
gi|410343223|gb|JAA40558.1| cold inducible RNA binding protein [Pan troglodytes]
Length = 172
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|62955567|ref|NP_001017797.1| cold inducible RNA binding protein [Danio rerio]
gi|62202782|gb|AAH93299.1| Zgc:112425 [Danio rerio]
gi|63100518|gb|AAH95030.1| Zgc:112425 [Danio rerio]
gi|182889498|gb|AAI65256.1| Zgc:112425 protein [Danio rerio]
Length = 185
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + E S+ F KYG + V + +R T R + +GFVTF NP A
Sbjct: 1 MSDEGKLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+++DGR +RV E
Sbjct: 61 DALEGMNGKSVDGRTIRVDEAG 82
>gi|417408518|gb|JAA50808.1| Putative rna-binding protein seb4 rrm superfamily, partial
[Desmodus rotundus]
Length = 193
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 57/93 (61%), Gaps = 3/93 (3%)
Query: 25 FNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYG 83
FN + + + DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +G
Sbjct: 14 FNGLPQATMAS--DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFG 71
Query: 84 FVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
FVTF N A DA+ MNG+++DGR +RV +
Sbjct: 72 FVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAG 104
>gi|71897051|ref|NP_001026518.1| cold-inducible RNA-binding protein [Gallus gallus]
gi|53128363|emb|CAG31295.1| hypothetical protein RCJMB04_4m1 [Gallus gallus]
Length = 190
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|426229493|ref|XP_004008825.1| PREDICTED: cold-inducible RNA-binding protein [Ovis aries]
Length = 171
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|974605|gb|AAA75104.1| single-stranded nucleic acid binding protein [Triticum aestivum]
Length = 167
Score = 75.1 bits (183), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 56/81 (69%), Gaps = 1/81 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ +++++++ F +YG ++ KI+NDR T R + +GFVTFG+ S AI
Sbjct: 5 EYRCFVGGLAWATDDNNLQQAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQAI 64
Query: 98 NDMNGRTIDGRVVRVSEVATR 118
+MNG+ +DGR + V+E +R
Sbjct: 65 EEMNGKELDGRNITVNEAQSR 85
>gi|330847369|gb|AEC46650.1| cold inducible RNA binding protein transcript variant 2 [Sus
scrofa]
Length = 182
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRDFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|6911146|gb|AAF31404.1|AF200323_1 putative glycine-rich RNA-binding protein 2 [Catharanthus roseus]
Length = 160
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 55/82 (67%), Gaps = 1/82 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL ++ + S+ + F +YG V+ K++NDR T R + +GFVTFG+ +S
Sbjct: 3 SADVEFRCFVGGLAWATTDQSLSEAFSQYGEVLESKVINDRETGRSRGFGFVTFGDEKSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+T+DGR + V+E
Sbjct: 63 KDAIVGMNGQTLDGRNITVNEA 84
>gi|296232406|ref|XP_002761576.1| PREDICTED: cold-inducible RNA-binding protein [Callithrix jacchus]
Length = 172
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|221220658|gb|ACM08990.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|304376965|gb|ACI70202.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 161
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + E S+ + F KYG++ ++ DR T R + +GFV + NP A
Sbjct: 1 MSDEGKLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA++ MNG+++DGR +RV+E
Sbjct: 61 DAMDAMNGQSLDGRTIRVNEAG 82
>gi|198285593|gb|ACH85335.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219546|gb|ACM08434.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 160
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + E S+ + F KYG++ ++ DR T R + +GFV + NP A
Sbjct: 1 MSDEGKLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA++ MNG+++DGR +RV+E
Sbjct: 61 DAMDAMNGQSLDGRTIRVNEAG 82
>gi|431922216|gb|ELK19307.1| Cold-inducible RNA-binding protein [Pteropus alecto]
Length = 220
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|351699548|gb|EHB02467.1| Cold-inducible RNA-binding protein, partial [Heterocephalus glaber]
Length = 167
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 60/96 (62%), Gaps = 4/96 (4%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHG 132
+ MNG+++DGR +RV + G+ S+S +R G
Sbjct: 64 MMAMNGKSVDGRQIRVDQA---GKSSDSRSRGYRGG 96
>gi|403308137|ref|XP_003944528.1| PREDICTED: cold-inducible RNA-binding protein isoform 1 [Saimiri
boliviensis boliviensis]
gi|403308139|ref|XP_003944529.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Saimiri
boliviensis boliviensis]
Length = 172
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|301776322|ref|XP_002923559.1| PREDICTED: cold-inducible RNA-binding protein-like [Ailuropoda
melanoleuca]
Length = 172
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|326918654|ref|XP_003205603.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Meleagris gallopavo]
Length = 170
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|426386443|ref|XP_004059694.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Gorilla
gorilla gorilla]
gi|426386445|ref|XP_004059695.1| PREDICTED: cold-inducible RNA-binding protein isoform 3 [Gorilla
gorilla gorilla]
Length = 168
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|118489085|gb|ABK96349.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 171
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M+ + E +VGGL ++ + +++ F +YG ++ KI+NDR T R + +GFVTFGN ++
Sbjct: 1 MSAEVEYRCFVGGLAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
DAI+ MNG+ +DGR + V+E
Sbjct: 61 MRDAIDGMNGQDLDGRNITVNEA 83
>gi|118481677|gb|ABK92779.1| unknown [Populus trichocarpa]
gi|118481702|gb|ABK92791.1| unknown [Populus trichocarpa]
gi|118482754|gb|ABK93295.1| unknown [Populus trichocarpa]
gi|118483202|gb|ABK93505.1| unknown [Populus trichocarpa]
Length = 170
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M+ + E +VGGL ++ + +++ F +YG ++ KI+NDR T R + +GFVTFGN ++
Sbjct: 1 MSAEVEYRCFVGGLAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
DAI+ MNG+ +DGR + V+E
Sbjct: 61 MRDAIDGMNGQDLDGRNITVNEA 83
>gi|344307815|ref|XP_003422574.1| PREDICTED: LOW QUALITY PROTEIN: cold-inducible RNA-binding
protein-like [Loxodonta africana]
Length = 169
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 9/102 (8%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA------TRGRKSNS--GRDQFR 130
+ MNG+++DGR +RV + +RG + S GR FR
Sbjct: 64 MMAMNGKSVDGRQIRVDQAGKSSDNRSRGYXAASAGGRGFFR 105
>gi|281341352|gb|EFB16936.1| hypothetical protein PANDA_012739 [Ailuropoda melanoleuca]
Length = 167
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|209734900|gb|ACI68319.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|303657347|gb|ADM15872.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 114
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + E S+ + F KYG++ ++ DR T R + +GFV + NP A
Sbjct: 1 MSDEGKLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA++ MNG+++DGR +RV+E
Sbjct: 61 DAMDAMNGQSLDGRTIRVNEAG 82
>gi|213513270|ref|NP_001133190.1| hyperosmotic glycine rich protein [Salmo salar]
gi|197632401|gb|ACH70924.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 126
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + E S+ + F KYG++ ++ DR T R + +GFV + NP A
Sbjct: 1 MSDEGKLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA++ MNG+++DGR +RV+E
Sbjct: 61 DAMDAMNGQSLDGRTIRVNEAG 82
>gi|387018172|gb|AFJ51204.1| Cold-inducible RNA-binding protein-like [Crotalus adamanteus]
Length = 172
Score = 74.7 bits (182), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|395831301|ref|XP_003788741.1| PREDICTED: cold-inducible RNA-binding protein [Otolemur garnettii]
Length = 172
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE +++GGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFIGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|728594|emb|CAA88558.1| glycine rich protein, RNA binding protein [Hordeum vulgare subsp.
vulgare]
Length = 173
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
+ E +VGGL ++ ++ +++ F +YG ++ KI+NDR T R + +GFVTFG+ S
Sbjct: 3 ETEYRCFVGGLAWATDDHNLQAAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQ 62
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI +MNG+ +DGR V V+E +R
Sbjct: 63 AIEEMNGKELDGRQVTVNEAQSR 85
>gi|330847367|gb|AEC46649.1| cold inducible RNA binding protein transcript variant 1 [Sus
scrofa]
Length = 172
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRDFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|185133178|ref|NP_001117016.1| hyperosmotic glycine rich protein [Salmo salar]
gi|28173040|gb|AAO32675.1| hyperosmotic glycine rich protein [Salmo salar]
Length = 205
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + E S+ + F KYG++ ++ DR T R + +GFV + NP A
Sbjct: 1 MSDEGKLFVGGLSFDTTEQSLAEAFSKYGNISKCDVIMDRETGRPRGFGFVKYDNPEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA++ MNG+++DGR +RV+E
Sbjct: 61 DAMDAMNGQSLDGRTIRVNEAG 82
>gi|355702927|gb|EHH29418.1| hypothetical protein EGK_09841 [Macaca mulatta]
Length = 202
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|355755275|gb|EHH59022.1| hypothetical protein EGM_09015 [Macaca fascicularis]
Length = 202
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|326493798|dbj|BAJ85361.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 175
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
+ E +VGGL ++ ++ +++ F +YG ++ KI+NDR T R + +GFVTFG+ S
Sbjct: 3 ETEYRCFVGGLAWATDDHNLQAAFSQYGEILDAKIINDRETGRSRGFGFVTFGSEESMRQ 62
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI +MNG+ +DGR + V+E +R
Sbjct: 63 AIEEMNGKELDGRSITVNEAQSR 85
>gi|410343221|gb|JAA40557.1| cold inducible RNA binding protein [Pan troglodytes]
Length = 203
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 35 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 94
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 95 MMAMNGKSVDGRQIRVDQAG 114
>gi|73987334|ref|XP_868600.1| PREDICTED: cold-inducible RNA-binding protein isoform 2 [Canis
lupus familiaris]
Length = 185
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|30692254|ref|NP_849523.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|332661645|gb|AEE87045.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 126
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ N++ +++ F ++G V+ KI+NDR S R + +GFVTF + ++ DAI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 98 NDMNGRTIDGRVVRVSEV 115
+MNG+ +DGRV+ V+E
Sbjct: 65 EEMNGKELDGRVITVNEA 82
>gi|15235002|ref|NP_195637.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
gi|544425|sp|Q03251.1|GRP8_ARATH RecName: Full=Glycine-rich RNA-binding protein 8; AltName:
Full=Protein CCR1
gi|16305|emb|CAA78712.1| glycine rich protein [Arabidopsis thaliana]
gi|166658|gb|AAA20201.1| ORF [Arabidopsis thaliana]
gi|166839|gb|AAA32854.1| RNA-binding protein [Arabidopsis thaliana]
gi|4914438|emb|CAB43641.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
gi|7270909|emb|CAB80589.1| glycine-rich protein (clone AtGRP8) [Arabidopsis thaliana]
gi|222423067|dbj|BAH19515.1| AT4G39260 [Arabidopsis thaliana]
gi|332661644|gb|AEE87044.1| glycine-rich RNA-binding protein 8 [Arabidopsis thaliana]
Length = 169
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ N++ +++ F ++G V+ KI+NDR S R + +GFVTF + ++ DAI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 98 NDMNGRTIDGRVVRVSEV 115
+MNG+ +DGRV+ V+E
Sbjct: 65 EEMNGKELDGRVITVNEA 82
>gi|77735511|ref|NP_001029450.1| cold-inducible RNA-binding protein [Bos taurus]
gi|74353851|gb|AAI02774.1| Cold inducible RNA binding protein [Bos taurus]
gi|296485364|tpg|DAA27479.1| TPA: cold inducible RNA binding protein [Bos taurus]
Length = 213
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|345313668|ref|XP_001512332.2| PREDICTED: cold-inducible RNA-binding protein-like [Ornithorhynchus
anatinus]
Length = 270
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|224077836|ref|XP_002305429.1| predicted protein [Populus trichocarpa]
gi|118481826|gb|ABK92850.1| unknown [Populus trichocarpa]
gi|222848393|gb|EEE85940.1| predicted protein [Populus trichocarpa]
Length = 165
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M + E +VGGL ++ + S+++ F +YG ++ KI+NDR T R + +GFVTF N ++
Sbjct: 1 MAAEVEYRCFVGGLAWATTDQSLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFNNEKA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
DAI+ MNG+ +DGR + V+E
Sbjct: 61 MRDAIDGMNGQDLDGRNITVNEA 83
>gi|90076360|dbj|BAE87860.1| unnamed protein product [Macaca fascicularis]
Length = 207
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|47271546|ref|NP_112409.2| cold-inducible RNA-binding protein [Rattus norvegicus]
gi|46623308|gb|AAH69219.1| Cold inducible RNA binding protein [Rattus norvegicus]
Length = 172
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|307109660|gb|EFN57897.1| hypothetical protein CHLNCDRAFT_141933 [Chlorella variabilis]
Length = 505
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG L Y +E +VRK F+ YG+VV VK++ D+ T R K +GFV+F + R A DA+ND
Sbjct: 33 TIYVGQLRYDTDERTVRKWFEAYGTVVTVKLIYDKETGRSKGFGFVSFEDDRDARDALND 92
Query: 100 MNGRTIDGRVVRV 112
GR +DG ++V
Sbjct: 93 AGGRDLDGAAIKV 105
>gi|6680946|ref|NP_031731.1| cold-inducible RNA-binding protein [Mus musculus]
gi|346644681|ref|NP_001231002.1| cold-inducible RNA-binding protein [Cricetulus griseus]
gi|46395643|sp|P60826.1|CIRBP_CRIGR RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|46397383|sp|P60825.1|CIRBP_RAT RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|46397384|sp|P60824.1|CIRBP_MOUSE RecName: Full=Cold-inducible RNA-binding protein; AltName: Full=A18
hnRNP; AltName: Full=Glycine-rich RNA-binding protein
CIRP
gi|1060919|dbj|BAA11213.1| CIRP [Mus musculus]
gi|1783168|dbj|BAA19092.1| CIRP [Rattus norvegicus]
gi|12852647|dbj|BAB29491.1| unnamed protein product [Mus musculus]
gi|34099624|gb|AAQ57122.1| cold-inducible RNA binding protein [Cricetulus griseus]
gi|49522692|gb|AAH75699.1| Cold inducible RNA binding protein [Mus musculus]
gi|74209036|dbj|BAE21245.1| unnamed protein product [Mus musculus]
gi|115345819|gb|ABI95367.1| cold-inducible RNA-binding protein [Cricetulus griseus]
gi|148699640|gb|EDL31587.1| cold inducible RNA binding protein, isoform CRA_c [Mus musculus]
gi|149034580|gb|EDL89317.1| cold inducible RNA binding protein, isoform CRA_c [Rattus
norvegicus]
gi|149034581|gb|EDL89318.1| cold inducible RNA binding protein, isoform CRA_c [Rattus
norvegicus]
Length = 172
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|2267567|gb|AAB63581.1| glycine-rich RNA binding protein 1 [Pelargonium x hortorum]
gi|2267569|gb|AAB63582.1| glycine-rich RNA binding protein 2 [Pelargonium x hortorum]
Length = 166
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL ++ ++ ++ + F +YG VV KI+NDR T R + +GFVTF N +S
Sbjct: 3 SADVEYRCFVGGLAWATDDHALEQAFSQYGEVVESKIINDRETGRSRGFGFVTFSNEKSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+ +DGR + V+E
Sbjct: 63 NDAIEGMNGQNLDGRNITVNEA 84
>gi|357473251|ref|XP_003606910.1| Glycine-rich RNA binding protein [Medicago truncatula]
gi|355507965|gb|AES89107.1| Glycine-rich RNA binding protein [Medicago truncatula]
Length = 161
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + +++ K F +YG +V KI+NDR T R + +GFVTF N +S D
Sbjct: 3 DVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V++
Sbjct: 63 AIEAMNGQDLDGRNITVNQA 82
>gi|387913830|gb|AFK10524.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873312|gb|AFM85488.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873324|gb|AFM85494.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873420|gb|AFM85542.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873526|gb|AFM85595.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392873598|gb|AFM85631.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
gi|392877296|gb|AFM87480.1| cold inducible RNA binding protein isoform 3 [Callorhinchus milii]
Length = 136
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ +E ++VGGL ++ E S+ +VF +YG V V+I+ DR T + +GFVTF +P A
Sbjct: 1 MSEERKLFVGGLNFNTEEQSLEEVFSEYGQVSEVRIIRDRDTGTSRGFGFVTFESPDDAQ 60
Query: 95 DAINDMNGRTIDGRVVRV 112
DA+ MNGR+++GR +RV
Sbjct: 61 DALTSMNGRSLEGRQIRV 78
>gi|148231554|ref|NP_001080069.1| cold-inducible RNA-binding protein A [Xenopus laevis]
gi|284018072|sp|O93235.2|CIRBA_XENLA RecName: Full=Cold-inducible RNA-binding protein A; AltName:
Full=Cold-inducible RNA-binding protein; Short=XCIRP;
AltName: Full=Cold-inducible RNA-binding protein 1;
Short=XCIRP-1; AltName: Full=Glycine-rich RNA-binding
protein CIRP-A
gi|27735413|gb|AAH41204.1| Cirbp-prov protein [Xenopus laevis]
Length = 166
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NED + + F KYG + V +V DR T R + +GFVTF N A
Sbjct: 1 MSDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+++DGR +RV +
Sbjct: 61 DAMMAMNGKSVDGRQIRVDQAG 82
>gi|119589928|gb|EAW69522.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
gi|119589930|gb|EAW69524.1| cold inducible RNA binding protein, isoform CRA_c [Homo sapiens]
Length = 297
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|115529229|dbj|BAF34340.1| putative glycine-rich RNA-binding protein [Dianthus caryophyllus]
Length = 163
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL + ++ S+ + F+K+G V KI+NDR T R + +GFVTF N +S DAI++MN
Sbjct: 9 FVGGLSWGTDDRSLAEAFNKFGEVTDSKIINDRETGRSRGFGFVTFANEQSMRDAIDEMN 68
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 69 GKELDGRSITVNEA 82
>gi|73987338|ref|XP_868602.1| PREDICTED: cold-inducible RNA-binding protein isoform 4 [Canis
lupus familiaris]
Length = 219
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 51 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 110
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 111 MMAMNGKSVDGRQIRVDQAG 130
>gi|148699639|gb|EDL31586.1| cold inducible RNA binding protein, isoform CRA_b [Mus musculus]
Length = 176
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|311780287|gb|ADQ08684.1| putative glycine-rich RNA-binding protein 1 [Malus hupehensis]
Length = 164
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + +++ + F +YG ++ KI+NDR T R + +GFVTFG+ ++ DAI MN
Sbjct: 11 FVGGLAWATDNEALERAFSQYGEIIESKIINDRETGRSRGFGFVTFGSEQAMRDAIEGMN 70
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 71 GQNLDGRNITVNEA 84
>gi|296142019|gb|ADG96008.1| putative glycine-rich RNA-binding protein 1 [Malus prunifolia]
Length = 171
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + +++ + F +YG ++ KI+NDR T R + +GFVTFG+ ++ DAI MN
Sbjct: 11 FVGGLAWATDNEALERAFSQYGEIIESKIINDRETGRSRGFGFVTFGSEQAMRDAIEGMN 70
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 71 GQNLDGRNITVNEA 84
>gi|356538787|ref|XP_003537882.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Glycine
max]
Length = 170
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL + D++ K F YG +V K++NDR T R + +GFVTF + +S
Sbjct: 3 SADVEFRCFVGGLAWVTGNDALEKAFSIYGDIVESKVINDRETGRSRGFGFVTFASEQSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEVATR 118
DAI MNG+ +DGR + V+E TR
Sbjct: 63 KDAIAGMNGQDLDGRNITVNEAQTR 87
>gi|351725469|ref|NP_001238373.1| glycine-rich RNA-binding protein [Glycine max]
gi|5726567|gb|AAD48471.1|AF169205_1 glycine-rich RNA-binding protein [Glycine max]
Length = 160
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL ++ ++ ++ + F +YG +V KI+NDR T R + +GFVTF + +S
Sbjct: 3 SADVEYRCFVGGLAWATDDHALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+ +DGR + V+E
Sbjct: 63 KDAIGAMNGQNLDGRNITVNEA 84
>gi|2674201|gb|AAC61786.1| glycine-rich RNA-binding protein [Euphorbia esula]
Length = 164
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M+ D E +VGGL ++ + S+++ F YG ++ KI+NDR T R + +GFVTF N +S
Sbjct: 1 MSADIEYRCFVGGLAWATTDQSLQEAFSPYGEILDSKIINDRETGRSRGFGFVTFNNEKS 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
DAI MN + +DGR + V+E
Sbjct: 61 MRDAIQGMNSQELDGRNITVNEA 83
>gi|148699638|gb|EDL31585.1| cold inducible RNA binding protein, isoform CRA_a [Mus musculus]
gi|149034578|gb|EDL89315.1| cold inducible RNA binding protein, isoform CRA_b [Rattus
norvegicus]
gi|149034579|gb|EDL89316.1| cold inducible RNA binding protein, isoform CRA_b [Rattus
norvegicus]
Length = 168
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|7439974|pir||JC6571 cold-inducible RNA-binding protein homolog - clawed frog
gi|3341887|dbj|BAA31861.1| cold-inducible RNA binding protein [Xenopus laevis]
Length = 163
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NED + + F KYG + V +V DR T R + +GFVTF N A
Sbjct: 1 MSDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+++DGR +RV +
Sbjct: 61 DAMMAMNGKSVDGRQIRVDQAG 82
>gi|6911144|gb|AAF31403.1|AF200322_1 putative glycine-rich RNA binding protein 3 [Catharanthus roseus]
Length = 164
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL ++ + S+ + F +YG ++ KI+NDR T R + +GFVTF + +S
Sbjct: 3 SADVEYRCFVGGLAWATTDQSLSEAFSQYGEILESKIINDRETGRSRGFGFVTFKDEQSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+T+DGR + V+E
Sbjct: 63 RDAIEGMNGQTLDGRNITVNEA 84
>gi|356541091|ref|XP_003539016.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 207
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ + F +YG +V KI+NDR T R + +GFVTF + +S D
Sbjct: 41 DVEYRCFVGGLAWATDDQALERAFSQYGEIVETKIINDRETGRSRGFGFVTFASEQSMKD 100
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 101 AIEGMNGQNLDGRNITVNEA 120
>gi|149034582|gb|EDL89319.1| cold inducible RNA binding protein, isoform CRA_d [Rattus
norvegicus]
gi|149034583|gb|EDL89320.1| cold inducible RNA binding protein, isoform CRA_d [Rattus
norvegicus]
Length = 176
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|303668381|gb|ADM16300.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 121
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + E+S+ + F KYG++ V ++ D+ T R + +GFV + N A
Sbjct: 1 MSDEGKLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
DA++ MNG+++DGR +RV E
Sbjct: 61 DALDGMNGKSVDGRTIRVDEA 81
>gi|344243389|gb|EGV99492.1| Cold-inducible RNA-binding protein [Cricetulus griseus]
Length = 184
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|255571962|ref|XP_002526922.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223533674|gb|EEF35409.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 166
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ + F YG V+ KI+NDR T R + +GFVTF N +S D
Sbjct: 5 DIEYRCFVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEKSMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGQNLDGRNITVNEA 84
>gi|18076086|emb|CAC80549.1| glycine-rich RNA-binding protein [Ricinus communis]
Length = 165
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ + F YG V+ KI+NDR T R + +GFVTF N +S D
Sbjct: 5 DIEYRCFVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEKSMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGQNLDGRNITVNEA 84
>gi|223647416|gb|ACN10466.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 193
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + E+S+ + F KYG++ V ++ D+ T R + +GFV + N A
Sbjct: 1 MSDEGKLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
DA+ MNG+++DGR +RV E
Sbjct: 61 DALEGMNGKSVDGRTIRVDEA 81
>gi|162455692|ref|YP_001618059.1| RNA recognition motif-containing protein [Sorangium cellulosum So
ce56]
gi|161166274|emb|CAN97579.1| RNA-binding region RNP-1 (RNA recognition motif) [Sorangium
cellulosum So ce56]
Length = 139
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
+YVG LP+SA + SV+ F + G V V IV DR S + + +GFVT G P A AI +M
Sbjct: 5 LYVGNLPFSATKASVQAAFAQSGEVTDVHIVTDRESGQSRGFGFVTMGTPEQAQQAIENM 64
Query: 101 NGRTIDGRVVRVSEVATR 118
NG +DGR +RV+E R
Sbjct: 65 NGAMMDGRPLRVNEAEER 82
>gi|340727255|ref|XP_003401963.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Bombus
terrestris]
Length = 139
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGLPY E V VF +YG VV + ++ D++T + K YGF+ + N +S V A
Sbjct: 32 DSAWIFIGGLPYDLTEGDVITVFSQYGEVVNINLIRDKNTGKQKGYGFLCYENQKSTVLA 91
Query: 97 INDMNGRTIDGRVVRVSEVA 116
++++NG I GR++RV VA
Sbjct: 92 VDNLNGIKILGRIIRVDHVA 111
>gi|82248148|sp|Q9PTX2.1|CIRBP_RANCA RecName: Full=Cold-inducible RNA-binding protein; Short=BFCIRP;
AltName: Full=Glycine-rich RNA-binding protein CIRP
gi|6682989|dbj|BAA88978.1| BFCIRP [Rana catesbeiana]
Length = 164
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + +E + VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSN 123
+ MNG+T+DGR +RV + G+ SN
Sbjct: 64 MAGMNGKTVDGRQIRVDQA---GKSSN 87
>gi|357473273|ref|XP_003606921.1| Glycine-rich RNA binding protein [Medicago truncatula]
gi|355507976|gb|AES89118.1| Glycine-rich RNA binding protein [Medicago truncatula]
Length = 164
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL ++ + +++ K F +YG ++ KI+NDR T R + +GFVTF + +S
Sbjct: 3 SADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+ +DGR + V+E
Sbjct: 63 RDAIEGMNGQDMDGRNITVNEA 84
>gi|2645699|gb|AAC61787.1| glycine-rich RNA-binding protein [Euphorbia esula]
Length = 165
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M+ D E +VGGL ++ + S+++ F YG ++ KI+NDR T R + +GFVTF N +S
Sbjct: 1 MSADIEYRCFVGGLAWATTDQSLQEAFSPYGEILDSKIINDRETGRSRGFGFVTFNNEKS 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
DAI MN + +DGR V+E
Sbjct: 61 MRDAIQGMNSQELDGRNTTVNEA 83
>gi|343958808|dbj|BAK63259.1| cold-inducible RNA-binding protein [Pan troglodytes]
Length = 225
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGSGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>gi|312282683|dbj|BAJ34207.1| unnamed protein product [Thellungiella halophila]
Length = 166
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M+ D E +VGGL ++ + + + F ++G V+ KI+NDR T R + +GFVTF + +S
Sbjct: 1 MSTDVEYRCFVGGLAWATADADLERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKS 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
DAI +MNG+ +DGR + V+E
Sbjct: 61 MRDAIEEMNGKELDGRSITVNEA 83
>gi|281203518|gb|EFA77718.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 341
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+ S +++ LP + + ++ +F YG+V++ K+ D++T + KC+GFVT+ NP+SA++A
Sbjct: 259 ESSDLFIYYLPQNYGDLELKMLFQTYGNVISAKVFIDKATNQSKCFGFVTYDNPQSALNA 318
Query: 97 INDMNGRTIDGRVVRVS 113
IND+NG I+G+ ++V+
Sbjct: 319 INDLNGFAIEGKKLKVN 335
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
E +++G L SA+ED+V VF KYG++ + IV ++ R K YGF+ F A DAI
Sbjct: 101 ERKLFIGMLG-SADEDTVTSVFGKYGAIEELTIVREKEGRPKGYGFIKFSAREEAEDAIR 159
Query: 99 DMNGR-TIDGRVVRV 112
+++G+ T G + +
Sbjct: 160 ELDGKHTFAGSSIPL 174
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAINDM 100
V+VG +P S E+ + +F+K+G+++ + I+ D+ T K F++F A AIN +
Sbjct: 15 VFVGHIPLSFKEEELSGIFEKFGNILNISIIKDKRTNVPKGCAFISFSTKEEADLAINTV 74
Query: 101 N 101
N
Sbjct: 75 N 75
>gi|34785785|gb|AAH57481.1| Cirbp protein [Danio rerio]
Length = 121
Score = 72.0 bits (175), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/71 (47%), Positives = 47/71 (66%), Gaps = 1/71 (1%)
Query: 45 GGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR 103
GGL Y E S+ + F KYG++ V ++ DR T R + +GFVTF NP A DA+ MNG+
Sbjct: 3 GGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGK 62
Query: 104 TIDGRVVRVSE 114
+DGR++RV E
Sbjct: 63 QVDGRMIRVDE 73
>gi|356517068|ref|XP_003527212.1| PREDICTED: uncharacterized protein LOC100777821 [Glycine max]
Length = 182
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + D++ K F ++G +V K++NDR T R + +GFVTF ++ DAI MN
Sbjct: 11 FVGGLAWATDHDALEKAFSQFGEIVESKVINDRETGRSRGFGFVTFATEQAMRDAIEGMN 70
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 71 GQNLDGRNITVNEA 84
>gi|148695099|gb|EDL27046.1| mCG129611 [Mus musculus]
Length = 172
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Query: 23 VIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKC 81
+ FN + M+ +E + VGGL ++ +E ++ F +G + V +V DR T R
Sbjct: 9 LTFNFQDLPSAMS-SEEGKLVVGGLNFNTHEQALENYFSSFGPISEVVVVKDRETQRSWG 67
Query: 82 YGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRD 141
+GF+TF NP A DA+ MNG ++DGR +RV R S G R GH + RD
Sbjct: 68 FGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGKSARGSRGGAFGGR-GHSYSRGGRD 126
Query: 142 NNRHRDRY 149
RY
Sbjct: 127 QGYGSGRY 134
>gi|34851124|gb|AAL13082.1| putative glycine-rich RNA-binding protein [Prunus avium]
Length = 178
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + D++ + F +G ++ KI+NDR T R + +GFVTF N ++ DAI MN
Sbjct: 11 FVGGLAWATDNDALERAFSPFGEIIESKIINDRETGRSRGFGFVTFSNEKAMRDAIEGMN 70
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 71 GQNLDGRNITVNEA 84
>gi|544426|sp|Q03878.1|GRP1_DAUCA RecName: Full=Glycine-rich RNA-binding protein
gi|18347|emb|CAA41152.1| glycine-rich protein [Daucus carota]
gi|445138|prf||1908438A Gly-rich protein
Length = 157
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ N++S+ + F ++G + KI+NDR T R + +GFVTF + +S DAI MN
Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 69 GQELDGRNITVNEA 82
>gi|432099499|gb|ELK28647.1| Heterogeneous nuclear ribonucleoprotein G-like 1 [Myotis davidii]
Length = 535
Score = 71.6 bits (174), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/115 (37%), Positives = 65/115 (56%), Gaps = 6/115 (5%)
Query: 5 EGGRQGVSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYG 64
EGG G V KA I + +E + D +++GGL NE ++ VF KYG
Sbjct: 146 EGGNPGS----WVRSKAEAIRDSYQEGNMVEADRPGKLFIGGLNTETNEKALEAVFGKYG 201
Query: 65 SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118
+V V ++ DR T + + + FVTF +P A DA DMNG+++DG+ ++V E AT+
Sbjct: 202 RIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKV-EQATK 255
>gi|350423156|ref|XP_003493401.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Bombus
impatiens]
Length = 139
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGLPY E V VF +YG VV + ++ D++T + K YGF+ + N +S V A
Sbjct: 32 DSAWIFIGGLPYDLTEGDVITVFSQYGEVVNINLIRDKNTGKQKGYGFLCYENQKSTVLA 91
Query: 97 INDMNGRTIDGRVVRVSEVA 116
++++NG I GR +RV VA
Sbjct: 92 VDNLNGIKILGRTIRVDHVA 111
>gi|410924411|ref|XP_003975675.1| PREDICTED: cold-inducible RNA-binding protein-like [Takifugu
rubripes]
Length = 170
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NE+S+ + F KYG++ V ++ D+ T R + +GFV + + A
Sbjct: 1 MSDEGKLFIGGLSFETNEESLAEAFGKYGTIEKVDVIRDKETGRSRGFGFVKYESVEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+++DGR +RV E
Sbjct: 61 DAMTAMNGKSLDGRAIRVDEAG 82
>gi|469072|dbj|BAA03743.1| RNA-binding gricine-rich protein-1c [Nicotiana sylvestris]
Length = 165
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ + ++ + F +YG V+ KI+NDR T R + +GFVTFG+ +S DAI
Sbjct: 5 EYRCFVGGLAWATTDRTLGEAFSQYGEVLESKIINDRETGRSRGFGFVTFGDEKSMRDAI 64
Query: 98 NDMNGRTIDGRVVRVSEV 115
MNG+ +DGR + V+E
Sbjct: 65 EGMNGQDLDGRNITVNEA 82
>gi|544416|sp|Q05966.1|GRP10_BRANA RecName: Full=Glycine-rich RNA-binding protein 10
gi|17819|emb|CAA78513.1| glycine-rich RNA binding protein [Brassica napus]
Length = 169
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + + + F ++G V+ KI+NDR T R + +GFVTF + +S DAI++MN
Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 69 GKELDGRTITVNEA 82
>gi|332026997|gb|EGI67093.1| RNA-binding motif protein, X-linked 2 [Acromyrmex echinatior]
Length = 172
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + ++VGGLPY+ E V +F +YG VV + ++ D+ T + K YGF+ + + RS + A
Sbjct: 65 DSAWIFVGGLPYNLTEGDVIAIFSQYGEVVNINLIRDKDTGKQKGYGFLCYEDQRSTILA 124
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+++ NG I GRV+RV V+
Sbjct: 125 VDNFNGIKILGRVIRVDHVS 144
>gi|213510736|ref|NP_001133148.1| cold inducible RNA binding protein [Salmo salar]
gi|197632151|gb|ACH70799.1| hyperosmotic glycine rich protein-like [Salmo salar]
gi|221219968|gb|ACM08645.1| Cold-inducible RNA-binding protein [Salmo salar]
gi|221221054|gb|ACM09188.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 154
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + E S+ + F KYG++ ++ DR T R + +GFV + N A
Sbjct: 1 MSDEGKLFVGGLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
DA+ MNG+++DGR +RV+E
Sbjct: 61 DAMEGMNGQSLDGRTIRVNEA 81
>gi|9964085|gb|AAG09816.1|AF278702_1 cold-inducible RNA binding protein XCIRP-1 [Xenopus laevis]
Length = 166
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NE + + F KYG + V +V DR T R + +GFVTF N A
Sbjct: 1 MSDEGKLFIGGLNFETNEGCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+++DGR +RV +
Sbjct: 61 DAMMAMNGKSVDGRQIRVDQAG 82
>gi|421976742|gb|AFX73254.1| glycine rich RNA binding protein 1a [Solanum lycopersicum]
Length = 164
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M + E S +VGGL ++ + ++ F YG VV KI+NDR T R + +GFVTF + +S
Sbjct: 1 MAAEVEYSCFVGGLAWATTDRTLSDAFSTYGEVVDSKIINDRETGRSRGFGFVTFKDEKS 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
DAI+ MNG+ +DGR + V+E
Sbjct: 61 MKDAISGMNGQELDGRNITVNEA 83
>gi|221221302|gb|ACM09312.1| Cold-inducible RNA-binding protein [Salmo salar]
Length = 131
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + E S+ + F KYG++ ++ DR T R + +GFV + N A
Sbjct: 1 MSDEGKLFVGGLSFDTTEQSLAEAFSKYGNIAKCDVIMDRETGRPRGFGFVKYDNAEDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
DA+ MNG+++DGR +RV+E
Sbjct: 61 DAMEGMNGQSLDGRTIRVNEA 81
>gi|218193471|gb|EEC75898.1| hypothetical protein OsI_12955 [Oryza sativa Indica Group]
Length = 139
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG ++ KI+NDR T R + +GFVTF + +S D
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 65 AIEGMNGKELDGRNITVNEAQSR 87
>gi|348553582|ref|XP_003462605.1| PREDICTED: putative RNA-binding protein 3-like [Cavia porcellus]
Length = 159
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL +S +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFSTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHG 132
+ MNG ++DGR +RV R + G HG
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGGGAFGAHG 99
>gi|297793663|ref|XP_002864716.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
gi|297310551|gb|EFH40975.1| hypothetical protein ARALYDRAFT_358310 [Arabidopsis lyrata subsp.
lyrata]
Length = 327
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GG+ YS +EDS+R+ F KYG VV +++ DR T R + +GFVTF + +A AI
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVETRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 99 DMNGRTIDGRVVRV 112
++GR + GRVV+V
Sbjct: 100 ALDGRDLHGRVVKV 113
>gi|260221864|emb|CBA30852.1| Putative RNA-binding protein rbpB [Curvibacter putative symbiont of
Hydra magnipapillata]
Length = 124
Score = 70.5 bits (171), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 7/106 (6%)
Query: 28 IEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
+ ER+ M+ S +YVG LPYS +DS++ F ++G V + K++ DR T R K + FV
Sbjct: 21 LTERLTMS----SKIYVGNLPYSVTDDSLQSNFSEFGEVTSAKVMMDRDTGRSKGFAFVE 76
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHG 132
P A AI+ +NG+++DGR + V+ R R+ G D +R G
Sbjct: 77 MSTPAFAQAAIDGLNGQSVDGRSIVVN--LARPREDRGGSDGYRGG 120
>gi|20152613|emb|CAD29693.1| putative glycine rich protein [Rumex obtusifolius]
Length = 168
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M + E +VGGL ++ ++ S+ + F YG V+ KI+NDR T R + +GFVTF + ++
Sbjct: 1 MDAEVEYRCFVGGLAWATDDQSLERAFSNYGQVLESKIINDRETGRSRGFGFVTFSSEQA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+ +DGR + V+E
Sbjct: 61 MRDAIEGMNGQDLDGRNITVNEA 83
>gi|1346181|sp|P49311.1|GRP2_SINAL RecName: Full=Glycine-rich RNA-binding protein GRP2A
gi|496237|gb|AAA59213.1| homology with RNA-binding proteins in meristematic tissue [Sinapis
alba]
Length = 169
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ +E S+ F ++G +V KI+NDR T R + +GFVTF + +S D
Sbjct: 5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
>gi|114691840|ref|XP_001139693.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 1 [Pan troglodytes]
gi|114691960|ref|XP_001135842.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 1 [Pan troglodytes verus]
Length = 460
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 51/80 (63%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE +++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKTLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V +
Sbjct: 64 AAKDMNGKSLDGKAIKVEQA 83
>gi|169244425|gb|ACA50486.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|306415963|gb|ADM86856.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|385718874|gb|AFI71864.1| Glycin-rich RNA binding protein [Oryza sativa]
Length = 161
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG ++ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 65 AIEGMNGKELDGRNITVNEAQSR 87
>gi|125537516|gb|EAY84004.1| hypothetical protein OsI_39235 [Oryza sativa Indica Group]
Length = 161
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG ++ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 65 AIEGMNGKELDGRNITVNEAQSR 87
>gi|114691838|ref|XP_001139951.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 3 [Pan troglodytes]
gi|114691958|ref|XP_001136088.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 3 [Pan troglodytes verus]
gi|410060470|ref|XP_003949299.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J [Pan troglodytes verus]
Length = 497
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 51/80 (63%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE +++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKTLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V +
Sbjct: 64 AAKDMNGKSLDGKAIKVEQA 83
>gi|431915005|gb|ELK15824.1| Heterogeneous nuclear ribonucleoprotein G [Pteropus alecto]
Length = 390
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG ++ V ++ DR T R + + F+TF NP A
Sbjct: 4 ADRPGKLFIGGLNIDTNEKALEAVFGKYGPIIEVLLMKDRETNRSRGFAFITFENPEDAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
DA DMNG+++DG++++V +
Sbjct: 64 DATKDMNGKSLDGKLIKVEQA 84
>gi|115462709|ref|NP_001054954.1| Os05g0223200 [Oryza sativa Japonica Group]
gi|55733832|gb|AAV59339.1| unknown protein [Oryza sativa Japonica Group]
gi|113578505|dbj|BAF16868.1| Os05g0223200 [Oryza sativa Japonica Group]
gi|215741183|dbj|BAG97678.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
ES VYVG LPY A+E S++ F YG+V + V+ + R + +GFV+F + +SA DAI
Sbjct: 22 ESRVYVGNLPYRADERSLKDSFSNYGAVSSEIAVDRETGRSRGFGFVSFQDSKSASDAIK 81
Query: 99 DMNGRTIDGRVVRVSEVATRGRK 121
MNG+ I GR V V E R R+
Sbjct: 82 GMNGQDIGGRNVIVQEAQPRSRR 104
>gi|17553656|ref|NP_499734.1| Protein CPF-2 [Caenorhabditis elegans]
gi|3877650|emb|CAB05746.1| Protein CPF-2 [Caenorhabditis elegans]
Length = 336
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG + Y +ED++R +F K G+V+++K+V+DR T + K YGF+ F + ++A AI +
Sbjct: 19 SVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRN 78
Query: 100 MNGRTIDGRVVRVSEVA 116
+NG + GR++RV A
Sbjct: 79 LNGYELSGRILRVDSAA 95
>gi|297825019|ref|XP_002880392.1| hypothetical protein ARALYDRAFT_481034 [Arabidopsis lyrata subsp.
lyrata]
gi|297326231|gb|EFH56651.1| hypothetical protein ARALYDRAFT_481034 [Arabidopsis lyrata subsp.
lyrata]
Length = 159
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL ++ ++ ++ F +YG VV KI+NDR T R + +GFVTF + +S
Sbjct: 3 SADVEYRCFVGGLAWATDDRALETAFSQYGDVVDSKIINDRETGRSRGFGFVTFKDEKSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+ +DGR + V+E
Sbjct: 63 KDAIEGMNGQELDGRSITVNEA 84
>gi|15239505|ref|NP_200911.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
gi|9759450|dbj|BAB10366.1| unnamed protein product [Arabidopsis thaliana]
gi|16974556|gb|AAL31194.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|21928059|gb|AAM78058.1| AT5g61030/maf19_30 [Arabidopsis thaliana]
gi|225879144|dbj|BAH30642.1| hypothetical protein [Arabidopsis thaliana]
gi|332010031|gb|AED97414.1| glycine-rich RNA-binding protein 3 [Arabidopsis thaliana]
Length = 309
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GG+ YS +EDS+R+ F KYG VV +++ DR T R + +GFVTF + +A AI
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 99 DMNGRTIDGRVVRV 112
++GR + GRVV+V
Sbjct: 100 ALDGRDLHGRVVKV 113
>gi|469071|dbj|BAA03742.1| RNA-binding glycine-rich protein-1b [Nicotiana sylvestris]
gi|295393565|gb|ADG03638.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 148
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E S +VGGL ++ + ++ F YG V+ KI+NDR T R + +GFVTF + + DAI
Sbjct: 5 EYSCFVGGLAWATTDRTLADAFGTYGEVLDSKIINDRETGRSRGFGFVTFKDEKCMRDAI 64
Query: 98 NDMNGRTIDGRVVRVSEVATRG 119
MNG+ +DGR + V+E RG
Sbjct: 65 EGMNGQELDGRSITVNEAQARG 86
>gi|121705054|ref|XP_001270790.1| ribonucleoprotein, chloroplast [Aspergillus clavatus NRRL 1]
gi|119398936|gb|EAW09364.1| ribonucleoprotein, chloroplast [Aspergillus clavatus NRRL 1]
Length = 514
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIND 99
+++VG LP+SANEDSV+++F + GS+V +++ D S R K +G+V F + A +A N
Sbjct: 370 TLFVGNLPFSANEDSVQELFGEKGSIVGIRLPTDPDSGRPKGFGYVQFASVDEAREAFNS 429
Query: 100 MNGRTIDGRVVRV 112
+NG +DGR VR+
Sbjct: 430 LNGAELDGRPVRL 442
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 22/120 (18%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
+++++G L ++ +ED +R+ F+ +G + V+IV DR S R + +G+V + + A A
Sbjct: 260 ANLFIGNLSWNVDEDWLRQEFETFGELSGVRIVTDRDSGRSRGFGYVEYVSAADAAKAYK 319
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDRSR 158
+DGR + + + AT GR + NN+ +QDR R+R
Sbjct: 320 AKKDTELDGRKINL-DYAT-GRPA-------------------NNQQGGGFQDRAQARAR 358
>gi|82623423|gb|ABB87126.1| putative glycine-rich RNA binding protein-like [Solanum tuberosum]
Length = 178
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++++ + F +YG VV KI+NDR T R + +GFVTF + ++ D
Sbjct: 3 DVEYRCFVGGLAWATTDNTLSEAFSQYGEVVESKIINDRETGRSRGFGFVTFKDEQAMRD 62
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 63 AIEGMNGQDLDGRNITVNEA 82
>gi|115454539|ref|NP_001050870.1| Os03g0670700 [Oryza sativa Japonica Group]
gi|108710321|gb|ABF98116.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
gi|113549341|dbj|BAF12784.1| Os03g0670700 [Oryza sativa Japonica Group]
Length = 196
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG ++ KI+NDR T R + +GFVTF + +S D
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 65 AIEGMNGKELDGRNITVNEAQSR 87
>gi|219880797|gb|ACL51672.1| truncated RNA binding motif protein Y-linked [Macaca mulatta]
Length = 231
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 9/108 (8%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
D +++GGL NE ++ VF K+G + V ++ DR+ + + + FVTF NP A +A
Sbjct: 5 DHPGKLFIGGLTRKTNEKMLKAVFVKHGPISEVLLIKDRTRKSRGFAFVTFENPEDAKNA 64
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNR 144
DMNG+++DG+ ++V + + F+ G R + NR
Sbjct: 65 AKDMNGKSLDGKAIKVEQAK---------KPSFQSGGRQRPPPSSRNR 103
>gi|356538789|ref|XP_003537883.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Glycine
max]
Length = 140
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ ++ ++ K F YG++V KI+NDR T R + +GFVTF + S DAI
Sbjct: 7 EYRCFVGGLAWATDDHALEKAFSHYGNIVESKIINDRETGRSRGFGFVTFASENSMKDAI 66
Query: 98 NDMNGRTIDGRVVRVSEV 115
MNG+ +DGR + V+E
Sbjct: 67 EGMNGQNLDGRNITVNEA 84
>gi|62638116|gb|AAX92663.1| RBMY1 [Pan troglodytes]
Length = 146
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +A
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64
Query: 97 INDMNGRTIDGRVVRVSEV 115
DMNG+++DG+ ++V +
Sbjct: 65 AKDMNGKSLDGKAIKVEQA 83
>gi|357473263|ref|XP_003606916.1| Glycine-rich RNA binding protein [Medicago truncatula]
gi|355507971|gb|AES89113.1| Glycine-rich RNA binding protein [Medicago truncatula]
Length = 190
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + ++ + F K+G + K++NDR T R + +GFVTF +S D
Sbjct: 5 DVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI +MNG+ IDGR + V+E
Sbjct: 65 AIEEMNGQDIDGRNITVNEA 84
>gi|4704605|gb|AAD28176.1|AF109917_1 glycine-rich RNA-binding protein [Picea glauca]
Length = 155
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL +S ++ S+++ F YG VV KI++DR T R + +GFVTF + +S
Sbjct: 3 SADVEFRCFVGGLAWSTDDRSLQEAFSPYGEVVESKIISDRETGRSRGFGFVTFNDEQSM 62
Query: 94 VDAINDMNGRTIDGRVVRV 112
DAI+ MNG+ +DGR + V
Sbjct: 63 RDAIDAMNGKMLDGRSITV 81
>gi|544423|sp|Q99070.1|GRP2_SORBI RecName: Full=Glycine-rich RNA-binding protein 2
gi|21625|emb|CAA40862.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 168
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ N +++ + F +G V+ K++ DR T R + +GFVTF + +S +D
Sbjct: 5 DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI +MNG+ +DGR + V++
Sbjct: 65 AIENMNGKELDGRNITVNQA 84
>gi|125551311|gb|EAY97020.1| hypothetical protein OsI_18941 [Oryza sativa Indica Group]
Length = 104
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
ES VYVG LPY A+E S++ F YG+V + V+ + R + +GFV+F + +SA DAI
Sbjct: 22 ESRVYVGNLPYRADERSLKDSFANYGAVSSEIAVDRETGRSRGFGFVSFQDSKSASDAIK 81
Query: 99 DMNGRTIDGRVVRVSEVATRGRK 121
MNG+ I GR V V E R R+
Sbjct: 82 GMNGQDIGGRNVIVQEAQPRSRR 104
>gi|114691962|ref|XP_001136007.1| PREDICTED: similar to RBMY1A1 protein isoform 2 [Pan troglodytes
verus]
Length = 390
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 51/80 (63%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE +++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKTLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V +
Sbjct: 64 AAKDMNGKSLDGKAIKVEQA 83
>gi|296121725|ref|YP_003629503.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM 3776]
gi|296014065|gb|ADG67304.1| RNP-1 like RNA-binding protein [Planctomyces limnophilus DSM 3776]
Length = 104
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+ +YVG L Y N + ++F +G V + ++V DR T R K +GFV FG+ +SA DAIN
Sbjct: 3 TKLYVGNLTYDVNNSGLEQLFSSFGEVRSAQVVMDRETGRSKGFGFVEFGDSQSASDAIN 62
Query: 99 DMNGRTIDGRVVRVSEVATR 118
MNG+ ++GR + V+E R
Sbjct: 63 AMNGKDVNGRALTVNEARPR 82
>gi|209976406|gb|ACJ04160.1| putative glycine-rich RNA-binding protein [Chorispora bungeana]
Length = 175
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL ++ ++ ++ F +YG VV KI+NDR T R + +GFVTF + +S
Sbjct: 3 SADVEFRCFVGGLAWATDDRALETAFSQYGDVVDSKIINDRETGRSRGFGFVTFKDEKSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+ +DGR + V+E
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
>gi|15982739|gb|AAL09710.1| AT3g26420/F20C19_14 [Arabidopsis thaliana]
gi|19699180|gb|AAL90956.1| AT3g26420/F20C19_14 [Arabidopsis thaliana]
Length = 148
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 64/120 (53%), Gaps = 15/120 (12%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ D E ++GGL ++ ++ +R F+KYG +V K+V D+ S R + +GF+TF ++
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDR 152
+AI MNG +DGR + V D+ + GRD D +R RDR DR
Sbjct: 61 MDEAIAAMNGMDLDGRTITV--------------DKAQPHQGGAGRDNDGDRGRDRGYDR 106
>gi|388567211|ref|ZP_10153648.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
gi|388265594|gb|EIK91147.1| putative RNA-binding protein rbpB [Hydrogenophaga sp. PBC]
Length = 97
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
S +YVG LPYS N+DS+R F ++G+V + K++ DR S R K +GFV + A AIN
Sbjct: 3 SKLYVGNLPYSVNDDSLRHNFSEFGNVASAKVMTDRDSGRSKGFGFVEMASEAEAQAAIN 62
Query: 99 DMNGRTIDGR--VVRVS 113
+NG+++DGR VV VS
Sbjct: 63 GLNGQSVDGRQIVVNVS 79
>gi|327279530|ref|XP_003224509.1| PREDICTED: cold-inducible RNA-binding protein-like [Anolis
carolinensis]
Length = 148
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE +++GGL + NE ++ ++F YG + V +V DR T R + +GF+T+ P A DA
Sbjct: 4 DEGKLFIGGLSFDTNEQNLEQLFSPYGDIAEVVVVKDRETQRSRGFGFITYCRPEDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEV 115
+ MNG ++DGR +RV +
Sbjct: 64 MRAMNGESVDGRQIRVDQA 82
>gi|297741463|emb|CBI32594.3| unnamed protein product [Vitis vinifera]
Length = 121
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ ++ S+ + F ++G ++ KI+NDR T R + +GFVTF + +S DAI MN
Sbjct: 11 FVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMN 70
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 71 GQNLDGRNITVNEA 84
>gi|359475330|ref|XP_003631658.1| PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Vitis
vinifera]
Length = 162
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ ++ S+ + F ++G ++ KI+NDR T R + +GFVTF + +S DAI MN
Sbjct: 11 FVGGLAWATDDQSLERAFSQFGEILESKIINDRETGRSRGFGFVTFSSEQSMRDAIEGMN 70
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 71 GQNLDGRNITVNEA 84
>gi|350538645|ref|NP_001233728.1| RNA-binding motif 3 [Cricetulus griseus]
gi|189170130|gb|ACD80090.1| RNA-binding motif 3 [Cricetulus griseus]
Length = 156
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R S G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGSRGG 92
>gi|260796311|ref|XP_002593148.1| hypothetical protein BRAFLDRAFT_209787 [Branchiostoma floridae]
gi|260796325|ref|XP_002593155.1| hypothetical protein BRAFLDRAFT_143355 [Branchiostoma floridae]
gi|229278372|gb|EEN49159.1| hypothetical protein BRAFLDRAFT_209787 [Branchiostoma floridae]
gi|229278379|gb|EEN49166.1| hypothetical protein BRAFLDRAFT_143355 [Branchiostoma floridae]
Length = 88
Score = 69.7 bits (169), Expect = 2e-09, Method: Composition-based stats.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D ++V GL NE ++ K+F+KYG +V V ++ D+ T R + +GF+TF NPR A
Sbjct: 5 DTPGKIFVAGLNLETNETTLEKLFNKYGKIVEVLLMKDKITARSRGFGFITFENPRDAEV 64
Query: 96 AINDMNGRTIDGRVVRV 112
A+ +MNG+ I G+V++V
Sbjct: 65 AVKEMNGQDIAGKVIKV 81
>gi|328772157|gb|EGF82196.1| hypothetical protein BATDEDRAFT_34645 [Batrachochytrium
dendrobatidis JAM81]
Length = 153
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLPY E V VF ++G VV + +V D+ T + K + F+ + + RS V A
Sbjct: 47 DSAYIYIGGLPYHLTEGDVICVFSQFGEVVDLDMVRDKETGKSKGFAFLAYEDQRSTVLA 106
Query: 97 INDMNGRTIDGRVVRVSEVA-TRGRKSNSGRDQ 128
++++NG I GRV+RV A RG + + G D+
Sbjct: 107 VDNLNGIQISGRVIRVDHTAKYRGPRRDDGFDE 139
>gi|383847795|ref|XP_003699538.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Megachile
rotundata]
Length = 139
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGLPY E V +F +YG VV + ++ D+ T + K YGF+ + + RS + A
Sbjct: 32 DSAWIFIGGLPYDLTEGDVVTIFSQYGEVVNINLIRDKDTGKQKGYGFLCYEDQRSTILA 91
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+++ NG I GR +RV VA
Sbjct: 92 VDNFNGTKILGRTIRVDHVA 111
>gi|410060051|ref|XP_003949287.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
A1-like [Pan troglodytes]
Length = 184
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +A
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64
Query: 97 INDMNGRTIDGRVVRVSEV 115
DMNG+++DG+ ++V +
Sbjct: 65 AKDMNGKSLDGKAIKVEQA 83
>gi|6273331|gb|AAF06329.1|AF191305_1 glycine-rich RNA binding protein, partial [Medicago sativa]
Length = 105
Score = 69.3 bits (168), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/79 (44%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + D++ K F +YG +V KI+NDR T R + +GFVTF N +S D
Sbjct: 3 DVEDRCFVGGLAWATDNDALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMND 62
Query: 96 AINDMNGRTIDGRVVRVSE 114
I MNG+ +DGR + V++
Sbjct: 63 VIEAMNGQDLDGRNITVNQ 81
>gi|148702008|gb|EDL33955.1| mCG116386, isoform CRA_e [Mus musculus]
Length = 179
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 23 VIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKC 81
+ FN + M+ +E ++VGGL ++ +E ++ F +G + V +V DR T R +
Sbjct: 15 LTFNFQDLPSAMS-SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRG 73
Query: 82 YGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112
+GF+TF NP A DA+ MNG ++DGR +RV
Sbjct: 74 FGFITFTNPEHASDAMRAMNGESLDGRQIRV 104
>gi|238505292|ref|XP_002383875.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|317151540|ref|XP_001824733.2| nucleolin protein Nsr1 [Aspergillus oryzae RIB40]
gi|220689989|gb|EED46339.1| nucleolin protein Nsr1, putative [Aspergillus flavus NRRL3357]
gi|391872083|gb|EIT81226.1| nuclear localization sequence binding protein [Aspergillus oryzae
3.042]
Length = 525
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSAVDAIND 99
+++VG +P+SANEDS+ +VF + GS++ +++ D S R K +G+V F + A +A N+
Sbjct: 389 TLFVGNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEAREAFNE 448
Query: 100 MNGRTIDGRVVRV 112
+NG IDGR VR+
Sbjct: 449 LNGAEIDGRPVRL 461
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
++++VG L ++ +E ++ F+++G + V+I+ +R T R + +G+V + N A A
Sbjct: 280 ANLFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFE 339
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDR 140
IDGR + + + AT GR +N R+Q R + R R
Sbjct: 340 AKRDTEIDGRKINL-DYAT-GRPAN--REQGGFQDRAQARAR 377
>gi|83773473|dbj|BAE63600.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 440
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 51/73 (69%), Gaps = 1/73 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSAVDAIND 99
+++VG +P+SANEDS+ +VF + GS++ +++ D S R K +G+V F + A +A N+
Sbjct: 304 TLFVGNIPFSANEDSLHEVFGQKGSILGIRLPTDPESGRPKGFGYVQFSSVEEAREAFNE 363
Query: 100 MNGRTIDGRVVRV 112
+NG IDGR VR+
Sbjct: 364 LNGAEIDGRPVRL 376
Score = 41.2 bits (95), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
++++VG L ++ +E ++ F+++G + V+I+ +R T R + +G+V + N A A
Sbjct: 195 ANLFVGNLSWNVDEAWLQSEFEEFGELSGVRIMTERDTGRSRGFGYVEYTNAVDAAKAFE 254
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDR 140
IDGR + + + AT GR +N R+Q R + R R
Sbjct: 255 AKRDTEIDGRKINL-DYAT-GRPAN--REQGGFQDRAQARAR 292
>gi|7024451|dbj|BAA92156.1| glycine-rich RNA-binding protein [Citrus unshiu]
Length = 167
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL ++ + S+ + F YG ++ KI+NDR T R + +GFVTF + +S
Sbjct: 3 SADVEFRCFVGGLAWATTDSSLHEAFSAYGDILESKIINDRETGRSRGFGFVTFRDEKSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+ +DGR + V+E
Sbjct: 63 RDAIEGMNGQNLDGRNITVNEA 84
>gi|452824419|gb|EME31422.1| glycine-rich RNA binding protein isoform 1 [Galdieria sulphuraria]
Length = 148
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ +++ V+VGGLP+S +E+ +++VF KYG VV ++V DR T R + +GF+++ S
Sbjct: 1 MSEDNRVFVGGLPWSISEEDLKQVFSKYGEVVDARVVIDRETGRSRGFGFISYAESSSVD 60
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
+ I ++G+ + GR +RV++ TR
Sbjct: 61 ECIAALDGQDLQGRTIRVNKAMTR 84
>gi|356508388|ref|XP_003522939.1| PREDICTED: uncharacterized protein LOC100806292 [Glycine max]
Length = 185
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + D++ K F YG +V K++ DR T R + +GFVTF + ++ DAI MN
Sbjct: 11 FVGGLAWATDSDALEKAFSHYGEIVESKVIIDRETGRSRGFGFVTFASEQAMKDAIEGMN 70
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 71 GQNLDGRSITVNEA 84
>gi|2624326|emb|CAA05728.1| OsGRP1 [Oryza sativa Japonica Group]
Length = 160
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F +G ++ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 65 AIEGMNGKELDGRNITVNEAQSR 87
>gi|390480268|ref|XP_002763353.2| PREDICTED: RNA-binding motif protein, X chromosome-like [Callithrix
jacchus]
Length = 156
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
A DMNG+++DG+ ++V E AT+
Sbjct: 65 AARDMNGKSLDGKAIKV-EQATK 86
>gi|2293480|gb|AAB65412.1| glycine-rich protein [Oryza sativa Indica Group]
Length = 161
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG ++ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|338729124|ref|XP_003365829.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Equus
caballus]
Length = 135
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|332870664|ref|XP_003319035.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 3 [Pan troglodytes]
Length = 460
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V +
Sbjct: 64 AAKDMNGKSLDGKAIKVEQA 83
>gi|301619753|ref|XP_002939264.1| PREDICTED: hypothetical protein LOC100497806 [Xenopus (Silurana)
tropicalis]
Length = 280
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGLPY +E + VF +YG VV + +V D+S+ R + + F+ F + RS V A
Sbjct: 45 DSAWLFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKSSGRSRGFCFLCFEDQRSTVLA 104
Query: 97 INDMNGRTIDGRVVRVSEVAT-RGRKSNSGRDQFRHGHRHKG 137
++++NG + GR +RV VA R K D+ R KG
Sbjct: 105 VDNLNGIKVKGRTIRVDHVANYRPPKDAEDIDEITQSLREKG 146
>gi|114691683|ref|XP_001135255.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J-like isoform 4 [Pan troglodytes]
gi|332870660|ref|XP_003319033.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 1 [Pan troglodytes]
Length = 497
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V +
Sbjct: 64 AAKDMNGKSLDGKAIKVEQA 83
>gi|332870649|ref|XP_003319029.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J-like isoform 1 [Pan troglodytes]
Length = 506
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V +
Sbjct: 64 AAKDMNGKSLDGKAIKVEQA 83
>gi|332870651|ref|XP_003319030.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J-like isoform 2 [Pan troglodytes]
Length = 460
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V +
Sbjct: 64 AAKDMNGKSLDGKAIKVEQA 83
>gi|224105391|ref|XP_002313795.1| predicted protein [Populus trichocarpa]
gi|222850203|gb|EEE87750.1| predicted protein [Populus trichocarpa]
Length = 128
Score = 68.9 bits (167), Expect = 4e-09, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ + +++ F +YG ++ KI+NDR T R + +GFVTFGN ++ DAI
Sbjct: 5 EYRCFVGGLAWATTDQVLQEAFSQYGEIIDSKIINDRETGRSRGFGFVTFGNEKAMRDAI 64
Query: 98 NDMNGRTIDGRVVRVSEVAT 117
+ MNG+ +DGR + V+E +
Sbjct: 65 DGMNGQDLDGRNITVNEAQS 84
>gi|297802026|ref|XP_002868897.1| hypothetical protein ARALYDRAFT_490700 [Arabidopsis lyrata subsp.
lyrata]
gi|297314733|gb|EFH45156.1| hypothetical protein ARALYDRAFT_490700 [Arabidopsis lyrata subsp.
lyrata]
Length = 164
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ + + + F ++G V+ KI+NDR T R + +GFVTF + ++ DAI
Sbjct: 5 EYRCFVGGLAWATQDHDLERTFSQFGDVLDSKIINDRETGRSRGFGFVTFKDEKAMRDAI 64
Query: 98 NDMNGRTIDGRVVRVSEV 115
+MNG+ +DGR + V+E
Sbjct: 65 EEMNGKELDGRTITVNEA 82
>gi|211906474|gb|ACJ11730.1| glycine-rich RNA-binding protein [Gossypium hirsutum]
Length = 168
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 54/83 (65%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ + F +G +V KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEFRCFVGGLAWATDDRALEEAFSAFGEIVESKIINDRETGRSRGFGFVTFRDEKAMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 65 AIEGMNGQNLDGRNITVNEAQSR 87
>gi|115489714|ref|NP_001067344.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|77557139|gb|ABA99935.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed [Oryza
sativa Japonica Group]
gi|113649851|dbj|BAF30363.1| Os12g0632000 [Oryza sativa Japonica Group]
gi|125580173|gb|EAZ21319.1| hypothetical protein OsJ_36973 [Oryza sativa Japonica Group]
gi|215769456|dbj|BAH01685.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 162
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F +G ++ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 65 AIEGMNGKELDGRNITVNEAQSR 87
>gi|115488680|ref|NP_001066827.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|77555842|gb|ABA98638.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113649334|dbj|BAF29846.1| Os12g0502200 [Oryza sativa Japonica Group]
gi|125579440|gb|EAZ20586.1| hypothetical protein OsJ_36195 [Oryza sativa Japonica Group]
gi|215694288|dbj|BAG89281.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215708787|dbj|BAG94056.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 258
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S ++VGGL Y +E S+R F YG V+ KI+NDR T R + +GF+T+ + A AI
Sbjct: 31 SKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAIT 90
Query: 99 DMNGRTIDGRVVRVSEVATR 118
++G+ +DGR +RV+ R
Sbjct: 91 ALDGKDLDGRNIRVNTANER 110
>gi|351725105|ref|NP_001235801.1| uncharacterized protein LOC100305467 [Glycine max]
gi|255625591|gb|ACU13140.1| unknown [Glycine max]
Length = 156
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL ++ + + K F +YG VV KI+NDR T R + +GFVTF + S
Sbjct: 3 SADVEYRCFVGGLAWATDNYDLEKAFSQYGDVVESKIINDRETGRSRGFGFVTFASEDSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+ +DGR + V+E
Sbjct: 63 RDAIEGMNGQNLDGRNITVNEA 84
>gi|1346180|sp|P49310.1|GRP1_SINAL RecName: Full=Glycine-rich RNA-binding protein GRP1A
gi|496233|gb|AAA59212.1| homology with RNA-binding proteins in meristematic tissue [Sinapis
alba]
Length = 166
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ F +YG V+ KI+NDR T R + +GFVTF + +S D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
>gi|149744489|ref|XP_001493789.1| PREDICTED: putative RNA-binding protein 3-like isoform 1 [Equus
caballus]
Length = 156
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|18103931|emb|CAC83314.1| glycine rich RNA binding protein [Oryza sativa Indica Group]
Length = 194
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG ++ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 65 AIEGMNGKELDGRNITVNEAQSR 87
>gi|2331133|gb|AAB66885.1| glycine-rich protein [Oryza sativa Japonica Group]
Length = 161
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + S+ F YG ++ KI+NDR T R + +GFVTF + ++ DAI MN
Sbjct: 11 FVGGLAWATDNRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMN 70
Query: 102 GRTIDGRVVRVSEVATR 118
G+ +DGR + V+E +R
Sbjct: 71 GKELDGRNITVNEAQSR 87
>gi|410988519|ref|XP_004000531.1| PREDICTED: putative RNA-binding protein 3 [Felis catus]
Length = 160
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGARGG 92
>gi|332870653|ref|XP_003319031.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 1 [Pan troglodytes]
Length = 497
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V +
Sbjct: 64 AAKDMNGKSLDGKAIKVEQA 83
>gi|332870655|ref|XP_003319032.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J isoform 2 [Pan troglodytes]
Length = 460
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V +
Sbjct: 64 AAKDMNGKSLDGKAIKVEQA 83
>gi|212722916|ref|NP_001132731.1| uncharacterized protein LOC100194217 [Zea mays]
gi|194695242|gb|ACF81705.1| unknown [Zea mays]
gi|413933459|gb|AFW68010.1| responsive to abscisic acid15 [Zea mays]
Length = 96
Score = 68.9 bits (167), Expect = 4e-09, Method: Composition-based stats.
Identities = 35/92 (38%), Positives = 56/92 (60%), Gaps = 1/92 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + +S+ F YG ++ K++ DR T R + +GFVTF + S +D
Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGRD 127
AI +MNG+ +DGR + V++ +RG RD
Sbjct: 65 AIENMNGKELDGRNITVNQAQSRGGGGGGWRD 96
>gi|332870647|ref|XP_003319028.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J-like isoform 2 [Pan troglodytes]
Length = 460
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V +
Sbjct: 64 AAKDMNGKSLDGKAIKVEQA 83
>gi|168034678|ref|XP_001769839.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678948|gb|EDQ65401.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 133
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 65/115 (56%), Gaps = 11/115 (9%)
Query: 12 STSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKI 71
S ++ VP L+ +R+ S +++GGL ++ +E+++R F +G+V VKI
Sbjct: 27 SATVAVPAM------LVAQRMM----SSSKLFIGGLAWATDENTLRDAFSSFGTVTEVKI 76
Query: 72 VNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ DR T R + +GFV F +P A A+ +M+GR + GR +RV + R++ G
Sbjct: 77 ILDRDTGRSRGFGFVNFTSPEEAEVALQEMDGRELAGRQIRVDYATDKARETRGG 131
>gi|1934994|emb|CAA73034.1| SGRP-1 [Solanum commersonii]
Length = 162
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M + E S +VGGL ++ + ++ F YG VV KI+NDR T R + +GFVTF + +S
Sbjct: 1 MAAEVEYSCFVGGLAWATTDRTLSDAFSTYGEVVDSKIINDRETGRSRGFGFVTFKDEKS 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
+AI+ MNG +DGR + V+E
Sbjct: 61 MKEAISGMNGSELDGRNITVNEA 83
>gi|108710322|gb|ABF98117.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
Length = 153
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG ++ KI+NDR T R + +GFVTF + +S D
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|50881454|gb|AAT85299.1| glycine-rich RNA-binding protein, putative [Oryza sativa Japonica
Group]
gi|108710320|gb|ABF98115.1| retrotransposon protein, putative, Ty1-copia subclass, expressed
[Oryza sativa Japonica Group]
gi|154550663|gb|ABS83497.1| receptor-like serine threonine kinase [Oryza sativa Japonica Group]
gi|169244423|gb|ACA50485.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
gi|215697732|dbj|BAG91726.1| unnamed protein product [Oryza sativa Japonica Group]
gi|306415943|gb|ADM86846.1| glycine-rich RNA binding protein [Oryza sativa Japonica Group]
Length = 162
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG ++ KI+NDR T R + +GFVTF + +S D
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSRGFGFVTFSSEQSMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|390432205|gb|AFL91694.1| glycine-rich RNA binding protein [Raphanus sativus var.
raphanistroides]
Length = 153
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL ++ ++ ++ F +YG V+ KI+NDR T R + +GFVTF + +S
Sbjct: 3 SADVEYRCFVGGLAWATDDRALETAFSQYGDVLDSKIINDRETGRSRGFGFVTFKDEKSM 62
Query: 94 VDAINDMNGRTIDGRVVRVSEV 115
DAI MNG+ +DGR + V+E
Sbjct: 63 RDAIEAMNGQDLDGRSITVNEA 84
>gi|166796147|gb|AAI59019.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
gi|166796532|gb|AAI59007.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
Length = 269
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGLPY +E + VF +YG VV + +V D+S+ R + + F+ F + RS V A
Sbjct: 34 DSAWLFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKSSGRSRGFCFLCFEDQRSTVLA 93
Query: 97 INDMNGRTIDGRVVRVSEVAT-RGRKSNSGRDQFRHGHRHKG 137
++++NG + GR +RV VA R K D+ R KG
Sbjct: 94 VDNLNGIKVKGRTIRVDHVANYRPPKDAEDIDEITQSLREKG 135
>gi|444518692|gb|ELV12325.1| Putative RNA-binding protein 3 [Tupaia chinensis]
Length = 154
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|189339246|ref|NP_446148.1| putative RNA-binding protein 3 [Rattus norvegicus]
gi|149028410|gb|EDL83795.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
gi|149028411|gb|EDL83796.1| RNA binding motif protein 3, isoform CRA_a [Rattus norvegicus]
Length = 156
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|62858501|ref|NP_001016941.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
gi|89268233|emb|CAJ83312.1| RNA binding motif protein, X-linked 2 [Xenopus (Silurana)
tropicalis]
Length = 269
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGLPY +E + VF +YG VV + +V D+S+ R + + F+ F + RS V A
Sbjct: 34 DSAWLFIGGLPYELSEGDIICVFSQYGEVVNINLVRDKSSGRSRGFCFLCFEDQRSTVLA 93
Query: 97 INDMNGRTIDGRVVRVSEVAT-RGRKSNSGRDQFRHGHRHKG 137
++++NG + GR +RV VA R K D+ R KG
Sbjct: 94 VDNLNGIKVKGRTIRVDHVANYRPPKDAEDIDEITQSLREKG 135
>gi|326491331|dbj|BAK05765.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 262
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 11/133 (8%)
Query: 9 QGVSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA 68
Q V T +P+ +F L M +DE +VG L +S ++S++ F KYG V
Sbjct: 16 QQVLTFSHLPMFCVCLFIL----PVMADEDEYRCFVGNLSWSTTDESLKDAFSKYGKVTE 71
Query: 69 VKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRD 127
K+V D+ S R + + FVTF ++ +AI DMNG ++GR + V + +G GRD
Sbjct: 72 AKVVMDKFSGRSRGFAFVTFDEKKAMEEAIEDMNGLDLEGRAITVDKAQPQG----VGRD 127
Query: 128 QFRHGHRHKGRDR 140
R+G R RDR
Sbjct: 128 --RNGDRDFDRDR 138
>gi|332870645|ref|XP_003319027.1| PREDICTED: RNA-binding motif protein, Y chromosome, family 1 member
F/J-like isoform 1 [Pan troglodytes]
Length = 497
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V +
Sbjct: 64 AAKDMNGKSLDGKAIKVEQA 83
>gi|221129809|ref|XP_002164481.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Hydra
magnipapillata]
Length = 255
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGLPY E V VF +YG +V + +V D+ T + K YGF+ + + RS + A
Sbjct: 35 DSAFIFIGGLPYDLTEGDVLAVFSQYGEIVNINLVRDKKTGKFKGYGFLCYEDQRSTILA 94
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+++ NG + GR +RV V
Sbjct: 95 VDNFNGIKLGGRTIRVDHVG 114
>gi|326515712|dbj|BAK07102.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 104
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S++ F KYG V+ KI+ DR T R + +GFVTF + +
Sbjct: 3 DVEYRCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQ 62
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 63 AIEAMNGQDLDGRNITVNEAQSR 85
>gi|311698159|gb|ADQ00374.1| glycine-rich RNA-binding protein [Sequoia sempervirens]
Length = 194
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ ++ S+ F +G V+ KIV+DR T R + +GFVTF + ++ +DAI MN
Sbjct: 11 FVGGLAWATDDRSLHDAFSPFGEVLESKIVSDRETGRSRGFGFVTFSDEQAMMDAIEAMN 70
Query: 102 GRTIDGRVVRVSEVATR 118
G+ +DGR + V++ +R
Sbjct: 71 GKELDGRNITVNQAQSR 87
>gi|348667221|gb|EGZ07047.1| hypothetical protein PHYSODRAFT_251824 [Phytophthora sojae]
Length = 419
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 67/112 (59%), Gaps = 7/112 (6%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E SV+VG +PY ED ++++F + GSVV ++V DR T + K YGF + + +A+ A+
Sbjct: 12 ERSVFVGNIPYDVTEDMLKEIFSEAGSVVNFRLVTDRETGKPKGYGFCEYADGATALSAM 71
Query: 98 NDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGH----RHKGRDRDNNRH 145
++NG I+GR +RV + A G KS G D+ RH + RH G N R+
Sbjct: 72 RNLNGYEINGRNLRV-DFADGGDKSG-GADRKRHDNGSHARHGGTSGSNFRN 121
>gi|341889641|gb|EGT45576.1| hypothetical protein CAEBREN_06918 [Caenorhabditis brenneri]
Length = 348
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG + Y ED++R +F K G V+++K+V+DR T + K YGF+ F + ++A AI
Sbjct: 18 SVFVGNISYDVTEDTIRAMFSKAGPVMSIKMVHDRETGKPKGYGFIEFPDIQTADTAIRV 77
Query: 100 MNGRTIDGRVVRVSEVA 116
+NG + GR++RV A
Sbjct: 78 LNGHELGGRILRVDSAA 94
>gi|301764797|ref|XP_002917810.1| PREDICTED: putative RNA-binding protein 3-like isoform 1
[Ailuropoda melanoleuca]
Length = 156
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|167382576|ref|XP_001736171.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165901525|gb|EDR27604.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 697
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E +Y+ LP++ ED +RK FD++G++ + + D+ T + K +GFV F P+ AV A
Sbjct: 184 EEGRIYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKA 243
Query: 97 INDMNGRTIDGRVVRVS 113
N+M+ + I GR+V V+
Sbjct: 244 CNEMDNKFIKGRIVHVT 260
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAV---KIVNDRSTRGKCYGFVTFGNPRSAVDAI 97
++Y+ L + ED +RKVF+K G V+AV K + + + +GFV + A++AI
Sbjct: 517 TLYIKNLSFKTKEDVIRKVFEKCGRVLAVTLSKTKDKKVEKNSGFGFVEYARHEDAINAI 576
Query: 98 NDMNGRTIDGRVVRV 112
+ G+ IDG V++
Sbjct: 577 KTLQGKVIDGHAVQI 591
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
S + + LP A+E +++ F+K+G + K++ + +GF+ F N A AI
Sbjct: 2 SRIIIKNLPERADEKILKQQFEKFGGITDCKVMRTPQGVSRKFGFIGFENEDQAQTAITK 61
Query: 100 MNGRTIDGRVVRVSEVATRG 119
MNG I ++VS G
Sbjct: 62 MNGAYIQSSKLQVSLAKAIG 81
>gi|20257683|gb|AAM16007.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 25 FNLIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCY 82
F + ER KM D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +
Sbjct: 1 FWFVGEREKMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGF 60
Query: 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
GFVTF + AI MNG+ +DGR + V+E
Sbjct: 61 GFVTFSTEDAMRSAIEGMNGKELDGRNITVNEA 93
>gi|125536731|gb|EAY83219.1| hypothetical protein OsI_38428 [Oryza sativa Indica Group]
Length = 257
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S ++VGGL Y +E S+R F YG V+ KI+NDR T R + +GF+T+ + A AI
Sbjct: 31 SKLFVGGLSYGTDEQSLRDTFANYGQVIEAKIINDRETGRSRGFGFITYASSEEASAAIT 90
Query: 99 DMNGRTIDGRVVRVSEVATR 118
++G+ +DGR +RV+ R
Sbjct: 91 ALDGKDLDGRNIRVNTANER 110
>gi|351725383|ref|NP_001238370.1| uncharacterized protein LOC100527079 [Glycine max]
gi|255631508|gb|ACU16121.1| unknown [Glycine max]
Length = 130
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
++VGGL + E+++ + F YG V+ KIV DR S R K +GFVTF + A +AI DM
Sbjct: 31 LFVGGLSFYTTENALSEAFSNYGQVIEAKIVTDRVSDRSKGFGFVTFASQDEAENAIEDM 90
Query: 101 NGRTIDGRVVRV----SEVATRG 119
G+T++GRV+ V + TRG
Sbjct: 91 KGKTLNGRVIFVDYAKPNINTRG 113
>gi|13785947|gb|AAK39523.1| RNA-binding motif protein 3 [Rattus norvegicus]
Length = 127
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|195626882|gb|ACG35271.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 203
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 15 IVVPIKARVIFNLIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVN 73
+++P + F + ER +M D E +VGGL ++ ++ S+ F YG V+ KI+
Sbjct: 39 LLLPHRFVFRFWFVGEREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIIL 98
Query: 74 DRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
DR T R + +GFVTF + AI MNG+ +DGR + V+E
Sbjct: 99 DRETQRSRGFGFVTFSTEDAMRSAIEGMNGKELDGRNITVNEA 141
>gi|10799202|gb|AAG23220.1| glycine-rich RNA-binding protein [Sorghum bicolor]
Length = 170
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ N +++ F +G V+ K++ DR T R + +GFVTF + +S +D
Sbjct: 5 DVEYRCFVGGLAWATNNETLEHAFANFGQVLDSKVITDRETGRSRGFGFVTFSSEQSMLD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI +MNG+ +DGR + V++
Sbjct: 65 AIENMNGKELDGRNITVNQA 84
>gi|344250008|gb|EGW06112.1| Putative RNA-binding protein 3 [Cricetulus griseus]
Length = 169
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A D
Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62
Query: 96 AINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
A+ MNG ++DGR +RV R S G
Sbjct: 63 AMRAMNGESLDGRQIRVDHAGKSARGSRGG 92
>gi|330801309|ref|XP_003288671.1| hypothetical protein DICPUDRAFT_152921 [Dictyostelium purpureum]
gi|325081293|gb|EGC34814.1| hypothetical protein DICPUDRAFT_152921 [Dictyostelium purpureum]
Length = 348
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 55/73 (75%), Gaps = 1/73 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAINDM 100
+++ LP++ ++ ++++F YG+VV+ K+ D++T+ KC+GFV++ N +SA+ AI ++
Sbjct: 269 LFIYYLPFTYGDEELKQLFSPYGNVVSSKVFIDKNTQQSKCFGFVSYDNTQSAIQAIQEL 328
Query: 101 NGRTIDGRVVRVS 113
NGR I+G+ ++V+
Sbjct: 329 NGRAIEGKKLKVN 341
>gi|109077776|ref|XP_001110036.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Macaca mulatta]
Length = 322
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L EE VK+ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEEEVKLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG + GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKVKGRTIRVDHVS 113
>gi|297814870|ref|XP_002875318.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321156|gb|EFH51577.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 247
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ D E ++GGL +S ++ +R F+KYG +V K+V D+ S R + +GF+TF ++
Sbjct: 1 MSEDPEYRCFIGGLAWSTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRD 141
+AI MNG +DGR + V + + SGRD R +G DRD
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQP--HQGGSGRDHDGDRSRDRGYDRD 107
>gi|281353659|gb|EFB29243.1| hypothetical protein PANDA_006181 [Ailuropoda melanoleuca]
Length = 148
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|119608862|gb|EAW88456.1| RNA binding motif protein, X-linked, isoform CRA_b [Homo sapiens]
Length = 221
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
A DMNG+++DG+ ++V E AT+
Sbjct: 65 AARDMNGKSLDGKAIKV-EQATK 86
>gi|193671655|ref|XP_001946102.1| PREDICTED: cleavage stimulation factor subunit 2-like
[Acyrthosiphon pisum]
Length = 388
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F++ G V++ K+V DR T + K YGF + + +A+ A+ +
Sbjct: 13 SVFVGNIPYEATEEKLKDIFNEVGPVISFKLVYDRETGKPKGYGFCEYKDQETALSAMRN 72
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NG I GR +RV T
Sbjct: 73 LNGYEIGGRTLRVDNACT 90
>gi|407039238|gb|EKE39532.1| RNA recognition motif domain containing protein [Entamoeba nuttalli
P19]
Length = 697
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E +Y+ LP++ ED +RK FD++G++ + + D+ T + K +GFV F P+ AV A
Sbjct: 184 EEGRIYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKA 243
Query: 97 INDMNGRTIDGRVVRVS 113
N+M+ + I GR+V V+
Sbjct: 244 CNEMDNKFIKGRIVHVT 260
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAV---KIVNDRSTRGKCYGFVTFGNPRSAVDAI 97
++YV + + ED +RKVF+K G V+AV K + + + +GFV + A++AI
Sbjct: 517 TLYVKNISFKTKEDVIRKVFEKCGRVLAVTLSKTKDKKVEKNSGFGFVEYAKHEDAINAI 576
Query: 98 NDMNGRTIDGRVVRV 112
+ G+ IDG V++
Sbjct: 577 KTLQGKVIDGHAVQI 591
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
S + + LP A+E +++ F+K+G + K++ + +GF+ F N A AI
Sbjct: 2 SRIIIKNLPERADEKILKQQFEKFGGITDCKVMRTPQGNSRKFGFIGFENEDQAQTAITK 61
Query: 100 MNGRTIDGRVVRVSEVATRG 119
MNG I ++VS G
Sbjct: 62 MNGAYIQSSKLQVSLAKAIG 81
>gi|383760540|ref|YP_005439526.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
gi|381381210|dbj|BAL98027.1| RNP-1 like RNA-binding protein, Glycine-rich [Rubrivivax
gelatinosus IL144]
Length = 161
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG L YS +DS+++ F ++G+V + K++ DR T R K +GFV G+ A AIN M
Sbjct: 5 LYVGNLAYSVRDDSLQQAFAQFGTVTSAKVMMDRETGRSKGFGFVEMGSDAEAQAAINGM 64
Query: 101 NGRTIDGRVVRVSEVATR 118
NG+ ++GR + V+E R
Sbjct: 65 NGQPLEGRAIVVNEARPR 82
>gi|449707231|gb|EMD46930.1| RNA recognition domain containing protein [Entamoeba histolytica
KU27]
Length = 685
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E +Y+ LP++ ED +RK FD++G++ + + D+ T + K +GFV F P+ AV A
Sbjct: 185 EEGRIYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKA 244
Query: 97 INDMNGRTIDGRVVRVS 113
N+M+ + I GR+V V+
Sbjct: 245 CNEMDNKFIKGRIVHVT 261
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAV---KIVNDRSTRGKCYGFVTFGNPRSAVDAI 97
++YV + + ED +RKVF+K G V+A+ K + + + +GFV + A++AI
Sbjct: 505 TLYVKNISFKTKEDVIRKVFEKCGRVLAITLSKTKDKKVEKNSGFGFVEYAKHEDAINAI 564
Query: 98 NDMNGRTIDGRVVRV 112
+ G+ IDG V++
Sbjct: 565 KTLQGKVIDGHAVQI 579
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
S + + LP A+E +++ F+K+G + K++ + +GF+ F N A AI
Sbjct: 2 SRIIIKNLPERADEKILKQQFEKFGGITDCKVMRTPQGNSRKFGFIGFENEDQAQTAITK 61
Query: 100 MNGRTIDGRVVRVSEVATRG 119
MNG I ++VS G
Sbjct: 62 MNGAYIQSSKLQVSLAKAIG 81
>gi|112994|sp|P10979.1|GRPA_MAIZE RecName: Full=Glycine-rich RNA-binding, abscisic acid-inducible
protein
gi|22313|emb|CAA31077.1| ABA-inducible gene protein [Zea mays]
gi|195605904|gb|ACG24782.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195617536|gb|ACG30598.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195620254|gb|ACG31957.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195637320|gb|ACG38128.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|226091|prf||1410284A abscisic acid inducible gene
Length = 157
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + +S+ F YG ++ K++ DR T R + +GFVTF + S +D
Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI +MNG+ +DGR + V++
Sbjct: 65 AIENMNGKELDGRNITVNQA 84
>gi|413933457|gb|AFW68008.1| responsive to abscisic acid15 [Zea mays]
Length = 159
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + +S+ F YG ++ K++ DR T R + +GFVTF + S +D
Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI +MNG+ +DGR + V++
Sbjct: 65 AIENMNGKELDGRNITVNQA 84
>gi|226491203|ref|NP_001151562.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195647746|gb|ACG43341.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + +S+ F YG ++ K++ DR T R + +GFVTF + S +D
Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI +MNG+ +DGR + V++
Sbjct: 65 AIENMNGKELDGRNITVNQA 84
>gi|195645042|gb|ACG41989.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 142
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + +S+ F YG ++ K++ DR T R + +GFVTF + S +D
Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI +MNG+ +DGR + V++
Sbjct: 65 AIENMNGKELDGRNITVNQA 84
>gi|226502795|ref|NP_001143712.1| uncharacterized protein LOC100276452 [Zea mays]
gi|195625294|gb|ACG34477.1| hypothetical protein [Zea mays]
Length = 105
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 55/75 (73%)
Query: 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345
RE+L+ E+S ++++++ K Q + DLQK+++KLE+ L A+K+SS RQ +T LYK F+Q+
Sbjct: 2 REDLENEVSQIKDKISAKGQHIADLQKKAQKLEDELAAARKVSSERQLAVTDLYKHFLQL 61
Query: 346 NEYAERLKSCEREFQ 360
+Y +R+K+ E Q
Sbjct: 62 QDYNDRVKTAEHRLQ 76
>gi|194700358|gb|ACF84263.1| unknown [Zea mays]
gi|413933458|gb|AFW68009.1| responsive to abscisic acid15 [Zea mays]
Length = 140
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + +S+ F YG ++ K++ DR T R + +GFVTF + S +D
Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI +MNG+ +DGR + V++
Sbjct: 65 AIENMNGKELDGRNITVNQA 84
>gi|395854422|ref|XP_003799690.1| PREDICTED: putative RNA-binding protein 3 [Otolemur garnettii]
Length = 155
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSTFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDRAGKSARGTRGG 92
>gi|449460375|ref|XP_004147921.1| PREDICTED: zinc finger CCCH domain-containing protein 25-like
[Cucumis sativus]
Length = 395
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + V+VGG+PY E + VF +YG +V V ++ D+ T + K Y FV + + RS A
Sbjct: 34 DSAYVFVGGIPYDLTEGDLLAVFAQYGEIVDVNLIRDKGTGKSKGYAFVAYEDQRSTNLA 93
Query: 97 INDMNGRTIDGRVVRVSEVA 116
++++NG I GR+VRV V+
Sbjct: 94 VDNLNGAQILGRIVRVDHVS 113
>gi|355750033|gb|EHH54371.1| hypothetical protein EGM_15194 [Macaca fascicularis]
Length = 310
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L EE VK+ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEEEVKLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG + GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKVKGRTIRVDHVS 113
>gi|67479353|ref|XP_655058.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56472162|gb|EAL49670.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
Length = 685
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E +Y+ LP++ ED +RK FD++G++ + + D+ T + K +GFV F P+ AV A
Sbjct: 185 EEGRIYITNLPFNCTEDDIRKEFDRFGNIAEIHLPIDKITKKSKGFGFVLFVVPQDAVKA 244
Query: 97 INDMNGRTIDGRVVRVS 113
N+M+ + I GR+V V+
Sbjct: 245 CNEMDNKFIKGRIVHVT 261
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAV---KIVNDRSTRGKCYGFVTFGNPRSAVDAI 97
++YV + + ED +RKVF+K G V+A+ K + + + +GFV + A++AI
Sbjct: 505 TLYVKNISFKTKEDVIRKVFEKCGRVLAITLSKTKDKKVEKNSGFGFVEYAKHEDAINAI 564
Query: 98 NDMNGRTIDGRVVRV 112
+ G+ IDG V++
Sbjct: 565 KTLQGKVIDGHAVQI 579
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
S + + LP A+E +++ F+K+G + K++ + +GF+ F N A AI
Sbjct: 2 SRIIIKNLPERADEKILKQQFEKFGGITDCKVMRTPQGNSRKFGFIGFENEDQAQTAITK 61
Query: 100 MNGRTIDGRVVRVSEVATRG 119
MNG I ++VS G
Sbjct: 62 MNGAYIQSSKLQVSLAKAIG 81
>gi|357115606|ref|XP_003559579.1| PREDICTED: glycine-rich RNA-binding protein 2-like [Brachypodium
distachyon]
Length = 160
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 1/105 (0%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M +ES ++VGGL + E +V F ++G +V V+++ +R T R + +GFV F +PR+
Sbjct: 1 MAGKEESQIFVGGLSWCTTERTVEGAFRRFGKIVHVQVITERHTGRSRGFGFVIFSDPRA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKG 137
A+DAI M+ + +DG + V + ++ GRD + R G
Sbjct: 61 AIDAIMWMHNQELDGHTITVFWANPKVDNADGGRDGYCGSGRAAG 105
>gi|30681492|ref|NP_850017.1| glycine-rich RNA-binding protein 7 [Arabidopsis thaliana]
gi|330252116|gb|AEC07210.1| glycine-rich RNA-binding protein 7 [Arabidopsis thaliana]
Length = 159
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ F +YG V+ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
>gi|21553354|gb|AAM62447.1| glycine-rich RNA binding protein 7 [Arabidopsis thaliana]
Length = 175
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ F +YG V+ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
>gi|227204227|dbj|BAH56965.1| AT2G21660 [Arabidopsis thaliana]
Length = 153
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ F +YG V+ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
>gi|15226605|ref|NP_179760.1| glycine-rich RNA-binding protein 7 [Arabidopsis thaliana]
gi|544424|sp|Q03250.1|GRP7_ARATH RecName: Full=Glycine-rich RNA-binding protein 7
gi|16226372|gb|AAL16149.1|AF428381_1 At2g22292/F2G1.7_ [Arabidopsis thaliana]
gi|16301|emb|CAA78711.1| glycine rich protein [Arabidopsis thaliana]
gi|166837|gb|AAA32853.1| RNA-binding protein [Arabidopsis thaliana]
gi|4567224|gb|AAD23639.1| glycine-rich RNA binding protein 7 [Arabidopsis thaliana]
gi|15810032|gb|AAL06943.1| At2g21660/F2G1.7 [Arabidopsis thaliana]
gi|330252115|gb|AEC07209.1| glycine-rich RNA-binding protein 7 [Arabidopsis thaliana]
Length = 176
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ F +YG V+ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
>gi|357123042|ref|XP_003563222.1| PREDICTED: zinc finger CCCH domain-containing protein 25-like
[Brachypodium distachyon]
Length = 385
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 61/109 (55%), Gaps = 9/109 (8%)
Query: 16 VVPIKARVIFNLIEERVKMTID--------DESSVYVGGLPYSANEDSVRKVFDKYGSVV 67
+ +K + N E + ++ D D + V+VGG+PY E + VF +YG VV
Sbjct: 4 LTQVKRTQVINQKEAALGLSEDASWHAKFKDSAYVFVGGVPYDLTEGDLLAVFAQYGEVV 63
Query: 68 AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
V +V D++T + K + FV + + RS V A++++NG + GR++RV V
Sbjct: 64 DVNLVRDKATGKSKGFAFVAYEDQRSTVLAVDNLNGAKVLGRIIRVDHV 112
>gi|147906061|ref|NP_001079913.1| RNA binding motif protein, X-linked 2 [Xenopus laevis]
gi|34783857|gb|AAH56844.1| MGC64376 protein [Xenopus laevis]
Length = 272
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGLP+ E V VF +YG VV + + D+S+ R + + FV F + RS V A
Sbjct: 34 DSAWIFIGGLPFELTEGDVICVFSQYGEVVNINLARDKSSGRSRGFCFVCFEDQRSTVLA 93
Query: 97 INDMNGRTIDGRVVRVSEVAT-RGRKSNSGRDQFRHGHRHKG 137
++++NG + GR +RV VA R K D+ R KG
Sbjct: 94 VDNLNGIKLKGRTIRVDHVANYRPPKDAEDIDEITQTLREKG 135
>gi|417396333|gb|JAA45200.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15 [Desmodus rotundus]
Length = 158
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV R +
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|442555271|ref|YP_007365096.1| RNA recognition domain-containing protein [Lawsonia intracellularis
N343]
gi|441492718|gb|AGC49412.1| RNA recognition domain-containing protein [Lawsonia intracellularis
N343]
Length = 88
Score = 67.8 bits (164), Expect = 9e-09, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
S+YVG LP+SA E+ V+ +F +YG V+AVK+V+DR T R + +GFV P A AI
Sbjct: 4 SIYVGNLPWSATEEQVQSLFSEYGHVMAVKLVSDRETGRARGFGFVEMEEP-GATAAIEA 62
Query: 100 MNGRTIDGRVVRVSEVATRGRKS 122
++ GR +RV+E R ++
Sbjct: 63 LDNANFGGRTLRVNEAKPRAPRA 85
>gi|345306629|ref|XP_001510789.2| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Ornithorhynchus anatinus]
Length = 420
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 32 VKMT-IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGN 89
VKM D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +
Sbjct: 25 VKMVEADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFES 84
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATR 118
P A DA DMNG+++DG+ ++V E AT+
Sbjct: 85 PADAKDAARDMNGKSLDGKAIKV-EQATK 112
>gi|452821825|gb|EME28851.1| glycine-rich RNA binding protein isoform 1 [Galdieria sulphuraria]
Length = 149
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M +++ V+VGGLP+S ED +R+ F KYG VV ++V +R T R + +GFV++ S
Sbjct: 1 MAAVEDNRVFVGGLPWSVGEDDLRETFSKYGEVVDARVVVERETGRSRGFGFVSYAEGSS 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATR 118
+ I ++G+ + GR +RV++ +R
Sbjct: 61 VEECIAALDGQDMQGRTIRVNKAMSR 86
>gi|75319742|sp|Q43472.1|GRP_HORVU RecName: Full=Glycine-rich RNA-binding protein blt801; AltName:
Full=Low temperature-responsive RNA-binding protein
gi|1229138|gb|AAB07749.1| low temperature-responsive RNA-binding protein [Hordeum vulgare
subsp. vulgare]
Length = 161
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S++ F KYG V+ KI+ DR T R + +GFVTF + +
Sbjct: 3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQ 62
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 63 AIEAMNGQDLDGRNITVNEAQSR 85
>gi|388494768|gb|AFK35450.1| unknown [Medicago truncatula]
Length = 176
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+++GG+ YS +E +R+ F +YG V+ KI+ DR T R + +GF+TF A A+ M
Sbjct: 42 LFIGGVSYSTDETGLREAFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAM 101
Query: 101 NGRTIDGRVVRVSEVATRGR 120
+ + +DGR VRV+ R R
Sbjct: 102 DNKELDGRTVRVNYATERAR 121
>gi|351706516|gb|EHB09435.1| Putative RNA-binding protein 3 [Heterocephalus glaber]
Length = 157
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRV 112
+ MNG ++DGR +RV
Sbjct: 64 MRAMNGESLDGRQIRV 79
>gi|261862339|ref|NP_001159882.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|261862342|ref|NP_001159883.1| putative RNA-binding protein 3 isoform 2 [Mus musculus]
gi|6093936|sp|O89086.1|RBM3_MOUSE RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3
gi|3395381|dbj|BAA32060.1| rbm3 [Mus musculus]
gi|12834559|dbj|BAB22957.1| unnamed protein product [Mus musculus]
gi|12840849|dbj|BAB24981.1| unnamed protein product [Mus musculus]
gi|13879226|gb|AAH06580.1| Rbm3 protein [Mus musculus]
gi|15983757|gb|AAL10707.1| RNA-binding motif protein 3 [Mus musculus]
gi|74180334|dbj|BAE32335.1| unnamed protein product [Mus musculus]
gi|74198712|dbj|BAE39828.1| unnamed protein product [Mus musculus]
gi|74228699|dbj|BAE21846.1| unnamed protein product [Mus musculus]
gi|76780243|gb|AAI06177.1| Rbm3 protein [Mus musculus]
gi|148702004|gb|EDL33951.1| mCG116386, isoform CRA_a [Mus musculus]
gi|148702009|gb|EDL33956.1| mCG116386, isoform CRA_a [Mus musculus]
Length = 153
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRV 112
+ MNG ++DGR +RV
Sbjct: 64 MRAMNGESLDGRQIRV 79
>gi|37497112|ref|NP_058089.2| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|261862337|ref|NP_001159881.1| putative RNA-binding protein 3 isoform 1 [Mus musculus]
gi|26340316|dbj|BAC33821.1| unnamed protein product [Mus musculus]
gi|26352956|dbj|BAC40108.1| unnamed protein product [Mus musculus]
gi|37589528|gb|AAH59098.1| Rbm3 protein [Mus musculus]
Length = 154
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRV 112
+ MNG ++DGR +RV
Sbjct: 64 MRAMNGESLDGRQIRV 79
>gi|355704773|gb|EHH30698.1| RNA-binding motif protein 3 [Macaca mulatta]
Length = 157
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV+ V R++
Sbjct: 64 MRAMNGESLDGRQIRVAHVGKSARET 89
>gi|344247055|gb|EGW03159.1| Heterogeneous nuclear ribonucleoprotein G [Cricetulus griseus]
Length = 384
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|351725255|ref|NP_001236574.1| uncharacterized protein LOC100527220 [Glycine max]
gi|255631812|gb|ACU16273.1| unknown [Glycine max]
Length = 138
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Query: 8 RQGVSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV 67
RQG + S P+ + + N I S +++GGL Y ++ S++ F +G VV
Sbjct: 12 RQGAARSTQAPVSS--MLNYIRCM------SSSKLFIGGLSYGVDDQSLKDAFSGFGDVV 63
Query: 68 AVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113
K++ DR S R + +GFV F N SA A++ M+G+ +DGR +RVS
Sbjct: 64 DAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKDLDGRSIRVS 110
>gi|156543304|ref|XP_001603981.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Nasonia
vitripennis]
Length = 139
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGLPY E V VF +YG +V + +V D+ T + K YGF+ + + RS + A
Sbjct: 32 DSAWIFIGGLPYDLTEGDVIAVFSQYGEIVNINLVRDKDTGKQKGYGFLCYEDQRSTILA 91
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++NG I GR +RV V
Sbjct: 92 VDNLNGIKILGRTIRVDHV 110
>gi|328865553|gb|EGG13939.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 949
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKI-VNDRSTRGKCYGFVTFGNPRSAVD 95
D+++ VYVG +P++A ED ++ +F G+VV+ + N + R YGF+ + NP+SA D
Sbjct: 739 DNDNRVYVGSVPWNATEDQIKTIFSSIGNVVSCSLKPNLETGRHMGYGFIDYDNPKSAED 798
Query: 96 AINDMNGRTIDGRVVRV 112
AI+ NG I+GR ++V
Sbjct: 799 AISTFNGYDINGRQLKV 815
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
+S +Y+G + ++ E + F +G + ++ + D +T R + + F+ + P +A++AI
Sbjct: 602 QSRIYIGNIHFNLTEADIVAAFSPFGPIKSLSLSKDPATGRSRGFCFIEYTYPEAAINAI 661
Query: 98 NDMNGRTIDGRVVRV 112
+MN +TI GR ++V
Sbjct: 662 QNMNQKTISGRQIKV 676
>gi|55778182|gb|AAH86491.1| Rbm3 protein [Mus musculus]
Length = 128
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRV 112
+ MNG ++DGR +RV
Sbjct: 64 MRAMNGESLDGRQIRV 79
>gi|126663185|ref|ZP_01734183.1| RNA binding protein [Flavobacteria bacterium BAL38]
gi|126624843|gb|EAZ95533.1| RNA binding protein [Flavobacteria bacterium BAL38]
Length = 111
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 17/118 (14%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
+++VG LP+S E +R F++YG+V +VKI++D+ T R K +GFV N A AI++
Sbjct: 2 NIFVGSLPFSVEEADLRGYFEEYGAVESVKIISDKFTGRSKGFGFVEMANDAEAQKAIDE 61
Query: 100 MNGRTIDGR--VVRVSEVATRG------RKSNSGRDQFRHGHRHKGRDRDNNRHRDRY 149
+NG TI+GR VV SE G R + R F + +RDNN R RY
Sbjct: 62 LNGGTIEGRKIVVNKSEPKPEGERRSFDRNAGGSRGGFSN-------NRDNN-SRGRY 111
>gi|302814001|ref|XP_002988685.1| hypothetical protein SELMODRAFT_18499 [Selaginella moellendorffii]
gi|300143506|gb|EFJ10196.1| hypothetical protein SELMODRAFT_18499 [Selaginella moellendorffii]
Length = 135
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE +VGGL ++ + ++ F YG+V+ K+V DR T R + +GFVTFG+ S DA
Sbjct: 6 DEFRCFVGGLSWATTDRNLEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDENSMQDA 65
Query: 97 INDMNGRTIDGRVVRVSEV 115
I+ M+G+ +DGR + VS+
Sbjct: 66 IDGMHGKDLDGRSITVSKA 84
>gi|115456325|ref|NP_001051763.1| Os03g0826400 [Oryza sativa Japonica Group]
gi|122246709|sp|Q10B98.1|C3H25_ORYSJ RecName: Full=Zinc finger CCCH domain-containing protein 25;
Short=OsC3H25
gi|15042832|gb|AAK82455.1|AC091247_22 putative RNA binding protein [Oryza sativa Japonica Group]
gi|18855068|gb|AAL79760.1|AC096687_24 putative small nuclear ribonucleoprotein [Oryza sativa Japonica
Group]
gi|108711850|gb|ABF99645.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550234|dbj|BAF13677.1| Os03g0826400 [Oryza sativa Japonica Group]
gi|125588469|gb|EAZ29133.1| hypothetical protein OsJ_13196 [Oryza sativa Japonica Group]
Length = 312
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + V+VGG+PY E + VF +YG VV V +V D+ T + K + F+ + + RS + A
Sbjct: 34 DSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILA 93
Query: 97 INDMNGRTIDGRVVRVSEVA 116
++++NG + GR+VRV V+
Sbjct: 94 VDNLNGAKVLGRIVRVDHVS 113
>gi|291407441|ref|XP_002719942.1| PREDICTED: RNA binding motif protein 3 [Oryctolagus cuniculus]
Length = 155
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E +++GGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFIGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|71000291|ref|XP_754840.1| nucleolin protein Nsr1 [Aspergillus fumigatus Af293]
gi|66852477|gb|EAL92802.1| nucleolin protein Nsr1, putative [Aspergillus fumigatus Af293]
Length = 546
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSA 93
T + +++VG +P+SANEDSV ++F + G++V +++ D S R K +G+V F + A
Sbjct: 403 TSPESDTLFVGNIPFSANEDSVSELFGQSGTIVGIRLPTDPESGRPKGFGYVQFSSVDEA 462
Query: 94 VDAINDMNGRTIDGRVVRV 112
A ND+NG ++GR VR+
Sbjct: 463 RQAFNDLNGAELNGRPVRL 481
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 21/114 (18%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
++++VG L ++ +E+ +R+ F+ +G + V+IV DR S R + +G+V + N A A N
Sbjct: 302 ANLFVGNLSWNVDEEWLRQEFESFGELSGVRIVTDRDSGRSRGFGYVEYVNAADAAKAYN 361
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDR 152
IDGR + + + AT GR +NN ++DR Q R
Sbjct: 362 AKKDTEIDGRKINL-DYAT-------------------GRPANNNNNQDRAQAR 395
>gi|159127852|gb|EDP52967.1| nucleolin protein Nsr1, putative [Aspergillus fumigatus A1163]
Length = 546
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSA 93
T + +++VG +P+SANEDSV ++F + G++V +++ D S R K +G+V F + A
Sbjct: 403 TSPESDTLFVGNIPFSANEDSVSELFGQSGTIVGIRLPTDPESGRPKGFGYVQFSSVDEA 462
Query: 94 VDAINDMNGRTIDGRVVRV 112
A ND+NG ++GR VR+
Sbjct: 463 RQAFNDLNGAELNGRPVRL 481
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 21/114 (18%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
++++VG L ++ +E+ +R+ F+ +G + V+IV DR S R + +G+V + N A A N
Sbjct: 302 ANLFVGNLSWNVDEEWLRQEFESFGELSGVRIVTDRDSGRSRGFGYVEYVNAADAAKAYN 361
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDR 152
IDGR + + + AT GR +NN ++DR Q R
Sbjct: 362 AKKDTEIDGRKINL-DYAT-------------------GRPANNNNNQDRAQAR 395
>gi|410989439|ref|XP_004000969.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Felis catus]
Length = 507
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 64/118 (54%), Gaps = 12/118 (10%)
Query: 11 VSTSIVVPI-KARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKV 59
S + P+ K ++I L E V++ + D+ S +++GGLPY E + V
Sbjct: 177 TSACLCSPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICV 236
Query: 60 FDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
F +YG +V + +V D+ T + K + F+ + + RS V A+++ NG I GR +RV V+
Sbjct: 237 FSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVS 294
>gi|116783558|gb|ABK22994.1| unknown [Picea sitchensis]
Length = 157
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S V+VGGL Y ++ ++R+ F +G V+ KI+NDR T R + +GFVTF +P A A+
Sbjct: 39 SKVFVGGLSYGVDDQTLRESFATFGDVMEAKIINDRETGRSRGFGFVTFASPDEANAAVE 98
Query: 99 DMNGRTIDGRVVRV 112
M+G+ + GR +RV
Sbjct: 99 AMDGKDLQGRSIRV 112
>gi|149015798|gb|EDL75122.1| similar to heterogeneous nuclear ribonucleoprotein G - human,
isoform CRA_a [Rattus norvegicus]
Length = 306
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|431893576|gb|ELK03439.1| Putative RNA-binding protein 3 [Pteropus alecto]
Length = 213
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Query: 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNP 90
+ +E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP
Sbjct: 55 ITAMSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNP 114
Query: 91 RSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
A DA+ MNG ++DGR +RV R + G
Sbjct: 115 EHASDAMRAMNGESLDGRQIRVDHAGKSARGTRGG 149
>gi|426257071|ref|XP_004022158.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Ovis aries]
gi|426257073|ref|XP_004022159.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Ovis aries]
gi|426257075|ref|XP_004022160.1| PREDICTED: putative RNA-binding protein 3 isoform 3 [Ovis aries]
gi|426257077|ref|XP_004022161.1| PREDICTED: putative RNA-binding protein 3 isoform 4 [Ovis aries]
gi|426257079|ref|XP_004022162.1| PREDICTED: putative RNA-binding protein 3 isoform 5 [Ovis aries]
Length = 160
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A +A
Sbjct: 4 EEGKLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R S G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGSRGG 92
>gi|148710225|gb|EDL42171.1| RNA binding motif protein, X chromosome, isoform CRA_b [Mus
musculus]
Length = 301
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|82802769|gb|ABB92435.1| RBM1 [Homo sapiens]
Length = 384
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|21388660|dbj|BAC00786.1| glycine-rich RNA-binding protein [Physcomitrella patens]
Length = 178
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ +E +VGGL ++ + S+ + F +G VV K++ DR T R + +GFVTF + S
Sbjct: 1 MGEEFRCFVGGLAWATTDGSLEEAFRPFGEVVQCKVITDRETGRSRGFGFVTFADENSMN 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
+AI DMNG+ +DGR + V++
Sbjct: 61 EAIKDMNGKELDGRNITVNQA 81
>gi|542850|pir||S41766 heterogeneous nuclear ribonucleoprotein G - human
Length = 437
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|322788027|gb|EFZ13868.1| hypothetical protein SINV_14012 [Solenopsis invicta]
Length = 291
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 35 TIDDES-------SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
TI D+S SV+VG +PY A E++++ +F + G V++ K+V DR T + K YGF
Sbjct: 5 TISDQSLMDKSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCE 64
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NG I GR +RV T
Sbjct: 65 YKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|20257675|gb|AAM16003.1| glycine-rich RNA binding protein [Zea mays]
Length = 156
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 25 FNLIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCY 82
F + ER +M D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +
Sbjct: 2 FWFVGEREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGF 61
Query: 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
GFVTF + AI MNG+ +DGR + V+E
Sbjct: 62 GFVTFSTEDAMRSAIEGMNGKELDGRNITVNEA 94
>gi|20257669|gb|AAM16000.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 25 FNLIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCY 82
F + ER +M D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +
Sbjct: 2 FWFVGEREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGF 61
Query: 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
GFVTF + AI MNG+ +DGR + V+E
Sbjct: 62 GFVTFSTEDAMRSAIEGMNGKELDGRNITVNEA 94
>gi|351715732|gb|EHB18651.1| Heterogeneous nuclear ribonucleoprotein G [Heterocephalus glaber]
Length = 356
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|170649643|gb|ACB21230.1| cold inducible RNA binding protein (predicted) [Callicebus moloch]
Length = 166
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRG-KCYGFVTFGNPRSAVDA 96
DE ++VG L + NE S+ +VF KYG + V +V DR T+G + +GF T N A DA
Sbjct: 4 DEGKLFVGALSFDTNEQSLEQVFSKYGQISEVVVVKDRETQGSRGFGFATLENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MN +++DGR +RV +
Sbjct: 64 MMAMNRKSVDGRQIRVGQAG 83
>gi|168038795|ref|XP_001771885.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676836|gb|EDQ63314.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 157
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GGL ++ +E+++R F +G+V VKI+ DR T R + +GFV F +P+ A A+
Sbjct: 45 SKLFIGGLAWATDENTLRDAFGSFGTVTDVKIILDRDTGRSRGFGFVNFTSPQEAEVALQ 104
Query: 99 DMNGRTIDGRVVRV 112
+M+GR + GR +RV
Sbjct: 105 EMDGRELAGRQIRV 118
>gi|407262829|ref|XP_003945671.1| PREDICTED: putative RNA-binding protein 3-like [Mus musculus]
Length = 154
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRV 112
+ MNG ++DGR +RV
Sbjct: 64 MRAMNGESLDGRQIRV 79
>gi|149015800|gb|EDL75124.1| similar to heterogeneous nuclear ribonucleoprotein G - human,
isoform CRA_c [Rattus norvegicus]
Length = 289
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|5579009|emb|CAB51361.1| heterogeneous nuclear ribonucleoprotein G [Mus musculus]
gi|74228065|dbj|BAE37998.1| unnamed protein product [Mus musculus]
gi|148710226|gb|EDL42172.1| RNA binding motif protein, X chromosome, isoform CRA_c [Mus
musculus]
Length = 289
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|20257699|gb|AAM16015.1| glycine-rich RNA binding protein [Zea mays]
gi|20257705|gb|AAM16018.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 25 FNLIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCY 82
F + ER +M D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +
Sbjct: 1 FWFVGEREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGF 60
Query: 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
GFVTF + AI MNG+ +DGR + V+E
Sbjct: 61 GFVTFSXXXAMRSAIEGMNGKELDGRNITVNEA 93
>gi|20257679|gb|AAM16005.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 25 FNLIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCY 82
F + ER +M D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +
Sbjct: 1 FWFVGEREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGF 60
Query: 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
GFVTF + AI MNG+ +DGR + V+E
Sbjct: 61 GFVTFSXXXAMRSAIEGMNGKELDGRNITVNEA 93
>gi|82802771|gb|ABB92436.1| RBM1 [Pan troglodytes]
gi|82802773|gb|ABB92437.1| RBM1 [Gorilla gorilla]
Length = 385
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|66516308|ref|XP_623321.1| PREDICTED: cleavage stimulation factor subunit 2 [Apis mellifera]
Length = 441
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 35 TIDDES-------SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
TI D+S SV+VG +PY A E++++ +F + G V++ K+V DR T + K YGF
Sbjct: 5 TISDQSLMDKSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCE 64
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NG I GR +RV T
Sbjct: 65 YKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|327284806|ref|XP_003227126.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Anolis
carolinensis]
Length = 287
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
+D + V+VGGLPY E + VF +YG +V + +V D+ T + K + F+ + + RS +
Sbjct: 33 NDSAWVFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFICYEDQRSTIL 92
Query: 96 AINDMNGRTIDGRVVRVSEVAT-RGRKSNSGRDQFRHGHRHKG 137
A+++ NG I GR +RV VA R K + D+ R KG
Sbjct: 93 AVDNFNGIKIKGRTIRVDHVANYRPPKDSEDIDEVTKTLREKG 135
>gi|2267593|gb|AAB63589.1| glycine-rich RNA-binding protein [Oryza sativa Indica Group]
Length = 165
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + S+ F YG ++ KI+NDR T R + +GFVTF + ++ DAI M+
Sbjct: 11 FVGGLAWATDNRSLEAAFSTYGEILESKIINDRETGRSRGFGFVTFSSEQAMRDAIEGMS 70
Query: 102 GRTIDGRVVRVSEVATR 118
G+ +DGR + V+E +R
Sbjct: 71 GKELDGRNITVNEAQSR 87
>gi|307719265|ref|YP_003874797.1| RNA-binding region RNP-1 [Spirochaeta thermophila DSM 6192]
gi|386347364|ref|YP_006045613.1| RNP-1 like RNA-binding protein [Spirochaeta thermophila DSM 6578]
gi|306532990|gb|ADN02524.1| RNA-binding region RNP-1 [Spirochaeta thermophila DSM 6192]
gi|339412331|gb|AEJ61896.1| RNP-1 like RNA-binding protein [Spirochaeta thermophila DSM 6578]
Length = 101
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 56/90 (62%), Gaps = 1/90 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
+Y G L Y ED++R++F++YG V +VKI+ DR S K +GFV + + AI+ +
Sbjct: 5 IYAGNLNYQTTEDTLRQLFEQYGEVESVKIITDRDSGFSKGFGFVEMASEEAGEAAISAL 64
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFR 130
N +DGR +RV++ RG +S+ G D+ R
Sbjct: 65 NQHEVDGRQLRVNKAHERGGRSSFGGDRSR 94
>gi|431891348|gb|ELK02224.1| Heterogeneous nuclear ribonucleoprotein G [Pteropus alecto]
Length = 278
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|357152879|ref|XP_003576265.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 165
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE +VGGL ++ ++ +++ F +G ++ KI+ DR T R + +GFVTF S A
Sbjct: 2 DEYRCFVGGLAWATDDHNLQSAFSNFGEILDAKIIQDRETGRSRGFGFVTFATEESMQAA 61
Query: 97 INDMNGRTIDGRVVRVSEVATR 118
I MNG+ +DGR + V++ +R
Sbjct: 62 IEGMNGKELDGRSITVNQAQSR 83
>gi|327279534|ref|XP_003224511.1| PREDICTED: putative RNA-binding protein 3-like isoform 2 [Anolis
carolinensis]
Length = 231
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNP 90
+ + +E ++VGGL + +E + + F +G + V ++ D+ T R + +GF+TF NP
Sbjct: 77 ITIMSSEEGKLFVGGLNFDTDEQGLEQHFSSFGPISEVVVIKDKETQRSRGFGFITFANP 136
Query: 91 RSAVDAINDMNGRTIDGRVVRV 112
A DA+ MNG ++DGR +RV
Sbjct: 137 EHASDAMRAMNGESVDGRQIRV 158
>gi|380811822|gb|AFE77786.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383417591|gb|AFH32009.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
Length = 289
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|296236539|ref|XP_002763369.1| PREDICTED: RNA-binding motif protein, X chromosome [Callithrix
jacchus]
Length = 289
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|82802775|gb|ABB92438.1| RBM1 [Pongo pygmaeus]
Length = 385
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|297279100|ref|XP_002801676.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 1
[Macaca mulatta]
gi|297279102|ref|XP_002801677.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 2
[Macaca mulatta]
Length = 391
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|187373099|gb|ACD03270.1| glycine-rich RNA-binding protein [Nicotiana tabacum]
Length = 157
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ + ++ F +YG +V KI+NDR T R + +GFVTF + ++ DAI
Sbjct: 5 EYRCFVGGLAWATTDQTLGDAFSQYGEIVDSKIINDRETGRSRGFGFVTFKDEQAMRDAI 64
Query: 98 NDMNGRTIDGRVVRVSEV 115
MNG+ +DGR + V+E
Sbjct: 65 EGMNGQDLDGRNITVNEA 82
>gi|332809466|ref|XP_003339040.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 [Pan
troglodytes]
gi|332809468|ref|XP_003308251.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 [Pan
troglodytes]
gi|426330271|ref|XP_004026144.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 3
[Gorilla gorilla gorilla]
gi|426330273|ref|XP_004026145.1| PREDICTED: kynurenine--oxoglutarate transaminase 3 isoform 4
[Gorilla gorilla gorilla]
Length = 391
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|182888560|ref|NP_001107258.2| RNA-binding motif protein, X-linked 2 [Rattus norvegicus]
gi|374253659|sp|B0BN49.1|RBMX2_RAT RecName: Full=RNA-binding motif protein, X-linked 2
gi|165970686|gb|AAI58685.1| Rbmx2 protein [Rattus norvegicus]
Length = 328
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTI----------DDESSVYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D + +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS V A+++ NG I GR +RV VA
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVA 113
>gi|20257691|gb|AAM16011.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 25 FNLIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCY 82
F + ER +M D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +
Sbjct: 1 FWFVGEREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGF 60
Query: 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
GFVTF + AI MNG+ +DGR + V+E
Sbjct: 61 GFVTFSTEDAMRSAIEGMNGKELDGRNITVNEA 93
>gi|20257667|gb|AAM15999.1| glycine-rich RNA binding protein [Zea mays]
gi|20257671|gb|AAM16001.1| glycine-rich RNA binding protein [Zea mays]
gi|20257677|gb|AAM16004.1| glycine-rich RNA binding protein [Zea mays]
gi|20257685|gb|AAM16008.1| glycine-rich RNA binding protein [Zea mays]
gi|20257703|gb|AAM16017.1| glycine-rich RNA binding protein [Zea mays]
gi|20257717|gb|AAM16024.1| glycine-rich RNA binding protein [Zea mays]
gi|20257719|gb|AAM16025.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 25 FNLIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCY 82
F + ER +M D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +
Sbjct: 1 FWFVGEREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGF 60
Query: 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
GFVTF + AI MNG+ +DGR + V+E
Sbjct: 61 GFVTFSTEDAMRSAIEGMNGKELDGRNITVNEA 93
>gi|82802779|gb|ABB92440.1| RBM1 [Chlorocebus sabaeus]
Length = 385
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|380028061|ref|XP_003697730.1| PREDICTED: cleavage stimulation factor subunit 2-like [Apis florea]
Length = 441
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 35 TIDDES-------SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
TI D+S SV+VG +PY A E++++ +F + G V++ K+V DR T + K YGF
Sbjct: 5 TISDQSLMDKSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCE 64
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NG I GR +RV T
Sbjct: 65 YKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|357119387|ref|XP_003561423.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 161
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ ++ ++ F +G ++ KI+NDR T R + +GFVTF + +S DAI MN
Sbjct: 9 FVGGLAWATDDRGLQDAFSSFGEIIDSKIINDRETGRSRGFGFVTFASEQSMRDAIEGMN 68
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 69 GKDLDGRNITVNEA 82
>gi|21361809|ref|NP_062556.2| RNA binding motif protein, X-linked-like-1 [Homo sapiens]
gi|242117971|ref|NP_001156008.1| RNA binding motif protein, X-linked-like-1 [Homo sapiens]
gi|74760797|sp|Q96E39.1|RMXL1_HUMAN RecName: Full=RNA binding motif protein, X-linked-like-1; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G-like 1;
Contains: RecName: Full=RNA binding motif protein,
X-linked-like-1, N-terminally processed
gi|15277908|gb|AAH12942.1| Cysteine conjugate-beta lyase 2 [Homo sapiens]
gi|57997143|emb|CAI46148.1| hypothetical protein [Homo sapiens]
gi|119593561|gb|EAW73155.1| hCG23341, isoform CRA_b [Homo sapiens]
gi|119593562|gb|EAW73156.1| hCG23341, isoform CRA_b [Homo sapiens]
gi|208967733|dbj|BAG72512.1| cysteine conjugate-beta lyase 2 [synthetic construct]
Length = 390
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|149745621|ref|XP_001500162.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Equus
caballus]
Length = 327
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 12/131 (9%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT-RGRKSNSGR 126
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+ R K +
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEEM 124
Query: 127 DQFRHGHRHKG 137
D G + KG
Sbjct: 125 DDVSKGLQEKG 135
>gi|1033165|gb|AAC16917.1| Y-chromosome RNA recognition motif protein, partial [Homo sapiens]
Length = 220
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +A
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64
Query: 97 INDMNGRTIDGRVVRVSEV 115
DMNG+++ G+ ++V +
Sbjct: 65 AKDMNGKSLHGKAIKVEQA 83
>gi|403300126|ref|XP_003940808.1| PREDICTED: RNA binding motif protein, X-linked-like-1-like, partial
[Saimiri boliviensis boliviensis]
Length = 268
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|344292751|ref|XP_003418089.1| PREDICTED: putative RNA-binding protein 3-like [Loxodonta africana]
Length = 154
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|301100496|ref|XP_002899338.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262104255|gb|EEY62307.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 414
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/87 (41%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E SV+VG +PY ED ++++F + GSV+ ++V DR T + K YGF + + +A+ A+
Sbjct: 12 ERSVFVGNIPYDVTEDMLKEIFSEAGSVMNFRLVTDRETGKPKGYGFCEYADGATALSAM 71
Query: 98 NDMNGRTIDGRVVRVSEVATRGRKSNS 124
++NG I+GR +RV + A G KSNS
Sbjct: 72 RNLNGYEINGRNLRV-DFADGGDKSNS 97
>gi|436841541|ref|YP_007325919.1| RNP-1 like RNA-binding protein [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
gi|432170447|emb|CCO23818.1| RNP-1 like RNA-binding protein [Desulfovibrio hydrothermalis AM13 =
DSM 14728]
Length = 87
Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG LP+SA+ED VR F+ YG V++VK++ DR T R + +GFV + A+DAI++
Sbjct: 4 NIYVGNLPWSASEDDVRAAFEAYGEVISVKLIEDRETGRPRGFGFVEMED-NGALDAIDN 62
Query: 100 MNGRTIDGRVVRVSEVATRG 119
++G+ GR ++V+E R
Sbjct: 63 LDGKDFGGRNLKVNEAKPRA 82
>gi|326487468|dbj|BAJ89718.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510625|dbj|BAJ87529.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518508|dbj|BAJ88283.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326520529|dbj|BAK07523.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326527353|dbj|BAK04618.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 161
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S++ F KYG V+ KI+ DR T R + +GFVTF + +
Sbjct: 3 DVEYRCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQ 62
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 63 AIEAMNGQDLDGRNITVNEA 82
>gi|114145394|dbj|BAF30986.1| glycine-rich RNA-binding protein [Triticum aestivum]
Length = 163
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S++ F KYG V+ KI+ DR T R + +GFVTF + +
Sbjct: 3 DVEYRCFVGGLAWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQ 62
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 63 AIEAMNGQDLDGRNITVNEA 82
>gi|417396785|gb|JAA45426.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15 [Desmodus rotundus]
Length = 190
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV R +
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|126324409|ref|XP_001377779.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Monodelphis
domestica]
Length = 198
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDA 96
D + V+VGGLPY E + VF +YG +V + +V D+ TR K + F+ + + RS + A
Sbjct: 34 DSAWVFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTRKSKGFCFLCYEDQRSTILA 93
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+++ NG I GR +RV VA
Sbjct: 94 VDNFNGIKIRGRTIRVDHVA 113
>gi|326505708|dbj|BAJ95525.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 226
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 61/108 (56%), Gaps = 7/108 (6%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M +DE +VG L +S ++S++ F KYG V K+V D+ S R + + FVTF ++
Sbjct: 1 MADEDEYRCFVGNLSWSTTDESLKDAFSKYGKVTEAKVVMDKFSGRSRGFAFVTFDEKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDR 140
+AI DMNG ++GR + V + +G GRD R+G R RDR
Sbjct: 61 MEEAIEDMNGLDLEGRAITVDKAQPQG----VGRD--RNGDRDFDRDR 102
>gi|343432668|ref|NP_001230348.1| RNA binding motif (RNP1, RRM) protein 3 [Sus scrofa]
Length = 156
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A +A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV R +
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|119492702|ref|XP_001263670.1| ribonucleoprotein, chloroplast [Neosartorya fischeri NRRL 181]
gi|119411830|gb|EAW21773.1| ribonucleoprotein, chloroplast [Neosartorya fischeri NRRL 181]
Length = 533
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSAVDAIND 99
+++VG +P+SANEDSV ++F + G++V +++ D S R K +G+V F + A A ND
Sbjct: 396 TLFVGNIPFSANEDSVSELFGQSGTIVGIRLPTDPESGRPKGFGYVQFSSVDEARQAFND 455
Query: 100 MNGRTIDGRVVRV 112
+NG ++GR VR+
Sbjct: 456 LNGAELNGRPVRL 468
>gi|82802777|gb|ABB92439.1| RBM1 [Hylobates lar]
Length = 385
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|119579519|gb|EAW59115.1| hCG19443 [Homo sapiens]
Length = 93
Score = 66.6 bits (161), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
D +++ GL NE ++ VF KYG + V ++ DR+++ + + F+TF NP A +A
Sbjct: 5 DHPGKLFICGLNRETNEKMLKAVFGKYGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
DMNG+++DG+ ++V E A + + GR
Sbjct: 65 AKDMNGKSLDGKAIKV-EQAKKPSFQSGGR 93
>gi|268563939|ref|XP_002647049.1| C. briggsae CBR-CPF-2 protein [Caenorhabditis briggsae]
Length = 335
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG + Y E+++R++F K G V+++K+V+DR T + K YGF+ F + +A AI
Sbjct: 13 SVFVGNISYDVTEETIRQIFTKAGHVLSIKMVHDRETGKPKGYGFIEFPDIATADTAIRV 72
Query: 100 MNGRTIDGRVVRVSEVA 116
+NG + GRV+RV A
Sbjct: 73 LNGYELGGRVLRVDSAA 89
>gi|327286673|ref|XP_003228054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 2
[Anolis carolinensis]
Length = 374
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|321260943|ref|XP_003195191.1| glycine-rich RNA binding protein [Cryptococcus gattii WM276]
gi|317461664|gb|ADV23404.1| Glycine-rich RNA binding protein, putative [Cryptococcus gattii
WM276]
Length = 177
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S VYVG L +++ +D++ +VF YG+V ++ DR T R + +GFVT+G+P+ A AI
Sbjct: 4 SKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAAIA 63
Query: 99 DMNGRTIDGRVVRVSEVATR 118
MN + +DGR VRV+ +R
Sbjct: 64 AMNEQELDGRRVRVNMANSR 83
>gi|410227798|gb|JAA11118.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227802|gb|JAA11120.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227804|gb|JAA11121.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227806|gb|JAA11122.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227808|gb|JAA11123.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227810|gb|JAA11124.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410227812|gb|JAA11125.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
Length = 391
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|389741761|gb|EIM82949.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 145
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+ VYVG L ++ +D++R+ F ++G+++ ++ DR T R + +GFVTFG P A AIN
Sbjct: 3 AKVYVGNLSWNTTDDTLRQAFSEFGAILDSIVMRDRETGRSRGFGFVTFGTPEEADAAIN 62
Query: 99 DMNGRTIDGRVVRVS 113
++N + +DGR +RV+
Sbjct: 63 NLNEQELDGRRIRVN 77
>gi|327286671|ref|XP_003228053.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like isoform 1
[Anolis carolinensis]
Length = 384
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|284022113|sp|Q925G0.2|RBM3_RAT RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3
Length = 155
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A D
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDV 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|71043834|ref|NP_001020834.1| RNA-binding motif protein, X chromosome [Rattus norvegicus]
gi|81907907|sp|Q4V898.1|RBMX_RAT RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; AltName: Full=RNA-binding motif protein,
X chromosome retrogene; AltName: Full=RNA-binding motif
protein, X chromosome retrogene-like; Contains: RecName:
Full=RNA-binding motif protein, X chromosome,
N-terminally processed
gi|66910650|gb|AAH97479.1| RNA binding motif protein, X-linked [Rattus norvegicus]
gi|149015799|gb|EDL75123.1| similar to heterogeneous nuclear ribonucleoprotein G - human,
isoform CRA_b [Rattus norvegicus]
Length = 390
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|58269652|ref|XP_571982.1| glycine-rich RNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228218|gb|AAW44675.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 182
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S VYVG L +++ +D++ +VF YG+V ++ DR T R + +GFVT+G+P+ A AI
Sbjct: 4 SKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAAIA 63
Query: 99 DMNGRTIDGRVVRVSEVATR 118
MN + +DGR VRV+ +R
Sbjct: 64 AMNEQELDGRRVRVNMANSR 83
>gi|799015|emb|CAA89058.1| putative glycine rich RNA binding protein [Solanum tuberosum]
Length = 175
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + ++ F +Y VV KI+NDR T R + +GFVTF + ++ D
Sbjct: 3 DVEYRCFVGGLAWATTDQTLSDAFSQYAEVVESKIINDRETGRSRGFGFVTFKDEQAMRD 62
Query: 96 AINDMNGRTIDGRVVRVSEVATRG 119
AI MN + +DGR + V+E +RG
Sbjct: 63 AIEGMNRQDLDGRNITVNEAQSRG 86
>gi|4826974|ref|NP_005049.1| RNA-binding motif protein, Y chromosome, family 1 member A1 [Homo
sapiens]
gi|378522864|sp|P0DJD3.1|RBY1A_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member A1; AltName: Full=RNA-binding motif protein 1;
AltName: Full=RNA-binding motif protein 2; AltName:
Full=Y chromosome RNA recognition motif 1; Short=hRBMY
gi|452367|emb|CAA53659.1| unnamed protein product [Homo sapiens]
Length = 496
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>gi|426252723|ref|XP_004020052.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 1 [Ovis aries]
Length = 572
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|15231557|ref|NP_189273.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
gi|15983477|gb|AAL11606.1|AF424613_1 AT3g26420/F20C19_14 [Arabidopsis thaliana]
gi|9294301|dbj|BAB02203.1| unnamed protein product [Arabidopsis thaliana]
gi|15451066|gb|AAK96804.1| Unknown protein [Arabidopsis thaliana]
gi|18377412|gb|AAL66872.1| unknown protein [Arabidopsis thaliana]
gi|62320797|dbj|BAD93728.1| RNA-binding protein [Arabidopsis thaliana]
gi|110742443|dbj|BAE99140.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332643635|gb|AEE77156.1| RNA recognition motif and CCHC-type zinc finger domain-containing
protein [Arabidopsis thaliana]
Length = 245
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 64/120 (53%), Gaps = 15/120 (12%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ D E ++GGL ++ ++ +R F+KYG +V K+V D+ S R + +GF+TF ++
Sbjct: 1 MSEDPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDR 152
+AI MNG +DGR + V + Q G GRD D +R RDR DR
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKA------------QPHQG--GAGRDNDGDRGRDRGYDR 106
>gi|378522970|sp|P0DJD4.1|RBY1C_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member C
Length = 496
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>gi|375108277|ref|ZP_09754538.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
gi|374669008|gb|EHR73793.1| RRM domain-containing RNA-binding protein [Burkholderiales
bacterium JOSHI_001]
Length = 167
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG L YS ++S++ F ++G+V + K++ DR T R K +GFV G A AIN M
Sbjct: 5 LYVGNLAYSVRDESLQAAFSQFGTVTSAKVMMDRETGRSKGFGFVEMGTGAEAQAAINGM 64
Query: 101 NGRTIDGRVVRVSEVATR 118
NG+ ++GR V V+E R
Sbjct: 65 NGQPLEGRAVVVNEARPR 82
>gi|56090527|ref|NP_001006118.2| RNA-binding motif protein, Y chromosome, family 1 member E [Homo
sapiens]
gi|190360154|sp|A6NEQ0.1|RBY1E_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member E
gi|182888281|gb|AAI60023.1| RNA binding motif protein, Y-linked, family 1, member E [synthetic
construct]
Length = 496
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>gi|20257707|gb|AAM16019.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 25 FNLIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCY 82
F + ER +M D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +
Sbjct: 1 FWFVGEREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGF 60
Query: 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
GFVTF + AI MNG+ +DGR + V+E
Sbjct: 61 GFVTFSXEDAMRSAIEGMNGKELDGRNITVNEA 93
>gi|297692597|ref|XP_002823635.1| PREDICTED: RNA binding motif protein, X-linked-like-1-like [Pongo
abelii]
Length = 212
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 49/79 (62%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
D +++GGL NE +++ VF KYG + V ++ D + + + +TF +P A +A
Sbjct: 40 DPPGKLFIGGLNTEPNEKALQAVFGKYGHIAEVLLMKDGEIKSRDFALITFESPADAKNA 99
Query: 97 INDMNGRTIDGRVVRVSEV 115
+NDMNG+++DG+ ++V +
Sbjct: 100 VNDMNGKSLDGKAIQVEQA 118
>gi|108863012|gb|ABG22105.1| Glycine-rich RNA-binding protein GRP1A, putative, expressed [Oryza
sativa Japonica Group]
Length = 117
Score = 66.2 bits (160), Expect = 2e-08, Method: Composition-based stats.
Identities = 33/83 (39%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F +G ++ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRSLEAAFSTFGEILESKIINDRETGRSRGFGFVTFSSEQAMRD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 65 AIEGMNGKELDGRNITVNEAQSR 87
>gi|56090533|ref|NP_001006120.2| RNA-binding motif protein, Y chromosome, family 1 member D [Homo
sapiens]
gi|190360153|sp|P0C7P1.1|RBY1D_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member D
Length = 496
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>gi|449267951|gb|EMC78842.1| Heterogeneous nuclear ribonucleoprotein G [Columba livia]
Length = 385
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAQ 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|431908562|gb|ELK12156.1| RNA-binding motif protein, X-linked 2 [Pteropus alecto]
Length = 346
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 25 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 84
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 85 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 133
>gi|345496803|ref|XP_003427819.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Nasonia vitripennis]
Length = 425
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 35 TIDDES-------SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
TI D+S SV+VG +PY A E++++ +F + G V++ K+V DR T + K YGF
Sbjct: 5 TISDQSLMDKSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCE 64
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NG I GR +RV T
Sbjct: 65 YKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|321460847|gb|EFX71885.1| hypothetical protein DAPPUDRAFT_93311 [Daphnia pulex]
Length = 81
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+SV+VG +PY +ED ++ +F + G VV+ +IV DR T R + +GF F +P SA A+
Sbjct: 2 ASVFVGNIPYGVSEDQLKAIFSEAGPVVSFRIVQDRETGRSRGFGFCEFQSPDSAQTAMR 61
Query: 99 DMNGRTIDGRVVRV 112
++NG ++GR +RV
Sbjct: 62 NLNGYELNGRSLRV 75
>gi|3256007|emb|CAA80599.1| hnRNP G protein [Homo sapiens]
Length = 391
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|58269650|ref|XP_571981.1| glycine-rich RNA binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134113905|ref|XP_774200.1| hypothetical protein CNBG1820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256835|gb|EAL19553.1| hypothetical protein CNBG1820 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228217|gb|AAW44674.1| glycine-rich RNA binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 161
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S VYVG L +++ +D++ +VF YG+V ++ DR T R + +GFVT+G+P+ A AI
Sbjct: 4 SKVYVGNLSWNSTDDTLLQVFSAYGTVTDCIVMKDRETGRSRGFGFVTYGSPQEAEAAIA 63
Query: 99 DMNGRTIDGRVVRVSEVATR 118
MN + +DGR VRV+ +R
Sbjct: 64 AMNEQELDGRRVRVNMANSR 83
>gi|354475287|ref|XP_003499861.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like
[Cricetulus griseus]
Length = 289
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|54633344|ref|NP_001006121.1| RNA-binding motif protein, Y chromosome, family 1 member B [Homo
sapiens]
gi|190360159|sp|A6NDE4.2|RBY1B_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member B
Length = 496
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>gi|307172466|gb|EFN63915.1| Cleavage stimulation factor 64 kDa subunit [Camponotus floridanus]
Length = 438
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 35 TIDDES-------SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
TI D+S SV+VG +PY A E++++ +F + G V++ K+V DR T + K YGF
Sbjct: 5 TISDQSLMDKSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCE 64
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NG I GR +RV T
Sbjct: 65 YKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|344286268|ref|XP_003414881.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Loxodonta
africana]
Length = 401
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 66/122 (54%), Gaps = 12/122 (9%)
Query: 6 GGRQGVSTSIVVPIKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDS 55
G ++G T + K ++I L E V++ + D+ S V++GGLPY E
Sbjct: 67 GAKRG-PTKMNPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWVFLGGLPYELTEGD 125
Query: 56 VRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114
+ VF +YG VV + +V D+ T + K + F+ + + RS V A+++ NG I GR +RV
Sbjct: 126 IICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDH 185
Query: 115 VA 116
V+
Sbjct: 186 VS 187
>gi|291401898|ref|XP_002717345.1| PREDICTED: RNA binding motif protein, X-linked-like [Oryctolagus
cuniculus]
gi|291408303|ref|XP_002720376.1| PREDICTED: RNA binding motif protein, X-linked [Oryctolagus
cuniculus]
Length = 391
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|20257709|gb|AAM16020.1| glycine-rich RNA binding protein [Zea mays]
Length = 155
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 25 FNLIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCY 82
F + ER +M D E +VGGL ++ + S+ F YG V+ KI+ DR T R + +
Sbjct: 1 FWFVGEREEMAASDVEYRCFVGGLAWATDXHSLNNAFSTYGEVLESKIILDRETQRSRGF 60
Query: 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
GFVTF + AI MNG+ +DGR + V+E
Sbjct: 61 GFVTFSXXXAMRSAIEGMNGKELDGRNITVNEA 93
>gi|301769089|ref|XP_002919961.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like
[Ailuropoda melanoleuca]
gi|281352732|gb|EFB28316.1| hypothetical protein PANDA_008640 [Ailuropoda melanoleuca]
Length = 391
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|410308290|gb|JAA32745.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308292|gb|JAA32746.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308294|gb|JAA32747.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308296|gb|JAA32748.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308298|gb|JAA32749.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308300|gb|JAA32750.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308302|gb|JAA32751.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410308304|gb|JAA32752.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
Length = 391
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|226532482|ref|NP_001150574.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195640298|gb|ACG39617.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 253
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
S ++VGGL Y ++ S+R F KYG V+ KI+ DR S R + +GF+T+ + A AI
Sbjct: 34 SKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEASAAIT 93
Query: 99 DMNGRTIDGRVVRV 112
M+G+T+DGR +RV
Sbjct: 94 AMDGKTLDGRNIRV 107
>gi|426257491|ref|XP_004022360.1| PREDICTED: RNA-binding motif protein, X chromosome [Ovis aries]
Length = 391
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|355715855|gb|AES05424.1| RNA binding motif protein, X-linked [Mustela putorius furo]
Length = 392
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 5 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 64
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 65 DAARDMNGKSLDGKAIKV-EQATK 87
>gi|326924314|ref|XP_003208374.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like
[Meleagris gallopavo]
Length = 385
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|449498359|ref|XP_004175818.1| PREDICTED: RNA-binding motif protein, X chromosome isoform 2
[Taeniopygia guttata]
Length = 385
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|6755296|ref|NP_035382.1| RNA-binding motif protein, X chromosome [Mus musculus]
gi|262231769|ref|NP_001160095.1| RNA-binding motif protein, X chromosome [Mus musculus]
gi|81917893|sp|Q9WV02.1|RBMX_MOUSE RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|5579011|emb|CAB51362.1| heterogeneous nuclear ribonucleoprotein G [Mus musculus]
gi|13277600|gb|AAH03710.1| RNA binding motif protein, X chromosome [Mus musculus]
gi|74149379|dbj|BAE22448.1| unnamed protein product [Mus musculus]
gi|148710228|gb|EDL42174.1| RNA binding motif protein, X chromosome, isoform CRA_e [Mus
musculus]
Length = 391
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|2331131|gb|AAB66884.1| glycine-rich protein [Oryza sativa Japonica Group]
Length = 162
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ ++ S+ F YG ++ KI+NDR T R +GF+TF + +S DAI MN
Sbjct: 11 FVGGLAWATDDRSLEAAFSTYGEILDSKIINDRETGRSLGFGFITFSSEQSMRDAIEGMN 70
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 71 GKELDGRNITVNEA 84
>gi|285012962|ref|NP_001165510.1| heterogeneous nuclear ribonucleoprotein G [Bos taurus]
gi|348557903|ref|XP_003464758.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like [Cavia
porcellus]
gi|284080621|gb|ADB77884.1| Rbmx [Bos taurus]
gi|296471213|tpg|DAA13328.1| TPA: RNA binding motif protein, X-linked isoform 1 [Bos taurus]
gi|440895247|gb|ELR47495.1| Heterogeneous nuclear ribonucleoprotein G [Bos grunniens mutus]
Length = 391
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|120610816|ref|YP_970494.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
gi|120589280|gb|ABM32720.1| RNP-1-like RNA-binding protein [Acidovorax citrulli AAC00-1]
Length = 116
Score = 66.2 bits (160), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/85 (41%), Positives = 52/85 (61%), Gaps = 3/85 (3%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG LPYS ++S+R F ++G V + KI+ DR T R K +GFV + A AI +
Sbjct: 5 IYVGNLPYSVTDESLRSNFAEFGGVTSSKIMTDRETGRSKGFGFVEMSSAEDAQSAITGL 64
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSG 125
NG ++DGR + V+ R R++N G
Sbjct: 65 NGLSVDGRSIVVN--LARPREANGG 87
>gi|390474384|ref|XP_002757703.2| PREDICTED: RNA-binding motif protein, X chromosome-like, partial
[Callithrix jacchus]
Length = 391
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|291400889|ref|XP_002716811.1| PREDICTED: RNA binding motif protein, X-linked-like [Oryctolagus
cuniculus]
Length = 391
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|47124558|gb|AAH70298.1| RBMY1A1 protein [Homo sapiens]
gi|312151036|gb|ADQ32030.1| RNA binding motif protein, Y-linked, family 1, member A1 [synthetic
construct]
Length = 459
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>gi|224097264|ref|XP_002190045.1| PREDICTED: RNA-binding motif protein, X chromosome isoform 1
[Taeniopygia guttata]
Length = 377
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|297711157|ref|XP_002832216.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Pongo abelii]
Length = 438
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 51 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 110
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 111 DAARDMNGKSLDGKAIKV-EQATK 133
>gi|346716298|ref|NP_001231025.1| heterogeneous nuclear ribonucleoprotein G [Sus scrofa]
Length = 390
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|363543257|ref|NP_001241843.1| uncharacterized protein LOC100857047 [Zea mays]
gi|238007748|gb|ACR34909.1| unknown [Zea mays]
gi|413916459|gb|AFW56391.1| putative glycine-rich protein [Zea mays]
Length = 261
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
S ++VGGL Y ++ S+R F KYG V+ KI+ DR S R + +GF+T+ + A AI
Sbjct: 31 SKLFVGGLSYGTDDHSLRDEFAKYGQVIEAKIILDRESGRSRGFGFITYTSSEEASAAIT 90
Query: 99 DMNGRTIDGRVVRV 112
M+G+T+DGR +RV
Sbjct: 91 AMDGKTLDGRNIRV 104
>gi|223461509|gb|AAI40759.1| Unknown (protein for MGC:176435) [Homo sapiens]
Length = 459
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>gi|219519661|gb|AAI44460.1| Unknown (protein for MGC:178002) [Homo sapiens]
gi|223460910|gb|AAI36863.1| RBMY1D protein [Homo sapiens]
Length = 459
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>gi|392560296|gb|EIW53479.1| hypothetical protein TRAVEDRAFT_60908 [Trametes versicolor
FP-101664 SS1]
Length = 392
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 15/107 (14%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
V+VG +PY+ EDS+ VF G VV +++V DR T + K YGF F + +A+ A+ ++
Sbjct: 5 VFVGNVPYNMGEDSLIDVFKSVGQVVGLRLVFDRETGKPKGYGFCEFADHETALSAVRNL 64
Query: 101 NGRTIDGRVVRV----------SEVATRGRKSNSG--RDQF--RHGH 133
NG+ I GR +R+ + RG + G R Q+ RHGH
Sbjct: 65 NGQEIGGRPLRIDLADSDPFLEGKTTVRGEIIDGGETRAQWRERHGH 111
>gi|260834392|ref|XP_002612195.1| hypothetical protein BRAFLDRAFT_125379 [Branchiostoma floridae]
gi|229297569|gb|EEN68204.1| hypothetical protein BRAFLDRAFT_125379 [Branchiostoma floridae]
Length = 418
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + V+VGGLPY E V VF +YG +V + +V D+ T + K + F+ + N +S V A
Sbjct: 33 DSAWVFVGGLPYELTEGDVLCVFSQYGEIVNINMVRDKKTGKPKGFAFICYENQKSTVLA 92
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+++ NG I GR +RV V+
Sbjct: 93 VDNFNGVKIKGRTIRVDHVS 112
>gi|156553552|ref|XP_001601896.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Nasonia vitripennis]
Length = 434
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 35 TIDDES-------SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
TI D+S SV+VG +PY A E++++ +F + G V++ K+V DR T + K YGF
Sbjct: 5 TISDQSLMDKSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCE 64
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NG I GR +RV T
Sbjct: 65 YKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|344297709|ref|XP_003420539.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G [Loxodonta
africana]
Length = 391
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|119331082|ref|NP_001073196.1| heterogeneous nuclear ribonucleoprotein G [Gallus gallus]
gi|53130710|emb|CAG31684.1| hypothetical protein RCJMB04_9j22 [Gallus gallus]
gi|169139272|gb|ACA48585.1| RNA binding motif protein, X-linked [Gallus gallus]
Length = 385
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|102269210|gb|ABF55966.2| cleavage stimulation factor 64-kDa subunit [Bombyx mori]
Length = 326
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 29 EERVKMTIDDES--SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFV 85
+E+ + +I D+S SV+VG +PY A E+ ++ +F + G V++ K+V DR T + K YGF
Sbjct: 5 KEKEEQSIMDKSMRSVFVGNIPYEATEEKLKDIFSEVGPVLSFKLVFDRETGKPKGYGFC 64
Query: 86 TFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NG I GR +RV T
Sbjct: 65 EYKDQETALSAMRNLNGYEIGGRSLRVDNACT 96
>gi|56699409|ref|NP_002130.2| RNA-binding motif protein, X chromosome isoform 1 [Homo sapiens]
gi|206725512|ref|NP_001128678.1| RNA-binding motif protein, X chromosome [Pan troglodytes]
gi|74008547|ref|XP_866434.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G isoform 6
[Canis lupus familiaris]
gi|149755726|ref|XP_001489601.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G [Equus
caballus]
gi|397482297|ref|XP_003812367.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Pan
paniscus]
gi|410989483|ref|XP_004000991.1| PREDICTED: RNA-binding motif protein, X chromosome [Felis catus]
gi|23503093|sp|P38159.3|RBMX_HUMAN RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Glycoprotein p43; AltName: Full=Heterogeneous
nuclear ribonucleoprotein G; Short=hnRNP G; Contains:
RecName: Full=RNA-binding motif protein, X chromosome,
N-terminally processed
gi|160395526|sp|A5A6M3.1|RBMX_PANTR RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|13938569|gb|AAH07435.1| RNA binding motif protein, X-linked [Homo sapiens]
gi|14279350|gb|AAK58567.1| RBMX [Homo sapiens]
gi|16306856|gb|AAH06550.1| RNA binding motif protein, X-linked [Homo sapiens]
gi|39545947|gb|AAR28036.1| heterogeneous nuclear ribonucleoprotein G [Homo sapiens]
gi|119608859|gb|EAW88453.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|119608860|gb|EAW88454.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|119608861|gb|EAW88455.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|119608863|gb|EAW88457.1| RNA binding motif protein, X-linked, isoform CRA_a [Homo sapiens]
gi|123993071|gb|ABM84137.1| RNA binding motif protein, X-linked [synthetic construct]
gi|124000061|gb|ABM87539.1| RNA binding motif protein, X-linked [synthetic construct]
gi|146741480|dbj|BAF62396.1| RNA binding motif protein, X-linked [Pan troglodytes verus]
gi|410266422|gb|JAA21177.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266426|gb|JAA21179.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266428|gb|JAA21180.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266430|gb|JAA21181.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266432|gb|JAA21182.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266434|gb|JAA21183.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410266436|gb|JAA21184.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348962|gb|JAA41085.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348964|gb|JAA41086.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348966|gb|JAA41087.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348968|gb|JAA41088.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348970|gb|JAA41089.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348972|gb|JAA41090.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348974|gb|JAA41091.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
gi|410348976|gb|JAA41092.1| RNA binding motif protein, X-linked-like 1 [Pan troglodytes]
Length = 391
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|32476441|ref|NP_869435.1| RNA-binding protein [Rhodopirellula baltica SH 1]
gi|32446986|emb|CAD78892.1| RNA-binding protein [Rhodopirellula baltica SH 1]
Length = 206
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+++YVG L + A E+ +R F++YG V AV I+ DR T R + + FV + A DAI
Sbjct: 66 TNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIE 125
Query: 99 DMNGRTIDGRVVRVSEVATR 118
++NG IDGR V V+E R
Sbjct: 126 NLNGHEIDGRSVTVNEARPR 145
>gi|343959058|dbj|BAK63384.1| heterogeneous nuclear ribonucleoprotein G [Pan troglodytes]
Length = 391
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|355757746|gb|EHH61271.1| hypothetical protein EGM_19240 [Macaca fascicularis]
Length = 391
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|301788792|ref|XP_002929813.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Ailuropoda melanoleuca]
Length = 552
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|167383625|ref|XP_001736605.1| cold-inducible RNA-binding protein [Entamoeba dispar SAW760]
gi|165900936|gb|EDR27150.1| cold-inducible RNA-binding protein, putative [Entamoeba dispar
SAW760]
Length = 138
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
+Y+G L YS ++S+R F+K+G+V K+V DR S R K +GFVTF A AI +M
Sbjct: 4 LYIGSLAYSVTDESLRAAFEKFGTVTDCKVVTDRESQRSKGFGFVTFEKDEDAKKAIEEM 63
Query: 101 NGRTIDGRVVRV 112
N + ++GR ++V
Sbjct: 64 NEQELEGRRIKV 75
>gi|152990027|ref|YP_001355749.1| RNA-binding protein RNP-1 [Nitratiruptor sp. SB155-2]
gi|151421888|dbj|BAF69392.1| RNA-binding protein RNP-1 [Nitratiruptor sp. SB155-2]
Length = 89
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 51/75 (68%), Gaps = 2/75 (2%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG LPYS+NE+ VR++F +YG V +VK++NDR T R + +GFV + SA AI +
Sbjct: 4 IYVGNLPYSSNEEDVRELFAQYGEVTSVKLINDRETGRPRGFGFVEM-DDSSADSAIEAL 62
Query: 101 NGRTIDGRVVRVSEV 115
+G GR ++V+E
Sbjct: 63 DGSEFGGRSLKVNEA 77
>gi|67483728|ref|XP_657084.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|56474323|gb|EAL51698.1| RNA recognition motif domain containing protein [Entamoeba
histolytica HM-1:IMSS]
gi|449705266|gb|EMD45349.1| RNA recognition motif domain containing protein [Entamoeba
histolytica KU27]
Length = 136
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
+Y+G L YS ++S++ F+K+G+V K+V DR S R K +GFVTF A AI +M
Sbjct: 4 LYIGSLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEM 63
Query: 101 NGRTIDGRVVRV 112
N + ++GR ++V
Sbjct: 64 NEQELEGRRIKV 75
>gi|387018118|gb|AFJ51177.1| Heterogeneous nuclear ribonucleoprotein G-like [Crotalus
adamanteus]
Length = 384
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D ++VGGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFVGGLNIETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKSIKV-EQATK 86
>gi|402911572|ref|XP_003918396.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Papio
anubis]
gi|75076694|sp|Q4R7F0.1|RBMX_MACFA RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|67969238|dbj|BAE00972.1| unnamed protein product [Macaca fascicularis]
gi|380813174|gb|AFE78461.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813176|gb|AFE78462.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813178|gb|AFE78463.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813180|gb|AFE78464.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|380813182|gb|AFE78465.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383411873|gb|AFH29150.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418689|gb|AFH32558.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418691|gb|AFH32559.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418693|gb|AFH32560.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418695|gb|AFH32561.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418697|gb|AFH32562.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|383418699|gb|AFH32563.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947302|gb|AFI37256.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947304|gb|AFI37257.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947306|gb|AFI37258.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947308|gb|AFI37259.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947310|gb|AFI37260.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947312|gb|AFI37261.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
gi|384947314|gb|AFI37262.1| heterogeneous nuclear ribonucleoprotein G isoform 1 [Macaca
mulatta]
Length = 391
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|417410380|gb|JAA51664.1| Putative cyclophilin-type peptidyl-prolyl cis-trans isomerase,
partial [Desmodus rotundus]
Length = 398
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 5 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 64
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 65 DAARDMNGKSLDGKAIKV-EQATK 87
>gi|426223062|ref|XP_004005698.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Ovis aries]
Length = 607
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|88682979|gb|AAI05553.1| CSTF2 protein [Bos taurus]
Length = 632
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|298248970|ref|ZP_06972774.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297546974|gb|EFH80841.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 104
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 60/109 (55%), Gaps = 8/109 (7%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVGGLPY + E + ++F++ G V + ++ DR T R K +GFV + AI +
Sbjct: 3 IYVGGLPYQSTEQDLIQLFEQIGQVTSATVITDRETGRSKGFGFVEMSSDDETRAAIEQL 62
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRY 149
NG T+ R + V+E R R++ G G++ +GR + +RDRY
Sbjct: 63 NGSTLGDRTITVNEA--RERRAPGG-----GGYQSRGRSSNGGGYRDRY 104
>gi|20257701|gb|AAM16016.1| glycine-rich RNA binding protein [Zea mays]
Length = 154
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 25 FNLIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCY 82
F + ER +M D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +
Sbjct: 1 FWFVGEREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGF 60
Query: 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
GFVTF AI MNG+ +DGR + V+E
Sbjct: 61 GFVTFSXXXXXRSAIEGMNGKELDGRNITVNEA 93
>gi|2226370|gb|AAC50020.1| RNA-binding protein [Nicotiana glutinosa]
Length = 156
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ + ++ F +YG ++ KI+NDR T R + +GFVTF + ++ DAI
Sbjct: 5 EYRCFVGGLAWATTDQTLGDAFSQYGEILDSKIINDRETGRSRGFGFVTFKDEQAMRDAI 64
Query: 98 NDMNGRTIDGRVVRVSEV 115
MNG+ +DGR + V+E
Sbjct: 65 EGMNGQDLDGRNITVNEA 82
>gi|350401751|ref|XP_003486249.1| PREDICTED: cleavage stimulation factor subunit 2-like [Bombus
impatiens]
Length = 441
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 35 TIDDES-------SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
TI D+S SV+VG +PY A E++++ +F + G V++ K+V DR T + K YGF
Sbjct: 5 TISDQSLMDKSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCE 64
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NG I GR +RV T
Sbjct: 65 YKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|307202383|gb|EFN81811.1| Cleavage stimulation factor 64 kDa subunit [Harpegnathos saltator]
Length = 439
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 35 TIDDES-------SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
TI D+S SV+VG +PY A E++++ +F + G V++ K+V DR T + K YGF
Sbjct: 5 TISDQSLMDKSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCE 64
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NG I GR +RV T
Sbjct: 65 YKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|242083506|ref|XP_002442178.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
gi|241942871|gb|EES16016.1| hypothetical protein SORBIDRAFT_08g015580 [Sorghum bicolor]
Length = 250
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
S ++VGGL Y ++ S+R F KYG V+ +I+ DR S R + +GFVT+ + A AI
Sbjct: 30 SKLFVGGLSYGTDDHSLRDEFAKYGEVIEARIILDRESGRSRGFGFVTYTSSEEASAAIT 89
Query: 99 DMNGRTIDGRVVRV 112
M+G+T+DGR +RV
Sbjct: 90 AMDGKTLDGRSIRV 103
>gi|410043862|ref|XP_003951699.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant [Pan
troglodytes]
Length = 576
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|444517993|gb|ELV11894.1| RNA-binding motif protein, X-linked 2, partial [Tupaia chinensis]
Length = 323
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG VV
Sbjct: 2 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEVVN 61
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 62 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 110
>gi|20072518|gb|AAH26995.1| Cstf2t protein [Mus musculus]
Length = 637
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|469070|dbj|BAA03741.1| RNA-binding glycine-rich protein-1a [Nicotiana sylvestris]
gi|295393563|gb|ADG03637.1| RNA-binding glycine-rich protein [Nicotiana tabacum]
Length = 156
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ + ++ + F ++G ++ KI+NDR T R + +GFVTF + ++ DAI
Sbjct: 5 EYRCFVGGLAWATTDQTLGEAFSQFGEILDSKIINDRETGRSRGFGFVTFKDEKAMRDAI 64
Query: 98 NDMNGRTIDGRVVRVSEV 115
MNG+ +DGR + V+E
Sbjct: 65 EGMNGQDLDGRNITVNEA 82
>gi|406831764|ref|ZP_11091358.1| RNP-1 like RNA-binding protein [Schlesneria paludicola DSM 18645]
Length = 122
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+ +YVG L Y+A ++ ++F ++G V + +IV DR T R K +GFV G+ RSA AI+
Sbjct: 3 TKLYVGNLSYNATNQTLEQMFAQHGEVRSAQIVTDRDTGRSKGFGFVEMGDSRSAEAAIS 62
Query: 99 DMNGRTIDGRVVRVSEVATR 118
+NG+ +DGR + V+E R
Sbjct: 63 ALNGQEVDGRALTVNEARPR 82
>gi|440714448|ref|ZP_20895027.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
gi|436440644|gb|ELP33948.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SWK14]
Length = 196
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+++YVG L + A E+ +R F++YG V AV I+ DR T R + + FV + A DAI
Sbjct: 55 TNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIE 114
Query: 99 DMNGRTIDGRVVRVSEVATR 118
++NG IDGR V V+E R
Sbjct: 115 NLNGHEIDGRSVTVNEARPR 134
>gi|421614043|ref|ZP_16055112.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
gi|408495250|gb|EKJ99839.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula baltica SH28]
Length = 189
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+++YVG L + A E+ +R F++YG V AV I+ DR T R + + FV + A DAI
Sbjct: 55 TNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIE 114
Query: 99 DMNGRTIDGRVVRVSEVATR 118
++NG IDGR V V+E R
Sbjct: 115 NLNGHEIDGRSVTVNEARPR 134
>gi|417304381|ref|ZP_12091404.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|449136828|ref|ZP_21772190.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
gi|327539333|gb|EGF25954.1| protein containing RNA recognition motif, RNP-1 domains
[Rhodopirellula baltica WH47]
gi|448884533|gb|EMB15023.1| protein containing RNA recognition motif, RNP-1 domain protein
[Rhodopirellula europaea 6C]
Length = 195
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+++YVG L + A E+ +R F++YG V AV I+ DR T R + + FV + A DAI
Sbjct: 55 TNIYVGNLSFKATEEELRGAFEQYGEVSAVNIIMDRETGRSRGFAFVEMADAEGAKDAIE 114
Query: 99 DMNGRTIDGRVVRVSEVATR 118
++NG IDGR V V+E R
Sbjct: 115 NLNGHEIDGRSVTVNEARPR 134
>gi|157821159|ref|NP_001101056.1| cleavage stimulation factor subunit 2 tau variant [Rattus
norvegicus]
gi|149062701|gb|EDM13124.1| rCG47773 [Rattus norvegicus]
Length = 629
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|351715564|gb|EHB18483.1| Cleavage stimulation factor 64 kDa subunit, tau variant
[Heterocephalus glaber]
Length = 642
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|302809382|ref|XP_002986384.1| hypothetical protein SELMODRAFT_49298 [Selaginella moellendorffii]
gi|300145920|gb|EFJ12593.1| hypothetical protein SELMODRAFT_49298 [Selaginella moellendorffii]
Length = 145
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ + ++ F YG+V+ K+V DR T R + +GFVTFG+ S DAI
Sbjct: 1 EFRCFVGGLSWATTDRNLEDAFSPYGTVIEAKVVLDRDTERSRGFGFVTFGDENSMQDAI 60
Query: 98 NDMNGRTIDGRVVRVSEV 115
+ M+G+ +DGR + VS+
Sbjct: 61 DGMHGKDLDGRSITVSKA 78
>gi|336088638|ref|NP_001229511.1| cleavage stimulation factor subunit 2 tau variant [Bos taurus]
gi|296472872|tpg|DAA14987.1| TPA: CSTF2 protein-like [Bos taurus]
Length = 642
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|148277061|ref|NP_112539.2| cleavage stimulation factor subunit 2 tau variant [Mus musculus]
gi|71153235|sp|Q8C7E9.2|CSTFT_MOUSE RecName: Full=Cleavage stimulation factor subunit 2 tau variant;
AltName: Full=CF-1 64 kDa subunit tau variant; AltName:
Full=Cleavage stimulation factor 64 kDa subunit tau
variant; Short=CSTF 64 kDa subunit tau variant; AltName:
Full=TauCstF-64
gi|26330250|dbj|BAC28855.1| unnamed protein product [Mus musculus]
gi|26350087|dbj|BAC38683.1| unnamed protein product [Mus musculus]
Length = 632
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|26341156|dbj|BAC34240.1| unnamed protein product [Mus musculus]
Length = 632
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|297733872|emb|CBI15119.3| unnamed protein product [Vitis vinifera]
Length = 163
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GGL YS ++ S+R+ F KYG V+ +++ DR T R + +GFVTF + A AI
Sbjct: 40 SKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQ 99
Query: 99 DMNGRTIDGRVVRVSEVATRGR 120
++G+ + GR VRV+ R R
Sbjct: 100 ALDGQDLHGRRVRVNYATDRAR 121
>gi|224114367|ref|XP_002332380.1| predicted protein [Populus trichocarpa]
gi|222832204|gb|EEE70681.1| predicted protein [Populus trichocarpa]
Length = 52
Score = 65.9 bits (159), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/40 (65%), Positives = 38/40 (95%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVN 73
MTIDD+ S+Y+GGLPY+A+ED++R+VF+ YGS+VAVK++N
Sbjct: 1 MTIDDDRSIYIGGLPYNASEDTLRRVFNLYGSIVAVKVIN 40
>gi|432093575|gb|ELK25559.1| RNA-binding motif protein, X-linked 2 [Myotis davidii]
Length = 337
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVADTVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|291400895|ref|XP_002716702.1| PREDICTED: RNA binding motif protein, X-linked 2 [Oryctolagus
cuniculus]
Length = 198
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + V+VGGLPY E + VF +YG +V + +V D+ T + + +GF+ + + RS V A
Sbjct: 33 DSAWVFVGGLPYELTEGDILCVFSQYGEIVNIHLVRDKKTGKSRGFGFICYEDQRSTVLA 92
Query: 97 INDMNGRTIDGRVVRV 112
+++ NG I GR +RV
Sbjct: 93 VDNFNGIKIKGRTIRV 108
>gi|119928238|ref|XP_001254975.1| PREDICTED: scaffold attachment factor B1, partial [Bos taurus]
Length = 741
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 407 WVSGLSSTTRAADLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTVEEATKCINHLH 466
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYND 155
+ G+++ V +V G+K++ R+ R + DR N R+ DR +D
Sbjct: 467 KTELHGKMISVEKVINEPAGKKTSERREGERKKEKSSSADRSANLKREEKADRKDD 522
>gi|426252729|ref|XP_004020055.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 4 [Ovis aries]
Length = 646
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|343887401|ref|NP_001230600.1| RNA binding motif protein, X-linked 2 [Sus scrofa]
Length = 329
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTI----------DDESSVYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D + +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS V A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVS 113
>gi|197246895|gb|AAI69065.1| Cleavage stimulation factor, 3' pre-RNA subunit 2, tau [Rattus
norvegicus]
Length = 629
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|90704785|dbj|BAE92287.1| putative glycine-rich RNA binding protein [Cryptomeria japonica]
Length = 181
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSA 93
+ D E +VGGL +S ++ S++ F +G V+ K+V+DR T R + +GFVTF + +S
Sbjct: 3 SADVEFRCFVGGLSWSTDDRSLKDAFTAFGEVMDSKVVSDRETGRSRGFGFVTFMDEQSM 62
Query: 94 VDAINDMNGRTIDGRVVRV 112
DAI MNGR +DGR + V
Sbjct: 63 RDAIEGMNGRDLDGRNITV 81
>gi|90265701|dbj|BAE91897.1| glycine-rich RNA-binding protein [Lolium perenne]
Length = 107
Score = 65.9 bits (159), Expect = 3e-08, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E +VGGL ++ N+ S+ + F ++G + KI+NDR T R + +GFVTF + S +A
Sbjct: 3 EEYRCFVGGLAWATNDQSLEQAFSQFGEITDCKIINDRETGRSRGFGFVTFSSSESMKNA 62
Query: 97 INDMNGRTIDGRVVRVSE 114
I MNG+ +DGR + V+E
Sbjct: 63 IEGMNGQDLDGRNITVNE 80
>gi|426252727|ref|XP_004020054.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 3 [Ovis aries]
Length = 623
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|27734072|ref|NP_775552.1| RNA-binding motif protein, X-linked 2 [Mus musculus]
gi|61230302|sp|Q8R0F5.1|RBMX2_MOUSE RecName: Full=RNA-binding motif protein, X-linked 2
gi|20071694|gb|AAH26976.1| RNA binding motif protein, X-linked 2 [Mus musculus]
gi|26345092|dbj|BAC36195.1| unnamed protein product [Mus musculus]
gi|74207503|dbj|BAE40004.1| unnamed protein product [Mus musculus]
Length = 326
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + ++ S ++VGGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS V A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVS 113
>gi|426252725|ref|XP_004020053.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 2 [Ovis aries]
Length = 612
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|74006873|ref|XP_863171.1| PREDICTED: uncharacterized protein LOC609457 isoform 2 [Canis lupus
familiaris]
Length = 162
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF +P A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|297458528|ref|XP_604198.5| PREDICTED: scaffold attachment factor B1-like [Bos taurus]
Length = 842
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 409 WVSGLSSTTRAADLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTVEEATKCINHLH 468
Query: 102 GRTIDGRVVRVSEV--ATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYND 155
+ G+++ V +V G+K++ R+ R + DR N R+ DR +D
Sbjct: 469 KTELHGKMISVEKVINEPAGKKTSERREGERKKEKSSSADRSANLKREEKADRKDD 524
>gi|4379044|emb|CAA53660.1| YRRM2 [Homo sapiens]
Length = 419
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHAGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG ++ G+ ++V +
Sbjct: 64 AAKDMNGTSLHGKAIKVEQA 83
>gi|327279532|ref|XP_003224510.1| PREDICTED: putative RNA-binding protein 3-like isoform 1 [Anolis
carolinensis]
Length = 152
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL + +E + + F +G + V ++ D+ T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFDTDEQGLEQHFSSFGPISEVVVIKDKETQRSRGFGFITFANPEHASDA 63
Query: 97 INDMNGRTIDGRVVRV 112
+ MNG ++DGR +RV
Sbjct: 64 MRAMNGESVDGRQIRV 79
>gi|344276873|ref|XP_003410230.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Loxodonta
africana]
Length = 303
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D S +++GGLPY E + VF +YG +V + +V +R T + K + F+ + + RS V A
Sbjct: 34 DSSWIFLGGLPYELTEGDILCVFSQYGEIVNINLVRNRKTGKSKGFCFICYEDQRSTVLA 93
Query: 97 INDMNGRTIDGRVVRVSEVAT 117
+++ NG I GR +RV V++
Sbjct: 94 VDNFNGIKIKGRTIRVDHVSS 114
>gi|148709763|gb|EDL41709.1| cleavage stimulation factor, 3' pre-RNA subunit 2, tau [Mus
musculus]
Length = 644
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 29 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 88
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 89 LNGREFSGRALRVDNAAS 106
>gi|344275007|ref|XP_003409305.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
[Loxodonta africana]
Length = 609
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|449441097|ref|XP_004138320.1| PREDICTED: uncharacterized protein LOC101218446 [Cucumis sativus]
Length = 232
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 8 RQGVSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV 67
RQG + I + + R +L + M+ + S V+VGG+ +S ++ S+R+ F KYG V+
Sbjct: 12 RQGANKRIGLDLH-RSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLREAFTKYGEVI 70
Query: 68 AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGR 120
+++ DR T R + +GFVT+ + A AI ++G+ + GR VRV+ R R
Sbjct: 71 EARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYANDRAR 124
>gi|395860828|ref|XP_003802706.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Otolemur
garnettii]
Length = 391
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + F+TF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFITFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|403256025|ref|XP_003920702.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Saimiri
boliviensis boliviensis]
Length = 391
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|383860217|ref|XP_003705587.1| PREDICTED: cleavage stimulation factor subunit 2-like [Megachile
rotundata]
Length = 441
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 55/91 (60%), Gaps = 8/91 (8%)
Query: 35 TIDDES-------SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
TI D+S SV+VG +PY A E++++ +F + G V++ K+V DR T + K YGF
Sbjct: 5 TISDQSLMDKSMRSVFVGNIPYEATEENLKDIFSEVGPVLSFKLVFDRETGKPKGYGFCE 64
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NG I GR +RV T
Sbjct: 65 YKDQETALSAMRNLNGYEIGGRTLRVDNACT 95
>gi|449477140|ref|XP_004154942.1| PREDICTED: uncharacterized LOC101218446 [Cucumis sativus]
Length = 287
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 2/114 (1%)
Query: 8 RQGVSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV 67
RQG + I + + R +L + M+ + S V+VGG+ +S ++ S+R+ F KYG V+
Sbjct: 12 RQGANKRIGLDLH-RSSLSLSQAVRWMSSMESSKVFVGGISFSTDDQSLREAFTKYGEVI 70
Query: 68 AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGR 120
+++ DR T R + +GFVT+ + A AI ++G+ + GR VRV+ R R
Sbjct: 71 EARVIVDRETGRSRGFGFVTYTSSEEASSAIQALDGQDLHGRRVRVNYANDRAR 124
>gi|50510589|dbj|BAD32280.1| mKIAA0689 protein [Mus musculus]
Length = 643
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 28 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 87
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 88 LNGREFSGRALRVDNAAS 105
>gi|330864692|ref|NP_001193477.1| RNA-binding motif protein, X-linked 2-like [Bos taurus]
Length = 330
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTID----------DESSVYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D + +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVPEKVSWHNEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS V A+++ NG I GR +RV V+
Sbjct: 65 INLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVS 113
>gi|226088567|dbj|BAH37028.1| RNA binding motif protein [Tokudaia osimensis]
Length = 279
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 2/77 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A DA DMN
Sbjct: 1 FIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMN 60
Query: 102 GRTIDGRVVRVSEVATR 118
G+++DG+ ++V E AT+
Sbjct: 61 GKSLDGKAIKV-EQATK 76
>gi|391347243|ref|XP_003747874.1| PREDICTED: cleavage stimulation factor subunit 2-like [Metaseiulus
occidentalis]
Length = 422
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query: 25 FNLIEERVKMTIDDES--SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKC 81
N ++ V +++ ++S SV+VG +PY A E+ ++ +F++ G VV ++V DR T + K
Sbjct: 1 MNTLQRNVDVSVAEKSACSVFVGNIPYDATEEQLKTIFEEVGPVVNFRLVYDRETGKPKG 60
Query: 82 YGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
YGF F + +A+ A+ ++N I GR +RV A+
Sbjct: 61 YGFCEFKDQETAMSAMRNLNSFEIGGRALRVDHAAS 96
>gi|359067156|ref|XP_002688961.2| PREDICTED: scaffold attachment factor B1 [Bos taurus]
Length = 840
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 407 WVSGLSSTTRAADLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTVEEATKCINHLH 466
Query: 102 GRTIDGRVVRVSEV--ATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYND 155
+ G+++ V +V G+K++ R+ R + DR N R+ DR +D
Sbjct: 467 KTELHGKMISVEKVINEPAGKKTSERREGERKKEKSSSADRSANLKREEKADRKDD 522
>gi|374314656|ref|YP_005061084.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
gi|359350300|gb|AEV28074.1| RRM domain-containing RNA-binding protein [Sphaerochaeta pleomorpha
str. Grapes]
Length = 92
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG + Y+ ED +R++F +YG+V++ I+ DR T R K +GFV +A AI+ +
Sbjct: 5 IYVGNMSYNTTEDDLRELFSQYGNVLSATIIMDRETRRPKGFGFVEMEENSAADAAISQL 64
Query: 101 NGRTIDGRVVRVSEVATRGR 120
+G+ IDGR +RV+E + R
Sbjct: 65 DGKEIDGRNLRVNEAIAKPR 84
>gi|395509895|ref|XP_003759222.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Sarcophilus
harrisii]
Length = 274
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGLPY E V VF +YG +V + +V D+ T + K + F+ + + RS V A
Sbjct: 34 DSAWIFIGGLPYELTEGDVICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLA 93
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+++ NG I GR +RV VA
Sbjct: 94 VDNFNGIKIRGRTIRVDHVA 113
>gi|281351269|gb|EFB26853.1| hypothetical protein PANDA_007127 [Ailuropoda melanoleuca]
Length = 334
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 14 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 73
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 74 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 122
>gi|261205092|ref|XP_002627283.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis
SLH14081]
gi|239592342|gb|EEQ74923.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis
SLH14081]
Length = 143
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S ++VGGL + ++++R F+KYG++ +V DR T R + +GFV F + A A+N
Sbjct: 2 SKLFVGGLAWHTTDETLRVGFEKYGTIEEATVVKDRDTNRSRGFGFVRFASDTEADTAMN 61
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
MN + DGRV+RV + + R + N G
Sbjct: 62 AMNNQEFDGRVIRVDKASDRSTQRNDG 88
>gi|397576490|gb|EJK50286.1| hypothetical protein THAOC_30767 [Thalassiosira oceanica]
Length = 397
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 4/121 (3%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
+R E+ +YVG L + E ++R++F +YGSV+ I DR T + + + FVT G
Sbjct: 275 QRPAAAAPKETKLYVGNLSWGTEEGALRELFGEYGSVIDCYIPTDRETGQHRGFAFVTMG 334
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDR 148
P A+ A ++ +G +DGR++RV+E +G+++N + + G + G D ++ D
Sbjct: 335 -PDDALRAADETDGYELDGRILRVNEAQPKGQRNN--YNSYNDGGNYDGDDAWDSSEDDS 391
Query: 149 Y 149
+
Sbjct: 392 W 392
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
D+ + +YVG L + + ++ F+++G V+ + D + +GF+ + S + A
Sbjct: 193 DEGAKIYVGNLNFDTTAEDLKAAFEEFGDVMDCFLPVDYDGNARGFGFIQMSDEDS-LKA 251
Query: 97 INDMNGRTIDGRVVRVSEVATRGRK 121
I MNG DGR + V++ +G++
Sbjct: 252 IEGMNGVEFDGRTLNVNKSLPKGQR 276
>gi|326490373|dbj|BAJ84850.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 299
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
S V+VGG+ Y ++ S+ F YG V K++ DR S R + +GFVTF + A AI
Sbjct: 31 SKVFVGGISYGTDDQSLGDAFSNYGQVTEAKVIMDRESGRSRGFGFVTFTSSEEAGAAIT 90
Query: 99 DMNGRTIDGRVVRVSEVATRGRK 121
M+G+ + GR+VRVS RG +
Sbjct: 91 GMDGKDLQGRIVRVSYAHDRGSR 113
>gi|301766430|ref|XP_002918652.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Ailuropoda
melanoleuca]
Length = 325
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|395820735|ref|XP_003783716.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
[Otolemur garnettii]
Length = 601
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|395835423|ref|XP_003790679.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Otolemur
garnettii]
Length = 331
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|332212188|ref|XP_003255200.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
[Nomascus leucogenys]
Length = 622
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|449507320|ref|XP_004162998.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 139
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + +S+ K F YG +V KIV+DR T R + +GFVTF + AI MN
Sbjct: 11 FVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMN 70
Query: 102 GRTIDGRVVRVSE 114
G +DGR + V+E
Sbjct: 71 GHILDGRNITVNE 83
>gi|449462238|ref|XP_004148848.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507318|ref|XP_004162997.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 141
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + +S+ K F YG +V KIV+DR T R + +GFVTF + AI MN
Sbjct: 11 FVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMN 70
Query: 102 GRTIDGRVVRVSE 114
G +DGR + V+E
Sbjct: 71 GHILDGRNITVNE 83
>gi|449462236|ref|XP_004148847.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507315|ref|XP_004162996.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 144
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + +S+ K F YG +V KIV+DR T R + +GFVTF + AI MN
Sbjct: 11 FVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMN 70
Query: 102 GRTIDGRVVRVSE 114
G +DGR + V+E
Sbjct: 71 GHILDGRNITVNE 83
>gi|449462234|ref|XP_004148846.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 156
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + +S+ K F YG +V KIV+DR T R + +GFVTF + AI MN
Sbjct: 11 FVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMN 70
Query: 102 GRTIDGRVVRVSE 114
G +DGR + V+E
Sbjct: 71 GHILDGRNITVNE 83
>gi|449462232|ref|XP_004148845.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
gi|449507311|ref|XP_004162995.1| PREDICTED: glycine-rich RNA-binding protein blt801-like [Cucumis
sativus]
Length = 171
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + +S+ K F YG +V KIV+DR T R + +GFVTF + AI MN
Sbjct: 11 FVGGLAWATDSNSLEKAFSVYGEIVEAKIVSDRETGRSRGFGFVTFLEEEAMRSAIEAMN 70
Query: 102 GRTIDGRVVRVSE 114
G +DGR + V+E
Sbjct: 71 GHILDGRNITVNE 83
>gi|26351239|dbj|BAC39256.1| unnamed protein product [Mus musculus]
Length = 642
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|296485799|tpg|DAA27914.1| TPA: scaffold attachment factor B-like [Bos taurus]
Length = 813
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 407 WVSGLSSTTRAADLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTVEEATKCINHLH 466
Query: 102 GRTIDGRVVRVSEV--ATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYND 155
+ G+++ V +V G+K++ R+ R + DR N R+ DR +D
Sbjct: 467 KTELHGKMISVEKVINEPAGKKTSERREGERKKEKSSSADRSANLKREEKADRKDD 522
>gi|291408201|ref|XP_002720429.1| PREDICTED: CG10466-like [Oryctolagus cuniculus]
Length = 431
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGLPY E V VF +YG VV + +V D+ T + K + F+ + + RS + A
Sbjct: 136 DSAWIFLGGLPYELTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTILA 195
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+++ NG I GR +RV VA
Sbjct: 196 VDNFNGIKIKGRTIRVDHVA 215
>gi|126325323|ref|XP_001367196.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Monodelphis domestica]
Length = 388
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
D ++VGGL NE ++ VF KYG +V V ++ DR TR + + F+TF +P A
Sbjct: 4 ADRPGKLFVGGLNIETNEKALEAVFGKYGRIVEVLLMKDRETRKSRGFAFITFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+ +DG+ ++V E AT+
Sbjct: 64 DAARDMNGKLLDGKSIKV-EQATK 86
>gi|296470918|tpg|DAA13033.1| TPA: RNA binding motif protein, X-linked 2-like protein [Bos
taurus]
Length = 417
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTID----------DESSVYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D + +++GGLPY E + VF +YG +V
Sbjct: 92 TKVKLINELNEREVQLGVPEKVSWHNEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 151
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS V A+++ NG I GR +RV V+
Sbjct: 152 INLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVS 200
>gi|194205912|ref|XP_001917732.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Equus caballus]
Length = 619
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|83699420|ref|NP_033059.2| RNA binding motif protein, X-linked-like-1 [Mus musculus]
gi|355390287|ref|NP_001239018.1| RNA binding motif protein, X-linked-like-1 [Mus musculus]
gi|81916088|sp|Q91VM5.1|RMXL1_MOUSE RecName: Full=RNA binding motif protein, X-linked-like-1; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G-like 1;
AltName: Full=RNA binding motif protein, X chromosome
retrogene; Contains: RecName: Full=RNA binding motif
protein, X-linked-like-1, N-terminally processed
gi|15030328|gb|AAH11441.1| Rbmxrt protein [Mus musculus]
gi|26334797|dbj|BAC31099.1| unnamed protein product [Mus musculus]
gi|58476937|gb|AAH89350.1| RNA binding motif protein, X chromosome retrogene [Mus musculus]
Length = 388
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V + ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|431839028|gb|ELK00957.1| Cleavage stimulation factor 64 kDa subunit, tau variant [Pteropus
alecto]
Length = 601
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|126342916|ref|XP_001364467.1| PREDICTED: cleavage stimulation factor subunit 2-like [Monodelphis
domestica]
Length = 551
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|148678911|gb|EDL10858.1| mCG7984 [Mus musculus]
Length = 388
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V + ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|291404363|ref|XP_002718535.1| PREDICTED: cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Oryctolagus cuniculus]
Length = 601
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|242037549|ref|XP_002466169.1| hypothetical protein SORBIDRAFT_01g002770 [Sorghum bicolor]
gi|241920023|gb|EER93167.1| hypothetical protein SORBIDRAFT_01g002770 [Sorghum bicolor]
Length = 298
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VYVGG+P+ E + +F +YG VV V +V D+ T + K + F+ + + RS + A
Sbjct: 34 DSAYVYVGGVPFDLTEGDLLAIFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILA 93
Query: 97 INDMNGRTIDGRVVRVSEVA 116
++++NG + GR++RV V+
Sbjct: 94 VDNLNGAKVLGRIIRVDHVS 113
>gi|239611503|gb|EEQ88490.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis ER-3]
gi|327348484|gb|EGE77341.1| glycine-rich RNA-binding protein [Ajellomyces dermatitidis ATCC
18188]
Length = 143
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S ++VGGL + ++++R F+KYG++ +V DR T R + +GFV F + A A+N
Sbjct: 2 SKLFVGGLAWHTTDETLRVGFEKYGTIEEATVVKDRDTNRSRGFGFVRFASDTEADTAMN 61
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
MN + DGRV+RV + + R + N G
Sbjct: 62 AMNNQEFDGRVIRVDKASDRSTQRNDG 88
>gi|308806371|ref|XP_003080497.1| Cyclophilin-type peptidyl-prolyl cis-trans isomerase (ISS)
[Ostreococcus tauri]
gi|116058957|emb|CAL54664.1| Cyclophilin-type peptidyl-prolyl cis-trans isomerase (ISS)
[Ostreococcus tauri]
Length = 252
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
VY GGLP++ E V VF ++G +V V +V + T + + + FV + + RS V A++++
Sbjct: 38 VYAGGLPFALTEGDVLCVFSQFGEIVDVNVVREEETGKSRGFAFVCYADQRSTVLAVDNL 97
Query: 101 NGRTIDGRVVRVSEV 115
NG T+ GR++RV V
Sbjct: 98 NGSTVGGRIIRVEHV 112
>gi|354477196|ref|XP_003500808.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Cricetulus griseus]
gi|344244124|gb|EGW00228.1| Heterogeneous nuclear ribonucleoprotein G [Cricetulus griseus]
Length = 388
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V + ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|348552954|ref|XP_003462292.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Cavia
porcellus]
Length = 388
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 12/124 (9%)
Query: 5 EGGRQGVSTSIVVPI-KARVIFNLIEERVKMTI----------DDESSVYVGGLPYSANE 53
E R+ + + + P+ K ++I L E V++ + D + +++GGLPY E
Sbjct: 42 EAERRTRTCAKMNPLTKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTE 101
Query: 54 DSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112
V VF +YG +V + +V D+ T + K + F+ + + RS + A+++ NG I GR +RV
Sbjct: 102 GDVICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRV 161
Query: 113 SEVA 116
V+
Sbjct: 162 DHVS 165
>gi|150024447|ref|YP_001295273.1| RNA-binding protein RbpA [Flavobacterium psychrophilum JIP02/86]
gi|149770988|emb|CAL42455.1| Putative RNA-binding protein RbpA [Flavobacterium psychrophilum
JIP02/86]
Length = 133
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
+++VG LP+S E +R+ F+ YG+V +VKI+ D+ T R K +GFV N AI++
Sbjct: 2 NIFVGSLPWSIEEADLRESFEAYGAVESVKIITDKFTGRSKGFGFVEMPNDEEGQKAIDE 61
Query: 100 MNGRTIDGRVVRVS 113
+NG T+DGR + V+
Sbjct: 62 LNGATVDGRAIVVN 75
>gi|402911397|ref|XP_003919621.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked
2 [Papio anubis]
Length = 322
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|388453455|ref|NP_001253777.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
gi|380813648|gb|AFE78698.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
gi|383419077|gb|AFH32752.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
gi|384947606|gb|AFI37408.1| RNA-binding motif protein, X-linked 2 [Macaca mulatta]
Length = 322
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|312283439|dbj|BAJ34585.1| unnamed protein product [Thellungiella halophila]
Length = 259
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 3/96 (3%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ D E ++GGL +S ++ +R F+KYG ++ K+V D+ S R + +GF+TF ++
Sbjct: 1 MSEDPEYRCFIGGLAWSTSDRGLRDAFEKYGHLLEAKVVLDKFSGRSRGFGFITFDEKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQ 128
+AI MNG +DGR + V + + SGRD
Sbjct: 61 MDEAIAAMNGMDLDGRTITVDKAQP--HQGGSGRDH 94
>gi|348576422|ref|XP_003473986.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Cavia porcellus]
Length = 630
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|121595278|ref|YP_987174.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|222111562|ref|YP_002553826.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|120607358|gb|ABM43098.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|221731006|gb|ACM33826.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 102
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG L YS ++S+ + F ++GSV + K++ +R T R K +GFV G+ A DAIN +
Sbjct: 5 LYVGNLAYSVRDESLHQQFSQFGSVTSAKVMMERDTGRSKGFGFVEMGSDSEAQDAINGL 64
Query: 101 NGRTIDGRVVRV 112
NGR++DGR + V
Sbjct: 65 NGRSVDGRALTV 76
>gi|354476121|ref|XP_003500273.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 1 [Cricetulus griseus]
Length = 614
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|11762098|gb|AAG40327.1|AF322194_1 variant polyadenylation protein CSTF-64 [Mus musculus]
Length = 630
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|356568734|ref|XP_003552565.1| PREDICTED: uncharacterized protein LOC100807155 [Glycine max]
Length = 244
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VGG+ YS ++ S+R+ F +YG V+ VK++ DR T R + +GFVTF A AI M
Sbjct: 42 LFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAIQGM 101
Query: 101 NGRTIDGRVVRVSEVATRGRK 121
+G+ + GR +RV+ R R
Sbjct: 102 DGQDLHGRRIRVNYATERSRP 122
>gi|255645506|gb|ACU23248.1| unknown [Glycine max]
Length = 243
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VGG+ YS ++ S+R+ F +YG V+ VK++ DR T R + +GFVTF A AI M
Sbjct: 42 LFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFVTFATSEDASSAIQGM 101
Query: 101 NGRTIDGRVVRVSEVATRGRK 121
+G+ + GR +RV+ R R
Sbjct: 102 DGQDLHGRRIRVNYATERSRP 122
>gi|355705153|gb|EHH31078.1| RNA-binding motif protein, X-linked 2, partial [Macaca mulatta]
Length = 321
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 4 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 63
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 64 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 112
>gi|168006572|ref|XP_001755983.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692913|gb|EDQ79268.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 234
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +YVGGL + E V VF +YG VV V +V D++T + K + F+ + + RS V A
Sbjct: 34 DSAYIYVGGLSFGLTEGDVLAVFAQYGEVVDVNLVRDKATGKSKGFAFLAYEDQRSTVLA 93
Query: 97 INDMNGRTIDGRVVRVSEVATRGRK 121
++++NG +D R+++V V+ RK
Sbjct: 94 VDNLNGARVDSRIIKVDHVSDYKRK 118
>gi|410212532|gb|JAA03485.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
gi|410251714|gb|JAA13824.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
gi|410308778|gb|JAA32989.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
gi|410333627|gb|JAA35760.1| RNA binding motif protein, X-linked 2 [Pan troglodytes]
Length = 322
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|406907930|gb|EKD48603.1| RNA-binding protein [uncultured bacterium]
Length = 100
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
+YVG LPYS EDS+R++F+++G V + K+V D+ S R K + FV N AI +
Sbjct: 3 IYVGNLPYSITEDSLRELFEQFGDVSSTKVVVDQISGRSKGFAFVDMSNDEEGEAAIEKL 62
Query: 101 NGRTIDGRVVRVSEV---ATRGRKSNSGRDQFRHGHRH 135
NG +DGR + V++ A R K SG Q R R
Sbjct: 63 NGHELDGRTIVVNKAKPRAPRDSKPRSGGFQPRGPRRF 100
>gi|119632204|gb|EAX11799.1| RNA binding motif protein, X-linked 2, isoform CRA_a [Homo sapiens]
Length = 321
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 4 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 63
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 64 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 112
>gi|403279255|ref|XP_003931175.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Saimiri
boliviensis boliviensis]
Length = 342
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 25 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 84
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 85 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 133
>gi|259155082|ref|NP_001158783.1| Heterogeneous nuclear ribonucleoprotein G [Salmo salar]
gi|223647384|gb|ACN10450.1| Heterogeneous nuclear ribonucleoprotein G [Salmo salar]
Length = 290
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ K F KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLDTETNEKALEKHFSKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA +MNG+++DG+ ++V E AT+
Sbjct: 64 DAAREMNGKSLDGKPIKV-EQATK 86
>gi|426397384|ref|XP_004064898.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Gorilla gorilla
gorilla]
Length = 322
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|428165677|gb|EKX34667.1| hypothetical protein GUITHDRAFT_119213 [Guillardia theta CCMP2712]
Length = 219
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIND 99
+++VG LP+ +E ++ +F+K+G VV+V +++D+ S R + +GFV + N +SA DA+++
Sbjct: 136 TLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQSAKDAVSN 195
Query: 100 MNGRTIDGRVVRVS 113
+NG +DGR + VS
Sbjct: 196 LNGMPLDGREISVS 209
>gi|351723185|ref|NP_001236758.1| uncharacterized protein LOC100499841 [Glycine max]
gi|255627057|gb|ACU13873.1| unknown [Glycine max]
Length = 143
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Query: 8 RQGVSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV 67
RQG + S P+ + + N I S +++GGL Y ++ S++ F +G VV
Sbjct: 12 RQGAARSTHAPVAS--MLNYIRCM------SSSKLFIGGLSYGVDDQSLKDAFSGFGDVV 63
Query: 68 AVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113
K++ DR S R + +GFV F N SA A++ M+G+ ++GR +RVS
Sbjct: 64 DAKVITDRDSGRSRGFGFVNFSNDESASSALSAMDGKDLNGRSIRVS 110
>gi|194042423|ref|XP_001926989.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 1 [Sus scrofa]
Length = 615
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|449486948|ref|XP_004157450.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 173
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
S V+VGGL Y ++ + + F KYG VV +++ DR T R + +GFVTFG A AI
Sbjct: 39 SSKVFVGGLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAI 98
Query: 98 NDMNGRTIDGRVVRVSEVATR 118
++G+ +DGR +R S R
Sbjct: 99 QALDGQDLDGRRIRCSYATDR 119
>gi|449439323|ref|XP_004137435.1| PREDICTED: glycine-rich RNA-binding protein 2, mitochondrial-like
[Cucumis sativus]
Length = 171
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
S V+VGGL Y ++ + + F KYG VV +++ DR T R + +GFVTFG A AI
Sbjct: 39 SSKVFVGGLSYGTDDQRLTEAFTKYGEVVEARVIMDRDTGRSRGFGFVTFGASEDASSAI 98
Query: 98 NDMNGRTIDGRVVRVSEVATR 118
++G+ +DGR +R S R
Sbjct: 99 QALDGQDLDGRRIRCSYATDR 119
>gi|118600973|ref|NP_057108.2| RNA-binding motif protein, X-linked 2 [Homo sapiens]
gi|62512110|sp|Q9Y388.2|RBMX2_HUMAN RecName: Full=RNA-binding motif protein, X-linked 2
gi|4938275|emb|CAB43745.1| hypothetical protein [Homo sapiens]
gi|62020769|gb|AAH33750.1| RNA binding motif protein, X-linked 2 [Homo sapiens]
gi|119632205|gb|EAX11800.1| RNA binding motif protein, X-linked 2, isoform CRA_b [Homo sapiens]
gi|158259171|dbj|BAF85544.1| unnamed protein product [Homo sapiens]
Length = 322
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|444707906|gb|ELW49054.1| Cleavage stimulation factor subunit 2 tau variant [Tupaia
chinensis]
Length = 654
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|62896707|dbj|BAD96294.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant variant [Homo sapiens]
Length = 616
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGSIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|417412278|gb|JAA52529.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15, partial [Desmodus rotundus]
Length = 678
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 51 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 110
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 111 LNGREFSGRALRVDNAAS 128
>gi|395850631|ref|XP_003797883.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Otolemur garnettii]
Length = 576
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 7/91 (7%)
Query: 34 MTIDDES------SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
MT+ D + SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF
Sbjct: 4 MTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NGR GR +RV A+
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRVDNAAS 94
>gi|332226384|ref|XP_003262369.1| PREDICTED: RNA-binding motif protein, X-linked 2 [Nomascus
leucogenys]
Length = 322
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|375268714|ref|NP_001243518.1| RNA binding motif protein, X-linked 2 [Bos taurus]
gi|296471256|tpg|DAA13371.1| TPA: RNA binding motif protein, X-linked 2-like protein [Bos
taurus]
Length = 358
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTI----------DDESSVYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D + +++GGLPY E + VF +YG +V
Sbjct: 25 TKVKLINELNEREVELGVAEKVSWHNEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 84
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS V A+++ NG I GR +RV V+
Sbjct: 85 INLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVS 133
>gi|426230684|ref|XP_004009394.1| PREDICTED: scaffold attachment factor B1-like [Ovis aries]
Length = 786
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 3/116 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN+++
Sbjct: 407 WVSGLSSTTRAADLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINNLH 466
Query: 102 GRTIDGRVVRVSEV--ATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYND 155
+ G+++ V +V G+K++ R+ + DR N R+ DR +D
Sbjct: 467 KTELHGKMISVEKVINEPAGKKTSERREGEGKKEKSSSTDRSANLKREEKADRKDD 522
>gi|358421036|ref|XP_001254105.2| PREDICTED: cleavage stimulation factor subunit 2-like [Bos taurus]
Length = 331
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|297263082|ref|XP_001089948.2| PREDICTED: putative RNA-binding protein 3 [Macaca mulatta]
Length = 135
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV+ R++
Sbjct: 64 MRAMNGDSLDGRQIRVAHAGKSARET 89
>gi|354476123|ref|XP_003500274.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 2 [Cricetulus griseus]
Length = 623
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|34810648|pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 70 LNGREFSGRALRVDNAAS 87
>gi|395850633|ref|XP_003797884.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Otolemur garnettii]
Length = 596
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 7/91 (7%)
Query: 34 MTIDDES------SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVT 86
MT+ D + SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF
Sbjct: 4 MTVRDPAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCE 63
Query: 87 FGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ + +A+ A+ ++NGR GR +RV A+
Sbjct: 64 YQDQETALSAMRNLNGREFSGRALRVDNAAS 94
>gi|291049789|ref|NP_001166928.1| RNA binding motif protein [Monodelphis domestica]
gi|284080635|gb|ADB77891.1| RNA binding motif protein [Monodelphis domestica]
Length = 392
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE + VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKGLEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKSIKV-EQATK 86
>gi|355562595|gb|EHH19189.1| hypothetical protein EGK_19854 [Macaca mulatta]
Length = 610
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 7 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 66
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 67 LNGREFSGRALRVDNAAS 84
>gi|392347178|ref|XP_003749751.1| PREDICTED: RNA binding motif protein, X-linked-like 1 [Rattus
norvegicus]
Length = 446
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V + ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
D DMNG+++DG+ ++V E AT+
Sbjct: 64 DVARDMNGKSLDGKAIKV-EQATK 86
>gi|187955032|gb|AAI46854.1| RNA binding motif protein, Y-linked, family 1, member A1 [Homo
sapiens]
gi|219841952|gb|AAI44578.1| RNA binding motif protein, Y-linked, family 1, member B [Homo
sapiens]
Length = 496
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG ++ G+ ++V +
Sbjct: 64 AAKDMNGTSLHGKAIKVEQA 83
>gi|34303937|ref|NP_689798.1| RNA-binding motif protein, Y chromosome, family 1 member F/J [Homo
sapiens]
gi|56090529|ref|NP_001006117.2| RNA-binding motif protein, Y chromosome, family 1 member F/J [Homo
sapiens]
gi|166199747|sp|Q15415.2|RBY1F_HUMAN RecName: Full=RNA-binding motif protein, Y chromosome, family 1
member F/J; AltName: Full=Y chromosome RNA recognition
motif 2
gi|20987385|gb|AAH30018.1| RNA binding motif protein, Y-linked, family 1, member F [Homo
sapiens]
gi|123980592|gb|ABM82125.1| RNA binding motif protein, Y-linked, family 1, member F [synthetic
construct]
gi|123995413|gb|ABM85308.1| RNA binding motif protein, Y-linked, family 1, member F [synthetic
construct]
gi|151555057|gb|AAI48577.1| RNA binding motif protein, Y-linked, family 1, member J [synthetic
construct]
gi|187956669|gb|AAI52393.1| RBMY1F protein [Homo sapiens]
gi|189069331|dbj|BAG36363.1| unnamed protein product [Homo sapiens]
gi|208967362|dbj|BAG73695.1| RNA binding motif protein, Y-linked, family 1, member F [synthetic
construct]
Length = 496
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG ++ G+ ++V +
Sbjct: 64 AAKDMNGTSLHGKAIKVEQA 83
>gi|407033602|gb|EKE36900.1| RNA recognition motif (RRM, RBD, or RNP domain) containing protein
[Entamoeba nuttalli P19]
Length = 136
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
+Y+G L YS ++S++ F+K+G+V K+V DR S R K +GFVTF A AI +M
Sbjct: 4 LYIGSLAYSVTDESLKAAFEKFGTVTDCKVVTDRDSQRSKGFGFVTFEKDEDAKKAIEEM 63
Query: 101 NGRTIDGRVVRV 112
N + ++GR ++V
Sbjct: 64 NEQELEGRRIKV 75
>gi|402880821|ref|XP_003903988.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant [Papio
anubis]
Length = 620
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|302794524|ref|XP_002979026.1| hypothetical protein SELMODRAFT_6997 [Selaginella moellendorffii]
gi|300153344|gb|EFJ19983.1| hypothetical protein SELMODRAFT_6997 [Selaginella moellendorffii]
Length = 130
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + ++ GGL Y NE + VF +YG VV V ++ D+ T + K YGF+ + + RS A
Sbjct: 34 DSAYIFFGGLAYELNEGDILAVFAQYGEVVDVNLIRDKGTGKSKGYGFLAYEDQRSTTLA 93
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++NG + GR +RV V
Sbjct: 94 VDNLNGAQVAGRTLRVDHV 112
>gi|388452994|ref|NP_001253727.1| cleavage stimulation factor subunit 2 tau variant [Macaca mulatta]
gi|355758732|gb|EHH61510.1| hypothetical protein EGM_21244 [Macaca fascicularis]
gi|383416951|gb|AFH31689.1| cleavage stimulation factor subunit 2 tau variant [Macaca mulatta]
gi|384946038|gb|AFI36624.1| cleavage stimulation factor subunit 2 tau variant [Macaca mulatta]
gi|387541538|gb|AFJ71396.1| cleavage stimulation factor subunit 2 tau variant [Macaca mulatta]
Length = 620
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|294461052|gb|ADE76094.1| unknown [Picea sitchensis]
Length = 150
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVK-IVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100
++VGGL + NE +R F YG ++ V+ I+N S K +GFV F + AV+A+ +M
Sbjct: 37 LFVGGLSFDTNEKVLRDAFSLYGEILEVRVIINRASGLSKGFGFVQFASETDAVNALKEM 96
Query: 101 NGRTIDGRVVRVSEVATRGRK 121
+G+++DGR +RV+ TR R+
Sbjct: 97 DGQSLDGRNIRVNFANTRARQ 117
>gi|219519651|gb|AAI44423.1| Unknown (protein for MGC:177960) [Homo sapiens]
Length = 459
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG ++ G+ ++V +
Sbjct: 64 AAKDMNGTSLHGKAIKVEQA 83
>gi|5531845|gb|AAD44497.1| RNA-binding protein [Homo sapiens]
Length = 276
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 20 KARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVAV 69
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V +
Sbjct: 6 KVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNI 65
Query: 70 KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 66 NLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|242280537|ref|YP_002992666.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
gi|242123431|gb|ACS81127.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
Length = 87
Score = 65.1 bits (157), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG LP+SA ED VR F+ +G VV+VK++ DR T R + +GFV + A++AI++
Sbjct: 4 NIYVGNLPWSATEDEVRAAFEAFGEVVSVKLIEDRETGRPRGFGFVEMEDA-GAMEAIDN 62
Query: 100 MNGRTIDGRVVRVSEVATRG 119
++G+ GR ++V+E R
Sbjct: 63 LDGKDFGGRNLKVNEAKPRA 82
>gi|14149675|ref|NP_056050.1| cleavage stimulation factor subunit 2 tau variant [Homo sapiens]
gi|71153234|sp|Q9H0L4.1|CSTFT_HUMAN RecName: Full=Cleavage stimulation factor subunit 2 tau variant;
AltName: Full=CF-1 64 kDa subunit tau variant; AltName:
Full=Cleavage stimulation factor 64 kDa subunit tau
variant; Short=CSTF 64 kDa subunit tau variant; AltName:
Full=TauCstF-64
gi|12053011|emb|CAB66681.1| hypothetical protein [Homo sapiens]
gi|24416591|gb|AAN05429.1| tCstF-64 [Homo sapiens]
gi|119574527|gb|EAW54142.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Homo sapiens]
gi|189067256|dbj|BAG36966.1| unnamed protein product [Homo sapiens]
Length = 616
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|302806382|ref|XP_002984941.1| hypothetical protein SELMODRAFT_7006 [Selaginella moellendorffii]
gi|300147527|gb|EFJ14191.1| hypothetical protein SELMODRAFT_7006 [Selaginella moellendorffii]
Length = 130
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + ++ GGL Y NE + VF +YG VV V ++ D+ T + K YGF+ + + RS A
Sbjct: 34 DSAYIFFGGLAYELNEGDILAVFAQYGEVVDVNLIRDKGTGKSKGYGFLAYEDQRSTTLA 93
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++NG + GR +RV V
Sbjct: 94 VDNLNGAQVAGRTLRVDHV 112
>gi|221057416|ref|XP_002261216.1| U1 small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|194247221|emb|CAQ40621.1| U1 small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
Length = 412
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 50/81 (61%)
Query: 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPR 91
V +T D + ++++G L Y NE ++K F+ YG + VKI+ D++ + K YGF+ F + +
Sbjct: 90 VDLTEDPKKTIFIGRLSYDVNEKKLKKEFEVYGKIKKVKIIYDKNFKPKGYGFIEFEHTK 149
Query: 92 SAVDAINDMNGRTIDGRVVRV 112
S DA N +G+ ID R + V
Sbjct: 150 SFNDAYNLADGKKIDNRRILV 170
>gi|293346666|ref|XP_002726404.1| PREDICTED: RNA binding motif protein, X-linked-like 1 [Rattus
norvegicus]
Length = 441
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V + ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
D DMNG+++DG+ ++V E AT+
Sbjct: 64 DVARDMNGKSLDGKAIKV-EQATK 86
>gi|20380061|gb|AAH28239.1| Cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Homo sapiens]
gi|325463311|gb|ADZ15426.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [synthetic construct]
Length = 616
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|410974961|ref|XP_003993907.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant [Felis
catus]
Length = 613
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|410043860|ref|XP_001163035.2| PREDICTED: cleavage stimulation factor subunit 2 tau variant
isoform 4 [Pan troglodytes]
gi|410335357|gb|JAA36625.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Pan troglodytes]
gi|410335359|gb|JAA36626.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Pan troglodytes]
gi|410335361|gb|JAA36627.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Pan troglodytes]
gi|410335363|gb|JAA36628.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau
variant [Pan troglodytes]
Length = 615
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|397469483|ref|XP_003806381.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant [Pan
paniscus]
Length = 615
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|57530169|ref|NP_001006433.1| cleavage stimulation factor subunit 2 [Gallus gallus]
gi|53128673|emb|CAG31323.1| hypothetical protein RCJMB04_5b8 [Gallus gallus]
Length = 475
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|320162535|ref|YP_004175760.1| RNA-binding domain-containing protein [Anaerolinea thermophila
UNI-1]
gi|319996389|dbj|BAJ65160.1| RNA-binding region [Anaerolinea thermophila UNI-1]
Length = 105
Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIND 99
++YVG LP+SANED +R F YG+V + ++ D+ S + + +GFV N A AI
Sbjct: 2 NIYVGNLPFSANEDDLRSAFAAYGTVTSAAVIKDQFSGQSRGFGFVEMPNQAEAEAAIQG 61
Query: 100 MNGRTIDGRVVRVSEVATR 118
+NG+ + GR +RV+E R
Sbjct: 62 LNGKELKGRALRVNEARPR 80
>gi|123473695|ref|XP_001320034.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121902831|gb|EAY07811.1| hypothetical protein TVAG_312100 [Trichomonas vaginalis G3]
Length = 215
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100
S+++G +P+ E ++++F K+G V++ KI +++ R K YGFV+F A AI+ M
Sbjct: 32 SIHIGNIPFELTEPKLKEIFGKFGEVLSSKIPTNQANRSKGYGFVSFALKEDAQKAIDSM 91
Query: 101 NGRTIDGRVVRV 112
N +DGR + V
Sbjct: 92 NNTELDGRKIEV 103
>gi|115441831|ref|NP_001045195.1| Os01g0916600 [Oryza sativa Japonica Group]
gi|2624328|emb|CAA05729.1| OsGRP2 [Oryza sativa Japonica Group]
gi|19386753|dbj|BAB86134.1| OsGRP2 [Oryza sativa Japonica Group]
gi|20805007|dbj|BAB92683.1| OsGRP2 [Oryza sativa Japonica Group]
gi|113534726|dbj|BAF07109.1| Os01g0916600 [Oryza sativa Japonica Group]
gi|125528847|gb|EAY76961.1| hypothetical protein OsI_04919 [Oryza sativa Indica Group]
gi|125573102|gb|EAZ14617.1| hypothetical protein OsJ_04542 [Oryza sativa Japonica Group]
gi|215765299|dbj|BAG86996.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768370|dbj|BAH00599.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 150
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
++VGGL ++ N+DS+++ F +G V +++NDR S R + +GFV+F N A A++ M
Sbjct: 39 LFVGGLSWNTNDDSLKEAFTSFGDVTEARVINDRESGRSRGFGFVSFANGDDAKSAMDAM 98
Query: 101 NGRTIDGRVVRV 112
+G+ ++GR +RV
Sbjct: 99 DGKELEGRSIRV 110
>gi|224133740|ref|XP_002321649.1| predicted protein [Populus trichocarpa]
gi|222868645|gb|EEF05776.1| predicted protein [Populus trichocarpa]
Length = 295
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG LP+ + + +VF ++G VV+ ++V+D T R + +GFVT + DAI +
Sbjct: 212 IYVGNLPWGVDSGRLEEVFSEHGKVVSAQVVSDWETGRSRGFGFVTMSSESELNDAIAAL 271
Query: 101 NGRTIDGRVVRVSEVATRGRKSN 123
+G+ +DGR +RV+ A R R+S+
Sbjct: 272 DGQELDGRAIRVNVAAERPRRSS 294
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSV-VAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
+E+ +YVG LPY + + +FD+ G+V ++ I N + + +GFVT +
Sbjct: 113 PEEAKIYVGNLPYDVTSEKLAMLFDQAGTVEISEVIYNTETDTSRGFGFVTMSTVEESDK 172
Query: 96 AINDMNGRTIDGRVVRVSEVATRGRK 121
AI N +DGR++ V++ A RG +
Sbjct: 173 AIEMFNRYNLDGRLLTVNKAAPRGSR 198
>gi|449498377|ref|XP_002191180.2| PREDICTED: cleavage stimulation factor subunit 2 [Taeniopygia
guttata]
Length = 575
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|296236404|ref|XP_002763305.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Callithrix
jacchus]
Length = 342
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 25 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 84
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 85 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 133
>gi|281348298|gb|EFB23882.1| hypothetical protein PANDA_020101 [Ailuropoda melanoleuca]
Length = 612
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|262196624|ref|YP_003267833.1| RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
gi|262079971|gb|ACY15940.1| RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Length = 125
Score = 64.7 bits (156), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+ ++VGGL + ++ S+R F+++G+V K++ DR T R + +GFVTF A AI
Sbjct: 3 NKIFVGGLSWDTDDSSLRAAFERFGAVTEAKVITDRDTGRSRGFGFVTFAESGQAAAAIE 62
Query: 99 DMNGRTIDGRVVRVSEVATR 118
+M+G +DGR +RV+E R
Sbjct: 63 EMDGVELDGRNIRVNEAQER 82
>gi|344241215|gb|EGV97318.1| Cleavage stimulation factor 64 kDa subunit, tau variant [Cricetulus
griseus]
Length = 645
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|426364779|ref|XP_004049473.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Gorilla gorilla gorilla]
gi|426364781|ref|XP_004049474.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
[Gorilla gorilla gorilla]
Length = 617
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|425770690|gb|EKV09156.1| RNA splicing factor (Pad-1), putative [Penicillium digitatum Pd1]
gi|425772037|gb|EKV10463.1| RNA splicing factor (Pad-1), putative [Penicillium digitatum PHI26]
Length = 556
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 64/139 (46%), Gaps = 16/139 (11%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+YVG + +S ED + VF+ +G + V++ D + R K Y FV F NP A DA+ MN
Sbjct: 267 LYVGNVHFSITEDDLTNVFEPFGELEFVQLQKDETGRSKGYAFVQFANPEQARDALEKMN 326
Query: 102 GRTIDGRVVRVSEVATRGRKSNSGRDQF---RHGHRHKGRDRDN--NRHRDRYQDRYNDR 156
G + GR +RV G D+F H +R G N N + + R
Sbjct: 327 GFELAGRAIRV----------GLGNDKFTPDAHANRPSGASSTNQSNFQGSSFSGQ-GGR 375
Query: 157 SRERTSSQDRDKGMGREYE 175
+ S + D+ GRE E
Sbjct: 376 GVQAGGSNNFDRAGGRETE 394
>gi|632500|gb|AAB50269.1| polyadenylation factor 64 kDa subunit [Xenopus laevis]
Length = 497
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|296235404|ref|XP_002762884.1| PREDICTED: putative RNA-binding protein 3 [Callithrix jacchus]
Length = 159
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>gi|432111364|gb|ELK34639.1| Cleavage stimulation factor subunit 2 tau variant [Myotis davidii]
Length = 641
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|403260042|ref|XP_003922497.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant
[Saimiri boliviensis boliviensis]
Length = 621
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|359688008|ref|ZP_09258009.1| RNP-1 like RNA-binding protein [Leptospira licerasiae serovar
Varillal str. MMD0835]
Length = 100
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 63/102 (61%), Gaps = 6/102 (5%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S ++VGGL +S + ++R+VF+ +G++ IV DR T R + +GFVTF + SA A++
Sbjct: 3 SKLFVGGLSWSTTDLTLRQVFETHGAIQEANIVVDRETGRSRGFGFVTFVDQSSANAAVS 62
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDR 140
++NG+ +DGR + VS + R D+ R+ +R RDR
Sbjct: 63 ELNGKDLDGRNIVVSVAEDKSRS-----DRNRNTNRKFQRDR 99
>gi|212722336|ref|NP_001132163.1| uncharacterized protein LOC100193584 [Zea mays]
gi|194693616|gb|ACF80892.1| unknown [Zea mays]
Length = 234
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 45 GGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR 103
GGL ++ + +S+ F YG ++ K++ DR T R + +GFVTF + S +DAI +MNG+
Sbjct: 88 GGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGK 147
Query: 104 TIDGRVVRVSEV 115
+DGR + V++
Sbjct: 148 ELDGRNITVNQA 159
>gi|20257695|gb|AAM16013.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 30 ERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTF 87
ER +M D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF
Sbjct: 1 EREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTF 60
Query: 88 GNPRSAVDAINDMNGRTIDGRVVRVSEV 115
+ AI MNG+ +DGR + V+E
Sbjct: 61 STEDAMRSAIEGMNGKELDGRNITVNEA 88
>gi|224373359|ref|YP_002607731.1| RNA-binding protein [Nautilia profundicola AmH]
gi|223589280|gb|ACM93016.1| RNA-binding protein [Nautilia profundicola AmH]
Length = 84
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 5/80 (6%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD-AIN 98
++YVG + Y A ED +R VF +YG V++VKI+NDR T R K +GFV S D AI
Sbjct: 3 TIYVGNINYQATEDDLRPVFAEYGEVISVKIINDRETGRSKGFGFVEM---ESGADTAIE 59
Query: 99 DMNGRTIDGRVVRVSEVATR 118
+++G+ GR +RV+E R
Sbjct: 60 ELDGKDFQGRRLRVNEARPR 79
>gi|395546030|ref|XP_003774897.1| PREDICTED: RNA-binding motif protein, X chromosome [Sarcophilus
harrisii]
Length = 413
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D ++VGGL NE ++ VF KYG +V V ++ DR T + + + F+TF +P A
Sbjct: 23 ADRPGKLFVGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETSKSRGFAFITFESPADAK 82
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+ +DG+ ++V E AT+
Sbjct: 83 DAARDMNGKLLDGKSIKV-EQATK 105
>gi|116780918|gb|ABK21879.1| unknown [Picea sitchensis]
Length = 172
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ ++ S++ F +G ++ KI++DR T R + +GFVTF + +S DAI
Sbjct: 8 EYRCFVGGLAWATDDRSLQDAFSPFGEILESKIISDRETGRSRGFGFVTFSDEQSMRDAI 67
Query: 98 NDMNGRTIDGRVVRVSEV 115
+ MNG+ +DGR + V+
Sbjct: 68 DAMNGKVLDGRNITVNPA 85
>gi|297686917|ref|XP_002820977.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant [Pongo
abelii]
Length = 625
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|121596409|ref|YP_988305.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
gi|120608489|gb|ABM44229.1| RNP-1 like RNA-binding protein [Acidovorax sp. JS42]
Length = 149
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG LPYS + + + F ++G+V + K++ +R T R K +GFV G+ A +AIN M
Sbjct: 5 LYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAINGM 64
Query: 101 NGRTIDGRVVRVSEV 115
NG+++ GR + V+E
Sbjct: 65 NGQSLGGRSIVVNEA 79
>gi|262199927|ref|YP_003271136.1| RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
gi|262083274|gb|ACY19243.1| RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Length = 207
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 79/155 (50%), Gaps = 17/155 (10%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
S +YVG L YS E+++R VF++ G V +V I+ DR T R + + FV + +A +A+
Sbjct: 3 SKLYVGNLSYSTTEEALRSVFEEGGKEVRSVAIILDRETGRSRGFAFVQMASEDAAREAM 62
Query: 98 NDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDRS 157
++GR +DGR +R++E R++ R G +G + +R + +
Sbjct: 63 ESLDGRELDGRQMRITEA----------RERERGGEGARGLEGRGGPRGERREGGWE--- 109
Query: 158 RERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDE 192
RER RD G GRE D R P +RF +E
Sbjct: 110 RERVGP--RDAGRGRESSAPADERRGPPPERFEEE 142
>gi|133246|sp|P19682.1|ROC3_NICSY RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP;
Flags: Precursor
gi|100388|pir||S12109 ribonucleoprotein, 28K, precursor - common tobacco
gi|19750|emb|CAA37880.1| unnamed protein product [Nicotiana sylvestris]
Length = 276
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFG 88
ER T +YVG +P+ ++ + +VF ++G VV+ ++V DR S R + +GFVT
Sbjct: 181 ERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMS 240
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSN 123
+ +AI +++G+T+DGR +RV+ R R++
Sbjct: 241 SEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNT 275
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+++ ++VG LPY + + + ++F + G V +++ +R T R + +GFVT A A
Sbjct: 95 EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKA 154
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
+ + ++GR++ V++ A RG + F+ +R
Sbjct: 155 VELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYR 192
>gi|380709246|gb|AEE42608.1| glycine-rich RNA-binding protein 1, partial [Chelidonium majus]
Length = 146
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ ++ S+ K F Y +V KI+NDR T + +GFVTF N ++ D I MN
Sbjct: 12 FVGGLAWATDDQSLEKAFSSYRGIVESKIINDRETGWSRGFGFVTFANEQAMKDVIEGMN 71
Query: 102 GRTIDGRVVRVSEVATR 118
G+ +D R + V+EV R
Sbjct: 72 GQNLDSRSIIVNEVYFR 88
>gi|358336634|dbj|GAA28804.2| RNA-binding protein with serine-rich domain 1 [Clonorchis sinensis]
Length = 570
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 23 VIFNLIEERVKMT--IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR--STR 78
++ L++ER K + + + V L + N+ + ++F +G + +V + DR
Sbjct: 248 IVEKLVKERSKSPSVLPPFTRILVEKLTRNVNKAHITEIFSVWGKIHSVDMPPDRLHPEF 307
Query: 79 GKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119
+ Y +VTF NP SA DA+N MNG IDG VVRV+EV +R
Sbjct: 308 SRSYAYVTFENPSSAADAVNFMNGGQIDGEVVRVTEVLSRA 348
>gi|302343499|ref|YP_003808028.1| RNP-1 like RNA-binding protein [Desulfarculus baarsii DSM 2075]
gi|301640112|gb|ADK85434.1| RNP-1 like RNA-binding protein [Desulfarculus baarsii DSM 2075]
Length = 89
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
S+YVG L + + EDSVR +F++YG+V +VK++ D+ T R + +GFV + +A +AI
Sbjct: 4 SIYVGNLSFHSTEDSVRNLFEQYGAVQSVKVITDQETGRSRGFGFVEM-DSDAAENAIRA 62
Query: 100 MNGRTIDGRVVRVSEV 115
+NG +DGR ++V+E
Sbjct: 63 LNGADLDGRALKVNEA 78
>gi|444518829|gb|ELV12414.1| Cleavage stimulation factor subunit 2 [Tupaia chinensis]
Length = 409
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|225434618|ref|XP_002279321.1| PREDICTED: uncharacterized protein LOC100246760 [Vitis vinifera]
Length = 429
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
V+VGG+P+ E + VF +YG +V V +V D+ T + K + FV + + RS A++++
Sbjct: 38 VFVGGIPFDLTEGDLLAVFSQYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTNLAVDNL 97
Query: 101 NGRTIDGRVVRVSEVAT 117
NG I GR++RV V+
Sbjct: 98 NGAQILGRIIRVDHVSN 114
>gi|328850756|gb|EGF99917.1| hypothetical protein MELLADRAFT_118186 [Melampsora larici-populina
98AG31]
Length = 667
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 5/85 (5%)
Query: 33 KMTIDDES----SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTF 87
K DD S +++VGGL ++ ++D ++K F+K+G V++ +++ +R T R K +G+V F
Sbjct: 390 KAKTDDASGDIKNLFVGGLSWNVDDDWLKKEFEKFGEVISARVITERGTERSKGFGYVDF 449
Query: 88 GNPRSAVDAINDMNGRTIDGRVVRV 112
+P A A+ M G IDGR + V
Sbjct: 450 ASPEDARKAVEAMAGTEIDGRTINV 474
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+++++G LP+SA +DSV + F +YG + +V++ D T R K +G+V F +A A+N
Sbjct: 501 TTLFIGNLPFSATQDSVYEAFSEYGDINSVRLPTDPETERIKGFGYVEFATQEAATAAVN 560
Query: 99 --DMNGRTIDGRVVRV 112
+G ID R R+
Sbjct: 561 VGRGDGIYIDQRQARL 576
>gi|242084350|ref|XP_002442600.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
gi|241943293|gb|EES16438.1| hypothetical protein SORBIDRAFT_08g022740 [Sorghum bicolor]
Length = 165
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ +++S+ F YG V+ KI+ DR T R + +GFVTF +
Sbjct: 5 DVEYRCFVGGLAWATDDNSLHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRS 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|226499338|ref|NP_001149519.1| glycine-rich RNA-binding protein 8 [Zea mays]
gi|195627730|gb|ACG35695.1| glycine-rich RNA-binding protein 8 [Zea mays]
Length = 198
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDA 96
DE ++G L +S ++S++ F K+G++ K+V D+ S R + +GFVTF ++ DA
Sbjct: 5 DEYRCFIGNLSWSTTDESLKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQAMEDA 64
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDR 148
I MNG +DGR + V + +G GRD R+G R R+R + R R
Sbjct: 65 IEGMNGLDLDGRNITVDKAQPQG----PGRD--RNGDRDYDRERGSRYERGR 110
>gi|67537390|ref|XP_662469.1| hypothetical protein AN4865.2 [Aspergillus nidulans FGSC A4]
gi|40741753|gb|EAA60943.1| hypothetical protein AN4865.2 [Aspergillus nidulans FGSC A4]
gi|259482272|tpe|CBF76595.1| TPA: nucleolin protein Nsr1, putative (AFU_orthologue;
AFUA_3G07710) [Aspergillus nidulans FGSC A4]
Length = 524
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSA 93
T + +++VG LP+SANEDSV +VF G+V+ +++ D S R K +G+V + + A
Sbjct: 379 TSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEA 438
Query: 94 VDAINDMNGRTIDGRVVRV 112
A N++ G IDGR +R+
Sbjct: 439 RKAYNELQGAEIDGRPIRL 457
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
++++VG L ++ E+ + + F+++G + A +I+ +R T R + +G+V F N A A
Sbjct: 277 ANLFVGNLSWNVTEEWLHQEFEQFGELSA-RIMTERDTGRSRGFGYVEFTNAADAAKAYE 335
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGR 138
M IDGR + + + AT GR +N + F+ +++ R
Sbjct: 336 AMKEHEIDGRKINL-DYAT-GRPANKDQGGFKERAQNRAR 373
>gi|229367606|gb|ACQ58783.1| Heterogeneous nuclear ribonucleoprotein G [Anoplopoma fimbria]
Length = 289
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL E ++ + F KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETTEKALEQYFSKYGGIVEVILMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
DA +MNG+++DG+ ++V E AT+ + ++GR
Sbjct: 64 DAAREMNGKSLDGKPIKV-EQATKPQFESAGR 94
>gi|20257711|gb|AAM16021.1| glycine-rich RNA binding protein [Zea mays]
Length = 150
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 30 ERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTF 87
ER +M D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF
Sbjct: 2 EREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTF 61
Query: 88 GNPRSAVDAINDMNGRTIDGRVVRVSEV 115
+ AI MNG+ +DGR + V+E
Sbjct: 62 STEDAMRSAIEGMNGKELDGRNITVNEA 89
>gi|194337130|ref|YP_002018924.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194309607|gb|ACF44307.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 90
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIND 99
++Y+G L Y+ ED +R F ++G V + I+ND+ S R K +GFV N A +AI
Sbjct: 2 NIYIGNLAYTVTEDDLRDAFSEFGQVESASIINDKFSGRSKGFGFVDMPNESEAREAIES 61
Query: 100 MNGRTIDGRVVRVSEVATR 118
MN + ++GR ++V+E R
Sbjct: 62 MNEKDLNGRTIKVNEAKPR 80
>gi|344296752|ref|XP_003420068.1| PREDICTED: cleavage stimulation factor subunit 2-like [Loxodonta
africana]
Length = 582
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|20257693|gb|AAM16012.1| glycine-rich RNA binding protein [Zea mays]
Length = 153
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 52/91 (57%), Gaps = 2/91 (2%)
Query: 27 LIEERVKMTIDD-ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGF 84
+ ER +M D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GF
Sbjct: 1 FVGEREEMAASDVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGF 60
Query: 85 VTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115
VTF + AI MNG+ +DGR + V+E
Sbjct: 61 VTFSXXDAMRSAIEGMNGKELDGRNITVNEA 91
>gi|400597950|gb|EJP65674.1| U2 snRNP component IST3 [Beauveria bassiana ARSEF 2860]
Length = 319
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 4/121 (3%)
Query: 15 IVVPIKARVIFNLIEERVKMTID--DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV 72
+ + + I N I D D + VY GGLPY +E + +F ++G V +K+V
Sbjct: 6 AIQALNKKEIENGISPEASWHTDYRDTAYVYFGGLPYELSEGDIITIFSQFGEPVFLKLV 65
Query: 73 NDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRH 131
D+ T + K +G++ + N RS A++++ G + GR++RV A + + +D+F+
Sbjct: 66 RDKETGKSKGFGWLKYENQRSTDLAVDNLGGAEVGGRLLRVDH-ARYSMRDDEDQDEFKV 124
Query: 132 G 132
G
Sbjct: 125 G 125
>gi|358059890|dbj|GAA94320.1| hypothetical protein E5Q_00970 [Mixia osmundae IAM 14324]
Length = 173
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VGGL ++ +DS+ F +YG V ++ DR T R + +GFVT +P +A AI +
Sbjct: 23 LFVGGLAWATTDDSLFSAFSQYGEVTDCIVMKDRETGRSRGFGFVTMSDPAAAEQAIEAL 82
Query: 101 NGRTIDGRVVRVSEVATRG 119
N +DGR VRV + A RG
Sbjct: 83 NNGDLDGRQVRVDKAADRG 101
>gi|355757333|gb|EHH60858.1| RNA-binding motif protein 3 [Macaca fascicularis]
Length = 157
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV R +
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|147840589|emb|CAN72715.1| hypothetical protein VITISV_032469 [Vitis vinifera]
Length = 737
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
V+VGG+P+ E + VF +YG +V V +V D+ T + K + FV + + RS A++++
Sbjct: 38 VFVGGIPFDLTEGDLLAVFSQYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTNLAVDNL 97
Query: 101 NGRTIDGRVVRVSEVA 116
NG I GR++RV V+
Sbjct: 98 NGAQILGRIIRVDHVS 113
>gi|133247|sp|P28644.1|ROC1_SPIOL RecName: Full=28 kDa ribonucleoprotein, chloroplastic; Short=28RNP
Length = 233
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
VYVG LP+ + + ++F ++G VV+ ++V+DR T R + +GFVT + DAI +
Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 210
Query: 101 NGRTIDGRVVRVSEVATRGRKS 122
+G+T+DGR VRV+ R R++
Sbjct: 211 DGQTLDGRAVRVNVAEERPRRA 232
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ ++VG LPY + + + +FD G V +++ +R T R + +GFVT A A
Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 112
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
+ +NG +DGR + V++ A RG + R F R
Sbjct: 113 VELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCR 150
>gi|442753297|gb|JAA68808.1| Putative alternative splicing factor srp20/9g8 rrm superfamily
[Ixodes ricinus]
Length = 110
Score = 64.3 bits (155), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 96 AINDMNGRTIDGRVVRVSE 114
DMNG+++DG+ ++V +
Sbjct: 65 VARDMNGKSLDGKAIKVEQ 83
>gi|4098582|gb|AAD00328.1| RBM1 [Sminthopsis macroura]
Length = 390
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE + VF KYG +V V ++ DR T + + + F+TF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKGLESVFGKYGRIVEVLLMKDRETNKSRGFAFITFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
DA DMNG+++DG+ ++V E AT+ + GR
Sbjct: 64 DAARDMNGKSLDGKSIKV-EQATKPSFESGGR 94
>gi|1778374|gb|AAB71417.1| glycine-rich RNA-binding protein PsGRBP [Pisum sativum]
gi|206586422|gb|ACI15745.1| glycine-rich RNA-binding protein [Pisum sativum]
Length = 146
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 9/107 (8%)
Query: 8 RQGVSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV 67
RQG + S P+ + + N + S +++GGL Y ++ S++ F YG VV
Sbjct: 12 RQGATQSSHAPVSS--MLNYLRHM------SSSKLFIGGLSYGVDDQSLKDAFASYGEVV 63
Query: 68 AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113
+++ DR T R + +GFV F + SA A++ M+G+ ++GR +RVS
Sbjct: 64 EARVITDRDTGRSRGFGFVNFTSDESATSALSAMDGQDLNGRNIRVS 110
>gi|51258747|gb|AAH80037.1| Cstf-64-prov protein [Xenopus laevis]
Length = 498
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|440901693|gb|ELR52585.1| Cleavage stimulation factor subunit 2 [Bos grunniens mutus]
Length = 619
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|148684930|gb|EDL16877.1| mCG114434 [Mus musculus]
Length = 153
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + + F+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSQGFDFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRV 112
+ MNG ++DGR +RV
Sbjct: 64 MRAMNGESLDGRQIRV 79
>gi|21309|emb|CAA41023.1| 28kD RNA binding protein [Spinacia oleracea]
Length = 226
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
VYVG LP+ + + ++F ++G VV+ ++V+DR T R + +GFVT + DAI +
Sbjct: 144 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 203
Query: 101 NGRTIDGRVVRVSEVATRGRKS 122
+G+T+DGR VRV+ R R++
Sbjct: 204 DGQTLDGRAVRVNVAEERPRRA 225
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ ++VG LPY + + + +FD G V +++ +R T R + +GFVT A A
Sbjct: 46 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 105
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
+ +NG +DGR + V++ A RG + R F R
Sbjct: 106 VELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCR 143
>gi|255633638|gb|ACU17178.1| unknown [Glycine max]
Length = 196
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 54/89 (60%), Gaps = 1/89 (1%)
Query: 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPR 91
M+ + +++GG+ YS +E S+R+ F KYG VV +I+ DR T R + +GF+T+ +
Sbjct: 35 SMSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVE 94
Query: 92 SAVDAINDMNGRTIDGRVVRVSEVATRGR 120
A AI ++G+ + GR +RV+ R R
Sbjct: 95 EASSAIQALDGQDLHGRPIRVNYANERPR 123
>gi|171683191|ref|XP_001906538.1| hypothetical protein [Podospora anserina S mat+]
gi|170941555|emb|CAP67207.1| unnamed protein product [Podospora anserina S mat+]
Length = 398
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VY GGLPY E V +F +YG +K+V D+ T + K +G++ + + RS A
Sbjct: 53 DTAFVYFGGLPYELTEGDVITIFSQYGEPTFLKLVRDKETGKSKGFGWLKYEDQRSTDLA 112
Query: 97 INDMNGRTIDGRVVRVSEVATRGR 120
++++ G I GR++RV + R
Sbjct: 113 VDNLGGAEIAGRLIRVDHARYKAR 136
>gi|5803137|ref|NP_006734.1| putative RNA-binding protein 3 [Homo sapiens]
gi|383872909|ref|NP_001244635.1| RNA binding motif (RNP1, RRM) protein 3 [Macaca mulatta]
gi|332860686|ref|XP_521047.2| PREDICTED: putative RNA-binding protein 3 isoform 2 [Pan
troglodytes]
gi|332860688|ref|XP_003317502.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Pan
troglodytes]
gi|397471359|ref|XP_003807263.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Pan paniscus]
gi|397471361|ref|XP_003807264.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Pan paniscus]
gi|402910082|ref|XP_003917720.1| PREDICTED: putative RNA-binding protein 3 [Papio anubis]
gi|426395802|ref|XP_004064149.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Gorilla
gorilla gorilla]
gi|426395804|ref|XP_004064150.1| PREDICTED: putative RNA-binding protein 3 isoform 2 [Gorilla
gorilla gorilla]
gi|1710620|sp|P98179.1|RBM3_HUMAN RecName: Full=Putative RNA-binding protein 3; AltName:
Full=RNA-binding motif protein 3; AltName: Full=RNPL
gi|881954|gb|AAB17212.1| RNPL [Homo sapiens]
gi|13905080|gb|AAH06825.1| RNA binding motif (RNP1, RRM) protein 3 [Homo sapiens]
gi|119571152|gb|EAW50767.1| RNA binding motif (RNP1, RRM) protein 3, isoform CRA_c [Homo
sapiens]
gi|119571153|gb|EAW50768.1| RNA binding motif (RNP1, RRM) protein 3, isoform CRA_c [Homo
sapiens]
gi|380815298|gb|AFE79523.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|380815300|gb|AFE79524.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|380815302|gb|AFE79525.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|383420491|gb|AFH33459.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|383420493|gb|AFH33460.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|384948600|gb|AFI37905.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|384948602|gb|AFI37906.1| putative RNA-binding protein 3 [Macaca mulatta]
gi|410228038|gb|JAA11238.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV R +
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|410445335|gb|ADB77883.2| Rbmy [Bos taurus]
Length = 387
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M D + +GGL E+S+ F KYG +V V ++ DR+T + + + F+TF +P
Sbjct: 1 MEADRPGKLLIGGLSAETTEESLEAEFGKYGHIVEVLLIKDRNTNKSRGFAFITFESPAD 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRD 141
A DA +MNG+ +DG+ ++V E A + + GR + + R++G R+
Sbjct: 61 AKDAAKEMNGKFLDGKTIKV-EQANKPSFESGGRQKLQPPARNRGHPRN 108
>gi|4104336|gb|AAD01997.1| heterogeneous nuclear ribonucleoprotein G [Macropus eugenii]
Length = 394
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D ++VGGL NE ++ VF KYG +V V ++ DR T + + + F+TF +P A
Sbjct: 4 ADRPGKLFVGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETSKSRGFAFITFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+ +DG+ ++V E AT+
Sbjct: 64 DAARDMNGKLLDGKSIKV-EQATK 86
>gi|222112647|ref|YP_002554911.1| rnp-1 like RNA-binding protein [Acidovorax ebreus TPSY]
gi|221732091|gb|ACM34911.1| RNP-1 like RNA-binding protein [Acidovorax ebreus TPSY]
Length = 155
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG LPYS + + + F ++G+V + K++ +R T R K +GFV G+ A +AIN M
Sbjct: 5 LYVGNLPYSVRDQDLEQAFSQFGAVTSAKVMMERDTGRSKGFGFVEMGSDAEAQEAINGM 64
Query: 101 NGRTIDGRVVRVSEV 115
NG+++ GR + V+E
Sbjct: 65 NGQSLGGRSIVVNEA 79
>gi|238011394|gb|ACR36732.1| unknown [Zea mays]
Length = 149
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF + +
Sbjct: 5 DVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRN 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|219888685|gb|ACL54717.1| unknown [Zea mays]
gi|414869098|tpg|DAA47655.1| TPA: glycine-rich protein1 [Zea mays]
Length = 144
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF + +
Sbjct: 5 DVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRN 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|195612516|gb|ACG28088.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|414869096|tpg|DAA47653.1| TPA: glycine-rich protein1 isoform 1 [Zea mays]
gi|414869097|tpg|DAA47654.1| TPA: glycine-rich protein1 isoform 2 [Zea mays]
Length = 155
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF + +
Sbjct: 5 DVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRN 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|195609654|gb|ACG26657.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612080|gb|ACG27870.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195612572|gb|ACG28116.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 156
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF + +
Sbjct: 5 DVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRN 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|357490653|ref|XP_003615614.1| RNA binding domain protein [Medicago truncatula]
gi|355516949|gb|AES98572.1| RNA binding domain protein [Medicago truncatula]
Length = 393
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + V+VGG+P+ E V VF +YG VV + +V D+ T + K + F+ + + RS A
Sbjct: 34 DSAYVFVGGIPFDFTEGDVIAVFAQYGEVVDINLVRDKGTGKSKGFAFIAYEDQRSTNLA 93
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++NG + GR++RV V
Sbjct: 94 VDNLNGAQVSGRIIRVDHV 112
>gi|332255488|ref|XP_003276864.1| PREDICTED: putative RNA-binding protein 3 isoform 1 [Nomascus
leucogenys]
Length = 157
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV R +
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|223942615|gb|ACN25391.1| unknown [Zea mays]
Length = 120
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF + +
Sbjct: 5 DVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRN 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|118488717|gb|ABK96169.1| unknown [Populus trichocarpa]
Length = 241
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 55/84 (65%), Gaps = 1/84 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GG+ + +++ +++ FDKYG+VV +I+ DR T R + +GFVT+ + A AI
Sbjct: 40 SKIFIGGISFQTDDNGLKEAFDKYGNVVEARIIMDRDTGRSRGFGFVTYTSSEEASSAIQ 99
Query: 99 DMNGRTIDGRVVRVSEVATRGRKS 122
M+G+ + GR VRV+ R +++
Sbjct: 100 AMDGQDLHGRRVRVNYATERPQRT 123
>gi|355715858|gb|AES05425.1| RNA binding motif protein, X-linked 2 [Mustela putorius furo]
Length = 182
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 20 KARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVAV 69
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V +
Sbjct: 13 KVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNI 72
Query: 70 KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 73 NLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 120
>gi|223946841|gb|ACN27504.1| unknown [Zea mays]
gi|407232618|gb|AFT82651.1| C3H30 C3H type transcription factor, partial [Zea mays subsp. mays]
gi|414873727|tpg|DAA52284.1| TPA: RNA-binding motif protein, X-linked 2 [Zea mays]
Length = 298
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VYVGG+P+ E + +F +YG VV V +V D+ T + K + F+ + + RS + A
Sbjct: 34 DSAYVYVGGVPFDLTEGDLLAIFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILA 93
Query: 97 INDMNGRTIDGRVVRVSEVA 116
++++NG + GR+++V V+
Sbjct: 94 VDNLNGAKVLGRIIKVDHVS 113
>gi|410255528|gb|JAA15731.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV R +
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|356526497|ref|XP_003531854.1| PREDICTED: uncharacterized protein LOC100818300 [Glycine max]
Length = 245
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VGG+ YS ++ S+R+ F +YG V+ VK++ DR T R + +GF+TF A AI M
Sbjct: 42 LFVGGISYSTDDMSLRESFARYGEVIDVKVIMDRETGRSRGFGFITFATSEDASSAIQGM 101
Query: 101 NGRTIDGRVVRVSEVATRGRK 121
+G+ + GR +RV+ R R
Sbjct: 102 DGQDLHGRRIRVNYATERSRP 122
>gi|225457213|ref|XP_002284026.1| PREDICTED: uncharacterized protein LOC100256940 [Vitis vinifera]
Length = 277
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GGL YS ++ S+R+ F KYG V+ +++ DR T R + +GFVTF + A AI
Sbjct: 40 SKLFIGGLSYSTDDTSLREAFHKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSAIQ 99
Query: 99 DMNGRTIDGRVVRVSEVATRGR 120
++G+ + GR VRV+ R R
Sbjct: 100 ALDGQDLHGRRVRVNYATDRAR 121
>gi|255941952|ref|XP_002561745.1| Pc16g14480 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586368|emb|CAP94118.1| Pc16g14480 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 562
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 13/137 (9%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+YVG + +S E+ + VF+ +G + V++ D + R K Y FV F NP A DA+ MN
Sbjct: 274 LYVGNVHFSITEEDLTNVFEPFGELEFVQLQKDETGRSKGYAFVQFANPEQARDALEKMN 333
Query: 102 GRTIDGRVVRVSEVATRGRKSNSGRDQF---RHGHRHKGRDRDNNRHRDRYQDRYNDRSR 158
G + GR +RV G D+F H +R G + + R
Sbjct: 334 GFELAGRAIRV----------GLGNDKFTPDTHANRPSGASTNQPNFQGSSFSGQGGRGV 383
Query: 159 ERTSSQDRDKGMGREYE 175
+ S D+ GRE E
Sbjct: 384 QAGGSNSFDRAGGREPE 400
>gi|194373969|dbj|BAG62297.1| unnamed protein product [Homo sapiens]
Length = 553
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|351731832|ref|ZP_08949523.1| RNP-1 like RNA-binding protein [Acidovorax radicis N35]
Length = 177
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG LPYS + + + F ++G+V + K++ +R T R K +GFV GN A AIN M
Sbjct: 5 LYVGNLPYSVRDSDLEQAFGQFGAVTSAKVMMERDTGRSKGFGFVEMGNDAEAQAAINGM 64
Query: 101 NGRTIDGRVVRVSEV 115
NG+ + GR + V+E
Sbjct: 65 NGQPLGGRSIVVNEA 79
>gi|90075670|dbj|BAE87515.1| unnamed protein product [Macaca fascicularis]
Length = 135
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV R +
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|168035555|ref|XP_001770275.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678492|gb|EDQ64950.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 106
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 1/77 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ + S+ + F +G VV K++ DR T R + +GFVTF + S +AI
Sbjct: 1 EFRCFVGGLAWATTDGSLEEAFRPFGEVVQCKVITDRETGRSRGFGFVTFADENSMNEAI 60
Query: 98 NDMNGRTIDGRVVRVSE 114
DMNG+ +DGR + V++
Sbjct: 61 KDMNGKELDGRNITVNQ 77
>gi|344280641|ref|XP_003412091.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein,
X-linked-like-2-like [Loxodonta africana]
Length = 395
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAV 94
D +++GGL +E ++ F KYGS+V V +V DR +T+ + + F+TF +P A
Sbjct: 4 ADRPGKLFIGGLNPETDEKALEAAFGKYGSIVEVLLVKDRETTKSRGFAFITFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V++
Sbjct: 64 AAARDMNGKSLDGKTIKVAQA 84
>gi|255563618|ref|XP_002522811.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223538049|gb|EEF39662.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 134
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
S +++GGL Y N+DS++ F +G VV +++ DR T R + +GFV F + SA A+
Sbjct: 35 SSKLFIGGLSYGTNDDSLKDAFSGFGDVVTARVITDRDTGRSRGFGFVDFSSVDSASSAL 94
Query: 98 NDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKG 137
+ M+G+ + GR +RVS R + R F +G + G
Sbjct: 95 SAMDGQELHGRNIRVSYATERAPRPGGPR-SFNNGFGNDG 133
>gi|147898871|ref|NP_001080179.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Xenopus
laevis]
gi|27735464|gb|AAH41291.1| Cstf-64 protein [Xenopus laevis]
Length = 518
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|27807239|ref|NP_777110.1| cleavage stimulation factor subunit 2 [Bos taurus]
gi|71153228|sp|Q8HXM1.1|CSTF2_BOVIN RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|24416593|gb|AAN05427.1| CstF-64 [Bos taurus]
gi|296470997|tpg|DAA13112.1| TPA: cleavage stimulation factor 64 kDa subunit [Bos taurus]
Length = 572
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|317154439|ref|YP_004122487.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
gi|316944690|gb|ADU63741.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
Length = 87
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/82 (39%), Positives = 52/82 (63%), Gaps = 2/82 (2%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG LP+SA ED +R F YG V +VK++ DR T R + +GFV + A++AI +
Sbjct: 4 NIYVGNLPWSATEDEIRAAFGAYGEVTSVKLIEDRETGRPRGFGFVEMDDA-GALEAIEN 62
Query: 100 MNGRTIDGRVVRVSEVATRGRK 121
++G+ GR ++V+E R +
Sbjct: 63 LDGKDFGGRNIKVNEAKPRAER 84
>gi|226496357|ref|NP_001149007.1| RNA-binding motif protein, X-linked 2 [Zea mays]
gi|195623912|gb|ACG33786.1| RNA-binding motif protein, X-linked 2 [Zea mays]
Length = 298
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VYVGG+P+ E + +F +YG VV V +V D+ T + K + F+ + + RS + A
Sbjct: 34 DSAYVYVGGVPFDLTEGDLLAIFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILA 93
Query: 97 INDMNGRTIDGRVVRVSEVA 116
++++NG + GR+++V V+
Sbjct: 94 VDNLNGAKVLGRIIKVDHVS 113
>gi|395545903|ref|XP_003775408.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked
2 [Sarcophilus harrisii]
Length = 310
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
V++GGLPY E + VF +YG +V + +V D+ T + K + F+ + + RS + A+++
Sbjct: 19 VFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 78
Query: 101 NGRTIDGRVVRVSEVA 116
NG I GR +RV VA
Sbjct: 79 NGIKIRGRTIRVDHVA 94
>gi|133248|sp|P19683.1|ROC4_NICSY RecName: Full=31 kDa ribonucleoprotein, chloroplastic; Flags:
Precursor
gi|19741|emb|CAA40364.1| 31kD chloroplast ribonucleoprotein [Nicotiana sylvestris]
gi|19756|emb|CAA37885.1| unnamed protein product [Nicotiana sylvestris]
Length = 315
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
ER T + +YVG +P+ ++ + ++F ++G VV+ ++V DR T R + +GFVT
Sbjct: 220 ERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMA 279
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSN 123
+ DAI +++G+++DGR +RV+ R R++
Sbjct: 280 SEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNT 314
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+ ++VG LPY + + + ++F++ G V +++ +R T + + +GFVT A A+
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
N ++GR++ V++ A RG + F +R
Sbjct: 196 MYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYR 231
>gi|119224067|gb|AAI26544.1| CSTF2 protein [Bos taurus]
Length = 592
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|326520181|dbj|BAK04015.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 404
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
V+VGG+P+ E + VF +YG VV V +V D++T + K + FV + + RS V A++++
Sbjct: 38 VFVGGVPFDLTEGDLLAVFAQYGEVVDVNLVRDKATGKSKGFAFVAYEDQRSTVLAVDNL 97
Query: 101 NGRTIDGRVVRVSEV 115
NG + GR++RV V
Sbjct: 98 NGAKVLGRIIRVDHV 112
>gi|21619877|gb|AAH33135.1| Similar to cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kD, partial [Homo sapiens]
Length = 559
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 16 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 75
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 76 LNGREFSGRALRVDNAAS 93
>gi|356508744|ref|XP_003523114.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Glycine
max]
Length = 305
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
S+YVG LP+ + + ++F ++G+VV ++V DR T R + +GFVT + DA+
Sbjct: 221 SIYVGNLPWDVDNTRLEQIFSEHGNVVNARVVYDRETRRSRGFGFVTMSDETEMKDAVAA 280
Query: 100 MNGRTIDGRVVRVSEVATRGRK 121
++G+++DGR +RVS R R+
Sbjct: 281 LDGQSLDGRPIRVSVAEDRPRR 302
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ ++VG LPY + + +F++ G+V +++ +R T + + +GFVT A +A
Sbjct: 122 EEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAENA 181
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRH 131
+ + DGR++ V++ + RG + R RH
Sbjct: 182 VEKFSRYDFDGRLLTVNKASPRGTRPE--RPPPRH 214
>gi|88811230|ref|ZP_01126486.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
gi|88791769|gb|EAR22880.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
Length = 94
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
S+YVG LP+SA+ED +R++F YG+V +V+++ DR T R + +GFVT + A AI
Sbjct: 3 SIYVGNLPFSASEDELRELFAAYGNVDSVRLMTDRDTGRPRGFGFVTMSDT-DAASAIEA 61
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQFR 130
++G+ GR +RV+E R + + G Q R
Sbjct: 62 LDGKDFGGRNLRVNEAQERKERPSGGPRQAR 92
>gi|426257829|ref|XP_004022524.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Ovis
aries]
Length = 572
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|348570430|ref|XP_003471000.1| PREDICTED: cleavage stimulation factor subunit 2-like [Cavia
porcellus]
Length = 577
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|311276614|ref|XP_003135279.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 1
[Sus scrofa]
Length = 572
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|403298762|ref|XP_003940176.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403298764|ref|XP_003940177.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 577
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|406917506|gb|EKD56278.1| RNA-binding protein [uncultured bacterium]
Length = 89
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAV 94
+++++ +YVG LPYSA DS++++F G VV +++D+ S R K +GFVT + +A
Sbjct: 1 MEEKNKLYVGNLPYSATSDSLKELFAGSGEVVDAVVISDKFSGRSKGFGFVTMKDDAAAE 60
Query: 95 DAINDMNGRTIDGRVVRVS 113
AI D +G+ +DGR ++V+
Sbjct: 61 KAIKDTDGKEVDGRNIKVN 79
>gi|194332803|ref|NP_001123707.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Xenopus
(Silurana) tropicalis]
gi|189442601|gb|AAI67314.1| LOC100170457 protein [Xenopus (Silurana) tropicalis]
Length = 498
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|431895723|gb|ELK05144.1| Cleavage stimulation factor 64 kDa subunit [Pteropus alecto]
Length = 577
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|390480015|ref|XP_003735829.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2
[Callithrix jacchus]
Length = 577
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|303279705|ref|XP_003059145.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458981|gb|EEH56277.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 106
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAINDM 100
+++GGLP+ +E ++R + ++YG V +VKI D TR + + F+TF A+DA +
Sbjct: 1 IFLGGLPFDTDERTLRDLCERYGDVESVKISYDVETRKSRGFAFITFARLDDALDAAERI 60
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHK 136
NG ++GR+VR + + ++N G +H H+ +
Sbjct: 61 NGTDVEGRIVRCNMAEDKPERANGGGSAGKHHHQAR 96
>gi|432877328|ref|XP_004073146.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
isoform 1 [Oryzias latipes]
Length = 494
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 30 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 89
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 90 LNGREFSGRALRVDNAAS 107
>gi|374253685|sp|D4AE41.1|RMXL1_RAT RecName: Full=RNA binding motif protein, X-linked-like-1; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G-like 1;
Contains: RecName: Full=RNA binding motif protein,
X-linked-like-1, N-terminally processed
Length = 388
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V + ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
D DMNG+++DG+ ++V E AT+
Sbjct: 64 DVARDMNGKSLDGKAIKV-EQATK 86
>gi|348515337|ref|XP_003445196.1| PREDICTED: cleavage stimulation factor subunit 2-like [Oreochromis
niloticus]
Length = 478
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 30 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 89
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 90 LNGREFSGRALRVDNAAS 107
>gi|157823445|ref|NP_001099899.1| polyadenylate-binding protein 4-like [Rattus norvegicus]
gi|149027259|gb|EDL82942.1| rCG37805 [Rattus norvegicus]
Length = 370
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 59/101 (58%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
++VY+ +++S+R VF KYG ++VK++ D S + K +GFV+F + ++A +A+ D
Sbjct: 190 TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVED 249
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDR 140
MNGR I+G+ + V + + ++ F + + R R
Sbjct: 250 MNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRAR 290
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
+S+YVG L ED + + F+ G V++++I D S R YG+V F A A+
Sbjct: 10 ASLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALE 69
Query: 99 DMNGRTIDGRVVRV 112
MN I G+ +R+
Sbjct: 70 TMNFDLIKGKSIRL 83
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100
+V++ L S + ++ + F +G +++ K++ D K YGFV + + R+A AI +M
Sbjct: 99 NVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEG-SKGYGFVHYQDQRAADRAIEEM 157
Query: 101 NGRTIDGRVVRVSEVATR 118
NG+ + + V+ +R
Sbjct: 158 NGKLLRDSTLFVARFKSR 175
>gi|380798899|gb|AFE71325.1| cleavage stimulation factor subunit 2, partial [Macaca mulatta]
Length = 575
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 15 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 74
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 75 LNGREFSGRALRVDNAAS 92
>gi|110638796|ref|YP_679005.1| RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
gi|110281477|gb|ABG59663.1| RNA binding protein [Cytophaga hutchinsonii ATCC 33406]
Length = 143
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VG LP+S E+ +R+ F++YG V +VKI++D+ T R K +GFV + +A AI+++
Sbjct: 3 IFVGSLPFSLEENELREFFEEYGEVSSVKIISDKFTGRSKGFGFVEMPDDAAAQKAIDEL 62
Query: 101 NGRTIDGRVVRV 112
NG ++GR + V
Sbjct: 63 NGAEVNGRTIVV 74
>gi|402910773|ref|XP_003918026.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Papio
anubis]
gi|402910775|ref|XP_003918027.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Papio
anubis]
Length = 577
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|426257831|ref|XP_004022525.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Ovis
aries]
Length = 592
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|383763833|ref|YP_005442815.1| putative RNA-binding region [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381384101|dbj|BAM00918.1| putative RNA-binding region [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 105
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
+YVG L Y ED +R+ F+ YG+V + I+ DR S + K +GFV + A+ AIN +
Sbjct: 3 IYVGNLSYRTTEDELRRTFEAYGAVSSASIIRDRESGQSKGFGFVEMPSDSEALAAINAL 62
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDR-DNNRHRDRY 149
N + + GR ++V++ R R+ + R G R + R R D NR R+R+
Sbjct: 63 NDKEVGGRRLKVNQA--RPREESGPR-----GGRPQSRPRSDQNRDRNRW 105
>gi|355757697|gb|EHH61222.1| RNA-binding motif protein, X-linked 2 [Macaca fascicularis]
Length = 334
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 59/106 (55%), Gaps = 11/106 (10%)
Query: 22 RVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVAVKI 71
++I L E V++ + D+ S +++GGLPY E + VF +YG +V + +
Sbjct: 20 KLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINL 79
Query: 72 VNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 80 VRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 125
>gi|332254742|ref|XP_003276491.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1
[Nomascus leucogenys]
Length = 577
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|335306285|ref|XP_003360436.1| PREDICTED: cleavage stimulation factor subunit 2-like isoform 2
[Sus scrofa]
Length = 592
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|432877330|ref|XP_004073147.1| PREDICTED: cleavage stimulation factor subunit 2 tau variant-like
isoform 2 [Oryzias latipes]
Length = 479
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 30 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 89
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 90 LNGREFSGRALRVDNAAS 107
>gi|197100099|ref|NP_001125111.1| cleavage stimulation factor subunit 2 [Pongo abelii]
gi|71153230|sp|Q5RDA3.1|CSTF2_PONAB RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|55726993|emb|CAH90254.1| hypothetical protein [Pongo abelii]
Length = 577
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|323650232|gb|ADX97202.1| cold-inducible RNA-binding protein [Perca flavescens]
Length = 80
Score = 63.9 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +++GGL + E+S+ F K+G++ V ++ DR T + +GFV + N A DA+
Sbjct: 1 EGKLFIGGLSFDTTEESLAAAFGKFGTIEKVDVIKDRDTGYSRGFGFVKYENSEDAKDAM 60
Query: 98 NDMNGRTIDGRVVRVSE 114
MNG+T+DGR +RV E
Sbjct: 61 EGMNGKTLDGRAIRVDE 77
>gi|4557493|ref|NP_001316.1| cleavage stimulation factor subunit 2 [Homo sapiens]
gi|332861154|ref|XP_003317595.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Pan
troglodytes]
gi|397478196|ref|XP_003810439.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Pan
paniscus]
gi|426396653|ref|XP_004064546.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1 [Gorilla
gorilla gorilla]
gi|461847|sp|P33240.1|CSTF2_HUMAN RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|181139|gb|AAA35724.1| cleavage stimulation factor [Homo sapiens]
gi|17389334|gb|AAH17712.1| Cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Homo
sapiens]
gi|32879899|gb|AAP88780.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Homo
sapiens]
gi|61359609|gb|AAX41742.1| cleavage stimulation factor 3' pre-RNA subunit 2 [synthetic
construct]
gi|61359616|gb|AAX41743.1| cleavage stimulation factor 3' pre-RNA subunit 2 [synthetic
construct]
gi|119623223|gb|EAX02818.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, isoform
CRA_a [Homo sapiens]
gi|123981258|gb|ABM82458.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
[synthetic construct]
gi|123996091|gb|ABM85647.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa
[synthetic construct]
gi|261860120|dbj|BAI46582.1| Cleavage stimulation factor 64 kDa subunit [synthetic construct]
gi|410256936|gb|JAA16435.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Pan
troglodytes]
gi|410289934|gb|JAA23567.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Pan
troglodytes]
Length = 577
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|168274276|dbj|BAG09558.1| chloroplast RNA binding protein [Mesembryanthemum crystallinum]
Length = 306
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 1/94 (1%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
ER + VYVG LP+ + + +VF ++G V++ ++V+DR T R + +GFV+
Sbjct: 212 ERPPREFEPSCRVYVGNLPWDVDNARLEQVFSEHGKVLSARVVSDRETGRSRGFGFVSMA 271
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKS 122
+ DAI ++G+T+DGR +RV+ R R++
Sbjct: 272 SESEMNDAIAALDGQTLDGRAIRVNVAEERPRRA 305
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ ++VG LPY + + + ++FD G V +++ +R T R + +GFVT A A
Sbjct: 126 EEAKLFVGNLPYDVDSERLAQIFDGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 185
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR----HKGRDRDNNRHRDRYQDR 152
+ +NG ++GR++ V++ A RG + +F R + D DN R + +
Sbjct: 186 VEMLNGFDMNGRLLTVNKAAPRGSRPERPPREFEPSCRVYVGNLPWDVDNARLEQVFSEH 245
Query: 153 YNDRSRERTSSQDRDKGMGREYEHV 177
S S DR+ G R + V
Sbjct: 246 GKVLSARVVS--DRETGRSRGFGFV 268
>gi|388495644|gb|AFK35888.1| unknown [Medicago truncatula]
Length = 92
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + ++ + F K+G + K++NDR T R + +GFVTF +S D
Sbjct: 5 DVEYRCFVGGLAWATDSRALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRD 64
Query: 96 AINDMNGRTIDG 107
AI +MNG+ IDG
Sbjct: 65 AIEEMNGQDIDG 76
>gi|358248672|ref|NP_001239665.1| uncharacterized protein LOC100790280 [Glycine max]
gi|255644452|gb|ACU22730.1| unknown [Glycine max]
Length = 290
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIND 99
S+YVG LP+ + ++++F K+G+VV ++V DR S R + +GFVT + DA+
Sbjct: 206 SIYVGNLPWDVDNTRLKQIFSKHGNVVNARVVYDRESGRSRGFGFVTMSDETEMNDAVAA 265
Query: 100 MNGRTIDGRVVRVSEVATRGRK 121
++G ++DGR ++VS R R+
Sbjct: 266 LDGESLDGRAIKVSVAEDRPRR 287
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ ++VG LPY + + +F++ G+V +++ +R T + + +GFVT A A
Sbjct: 107 EEAKLFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAESA 166
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ N IDGR++ V++ +
Sbjct: 167 VEKFNRYDIDGRLLTVNKAS 186
>gi|410988989|ref|XP_004000752.1| PREDICTED: LOW QUALITY PROTEIN: cleavage stimulation factor subunit
2 [Felis catus]
Length = 577
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|291408103|ref|XP_002720432.1| PREDICTED: cleavage stimulation factor subunit 2 [Oryctolagus
cuniculus]
Length = 576
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|74007924|ref|XP_861405.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 5 [Canis
lupus familiaris]
Length = 577
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|417403608|gb|JAA48603.1| Putative mrna cleavage and polyadenylation factor i complex subunit
rna15 [Desmodus rotundus]
Length = 647
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|355681345|gb|AER96778.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Mustela
putorius furo]
Length = 582
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|147774036|emb|CAN71872.1| hypothetical protein VITISV_038162 [Vitis vinifera]
Length = 272
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
S +++GGL YS ++ S+R+ F KYG V+ +++ DR T R + +GFVTF + A A
Sbjct: 38 SSSKLFIGGLSYSTDDTSLREAFYKYGEVIEARVIVDRETGRSRGFGFVTFTSSEEASSA 97
Query: 97 INDMNGRTIDGRVVRVSEVATRGR 120
I ++G+ + GR VRV+ R R
Sbjct: 98 IQALDGQDLHGRRVRVNYATDRAR 121
>gi|301788318|ref|XP_002929575.1| PREDICTED: cleavage stimulation factor subunit 2-like [Ailuropoda
melanoleuca]
Length = 582
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|296235968|ref|XP_002763125.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 1
[Callithrix jacchus]
Length = 597
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|399031232|ref|ZP_10731328.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
gi|398070499|gb|EJL61796.1| RRM domain-containing RNA-binding protein [Flavobacterium sp.
CF136]
Length = 119
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VG LP+S E +R+ F+ YG+V +VKI+ D+ T R K +GFV N A AI+++
Sbjct: 3 IFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFVEMTNDDEAQKAIDEL 62
Query: 101 NGRTIDGRVVRV 112
NG T+ GR + V
Sbjct: 63 NGATVQGRAIVV 74
>gi|381186866|ref|ZP_09894434.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
gi|379651172|gb|EIA09739.1| RNA-binding region RNP-1 [Flavobacterium frigoris PS1]
Length = 120
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VG LP+S E +R+ F+ YG+V +VKI+ D+ T R K +GFV N A AI+++
Sbjct: 3 IFVGSLPFSIEEADLRESFEAYGAVDSVKIITDKFTGRSKGFGFVEMTNDDEAQKAIDEL 62
Query: 101 NGRTIDGRVVRV 112
NG T+ GR + V
Sbjct: 63 NGATVQGRAIVV 74
>gi|225456840|ref|XP_002278832.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic [Vitis vinifera]
Length = 327
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
ER + +YVG LP+ + + +VF ++G VV ++V DR T R + +GFVT
Sbjct: 232 ERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMS 291
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKS 122
+ DAI +G+T+DGR +RV+ R R+S
Sbjct: 292 SQTELEDAIAATDGQTLDGRTIRVNVAEERPRRS 325
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ V+VG LPY + + + ++F++ G V +++ +R T R + +GFV+ A A
Sbjct: 146 EEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKA 205
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
++ + +DGR++ V++ A RG + F R
Sbjct: 206 VDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFR 243
>gi|297733663|emb|CBI14910.3| unnamed protein product [Vitis vinifera]
Length = 306
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
ER + +YVG LP+ + + +VF ++G VV ++V DR T R + +GFVT
Sbjct: 211 ERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMS 270
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKS 122
+ DAI +G+T+DGR +RV+ R R+S
Sbjct: 271 SQTELEDAIAATDGQTLDGRTIRVNVAEERPRRS 304
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 1/99 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
+E+ V+VG LPY + + + ++F++ G V +++ +R T R + +GFV+ A
Sbjct: 124 PEEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEK 183
Query: 96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
A++ + +DGR++ V++ A RG + F R
Sbjct: 184 AVDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFR 222
>gi|196115100|ref|NP_001124486.1| cleavage stimulation factor, 3' pre-RNA subunit 2 [Rattus
norvegicus]
gi|195539770|gb|AAI68251.1| Cstf2 protein [Rattus norvegicus]
Length = 575
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|374584597|ref|ZP_09657689.1| RNP-1 like RNA-binding protein [Leptonema illini DSM 21528]
gi|373873458|gb|EHQ05452.1| RNP-1 like RNA-binding protein [Leptonema illini DSM 21528]
Length = 109
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVGGL + + ++R F+ +GSV +V DR T + + +GFVTF + SA AI+ M
Sbjct: 5 LYVGGLSWDTTDTTLRHSFEAHGSVHEAIVVMDRYTGKSRGFGFVTFADENSARTAISAM 64
Query: 101 NGRTIDGRVVRVSEVATRGR 120
NG +DGR + VSE R R
Sbjct: 65 NGTDLDGRSITVSEAQERSR 84
>gi|192764314|gb|ACF05701.1| alphaCstF-64 variant 4 [Mus musculus]
Length = 554
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|333999539|ref|YP_004532151.1| RNA-binding protein [Treponema primitia ZAS-2]
gi|333738431|gb|AEF83921.1| RNA-binding protein [Treponema primitia ZAS-2]
Length = 89
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG L Y+ ED++R +F +YG+V +VKI+ DR T K +GFV A AI
Sbjct: 5 LYVGNLSYNTYEDNLRTLFSQYGTVESVKIITDRDTGNSKGFGFVEMSTEEEAQAAIRGT 64
Query: 101 NGRTIDGRVVRVSEVATRGRKSN 123
N +DGR ++V+E + R+ N
Sbjct: 65 NSTDLDGRSIKVNEAMDKPRREN 87
>gi|410353769|gb|JAA43488.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa [Pan
troglodytes]
Length = 577
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|405122146|gb|AFR96913.1| RNA-binding protein [Cryptococcus neoformans var. grubii H99]
Length = 508
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 55/90 (61%), Gaps = 5/90 (5%)
Query: 28 IEERVKMTIDDE----SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCY 82
+E VK + DE + +YVGGLP+ E + +F ++G ++ V +V D+ T + + +
Sbjct: 144 LELGVKGSWHDEYKESAYIYVGGLPFELTEGDLITIFSQWGEIMDVNLVRDKETGKSRGF 203
Query: 83 GFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112
GF+ + + RS V A+++MNG I GR ++V
Sbjct: 204 GFLMYEDQRSTVLAVDNMNGTQIIGRTLKV 233
>gi|403298766|ref|XP_003940178.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 597
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|296217449|ref|XP_002755014.1| PREDICTED: RNA-binding motif protein, X-linked-like-2 [Callithrix
jacchus]
Length = 394
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL +E ++ F KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSN 123
A+ DMNG+T+DG+ ++V++ KS+
Sbjct: 64 AAVRDMNGKTLDGKAIKVAQATKPAFKSS 92
>gi|156348347|ref|XP_001621815.1| hypothetical protein NEMVEDRAFT_v1g47988 [Nematostella vectensis]
gi|156208091|gb|EDO29715.1| predicted protein [Nematostella vectensis]
Length = 78
Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
+++VG LP+S E +R F++YG+V +VKI++D+ T R K +GFV N A AI++
Sbjct: 2 NIFVGSLPFSIEEADLRGFFEEYGAVDSVKIISDKFTGRSKGFGFVEMPNDAEAQKAIDE 61
Query: 100 MNGRTIDGRVVRVSE 114
+NG T++GR + V++
Sbjct: 62 LNGGTVEGRTIVVNK 76
>gi|358381284|gb|EHK18960.1| hypothetical protein TRIVIDRAFT_44275 [Trichoderma virens Gv29-8]
Length = 320
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
Query: 16 VVPIKARVIFNLIEERVKMTID--DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVN 73
+ + + I N I +D D + VY GGLPY +E + +F ++G V +K+V
Sbjct: 7 IQALNKKEIENGISPDASWHVDYRDTAFVYFGGLPYELSEGDIITIFSQFGEPVFLKLVR 66
Query: 74 DRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHG 132
D+ T + K +G++ + + RS A++++ G I GR++RV + R + +D+F+ G
Sbjct: 67 DKETGKSKGFGWLKYEDQRSTDLAVDNLGGAEIGGRLLRVDHARYQAR-DDEDQDEFKVG 125
>gi|297304342|ref|XP_001089558.2| PREDICTED: cleavage stimulation factor subunit 2-like [Macaca
mulatta]
gi|402910777|ref|XP_003918028.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 3 [Papio
anubis]
gi|355704983|gb|EHH30908.1| hypothetical protein EGK_20728 [Macaca mulatta]
gi|355757534|gb|EHH61059.1| hypothetical protein EGM_18986 [Macaca fascicularis]
Length = 597
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|332861156|ref|XP_529072.3| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Pan
troglodytes]
gi|397478198|ref|XP_003810440.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Pan
paniscus]
gi|426396655|ref|XP_004064547.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Gorilla
gorilla gorilla]
Length = 597
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|332254744|ref|XP_003276492.1| PREDICTED: cleavage stimulation factor subunit 2 isoform 2
[Nomascus leucogenys]
Length = 597
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|18875338|ref|NP_573459.1| cleavage stimulation factor subunit 2 [Mus musculus]
gi|71153229|sp|Q8BIQ5.2|CSTF2_MOUSE RecName: Full=Cleavage stimulation factor subunit 2; AltName:
Full=CF-1 64 kDa subunit; AltName: Full=Cleavage
stimulation factor 64 kDa subunit; Short=CSTF 64 kDa
subunit; Short=CstF-64
gi|11139720|gb|AAG31814.1|AF317552_1 polyadenylation protein CSTF64 [Mus musculus]
gi|26353226|dbj|BAC40243.1| unnamed protein product [Mus musculus]
Length = 580
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|74007936|ref|XP_549135.2| PREDICTED: cleavage stimulation factor subunit 2 isoform 2 [Canis
lupus familiaris]
Length = 597
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|126030490|pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 9/108 (8%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +A
Sbjct: 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNA 64
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNR 144
DMNG+++ G+ ++V + + + F+ G R + NR
Sbjct: 65 AKDMNGKSLHGKAIKVEQ---------AKKPSFQSGGRRRPPASSRNR 103
>gi|348515473|ref|XP_003445264.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like 1-like
[Oreochromis niloticus]
Length = 391
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL E ++ + F KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
DA +MNG+++DG+ ++V E AT+ + ++GR
Sbjct: 64 DAAREMNGKSLDGKPIKV-EQATKPQFESAGR 94
>gi|397496325|ref|XP_003846130.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding motif protein, X-linked
2 [Pan paniscus]
Length = 350
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 20 KARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVAV 69
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V +
Sbjct: 6 KVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNI 65
Query: 70 KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 66 NLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|192764310|gb|ACF05699.1| betaCstF-64 variant 2 [Homo sapiens]
Length = 597
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|149055454|gb|EDM07038.1| rCG38164 [Rattus norvegicus]
Length = 363
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|91790716|ref|YP_551668.1| RNA recognition motif-containing protein [Polaromonas sp. JS666]
gi|91699941|gb|ABE46770.1| RNA-binding region RNP-1 (RNA recognition motif) [Polaromonas sp.
JS666]
Length = 151
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG LPYS ++ +++ F ++GSV + K++ +R T R K +GFV G+ A AIN M
Sbjct: 5 LYVGNLPYSVRDEDLQQSFGQFGSVTSAKVMMERDTGRSKGFGFVEMGSDAEAQAAINGM 64
Query: 101 NGRTIDGRVVRVSEV 115
NG+ + GR V V+E
Sbjct: 65 NGQPLGGRSVVVNEA 79
>gi|26328597|dbj|BAC28037.1| unnamed protein product [Mus musculus]
Length = 580
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|297745915|emb|CBI15971.3| unnamed protein product [Vitis vinifera]
Length = 375
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
V+VGG+P+ E + VF +YG +V V +V D+ T + K + FV + + RS A++++
Sbjct: 38 VFVGGIPFDLTEGDLLAVFSQYGEIVDVNLVRDKGTGKSKGFAFVAYEDQRSTNLAVDNL 97
Query: 101 NGRTIDGRVVRVSEVA 116
NG I GR++RV V+
Sbjct: 98 NGAQILGRIIRVDHVS 113
>gi|426245729|ref|XP_004016657.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Ovis
aries]
Length = 174
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D +++GGL + +E S+ F KYG + V ++ DR T + + + F+TF +P A
Sbjct: 5 DRPGKLFIGGLNHETDEKSLEAAFGKYGHISEVLLMKDRETNKSRGFAFITFESPADAKA 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A+ DMNG+++DG+ ++V++
Sbjct: 65 AVRDMNGKSLDGKAIKVAQA 84
>gi|4929627|gb|AAD34074.1|AF151837_1 CGI-79 protein [Homo sapiens]
Length = 351
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 20 KARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVAV 69
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V +
Sbjct: 6 KVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNI 65
Query: 70 KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 66 NLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|189218303|ref|YP_001938945.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
gi|189185161|gb|ACD82346.1| RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
Length = 143
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 71/119 (59%), Gaps = 7/119 (5%)
Query: 15 IVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND 74
+ V + A + F L+ + + + ++ + +YVG LP+ +E+ +R++F++YG V + ++ D
Sbjct: 23 LAVLLDADLRFELMLKEMSVFMN-RTRLYVGNLPFRISENDLREIFEQYGQVNEINLIVD 81
Query: 75 RST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKS-----NSGRD 127
+ T + + + FVT + ++A AIN++NG ++ GR + V+E R + NSGR
Sbjct: 82 KMTGQSRGFAFVTMESSQAAQSAINNLNGSSVSGRQIVVNEAKPREERPHRHRENSGRS 140
>gi|317152646|ref|YP_004120694.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
gi|316942897|gb|ADU61948.1| RNP-1 like RNA-binding protein [Desulfovibrio aespoeensis Aspo-2]
Length = 87
Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/79 (39%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG LP++ E+ +R F+ YG V +VK+VND T R + +GFV G+ + A++A+ +
Sbjct: 4 NLYVGNLPWNCTEEELRAAFEAYGEVRSVKLVNDHETDRPRGFGFVEMGD-QGALEAVEN 62
Query: 100 MNGRTIDGRVVRVSEVATR 118
+NG ++ GR ++V+E R
Sbjct: 63 LNGSSLGGRSIKVNEARPR 81
>gi|294460077|gb|ADE75621.1| unknown [Picea sitchensis]
Length = 95
Score = 63.5 bits (153), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 49/68 (72%)
Query: 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355
MEE K+ + ++QK+S+KLEE+L A+K + R+KQL KL CF+Q +Y+E+LKSC
Sbjct: 1 MEEESYKKQLFMSEMQKKSQKLEESLAIARKTALQRRKQLKKLQNCFLQFKDYSEKLKSC 60
Query: 356 EREFQVSI 363
E+E Q+ +
Sbjct: 61 EQELQLLV 68
>gi|115473215|ref|NP_001060206.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|113611742|dbj|BAF22120.1| Os07g0602600 [Oryza sativa Japonica Group]
gi|222637411|gb|EEE67543.1| hypothetical protein OsJ_25023 [Oryza sativa Japonica Group]
Length = 238
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
S ++VGGL Y+ ++ +++ VF YG V+ +I+ DR T + K YGF+T+ + A A+
Sbjct: 30 SSKLFVGGLSYATDDTTLKDVFSHYGDVLEARIIIDRDTGKSKGYGFITYTSSEEAAAAV 89
Query: 98 NDMNGRTIDGRVVRVSEV 115
M+G+ + GR+VRVS
Sbjct: 90 TAMDGKDLQGRIVRVSTA 107
>gi|410465997|ref|ZP_11319150.1| RRM domain-containing RNA-binding protein [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409980981|gb|EKO37622.1| RRM domain-containing RNA-binding protein [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 97
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 49/78 (62%), Gaps = 2/78 (2%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG LP+S NED +R +F YG V +VK++ DR T R + +GFV G+ A A+ +
Sbjct: 5 LYVGNLPFSTNEDEIRDLFAAYGDVTSVKLIVDRETGRLRGFGFVEMGDD-GADAAMQGL 63
Query: 101 NGRTIDGRVVRVSEVATR 118
NG+ GR +RV+E R
Sbjct: 64 NGKDFGGRDLRVNEAEER 81
>gi|351709510|gb|EHB12429.1| Cleavage stimulation factor 64 kDa subunit [Heterocephalus glaber]
Length = 597
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|4098580|gb|AAD00327.1| RBM1 [Macropus eugenii]
Length = 402
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
++++GGL NE + VF KYG +V V ++ D+ T + + + FVTF +P +A DA
Sbjct: 6 PGTLFIGGLNVGTNEKDLESVFGKYGHIVKVLLMKDQETNKSRGFAFVTFESPAAAKDAA 65
Query: 98 NDMNGRTIDGRVVRVSEV 115
DMNG+ +DG+ ++V +
Sbjct: 66 RDMNGKALDGKSIKVEQA 83
>gi|1350821|sp|P49314.1|ROC2_NICPL RecName: Full=31 kDa ribonucleoprotein, chloroplastic; AltName:
Full=CP-RBP31; Flags: Precursor
gi|19710|emb|CAA46233.1| RNA binding protein 31 [Nicotiana plumbaginifolia]
Length = 292
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSA 93
++D + VYVG L + ++ +++++F + G+VV K+V DR S R + +GFVT+ + +
Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEV 262
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRK 121
DAI+ +NG +DGR +RVS R R+
Sbjct: 263 NDAIDSLNGIDLDGRSIRVSAAEERPRR 290
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
++VG LP+S + ++ +F++ G+V V+++ D+ S R + +GFVT A
Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNN 143
NG IDGR +RV+ ++ NS R G+ G RD N
Sbjct: 150 NGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGN 192
>gi|297739973|emb|CBI30155.3| unnamed protein product [Vitis vinifera]
Length = 190
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 63/104 (60%), Gaps = 8/104 (7%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ ++VGGL ++ +E + F +YG ++ ++ +R T R + +GF+TF + R+ DA
Sbjct: 5 EENRIFVGGLGWNTSERHLEDAFSRYGKILESLVMMERDTGRPRGFGFITFADHRAMEDA 64
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDR 140
I +M+GR +DGRV+ V++ + +S G+ + GRDR
Sbjct: 65 IREMHGRELDGRVISVNKAQPKMGSEDS-------GYGYGGRDR 101
>gi|156101519|ref|XP_001616453.1| U1 small nuclear ribonucleoprotein 70 kDa [Plasmodium vivax Sal-1]
gi|148805327|gb|EDL46726.1| U1 small nuclear ribonucleoprotein 70 kDa, putative [Plasmodium
vivax]
Length = 452
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 2/87 (2%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
+T D + ++++G L Y NE ++K F+ YG + VKI+ D++ + K YGF+ F + +S
Sbjct: 92 LTNDPKKTIFIGRLSYDVNEKKLKKEFEVYGKIKKVKIIYDKNFKPKGYGFIEFEHTKSF 151
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGR 120
DA N +G+ ID R + V RGR
Sbjct: 152 NDAYNLADGKKIDNRRILVD--VERGR 176
>gi|410927616|ref|XP_003977237.1| PREDICTED: cleavage stimulation factor subunit 2-like [Takifugu
rubripes]
Length = 497
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 30 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 89
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 90 LNGREFSGRALRVDNAAS 107
>gi|192764316|gb|ACF05702.1| betaCstF-64 variant 1 [Mus musculus]
Length = 604
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|261351264|gb|ACX71299.1| RNA-binding protein RZ-1 [Capsicum annuum]
Length = 202
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ +DE ++G L +S ++ ++ F+K+G++V K+V D+ S R + +GFVTF + R+
Sbjct: 1 MSEEDEYRCFIGNLSWSTSDRGLKDAFEKFGNLVDAKVVLDKFSGRSRGFGFVTFDDKRA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
DAI MNG +DGR + V +
Sbjct: 61 MEDAIEAMNGMDLDGRAITVDKA 83
>gi|20257681|gb|AAM16006.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF +
Sbjct: 8 DVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXAMRS 67
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 68 AIEGMNGKELDGRNITVNEA 87
>gi|157823451|ref|NP_001100890.1| RNA-binding motif protein, X chromosome retrogene-like [Rattus
norvegicus]
gi|71152131|sp|P84586.1|RMXRL_RAT RecName: Full=RNA-binding motif protein, X chromosome
retrogene-like; AltName: Full=Heterogeneous nuclear
ribonucleoprotein G retrogene-like; Short=hnRNP G;
AltName: Full=RNA-binding motif protein, X chromosome
retrogene; Contains: RecName: Full=RNA-binding motif
protein, X chromosome retrogene-like, N-terminally
processed
gi|149037963|gb|EDL92323.1| RNA binding motif protein, X chromosome retrogene (predicted)
[Rattus norvegicus]
Length = 388
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V + ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
D DMNG+++DG+ ++V E AT+
Sbjct: 64 DVARDMNGKSLDGKAIKV-EQATK 86
>gi|345807592|ref|XP_549256.3| PREDICTED: RNA-binding motif protein, X-linked 2 [Canis lupus
familiaris]
Length = 336
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 20 KARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVAV 69
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V +
Sbjct: 6 KVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNI 65
Query: 70 KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 66 NLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>gi|348544233|ref|XP_003459586.1| PREDICTED: hypothetical protein LOC100697480 [Oreochromis
niloticus]
Length = 304
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + ++VGG PY E + VF +YG +V + +V D+ T + K + F+ + + RS + A
Sbjct: 34 DSAWIFVGGFPYELTEGDLICVFSQYGEIVNINLVRDKKTGKSKGFCFICYEDQRSTILA 93
Query: 97 INDMNGRTIDGRVVRVSEV 115
+++ NG I GR +RV V
Sbjct: 94 VDNFNGIKIKGRTIRVDHV 112
>gi|212534622|ref|XP_002147467.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210069866|gb|EEA23956.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 267
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 84/166 (50%), Gaps = 14/166 (8%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLP+ +E + +F +YG V V ++ D+ T + K + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPFDLSEGDIVTIFSQYGEPVHVNLIRDKDTGKSKGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEVATR-----GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQD 151
++++ G T+ GRV+RV + G + N ++ +G D D + R R +
Sbjct: 91 VDNLGGATVMGRVLRVDHTRYKRKEEEGEEDNVATIMGQNARGARGEDEDTDTER-RRKS 149
Query: 152 RYNDRSRERTSSQDRDKGMGRE----YEHVRDH-DRDPSRDRFSDE 192
R D + + +++ + M +E E +RDH D DP ++ E
Sbjct: 150 RRGDTN--ESDVEEKPRPMLKEERELAELMRDHDDEDPMKEYLIQE 193
>gi|76253771|ref|NP_956408.2| cleavage stimulation factor subunit 2 [Danio rerio]
gi|41107668|gb|AAH65442.1| Cleavage stimulation factor, 3' pre-RNA, subunit 2 [Danio rerio]
Length = 488
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 25 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 84
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 85 LNGREFSGRALRVDNAAS 102
>gi|333377706|ref|ZP_08469439.1| hypothetical protein HMPREF9456_01034 [Dysgonomonas mossii DSM
22836]
gi|332883726|gb|EGK04006.1| hypothetical protein HMPREF9456_01034 [Dysgonomonas mossii DSM
22836]
Length = 106
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++++ GL YS N++ +R +F++YG + + K++ D++T R K YGFV + + AI +
Sbjct: 2 NIFIAGLSYSINDNDLRDLFNEYGEISSAKVIMDKATGRSKGYGFVELEDNAAGQKAIEE 61
Query: 100 MNGRTIDGRVVRVSEVATR 118
+NG DGR + VSE R
Sbjct: 62 LNGAEYDGRTISVSEARPR 80
>gi|326673799|ref|XP_003199996.1| PREDICTED: cleavage stimulation factor subunit 2-like [Danio rerio]
Length = 488
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 25 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 84
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 85 LNGREFSGRALRVDNAAS 102
>gi|302894521|ref|XP_003046141.1| hypothetical protein NECHADRAFT_33762 [Nectria haematococca mpVI
77-13-4]
gi|256727068|gb|EEU40428.1| hypothetical protein NECHADRAFT_33762 [Nectria haematococca mpVI
77-13-4]
Length = 307
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y GGLPY +E V +F ++G V +K+V D+ T + K +G++ + + RS A
Sbjct: 15 DTAYIYFGGLPYELSEGDVVTIFSQFGEPVFLKLVRDKETGKSKGFGWLKYEDQRSTDLA 74
Query: 97 INDMNGRTIDGRVVRVSEVATRGR 120
++++ G I GR+VRV + R
Sbjct: 75 VDNLGGAEIGGRLVRVDHARYKAR 98
>gi|20257687|gb|AAM16009.1| glycine-rich RNA binding protein [Zea mays]
gi|20257713|gb|AAM16022.1| glycine-rich RNA binding protein [Zea mays]
Length = 149
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF +
Sbjct: 8 DVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRS 67
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 68 AIEGMNGKELDGRNITVNEA 87
>gi|20257715|gb|AAM16023.1| glycine-rich RNA binding protein [Zea mays]
gi|20257721|gb|AAM16026.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF +
Sbjct: 8 DVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRS 67
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 68 AIEGMNGKELDGRNITVNEA 87
>gi|195654321|gb|ACG46628.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|238010482|gb|ACR36276.1| unknown [Zea mays]
Length = 252
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
S ++VGG+ Y ++ S+R F KYG V+ +I+ DR S R + +GFVT+ + A AI
Sbjct: 30 SKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAIT 89
Query: 99 DMNGRTIDGRVVRV 112
++G+T+DGR +RV
Sbjct: 90 ALDGKTLDGRSIRV 103
>gi|192764312|gb|ACF05700.1| betaCstF-64 variant 3 [Mus musculus]
Length = 630
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|94536944|ref|NP_001035411.1| cold inducible RNA binding protein isoform 1 [Danio rerio]
gi|92098240|gb|AAI15178.1| Cold inducible RNA binding protein [Danio rerio]
Length = 193
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 12/81 (14%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
+ DE +++GGL Y E S+ + F KYG++ V ++ DR NP A D
Sbjct: 1 MSDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRE------------NPEDAKD 48
Query: 96 AINDMNGRTIDGRVVRVSEVA 116
A+ MNG+ +DGR++RV E
Sbjct: 49 AMAAMNGKQVDGRMIRVDEAG 69
>gi|356551855|ref|XP_003544288.1| PREDICTED: zinc finger CCCH domain-containing protein 42-like
[Glycine max]
Length = 354
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + V+VGG+P+ E + VF +YG VV V +V D+ T + K + F+ + + RS A
Sbjct: 34 DSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLA 93
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++NG + GR++RV V
Sbjct: 94 VDNLNGAQVLGRIIRVDHV 112
>gi|115456445|ref|NP_001051823.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|40714682|gb|AAR88588.1| putative RNA binding protein [Oryza sativa Japonica Group]
gi|108711961|gb|ABF99756.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711962|gb|ABF99757.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711963|gb|ABF99758.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|108711964|gb|ABF99759.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113550294|dbj|BAF13737.1| Os03g0836200 [Oryza sativa Japonica Group]
gi|125546344|gb|EAY92483.1| hypothetical protein OsI_14220 [Oryza sativa Indica Group]
gi|125588547|gb|EAZ29211.1| hypothetical protein OsJ_13272 [Oryza sativa Japonica Group]
gi|215695067|dbj|BAG90258.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215715212|dbj|BAG94963.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764998|dbj|BAG86695.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 205
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDA 96
+E ++G L +S ++S++ F K+G++ K+V D+ S R + +GFVTF ++ DA
Sbjct: 5 EEYRCFIGNLSWSTTDESLKDAFGKFGNLTEAKVVFDKYSGRSRGFGFVTFDEKKAMEDA 64
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDR 140
I MNG +DGR + V + +G GRD R+G R RDR
Sbjct: 65 IEGMNGLDLDGRAITVDKAQPQG----PGRD--RNGDRDYDRDR 102
>gi|22478042|gb|AAH36719.1| Cstf2 protein [Mus musculus]
Length = 510
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|12230585|sp|Q08937.1|ROC2_NICSY RecName: Full=29 kDa ribonucleoprotein B, chloroplastic; AltName:
Full=CP29B; Flags: Precursor
gi|14135|emb|CAA43428.1| 29kD B ribonucleoprotein [Nicotiana sylvestris]
Length = 291
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSA 93
++D + VYVG L + ++ +++++F + G+VV K+V DR S R + +GFVT+ + +
Sbjct: 202 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKEV 261
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRK 121
DAI+ +NG +DGR +RVS R R+
Sbjct: 262 NDAIDSLNGVDLDGRSIRVSAAEERPRR 289
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VG LP+S + ++ +F++ G+V V+++ D+ T R + +GFVT A
Sbjct: 89 LFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQF 148
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNN 143
NG IDGR +RV+ ++ NS R G+ G RD N
Sbjct: 149 NGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGN 191
>gi|47225344|emb|CAG09844.1| unnamed protein product [Tetraodon nigroviridis]
Length = 570
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 27 SVFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 86
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 87 LNGREFSGRALRVDNAAS 104
>gi|296811816|ref|XP_002846246.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
gi|238843634|gb|EEQ33296.1| glycine-rich RNA-binding protein [Arthroderma otae CBS 113480]
Length = 133
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+++GGL + +D++R F K+G++ +V DR T R + +GFV F N A A+N M
Sbjct: 6 LFIGGLAWHTTDDTLRDGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSNESEADAALNAM 65
Query: 101 NGRTIDGRVVRVSEVATR 118
N + DGRV+RV + R
Sbjct: 66 NNQEFDGRVIRVDKATER 83
>gi|148688462|gb|EDL20409.1| cleavage stimulation factor, 3' pre-RNA subunit 2 [Mus musculus]
Length = 363
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>gi|224069480|ref|XP_002326357.1| predicted protein [Populus trichocarpa]
gi|222833550|gb|EEE72027.1| predicted protein [Populus trichocarpa]
Length = 286
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSA 93
T D + VYVG L ++ ++ ++ +F + G V+ K+V DR S R K +GFVT+ +
Sbjct: 197 TFDSSNRVYVGNLSWNVDDSALESLFREKGKVMDAKVVYDRDSGRSKGFGFVTYSSAEEV 256
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRK 121
DA++ +NG +DGR +RVS + R+
Sbjct: 257 EDAVDSLNGAELDGRAIRVSVAEAKPRR 284
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VG LP++ N + +F G+V V++ D+ T R + +GFVT A
Sbjct: 93 LFVGNLPFNVNSAQLADLFKSAGNVEMVEVKYDKVTGRSRGFGFVTMSTIEEVEAASQQF 152
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGR-----DQFRHGHRHKGRDRDNNRHR 146
NG +DGR +RV+ R+++ R + F G +G + ++ +R
Sbjct: 153 NGYELDGRPLRVNSGPPPQRETSFSRLPQRENSFSRGPGARGGETFDSSNR 203
>gi|296411281|ref|XP_002835362.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629140|emb|CAZ79519.1| unnamed protein product [Tuber melanosporum]
Length = 322
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VY+GGLPY +E + +F ++G V V ++ D+ T + K + F+ + + RS A
Sbjct: 31 DTAYVYIGGLPYELSEGDIITIFSQFGEPVHVNLIRDKDTGKSKGFAFLKYEDQRSTNLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G TI GR++RV
Sbjct: 91 VDNLGGATILGRIIRV 106
>gi|238014210|gb|ACR38140.1| unknown [Zea mays]
gi|414873814|tpg|DAA52371.1| TPA: glycine-rich RNA-binding protein 8 isoform 1 [Zea mays]
gi|414873815|tpg|DAA52372.1| TPA: glycine-rich RNA-binding protein 8 isoform 2 [Zea mays]
gi|414873816|tpg|DAA52373.1| TPA: glycine-rich RNA-binding protein 8 isoform 3 [Zea mays]
Length = 205
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 7/112 (6%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDA 96
DE ++G L +S ++S++ F K+G++ K+V D+ S R + +GFVTF ++ DA
Sbjct: 5 DEYRCFIGNLSWSTTDESLKDAFSKFGNLTEAKVVLDKFSGRSRGFGFVTFDEKQAMEDA 64
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDR 148
I MNG +DGR + V + +G GRD R+G R R+R + R R
Sbjct: 65 IEGMNGLDLDGRNITVDKAQPQG----PGRD--RNGDRDYDRERGSRYERGR 110
>gi|407039318|gb|EKE39578.1| RNA recognition motif (RRM, RBD, or RNP domain) containing protein
[Entamoeba nuttalli P19]
Length = 199
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
VYVG L + ++D +++VF G + ++ + K +GFVTF + +A A+N+MN
Sbjct: 6 VYVGNLSLNTDKDKLKEVFASVGEIKNSRVATHKDGASKGFGFVTFNDEETAEKAVNEMN 65
Query: 102 GRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRH 135
G+ IDG +V V + RK RD +R +RH
Sbjct: 66 GKEIDGSIVVVQISRPQDRKR---RDHYRSSYRH 96
>gi|20257689|gb|AAM16010.1| glycine-rich RNA binding protein [Zea mays]
Length = 147
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF +
Sbjct: 7 DVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRS 66
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 67 AIEGMNGKELDGRNITVNEA 86
>gi|124268989|ref|YP_001022993.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
gi|124261764|gb|ABM96758.1| RNA-binding region RNP-1 [Methylibium petroleiphilum PM1]
Length = 162
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG L YS +D +++ F ++G+V + K++ DR T R K +GFV G+ A AI M
Sbjct: 5 LYVGNLAYSVRDDDLQQAFGEFGAVTSAKVMMDRDTGRSKGFGFVEMGSDAEAQAAIEGM 64
Query: 101 NGRTIDGRVVRVSEVATR 118
NG+++ GR + V+E R
Sbjct: 65 NGQSLSGRAIVVNEARPR 82
>gi|346321453|gb|EGX91052.1| RNA binding domain protein [Cordyceps militaris CM01]
Length = 323
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 15 IVVPIKARVIFNLIEERVKMTID--DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV 72
+ + + I N I D D + VY GGLPY +E V +F ++G V +K+V
Sbjct: 6 AIQALNKKEIENGISPEASWHTDYRDTAYVYFGGLPYELSEGDVITIFSQFGEPVFLKLV 65
Query: 73 NDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112
D+ S + K +G++ + N +S A++++ G + GR++RV
Sbjct: 66 RDKESGKSKGFGWLKYENQKSTDLAVDNLGGAQVGGRLLRV 106
>gi|296087572|emb|CBI34828.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
ER + +YVG LP+ ++ + +VF ++G VV ++V DR T R + +GFVT
Sbjct: 177 ERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMS 236
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSN 123
+ DAI ++G+++DGR +RV+ R R+ +
Sbjct: 237 SETELNDAIAALDGQSLDGRAIRVNVAEERPRRGS 271
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ ++VG LPY + + + ++FD+ G V +++ +R T + + +GF+T A A
Sbjct: 91 EEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKA 150
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
+ N ++GR + V++ A RG + F R
Sbjct: 151 VEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFR 188
>gi|168034546|ref|XP_001769773.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678882|gb|EDQ65335.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 134
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 65/116 (56%), Gaps = 12/116 (10%)
Query: 12 STSIVVPIKARVIFNLIEERVKMTIDDESSVYVG-GLPYSANEDSVRKVFDKYGSVVAVK 70
S ++ VP L+ +R+ S +++G GL ++ +E+++R F +G+V VK
Sbjct: 27 SAAVAVPAM------LVVQRMM----SSSKLFIGAGLAWATDENTLRDAFSSFGTVTEVK 76
Query: 71 IVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
I+ DR T R + +GFV F +P A A+ +M+GR + GR +RV + R++ G
Sbjct: 77 IILDRDTGRSRGFGFVNFTSPEEAEVALQEMDGRELAGRQIRVDYATDKARETRGG 132
>gi|237836905|ref|XP_002367750.1| U1 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211965414|gb|EEB00610.1| U1 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221482025|gb|EEE20391.1| U1 small nuclear ribonucleoprotein 70 kD, putative [Toxoplasma
gondii GT1]
gi|221505100|gb|EEE30754.1| RNA-binding protein, putative [Toxoplasma gondii VEG]
Length = 274
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%)
Query: 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRS 92
K+T D +++VGG+ Y E +++ F++YGS+ V+++ DR+ + + YGF+ F N R
Sbjct: 91 KLTGDPFRTLFVGGISYDTTEKKLKREFEQYGSIKRVRLIYDRNGKPRGYGFIEFENDRD 150
Query: 93 AVDAINDMNGRTIDGRVVRV 112
+A + +G+ IDGR V V
Sbjct: 151 MKEAYKNADGKKIDGRRVLV 170
>gi|399886791|gb|AFP52931.1| RBP1 [Hordeum vulgare]
Length = 162
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VG L ++ ++ + F +G ++ KI+NDR T R + +GFV+F N ++ DAI MN
Sbjct: 12 FVGSLSWNTDDRGLEAAFSSFGEILDAKIINDRETGRSRGFGFVSFSNEQAMQDAIEGMN 71
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 72 GKELDGRSIVVNEA 85
>gi|389584381|dbj|GAB67113.1| U1 small nuclear ribonucleoprotein 70 kDa [Plasmodium cynomolgi
strain B]
Length = 494
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
+T D + ++++G L Y NE ++K F+ YG + VKI+ D++ + K Y F+ F + +S
Sbjct: 92 LTNDPKKTIFIGRLSYDVNEKKLKKEFEVYGKIKKVKIIYDKNFKPKGYAFIEFEHTKSF 151
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGR 120
DA N +G+ ID R + V RGR
Sbjct: 152 NDAYNLADGKKIDNRRILVD--VERGR 176
>gi|212275199|ref|NP_001130054.1| uncharacterized protein LOC100191146 [Zea mays]
gi|194688180|gb|ACF78174.1| unknown [Zea mays]
gi|414878270|tpg|DAA55401.1| TPA: glycine-rich RNA-binding protein 7 [Zea mays]
Length = 254
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
S ++VGG+ Y ++ S+R F KYG V+ +I+ DR S R + +GFVT+ + A AI
Sbjct: 30 SKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAIT 89
Query: 99 DMNGRTIDGRVVRV 112
++G+T+DGR +RV
Sbjct: 90 ALDGKTLDGRSIRV 103
>gi|347535511|ref|YP_004842936.1| putative RNA-binding protein RbpA [Flavobacterium branchiophilum
FL-15]
gi|345528669|emb|CCB68699.1| Putative RNA-binding protein RbpA [Flavobacterium branchiophilum
FL-15]
Length = 117
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VG LP+S E +++ F+ YG+V +VKI+ D+ T R K +GFV N A AI+++
Sbjct: 3 IFVGSLPFSIEEADLKESFEAYGAVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAIDEL 62
Query: 101 NGRTIDGRVVRV 112
NG T+ GR + V
Sbjct: 63 NGATVQGRAIVV 74
>gi|339501141|ref|YP_004699176.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
gi|338835490|gb|AEJ20668.1| RNP-1 like RNA-binding protein [Spirochaeta caldaria DSM 7334]
Length = 116
Score = 62.8 bits (151), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG L Y+ +EDS+R +F +GSV + KI+ DR T K +GFV A AI
Sbjct: 26 LYVGNLSYNTSEDSLRNLFSNFGSVASAKIIFDRETGNSKGFGFVEMSTDEEASAAIAGT 85
Query: 101 NGRTIDGRVVRVSEVATRGRK 121
NGR +GR +RV+E + R+
Sbjct: 86 NGREFEGRQLRVNEAMDKPRR 106
>gi|304376936|gb|ACI70007.2| Cold-inducible RNA-binding protein [Salmo salar]
Length = 82
Score = 62.8 bits (151), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE ++VGGL + E+S+ + F KYG++ V ++ D+ T R + +GFV + N A
Sbjct: 1 MSDEGKLFVGGLSFDTTEESLAEAFAKYGNIAKVDVIRDKETGRSRGFGFVKYDNAEDAK 60
Query: 95 DAINDMNGRTID 106
DA++ MNG+++D
Sbjct: 61 DALDGMNGKSVD 72
>gi|163916618|gb|AAI57793.1| LOC100135403 protein [Xenopus (Silurana) tropicalis]
Length = 375
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF KYG VV V ++ DR T + + + FVTF +P A D
Sbjct: 5 DRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKD 64
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
A ++NG+ +DG+ ++V E AT+
Sbjct: 65 AARELNGKALDGKPIKV-EQATK 86
>gi|115481496|ref|NP_001064341.1| Os10g0321700 [Oryza sativa Japonica Group]
gi|110288867|gb|ABG66004.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113638950|dbj|BAF26255.1| Os10g0321700 [Oryza sativa Japonica Group]
Length = 317
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%), Gaps = 1/75 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GG+ Y ++ S+++ F YG V+ +++ DR+T R + +GFVT+ + A AI
Sbjct: 31 SKLFIGGISYGTDDQSLKEAFANYGEVIEARVIVDRTTGRSRGFGFVTYTSTDEAAAAIT 90
Query: 99 DMNGRTIDGRVVRVS 113
M+G+ + GR+VRVS
Sbjct: 91 GMDGKDLQGRIVRVS 105
>gi|356498939|ref|XP_003518303.1| PREDICTED: zinc finger CCCH domain-containing protein 42-like
[Glycine max]
Length = 235
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + V+VGG+P+ E + VF +YG VV V +V D+ T + K + F+ + + RS A
Sbjct: 34 DSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTNLA 93
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++NG + GR++RV V
Sbjct: 94 VDNLNGAQVLGRIIRVDHV 112
>gi|365088445|ref|ZP_09327889.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
gi|363417101|gb|EHL24188.1| RNP-1 like RNA-binding protein [Acidovorax sp. NO-1]
Length = 111
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +YVG LPYS + S++ F ++G V + K++ DR T R K +GFV N A AI+
Sbjct: 3 SKIYVGNLPYSVTDASLQSNFSEFGGVSSAKVMMDRETGRSKGFGFVEMANAEVAQAAIS 62
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
++G ++DGR + V+ R +S++G
Sbjct: 63 GLHGMSVDGRTIVVNLARPREERSDAG 89
>gi|168037994|ref|XP_001771487.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677214|gb|EDQ63687.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 774
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRG-KCYGFVTFGNPRSAVD 95
DD++++YVG LP S +++ + ++F +G+V K++ DR T K YGFV F +P SA
Sbjct: 461 DDDANLYVGYLPSSVDDEGLARLFAPFGAVEHAKVIRDRLTGASKGYGFVKFSDPSSATA 520
Query: 96 AINDMNGRTIDGRVVRV 112
A+ NG ++GRV+ V
Sbjct: 521 AVTHRNGYRLEGRVLAV 537
>gi|308272084|emb|CBX28692.1| Glycine-rich RNA-binding protein 8 [uncultured Desulfobacterium
sp.]
Length = 127
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 1/75 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
+YVG L Y NED +R+ F++ G V +V I+ND+ S R K +GFV + A AI +
Sbjct: 3 IYVGNLSYEVNEDDLRQAFEQLGKVDSVSIINDKYSGRSKGFGFVEMSSDAEAQAAIEGL 62
Query: 101 NGRTIDGRVVRVSEV 115
NG+ + GR + V+E
Sbjct: 63 NGKELKGRAINVNEA 77
>gi|108744011|gb|ABG02278.1| heterogeneous nuclear ribonucleoprotein G [Haplochromis burtoni]
Length = 391
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL E ++ + F KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
DA +MNG+++DG+ ++V E AT+ + ++GR
Sbjct: 64 DAAREMNGKSLDGKPIKV-EQATKPQFESAGR 94
>gi|333379577|ref|ZP_08471298.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
gi|332884970|gb|EGK05223.1| hypothetical protein HMPREF9456_02893 [Dysgonomonas mossii DSM
22836]
Length = 99
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++++ GL Y N+ + F +YG + + K++ DRST R K YGFV N A AI+
Sbjct: 2 NIFIAGLSYDVNDADLNTFFKEYGVINSAKVIMDRSTSRSKGYGFVEMDNNEDANKAISK 61
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHK 136
+NG DGR + VSE R ++N+ R G+ ++
Sbjct: 62 LNGVEYDGRTISVSEARPRQERNNNSYGNNRGGYNNR 98
>gi|317029441|ref|XP_001391597.2| U2 snRNP component ist3 [Aspergillus niger CBS 513.88]
Length = 280
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLPY +E + +F +YG V + +V D+ T + + + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPYDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++ G T+ GRV+RV V
Sbjct: 91 VDNLGGATVLGRVLRVDHV 109
>gi|225452270|ref|XP_002270233.1| PREDICTED: 31 kDa ribonucleoprotein, chloroplastic-like [Vitis
vinifera]
Length = 312
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
ER + +YVG LP+ ++ + +VF ++G VV ++V DR T R + +GFVT
Sbjct: 217 ERPPQAFEPSFRIYVGNLPWQVDDARLEQVFSEHGKVVDARVVYDRDTQRSRGFGFVTMS 276
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSN 123
+ DAI ++G+++DGR +RV+ R R+ +
Sbjct: 277 SETELNDAIAALDGQSLDGRAIRVNVAEERPRRGS 311
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ ++VG LPY + + + ++FD+ G V +++ +R T + + +GF+T A A
Sbjct: 131 EEAKLFVGNLPYDIDSEKLAQLFDEAGVVEIAEVIYNRETDQSRGFGFITMSTVEEAEKA 190
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
+ N ++GR + V++ A RG + F R
Sbjct: 191 VEMFNRYDLNGRFLTVNKAAPRGSRPERPPQAFEPSFR 228
>gi|242279034|ref|YP_002991163.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
gi|242121928|gb|ACS79624.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
Length = 87
Score = 62.8 bits (151), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/79 (43%), Positives = 52/79 (65%), Gaps = 2/79 (2%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG LP+SA E+ VR F+ YG VV+VK++ DR T R + +GFV + A+DAI
Sbjct: 4 NIYVGNLPWSATEEDVRASFEAYGEVVSVKLIEDRETGRPRGFGFVEMDD-NGAIDAIEA 62
Query: 100 MNGRTIDGRVVRVSEVATR 118
++G+ GR ++V+E R
Sbjct: 63 LDGKDFGGRNLKVNEARPR 81
>gi|134076074|emb|CAK39433.1| unnamed protein product [Aspergillus niger]
Length = 289
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLPY +E + +F +YG V + +V D+ T + + + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPYDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++ G T+ GRV+RV V
Sbjct: 91 VDNLGGATVLGRVLRVDHV 109
>gi|374812290|ref|ZP_09716027.1| RNP-1 like RNA-binding protein [Treponema primitia ZAS-1]
Length = 99
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG L Y+ ED +R +F ++GSV + KI+ DR T K +GF+ G A AI
Sbjct: 5 LYVGNLSYNTTEDGLRNLFSEFGSVASSKIIFDRETGNSKGFGFIEMGTDEEASAAIAGT 64
Query: 101 NGRTIDGRVVRVSEVATRGRK 121
NGR DGR +RV+E + R+
Sbjct: 65 NGREFDGRQLRVNEAMDKPRR 85
>gi|395329428|gb|EJF61815.1| hypothetical protein DICSQDRAFT_154995 [Dichomitus squalens
LYAD-421 SS1]
Length = 374
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 67/126 (53%), Gaps = 11/126 (8%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
V+VG +PY+ ED + VF G VV +++V DR T + K YGF F + +A A+ ++
Sbjct: 5 VFVGNVPYNMAEDQLIDVFKSVGQVVGLRLVFDRDTGKPKGYGFCEFADHETAASAVRNL 64
Query: 101 NGRTIDGRVVRV----SEVATRGRKSNSGRDQFRHGHRHKGRDRDNN---RH-RDRYQDR 152
NG I GR +R+ S+ G+ + G + G + + R+ N RH RDRY D
Sbjct: 65 NGYEIGGRPLRIDLADSDPFLEGKTTVRG--EIIDGGETRAQWRERNERERHDRDRYGDH 122
Query: 153 YNDRSR 158
++ R
Sbjct: 123 HDRLGR 128
>gi|350538255|ref|NP_001232562.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
gi|197128621|gb|ACH45119.1| putative cold inducible RNA binding protein variant 1 [Taeniopygia
guttata]
Length = 171
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDR 156
+ MNG+++DGR +RV + G+ S + +R G R R R R
Sbjct: 64 MMAMNGKSVDGRQIRVDQA---GKSSENRSRGYRGGSSEGRGFFRGGRGRGRGFSRGGGD 120
Query: 157 SRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTR 207
S D R + SRD ++ QG + N G R
Sbjct: 121 RGYGGSRFDS-----------RSGGYNGSRDYYNSRSQGGYGDRNSGGSYR 160
>gi|321262344|ref|XP_003195891.1| hypothetical protein CGB_H5040W [Cryptococcus gattii WM276]
gi|317462365|gb|ADV24104.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 401
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +YVGGLP+ E + +F ++G ++ V +V D+ T + + +GF+ + + RS V A
Sbjct: 29 DSAYIYVGGLPFELTEGDLITIFSQWGEIMDVNLVRDKETGKSRGFGFLMYEDQRSTVLA 88
Query: 97 INDMNGRTIDGRVVRV 112
+++MNG + GR ++V
Sbjct: 89 VDNMNGTQVMGRTLKV 104
>gi|294464377|gb|ADE77701.1| unknown [Picea sitchensis]
Length = 299
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 53/85 (62%), Gaps = 1/85 (1%)
Query: 29 EERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTF 87
E+R + D + VY+G L + NE+ + +VF ++G+++ KIV DR T R + +GF+TF
Sbjct: 205 EQRNQTNNDGQHRVYIGNLSWDVNEEILNEVFSEHGNLLDAKIVFDRETGRSRGFGFITF 264
Query: 88 GNPRSAVDAINDMNGRTIDGRVVRV 112
A A+ +NG+ ++GR +RV
Sbjct: 265 STQSEAEAAVASLNGKELEGRAMRV 289
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
I + VY+G LP+S + + + ++GSV V+++ D++T R + + F T + A
Sbjct: 107 IPAGTKVYLGNLPFSCDSAELAGIIQEHGSVEMVEVIYDQNTGRSRGFAFATMSSVEDAN 166
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNN--RHR 146
+ +++G GR +RV+ R S S R R R + R++ NN +HR
Sbjct: 167 ALVENLDGSQYGGRTLRVN---LREEASRSLRVNLRDKSRSEQRNQTNNDGQHR 217
>gi|296273514|ref|YP_003656145.1| RNP-1 like RNA-binding protein [Arcobacter nitrofigilis DSM 7299]
gi|296097688|gb|ADG93638.1| RNP-1 like RNA-binding protein [Arcobacter nitrofigilis DSM 7299]
Length = 92
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG + Y E+ + +F +YG V +VK++ DR T R K +GFV + +A+ AI ++
Sbjct: 3 IYVGNMSYGTTEEGLTTLFSQYGEVSSVKLITDRDTGRAKGFGFVAMNDDSAALKAIEEL 62
Query: 101 NGRTIDGRVVRVSEVATRGRK 121
NG+ DGR +R++E + K
Sbjct: 63 NGKEYDGRTLRINEAKPKEEK 83
>gi|198282085|ref|NP_001105572.1| glycine-rich RNA binding protein [Zea mays]
gi|2668742|gb|AAB88616.1| glycine-rich RNA binding protein [Zea mays]
gi|194692162|gb|ACF80165.1| unknown [Zea mays]
gi|195623052|gb|ACG33356.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 145
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF +
Sbjct: 5 DVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRS 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|195618802|gb|ACG31231.1| glycine-rich RNA-binding protein 2 [Zea mays]
gi|195625478|gb|ACG34569.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF +
Sbjct: 5 DVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRS 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|67473916|ref|XP_652707.1| splicing factor, arginine/serine-rich [Entamoeba histolytica
HM-1:IMSS]
gi|56469586|gb|EAL47321.1| splicing factor, arginine/serine-rich, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449706789|gb|EMD46560.1| RNAbinding region RNP-1, putative [Entamoeba histolytica KU27]
Length = 199
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
VYVG L + ++D +++VF G + ++ + K +GFVTF + +A A+N+MN
Sbjct: 6 VYVGNLSLNTDKDKLKEVFASVGEIKNSRVATHKDGASKGFGFVTFNDEETAEKAVNEMN 65
Query: 102 GRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRH 135
G+ IDG +V V + RK RD +R +RH
Sbjct: 66 GKEIDGSIVVVQISRPQDRKR---RDHYRSSYRH 96
>gi|426258338|ref|XP_004022771.1| PREDICTED: RNA-binding motif protein, X-linked 2-like [Ovis aries]
Length = 461
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 11/108 (10%)
Query: 20 KARVIFNLIEERVKMTI----------DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV 69
K ++I L E V++ + D + +++GGLPY E + VF +YG +V +
Sbjct: 104 KVKLINELNEREVQLGVAEKVSWHNEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNI 163
Query: 70 KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 164 NLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 211
>gi|291286869|ref|YP_003503685.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
gi|290884029|gb|ADD67729.1| RNP-1 like RNA-binding protein [Denitrovibrio acetiphilus DSM
12809]
Length = 89
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG L YS NED + +F K G V +V+I+ DR T R K +GFV N A AI+
Sbjct: 2 NIYVGNLSYSTNEDDISALFSKIGEVDSVRIITDRDTGRSKGFGFVEMANSDQAKAAIDK 61
Query: 100 MNGRTIDGRVVRVSEV 115
+N +DGR + V+E
Sbjct: 62 LNETELDGRNLTVNEA 77
>gi|20257697|gb|AAM16014.1| glycine-rich RNA binding protein [Zea mays]
Length = 148
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF
Sbjct: 8 DVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSXXXXXRS 67
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 68 AIEGMNGKELDGRNITVNEA 87
>gi|2625130|gb|AAB86639.1| heterogeneous nuclear ribonucleoprotein G [Mus musculus]
Length = 388
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V + ++ DR T + + + FVT +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|145341802|ref|XP_001415992.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576215|gb|ABO94284.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 86
Score = 62.4 bits (150), Expect = 4e-07, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +V++G +PY A E S+R VF + G V +++V DR T + K YGFV F + +A+ A+
Sbjct: 3 EGTVFIGNIPYDATETSLRDVFGEVGPVRELRLVADRDTGKLKGYGFVEFDDYATAMSAV 62
Query: 98 NDMNGRTIDGRVVRVSEVAT 117
++NGR +GR +RV T
Sbjct: 63 RNVNGREYNGRQLRVDHAET 82
>gi|440912647|gb|ELR62200.1| Heterogeneous nuclear ribonucleoprotein G, partial [Bos grunniens
mutus]
Length = 206
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL +E S+ F KYG + V ++ DR T + + + F+TF +P A
Sbjct: 4 ADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
A+ DMNG+++DG+ ++V++
Sbjct: 64 AAVRDMNGKSLDGKAIKVAQA 84
>gi|226506948|ref|NP_001149776.1| glycine-rich RNA-binding protein 7 [Zea mays]
gi|195633803|gb|ACG36746.1| glycine-rich RNA-binding protein 7 [Zea mays]
Length = 276
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIN 98
S ++VGG+ Y ++ S+R F KYG V+ +I+ DR S R + +GFVT+ + A AI
Sbjct: 30 SKLFVGGISYQTDDHSLRDEFAKYGQVIEARIIIDRESGRSRGFGFVTYTSSEEASAAIT 89
Query: 99 DMNGRTIDGRVVRV 112
++G+T+DGR +RV
Sbjct: 90 ALDGKTLDGRSIRV 103
>gi|111162637|gb|ABH07505.1| glycine-rich RNA-binding protein [Nicotiana attenuata]
Length = 152
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ + ++ F ++G ++ KI+NDR T R + +GFVTF + ++ DAI
Sbjct: 5 EYRCFVGGLAWATTDQTLGDAFSQFGEILDSKIINDRETGRSRGFGFVTFKDEKAMRDAI 64
Query: 98 NDMNGRTIDGRVVRVSEV 115
M G+ +DGR + V+E
Sbjct: 65 EGMKGQDLDGRNITVNEA 82
>gi|224121390|ref|XP_002318570.1| predicted protein [Populus trichocarpa]
gi|222859243|gb|EEE96790.1| predicted protein [Populus trichocarpa]
Length = 255
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S ++VGG+ + +++S+++ FDKYG+VV +I+ DR T R + +GFVT+ + A AI
Sbjct: 40 SKLFVGGISFQTDDNSLKEAFDKYGNVVEARIIMDRETGRSRGFGFVTYTSSEEASSAIQ 99
Query: 99 DMNGRTIDGRVVRVSEVATR 118
++G+ + GR VRV+ R
Sbjct: 100 ALDGQDLHGRRVRVNYATER 119
>gi|194693774|gb|ACF80971.1| unknown [Zea mays]
Length = 133
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF +
Sbjct: 5 DVEYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRS 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|58271546|ref|XP_572929.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115110|ref|XP_773853.1| hypothetical protein CNBH3050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256481|gb|EAL19206.1| hypothetical protein CNBH3050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229188|gb|AAW45622.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +YVGGLP+ E + +F ++G ++ V +V D+ T + + +GF+ + + RS V A
Sbjct: 29 DSAYIYVGGLPFELTEGDLITIFSQWGEIMDVNLVRDKETGKSRGFGFLMYEDQRSTVLA 88
Query: 97 INDMNGRTIDGRVVRV 112
+++MNG + GR ++V
Sbjct: 89 VDNMNGTQVIGRTLKV 104
>gi|303282607|ref|XP_003060595.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458066|gb|EEH55364.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 314
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAINDM 100
VYVGGL +S + D++R+ F YG V+ ++ D R K YGFV+F AVDA++D+
Sbjct: 10 VYVGGLKFSTDSDALREYFSSYGKVLGARVAWDHDRRQSKGYGFVSFAKTEDAVDAVDDI 69
Query: 101 NGRTIDGRVVRV 112
IDG +V
Sbjct: 70 RPAVIDGWRCKV 81
>gi|367020140|ref|XP_003659355.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
gi|347006622|gb|AEO54110.1| hypothetical protein MYCTH_2296269 [Myceliophthora thermophila ATCC
42464]
Length = 534
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 2/79 (2%)
Query: 36 IDDES-SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSA 93
I ES +++VG LP+SA+EDSV K F+K V +++I D+ S R K + +VTF + A
Sbjct: 396 ISPESDTLFVGNLPFSADEDSVSKFFNKAAKVQSLRIPTDQESGRPKGFAYVTFSSVEDA 455
Query: 94 VDAINDMNGRTIDGRVVRV 112
A +NG +DGR VR+
Sbjct: 456 KKAFETLNGSDLDGRPVRL 474
>gi|452851769|ref|YP_007493453.1| putative RNA-binding protein rbpE [Desulfovibrio piezophilus]
gi|451895423|emb|CCH48302.1| putative RNA-binding protein rbpE [Desulfovibrio piezophilus]
Length = 87
Score = 62.4 bits (150), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/79 (40%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG LP+S+ E+ VR F+ YG V +VK++NDR T R + +GFV + + A++AI +
Sbjct: 4 NIYVGNLPWSSTEEDVRATFEAYGEVYSVKLINDRETGRPRGFGFVEMED-QGALEAIEN 62
Query: 100 MNGRTIDGRVVRVSEVATR 118
++G+ GR ++V+E R
Sbjct: 63 LDGKDFGGRNLKVNEARPR 81
>gi|402860841|ref|XP_003894827.1| PREDICTED: RNA-binding motif protein, X chromosome-like [Papio
anubis]
Length = 391
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS-TRGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ D+ + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDQKINKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>gi|242790685|ref|XP_002481602.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
gi|218718190|gb|EED17610.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
Length = 285
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLP+ +E + +F +YG V V +V D+ T + K + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPFDLSEGDIVTIFSQYGEPVHVNLVRDKDTGKSKGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G T+ GRV+RV
Sbjct: 91 VDNLGGATVMGRVLRV 106
>gi|88813641|ref|ZP_01128871.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
gi|88789097|gb|EAR20234.1| RNA-binding protein [Nitrococcus mobilis Nb-231]
Length = 96
Score = 62.4 bits (150), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/94 (40%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
S+YVG LP++A+ED +R +F +YG V V+++ DR T R + +GFV P A AI
Sbjct: 4 SIYVGNLPFTASEDEIRDLFAQYGEVNEVRLITDRDTGRPRGFGFVRMA-PADADAAIEA 62
Query: 100 MNGRTIDGRVVRVSEVATRG--RKSNSGRDQFRH 131
+NG +DGR +R++E R R GR R+
Sbjct: 63 LNGTELDGRALRINEAQERQERRPRQPGRGPRRY 96
>gi|297795791|ref|XP_002865780.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
gi|297311615|gb|EFH42039.1| hypothetical protein ARALYDRAFT_918033 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG LP+ + D +++VF ++G VV ++V DR T R + +GFVT N DAI +
Sbjct: 209 IYVGNLPWDVDNDRLQQVFSEHGKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIAAL 268
Query: 101 NGRTIDGRVVRVSEVATRGRK 121
+G+ ++GR ++V+ R R+
Sbjct: 269 DGQNLEGRAIKVNVAEERPRR 289
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ ++VG LPY + ++ +F++ G+V +++ +R T + + +GFVT A A
Sbjct: 111 EEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAKKA 170
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDR 156
+ N ++GR++ V+ A RG + Q+ R + + DR Q +++
Sbjct: 171 VEKFNRYEVNGRLLTVNIAAPRGSRPERQPRQYDAAFRIYVGNLPWDVDNDRLQQVFSEH 230
Query: 157 SR--ERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLE 199
+ + DR+ G R + V + + D + D G++LE
Sbjct: 231 GKVVDARVVYDRETGRSRGFGFVTMSNENEVNDAIAALD-GQNLE 274
>gi|148684912|gb|EDL16859.1| mCG120440 [Mus musculus]
Length = 366
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL +E + F KYG ++ V ++ DR T + + + FVTF NP A
Sbjct: 35 ADRPGKLFIGGLNLETDEKGLETAFGKYGRIIEVLLMKDRETSKSRGFAFVTFENPADAK 94
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V++
Sbjct: 95 AAARDMNGKSLDGKAIKVAQA 115
>gi|401405687|ref|XP_003882293.1| hypothetical protein NCLIV_020480 [Neospora caninum Liverpool]
gi|325116708|emb|CBZ52261.1| hypothetical protein NCLIV_020480 [Neospora caninum Liverpool]
Length = 260
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%)
Query: 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRS 92
K+T D +++V G+ Y E +++ FD+YGS+ V+++ DR+ + + YGF+ F N R
Sbjct: 91 KLTGDPFRTLFVAGISYDTTEKKLKREFDQYGSIKRVRLIYDRNGKPRGYGFIEFENDRD 150
Query: 93 AVDAINDMNGRTIDGRVVRV 112
+A + +G+ IDGR V V
Sbjct: 151 MKEAYKNADGKKIDGRRVLV 170
>gi|395802857|ref|ZP_10482109.1| RNP-1 like RNA-binding protein [Flavobacterium sp. F52]
gi|395435298|gb|EJG01240.1| RNP-1 like RNA-binding protein [Flavobacterium sp. F52]
Length = 114
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
+++VG LP+S E +R+ F+ YG+V +VKI+ D+ T R K +GFV N A AI++
Sbjct: 2 NIFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAIDE 61
Query: 100 MNGRTIDGRVVRVS 113
+NG + GR + V+
Sbjct: 62 LNGAVVSGRTIVVN 75
>gi|224104290|ref|XP_002313385.1| predicted protein [Populus trichocarpa]
gi|222849793|gb|EEE87340.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + V+VGG+P+ E + VF +YG VV +V D+ T + K + F+ + + RS A
Sbjct: 34 DSAYVFVGGIPFDLTEGDLLAVFAQYGEVVDANLVRDKGTGKSKGFAFIAYEDQRSTNLA 93
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++NG + GR++RV V
Sbjct: 94 VDNLNGAQVLGRIIRVDHV 112
>gi|367034235|ref|XP_003666400.1| hypothetical protein MYCTH_2311045 [Myceliophthora thermophila ATCC
42464]
gi|347013672|gb|AEO61155.1| hypothetical protein MYCTH_2311045 [Myceliophthora thermophila ATCC
42464]
Length = 347
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y GGLPY E V +F ++G V +K+V D+ T + K +G++ + + RS A
Sbjct: 31 DTAFIYFGGLPYELTEGDVITIFSQFGEPVFLKLVRDKETGKSKGFGWLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEVATRGR 120
++++ G I GR++RV + R
Sbjct: 91 VDNLGGAEIGGRLIRVDHARYKAR 114
>gi|194385376|dbj|BAG65065.1| unnamed protein product [Homo sapiens]
Length = 142
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRT 104
+ MNG+
Sbjct: 64 MMAMNGKV 71
>gi|358396474|gb|EHK45855.1| hypothetical protein TRIATDRAFT_283470 [Trichoderma atroviride IMI
206040]
Length = 332
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 16 VVPIKARVIFNLIEERVKMTID--DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVN 73
+ + + I N I +D D + VY GGLPY +E + +F ++G V +K+V
Sbjct: 7 IQALNKKEIENGISPDASWHVDYRDTAFVYFGGLPYELSEGDIATIFSQFGEPVFLKLVR 66
Query: 74 DRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112
D+ T + K +G++ + + RS A++++ G I GR++RV
Sbjct: 67 DKETGKSKGFGWLKYEDQRSTDLAVDNLGGAEIGGRLLRV 106
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
+++YV LP +E ++ +F ++G +++VK++ D S R +C+GFV F A A+
Sbjct: 191 TNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDNSGRSRCFGFVNFEKHEEAQKAVVH 250
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
MNG+ + GR++ S R + N + +F
Sbjct: 251 MNGKEVSGRLLYASRAQKRVERQNELKRKF 280
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+YV L S ++D +RK F YG + + K++ + S K +GFV F +P A A+ +MN
Sbjct: 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGS-HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 102 GRTIDGRVVRVS 113
GR + + + V+
Sbjct: 355 GRIVGTKPLYVA 366
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+S+YVG L E + + F GS++++++ D +T R Y ++ F P A A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 99 DMNGRTIDGRVVRV 112
MN + G+ +R+
Sbjct: 71 TMNFEMLKGQPIRI 84
Score = 39.7 bits (91), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
+++ L S + ++ F +G++++ K+ D+ +RG +GFV F +A AIN M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDKHGSRG--FGFVHFETHEAAQQAINTM 158
Query: 101 NGRTIDGRVVRVSEVATR 118
NG ++ R V V +R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
>gi|226286984|gb|EEH42497.1| RNA binding domain-containing protein [Paracoccidioides
brasiliensis Pb18]
Length = 280
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+G LPY +E + +F +YG V + +V D+ T + K + F+ + + RS A
Sbjct: 31 DTAYIYIGSLPYDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++ G TI GR++RV V
Sbjct: 91 VDNLGGATILGRMIRVDHV 109
>gi|20257673|gb|AAM16002.1| glycine-rich RNA binding protein [Zea mays]
Length = 139
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF + AI
Sbjct: 1 EYRCFVGGLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRSAI 60
Query: 98 NDMNGRTIDGRVVRVSEV 115
MNG+ +DGR + V+E
Sbjct: 61 EGMNGKELDGRNITVNEA 78
>gi|225683370|gb|EEH21654.1| U2 snRNP component IST3 [Paracoccidioides brasiliensis Pb03]
Length = 280
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+G LPY +E + +F +YG V + +V D+ T + K + F+ + + RS A
Sbjct: 31 DTAYIYIGSLPYDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++ G TI GR++RV V
Sbjct: 91 VDNLGGATILGRMIRVDHV 109
>gi|194336480|ref|YP_002018274.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
gi|194308957|gb|ACF43657.1| RNP-1 like RNA-binding protein [Pelodictyon phaeoclathratiforme
BU-1]
Length = 95
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIND 99
++Y+G L Y+ +ED +R F ++G V I+ND+ S R K +GFV A +AI
Sbjct: 2 NIYIGNLAYTVSEDDLRDAFSEFGEVANASIINDKFSGRSKGFGFVEMPKDSEAREAIES 61
Query: 100 MNGRTIDGRVVRVSEV 115
MNG+ ++GR V V+E
Sbjct: 62 MNGKDLNGRTVTVNEA 77
>gi|358368597|dbj|GAA85213.1| RNA binding domain protein [Aspergillus kawachii IFO 4308]
Length = 289
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 5/81 (6%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAV 94
D + +Y+GGLPY +E + +F +YG V + +V D+ T RG C F+ + + RS
Sbjct: 31 DTAYIYIGGLPYDLSEGDIITIFSQYGEPVHINLVRDKETGKSRGFC--FLKYEDQRSTD 88
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
A++++ G T+ GRV+RV V
Sbjct: 89 LAVDNLGGATVLGRVLRVDHV 109
>gi|146299063|ref|YP_001193654.1| RNP-1 like RNA-binding protein [Flavobacterium johnsoniae UW101]
gi|146153481|gb|ABQ04335.1| RNP-1 like RNA-binding protein [Flavobacterium johnsoniae UW101]
Length = 114
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
+++VG LP+S E +R+ F+ YG+V +VKI+ D+ T R K +GFV N A AI++
Sbjct: 2 NIFVGSLPFSIEEADLRESFEAYGTVDSVKIITDKFTGRSKGFGFVEMPNDSEAQKAIDE 61
Query: 100 MNGRTIDGRVVRVS 113
+NG + GR + V+
Sbjct: 62 LNGAVVSGRTIVVN 75
>gi|258564224|ref|XP_002582857.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908364|gb|EEP82765.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 146
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 12/104 (11%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GGL + ++++R+ F KYG++ +V DR T R + +GFV F + A A+N
Sbjct: 2 SKLFIGGLAWHTTDETLREGFSKYGTIEEAIVVKDRDTNRSRGFGFVRFASEAEADAAMN 61
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDN 142
M+ + DGR++RV + A R + G R +G R N
Sbjct: 62 AMSNQEFDGRMIRVDKAADR-----------QPGQRSEGFSRSN 94
>gi|227206222|dbj|BAH57166.1| AT2G21660 [Arabidopsis thaliana]
Length = 99
Score = 61.6 bits (148), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ F +YG V+ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 96 AINDMNGRTIDGRVV 110
AI MNG+ +DGR +
Sbjct: 65 AIEGMNGQDLDGRSI 79
>gi|115398724|ref|XP_001214951.1| U2 snRNP component IST3 [Aspergillus terreus NIH2624]
gi|114191834|gb|EAU33534.1| U2 snRNP component IST3 [Aspergillus terreus NIH2624]
Length = 292
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLPY +E V +F +YG V V +V D+ T + + + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPYDLSEGDVVTIFSQYGEPVHVNLVRDKETGKSRGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++ G T+ GR++RV V
Sbjct: 91 VDNLGGATVLGRMLRVDHV 109
>gi|346977782|gb|EGY21234.1| RNA-binding motif protein [Verticillium dahliae VdLs.17]
Length = 333
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 24 IFNLIEERVKMTID--DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGK 80
I N I +D D + +Y GGLPY +E V +F ++G V +K+ D+ T + K
Sbjct: 15 IENGISPEASWHVDYRDTAFIYFGGLPYEMSEGDVITIFSQFGEPVWLKLARDKETGKAK 74
Query: 81 CYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112
+G++ + + RS A++++ G TI R+VRV
Sbjct: 75 GFGWLKYEDQRSTDLAVDNLGGATIGSRMVRV 106
>gi|147838354|emb|CAN61133.1| hypothetical protein VITISV_039575 [Vitis vinifera]
Length = 1122
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
ER + +YVG LP+ + + +VF ++G VV ++V DR T R + +GFVT
Sbjct: 1027 ERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEHGKVVEARVVFDRETGRSRGFGFVTMS 1086
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKS 122
+ DAI +G+T+DGR +RV+ R R+S
Sbjct: 1087 SQTELEDAIAATDGQTLDGRTIRVNVAEERPRRS 1120
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ V+VG LPY + + + ++F++ G V +++ +R T R + +GFV+ A A
Sbjct: 941 EEAKVFVGNLPYDVDSERLARLFEQAGVVEIAEVIYNRETDRSRGFGFVSMSTVEEAEKA 1000
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDR 156
++ + +DGR++ V++ A RG + F R + + R + +++
Sbjct: 1001 VDMFHRYELDGRLLTVNKAAPRGSQPERPPRVFEPAFRMYVGNLPWDVDSARLEQVFSEH 1060
Query: 157 SR--ERTSSQDRDKGMGREYEHV 177
+ E DR+ G R + V
Sbjct: 1061 GKVVEARVVFDRETGRSRGFGFV 1083
>gi|374812572|ref|ZP_09716309.1| RNA-binding protein [Treponema primitia ZAS-1]
Length = 90
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG L Y+ +ED++R +F +G+V +VKI+ DR T K +GFV A AI+
Sbjct: 5 LYVGNLSYNTHEDNLRSLFSAFGTVESVKIITDRDTGNSKGFGFVEMSTDAEAQAAISGT 64
Query: 101 NGRTIDGRVVRVSEVATRGRK 121
N +DGR ++V+E + R+
Sbjct: 65 NSTDLDGRAIKVNEAMDKPRR 85
>gi|85116496|ref|XP_965061.1| hypothetical protein NCU02467 [Neurospora crassa OR74A]
gi|28926863|gb|EAA35825.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|38567120|emb|CAE76416.1| conserved hypothetical protein [Neurospora crassa]
Length = 395
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 16 VVPIKARVIFNLIEERVKMTID--DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVN 73
+ + R I I +D D + VY GGLPY +E V +F ++G V +K+V
Sbjct: 7 IQALNKREIEAGIPPEASWHVDYRDTAFVYFGGLPYDLSEGDVITIFSQFGEPVFLKLVR 66
Query: 74 DRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112
D+ T + K +G++ + + RS A++++ G I GR++RV
Sbjct: 67 DKETGKSKGFGWLKYEDQRSTDLAVDNLGGAEIGGRLIRV 106
>gi|440894096|gb|ELR46645.1| Scaffold attachment factor B1, partial [Bos grunniens mutus]
Length = 522
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V RS +CYGFVT A IN ++
Sbjct: 344 WVSGLSSTTRAADLKNLFSKYGKVVGAKVVTSARSPGARCYGFVTMSTVEEATKCINHLH 403
Query: 102 GRTIDGRVVRVSEV--ATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYND 155
+ G+++ V +V G+KS+ R+ + DR N R+ DR +D
Sbjct: 404 KTELHGKMISVEKVINEPAGKKSSERREGEGKKEKSSNTDRSANLKREEKADRKDD 459
>gi|167386187|ref|XP_001737654.1| splicing factor, arginine/serine-rich [Entamoeba dispar SAW760]
gi|165899464|gb|EDR26052.1| splicing factor, arginine/serine-rich, putative [Entamoeba dispar
SAW760]
Length = 199
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
VYVG L S ++D +++ F G + ++ + K +GFVTF + +A A+N+MN
Sbjct: 6 VYVGNLSLSTDKDKLKEAFVSVGEIKNSRVATHKDGASKGFGFVTFNDEETAEKAVNEMN 65
Query: 102 GRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRH 135
G+ IDG +V V + RK RD +R +RH
Sbjct: 66 GKEIDGSIVVVQISRPQDRKR---RDHYRSSYRH 96
>gi|242823058|ref|XP_002488014.1| glycine-rich RNA-binding protein, putative [Talaromyces stipitatus
ATCC 10500]
gi|218712935|gb|EED12360.1| glycine-rich RNA-binding protein, putative [Talaromyces stipitatus
ATCC 10500]
Length = 134
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GGL + +D++R+ F+K+G++ ++ DR T R + +GFV F A AI+
Sbjct: 2 SKLFIGGLAWHTTDDTLRQGFEKFGTIEEAIVIKDRDTNRSRGFGFVRFATDAEADAAID 61
Query: 99 DMNGRTIDGRVVRV 112
MN + DGRV+RV
Sbjct: 62 GMNNQEFDGRVIRV 75
>gi|357122439|ref|XP_003562923.1| PREDICTED: uncharacterized protein LOC100844345 [Brachypodium
distachyon]
Length = 206
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 17/123 (13%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDA 96
DE ++G L +S ++S++ F K+G+V K+V D+ S R + + FVTF + A
Sbjct: 5 DEYRCFIGNLSWSTTDESLKDAFRKFGNVTEAKVVLDKFSGRSRGFAFVTFDEKKDMEAA 64
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDR 156
I DMNG +DGR + V + +G GRDR+ +R DR + NDR
Sbjct: 65 IEDMNGLDLDGRAITVDKAQPQG----------------AGRDRNGDRDYDRDRGSRNDR 108
Query: 157 SRE 159
R+
Sbjct: 109 GRD 111
>gi|357445711|ref|XP_003593133.1| Glycine-rich RNA-binding protein [Medicago truncatula]
gi|355482181|gb|AES63384.1| Glycine-rich RNA-binding protein [Medicago truncatula]
Length = 491
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPR 91
+M+ DE ++GGL +S ++ ++ F+KYG +V K+V D+ S R + +GFVTF +
Sbjct: 222 QMSDTDEFRCFIGGLAWSTSDRRLKDAFEKYGKLVEAKVVVDKFSGRSRGFGFVTFDDKE 281
Query: 92 SAVDAINDMNGRTIDGRVVRVSEVATRG 119
+ +AI MNG +DGR + V + +G
Sbjct: 282 AMEEAIEAMNGIDLDGRTITVDKAQPQG 309
>gi|327293734|ref|XP_003231563.1| U2 snRNP component IST3 [Trichophyton rubrum CBS 118892]
gi|326466191|gb|EGD91644.1| U2 snRNP component IST3 [Trichophyton rubrum CBS 118892]
Length = 277
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLP+ +E + +F +YG+ V + +V D+ T + + + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPFDISEGDILTIFSQYGNPVHLNLVRDKETGKSRGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
++++ G T+ GRV+RV V + R D
Sbjct: 91 VDNLGGATVLGRVLRVDHVRYKRRDDEGTEDNL 123
>gi|326427500|gb|EGD73070.1| hypothetical protein PTSG_12213 [Salpingoeca sp. ATCC 50818]
Length = 1010
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIN 98
++ + V L +S ED ++++F ++G + KIV D R K +GFV NP A+
Sbjct: 344 DARLIVRNLDFSTTEDDLQRIFSRFGKLAETKIVKDDKGRSKGFGFVMLSNPLVVKKAVK 403
Query: 99 DMNGRTIDGRVVRV 112
+NGRT++GR + V
Sbjct: 404 QVNGRTLNGRAIAV 417
>gi|359806697|ref|NP_001241034.1| uncharacterized protein LOC100799124 [Glycine max]
gi|255645259|gb|ACU23127.1| unknown [Glycine max]
Length = 275
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 54/88 (61%), Gaps = 1/88 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M+ + +++GG+ YS +E S+R+ F KYG VV +I+ DR T R + +GF+T+ +
Sbjct: 36 MSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVEE 95
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGR 120
A AI ++G+ + GR +RV+ R R
Sbjct: 96 ASSAIQALDGQDLHGRPIRVNYANERPR 123
>gi|367041712|ref|XP_003651236.1| hypothetical protein THITE_2111279 [Thielavia terrestris NRRL 8126]
gi|346998498|gb|AEO64900.1| hypothetical protein THITE_2111279 [Thielavia terrestris NRRL 8126]
Length = 363
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 3/100 (3%)
Query: 16 VVPIKARVIFNLIEERVKMTID--DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVN 73
+ + R I N + D D + +Y GGLPY +E + +F ++G V +K+V
Sbjct: 7 IQALNKREIENGVPPEASWHADYRDTAFIYFGGLPYELSEGDIITIFSQFGEPVFLKLVR 66
Query: 74 DRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112
D+ T + K +G++ + + RS A++++ G I GR++RV
Sbjct: 67 DKETGKSKGFGWLKYEDQRSTDLAVDNLGGAEIGGRLIRV 106
>gi|296088109|emb|CBI35498.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ +E ++GGL +S ++ S+++ F+K+G +V K+V D+ S R + +GFV+F + ++
Sbjct: 1 MSEHEEYRCFIGGLSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQA 60
Query: 93 AVDAINDMNGRTIDGRVVRV 112
DAI +M+G +DGR + V
Sbjct: 61 MEDAIKEMHGMDLDGRSITV 80
>gi|298244419|ref|ZP_06968225.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297551900|gb|EFH85765.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 106
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVGGLPY + E + ++F++ G V ++ DR T R K +GFV + A AI +
Sbjct: 3 IYVGGLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARAAIEQL 62
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNN--RHRDRY 149
NG T+ R + V+E R R G ++ RDR +N +RDRY
Sbjct: 63 NGSTLGDRTITVNEARER-------RAPGGGGGGYQSRDRSSNGGGYRDRY 106
>gi|388621|gb|AAA33039.1| RNA-binding protein [Mesembryanthemum crystallinum]
Length = 289
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
VYVG LP+ ++ + +VF ++G V++ ++V+DR T R + + FVT + +AI +
Sbjct: 207 VYVGNLPWDVDDARLEQVFSEHGKVLSARVVSDRETGRSRGFAFVTMASESEMNEAIGAL 266
Query: 101 NGRTIDGRVVRVSEVATRGRKS 122
+G+T++GR +RV+ R R+S
Sbjct: 267 DGQTLEGRAIRVNVAEERPRRS 288
Score = 45.8 bits (107), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+++ ++VG LP+ + + + ++F+ G V +++ +R T R + +GFVT A A
Sbjct: 109 EDAKLFVGNLPFDVDSEKLAQIFEGAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 168
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
+ + ++GR + V++ A RG + ++ R
Sbjct: 169 VELYHKFEVNGRFLTVNKAAPRGSRPERAPREYEPSFR 206
>gi|336464966|gb|EGO53206.1| hypothetical protein NEUTE1DRAFT_150582 [Neurospora tetrasperma
FGSC 2508]
Length = 395
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VY GGLPY +E V +F ++G V +K+V D+ T + K +G++ + + RS A
Sbjct: 31 DTAFVYFGGLPYDLSEGDVITIFSQFGEPVFLKLVRDKETGKSKGFGWLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G I GR++RV
Sbjct: 91 VDNLGGAEIGGRLIRV 106
>gi|224059014|ref|XP_002299678.1| predicted protein [Populus trichocarpa]
gi|222846936|gb|EEE84483.1| predicted protein [Populus trichocarpa]
Length = 147
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ + E ++GGL +S ++ +++ F+K+G ++ K+V D+ S R + +GFVTF ++
Sbjct: 1 MSEELEYRCFIGGLSWSTSDRGLKETFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRV 112
DAI MNG +DGR + V
Sbjct: 61 MEDAIEGMNGMDLDGRTITV 80
>gi|406954527|gb|EKD83359.1| RNP-1 like protein RNA-binding protein, partial [uncultured
bacterium]
Length = 95
Score = 61.6 bits (148), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG LPYSA E+ ++ +F YG V I+ DR T R K +GFV N +A +AI
Sbjct: 2 NIYVGNLPYSATEEQLKTMFGVYGEVTTASIIKDRDTGRSKGFGFVEMTNDAAAEEAIQA 61
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSG 125
+N ++GR ++V++ + ++ SG
Sbjct: 62 LNETDMNGRNIKVNQARPKEKRERSG 87
>gi|225463887|ref|XP_002264022.1| PREDICTED: uncharacterized protein LOC100256416 isoform 1 [Vitis
vinifera]
gi|359493015|ref|XP_003634493.1| PREDICTED: uncharacterized protein LOC100256416 isoform 2 [Vitis
vinifera]
Length = 207
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 54/80 (67%), Gaps = 1/80 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ +E ++GGL +S ++ S+++ F+K+G +V K+V D+ S R + +GFV+F + ++
Sbjct: 1 MSEHEEYRCFIGGLSWSTSDRSLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVSFDDKQA 60
Query: 93 AVDAINDMNGRTIDGRVVRV 112
DAI +M+G +DGR + V
Sbjct: 61 MEDAIKEMHGMDLDGRSITV 80
>gi|350297073|gb|EGZ78050.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 395
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VY GGLPY +E V +F ++G V +K+V D+ T + K +G++ + + RS A
Sbjct: 31 DTAFVYFGGLPYDLSEGDVITIFSQFGEPVFLKLVRDKETGKSKGFGWLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G I GR++RV
Sbjct: 91 VDNLGGAEIGGRLIRV 106
>gi|333030558|ref|ZP_08458619.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
gi|332741155|gb|EGJ71637.1| RNP-1 like RNA-binding protein [Bacteroides coprosuis DSM 18011]
Length = 104
Score = 61.2 bits (147), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++++G L ++ N++ + ++F+ YG+V + +++ D+ T R K +GFV + +A AIN+
Sbjct: 2 NIFIGSLSFNVNDEGLAEIFEPYGAVTSARVIKDKFTNRSKGFGFVEMEDDEAATKAINE 61
Query: 100 MNGRTIDGRVVRVSEVATR 118
+NG +DGR + VSE R
Sbjct: 62 LNGAEVDGRPIAVSEARPR 80
>gi|65301143|ref|NP_083936.1| RNA-binding motif protein, X-linked-like-2 [Mus musculus]
gi|12838734|dbj|BAB24311.1| unnamed protein product [Mus musculus]
Length = 385
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL +E + F KYG ++ V ++ DR T + + + FVTF NP A
Sbjct: 4 ADRPGKLFIGGLNLETDEKGLETAFGKYGRIIEVLLMKDRETSKSRGFAFVTFENPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V++
Sbjct: 64 AAARDMNGKSLDGKAIKVAQA 84
>gi|408674060|ref|YP_006873808.1| RNP-1 like RNA-binding protein [Emticicia oligotrophica DSM 17448]
gi|387855684|gb|AFK03781.1| RNP-1 like RNA-binding protein [Emticicia oligotrophica DSM 17448]
Length = 109
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 1/107 (0%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
+++VG LP+ E +++ F++YG V +VKI+ D+ T R K + FV + +A AIN
Sbjct: 2 NIFVGSLPFKIQESELKQYFEEYGEVSSVKIITDKFTGRSKGFAFVEMPDDAAAQKAINA 61
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHR 146
+NG I GR V++ + G + G G +RDNNR+R
Sbjct: 62 LNGSDIGGRSAVVNQAEEKRDNRGGGGGGYNRGGDRGGYNRDNNRNR 108
>gi|297799522|ref|XP_002867645.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
gi|297313481|gb|EFH43904.1| RNA-binding protein cp31 [Arabidopsis lyrata subsp. lyrata]
Length = 305
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
ER + VYVG LP+ + + +VF ++G VV ++V DR T R + +GFVT
Sbjct: 211 ERAPRVYEPAFRVYVGNLPWDVDNGRLEQVFSEHGKVVEARVVYDRETGRSRGFGFVTMS 270
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRK 121
N DAI ++G+ ++GR +RV+ R R+
Sbjct: 271 NENELNDAIAALDGQNMEGRAIRVNVAEERPRR 303
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 78/167 (46%), Gaps = 8/167 (4%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ ++VG L Y + ++ +F++ G+V +++ +R T + + +GFVT A A
Sbjct: 125 EEAKLFVGNLAYDVDSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAETA 184
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR----HKGRDRDNNRHRDRYQDR 152
+ N ++GR++ V++ A RG + + R + D DN R + +
Sbjct: 185 VEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQVFSE- 243
Query: 153 YNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLE 199
+ + E DR+ G R + V + + D + D G+++E
Sbjct: 244 -HGKVVEARVVYDRETGRSRGFGFVTMSNENELNDAIAALD-GQNME 288
>gi|302420537|ref|XP_003008099.1| U2 snRNP component IST3 [Verticillium albo-atrum VaMs.102]
gi|261353750|gb|EEY16178.1| U2 snRNP component IST3 [Verticillium albo-atrum VaMs.102]
Length = 333
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 3/92 (3%)
Query: 24 IFNLIEERVKMTID--DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGK 80
I N I +D D + +Y GGLPY +E V +F ++G V +K+ D+ T + K
Sbjct: 15 IENGISPEASWHVDYRDTAFIYFGGLPYEMSEGDVITIFSQFGEPVWLKLARDKETGKAK 74
Query: 81 CYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112
+G++ + + RS A++++ G TI R+VRV
Sbjct: 75 GFGWLKYEDQRSTDLAVDNLGGATIGSRMVRV 106
>gi|242279861|ref|YP_002991990.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
gi|242122755|gb|ACS80451.1| RNP-1 like RNA-binding protein [Desulfovibrio salexigens DSM 2638]
Length = 88
Score = 61.2 bits (147), Expect = 7e-07, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG LP+S++E+ VR F+++G V++VK++NDR T R + +GFV + A+ AI +
Sbjct: 4 NIYVGNLPWSSSEEDVRAAFEEFGEVISVKLINDRETGRPRGFGFVEMED-EGAIQAIEN 62
Query: 100 MNGRTIDGRVVRVSE 114
++G GR ++V+E
Sbjct: 63 LDGSDFGGRNLKVNE 77
>gi|168015710|ref|XP_001760393.1| predicted protein [Physcomitrella patens subsp. patens]
gi|21388658|dbj|BAC00785.1| glycine-rich RNA binding protein [Physcomitrella patens]
gi|76262794|gb|ABA41484.1| glycine-rich RNA binding protein [Physcomitrella patens]
gi|162688407|gb|EDQ74784.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 162
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M +E +VGGL ++ + + F +G VV K+++DR T R + +GFVTF + S
Sbjct: 1 MAGGEEFRCFVGGLAWATTDGRLEGAFRPFGEVVQSKVISDRETGRSRGFGFVTFADENS 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
AI +MNG+ +DGR + V++
Sbjct: 61 MNAAIKEMNGQELDGRNITVNQA 83
>gi|239612039|gb|EEQ89026.1| U2 snRNP component IST3 [Ajellomyces dermatitidis ER-3]
Length = 258
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+G LPY +E + +F +YG V + +V D+ T + K + F+ + + RS A
Sbjct: 11 DTAYIYIGSLPYDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKGFAFLKYEDQRSTDLA 70
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++ G T+ GR++RV V
Sbjct: 71 VDNLGGATVLGRMIRVDHV 89
>gi|225441175|ref|XP_002265930.1| PREDICTED: uncharacterized protein LOC100257264 [Vitis vinifera]
Length = 332
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M +E+ ++VGGL ++ +E + F +YG ++ ++ +R T R + +GF+TF + R+
Sbjct: 1 MGGREENRIFVGGLGWNTSERHLEDAFSRYGKILESLVMMERDTGRPRGFGFITFADHRA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
DAI +M+GR +DGRV+ V++ + +SG
Sbjct: 61 MEDAIREMHGRELDGRVISVNKAQPKMGSEDSG 93
>gi|50417226|gb|AAH78245.1| Rbmx2 protein [Danio rerio]
Length = 358
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 12/112 (10%)
Query: 18 PIKARVIFNLIEER-----VKMTID------DESSVYVGGLPYSANEDSVRKVFDKYGSV 66
P+ + N + ER +K T+ + + V++GG PY E + VF +YG +
Sbjct: 3 PLTKVKLINELNEREAQLGIKETVSWHSVYKNSAWVFIGGFPYELTEGDIICVFSQYGEI 62
Query: 67 VAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV VA
Sbjct: 63 ANINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVAN 114
>gi|356511826|ref|XP_003524623.1| PREDICTED: uncharacterized protein LOC100782808 [Glycine max]
Length = 274
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPR 91
M+ + +++GG+ YS +E S+R+ F KYG VV +I+ DR T R + +GF+T+ +
Sbjct: 35 SMSSAPSTKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFITYTSVE 94
Query: 92 SAVDAINDMNGRTIDGRVVRV 112
A AI ++G+ + GR +RV
Sbjct: 95 EASSAIQALDGQDLHGRPIRV 115
>gi|94967282|ref|YP_589330.1| RNA-binding protein, RNP-1 [Candidatus Koribacter versatilis
Ellin345]
gi|94549332|gb|ABF39256.1| RNA-binding protein, RNP-1 [Candidatus Koribacter versatilis
Ellin345]
Length = 107
Score = 61.2 bits (147), Expect = 8e-07, Method: Composition-based stats.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 1/101 (0%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VG ++A ED +R++F YG V +V +V DR T R + +GFV N A AI +
Sbjct: 4 IFVGNFAFTATEDDIRQLFTPYGKVDSVSLVTDRDTGRARGFGFVEMPNDTEAAAAIEGL 63
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRD 141
NGR GR + V+E + + NSG R R KGR R+
Sbjct: 64 NGRDSGGRALNVNEARPKTERGNSGGGGGRGNFRDKGRKRE 104
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+YV L S +ED +RK F +YG++ +V ++ D + KC+GFV F NP A A++ +N
Sbjct: 221 IYVKNLSDSTSEDDLRKTFGEYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALN 280
Query: 102 GRTID 106
G+ D
Sbjct: 281 GKKFD 285
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 2/88 (2%)
Query: 28 IEERVKMTIDDESSV--YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFV 85
E+ VK +D V YV L + +++ ++++F +YG++ + K++ D S + GFV
Sbjct: 308 FEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKELFSEYGTITSCKVMRDPSGISRGSGFV 367
Query: 86 TFGNPRSAVDAINDMNGRTIDGRVVRVS 113
F P A A+ +MNG+ I + + V+
Sbjct: 368 AFSTPEEASRALGEMNGKMIVSKPLYVA 395
Score = 47.0 bits (110), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+S+YVG L S + + +F++ G VV+V++ D ST R YG+V + N + A AI+
Sbjct: 40 TSLYVGDLDQSVTDSQLYDLFNQVGQVVSVRVCRDLSTGRSLGYGYVNYSNQQDATRAID 99
Query: 99 DMNGRTIDGRVVRVS 113
+N ++ + +RVS
Sbjct: 100 VLNFTPLNNKTIRVS 114
Score = 45.4 bits (106), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 121/298 (40%), Gaps = 54/298 (18%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+++ L S + ++ + F +G++++ KI D S + K YGFV + + +A AI+ +N
Sbjct: 130 IFIKNLDKSIDIKALHETFSSFGTIISCKIATDASGQSKGYGFVQYDSEEAAQTAIDKLN 189
Query: 102 GRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDRSRERT 161
G ++ + V V G + +DRD+ + ++ + Y + T
Sbjct: 190 GMLMNDKQVYV-------------------GVFLRKQDRDSEMSKTKFNNIYVKNLSDST 230
Query: 162 SSQDRDKGMGREYEHV------RDHDRDPSRDRF----SDEDQGRDLENNDQGHTRIHDP 211
S D K G EY + RD D F + ED + ++ + + D
Sbjct: 231 SEDDLRKTFG-EYGTITSVVVMRDADGKSKCFGFVNFENPEDAAKAVDALN--GKKFDDK 287
Query: 212 E--LANWERKSELDMTRDREIDGTDDYHTIVDEGKD-----HLSRKRDGSTVDDHQLREF 264
E + ++KSE RE++ + V E D +L K T+DD +L+E
Sbjct: 288 EWYVGKAQKKSE------REVELKSRFEQTVKEQVDKYQGVNLYVKNLDDTIDDEKLKEL 341
Query: 265 SSNSSDDNSDQVKELDRSIQR---------REELKKEISHMEERVNVKEQLVLDLQKR 313
S S +V I R EE + + M ++ V + L + L +R
Sbjct: 342 FSEYGTITSCKVMRDPSGISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQR 399
>gi|327352804|gb|EGE81661.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
ATCC 18188]
Length = 278
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+G LPY +E + +F +YG V + +V D+ T + K + F+ + + RS A
Sbjct: 31 DTAYIYIGSLPYDLSEGDILTIFSQYGEPVHLNLVRDKETGKSKGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++ G T+ GR++RV V
Sbjct: 91 VDNLGGATVLGRMIRVDHV 109
>gi|315049793|ref|XP_003174271.1| U2 snRNP component IST3 [Arthroderma gypseum CBS 118893]
gi|311342238|gb|EFR01441.1| U2 snRNP component IST3 [Arthroderma gypseum CBS 118893]
Length = 280
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VY+GGLP+ +E + +F +YG+ V + +V D+ T + + + F+ + + RS A
Sbjct: 31 DTAYVYIGGLPFDISEGDILTIFSQYGNPVHLNLVRDKETGKSRGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++ G T+ GRV+RV V
Sbjct: 91 VDNLGGATVLGRVLRVDHV 109
>gi|291384550|ref|XP_002708825.1| PREDICTED: RNA binding motif protein, X-linked-like [Oryctolagus
cuniculus]
Length = 359
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL +E ++ F KYG ++ V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNPETDEKALEAAFGKYGRIIEVLLMKDRETSKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
A DMNG+++DG+ ++V++
Sbjct: 64 AAARDMNGKSLDGKAIKVAQA 84
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 52/90 (57%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
+++YV LP +E ++ +F ++G +++VK++ D S R +C+GFV F A A+
Sbjct: 191 TNIYVKNLPADVDEQGLQDLFSQFGKMLSVKVMRDSSGRSRCFGFVNFEKHEEAQKAVVH 250
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
MNG+ + GR++ S R + N + +F
Sbjct: 251 MNGKEVSGRLLYASRAQKRVERQNELKRRF 280
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+YV L S ++ +RK F YG + + K++ + S K +GFV F +P A A+ +MN
Sbjct: 296 LYVKNLDDSIDDGKLRKEFSPYGVITSAKVMTEGS-HSKGFGFVCFSSPEEATKAVTEMN 354
Query: 102 GRTIDGRVVRVS 113
GR + + + V+
Sbjct: 355 GRIVGTKPLYVA 366
Score = 42.4 bits (98), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+S+YVG L E + + F GS++++++ D +T R Y ++ F P A A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGSILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 99 DMNGRTIDGRVVRV 112
MN + G+ +R+
Sbjct: 71 TMNFEMLKGQPIRI 84
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
+++ L S + ++ F +G++++ K+V D +RG +GFV F +A AIN M
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRG--FGFVHFETYEAAQQAINTM 158
Query: 101 NGRTIDGRVVRVSEVATR 118
NG ++ R V V +R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
>gi|123455020|ref|XP_001315258.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121897929|gb|EAY03035.1| hypothetical protein TVAG_143350 [Trichomonas vaginalis G3]
Length = 156
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100
+VYVG L +S NED ++ VF+KYG++ +V+I + + K +GFV F N A A +M
Sbjct: 27 TVYVGSLSWSTNEDGLKAVFEKYGNITSVRIPRNDRDQSKGFGFVEFENEEDAKKAC-EM 85
Query: 101 NGRTIDGRVVRVS 113
+G ++GR ++V+
Sbjct: 86 DGTELEGRALKVN 98
>gi|261859212|dbj|BAI46128.1| RNA binding motif protein, X-linked-like 2 [synthetic construct]
Length = 392
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL +E ++ F KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
A+ DMNG+++DG+ ++V++
Sbjct: 64 AAVRDMNGKSLDGKAIKVAQA 84
>gi|225562488|gb|EEH10767.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
gi|325092417|gb|EGC45727.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 136
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GGL + +D++R F+KYG++ +V DR T R + +GFV F + A A+N
Sbjct: 2 SKLFIGGLAWHTTDDTLRAGFEKYGTIEEAIVVKDRDTNRSRGFGFVRFASDAEADAAMN 61
Query: 99 DMNGRTIDGRVVRVSEVATR 118
M+ + DGRV+RV + + R
Sbjct: 62 AMSNQEFDGRVIRVDKASDR 81
>gi|156367093|ref|XP_001627254.1| predicted protein [Nematostella vectensis]
gi|156214158|gb|EDO35154.1| predicted protein [Nematostella vectensis]
Length = 139
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ +E Y+G L + NE ++ F +Y VV V++++DR T R + + FVTFG+ ++
Sbjct: 1 MGEECKCYIGNLDFKVNEADLQDRFSRY-DVVDVQVISDRETQRPRGFAFVTFGSKKNME 59
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DAIN+++G+ DGR ++V++ +R
Sbjct: 60 DAINELDGQEFDGRSMKVNQARSR 83
>gi|154279360|ref|XP_001540493.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412436|gb|EDN07823.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 149
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GGL + +D++R F+KYG++ +V DR T R + +GFV F + A A+N
Sbjct: 2 SKLFIGGLAWHTTDDTLRAGFEKYGTIEEAIVVKDRDTNRSRGFGFVRFASDAEADAAMN 61
Query: 99 DMNGRTIDGRVVRVSEVATR 118
M+ + DGRV+RV + + R
Sbjct: 62 AMSNQEFDGRVIRVDKASDR 81
>gi|148237346|ref|NP_001084981.1| RNA-binding motif protein, X chromosome [Xenopus laevis]
gi|82236857|sp|Q6IRQ4.1|RBMX_XENLA RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G
gi|47682580|gb|AAH70649.1| MGC82187 protein [Xenopus laevis]
Length = 370
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG VV V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA ++NG+ +DG+ ++V E AT+
Sbjct: 64 DAARELNGKALDGKPIKV-EQATK 86
>gi|119357086|ref|YP_911730.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
gi|119354435|gb|ABL65306.1| RNP-1 like RNA-binding protein [Chlorobium phaeobacteroides DSM
266]
Length = 90
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIND 99
++Y+G L Y+ +ED +R F ++G V + I+ND+ S R K +GF+ N A +AI
Sbjct: 2 NIYIGNLAYTVSEDDLRDAFSQFGQVDSANIINDKFSGRSKGFGFIEMSNDSEAREAIES 61
Query: 100 MNGRTIDGRVVRVSEV 115
MN + + GR ++V+E
Sbjct: 62 MNDQDLKGRTIKVNEA 77
>gi|296485757|tpg|DAA27872.1| TPA: scaffold attachment factor B [Bos taurus]
Length = 891
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYND 155
+ G+++ V + G+KS+ R+ + DR N R+ DR +D
Sbjct: 469 KTELHGKMISVEKAKNEPAGKKSSERREGEGKKEKSSNTDRSANLKREEKADRKDD 524
>gi|193211762|ref|YP_001997715.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
gi|193085239|gb|ACF10515.1| RNP-1 like RNA-binding protein [Chlorobaculum parvum NCIB 8327]
Length = 90
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAIND 99
++Y+G LPYS +ED +R F ++G V + I+ D+ S R K +GFV N A +AI+
Sbjct: 2 NIYIGNLPYSVSEDDLRDAFSEFGQVHSANIITDKFSGRSKGFGFVDMPNDGEAREAIDA 61
Query: 100 MNGRTIDGRVVRVSEV 115
MN + GR ++V+E
Sbjct: 62 MNDKDFKGRTIKVNEA 77
>gi|116791319|gb|ABK25933.1| unknown [Picea sitchensis]
Length = 221
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GGL Y ++ S+R+ F +YG V+ +I++DR T R + +GF++F + A AI
Sbjct: 40 SRLFIGGLSYGMDDQSLRESFTEYGEVIEARIIHDRETGRSRGFGFISFTSNEEAAAAIT 99
Query: 99 DMNGRTIDGRVVRVSEVATR 118
M+G+ + GR+V V+ R
Sbjct: 100 GMDGKDLHGRLVHVNYATER 119
>gi|255949586|ref|XP_002565560.1| Pc22g16450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592577|emb|CAP98933.1| Pc22g16450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 279
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLP+ +E + +F +YG V V +V D+ T + K + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPFDLSEGDIITIFSQYGEPVHVNLVRDKETGKSKGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G T+ GR++RV
Sbjct: 91 VDNLGGATVMGRLLRV 106
>gi|390478410|ref|XP_002761655.2| PREDICTED: scaffold attachment factor B1 isoform 1 [Callithrix
jacchus]
Length = 915
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYN----- 154
+ G+++ V + G+K++ RD + DR N RD DR +
Sbjct: 469 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSANLKRDDKGDRKDNAKKG 528
Query: 155 -DRSRERTSSQD 165
D S E++ QD
Sbjct: 529 EDGSGEKSKDQD 540
>gi|153792723|ref|NP_001093185.1| scaffold attachment factor B1 [Bos taurus]
gi|148743838|gb|AAI42190.1| SAFB protein [Bos taurus]
Length = 903
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYND 155
+ G+++ V + G+KS+ R+ + DR N R+ DR +D
Sbjct: 469 KTELHGKMISVEKAKNEPAGKKSSERREGEGKKEKSSNTDRSANLKREEKADRKDD 524
>gi|326469216|gb|EGD93225.1| RNA binding domain-containing protein [Trichophyton tonsurans CBS
112818]
gi|326479280|gb|EGE03290.1| U2 snRNP component IST3 [Trichophyton equinum CBS 127.97]
Length = 276
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLP+ +E + +F +YG+ V + +V D+ T + + + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPFDISEGDILTIFSQYGNPVHLNLVRDKETGKSRGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
++++ G T+ GRV+RV V + R D
Sbjct: 91 VDNLGGATVLGRVLRVDHVRYKRRDDEGTEDNL 123
>gi|357152187|ref|XP_003576037.1| PREDICTED: glycine-rich RNA-binding protein blt801-like
[Brachypodium distachyon]
Length = 102
Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E +VGGL + ++ S+ F +G ++ K++ DR T R + +GFVTF ++ +A
Sbjct: 2 EEYRCFVGGLAWVTDDQSLENAFRSFGEILDAKVIPDRETGRSRGFGFVTFTTEQAMQNA 61
Query: 97 INDMNGRTIDGRVVRVSEVATRGRK 121
IN MNG+ IDGR + V+ R +
Sbjct: 62 INAMNGKDIDGRTISVNMAQARNNR 86
>gi|114052629|ref|NP_001040075.1| RNA-binding motif protein, X chromosome [Bos taurus]
gi|119907483|ref|XP_001250252.1| PREDICTED: heterogeneous nuclear ribonucleoprotein G-like [Bos
taurus]
gi|109892459|sp|Q29RT0.1|RBMX_BOVIN RecName: Full=RNA-binding motif protein, X chromosome; AltName:
Full=Heterogeneous nuclear ribonucleoprotein G;
Short=hnRNP G; Contains: RecName: Full=RNA-binding motif
protein, X chromosome, N-terminally processed
gi|88954147|gb|AAI14041.1| Testes-specific heterogenous nuclear ribonucleoprotein G-T [Bos
taurus]
gi|296480068|tpg|DAA22183.1| TPA: RNA binding motif protein, X-linked [Bos taurus]
Length = 396
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL +E S+ F KYG + V ++ DR T + + + F+TF +P A
Sbjct: 4 ADRPGKLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
A+ DMNG+++DG+ ++V++
Sbjct: 64 AAVRDMNGKSLDGKAIKVAQA 84
>gi|410340767|gb|JAA39330.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340769|gb|JAA39331.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340771|gb|JAA39332.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340773|gb|JAA39333.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340775|gb|JAA39334.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
gi|410340777|gb|JAA39335.1| RNA binding motif (RNP1, RRM) protein 3 [Pan troglodytes]
Length = 157
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF P A A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFPIPEHASVA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV R +
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGT 89
>gi|302663591|ref|XP_003023436.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517]
gi|291187433|gb|EFE42818.1| conserved hypothetical protein [Trichophyton verrucosum HKI 0517]
Length = 277
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLP+ +E + +F +YG+ V + +V D+ T + + + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPFDISEGDILTIFSQYGNPVHLNLVRDKETGKSRGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
++++ G T+ GRV+RV V + R D
Sbjct: 91 VDNLGGATVLGRVLRVDHVRYKRRDDEGTEDNL 123
>gi|123471459|ref|XP_001318929.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121901700|gb|EAY06706.1| hypothetical protein TVAG_211580 [Trichomonas vaginalis G3]
Length = 220
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 46/73 (63%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100
SV++G LP+ E ++++F KYG V+ KI + + R + YGFV+F A A++++
Sbjct: 30 SVHIGNLPFEYTEAKLKEIFGKYGEVLDSKIPTNPAGRSRGYGFVSFALKEDAQKAVDEL 89
Query: 101 NGRTIDGRVVRVS 113
N + ++GR V V+
Sbjct: 90 NNKEMEGRKVEVA 102
>gi|340975515|gb|EGS22630.1| hypothetical protein CTHT_0011020 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 367
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y GGLPY +E + +F ++G V +K+ D+ T + K +G++ + + RS A
Sbjct: 31 DTAFIYFGGLPYELSEGDIITIFSQFGEPVFLKLARDKETGKSKGFGWLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
+++++G I GR++RV
Sbjct: 91 VDNLSGAEIGGRLIRV 106
>gi|237838167|ref|XP_002368381.1| nuclear cap-binding protein, putative [Toxoplasma gondii ME49]
gi|211966045|gb|EEB01241.1| nuclear cap-binding protein, putative [Toxoplasma gondii ME49]
gi|221484348|gb|EEE22644.1| 20 kD nuclear cap binding protein, putative [Toxoplasma gondii GT1]
gi|221505675|gb|EEE31320.1| 20 kD nuclear cap binding protein, putative [Toxoplasma gondii VEG]
Length = 282
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 61/114 (53%), Gaps = 11/114 (9%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKC-YGFVTFGNPRSAVDAINDM 100
VYVG L +S ED + +VF + G + V + +R TR C + FV F P+SA A+ +
Sbjct: 36 VYVGNLNFSTTEDELYEVFSQAGLIRRVVMGLNRQTRAPCGFAFVEFFRPQSAQIAVAVL 95
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYN 154
NG + DGRV+RV ++SG D G R GR + RD Y++ Y+
Sbjct: 96 NGCSCDGRVIRV--------DADSGEDI--DGDRKYGRGFTGRQWRDEYREEYD 139
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
+++YV LP +E ++ +F ++G +++VK++ D S + +GFV F A A+ D
Sbjct: 191 TNIYVKNLPGHVDERGLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVMD 250
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQFRH 131
MNG + GR++ V RG + N + +F H
Sbjct: 251 MNGMQVSGRLLYVGRAQKRGERQNELKRRFEH 282
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+YV L S +++ +RK F YG + + K++ + K +GFV F +P A A+ +MN
Sbjct: 296 LYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTE-GGHSKGFGFVCFSSPEEATKAVTEMN 354
Query: 102 GRTIDGRVVRVS 113
GR I + + V+
Sbjct: 355 GRIIGTKPLYVA 366
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+S+YVG L E + + F G ++++++ D +T R Y ++ F P A A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 99 DMNGRTIDGRVVRV 112
MN I G+ +R+
Sbjct: 71 TMNFEVIKGQPIRI 84
Score = 38.9 bits (89), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDM 100
V++ L S + ++ F +G++++ K+V +D +RG +GFV F +A AI+ M
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRG--FGFVHFETHEAAQQAISTM 158
Query: 101 NGRTIDGRVVRVSEVATR 118
NG ++ R V V +R
Sbjct: 159 NGMLLNDRKVFVGHFKSR 176
>gi|301784757|ref|XP_002927792.1| PREDICTED: LOW QUALITY PROTEIN: scaffold attachment factor B1-like
[Ailuropoda melanoleuca]
Length = 907
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 5/116 (4%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 400 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 459
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYND 155
+ G+++ V + G+K++ R+ G + K DR N R+ DR D
Sbjct: 460 KTELHGKMISVEKAKNEPTGKKTSEKREG--EGKKEKSSDRSANLKREDKADRKED 513
>gi|327301915|ref|XP_003235650.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
gi|326463002|gb|EGD88455.1| glycine-rich RNA-binding protein [Trichophyton rubrum CBS 118892]
Length = 149
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+++GGL + +D++R+ F K+G++ +V DR T R + +GFV F + A A+N M
Sbjct: 6 LFIGGLAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAALNAM 65
Query: 101 NGRTIDGRVVRV 112
N + DGRV+RV
Sbjct: 66 NNQEFDGRVIRV 77
>gi|401401970|ref|XP_003881139.1| putative nuclear cap-binding protein [Neospora caninum Liverpool]
gi|325115551|emb|CBZ51106.1| putative nuclear cap-binding protein [Neospora caninum Liverpool]
Length = 287
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKC-YGFVTFG 88
E K + VYVG L +S ED + +VF G V V + +R TR C + FV +
Sbjct: 24 EEWKAKVARSCVVYVGNLNFSTTEDELYEVFSHAGLVRRVVMGLNRQTRSPCGFAFVEYF 83
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDR 148
PRSA AI +NG DGRV+RV ++SG D G R GR + RD
Sbjct: 84 RPRSAQVAIAVLNGCNCDGRVIRV--------DADSGEDI--DGDRKYGRGFTGRQWRDE 133
Query: 149 YQDRY 153
Y++ Y
Sbjct: 134 YREEY 138
>gi|403295943|ref|XP_003938881.1| PREDICTED: scaffold attachment factor B1 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 917
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYN----- 154
+ G+++ V + G+K++ RD + DR N RD DR +
Sbjct: 469 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSANLKRDDKGDRKDNAKKG 528
Query: 155 -DRSRERTSSQD 165
D S E++ QD
Sbjct: 529 EDGSGEKSKDQD 540
>gi|168037600|ref|XP_001771291.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677380|gb|EDQ63851.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 60.8 bits (146), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ +D + + F +G V+ K+++DR T R + +GF+TF + + +AI
Sbjct: 1 EFRCFVGGLAWATTDDRLEQAFRPFGDVIQSKVISDRETGRSRGFGFITFADENAMNEAI 60
Query: 98 NDMNGRTIDGRVVRVSEVATR 118
+MNG+ +DGR + V++ +R
Sbjct: 61 KEMNGKELDGRNITVNQAQSR 81
>gi|298246745|ref|ZP_06970550.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
gi|297549404|gb|EFH83270.1| RNP-1 like RNA-binding protein [Ktedonobacter racemifer DSM 44963]
Length = 109
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 57/114 (50%), Gaps = 9/114 (7%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVGGLPY + E + ++F++ G V ++ DR T R K +GFV + A AI +
Sbjct: 3 IYVGGLPYQSTEQDLIQLFEQIGQVTFATVITDRETGRSKGFGFVEMSSDDEARVAIEQL 62
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRD-RDNNRHRDRYQDRY 153
NG T+ R + V+E R R G ++ RD R N Y+DRY
Sbjct: 63 NGSTLGNRTITVNEARER-------RAPGGGGGGYQSRDRRSNGGGGGGYRDRY 109
>gi|432877561|ref|XP_004073160.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 2
[Oryzias latipes]
Length = 380
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL E ++ + F KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVILMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
DA +MNG+++DG+ ++V E AT+ + ++GR
Sbjct: 64 DAAREMNGKSLDGKPIKV-EQATKPQFESAGR 94
>gi|440796891|gb|ELR17992.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 147
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+ ++VGGL + +++S+R F+++G VV K++ DR T + + +GFVTF + A A N
Sbjct: 3 AKLFVGGLSWGTDDNSLRSAFEQHGEVVDAKVIQDRDTGKSRGFGFVTFASADEAEAAKN 62
Query: 99 DMNGRTIDGRVVRV 112
+N +DGR +RV
Sbjct: 63 ALNQTELDGREIRV 76
>gi|432877559|ref|XP_004073159.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Oryzias latipes]
Length = 386
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL E ++ + F KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETTEKALEQYFSKYGRIVEVILMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
DA +MNG+++DG+ ++V E AT+ + ++GR
Sbjct: 64 DAAREMNGKSLDGKPIKV-EQATKPQFESAGR 94
>gi|183221265|ref|YP_001839261.1| RNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
gi|189911356|ref|YP_001962911.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167776032|gb|ABZ94333.1| RNA-binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Ames)']
gi|167779687|gb|ABZ97985.1| RNA binding protein [Leptospira biflexa serovar Patoc strain 'Patoc
1 (Paris)']
Length = 89
Score = 60.5 bits (145), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 52/75 (69%), Gaps = 1/75 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRG-KCYGFVTFGNPRSAVDAIN 98
+ +YVG L +S E+++R++F YG++ +K+++DR T + + F+T+ +P A +A+
Sbjct: 4 NKIYVGNLKFSLKEENIRQIFSVYGAIQDLKMIHDRETGNFRGFAFITYASPSEAEEAVA 63
Query: 99 DMNGRTIDGRVVRVS 113
MNG+ IDGR ++V+
Sbjct: 64 QMNGQPIDGRNLKVT 78
>gi|116781810|gb|ABK22248.1| unknown [Picea sitchensis]
Length = 215
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M+ E +VGGL +S ++ ++ F K+G ++ K+V DR T R + +GFVTF + +S
Sbjct: 1 MSDAPEYRCFVGGLSWSTSDRTLEDAFHKFGHLIEAKVVVDRDTGRSRGFGFVTFDDKKS 60
Query: 93 AVDAINDMNGRTIDGRVVRV 112
DAI+ M+G ++DGR + V
Sbjct: 61 MEDAIDSMHGMSLDGRSITV 80
>gi|8927581|gb|AAF82129.1|AF279289_1 testes-specific heterogenous nuclear ribonucleoprotein G-T [Homo
sapiens]
Length = 386
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+++GGL +E ++ F KYG +V V ++ DR T + + + FVTF +P A A+ DM
Sbjct: 4 LFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKAAVRDM 63
Query: 101 NGRTIDGRVVRVSEV 115
NG+++DG+ ++V++
Sbjct: 64 NGKSLDGKAIKVAQA 78
>gi|162463657|ref|NP_001105707.1| glycine-rich protein1 [Zea mays]
gi|22293|emb|CAA43431.1| glycine-rich protein [Zea mays]
Length = 155
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF +
Sbjct: 5 DVEYRCFVGGLAWATDDHSLHNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEERMRN 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
I MNG+ +DGR + V+E
Sbjct: 65 RIEGMNGKELDGRNITVNEA 84
>gi|119479609|ref|XP_001259833.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
gi|119407987|gb|EAW17936.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
Length = 294
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLP+ +E + +F +YG V V ++ D+ T + + + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPFDLSEGDIITIFSQYGEPVHVDLIRDKETGKSRGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G T+ GRV+RV
Sbjct: 91 VDNLTGATVLGRVLRV 106
>gi|407921942|gb|EKG15076.1| hypothetical protein MPH_07759 [Macrophomina phaseolina MS6]
Length = 552
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VY+GGLPY +E + +F +YG V V +V D+ T + K + F+ + + RS A
Sbjct: 31 DTAFVYIGGLPYEVSEGDIVTIFSQYGEPVYVNLVRDKETGKSKGFAFLKYEDQRSCDLA 90
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRD 127
+++++G + GR++ V + ++ RD
Sbjct: 91 VDNLSGAKVMGRIISVDHTRYKKKEGEELRD 121
>gi|330790275|ref|XP_003283223.1| hypothetical protein DICPUDRAFT_146813 [Dictyostelium purpureum]
gi|325086904|gb|EGC40287.1| hypothetical protein DICPUDRAFT_146813 [Dictyostelium purpureum]
Length = 862
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 5/79 (6%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS----TRGKCY-GFVTFGNPRSAV 94
+++++G LP+ ANE + +F KYG V A+K++ ++ RG Y VTF +P+ A
Sbjct: 314 TTLFLGTLPFEANEQVLTDLFSKYGKVSAIKVIAPKNEDDRKRGINYCAIVTFTSPKDAH 373
Query: 95 DAINDMNGRTIDGRVVRVS 113
A +D+ G+ I GR +RVS
Sbjct: 374 KAKDDLEGKQIFGRDLRVS 392
>gi|296816707|ref|XP_002848690.1| U2 snRNP component IST3 [Arthroderma otae CBS 113480]
gi|238839143|gb|EEQ28805.1| U2 snRNP component IST3 [Arthroderma otae CBS 113480]
Length = 276
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLP+ +E + +F +YG+ V + +V D+ T + + + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPFDISEGDILTIFSQYGNPVHLNLVRDKETGKSRGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++ G T+ GRV+RV V
Sbjct: 91 VDNLGGATVLGRVLRVDHV 109
>gi|156367091|ref|XP_001627253.1| predicted protein [Nematostella vectensis]
gi|156214157|gb|EDO35153.1| predicted protein [Nematostella vectensis]
Length = 239
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDK----YGSVVAVK-----IVNDRSTRGKCYG 83
KM D + VY G LP+ +D ++ VF+ VV +K + R + +G
Sbjct: 5 KMVFADPNKVYAGNLPFKLTQDELKAVFEAESLTVTDVVIMKEPRNEFYQQQEPRSRGFG 64
Query: 84 FVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114
FVTF NP A A+N +NG+ + GR ++++
Sbjct: 65 FVTFANPEDAQTAVNSLNGKEVQGRTLKIAP 95
>gi|410913465|ref|XP_003970209.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 2
[Takifugu rubripes]
Length = 383
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL E ++ + F KYG + V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETTEKALEQFFSKYGRIAEVLLMKDRETNKSRGFAFVTFESPSDAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
DA +MNG+++DG+ ++V E AT+ + + GR
Sbjct: 64 DAAREMNGKSLDGKNIKV-EQATKPQFESGGR 94
>gi|119183786|ref|XP_001242884.1| hypothetical protein CIMG_06780 [Coccidioides immitis RS]
gi|392865790|gb|EAS31617.2| U2 snRNP component IST3 [Coccidioides immitis RS]
Length = 269
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLPY +E + +F ++G V + +V D+ T + K + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPYDLSEGDILTIFSQFGEPVHLNLVRDKDTGKSKGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G T+ GR++RV
Sbjct: 91 VDNLCGATVMGRLLRV 106
>gi|217071940|gb|ACJ84330.1| unknown [Medicago truncatula]
Length = 211
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ +DE +VGGL +S ++ +R F+K+G + K+V D+ S R + +GFVT+ +
Sbjct: 1 MSDEDEYRCFVGGLAWSTSDRKLRDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTYDEKKV 60
Query: 93 AVDAINDMNGRTIDGRVVRV 112
DAI+ MNG +DGR + V
Sbjct: 61 MEDAIDAMNGIDLDGRTITV 80
>gi|410913463|ref|XP_003970208.1| PREDICTED: RNA-binding motif protein, X chromosome-like isoform 1
[Takifugu rubripes]
Length = 391
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL E ++ + F KYG + V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETTEKALEQFFSKYGRIAEVLLMKDRETNKSRGFAFVTFESPSDAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
DA +MNG+++DG+ ++V E AT+ + + GR
Sbjct: 64 DAAREMNGKSLDGKNIKV-EQATKPQFESGGR 94
>gi|148697138|gb|EDL29085.1| RNA binding motif protein, X-linked 2, isoform CRA_a [Mus musculus]
Length = 296
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 44 VGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNG 102
+GGLPY E + VF +YG +V + +V D+ T + K + F+ + + RS V A+++ NG
Sbjct: 10 IGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNG 69
Query: 103 RTIDGRVVRVSEVA 116
I GR +RV V+
Sbjct: 70 IKIKGRTIRVDHVS 83
>gi|408794570|ref|ZP_11206175.1| hypothetical protein LEP1GSC017_3646 [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408461805|gb|EKJ85535.1| hypothetical protein LEP1GSC017_3646 [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 89
Score = 60.1 bits (144), Expect = 2e-06, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 50/73 (68%), Gaps = 1/73 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRG-KCYGFVTFGNPRSAVDAINDM 100
+YVG L ++ E+++R++F YG + +K+++DR T + + F+T+ NP A +A+ M
Sbjct: 6 IYVGNLKFTLKEENIRQIFSVYGVIQDLKMIHDRETGNFRGFAFITYANPEEAEEAVTQM 65
Query: 101 NGRTIDGRVVRVS 113
NG+ +DGR ++V+
Sbjct: 66 NGQPVDGRNLKVT 78
>gi|326474784|gb|EGD98793.1| glycine-rich RNA-binding protein [Trichophyton tonsurans CBS
112818]
Length = 149
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+++GGL + +D++R+ F K+G++ +V DR T R + +GFV F + A A+N M
Sbjct: 6 LFIGGLAWHTTDDTLREGFSKFGTIEEAIVVKDRDTNRSRGFGFVRFSSDSEADAALNAM 65
Query: 101 NGRTIDGRVVRV 112
N + DGRV+RV
Sbjct: 66 NNQEFDGRVIRV 77
>gi|396499970|ref|XP_003845608.1| hypothetical protein LEMA_P009160.1 [Leptosphaeria maculans JN3]
gi|312222189|emb|CBY02129.1| hypothetical protein LEMA_P009160.1 [Leptosphaeria maculans JN3]
Length = 325
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGF--VTFGNPRSAVD 95
D + +Y+GGLP+ +E + +F +YG V +K+ D+ T GK GF + + + RS
Sbjct: 31 DTAFIYIGGLPFELSEGDIITIFSQYGEPVWIKLARDKET-GKSRGFAWIKYEDQRSCDL 89
Query: 96 AINDMNGRTIDGRVVRVSEVATRGRKSNSGRD 127
A++++ G TI RV+RV + R RD
Sbjct: 90 AVDNLGGATIMDRVIRVDHARYKPRDDEDMRD 121
>gi|255565552|ref|XP_002523766.1| dc50, putative [Ricinus communis]
gi|223536978|gb|EEF38615.1| dc50, putative [Ricinus communis]
Length = 210
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ + E ++GGL +S ++ +++ F+K+G ++ K+V D+ S R + +GFVTF ++
Sbjct: 1 MSEEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRV 112
+AI +MNG +DGR + V
Sbjct: 61 MEEAIEEMNGMDLDGRTITV 80
>gi|297710828|ref|XP_002832064.1| PREDICTED: RNA-binding motif protein, X-linked-like-3 [Pongo
abelii]
Length = 1051
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M D ++VGGL +E +++ F KYG ++ V ++ DR T + + + FVTF +P
Sbjct: 2 MEADRPEKLFVGGLNLKTDEKALKAEFGKYGRIIKVFLMKDRETNKSRGFAFVTFESPAD 61
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGRK---------SNSGRDQFRH 131
A A DMNG+ +DG+ ++V++ + K +SGR +F H
Sbjct: 62 AKAAARDMNGKCLDGKSIKVAQAIKQAFKNSRWVPPTPGSSGRSRFSH 109
>gi|303320035|ref|XP_003070017.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240109703|gb|EER27872.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320034356|gb|EFW16301.1| U2 snRNP component IST3 [Coccidioides posadasii str. Silveira]
Length = 271
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLPY +E + +F ++G V + +V D+ T + K + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPYDLSEGDILTIFSQFGEPVHLNLVRDKDTGKSKGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G T+ GR++RV
Sbjct: 91 VDNLCGATVMGRLLRV 106
>gi|336272730|ref|XP_003351121.1| hypothetical protein SMAC_06000 [Sordaria macrospora k-hell]
gi|380093684|emb|CCC08648.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 439
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VY GGLPY +E V +F ++G V +K+V D+ T + K +G++ + + RS A
Sbjct: 31 DTAFVYFGGLPYDLSEGDVITIFSQFGEPVFLKLVRDKETGKSKGFGWLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G I GR++RV
Sbjct: 91 VDNLGGAEIGGRLIRV 106
>gi|15822703|gb|AAL07518.1| RNA-binding protein precursor [Nicotiana tabacum]
Length = 277
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S ++VGGL Y +E S+++ F +YG V+ +++ DR T R + +GF++F + A A+
Sbjct: 40 SKLFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASALQ 99
Query: 99 DMNGRTIDGRVVRV 112
M+G+ + GR +RV
Sbjct: 100 AMDGQDLHGRRIRV 113
>gi|403358378|gb|EJY78834.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 403
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGL Y NE + VF ++G VV ++ D+ T + K + F+ + + +S V A
Sbjct: 31 DSAYIYIGGLNYRMNEGDIAIVFSQFGEVVDCRLARDQKTGKSKGFAFLAYEDQKSTVLA 90
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++NG + GR++ V V
Sbjct: 91 VDNLNGIDLCGRLISVDHV 109
>gi|320589446|gb|EFX01907.1| u2 snrnp component ist3 [Grosmannia clavigera kw1407]
Length = 353
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VY GGLP+ +E V +F +YG V +K+ DR T + K +G++ + + RS A
Sbjct: 31 DTAFVYFGGLPFELSEGDVITIFSQYGEPVFLKLARDRETGKSKGFGWLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G +I GR++ V
Sbjct: 91 VDNLGGASISGRLIHV 106
>gi|1395193|dbj|BAA12064.1| RNA-binding protein RZ-1 [Nicotiana sylvestris]
gi|1435062|dbj|BAA06012.1| RNA binding protein RZ-1 [Nicotiana sylvestris]
Length = 209
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVD 95
DDE ++G L +S ++ ++ F+K+G++V K+V D+ S R + +GFVTF R+ D
Sbjct: 3 DDEYRCFIGNLSWSTSDRGLKDAFEKFGNLVDAKVVLDKFSGRSRGFGFVTFDEKRAMED 62
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG +DGR + V +
Sbjct: 63 AIEAMNGVDLDGRDITVDKA 82
>gi|432102020|gb|ELK29840.1| Scaffold attachment factor B1 [Myotis davidii]
Length = 895
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 3/130 (2%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDM 100
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN +
Sbjct: 385 FWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHL 444
Query: 101 NGRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDRSR 158
+ + G+++ V + G+K++ RD + DR N R+ DR +D +
Sbjct: 445 HKTELHGKMISVEKAKNEPAGKKTSDKRDGEGKKEKSSTSDRSANLKREDKADRKDDAKK 504
Query: 159 ERTSSQDRDK 168
S ++ K
Sbjct: 505 GEDGSGEKSK 514
>gi|224149436|ref|XP_002336806.1| predicted protein [Populus trichocarpa]
gi|222836937|gb|EEE75330.1| predicted protein [Populus trichocarpa]
Length = 112
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GGLP+SA++ ++++ F YG V+ +++ DR T R + +GFV++ + SA +A +
Sbjct: 14 SKLFIGGLPWSADDHTLKEAFSGYGEVIEARVIMDRETGRSRGFGFVSYDSSESASEAQS 73
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFR 130
M+G+ + GR VRVS R R S D ++
Sbjct: 74 AMDGQELGGRNVRVSFAEERSRPPRSYNDDYQ 105
>gi|388492070|gb|AFK34101.1| unknown [Lotus japonicus]
Length = 211
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ DE ++GGL +S ++ ++ F+K+G + K+V D+ S R + +GFVTF + ++
Sbjct: 1 MSDVDEYRCFIGGLAWSTSDRKLKDAFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRG 119
+AI+ MNG +DGR + V + +G
Sbjct: 61 MDEAIDAMNGMDLDGRTITVDKTQPQG 87
>gi|123455286|ref|XP_001315389.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121898064|gb|EAY03166.1| hypothetical protein TVAG_345400 [Trichomonas vaginalis G3]
Length = 202
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100
++ V GL Y +++ F K G V V ++ + + K + FVTF P+ A A+++
Sbjct: 7 TILVAGLAYKTTSETIASFFGKIGPVDEVSLMLNSLGKSKGFAFVTFTKPQDADYAVSNF 66
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDRSR 158
NG+ +DGR +RV E+++R +K R +F H+ R RDR DR D SR
Sbjct: 67 NGQILDGRRIRV-EISSRRKKFKLER-KFEMDEYHQNERRLEG-SRDRSSDRNTDDSR 121
>gi|431922339|gb|ELK19430.1| Scaffold attachment factor B1 [Pteropus alecto]
Length = 917
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 408 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 467
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDRSRE 159
+ G+++ V + G+K++ R+ + DR N R+ DR +D +
Sbjct: 468 KTELHGKMISVEKAKNEPAGKKTSDKREGEGKKEKSSASDRSANLKREDKADRKDDAKKG 527
Query: 160 RTSSQDRDK 168
S ++ K
Sbjct: 528 EDGSGEKSK 536
>gi|390478412|ref|XP_002761656.2| PREDICTED: scaffold attachment factor B1 isoform 2 [Callithrix
jacchus]
Length = 848
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 340 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 399
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYN----- 154
+ G+++ V + G+K++ RD + DR N RD DR +
Sbjct: 400 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSANLKRDDKGDRKDNAKKG 459
Query: 155 -DRSRERTSSQD 165
D S E++ QD
Sbjct: 460 EDGSGEKSKDQD 471
>gi|388511641|gb|AFK43882.1| unknown [Lotus japonicus]
Length = 211
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 54/87 (62%), Gaps = 1/87 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ DE ++GGL +S ++ ++ F+K+G + K+V D+ S R + +GFVTF + ++
Sbjct: 1 MSDVDEYRCFIGGLAWSTSDRKLKDAFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDDKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRG 119
+AI+ MNG +DGR + V + +G
Sbjct: 61 MDEAIDAMNGMDLDGRTITVDKAQPQG 87
>gi|302505870|ref|XP_003014892.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371]
gi|291178463|gb|EFE34252.1| conserved hypothetical protein [Arthroderma benhamiae CBS 112371]
Length = 312
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLP+ +E + +F +YG+ V + +V D+ T + + + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPFDISEGDILTIFSQYGNPVHLNLVRDKETGKSRGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEV 115
++++ G T+ GRV+RV V
Sbjct: 91 VDNLGGATVLGRVLRVDHV 109
>gi|171056877|ref|YP_001789226.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
gi|170774322|gb|ACB32461.1| RNP-1 like RNA-binding protein [Leptothrix cholodnii SP-6]
Length = 157
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+YVG L YS ++ + + F ++G+V + K++ DR T R K +GFV G+ A AIN +
Sbjct: 5 LYVGNLAYSVRDEDLNEAFSQFGAVNSAKVMMDRETGRSKGFGFVEMGSDPEAQAAINGL 64
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQF 129
NG+ I GR + V+E R K R +
Sbjct: 65 NGQAIGGRAIVVNEARPREDKPGGFRSPY 93
>gi|403295947|ref|XP_003938883.1| PREDICTED: scaffold attachment factor B1 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 759
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 252 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 311
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYN----- 154
+ G+++ V + G+K++ RD + DR N RD DR +
Sbjct: 312 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSANLKRDDKGDRKDNAKKG 371
Query: 155 -DRSRERTSSQD 165
D S E++ QD
Sbjct: 372 EDGSGEKSKDQD 383
>gi|67536990|ref|XP_662269.1| hypothetical protein AN4665.2 [Aspergillus nidulans FGSC A4]
gi|40741517|gb|EAA60707.1| hypothetical protein AN4665.2 [Aspergillus nidulans FGSC A4]
gi|259482500|tpe|CBF77042.1| TPA: hypothetical protein ANIA_04665 [Aspergillus nidulans FGSC A4]
Length = 279
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLP+ +E + +F +YG V + +V D+ T + + + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPFDLSEGDIVTIFSQYGEPVHINLVRDKETGKSRGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G T+ GRV+RV
Sbjct: 91 VDNLGGATVLGRVLRV 106
>gi|403295945|ref|XP_003938882.1| PREDICTED: scaffold attachment factor B1 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 848
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 340 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 399
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYN----- 154
+ G+++ V + G+K++ RD + DR N RD DR +
Sbjct: 400 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSANLKRDDKGDRKDNAKKG 459
Query: 155 -DRSRERTSSQD 165
D S E++ QD
Sbjct: 460 EDGSGEKSKDQD 471
>gi|195621182|gb|ACG32421.1| glycine-rich RNA-binding protein 2 [Zea mays]
Length = 146
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VG L ++ ++ S+ F YG V+ KI+ DR T R + +GFVTF +
Sbjct: 5 DVEYRCFVGXLAWATDDHSLNNAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEDAMRS 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGKELDGRNITVNEA 84
>gi|68064271|ref|XP_674124.1| u1 small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56492466|emb|CAH97184.1| u1 small nuclear ribonucleoprotein, putative [Plasmodium berghei]
Length = 319
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
++ D + ++++G L Y NE ++K F+ YG + VK++ D+ + + Y F+ F + +S
Sbjct: 41 ISSDLKKTLFIGRLSYEVNEKKLKKEFETYGKIKYVKVIYDQDKKPRGYAFIEFEHTKSV 100
Query: 94 VDAINDMNGRTIDGRVVRV 112
DA N +G+ ID R + V
Sbjct: 101 TDAYNLADGKKIDNRRILV 119
>gi|18406831|ref|NP_564759.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|30696446|ref|NP_849832.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|2462758|gb|AAB71977.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|21593771|gb|AAM65738.1| RNA binding protein, putative [Arabidopsis thaliana]
gi|26983818|gb|AAN86161.1| putative glycine-rich RNA binding protein [Arabidopsis thaliana]
gi|62321068|dbj|BAD94150.1| putative RNA-binding protein [Arabidopsis thaliana]
gi|332195593|gb|AEE33714.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332195594|gb|AEE33715.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 292
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
ES ++VGGL + E + FD+YG + +I+ R T R + +GF+TF + R A DAI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAI 70
Query: 98 NDMNGRTIDGRVVRVSEVATR 118
M+GR + +V+ V++ +
Sbjct: 71 KHMHGRELGNKVISVNKAEPK 91
>gi|361128698|gb|EHL00628.1| putative Cold-inducible RNA-binding protein [Glarea lozoyensis
74030]
Length = 170
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GGL + +E+++R+ F+++G+V +V DR T R + +GFV +G A AI
Sbjct: 2 SKLFIGGLAWHTDENALRQKFEEFGAVEEAVVVKDRDTGRSRGFGFVRYGQESDAEAAIT 61
Query: 99 DMNGRTIDGRVVRV 112
MN DGR +RV
Sbjct: 62 AMNNIEFDGRTIRV 75
>gi|440804413|gb|ELR25290.1| RNA recognition motif domain containing protein [Acanthamoeba
castellanii str. Neff]
Length = 146
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
++VGGL +S +++S+R F+++G V+ K++ DR T + + +GFVTF + A A +
Sbjct: 5 LFVGGLSWSTDDNSLRSAFEQHGEVIDAKVILDRDTGKSRGFGFVTFSSADEAEAAKGAL 64
Query: 101 NGRTIDGRVVRVSEVATR 118
N +DGR +RV + R
Sbjct: 65 NQTDLDGREIRVDSASDR 82
>gi|326509231|dbj|BAJ91532.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326510271|dbj|BAJ87352.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 252
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
S ++VGGL Y+ +E S+R F YG ++ KI+ DR T R + +GF+T+ A AI
Sbjct: 30 SSKLFVGGLSYTTDEGSLRDAFSHYGEIIDAKIIVDRDTGRSRGFGFITYAAEEQASSAI 89
Query: 98 NDMNGRTIDGRVVRVSEVATR 118
++G+ + GR +RVS R
Sbjct: 90 MALDGKDLHGRNLRVSAATER 110
>gi|258570729|ref|XP_002544168.1| U2 snRNP component IST3 [Uncinocarpus reesii 1704]
gi|237904438|gb|EEP78839.1| U2 snRNP component IST3 [Uncinocarpus reesii 1704]
Length = 263
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLPY +E + +F ++G V + +V D+ T + K + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPYDLSEGDILTIFSQFGEPVHLNLVRDKETGKSKGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G I GR++RV
Sbjct: 91 VDNLCGANIMGRLLRV 106
>gi|77627748|ref|NP_001029290.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|60414777|sp|Q5R1W5.3|SRSF2_PANTR RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|56342346|dbj|BAD74033.1| arginine/serine-rich 2 splicing factor [Pan troglodytes verus]
Length = 221
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|351723119|ref|NP_001235732.1| uncharacterized protein LOC100526902 [Glycine max]
gi|255631115|gb|ACU15923.1| unknown [Glycine max]
Length = 176
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ +E ++GGL +S ++ ++ F+K+G ++ K+V D+ S R + +GFVTF + ++
Sbjct: 1 MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRV 112
+AI+ MNG +DGR + V
Sbjct: 61 MDEAIDAMNGMDLDGRTITV 80
>gi|255585355|ref|XP_002533374.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223526781|gb|EEF29005.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 276
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M +E+ ++VGGL + E + F++YG +V +++ +R T R + +GF+TF + RS
Sbjct: 1 MAGKEENRIFVGGLSWDVTERQLENAFNRYGKIVECQVMLERDTGRPRGFGFITFSDRRS 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATR 118
DAI +M+GR RV+ V++ +
Sbjct: 61 MDDAIREMHGREFGDRVISVNKAQPK 86
>gi|357635300|ref|ZP_09133178.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
gi|357583854|gb|EHJ49187.1| RNP-1 like RNA-binding protein [Desulfovibrio sp. FW1012B]
Length = 92
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG LP+ EDSVR +F +YG V +VK+++DR T + + +GFV + +A +AI
Sbjct: 4 NIYVGNLPFRTTEDSVRDLFARYGEVQSVKLISDRETGKPRGFGFVEMDDDAAADEAIKS 63
Query: 100 MNGRTIDGRVVRVSEVATR 118
++G +GR ++V+E R
Sbjct: 64 LDGADFEGRNLKVNEAKPR 82
>gi|62898065|dbj|BAD96972.1| splicing factor, arginine/serine-rich 2 variant [Homo sapiens]
Length = 221
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|405967042|gb|EKC32256.1| Splicing factor, arginine/serine-rich 2 [Crassostrea gigas]
Length = 183
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAV 94
ID +S+ V L Y + +R+ FDKYG V V I DR TR + + FV F + R A
Sbjct: 10 IDGMTSLKVDNLTYRTTPEDLRRAFDKYGDVGDVYIPRDRFTRESRGFAFVRFYDKRDAE 69
Query: 95 DAINDMNGRTIDGRVVRVSEVATRGRKSNSGR 126
DA++ M+G +DGR +RV ++A GR + R
Sbjct: 70 DALDSMDGAIMDGRELRV-QMARYGRPTEPYR 100
>gi|342883559|gb|EGU84022.1| hypothetical protein FOXB_05442 [Fusarium oxysporum Fo5176]
Length = 318
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + VY GGLPY +E V +F ++G V +K+ D+ T + K +G++ + + RS A
Sbjct: 31 DTAYVYFGGLPYELSEGDVITIFSQFGEPVFLKLARDKETGKSKGFGWLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRVSEVATRGR 120
++++ G I GR++ V + R
Sbjct: 91 VDNLGGADIGGRLISVDHARYKAR 114
>gi|156336337|ref|XP_001619698.1| hypothetical protein NEMVEDRAFT_v1g223921 [Nematostella vectensis]
gi|156203401|gb|EDO27598.1| predicted protein [Nematostella vectensis]
Length = 189
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVND--------RSTRGKCYGF 84
M D + VY G LP+ +D ++ VF+ +V V IV + + R + +GF
Sbjct: 1 MVFADPNKVYAGNLPFKLTQDELKAVFEAESLTVTDVLIVKEPRNEFYQQQEPRSRGFGF 60
Query: 85 VTFGNPRSAVDAINDMNGRTIDGRVVRVS 113
VTF NP A A+ +NG+ + GR ++++
Sbjct: 61 VTFANPEDAQTAVKSLNGKEVQGRTLKIA 89
>gi|410911524|ref|XP_003969240.1| PREDICTED: uncharacterized protein LOC101080136 isoform 2 [Takifugu
rubripes]
Length = 374
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
S VY+G L Y A E+ V + F YG ++ V + N YGFV F +PR A DA+ D
Sbjct: 2 SRVYIGRLSYRARENDVERFFKGYGKILEVDLKN-------GYGFVEFDDPRDADDAVYD 54
Query: 100 MNGRTIDG-RVVRVSEVATRGRKSNSGRDQFRH-GHRHKGRDR 140
+NG+ + G RV+ R SGR + R G+ GRDR
Sbjct: 55 LNGKELCGERVIVEHTKGPRRDGGYSGRSKPRPGGYGRWGRDR 97
>gi|315057077|ref|XP_003177913.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
gi|311339759|gb|EFQ98961.1| hypothetical protein MGYG_01973 [Arthroderma gypseum CBS 118893]
Length = 152
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
+++GGL + +D++R+ F ++G++ +V DR T R + +GFV F + A A+N M
Sbjct: 6 LFIGGLAWHTTDDTLREGFSQFGTIEEAIVVKDRDTNRSRGFGFVRFSSEAEADAALNAM 65
Query: 101 NGRTIDGRVVRV 112
N + DGRV+RV
Sbjct: 66 NNQEFDGRVIRV 77
>gi|62087140|dbj|BAD92017.1| scaffold attachment factor B variant [Homo sapiens]
Length = 772
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 429 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 488
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNN 143
+ G+++ V + G+K++ RD + DR N
Sbjct: 489 KTELHGKMISVEKAKNEPVGKKTSDKRDSDGKKEKSSNSDRSTN 532
>gi|148702654|gb|EDL34601.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_a [Mus
musculus]
Length = 241
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|397494985|ref|XP_003818346.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 3 [Pan
paniscus]
gi|119609854|gb|EAW89448.1| splicing factor, arginine/serine-rich 2, isoform CRA_g [Homo
sapiens]
gi|194387574|dbj|BAG60151.1| unnamed protein product [Homo sapiens]
Length = 209
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|333381249|ref|ZP_08472931.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
gi|332830219|gb|EGK02847.1| hypothetical protein HMPREF9455_01097 [Dysgonomonas gadei ATCC
BAA-286]
Length = 107
Score = 58.9 bits (141), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++++ GL YS N++ ++ +F +YG + + K++ D++T R K YGFV + + AI +
Sbjct: 2 NIFIAGLSYSINDNDLKDLFSEYGEITSAKVIMDKATGRSKGYGFVELADNAAGQKAIEE 61
Query: 100 MNGRTIDGRVVRVSEVATR 118
+NG DGR + VSE R
Sbjct: 62 LNGAEYDGRTISVSEARPR 80
>gi|334349632|ref|XP_001381460.2| PREDICTED: RNA-binding motif protein, X-linked 2-like, partial
[Monodelphis domestica]
Length = 332
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 44 VGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNG 102
+GGLPY E + VF +YG +V + +V D+ T + K + F+ + + RS + A+++ NG
Sbjct: 1 LGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNG 60
Query: 103 RTIDGRVVRVSEVA 116
I GR +RV VA
Sbjct: 61 IKIRGRTIRVDHVA 74
>gi|66809079|ref|XP_638262.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|60466725|gb|EAL64776.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 1035
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 29 EERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTF 87
E + I++ S +Y+G + ++ ED VR +F ++G V++ ++ + T + K +GFV F
Sbjct: 758 ESAPPVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDF 817
Query: 88 GNPRSAVDAINDMNGRTIDGRVVRV 112
+SA DAI MNG + GR ++V
Sbjct: 818 ELKKSADDAIATMNGFELLGRSIKV 842
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAV 94
T D+S +YVG L +S ED +R F +G++ ++ + D S + K Y F+ + N SA
Sbjct: 583 TSQDQSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDASGKSKGYAFIEYDNQESAA 642
Query: 95 DAINDMNGRTIDGRVVRVS 113
A+ M + GR ++V+
Sbjct: 643 KALQSMTNYVMCGRAIKVA 661
>gi|225718494|gb|ACO15093.1| RNA-binding motif protein, X-linked 2 [Caligus clemensi]
Length = 359
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGL Y +E + +F +YG VV + +V D T + K + F+ + + RS + A
Sbjct: 35 DSAWIFMGGLNYELSEGDIISIFSQYGEVVHINLVRDGKTGKSKGFAFLCYEDQRSTILA 94
Query: 97 INDMNGRTIDGRVVRVSEVAT 117
++D+N T+ R +RV V T
Sbjct: 95 VDDLNAITLLKRTIRVDHVQT 115
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
VYV L S ED+++++F K+G + +V +V + +C+GFV F NP A A+ D+N
Sbjct: 223 VYVKNLSESTTEDNLKEMFGKFGPITSVIVVRADDGKSRCFGFVNFENPDDAARAVEDLN 282
Query: 102 GRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRY 149
G+ +D + + V + + +++F ++ D N+ + Y
Sbjct: 283 GKKLDDKELYVGRAQKKSEREMQLKEKFEKSNKETA---DKNQGTNLY 327
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKC-YGFVTFGNPRSAVDAIN 98
+S+YVG L S + + VF + GSVV+V++ D +TR Y +V F +P A A+
Sbjct: 42 TSLYVGDLDVSVQDAQLFDVFSQVGSVVSVRVCRDVNTRMSLGYAYVNFSSPADAARAME 101
Query: 99 DMNGRTIDGRVVRV 112
+N ++G+ +R+
Sbjct: 102 MLNFTPVNGKPIRI 115
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 101/229 (44%), Gaps = 18/229 (7%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
+++++ L S + ++ F +G++++ K+ + S K YGFV + SA +AIN+
Sbjct: 130 ANIFIKNLDKSIDNKALFDTFSAFGTILSCKVATEISGESKGYGFVQYEQDESAQNAINE 189
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNS-GRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDRSR 158
+NG ++ + V V + + N G +F + + ++ + D ++ +
Sbjct: 190 LNGMLLNDKKVYVGPFVRKQERENVFGSPKFNNVYV---KNLSESTTEDNLKEMFGKFGP 246
Query: 159 ERTSSQDR-DKGMGREYEHVRDHDRDPSRDRFSDEDQGRDLENNDQGHTRIHDPEL--AN 215
+ R D G R + V + D D R +E D ++ D EL
Sbjct: 247 ITSVIVVRADDGKSRCFGFVNFENPD---------DAARAVE--DLNGKKLDDKELYVGR 295
Query: 216 WERKSELDMTRDREIDGTDDYHTIVDEGKDHLSRKRDGSTVDDHQLREF 264
++KSE +M + + ++ ++G + + DGS DD +L+E
Sbjct: 296 AQKKSEREMQLKEKFEKSNKETADKNQGTNLYLKNLDGSVDDDEKLKEL 344
>gi|119609849|gb|EAW89443.1| splicing factor, arginine/serine-rich 2, isoform CRA_d [Homo
sapiens]
gi|193783682|dbj|BAG53593.1| unnamed protein product [Homo sapiens]
Length = 209
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGNPRSAVDAIN 98
+S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F + R A DA++
Sbjct: 2 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMD 61
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNS 124
M+G +DGR +RV ++A GR +S
Sbjct: 62 AMDGAVLDGRELRV-QMARYGRPPDS 86
>gi|312373610|gb|EFR21320.1| hypothetical protein AND_17210 [Anopheles darlingi]
Length = 170
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ID S+ V L Y D +R+VF++ G V + I DR TR + + FV F +
Sbjct: 6 RPPPRIDGMISLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYD 65
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKG 137
R A DA++ M+GR +DGR +RV ++A GR ++ R G+RH G
Sbjct: 66 KRDAEDALDAMDGRMLDGRELRV-QMARYGRPTSPQRRG--GGNRHNG 110
>gi|357119205|ref|XP_003561336.1| PREDICTED: uncharacterized protein LOC100827239 [Brachypodium
distachyon]
Length = 314
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
M +ES ++VGGL + +E + + F ++G VV +I+ +R T R + +GFVTF +PR+
Sbjct: 1 MAGKEESRIFVGGLSFHTDERKLEEAFRRFGKVVDAQIMLERHTNRHRGFGFVTFSDPRA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEV 115
AI++M+ + +DGR + V+
Sbjct: 61 VESAISEMHTKELDGRTISVNRA 83
>gi|255547195|ref|XP_002514655.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
gi|223546259|gb|EEF47761.1| glycine-rich RNA-binding protein, putative [Ricinus communis]
Length = 267
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S V+VGG+ Y ++ S+R+ F KYG V+ +++ DR T R + + FVT+ + A AI
Sbjct: 40 SKVFVGGISYQTDDTSLREAFGKYGEVIEARVIIDRETGRSRGFAFVTYTSSEEASSAIQ 99
Query: 99 DMNGRTIDGRVVRVSEVATRGRKS 122
++G+ + GR VRV+ R R S
Sbjct: 100 ALDGQDLHGRRVRVNYANDRPRTS 123
>gi|359807285|ref|NP_001240860.1| uncharacterized protein LOC100815224 [Glycine max]
gi|255645181|gb|ACU23088.1| unknown [Glycine max]
Length = 208
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M+ +E ++GGL +S ++ ++ F+K+G ++ K+V D+ S R + +GFVTF + ++
Sbjct: 1 MSDVEEFRCFIGGLAWSTSDRKLKDTFEKFGKLIEAKVVVDKFSGRSRGFGFVTFDDKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRV 112
+AI+ MNG +DGR + V
Sbjct: 61 MDEAIDAMNGIDLDGRTITV 80
>gi|90076648|dbj|BAE88004.1| unnamed protein product [Macaca fascicularis]
Length = 210
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|426346598|ref|XP_004040963.1| PREDICTED: serine/arginine-rich splicing factor 2 [Gorilla gorilla
gorilla]
Length = 206
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|332260181|ref|XP_003279164.1| PREDICTED: LOW QUALITY PROTEIN: serine/arginine-rich splicing
factor 2 [Nomascus leucogenys]
Length = 221
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|6755478|ref|NP_035488.1| serine/arginine-rich splicing factor 2 [Mus musculus]
gi|47271443|ref|NP_003007.2| serine/arginine-rich splicing factor 2 [Homo sapiens]
gi|57528425|ref|NP_001009720.1| serine/arginine-rich splicing factor 2 [Rattus norvegicus]
gi|77735589|ref|NP_001029490.1| serine/arginine-rich splicing factor 2 [Bos taurus]
gi|299758481|ref|NP_001177668.1| splicing factor, arginine/serine-rich 2 [Macaca mulatta]
gi|306482646|ref|NP_001182356.1| serine/arginine-rich splicing factor 2 [Homo sapiens]
gi|126308709|ref|XP_001371367.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Monodelphis
domestica]
gi|296203283|ref|XP_002748811.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 1
[Callithrix jacchus]
gi|395825870|ref|XP_003786143.1| PREDICTED: serine/arginine-rich splicing factor 2 [Otolemur
garnettii]
gi|397494981|ref|XP_003818344.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 1 [Pan
paniscus]
gi|397494983|ref|XP_003818345.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 2 [Pan
paniscus]
gi|402901195|ref|XP_003913541.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 1 [Papio
anubis]
gi|402901197|ref|XP_003913542.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 2 [Papio
anubis]
gi|402901199|ref|XP_003913543.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 3 [Papio
anubis]
gi|402901201|ref|XP_003913544.1| PREDICTED: serine/arginine-rich splicing factor 2 isoform 4 [Papio
anubis]
gi|18280933|sp|Q62093.4|SRSF2_MOUSE RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Protein PR264; AltName: Full=Putative myelin
regulatory factor 1; Short=MRF-1; AltName: Full=Splicing
component, 35 kDa; AltName: Full=Splicing factor SC35;
Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|52783335|sp|Q6PDU1.3|SRSF2_RAT RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|60416437|sp|Q01130.4|SRSF2_HUMAN RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Protein PR264; AltName: Full=Splicing component, 35
kDa; AltName: Full=Splicing factor SC35; Short=SC-35;
AltName: Full=Splicing factor, arginine/serine-rich 2
gi|110287957|sp|Q3MHR5.3|SRSF2_BOVIN RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|539663|pir||A42701 splicing factor SFRS2 - human
gi|35597|emb|CAA44307.1| PR 264 [Homo sapiens]
gi|455419|emb|CAA53383.1| PR264/SC35 [Homo sapiens]
gi|3335676|gb|AAC71000.1| splicing factor SC35 [Mus musculus]
gi|12653143|gb|AAH00339.1| SFRS2 protein [Homo sapiens]
gi|12654915|gb|AAH01303.1| SFRS2 protein [Homo sapiens]
gi|13529557|gb|AAH05493.1| Sfrs2 protein [Mus musculus]
gi|26351947|dbj|BAC39610.1| unnamed protein product [Mus musculus]
gi|26352962|dbj|BAC40111.1| unnamed protein product [Mus musculus]
gi|30583339|gb|AAP35914.1| splicing factor, arginine/serine-rich 2 [Homo sapiens]
gi|34849641|gb|AAH58508.1| Splicing factor, arginine/serine-rich 2 [Rattus norvegicus]
gi|47123339|gb|AAH70086.1| Splicing factor, arginine/serine-rich 2 [Homo sapiens]
gi|61359244|gb|AAX41688.1| splicing factor arginine/serine-rich 2 [synthetic construct]
gi|67969334|dbj|BAE01019.1| unnamed protein product [Macaca fascicularis]
gi|74227066|dbj|BAE38330.1| unnamed protein product [Mus musculus]
gi|75775273|gb|AAI05139.1| Splicing factor, arginine/serine-rich 2 [Bos taurus]
gi|90076288|dbj|BAE87824.1| unnamed protein product [Macaca fascicularis]
gi|119609845|gb|EAW89439.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|119609846|gb|EAW89440.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|119609851|gb|EAW89445.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|119609853|gb|EAW89447.1| splicing factor, arginine/serine-rich 2, isoform CRA_a [Homo
sapiens]
gi|123980614|gb|ABM82136.1| splicing factor, arginine/serine-rich 2 [synthetic construct]
gi|123995435|gb|ABM85319.1| splicing factor, arginine/serine-rich 2 [synthetic construct]
gi|148702655|gb|EDL34602.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_b [Mus
musculus]
gi|148702656|gb|EDL34603.1| splicing factor, arginine/serine-rich 2 (SC-35), isoform CRA_b [Mus
musculus]
gi|149054884|gb|EDM06701.1| similar to splicing factor, arginine/serine-rich 2, isoform CRA_a
[Rattus norvegicus]
gi|149054885|gb|EDM06702.1| similar to splicing factor, arginine/serine-rich 2, isoform CRA_a
[Rattus norvegicus]
gi|149054887|gb|EDM06704.1| similar to splicing factor, arginine/serine-rich 2, isoform CRA_a
[Rattus norvegicus]
gi|168277776|dbj|BAG10866.1| splicing factor, arginine/serine-rich 2 [synthetic construct]
gi|193784944|dbj|BAG54097.1| unnamed protein product [Homo sapiens]
gi|296476083|tpg|DAA18198.1| TPA: splicing factor, arginine/serine-rich 2 [Bos taurus]
gi|380782971|gb|AFE63361.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|380815556|gb|AFE79652.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|384941848|gb|AFI34529.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|384948766|gb|AFI37988.1| serine/arginine-rich splicing factor 2 [Macaca mulatta]
gi|410226692|gb|JAA10565.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410226694|gb|JAA10566.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410262826|gb|JAA19379.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410262828|gb|JAA19380.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410299756|gb|JAA28478.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410299760|gb|JAA28480.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410299766|gb|JAA28483.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410338225|gb|JAA38059.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410338227|gb|JAA38060.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410338229|gb|JAA38061.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|410338231|gb|JAA38062.1| serine/arginine-rich splicing factor 2 [Pan troglodytes]
gi|410338233|gb|JAA38063.1| splicing factor, arginine/serine-rich 2 [Pan troglodytes]
gi|228504|prf||1805195B RNA-binding protein PR264
Length = 221
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|359320233|ref|XP_003639286.1| PREDICTED: serine/arginine-rich splicing factor 2-like isoform 1
[Canis lupus familiaris]
gi|359320235|ref|XP_003639287.1| PREDICTED: serine/arginine-rich splicing factor 2-like isoform 2
[Canis lupus familiaris]
Length = 221
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|348509946|ref|XP_003442507.1| PREDICTED: serine/arginine-rich splicing factor 2-like [Oreochromis
niloticus]
Length = 218
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R +D +S+ V L Y + +++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVDGMTSLKVDNLTYRTSPEALRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGALLDGRELRV-QMARYGRPPDS 98
>gi|116175283|ref|NP_001070697.1| serine/arginine-rich splicing factor 2 [Sus scrofa]
gi|122131841|sp|Q06A98.1|SRSF2_PIG RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Splicing component, 35 kDa; AltName: Full=Splicing
factor SC35; Short=SC-35; AltName: Full=Splicing factor,
arginine/serine-rich 2
gi|115371755|gb|ABI96202.1| SFRS2 [Sus scrofa]
Length = 221
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|149240785|ref|XP_001526223.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450346|gb|EDK44602.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 601
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSAVDAINDM 100
++VG L N+++++K F K+GS+ ++ D +++R + YGFVTFG A +A+ M
Sbjct: 195 IFVGDLSSEVNDEALKKAFTKFGSLKQAHVMWDMQTSRSRGYGFVTFGKQEDAENALQSM 254
Query: 101 NGRTIDGRVVR 111
NG + GR +R
Sbjct: 255 NGEWLGGRAIR 265
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100
+YVG L SA+E+ + ++F + + ++K++ND++ G Y F+ F A A+N +
Sbjct: 102 LYVGNLAKSASEEQINEIFSSVSNPIKSIKLLNDKNKLGFNYAFIEFNESEDAEKALNSL 161
Query: 101 NGRTIDGRVVRV 112
NG+ ++G ++V
Sbjct: 162 NGKDVNGSDIKV 173
>gi|350580651|ref|XP_003480867.1| PREDICTED: scaffold attachment factor B1-like isoform 2 [Sus
scrofa]
Length = 916
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDRSRE 159
+ G+++ V + G+K++ R+ + DR N R+ DR +D +
Sbjct: 469 KTELHGKMISVEKAKNEPVGKKTSDKREGEGKKEKSNNADRSANLKREDKIDRKDDAKKS 528
Query: 160 RTSSQDRDK 168
S ++ K
Sbjct: 529 EDGSGEKSK 537
>gi|328703269|ref|XP_001951731.2| PREDICTED: hypothetical protein LOC100164759 [Acyrthosiphon pisum]
Length = 911
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRG-KCYGFVTFGNPRSAVDAINDM 100
++V GL ++++F KYG VV K+V + T G +CYGFVT + A +I ++
Sbjct: 404 IWVSGLSSITKATDLKQLFSKYGKVVGAKVVTNAKTPGARCYGFVTLSSAEDANRSIENL 463
Query: 101 NGRTIDGRVVRVSEVATR 118
+ + GRV+ V V+++
Sbjct: 464 HKTELHGRVISVERVSSK 481
>gi|353242335|emb|CCA73988.1| related to RNA-binding proteins [Piriformospora indica DSM 11827]
Length = 274
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +++GGL Y E V VF +YG VV + + ++ST + + + F+ + + RS V A
Sbjct: 30 DSAYIFIGGLNYELTEGDVITVFSQYGEVVDIDMPREKSTGKRRGFAFLMYEDQRSTVLA 89
Query: 97 INDMNGRTIDGRVVRVSEVATRGRK 121
++++NG + GR +RV V +K
Sbjct: 90 VDNLNGAELAGRTLRVDHVQNYKQK 114
>gi|47604918|ref|NP_001001305.1| serine/arginine-rich splicing factor 2 [Gallus gallus]
gi|266991|sp|P30352.1|SRSF2_CHICK RecName: Full=Serine/arginine-rich splicing factor 2; AltName:
Full=Protein PR264; AltName: Full=Splicing component, 35
kDa; AltName: Full=Splicing factor SC35; Short=SC-35;
AltName: Full=Splicing factor, arginine/serine-rich 2
gi|63752|emb|CAA44306.1| PR 264 [Gallus gallus]
gi|228503|prf||1805195A RNA-binding protein PR264
Length = 221
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|449438165|ref|XP_004136860.1| PREDICTED: uncharacterized protein LOC101215898 [Cucumis sativus]
gi|449478936|ref|XP_004155458.1| PREDICTED: uncharacterized protein LOC101227324 [Cucumis sativus]
Length = 211
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 55/96 (57%), Gaps = 4/96 (4%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRS 92
M + E ++GGL +S ++ +++ F+K+G +V K+V D+ S R + +GFVTF ++
Sbjct: 1 MADEVEYRCFIGGLSWSTSDRGLKEAFEKFGHLVEAKVVVDKFSGRSRGFGFVTFDEKKA 60
Query: 93 AVDAINDMNGRTIDGRVVRVSEVATRGRKSNSGRDQ 128
+AI MNG +DGR + V + SGRD
Sbjct: 61 MDEAIKAMNGMDLDGRSITVDKAQP---NQGSGRDH 93
>gi|164427760|ref|XP_965121.2| hypothetical protein NCU02736 [Neurospora crassa OR74A]
gi|157071873|gb|EAA35885.2| predicted protein [Neurospora crassa OR74A]
Length = 200
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+ ++VGGL ++ +++ +R F+++G+V +V DR T R + +GFV +GN A +AI
Sbjct: 2 AKLFVGGLSWNTDDNMLRAKFEEFGAVEEAVVVKDRDTGRSRGFGFVRYGNDADAENAIA 61
Query: 99 DMNGRTIDGRVVRVSEVATR 118
+M+G+ DGR VRV + + R
Sbjct: 62 NMDGQEFDGRRVRVDKASDR 81
>gi|78356222|ref|YP_387671.1| RNP-1 like RNA-binding protein [Desulfovibrio alaskensis G20]
gi|78218627|gb|ABB37976.1| RNP-1 like RNA-binding protein [Desulfovibrio alaskensis G20]
Length = 114
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG L Y +ED +R F+++G+V V+I+ D T R K +GFV A AI
Sbjct: 2 NIYVGNLSYQMSEDDLRGAFEEFGAVDKVRIITDHDTGRSKGFGFVEMAEDSEANAAIEA 61
Query: 100 MNGRTIDGRVVRVSEVATR 118
+NGR + GR + V+E R
Sbjct: 62 LNGREMGGRSITVNEARPR 80
>gi|426346594|ref|XP_004040961.1| PREDICTED: serine/arginine-rich splicing factor 2 [Gorilla gorilla
gorilla]
Length = 219
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|224074970|ref|XP_002194754.1| PREDICTED: serine/arginine-rich splicing factor 2 [Taeniopygia
guttata]
Length = 221
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|345786712|ref|XP_542146.3| PREDICTED: scaffold attachment factor B1 isoform 2 [Canis lupus
familiaris]
Length = 916
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN ++
Sbjct: 409 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCINHLH 468
Query: 102 GRTIDGRVVRVSEVATR--GRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYND 155
+ G+++ V + G+K++ R+ + DR N R+ DR D
Sbjct: 469 KTELHGKMISVEKAKNEPTGKKASEKREGEGKKEKSSTSDRSANLKREDKADRKED 524
>gi|270014159|gb|EFA10607.1| hypothetical protein TcasGA2_TC012868 [Tribolium castaneum]
Length = 424
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
S VYVGGLPY E + + F YG + V I N YGFV F + R A DA+ +
Sbjct: 4 SRVYVGGLPYGTTERDLERFFRGYGRMRDVLIKNG-------YGFVEFDDHRDADDAVYE 56
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRY 149
+NG+ + G V V R R + GRDQ+ H+ +R R Y
Sbjct: 57 LNGKKLLGERVTVE----RARGTPRGRDQWSSRSDHRSHERYGPPTRTNY 102
>gi|156058602|ref|XP_001595224.1| hypothetical protein SS1G_03313 [Sclerotinia sclerotiorum 1980]
gi|154701100|gb|EDO00839.1| hypothetical protein SS1G_03313 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 269
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + +Y+GGLP+ +E V +F +YG + +V D+ T + K + F+ + + RS A
Sbjct: 31 DTAYIYIGGLPFELSEGDVLTIFSQYGEPTYINLVRDKETGKSKGFAFLKYEDQRSTDLA 90
Query: 97 INDMNGRTIDGRVVRV 112
++++ G I GR ++V
Sbjct: 91 VDNLGGAVIAGRTLKV 106
>gi|91091338|ref|XP_966697.1| PREDICTED: similar to hnRNP protein [Tribolium castaneum]
Length = 282
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 11/111 (9%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99
S VYVGGLPY E + + F YG + V I N YGFV F + R A DA+ +
Sbjct: 4 SRVYVGGLPYGTTERDLERFFRGYGRMRDVLIKN-------GYGFVEFDDHRDADDAVYE 56
Query: 100 MNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQ 150
+NG+ + G V V R R + GRDQ+ H+ +R R Y+
Sbjct: 57 LNGKKLLGERVTVE----RARGTPRGRDQWSSRSDHRSHERYGPPTRTNYR 103
>gi|302780311|ref|XP_002971930.1| hypothetical protein SELMODRAFT_172546 [Selaginella moellendorffii]
gi|300160229|gb|EFJ26847.1| hypothetical protein SELMODRAFT_172546 [Selaginella moellendorffii]
Length = 173
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ +E ++GGL +S + S+ F YGS++ K+V DR T R + +GFVTF + S
Sbjct: 1 MKEEFRCFIGGLSWSTTDRSLETAFRPYGSIIEAKVVFDRETNRSRGFGFVTFEDEESME 60
Query: 95 DAINDMNGRTIDGRVVRVSEV 115
+AI M+ + ++GR + VS+
Sbjct: 61 NAIRKMHNQELEGRSITVSKA 81
>gi|291002051|ref|XP_002683592.1| RRM motif-containing protein [Naegleria gruberi]
gi|284097221|gb|EFC50848.1| RRM motif-containing protein [Naegleria gruberi]
Length = 284
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 82/169 (48%), Gaps = 23/169 (13%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIV---NDRSTRGKCYGFVTFGNPRSAVDA 96
+ +Y+GGL + E + VF +YG +V + +V + +++G C F+ + + RS + A
Sbjct: 35 AYIYIGGLDFRLTEGDLLSVFSQYGEIVDIDLVREEQELTSKGFC--FIAYEDVRSTILA 92
Query: 97 INDMNGRTIDGRVVRVSEVATRGRK--------SNSGRDQFRHGHRHKGRDRDNNRHRDR 148
I+++NG + GR++ V +K NSGR+ R+ G R NNR++
Sbjct: 93 IDNLNGIELGGRIICVDHAPNYYKKIVEDPEEQQNSGRNGGRNSSSTTG--RFNNRYQ-- 148
Query: 149 YQDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRDPSRDRFSDEDQGRD 197
QD+ + + T +D G Y+ V+ + D + D + RD
Sbjct: 149 -QDKKENVPKYETMEKD-----GMIYKKVKKANDDFEWTLYHDAMKKRD 191
>gi|387018630|gb|AFJ51433.1| Serine/arginine-rich splicing factor 2 [Crotalus adamanteus]
Length = 221
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + D++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|334326541|ref|XP_001375983.2| PREDICTED: scaffold attachment factor B2 [Monodelphis domestica]
Length = 1181
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDM 100
++V GL + ++ +F KYG VV K+V N RS +CYGFVT A IN +
Sbjct: 409 LWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSDEATKCINHL 468
Query: 101 NGRTIDGRVVRVSEVATR--GRKSNSGRD------QFRHGHRHKGRDRDNNRHRDRYQDR 152
+ + GR++ V + G+K + +D + G RH D + R + + +
Sbjct: 469 HRTELHGRMISVEKAKNEPAGKKPSDRKDCEIKKEKSSSGERHHSTDSRSERTVIKSEKK 528
Query: 153 YNDRSRERTSSQDRDK 168
+ RS +R +D+D+
Sbjct: 529 EDKRSEDRKDEKDQDE 544
>gi|297819328|ref|XP_002877547.1| hypothetical protein ARALYDRAFT_905943 [Arabidopsis lyrata subsp.
lyrata]
gi|297323385|gb|EFH53806.1| hypothetical protein ARALYDRAFT_905943 [Arabidopsis lyrata subsp.
lyrata]
Length = 316
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 1/72 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
VYVG +P+ E + VF +YG +V V ++ D+ T + K + F+ + + RS V A++++
Sbjct: 38 VYVGCIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTVLAVDNL 97
Query: 101 NGRTIDGRVVRV 112
NG + GR ++V
Sbjct: 98 NGALVLGRTIKV 109
>gi|41054475|ref|NP_955945.1| serine/arginine-rich splicing factor 2b [Danio rerio]
gi|28278933|gb|AAH45480.1| Zgc:55876 [Danio rerio]
Length = 218
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R +D +S+ V L Y + +++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVDGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAILDGRELRV-QMARYGRPPDS 98
>gi|338726595|ref|XP_001916833.2| PREDICTED: LOW QUALITY PROTEIN: scaffold attachment factor B1-like
[Equus caballus]
Length = 904
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 3/129 (2%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIV-NDRSTRGKCYGFVTFGNPRSAVDAINDMN 101
+V GL + ++ +F KYG VV K+V N RS +CYGFVT A I+ ++
Sbjct: 397 WVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTAEEATKCISHLH 456
Query: 102 GRTIDGRVVRVSEVA--TRGRKSNSGRDQFRHGHRHKGRDRDNNRHRDRYQDRYNDRSRE 159
+ G+++ V + G+K++ RD + DR N R+ DR +D +
Sbjct: 457 KTELHGKMISVEKAKNEPAGKKTSEKRDGEGKKEKSSNSDRSANLKREDKADRKDDAKKG 516
Query: 160 RTSSQDRDK 168
S ++ K
Sbjct: 517 EDGSGEKSK 525
>gi|376295896|ref|YP_005167126.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans ND132]
gi|323458457|gb|EGB14322.1| RNP-1 like RNA-binding protein [Desulfovibrio desulfuricans ND132]
Length = 88
Score = 57.8 bits (138), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
++YVG LP+SA ED VR F+ +G V +VK++ DR T R + +GFV + +A+DAI
Sbjct: 4 NIYVGNLPWSATEDEVRAAFEAHGQVSSVKLIEDRETGRPRGFGFVEMADDAAALDAIEA 63
Query: 100 MNGRTIDGRVVRVSEVATR 118
++G+ GR ++V+E R
Sbjct: 64 LDGKDFGGRNLKVNEAKPR 82
>gi|145531303|ref|XP_001451420.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419071|emb|CAK84023.1| unnamed protein product [Paramecium tetraurelia]
Length = 158
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 57/104 (54%), Gaps = 7/104 (6%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGK-CYGFVTFGNPRSAVDAINDM 100
+++G L Y +D + ++F +YG + +K+++ +G Y FV F A+DA N +
Sbjct: 8 LWIGNLAYKVQKDDLEELFKQYGQITEIKVLD----KGPHVYAFVEFEKVEKAIDAFNSL 63
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFR-HGHRHKGRDRDNN 143
GR + G+ +++ + R R +N RD+ R G K R RD+N
Sbjct: 64 QGRELKGQAMKIEYASGRKRTTND-RDKDRGRGGNDKYRKRDSN 106
>gi|41946787|gb|AAH65971.1| Zgc:55876 protein [Danio rerio]
Length = 220
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R +D +S+ V L Y + +++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVDGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAILDGRELRV-QMARYGRPPDS 98
>gi|124514052|ref|XP_001350382.1| U1 small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23615799|emb|CAD52791.1| U1 small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 423
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSA 93
+T D + ++++G L Y +E ++K F+ YG + VKI+ D++ + + Y F+ F + +S
Sbjct: 92 LTSDPKKTLFIGRLSYEVSEQKLKKEFESYGKIKTVKIIYDKNLKPRGYAFIEFEHTKSM 151
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGR 120
DA +G+ I+ R + V RGR
Sbjct: 152 NDAYKLADGKKIENRRILVD--IERGR 176
>gi|297840491|ref|XP_002888127.1| hypothetical protein ARALYDRAFT_315285 [Arabidopsis lyrata subsp.
lyrata]
gi|297333968|gb|EFH64386.1| hypothetical protein ARALYDRAFT_315285 [Arabidopsis lyrata subsp.
lyrata]
Length = 286
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAI 97
ES ++VGGL + E + FD+YG + +I+ + T R + +GF+TF + R A +AI
Sbjct: 11 ESRIFVGGLSWDVTERQLESTFDRYGKITECQIMVGKDTGRPRGFGFITFTDRRGADEAI 70
Query: 98 NDMNGRTIDGRVVRVSEVATR 118
M+GR + RV+ V++ +
Sbjct: 71 KHMHGRELGDRVISVNKAEPK 91
>gi|170041667|ref|XP_001848576.1| serine/arginine rich splicing factor [Culex quinquefasciatus]
gi|167865236|gb|EDS28619.1| serine/arginine rich splicing factor [Culex quinquefasciatus]
Length = 186
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ID S+ V L Y D +R+VF++ G V + I DR TR + + FV F +
Sbjct: 6 RPPPRIDGMVSLKVDNLTYRTTPDDLRRVFERCGEVGDIYIPRDRHTRESRGFAFVRFYD 65
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNSG 125
R A DA++ M+GR +DGR +RV ++A GR ++
Sbjct: 66 KRDAQDALDAMDGRMLDGRELRV-QMARYGRPTSPA 100
>gi|356496753|ref|XP_003517230.1| PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa-like [Glycine
max]
Length = 481
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 81/168 (48%), Gaps = 18/168 (10%)
Query: 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRS 92
++ D +++V L Y E +++ F+ YG + V++V D+ T + + Y F+ + + R
Sbjct: 135 VSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKDTNKPRGYAFIEYLHTRD 194
Query: 93 AVDAINDMNGRTIDGRVVRV------SEVATRGRKSNSGRDQFRHG-----HRHKGRDRD 141
A +GR IDGR V V + R R+ G R G RH GR++
Sbjct: 195 MKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQ 254
Query: 142 NNR------HRDRYQDRYNDRSRERTSSQDRDKGMGREYEHVRDHDRD 183
+R DR+ DR + SRER +D+++ RE+ + R DRD
Sbjct: 255 QSRSEEPRVREDRHSDRDREISRERVRDKDKERERSREHSNERVRDRD 302
>gi|330928415|ref|XP_003302251.1| hypothetical protein PTT_14000 [Pyrenophora teres f. teres 0-1]
gi|311322479|gb|EFQ89633.1| hypothetical protein PTT_14000 [Pyrenophora teres f. teres 0-1]
Length = 296
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGF--VTFGNPRSAVD 95
D + +Y+GGLP+ +E + +F +YG V +K+ DR T GK GF + + + RS
Sbjct: 31 DTAFIYIGGLPFELSEGDIITIFSQYGEPVWIKLARDRET-GKSRGFAWIKYEDQRSCDL 89
Query: 96 AINDMNGRTIDGRVVRV 112
A++++ G I R++RV
Sbjct: 90 AVDNLGGANIMDRIIRV 106
>gi|223647184|gb|ACN10350.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
gi|223673057|gb|ACN12710.1| Splicing factor, arginine/serine-rich 2 [Salmo salar]
Length = 212
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 31 RVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTR-GKCYGFVTFGN 89
R ++ +S+ V L Y + +++R+VF+KYG V V I DR T+ + + FV F +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPETLRRVFEKYGRVGDVYIPRDRYTKESRGFSFVRFHD 64
Query: 90 PRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSNS 124
R A DA++ M+G +DGR +RV ++A GR +S
Sbjct: 65 KRDAEDAMDAMDGAVLDGRELRV-QMARYGRPPDS 98
>gi|169767750|ref|XP_001818346.1| glycine-rich RNA-binding protein 2 [Aspergillus oryzae RIB40]
gi|83766201|dbj|BAE56344.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 127
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GGL + ++S+R F+KYG+V +V DR T R + +GFV F + A A +
Sbjct: 2 SKLFIGGLAWHTTDESLRSGFEKYGAVEEAIVVKDRDTGRSRGFGFVRFSSEADAEAAAH 61
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSG 125
+MN + DGR +RV + + R +++ G
Sbjct: 62 EMNNQEFDGRTIRVDKASERAPRNDGG 88
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,996,770,754
Number of Sequences: 23463169
Number of extensions: 266660935
Number of successful extensions: 1918945
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 11581
Number of HSP's successfully gapped in prelim test: 29678
Number of HSP's that attempted gapping in prelim test: 1456308
Number of HSP's gapped (non-prelim): 191499
length of query: 386
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 242
effective length of database: 8,980,499,031
effective search space: 2173280765502
effective search space used: 2173280765502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)