BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016629
(386 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 80.1 bits (196), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NE+S+ +VF KYG + V +V DR T R + +GFVTF NP A
Sbjct: 1 MSDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+ +DGR +RV +
Sbjct: 61 DAMMAMNGKAVDGRQIRVDQAG 82
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/87 (47%), Positives = 57/87 (65%), Gaps = 4/87 (4%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + E+S+ +VF KYG V V +V DR S R + +GFVTF NP A DA
Sbjct: 4 DEGKLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSN 123
+ MNG+++DGR +RV + G+ SN
Sbjct: 64 MMAMNGKSVDGRQIRVDQA---GKSSN 87
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE S+ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 1/78 (1%)
Query: 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAI 97
E +VGGL ++ N++ +++ F ++G V+ KI+NDR S R + +GFVTF + ++ DAI
Sbjct: 5 EYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAI 64
Query: 98 NDMNGRTIDGRVVRVSEV 115
+MNG+ +DGRV+ V+E
Sbjct: 65 EEMNGKELDGRVITVNEA 82
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + NE ++ +VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVA 116
+ MNG+++DGR +RV +
Sbjct: 64 MMAMNGKSVDGRQIRVDQAG 83
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
+ DE +++GGL + NED + + F KYG + V +V DR T R + +GFVTF N A
Sbjct: 1 MSDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAK 60
Query: 95 DAINDMNGRTIDGRVVRVSEVA 116
DA+ MNG+++DGR +RV +
Sbjct: 61 DAMMAMNGKSVDGRQIRVDQAG 82
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 54/87 (62%), Gaps = 4/87 (4%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
DE ++VGGL + +E + VF KYG + V +V DR T R + +GFVTF N A DA
Sbjct: 4 DEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSN 123
+ MNG+T+DGR +RV + G+ SN
Sbjct: 64 MAGMNGKTVDGRQIRVDQA---GKSSN 87
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ N++S+ + F ++G + KI+NDR T R + +GFVTF + +S DAI MN
Sbjct: 9 FVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMN 68
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 69 GQELDGRNITVNEA 82
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
Query: 43 YVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN 101
+VGGL ++ + + + F ++G V+ KI+NDR T R + +GFVTF + +S DAI++MN
Sbjct: 9 FVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMN 68
Query: 102 GRTIDGRVVRVSEV 115
G+ +DGR + V+E
Sbjct: 69 GKELDGRTITVNEA 82
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ +E S+ F ++G +V KI+NDR T R + +GFVTF + +S D
Sbjct: 5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
S +++GG+ YS +EDS+R+ F KYG VV +++ DR T R + +GFVTF + +A AI
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 99 DMNGRTIDGRVVRV 112
++GR + GRVV+V
Sbjct: 100 ALDGRDLHGRVVKV 113
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ N +++ + F +G V+ K++ DR T R + +GFVTF + +S +D
Sbjct: 5 DVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI +MNG+ +DGR + V++
Sbjct: 65 AIENMNGKELDGRNITVNQA 84
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ F +YG V+ KI+NDR T R + +GFVTF + +S D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ + +S+ F YG ++ K++ DR T R + +GFVTF + S +D
Sbjct: 5 DVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI +MNG+ +DGR + V++
Sbjct: 65 AIENMNGKELDGRNITVNQA 84
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ ++ F +YG V+ KI+NDR T R + +GFVTF + ++ D
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 96 AINDMNGRTIDGRVVRVSEV 115
AI MNG+ +DGR + V+E
Sbjct: 65 AIEGMNGQDLDGRSITVNEA 84
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95
D E +VGGL ++ ++ S++ F KYG V+ KI+ DR T R + +GFVTF + +
Sbjct: 3 DVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQ 62
Query: 96 AINDMNGRTIDGRVVRVSEVATR 118
AI MNG+ +DGR + V+E +R
Sbjct: 63 AIEAMNGQDLDGRNITVNEAQSR 85
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A DA
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDA 63
Query: 97 INDMNGRTIDGRVVRV 112
+ MNG ++DGR +RV
Sbjct: 64 MRAMNGESLDGRQIRV 79
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
D + V+VGG+PY E + VF +YG VV V +V D+ T + K + F+ + + RS + A
Sbjct: 34 DSAYVFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILA 93
Query: 97 INDMNGRTIDGRVVRVSEVA 116
++++NG + GR+VRV V+
Sbjct: 94 VDNLNGAKVLGRIVRVDHVS 113
>sp|B0BN49|RBMX2_RAT RNA-binding motif protein, X-linked 2 OS=Rattus norvegicus GN=Rbmx2
PE=2 SV=1
Length = 328
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTI----------DDESSVYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D + +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVAEKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS V A+++ NG I GR +RV VA
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVA 113
>sp|Q96E39|RMXL1_HUMAN RNA binding motif protein, X-linked-like-1 OS=Homo sapiens
GN=RBMXL1 PE=1 SV=1
Length = 390
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A D
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDV 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSG 125
+ MNG ++DGR +RV R + G
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGTRGG 92
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>sp|P0DJD3|RBY1A_HUMAN RNA-binding motif protein, Y chromosome, family 1 member A1 OS=Homo
sapiens GN=RBMY1A1 PE=1 SV=1
Length = 496
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>sp|P0DJD4|RBY1C_HUMAN RNA-binding motif protein, Y chromosome, family 1 member C OS=Homo
sapiens GN=RBMY1C PE=1 SV=1
Length = 496
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>sp|A6NEQ0|RBY1E_HUMAN RNA-binding motif protein, Y chromosome, family 1 member E OS=Homo
sapiens GN=RBMY1E PE=2 SV=1
Length = 496
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>sp|P0C7P1|RBY1D_HUMAN RNA-binding motif protein, Y chromosome, family 1 member D OS=Homo
sapiens GN=RBMY1D PE=2 SV=1
Length = 496
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>sp|A6NDE4|RBY1B_HUMAN RNA-binding motif protein, Y chromosome, family 1 member B OS=Homo
sapiens GN=RBMY1B PE=2 SV=2
Length = 496
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 49/80 (61%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG+++ G+ ++V +
Sbjct: 64 AAKDMNGKSLHGKAIKVEQA 83
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes GN=RBMX
PE=2 SV=1
Length = 391
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V V ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>sp|Q8R0F5|RBMX2_MOUSE RNA-binding motif protein, X-linked 2 OS=Mus musculus GN=Rbmx2 PE=1
SV=1
Length = 326
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + ++ S ++VGGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVAEKVSWHSEYKHSAWIFVGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS V A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIRVDHVS 113
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 65.5 bits (158), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V + ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
DA DMNG+++DG+ ++V E AT+
Sbjct: 64 DAARDMNGKSLDGKAIKV-EQATK 86
>sp|Q9Y388|RBMX2_HUMAN RNA-binding motif protein, X-linked 2 OS=Homo sapiens GN=RBMX2 PE=1
SV=2
Length = 322
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 11/109 (10%)
Query: 19 IKARVIFNLIEERVKMTIDDESS----------VYVGGLPYSANEDSVRKVFDKYGSVVA 68
K ++I L E V++ + D+ S +++GGLPY E + VF +YG +V
Sbjct: 5 TKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVN 64
Query: 69 VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116
+ +V D+ T + K + F+ + + RS + A+++ NG I GR +RV V+
Sbjct: 65 INLVRDKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVS 113
>sp|Q15415|RBY1F_HUMAN RNA-binding motif protein, Y chromosome, family 1 member F/J
OS=Homo sapiens GN=RBMY1F PE=2 SV=2
Length = 496
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 48/80 (60%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVD 95
D +++GGL NE ++ VF K+G + V ++ DR+++ + + F+TF NP A +
Sbjct: 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKN 63
Query: 96 AINDMNGRTIDGRVVRVSEV 115
A DMNG ++ G+ ++V +
Sbjct: 64 AAKDMNGTSLHGKAIKVEQA 83
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + GSVV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFG 88
ER T +YVG +P+ ++ + +VF ++G VV+ ++V DR S R + +GFVT
Sbjct: 181 ERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMS 240
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSN 123
+ +AI +++G+T+DGR +RV+ R R++
Sbjct: 241 SEAEMSEAIANLDGQTLDGRTIRVNAAEERPRRNT 275
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+++ ++VG LPY + + + ++F + G V +++ +R T R + +GFVT A A
Sbjct: 95 EDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKA 154
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
+ + ++GR++ V++ A RG + F+ +R
Sbjct: 155 VELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYR 192
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM 100
VYVG LP+ + + ++F ++G VV+ ++V+DR T R + +GFVT + DAI +
Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 210
Query: 101 NGRTIDGRVVRVSEVATRGRKS 122
+G+T+DGR VRV+ R R++
Sbjct: 211 DGQTLDGRAVRVNVAEERPRRA 232
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E+ ++VG LPY + + + +FD G V +++ +R T R + +GFVT A A
Sbjct: 53 EEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKA 112
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
+ +NG +DGR + V++ A RG + R F R
Sbjct: 113 VELLNGYDMDGRQLTVNKAAPRGSPERAPRGDFEPSCR 150
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDA 96
+E ++VGGL ++ +E ++ F +G + V +V DR T R + +GF+TF NP A A
Sbjct: 4 EEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVA 63
Query: 97 INDMNGRTIDGRVVRVSEVATRGRKS 122
+ MNG ++DGR +RV R +
Sbjct: 64 MRAMNGESLDGRQIRVDHAGKSARGT 89
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFG 88
ER T + +YVG +P+ ++ + ++F ++G VV+ ++V DR T R + +GFVT
Sbjct: 220 ERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMA 279
Query: 89 NPRSAVDAINDMNGRTIDGRVVRVSEVATRGRKSN 123
+ DAI +++G+++DGR +RV+ R R++
Sbjct: 280 SEAEMSDAIANLDGQSLDGRTIRVNVAEDRSRRNT 314
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98
+ ++VG LPY + + + ++F++ G V +++ +R T + + +GFVT A A+
Sbjct: 136 AKLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVE 195
Query: 99 DMNGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHR 134
N ++GR++ V++ A RG + F +R
Sbjct: 196 MYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYR 231
>sp|D4AE41|RMXL1_RAT RNA binding motif protein, X-linked-like-1 OS=Rattus norvegicus
GN=Rbmxl1 PE=3 SV=1
Length = 388
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Query: 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAV 94
D +++GGL NE ++ VF KYG +V + ++ DR T + + + FVTF +P A
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAK 63
Query: 95 DAINDMNGRTIDGRVVRVSEVATR 118
D DMNG+++DG+ ++V E AT+
Sbjct: 64 DVARDMNGKSLDGKAIKV-EQATK 86
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query: 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99
SV+VG +PY A E+ ++ +F + G VV+ ++V DR T + K YGF + + +A+ A+ +
Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76
Query: 100 MNGRTIDGRVVRVSEVAT 117
+NGR GR +RV A+
Sbjct: 77 LNGREFSGRALRVDNAAS 94
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSA 93
++D + VYVG L + ++ +++++F + G+VV K+V DR S R + +GFVT+ + +
Sbjct: 203 SVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEV 262
Query: 94 VDAINDMNGRTIDGRVVRVSEVATRGRK 121
DAI+ +NG +DGR +RVS R R+
Sbjct: 263 NDAIDSLNGIDLDGRSIRVSAAEERPRR 290
Score = 59.3 bits (142), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDM 100
++VG LP+S + ++ +F++ G+V V+++ D+ S R + +GFVT A
Sbjct: 90 LFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQF 149
Query: 101 NGRTIDGRVVRVSEVATRGRKSNSGRDQFRHGHRHKGRDRDNN 143
NG IDGR +RV+ ++ NS R G+ G RD N
Sbjct: 150 NGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGN 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 145,657,198
Number of Sequences: 539616
Number of extensions: 6559017
Number of successful extensions: 53786
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 856
Number of HSP's successfully gapped in prelim test: 1490
Number of HSP's that attempted gapping in prelim test: 34724
Number of HSP's gapped (non-prelim): 9102
length of query: 386
length of database: 191,569,459
effective HSP length: 119
effective length of query: 267
effective length of database: 127,355,155
effective search space: 34003826385
effective search space used: 34003826385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)