Query 016629
Match_columns 386
No_of_seqs 326 out of 2294
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 08:34:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0107 Alternative splicing f 99.8 8.8E-19 1.9E-23 151.4 15.7 80 37-120 8-87 (195)
2 KOG0113 U1 small nuclear ribon 99.8 2.3E-18 5E-23 159.8 18.3 93 29-121 91-184 (335)
3 PLN03134 glycine-rich RNA-bind 99.8 1.2E-17 2.5E-22 144.9 15.2 84 37-120 32-116 (144)
4 KOG4207 Predicted splicing fac 99.8 5.8E-17 1.2E-21 143.5 17.8 87 33-119 7-94 (256)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 5.3E-15 1.2E-19 146.0 13.2 82 38-119 268-350 (352)
6 PF00076 RRM_1: RNA recognitio 99.6 8.7E-15 1.9E-19 109.8 9.3 70 42-111 1-70 (70)
7 KOG0121 Nuclear cap-binding pr 99.6 7.1E-15 1.5E-19 121.1 7.5 85 36-120 33-118 (153)
8 KOG0105 Alternative splicing f 99.5 2.7E-14 5.9E-19 124.6 10.2 81 37-119 4-84 (241)
9 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.5 2.6E-14 5.7E-19 141.1 11.4 82 38-119 2-84 (352)
10 TIGR01659 sex-lethal sex-letha 99.5 3.3E-14 7.3E-19 140.0 10.7 84 35-118 103-187 (346)
11 TIGR01659 sex-lethal sex-letha 99.5 4.7E-13 1E-17 131.9 14.0 83 38-120 192-277 (346)
12 PF14259 RRM_6: RNA recognitio 99.5 3.1E-13 6.6E-18 102.1 9.6 70 42-111 1-70 (70)
13 KOG0130 RNA-binding protein RB 99.5 1.3E-13 2.8E-18 114.6 7.6 85 36-120 69-154 (170)
14 KOG0415 Predicted peptidyl pro 99.5 1E-13 2.2E-18 131.5 7.7 86 35-120 235-321 (479)
15 KOG0125 Ataxin 2-binding prote 99.5 2.2E-13 4.9E-18 128.3 9.8 82 36-118 93-174 (376)
16 KOG0149 Predicted RNA-binding 99.4 1.6E-13 3.4E-18 124.3 7.0 79 38-117 11-90 (247)
17 KOG0122 Translation initiation 99.4 3.7E-13 8E-18 122.3 9.4 83 36-118 186-269 (270)
18 PLN03120 nucleic acid binding 99.4 5.8E-13 1.3E-17 124.2 10.7 75 39-116 4-78 (260)
19 TIGR01645 half-pint poly-U bin 99.4 1.1E-12 2.4E-17 136.5 11.1 82 38-119 203-285 (612)
20 smart00362 RRM_2 RNA recogniti 99.4 2.2E-12 4.8E-17 95.7 9.6 72 41-113 1-72 (72)
21 KOG0126 Predicted RNA-binding 99.4 6.2E-14 1.3E-18 122.1 1.0 81 38-118 34-115 (219)
22 TIGR01622 SF-CC1 splicing fact 99.4 2.2E-12 4.8E-17 131.9 12.3 80 38-117 185-265 (457)
23 TIGR01645 half-pint poly-U bin 99.4 1.3E-12 2.7E-17 136.1 10.1 81 36-116 104-185 (612)
24 TIGR01648 hnRNP-R-Q heterogene 99.4 8.6E-12 1.9E-16 129.6 16.2 77 37-120 231-309 (578)
25 PLN03213 repressor of silencin 99.4 1.2E-12 2.7E-17 128.8 9.4 77 38-117 9-87 (759)
26 KOG0111 Cyclophilin-type pepti 99.4 4.2E-13 9.2E-18 120.1 5.1 88 36-123 7-95 (298)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.4 3.3E-12 7.2E-17 132.4 12.0 81 37-117 293-374 (509)
28 TIGR01628 PABP-1234 polyadenyl 99.4 3.7E-12 8E-17 133.8 11.6 79 40-118 1-80 (562)
29 KOG0148 Apoptosis-promoting RN 99.3 2E-12 4.4E-17 119.1 8.0 84 37-120 60-144 (321)
30 KOG0114 Predicted RNA-binding 99.3 4.1E-12 8.9E-17 101.2 8.5 83 34-118 13-95 (124)
31 PLN03121 nucleic acid binding 99.3 5.2E-12 1.1E-16 116.1 10.5 75 38-115 4-78 (243)
32 cd00590 RRM RRM (RNA recogniti 99.3 1.2E-11 2.7E-16 92.2 10.2 74 41-114 1-74 (74)
33 KOG0131 Splicing factor 3b, su 99.3 1.8E-12 3.8E-17 113.2 6.0 82 35-116 5-87 (203)
34 TIGR01628 PABP-1234 polyadenyl 99.3 5.9E-12 1.3E-16 132.3 11.0 83 36-118 282-364 (562)
35 KOG0145 RNA-binding protein EL 99.3 8.8E-12 1.9E-16 114.2 10.4 102 17-118 256-358 (360)
36 KOG0148 Apoptosis-promoting RN 99.3 9.2E-12 2E-16 114.8 10.3 89 28-121 153-241 (321)
37 smart00360 RRM RNA recognition 99.3 1.1E-11 2.4E-16 91.5 8.6 70 44-113 1-71 (71)
38 TIGR01622 SF-CC1 splicing fact 99.3 1.3E-11 2.8E-16 126.4 11.4 80 37-117 87-167 (457)
39 TIGR01648 hnRNP-R-Q heterogene 99.3 1E-11 2.2E-16 129.0 10.0 77 37-113 56-133 (578)
40 COG0724 RNA-binding proteins ( 99.3 1.6E-11 3.4E-16 114.3 10.1 79 39-117 115-194 (306)
41 KOG4661 Hsp27-ERE-TATA-binding 99.3 9.5E-10 2.1E-14 110.2 21.5 83 38-120 404-487 (940)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 3E-11 6.5E-16 124.7 10.9 78 37-118 273-351 (481)
43 KOG0127 Nucleolar protein fibr 99.2 2.5E-11 5.3E-16 121.1 8.9 83 38-120 116-198 (678)
44 KOG0117 Heterogeneous nuclear 99.2 4.5E-11 9.7E-16 116.9 9.3 79 37-115 81-161 (506)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 6.1E-11 1.3E-15 122.4 10.3 76 38-118 1-78 (481)
46 KOG0108 mRNA cleavage and poly 99.2 3.5E-11 7.6E-16 120.7 8.0 81 40-120 19-100 (435)
47 KOG0145 RNA-binding protein EL 99.2 6.3E-11 1.4E-15 108.6 8.9 84 36-119 38-122 (360)
48 KOG0146 RNA-binding protein ET 99.2 2.8E-11 6E-16 111.4 6.1 86 34-119 280-366 (371)
49 PF13893 RRM_5: RNA recognitio 99.2 1.2E-10 2.7E-15 84.1 8.1 56 56-115 1-56 (56)
50 KOG0124 Polypyrimidine tract-b 99.1 3.5E-11 7.6E-16 114.8 4.3 75 39-113 113-188 (544)
51 KOG0144 RNA-binding protein CU 99.1 5.3E-11 1.1E-15 115.9 5.5 84 37-120 122-208 (510)
52 KOG0116 RasGAP SH3 binding pro 99.1 8.6E-10 1.9E-14 110.2 13.1 80 38-118 287-367 (419)
53 KOG0109 RNA-binding protein LA 99.1 2E-10 4.4E-15 107.0 7.8 97 38-141 77-179 (346)
54 KOG0109 RNA-binding protein LA 99.1 1.5E-10 3.4E-15 107.7 7.0 72 40-118 3-74 (346)
55 KOG0147 Transcriptional coacti 99.1 2.1E-10 4.6E-15 114.9 6.8 79 41-119 280-359 (549)
56 smart00361 RRM_1 RNA recogniti 99.1 6.3E-10 1.4E-14 84.4 7.9 60 53-112 2-69 (70)
57 KOG0127 Nucleolar protein fibr 99.1 5.6E-10 1.2E-14 111.6 9.7 85 34-118 287-378 (678)
58 KOG0144 RNA-binding protein CU 99.0 4.8E-10 1E-14 109.3 7.1 84 37-120 32-119 (510)
59 KOG0117 Heterogeneous nuclear 99.0 5.5E-10 1.2E-14 109.4 7.1 79 35-120 255-333 (506)
60 TIGR01642 U2AF_lg U2 snRNP aux 99.0 2.6E-09 5.5E-14 110.8 10.5 73 36-114 172-256 (509)
61 KOG0131 Splicing factor 3b, su 98.9 1.5E-09 3.3E-14 95.0 6.1 87 35-121 92-180 (203)
62 KOG4212 RNA-binding protein hn 98.9 1.1E-08 2.4E-13 100.0 11.7 79 39-117 44-123 (608)
63 KOG0123 Polyadenylate-binding 98.9 4.2E-09 9.2E-14 104.7 8.5 80 39-120 76-155 (369)
64 KOG4206 Spliceosomal protein s 98.9 4.4E-09 9.5E-14 95.3 7.8 85 34-120 4-92 (221)
65 KOG0132 RNA polymerase II C-te 98.8 5.6E-09 1.2E-13 108.2 7.6 79 39-122 421-499 (894)
66 KOG0110 RNA-binding protein (R 98.8 1E-08 2.2E-13 105.7 8.9 78 39-116 515-596 (725)
67 KOG4208 Nucleolar RNA-binding 98.8 1.5E-08 3.3E-13 90.5 8.0 84 35-118 45-130 (214)
68 KOG0124 Polypyrimidine tract-b 98.8 1.4E-08 3E-13 97.3 8.3 81 37-117 208-289 (544)
69 KOG0153 Predicted RNA-binding 98.8 1.2E-08 2.6E-13 97.4 7.8 74 39-117 228-302 (377)
70 KOG0123 Polyadenylate-binding 98.8 1.8E-08 3.9E-13 100.2 8.1 76 40-120 2-77 (369)
71 KOG0106 Alternative splicing f 98.7 1.4E-08 3.1E-13 92.6 5.9 74 40-120 2-75 (216)
72 KOG4205 RNA-binding protein mu 98.7 2E-08 4.3E-13 97.0 6.0 82 38-120 5-87 (311)
73 KOG0146 RNA-binding protein ET 98.7 3.1E-08 6.8E-13 91.5 5.8 83 38-120 18-103 (371)
74 KOG1548 Transcription elongati 98.6 1.2E-07 2.6E-12 90.6 8.5 84 36-119 131-222 (382)
75 KOG4209 Splicing factor RNPS1, 98.6 2.2E-07 4.7E-12 86.6 9.6 82 36-118 98-180 (231)
76 KOG0533 RRM motif-containing p 98.6 1.6E-07 3.5E-12 87.5 8.1 84 36-119 80-163 (243)
77 KOG4454 RNA binding protein (R 98.6 2.7E-08 5.8E-13 89.6 2.4 80 36-116 6-85 (267)
78 KOG0110 RNA-binding protein (R 98.6 4.7E-08 1E-12 100.8 4.4 80 39-118 613-693 (725)
79 KOG4205 RNA-binding protein mu 98.5 1.7E-07 3.7E-12 90.6 6.7 81 39-120 97-178 (311)
80 KOG4212 RNA-binding protein hn 98.5 1.9E-07 4.1E-12 91.5 6.7 80 32-115 529-608 (608)
81 KOG2202 U2 snRNP splicing fact 98.5 2.1E-07 4.5E-12 85.9 6.6 113 2-116 26-146 (260)
82 KOG1457 RNA binding protein (c 98.5 6E-07 1.3E-11 81.2 9.3 84 38-121 33-121 (284)
83 KOG0151 Predicted splicing reg 98.4 4.9E-07 1.1E-11 93.3 7.8 81 37-117 172-256 (877)
84 KOG4676 Splicing factor, argin 98.4 8.9E-08 1.9E-12 92.6 1.4 73 40-116 152-224 (479)
85 KOG4660 Protein Mei2, essentia 98.3 3.2E-07 6.9E-12 92.6 3.9 72 36-111 72-143 (549)
86 KOG1190 Polypyrimidine tract-b 98.2 1.2E-05 2.6E-10 78.6 10.1 76 39-118 297-373 (492)
87 KOG0106 Alternative splicing f 98.1 3.8E-06 8.3E-11 76.8 5.9 70 36-112 96-165 (216)
88 KOG0226 RNA-binding proteins [ 98.1 2.4E-06 5.2E-11 78.8 4.3 78 38-115 189-267 (290)
89 KOG1995 Conserved Zn-finger pr 98.1 1.1E-05 2.3E-10 77.9 8.4 85 36-120 63-156 (351)
90 PF04059 RRM_2: RNA recognitio 98.0 3.7E-05 7.9E-10 61.9 8.9 79 40-118 2-87 (97)
91 KOG4676 Splicing factor, argin 98.0 1.6E-05 3.5E-10 77.3 7.4 74 39-113 7-84 (479)
92 KOG0120 Splicing factor U2AF, 98.0 7.7E-06 1.7E-10 83.3 5.4 85 36-120 286-371 (500)
93 PF11608 Limkain-b1: Limkain b 98.0 2.8E-05 6E-10 60.2 6.6 69 40-117 3-76 (90)
94 KOG4210 Nuclear localization s 97.8 2.5E-05 5.5E-10 75.1 5.0 84 36-120 181-266 (285)
95 KOG4211 Splicing factor hnRNP- 97.8 8.9E-05 1.9E-09 74.3 8.2 77 36-115 7-83 (510)
96 KOG2314 Translation initiation 97.7 0.00016 3.5E-09 73.4 9.4 91 23-113 42-139 (698)
97 KOG1457 RNA binding protein (c 97.6 4.8E-05 1E-09 69.1 4.1 66 38-106 209-274 (284)
98 KOG4206 Spliceosomal protein s 97.6 0.00017 3.8E-09 65.7 7.5 77 36-116 143-220 (221)
99 KOG0105 Alternative splicing f 97.6 0.0006 1.3E-08 60.4 10.5 63 38-106 114-176 (241)
100 KOG0147 Transcriptional coacti 97.6 2.3E-05 5.1E-10 79.3 1.8 79 38-117 178-257 (549)
101 PF08777 RRM_3: RNA binding mo 97.6 9.8E-05 2.1E-09 60.5 4.9 70 40-114 2-76 (105)
102 KOG0120 Splicing factor U2AF, 97.6 0.00014 2.9E-09 74.4 6.7 63 55-117 425-491 (500)
103 COG5175 MOT2 Transcriptional r 97.5 0.00017 3.6E-09 69.2 6.4 80 38-117 113-202 (480)
104 KOG4211 Splicing factor hnRNP- 97.4 0.00045 9.8E-09 69.3 7.6 78 37-115 101-179 (510)
105 KOG0112 Large RNA-binding prot 97.3 0.00032 7E-09 74.8 5.4 81 35-120 451-533 (975)
106 PF14605 Nup35_RRM_2: Nup53/35 97.3 0.00061 1.3E-08 48.6 5.2 52 40-97 2-53 (53)
107 KOG0129 Predicted RNA-binding 97.2 0.001 2.2E-08 67.3 7.3 68 32-99 363-432 (520)
108 PF05172 Nup35_RRM: Nup53/35/4 97.1 0.0028 6E-08 51.4 7.6 76 39-116 6-90 (100)
109 KOG3152 TBP-binding protein, a 97.0 0.00034 7.3E-09 64.9 2.2 72 38-109 73-157 (278)
110 KOG1548 Transcription elongati 96.9 0.0028 6E-08 61.2 7.6 77 37-116 263-350 (382)
111 KOG1456 Heterogeneous nuclear 96.9 0.022 4.8E-07 55.6 13.6 79 38-120 119-201 (494)
112 KOG2416 Acinus (induces apopto 96.9 0.001 2.2E-08 68.2 4.5 78 35-117 440-521 (718)
113 KOG0129 Predicted RNA-binding 96.9 0.0026 5.7E-08 64.4 7.3 63 37-100 257-326 (520)
114 PF08952 DUF1866: Domain of un 96.8 0.0047 1E-07 53.2 7.4 74 36-117 24-106 (146)
115 KOG1456 Heterogeneous nuclear 96.8 0.0089 1.9E-07 58.3 9.9 81 34-118 282-363 (494)
116 KOG4307 RNA binding protein RB 96.8 0.0074 1.6E-07 63.1 9.6 76 39-114 867-943 (944)
117 KOG1855 Predicted RNA-binding 96.7 0.0017 3.7E-08 64.2 4.2 67 37-103 229-309 (484)
118 KOG4849 mRNA cleavage factor I 96.6 0.0013 2.8E-08 63.4 2.9 75 38-112 79-156 (498)
119 KOG1190 Polypyrimidine tract-b 96.6 0.005 1.1E-07 60.7 6.7 79 36-117 411-490 (492)
120 KOG1996 mRNA splicing factor [ 96.5 0.0072 1.6E-07 57.2 7.0 62 54-115 301-364 (378)
121 KOG1365 RNA-binding protein Fu 96.5 0.0034 7.4E-08 61.4 4.9 77 39-115 280-359 (508)
122 KOG4307 RNA binding protein RB 96.2 0.0066 1.4E-07 63.4 5.0 82 34-115 429-511 (944)
123 KOG0128 RNA-binding protein SA 96.0 0.0049 1.1E-07 65.8 3.5 79 39-117 736-814 (881)
124 KOG2253 U1 snRNP complex, subu 95.9 0.0058 1.3E-07 63.6 3.2 77 30-114 31-107 (668)
125 KOG1365 RNA-binding protein Fu 95.5 0.041 9E-07 54.0 7.1 69 41-110 163-235 (508)
126 KOG0115 RNA-binding protein p5 95.4 0.017 3.8E-07 53.8 3.9 62 40-101 32-93 (275)
127 PF08675 RNA_bind: RNA binding 95.2 0.093 2E-06 40.9 6.9 55 39-101 9-63 (87)
128 KOG2193 IGF-II mRNA-binding pr 95.1 0.018 4E-07 57.0 3.5 72 40-118 2-76 (584)
129 KOG0128 RNA-binding protein SA 95.1 0.0016 3.5E-08 69.3 -4.1 74 39-112 667-741 (881)
130 KOG4285 Mitotic phosphoprotein 95.1 0.094 2E-06 50.1 8.0 69 39-114 197-266 (350)
131 KOG2068 MOT2 transcription fac 95.1 0.0067 1.4E-07 58.6 0.3 79 39-117 77-162 (327)
132 PF13851 GAS: Growth-arrest sp 94.9 0.36 7.8E-06 44.2 11.2 79 284-362 27-105 (201)
133 PF10309 DUF2414: Protein of u 94.6 0.17 3.7E-06 37.3 6.5 55 39-100 5-62 (62)
134 KOG0112 Large RNA-binding prot 94.5 0.0087 1.9E-07 64.2 -0.5 76 38-113 371-446 (975)
135 PF12718 Tropomyosin_1: Tropom 94.3 1 2.2E-05 39.0 12.0 81 281-361 11-91 (143)
136 PF03880 DbpA: DbpA RNA bindin 94.1 0.24 5.1E-06 37.7 6.8 66 41-115 2-74 (74)
137 PRK11634 ATP-dependent RNA hel 93.6 1.2 2.6E-05 47.9 13.5 67 41-116 488-561 (629)
138 KOG2135 Proteins containing th 93.4 0.049 1.1E-06 54.8 2.4 74 39-118 372-446 (526)
139 PF15023 DUF4523: Protein of u 93.3 0.37 8.1E-06 41.3 7.2 73 36-115 83-159 (166)
140 PF03467 Smg4_UPF3: Smg-4/UPF3 92.0 0.26 5.5E-06 44.2 4.8 80 38-117 6-97 (176)
141 PF04847 Calcipressin: Calcipr 91.9 0.55 1.2E-05 42.4 6.9 62 52-118 8-71 (184)
142 PRK11637 AmiB activator; Provi 91.4 3.2 7E-05 42.4 12.8 35 307-341 84-118 (428)
143 PF11559 ADIP: Afadin- and alp 91.3 6.6 0.00014 33.9 13.0 82 280-361 48-129 (151)
144 PF10805 DUF2730: Protein of u 91.2 1.7 3.6E-05 35.6 8.5 68 298-368 35-104 (106)
145 KOG2888 Putative RNA binding p 90.9 0.21 4.6E-06 48.2 3.3 9 80-88 160-168 (453)
146 KOG2318 Uncharacterized conser 90.8 0.88 1.9E-05 47.2 7.8 82 34-115 169-305 (650)
147 PRK10884 SH3 domain-containing 90.7 3.7 8.1E-05 37.7 11.2 70 288-360 97-166 (206)
148 PF05266 DUF724: Protein of un 89.4 7.9 0.00017 35.1 12.0 73 288-363 114-186 (190)
149 PF07576 BRAP2: BRCA1-associat 89.2 3.4 7.4E-05 34.1 8.7 66 41-107 15-81 (110)
150 KOG4574 RNA-binding protein (c 88.6 0.43 9.4E-06 51.4 3.7 74 41-119 300-375 (1007)
151 PF04111 APG6: Autophagy prote 88.6 7.9 0.00017 37.9 12.4 48 298-345 64-111 (314)
152 PF11932 DUF3450: Protein of u 88.5 10 0.00022 35.7 12.8 71 298-368 42-112 (251)
153 KOG0670 U4/U6-associated splic 88.2 1.6 3.6E-05 45.3 7.4 21 305-325 285-305 (752)
154 KOG0995 Centromere-associated 86.8 12 0.00026 39.1 12.7 56 288-343 443-502 (581)
155 PF08614 ATG16: Autophagy prot 86.7 7.5 0.00016 35.2 10.3 77 288-367 106-182 (194)
156 PF05667 DUF812: Protein of un 86.5 6.4 0.00014 42.0 11.0 82 281-366 325-406 (594)
157 KOG4210 Nuclear localization s 86.3 0.33 7.2E-06 46.9 1.2 81 38-118 87-168 (285)
158 COG3524 KpsE Capsule polysacch 86.2 4.2 9.1E-05 39.3 8.5 66 299-364 194-272 (372)
159 PF04102 SlyX: SlyX; InterPro 85.4 4.9 0.00011 30.1 7.0 49 305-356 4-52 (69)
160 KOG2591 c-Mpl binding protein, 85.3 1.3 2.9E-05 45.7 5.0 68 38-111 174-245 (684)
161 PRK04325 hypothetical protein; 85.2 6.8 0.00015 29.9 7.8 49 305-356 9-57 (74)
162 PRK00846 hypothetical protein; 85.1 9.8 0.00021 29.3 8.5 51 303-356 11-61 (77)
163 PF10158 LOH1CR12: Tumour supp 85.1 6.9 0.00015 33.3 8.5 57 310-366 54-110 (131)
164 PF11932 DUF3450: Protein of u 85.0 22 0.00048 33.5 13.0 92 280-371 31-126 (251)
165 PF04111 APG6: Autophagy prote 85.0 22 0.00048 34.8 13.3 77 283-362 56-132 (314)
166 KOG2888 Putative RNA binding p 84.9 0.5 1.1E-05 45.8 1.7 14 50-63 168-181 (453)
167 PF00261 Tropomyosin: Tropomyo 84.3 26 0.00057 32.7 13.1 67 297-366 168-234 (237)
168 KOG1962 B-cell receptor-associ 84.2 8.7 0.00019 35.5 9.3 48 306-353 159-206 (216)
169 PRK00736 hypothetical protein; 83.9 7.8 0.00017 29.0 7.4 49 305-356 5-53 (68)
170 PRK00295 hypothetical protein; 83.7 8.6 0.00019 28.8 7.6 49 305-356 5-53 (68)
171 PRK04406 hypothetical protein; 83.7 9.6 0.00021 29.1 8.0 49 304-355 10-58 (75)
172 KOG4001 Axonemal dynein light 83.5 11 0.00025 34.2 9.5 67 295-367 189-255 (259)
173 KOG4660 Protein Mei2, essentia 83.3 1.8 3.9E-05 44.8 5.0 57 63-119 413-474 (549)
174 PF09738 DUF2051: Double stran 82.6 17 0.00036 35.5 11.1 70 310-380 110-179 (302)
175 PF10186 Atg14: UV radiation r 81.6 35 0.00076 32.4 13.2 58 286-343 72-129 (302)
176 PRK02119 hypothetical protein; 81.5 13 0.00028 28.3 7.9 48 305-355 9-56 (73)
177 PRK10884 SH3 domain-containing 81.3 14 0.0003 34.0 9.6 49 305-353 118-166 (206)
178 PF10779 XhlA: Haemolysin XhlA 81.2 11 0.00023 28.4 7.5 64 296-372 4-67 (71)
179 PF08317 Spc7: Spc7 kinetochor 81.1 21 0.00045 35.1 11.5 62 287-348 212-273 (325)
180 COG4942 Membrane-bound metallo 80.5 25 0.00055 35.7 11.8 60 286-345 40-99 (420)
181 PRK02793 phi X174 lysis protei 79.9 15 0.00033 27.8 7.8 48 305-355 8-55 (72)
182 KOG0804 Cytoplasmic Zn-finger 79.7 16 0.00034 37.2 9.9 68 39-107 74-142 (493)
183 PF12329 TMF_DNA_bd: TATA elem 79.5 25 0.00054 26.7 9.0 61 298-361 5-65 (74)
184 KOG4360 Uncharacterized coiled 79.5 22 0.00047 36.8 10.9 53 283-335 204-256 (596)
185 PRK04406 hypothetical protein; 79.1 19 0.00042 27.5 8.2 48 296-343 9-56 (75)
186 PRK02119 hypothetical protein; 78.9 16 0.00036 27.7 7.8 53 293-345 4-56 (73)
187 PF08232 Striatin: Striatin fa 78.8 18 0.00039 30.8 8.9 56 291-346 11-66 (134)
188 PF03961 DUF342: Protein of un 78.2 17 0.00036 37.5 10.2 76 289-365 332-407 (451)
189 PF09726 Macoilin: Transmembra 78.2 20 0.00042 39.2 11.0 34 334-367 588-624 (697)
190 PF09304 Cortex-I_coil: Cortex 77.4 30 0.00066 28.2 9.2 40 284-323 37-76 (107)
191 PF07061 Swi5: Swi5; InterPro 76.8 18 0.00039 28.2 7.6 57 305-363 7-63 (83)
192 KOG0995 Centromere-associated 76.0 44 0.00095 35.2 12.2 88 284-372 460-557 (581)
193 smart00787 Spc7 Spc7 kinetocho 75.6 14 0.00029 36.3 8.2 63 287-349 207-269 (312)
194 PF11767 SET_assoc: Histone ly 75.3 21 0.00046 26.6 7.3 55 50-112 11-65 (66)
195 TIGR03185 DNA_S_dndD DNA sulfu 75.2 62 0.0013 34.9 14.0 16 358-373 506-521 (650)
196 PF06005 DUF904: Protein of un 75.2 34 0.00073 26.0 9.3 28 340-367 39-66 (72)
197 PF04156 IncA: IncA protein; 75.1 61 0.0013 28.9 12.6 12 288-299 92-103 (191)
198 PF11559 ADIP: Afadin- and alp 75.0 53 0.0012 28.2 12.1 48 296-343 57-104 (151)
199 PF10146 zf-C4H2: Zinc finger- 74.3 73 0.0016 29.8 12.3 55 301-355 46-103 (230)
200 KOG0835 Cyclin L [General func 73.9 9.8 0.00021 37.2 6.5 8 51-58 213-220 (367)
201 COG1579 Zn-ribbon protein, pos 73.8 68 0.0015 30.2 11.9 10 288-297 56-65 (239)
202 COG4985 ABC-type phosphate tra 73.4 29 0.00063 32.3 9.1 71 276-346 163-241 (289)
203 PRK02793 phi X174 lysis protei 73.3 26 0.00057 26.4 7.6 50 296-345 6-55 (72)
204 PF10224 DUF2205: Predicted co 73.1 19 0.00041 27.9 6.8 39 330-368 27-65 (80)
205 PF08614 ATG16: Autophagy prot 73.0 42 0.00091 30.3 10.3 59 287-352 119-177 (194)
206 KOG0612 Rho-associated, coiled 72.9 49 0.0011 37.9 12.3 58 306-363 495-552 (1317)
207 KOG0976 Rho/Rac1-interacting s 72.9 29 0.00064 37.9 10.2 83 284-369 85-167 (1265)
208 PRK13729 conjugal transfer pil 72.5 17 0.00036 37.5 8.2 51 299-349 70-120 (475)
209 PF07106 TBPIP: Tat binding pr 72.5 21 0.00046 31.4 8.0 60 288-347 76-137 (169)
210 PF06785 UPF0242: Uncharacteri 72.3 47 0.001 32.6 10.6 59 296-354 90-148 (401)
211 COG2900 SlyX Uncharacterized p 72.1 31 0.00066 26.1 7.4 38 318-358 21-58 (72)
212 KOG4010 Coiled-coil protein TP 72.0 29 0.00064 31.1 8.5 55 302-356 48-111 (208)
213 KOG1853 LIS1-interacting prote 71.7 39 0.00084 31.9 9.6 61 299-359 53-117 (333)
214 COG0497 RecN ATPase involved i 71.5 28 0.00061 36.8 9.7 45 299-343 336-381 (557)
215 PF14282 FlxA: FlxA-like prote 71.4 36 0.00078 27.7 8.5 21 301-321 47-67 (106)
216 PRK04778 septation ring format 70.8 41 0.0009 35.7 11.1 80 284-363 282-368 (569)
217 KOG0709 CREB/ATF family transc 70.8 8.1 0.00018 39.4 5.4 75 293-380 274-348 (472)
218 KOG0113 U1 small nuclear ribon 70.7 23 0.00049 34.3 8.1 13 52-64 152-164 (335)
219 KOG0107 Alternative splicing f 70.3 22 0.00048 31.8 7.3 7 40-46 38-44 (195)
220 COG2900 SlyX Uncharacterized p 70.3 41 0.00088 25.5 7.7 52 297-348 7-58 (72)
221 PRK03918 chromosome segregatio 69.7 68 0.0015 35.7 13.1 10 36-45 21-30 (880)
222 COG5185 HEC1 Protein involved 69.3 38 0.00083 34.8 9.7 85 278-362 466-563 (622)
223 KOG0151 Predicted splicing reg 69.2 6.1 0.00013 42.3 4.3 12 83-94 695-706 (877)
224 COG1579 Zn-ribbon protein, pos 69.2 88 0.0019 29.5 11.6 35 292-326 39-73 (239)
225 PF09738 DUF2051: Double stran 68.9 41 0.00089 32.8 9.7 58 288-345 109-166 (302)
226 PF12718 Tropomyosin_1: Tropom 68.9 68 0.0015 27.6 10.2 13 331-343 78-90 (143)
227 PF07888 CALCOCO1: Calcium bin 68.7 93 0.002 32.9 12.7 16 300-315 180-195 (546)
228 COG3883 Uncharacterized protei 68.6 36 0.00077 32.5 8.9 35 298-332 66-100 (265)
229 PF10481 CENP-F_N: Cenp-F N-te 68.5 57 0.0012 31.2 10.1 34 307-340 76-109 (307)
230 KOG1962 B-cell receptor-associ 68.3 48 0.001 30.7 9.4 61 306-366 152-212 (216)
231 PF14282 FlxA: FlxA-like prote 68.3 32 0.0007 28.0 7.6 47 305-351 26-76 (106)
232 PF07888 CALCOCO1: Calcium bin 68.3 48 0.0011 34.9 10.6 34 329-362 199-232 (546)
233 PF10186 Atg14: UV radiation r 68.2 1.1E+02 0.0023 29.1 12.6 28 298-325 77-104 (302)
234 KOG4673 Transcription factor T 68.1 59 0.0013 35.1 11.1 56 300-355 490-545 (961)
235 PF10168 Nup88: Nuclear pore c 68.1 40 0.00087 36.9 10.5 62 284-345 558-623 (717)
236 PF10174 Cast: RIM-binding pro 68.0 77 0.0017 35.0 12.5 79 287-365 318-400 (775)
237 KOG0996 Structural maintenance 67.0 84 0.0018 36.0 12.5 81 287-368 809-899 (1293)
238 PF08946 Osmo_CC: Osmosensory 66.6 15 0.00032 25.2 4.2 33 288-320 9-41 (46)
239 PF10211 Ax_dynein_light: Axon 66.6 1E+02 0.0022 27.9 11.6 24 305-328 134-157 (189)
240 smart00338 BRLZ basic region l 66.4 30 0.00065 25.2 6.5 23 302-324 23-45 (65)
241 PRK00295 hypothetical protein; 66.3 51 0.0011 24.6 7.7 39 306-344 13-51 (68)
242 KOG0250 DNA repair protein RAD 65.5 88 0.0019 35.5 12.4 70 278-347 338-422 (1074)
243 KOG4348 Adaptor protein CMS/SE 65.0 26 0.00056 35.6 7.5 55 286-343 571-625 (627)
244 PF06005 DUF904: Protein of un 64.9 44 0.00095 25.3 7.2 30 288-317 8-37 (72)
245 PF07106 TBPIP: Tat binding pr 64.7 52 0.0011 28.9 8.9 54 292-345 73-128 (169)
246 KOG3759 Uncharacterized RUN do 64.7 79 0.0017 32.5 10.8 72 278-349 143-250 (621)
247 PHA02562 46 endonuclease subun 64.4 86 0.0019 32.8 12.0 7 39-45 28-34 (562)
248 PF09726 Macoilin: Transmembra 64.1 1.4E+02 0.003 32.8 13.5 60 284-343 439-512 (697)
249 PF14932 HAUS-augmin3: HAUS au 64.0 75 0.0016 30.1 10.4 28 349-376 130-157 (256)
250 PF15619 Lebercilin: Ciliary p 64.0 83 0.0018 28.6 10.2 57 307-363 120-177 (194)
251 PF04102 SlyX: SlyX; InterPro 64.0 43 0.00093 25.0 7.0 32 288-319 8-39 (69)
252 KOG4207 Predicted splicing fac 63.9 55 0.0012 30.1 8.7 22 85-106 63-86 (256)
253 PF12777 MT: Microtubule-bindi 63.7 95 0.0021 30.7 11.5 72 289-360 13-85 (344)
254 PRK04325 hypothetical protein; 63.5 58 0.0013 24.7 7.7 46 298-343 9-54 (74)
255 KOG3650 Predicted coiled-coil 63.0 30 0.00065 27.7 6.1 41 328-368 65-105 (120)
256 cd07599 BAR_Rvs167p The Bin/Am 62.8 84 0.0018 28.7 10.2 59 288-346 104-162 (216)
257 KOG0243 Kinesin-like protein [ 62.7 76 0.0016 36.0 11.2 30 307-336 443-472 (1041)
258 PF05377 FlaC_arch: Flagella a 62.5 55 0.0012 23.5 7.0 11 333-343 38-48 (55)
259 KOG0250 DNA repair protein RAD 62.0 1.2E+02 0.0025 34.6 12.5 66 287-352 375-441 (1074)
260 KOG4019 Calcineurin-mediated s 62.0 5.8 0.00012 35.5 2.2 78 37-119 8-91 (193)
261 PF12001 DUF3496: Domain of un 61.4 47 0.001 27.4 7.2 31 305-335 7-39 (111)
262 PF00170 bZIP_1: bZIP transcri 61.2 49 0.0011 24.0 6.8 19 305-323 26-44 (64)
263 KOG0161 Myosin class II heavy 61.0 97 0.0021 37.8 12.4 65 289-353 1018-1089(1930)
264 PF04201 TPD52: Tumour protein 60.9 59 0.0013 28.7 8.2 47 306-352 37-92 (162)
265 TIGR03185 DNA_S_dndD DNA sulfu 60.9 48 0.0011 35.8 9.5 29 345-373 271-299 (650)
266 PF15233 SYCE1: Synaptonemal c 60.4 79 0.0017 26.8 8.4 52 304-355 12-63 (134)
267 PF08317 Spc7: Spc7 kinetochor 60.2 1.8E+02 0.0038 28.6 12.9 37 308-344 212-248 (325)
268 PF07111 HCR: Alpha helical co 60.0 1.2E+02 0.0026 32.9 11.7 79 288-369 335-413 (739)
269 PTZ00464 SNF-7-like protein; P 59.9 1E+02 0.0022 28.4 10.1 9 337-345 79-87 (211)
270 KOG3335 Predicted coiled-coil 59.9 14 0.0003 32.9 4.1 40 300-339 101-140 (181)
271 PRK04863 mukB cell division pr 59.6 1E+02 0.0022 36.8 12.2 10 80-89 85-94 (1486)
272 PF10211 Ax_dynein_light: Axon 59.3 1.2E+02 0.0025 27.4 10.3 34 309-342 124-157 (189)
273 smart00787 Spc7 Spc7 kinetocho 59.3 1.8E+02 0.004 28.4 12.8 41 306-346 205-245 (312)
274 KOG4454 RNA binding protein (R 59.3 2.2 4.7E-05 39.3 -0.9 77 35-111 76-156 (267)
275 COG5638 Uncharacterized conser 59.2 30 0.00065 34.8 6.7 42 32-73 139-185 (622)
276 TIGR03495 phage_LysB phage lys 59.0 1.2E+02 0.0025 26.1 10.2 29 300-328 28-56 (135)
277 PRK15365 type III secretion sy 58.9 86 0.0019 25.2 8.0 63 285-354 10-76 (107)
278 PF12592 DUF3763: Protein of u 58.5 60 0.0013 23.4 6.6 46 308-356 3-55 (57)
279 PF12325 TMF_TATA_bd: TATA ele 58.5 1.1E+02 0.0024 25.6 12.5 85 286-370 25-119 (120)
280 KOG0804 Cytoplasmic Zn-finger 58.3 2.1E+02 0.0045 29.5 12.5 61 292-352 348-408 (493)
281 PRK11448 hsdR type I restricti 58.1 66 0.0014 37.2 10.3 14 355-368 232-245 (1123)
282 KOG4643 Uncharacterized coiled 58.0 1.6E+02 0.0034 33.4 12.4 87 281-367 499-588 (1195)
283 PRK03963 V-type ATP synthase s 58.0 1.4E+02 0.003 26.7 12.9 22 359-380 106-127 (198)
284 PRK14067 exodeoxyribonuclease 57.9 58 0.0013 25.2 6.9 33 336-368 35-67 (80)
285 KOG0979 Structural maintenance 57.7 1.4E+02 0.003 33.8 12.0 88 283-370 261-348 (1072)
286 PF15294 Leu_zip: Leucine zipp 57.7 1.7E+02 0.0038 28.1 11.4 46 278-326 129-174 (278)
287 PRK14064 exodeoxyribonuclease 57.5 65 0.0014 24.6 7.0 30 336-365 34-63 (75)
288 PF05384 DegS: Sensor protein 57.5 1.4E+02 0.0029 26.4 11.6 60 287-346 87-146 (159)
289 PF05278 PEARLI-4: Arabidopsis 57.4 1.7E+02 0.0037 28.1 11.2 6 347-352 232-237 (269)
290 PF09602 PhaP_Bmeg: Polyhydrox 56.8 1.4E+02 0.0031 26.4 11.3 61 305-368 48-110 (165)
291 PF03962 Mnd1: Mnd1 family; I 56.8 1.5E+02 0.0033 26.7 11.9 28 343-370 138-165 (188)
292 COG4026 Uncharacterized protei 56.6 1.4E+02 0.003 27.8 10.1 23 300-322 158-180 (290)
293 TIGR00606 rad50 rad50. This fa 56.4 32 0.00069 40.4 7.6 65 299-363 585-652 (1311)
294 COG4942 Membrane-bound metallo 56.3 2E+02 0.0044 29.4 12.2 13 331-343 208-220 (420)
295 KOG3647 Predicted coiled-coil 56.2 1E+02 0.0022 29.5 9.3 23 350-375 168-190 (338)
296 PF12777 MT: Microtubule-bindi 56.1 57 0.0012 32.3 8.4 13 354-366 302-314 (344)
297 KOG2193 IGF-II mRNA-binding pr 55.3 1 2.2E-05 45.1 -4.0 77 39-117 80-156 (584)
298 PF09730 BicD: Microtubule-ass 55.2 1.1E+02 0.0024 33.5 10.8 82 288-369 370-459 (717)
299 PRK14160 heat shock protein Gr 55.1 84 0.0018 29.0 8.6 68 288-355 58-130 (211)
300 PRK02224 chromosome segregatio 55.1 1.9E+02 0.0042 32.2 13.3 10 36-45 21-30 (880)
301 PF15070 GOLGA2L5: Putative go 54.5 54 0.0012 35.2 8.3 48 302-349 119-183 (617)
302 TIGR02169 SMC_prok_A chromosom 54.3 1.7E+02 0.0036 33.6 12.9 10 36-45 21-30 (1164)
303 PF15254 CCDC14: Coiled-coil d 54.3 1.7E+02 0.0038 32.1 11.8 68 295-362 452-527 (861)
304 KOG0240 Kinesin (SMY1 subfamil 54.1 1.6E+02 0.0035 31.1 11.3 43 298-340 435-477 (607)
305 PRK14068 exodeoxyribonuclease 54.1 74 0.0016 24.4 6.8 31 335-365 33-63 (76)
306 PF15035 Rootletin: Ciliary ro 54.1 1.2E+02 0.0026 27.3 9.3 50 299-348 68-117 (182)
307 TIGR00606 rad50 rad50. This fa 54.0 1.7E+02 0.0038 34.4 13.1 70 284-353 210-279 (1311)
308 PF10234 Cluap1: Clusterin-ass 54.0 1.8E+02 0.0038 27.9 10.9 72 288-365 166-240 (267)
309 PF14988 DUF4515: Domain of un 54.0 1.3E+02 0.0027 27.7 9.7 51 305-362 40-90 (206)
310 KOG4246 Predicted DNA-binding 53.9 7.3 0.00016 42.4 1.7 29 284-312 462-492 (1194)
311 COG3883 Uncharacterized protei 53.9 2.1E+02 0.0045 27.4 12.5 53 294-346 165-217 (265)
312 PRK09039 hypothetical protein; 53.8 1.6E+02 0.0036 29.1 11.2 53 292-344 131-183 (343)
313 PF13874 Nup54: Nucleoporin co 53.6 1.1E+02 0.0024 26.1 8.8 81 284-364 37-117 (141)
314 TIGR00634 recN DNA repair prot 53.2 1.3E+02 0.0029 31.8 11.1 29 353-381 374-402 (563)
315 PF13870 DUF4201: Domain of un 53.0 1.6E+02 0.0035 25.9 11.2 74 288-361 46-133 (177)
316 PRK14063 exodeoxyribonuclease 52.9 81 0.0017 24.1 6.9 30 336-365 33-62 (76)
317 KOG3990 Uncharacterized conser 52.9 66 0.0014 30.3 7.5 64 288-362 229-293 (305)
318 KOG2189 Vacuolar H+-ATPase V0 52.7 40 0.00086 36.8 6.9 57 305-361 56-127 (829)
319 KOG0933 Structural maintenance 52.7 2E+02 0.0043 32.7 12.1 62 302-366 784-845 (1174)
320 COG5374 Uncharacterized conser 52.1 90 0.0019 28.0 7.9 36 308-343 139-174 (192)
321 PF05266 DUF724: Protein of un 51.6 1.9E+02 0.0041 26.2 10.8 15 349-363 161-175 (190)
322 smart00338 BRLZ basic region l 51.5 55 0.0012 23.8 5.7 28 296-323 31-58 (65)
323 PF05529 Bap31: B-cell recepto 51.5 89 0.0019 28.0 8.3 35 308-342 157-191 (192)
324 PF05377 FlaC_arch: Flagella a 51.5 74 0.0016 22.8 5.9 36 308-343 3-38 (55)
325 TIGR03752 conj_TIGR03752 integ 51.4 1.4E+02 0.003 30.9 10.3 43 282-324 64-106 (472)
326 PF03962 Mnd1: Mnd1 family; I 50.8 1.9E+02 0.0041 26.1 10.4 13 354-366 139-151 (188)
327 PF04799 Fzo_mitofusin: fzo-li 50.7 90 0.0019 27.8 7.7 29 301-329 123-151 (171)
328 PF01519 DUF16: Protein of unk 50.6 1.2E+02 0.0027 24.5 7.8 51 288-355 50-100 (102)
329 PF00261 Tropomyosin: Tropomyo 50.6 2.1E+02 0.0046 26.6 13.5 57 311-367 175-231 (237)
330 PF03357 Snf7: Snf7; InterPro 50.6 1.3E+02 0.0028 25.9 9.0 70 287-358 11-80 (171)
331 PRK09343 prefoldin subunit bet 50.5 1.4E+02 0.0031 24.8 8.7 42 303-344 69-110 (121)
332 PF00038 Filament: Intermediat 50.4 2.4E+02 0.0052 27.1 12.5 13 333-345 262-274 (312)
333 KOG3580 Tight junction protein 49.8 1.9E+02 0.0042 30.9 11.0 18 366-383 502-519 (1027)
334 PF03468 XS: XS domain; Inter 49.6 20 0.00043 29.8 3.4 45 52-98 30-75 (116)
335 COG1196 Smc Chromosome segrega 49.4 2.2E+02 0.0049 33.1 12.9 39 308-346 866-904 (1163)
336 KOG0933 Structural maintenance 49.4 2.4E+02 0.0052 32.1 12.1 36 291-326 748-783 (1174)
337 KOG0946 ER-Golgi vesicle-tethe 49.3 1.8E+02 0.0039 32.2 11.0 56 288-343 661-716 (970)
338 PF06120 Phage_HK97_TLTM: Tail 49.3 1.1E+02 0.0024 29.8 8.9 34 288-321 71-104 (301)
339 PRK01156 chromosome segregatio 49.1 2.2E+02 0.0047 31.9 12.5 12 35-46 20-31 (895)
340 PRK00736 hypothetical protein; 49.1 1.1E+02 0.0024 22.8 7.7 14 329-342 36-49 (68)
341 TIGR01069 mutS2 MutS2 family p 49.0 1.7E+02 0.0037 32.4 11.4 8 38-45 213-220 (771)
342 KOG0979 Structural maintenance 49.0 1.5E+02 0.0032 33.6 10.5 14 88-101 484-497 (1072)
343 PRK11091 aerobic respiration c 48.7 2.2E+02 0.0047 31.2 12.3 67 305-371 103-169 (779)
344 PF04201 TPD52: Tumour protein 48.6 1E+02 0.0023 27.1 7.7 31 310-340 34-64 (162)
345 KOG3915 Transcription regulato 48.4 1.2E+02 0.0027 31.1 9.1 22 316-337 546-567 (641)
346 PF04849 HAP1_N: HAP1 N-termin 48.1 2.8E+02 0.006 27.2 11.9 16 48-63 32-47 (306)
347 KOG1029 Endocytic adaptor prot 48.1 2.3E+02 0.0051 31.2 11.5 48 317-364 395-451 (1118)
348 KOG2010 Double stranded RNA bi 47.9 85 0.0019 30.8 7.6 55 291-345 147-201 (405)
349 TIGR02168 SMC_prok_B chromosom 47.9 1.6E+02 0.0035 33.5 11.5 27 288-314 688-714 (1179)
350 KOG1847 mRNA splicing factor [ 47.8 12 0.00026 39.7 2.1 17 305-321 845-861 (878)
351 KOG0161 Myosin class II heavy 47.8 2.5E+02 0.0053 34.5 12.8 26 292-317 1077-1102(1930)
352 COG5570 Uncharacterized small 47.5 89 0.0019 22.1 5.7 51 305-355 5-55 (57)
353 PF06810 Phage_GP20: Phage min 47.2 1.7E+02 0.0036 25.6 9.0 26 280-305 23-48 (155)
354 PF10018 Med4: Vitamin-D-recep 47.1 1.4E+02 0.003 26.8 8.8 39 308-346 25-63 (188)
355 PF15513 DUF4651: Domain of un 47.1 42 0.00091 24.7 4.2 21 54-74 9-29 (62)
356 KOG4360 Uncharacterized coiled 47.0 2.9E+02 0.0064 28.9 11.6 69 291-362 226-301 (596)
357 PF08182 Pedibin: Pedibin/Hym- 47.0 45 0.00098 21.4 3.8 25 289-313 2-26 (35)
358 PF08654 DASH_Dad2: DASH compl 46.9 1.4E+02 0.003 24.3 7.7 45 322-366 17-61 (103)
359 PF13815 Dzip-like_N: Iguana/D 46.9 88 0.0019 25.8 6.9 33 287-319 76-108 (118)
360 TIGR01280 xseB exodeoxyribonuc 46.8 1.2E+02 0.0026 22.6 6.8 30 336-365 29-58 (67)
361 PRK05431 seryl-tRNA synthetase 46.8 64 0.0014 33.0 7.2 23 349-371 79-101 (425)
362 PF14389 Lzipper-MIP1: Leucine 46.7 1.4E+02 0.003 23.4 7.9 25 287-311 11-35 (88)
363 PF15456 Uds1: Up-regulated Du 46.5 1.8E+02 0.0038 24.5 9.0 58 287-345 25-107 (124)
364 PF01765 RRF: Ribosome recycli 46.5 92 0.002 27.3 7.3 21 318-338 104-124 (165)
365 PRK09039 hypothetical protein; 46.5 1.9E+02 0.0042 28.6 10.4 29 311-339 115-143 (343)
366 KOG3915 Transcription regulato 46.4 3.1E+02 0.0067 28.4 11.5 56 288-343 511-566 (641)
367 PF10498 IFT57: Intra-flagella 46.2 1.9E+02 0.0042 28.9 10.3 40 306-345 267-306 (359)
368 PF10234 Cluap1: Clusterin-ass 46.2 2.6E+02 0.0057 26.8 10.7 35 288-322 173-207 (267)
369 KOG3973 Uncharacterized conser 46.0 58 0.0013 32.2 6.3 32 334-367 202-233 (465)
370 KOG0994 Extracellular matrix g 45.8 83 0.0018 36.1 8.0 65 292-356 1226-1297(1758)
371 PF07851 TMPIT: TMPIT-like pro 45.7 2.8E+02 0.0062 27.4 11.1 15 369-384 97-111 (330)
372 PRK02224 chromosome segregatio 45.6 3E+02 0.0066 30.7 13.0 7 41-47 5-11 (880)
373 KOG3119 Basic region leucine z 45.5 1.5E+02 0.0032 28.4 9.0 52 293-345 204-255 (269)
374 KOG0996 Structural maintenance 45.4 2.7E+02 0.0059 32.2 11.9 49 297-345 485-533 (1293)
375 PF09755 DUF2046: Uncharacteri 45.4 3.1E+02 0.0066 26.9 13.0 46 307-352 115-161 (310)
376 PF06364 DUF1068: Protein of u 45.2 1.3E+02 0.0028 26.7 7.6 58 305-362 96-156 (176)
377 PRK10869 recombination and rep 45.2 1E+02 0.0023 32.6 8.7 25 357-381 373-397 (553)
378 KOG4603 TBP-1 interacting prot 45.1 1.5E+02 0.0033 26.4 8.1 59 288-354 83-141 (201)
379 PF10567 Nab6_mRNP_bdg: RNA-re 45.1 41 0.0009 32.5 5.1 78 39-116 15-106 (309)
380 KOG1029 Endocytic adaptor prot 45.1 2.5E+02 0.0055 31.0 11.2 20 298-317 486-505 (1118)
381 TIGR02168 SMC_prok_B chromosom 45.0 2.9E+02 0.0063 31.5 13.0 9 37-45 22-30 (1179)
382 KOG0978 E3 ubiquitin ligase in 44.8 2.9E+02 0.0063 30.2 11.8 18 282-299 494-511 (698)
383 COG0724 RNA-binding proteins ( 44.5 24 0.00052 31.9 3.5 64 35-98 221-285 (306)
384 PF03961 DUF342: Protein of un 44.5 1E+02 0.0022 31.8 8.3 26 287-312 337-362 (451)
385 PF12999 PRKCSH-like: Glucosid 44.3 1.4E+02 0.0031 26.7 8.1 16 328-343 155-170 (176)
386 KOG2077 JNK/SAPK-associated pr 44.3 2E+02 0.0043 30.6 10.1 47 306-352 330-376 (832)
387 PF06320 GCN5L1: GCN5-like pro 44.2 1.9E+02 0.0041 24.1 9.6 67 299-365 41-107 (121)
388 TIGR01730 RND_mfp RND family e 44.0 1.5E+02 0.0032 28.3 9.0 21 342-362 108-128 (322)
389 PF05483 SCP-1: Synaptonemal c 43.7 3.6E+02 0.0078 29.4 12.0 61 287-347 590-650 (786)
390 KOG4410 5-formyltetrahydrofola 43.6 40 0.00087 32.4 4.7 49 38-91 329-378 (396)
391 PRK10869 recombination and rep 43.6 2.2E+02 0.0047 30.2 10.8 42 302-343 338-380 (553)
392 PF15070 GOLGA2L5: Putative go 43.4 1.3E+02 0.0028 32.5 9.1 58 302-362 164-228 (617)
393 TIGR02894 DNA_bind_RsfA transc 43.0 1E+02 0.0022 27.1 6.8 39 307-345 99-137 (161)
394 TIGR02231 conserved hypothetic 43.0 4.1E+02 0.009 27.7 13.9 19 346-364 155-173 (525)
395 KOG4593 Mitotic checkpoint pro 42.8 2.6E+02 0.0056 30.4 10.9 39 284-322 123-161 (716)
396 KOG0962 DNA repair protein RAD 42.7 3.8E+02 0.0082 31.5 12.8 77 291-367 209-292 (1294)
397 PRK10698 phage shock protein P 42.5 2.8E+02 0.0061 25.6 11.9 30 314-343 101-130 (222)
398 PRK00977 exodeoxyribonuclease 42.4 1.3E+02 0.0029 23.1 6.7 31 337-367 39-69 (80)
399 TIGR00414 serS seryl-tRNA synt 42.3 85 0.0018 32.0 7.3 44 340-383 73-116 (418)
400 COG1315 Uncharacterized conser 42.2 1.3E+02 0.0028 31.4 8.3 80 281-365 407-486 (543)
401 PF06810 Phage_GP20: Phage min 42.0 2.4E+02 0.0051 24.6 9.3 25 290-314 26-50 (155)
402 PF04568 IATP: Mitochondrial A 41.7 1.5E+02 0.0032 24.1 7.1 8 275-282 53-60 (100)
403 PF06160 EzrA: Septation ring 41.4 1.9E+02 0.004 30.8 9.9 60 284-343 278-337 (560)
404 TIGR02231 conserved hypothetic 41.4 2.6E+02 0.0057 29.2 11.0 20 343-362 145-164 (525)
405 PF05667 DUF812: Protein of un 41.4 1.8E+02 0.0039 31.2 9.7 12 288-299 339-350 (594)
406 KOG2629 Peroxisomal membrane a 41.0 3E+02 0.0066 26.6 10.1 59 304-365 135-193 (300)
407 PF02388 FemAB: FemAB family; 40.9 1.3E+02 0.0029 30.4 8.5 47 298-344 242-291 (406)
408 PF14193 DUF4315: Domain of un 40.9 1.2E+02 0.0026 23.7 6.2 19 302-320 12-30 (83)
409 KOG1853 LIS1-interacting prote 40.7 3.3E+02 0.0071 25.9 12.2 43 301-343 80-122 (333)
410 KOG0288 WD40 repeat protein Ti 40.7 3E+02 0.0064 28.1 10.4 42 298-339 48-89 (459)
411 PRK04778 septation ring format 40.7 3.1E+02 0.0067 29.2 11.5 32 308-339 379-410 (569)
412 PRK13182 racA polar chromosome 40.6 2.3E+02 0.005 25.3 8.9 59 298-356 85-145 (175)
413 PF06156 DUF972: Protein of un 40.6 1.6E+02 0.0034 24.1 7.2 29 289-317 6-34 (107)
414 TIGR02894 DNA_bind_RsfA transc 40.4 2.6E+02 0.0056 24.7 10.4 28 316-343 101-128 (161)
415 TIGR02338 gimC_beta prefoldin, 40.3 2E+02 0.0043 23.3 8.4 36 307-342 69-104 (110)
416 PF11594 Med28: Mediator compl 40.2 1.3E+02 0.0028 24.6 6.5 30 314-343 44-73 (106)
417 PF06818 Fez1: Fez1; InterPro 40.1 2.4E+02 0.0053 25.8 9.0 6 335-340 89-94 (202)
418 PF13166 AAA_13: AAA domain 39.8 3.6E+02 0.0077 29.2 12.1 18 361-378 462-479 (712)
419 TIGR02338 gimC_beta prefoldin, 39.8 95 0.0021 25.2 6.0 33 288-320 71-103 (110)
420 PF06156 DUF972: Protein of un 39.7 2.1E+02 0.0046 23.4 7.9 30 288-317 12-41 (107)
421 PF11853 DUF3373: Protein of u 39.6 26 0.00057 36.3 3.1 28 306-340 32-59 (489)
422 PF05911 DUF869: Plant protein 39.6 2.4E+02 0.0051 31.3 10.4 86 279-372 73-158 (769)
423 PF00769 ERM: Ezrin/radixin/mo 39.4 3.1E+02 0.0068 25.7 10.2 29 293-321 35-63 (246)
424 PF10475 DUF2450: Protein of u 39.0 3.4E+02 0.0073 26.1 10.6 63 298-364 74-139 (291)
425 PF03310 Cauli_DNA-bind: Cauli 38.8 1.5E+02 0.0033 24.8 6.8 24 316-339 35-58 (121)
426 PF07526 POX: Associated with 38.8 57 0.0012 28.1 4.6 31 332-365 76-106 (140)
427 PRK10636 putative ABC transpor 38.8 1.7E+02 0.0037 31.5 9.4 22 302-323 567-588 (638)
428 PF12329 TMF_DNA_bd: TATA elem 38.5 1.7E+02 0.0038 22.1 8.7 55 291-345 12-66 (74)
429 KOG2264 Exostosin EXT1L [Signa 38.5 2.6E+02 0.0057 29.7 9.9 62 281-345 79-140 (907)
430 PF08336 P4Ha_N: Prolyl 4-Hydr 38.5 1.2E+02 0.0026 25.4 6.6 41 316-356 5-45 (134)
431 KOG0240 Kinesin (SMY1 subfamil 38.4 4E+02 0.0087 28.3 11.3 18 81-98 172-189 (607)
432 KOG4483 Uncharacterized conser 38.4 79 0.0017 31.9 6.0 59 35-99 387-446 (528)
433 smart00596 PRE_C2HC PRE_C2HC d 38.4 72 0.0016 24.0 4.4 60 54-116 2-63 (69)
434 COG4477 EzrA Negative regulato 38.1 3.5E+02 0.0076 28.5 10.7 76 288-363 358-433 (570)
435 KOG1003 Actin filament-coating 38.1 3.2E+02 0.0069 25.0 11.4 31 334-364 166-196 (205)
436 PF02646 RmuC: RmuC family; I 38.0 1.5E+02 0.0032 28.8 8.0 49 315-366 34-85 (304)
437 PF09730 BicD: Microtubule-ass 38.0 2.9E+02 0.0063 30.4 10.7 58 291-348 398-455 (717)
438 PLN02320 seryl-tRNA synthetase 38.0 94 0.002 32.6 6.8 43 341-383 135-177 (502)
439 PHA00276 phage lambda Rz-like 37.9 1.1E+02 0.0023 26.4 6.0 58 305-365 35-92 (144)
440 PF10805 DUF2730: Protein of u 37.9 1.8E+02 0.0039 23.6 7.2 10 290-299 48-57 (106)
441 PF00038 Filament: Intermediat 37.8 3.6E+02 0.0078 25.8 10.7 54 293-346 84-137 (312)
442 PF07530 PRE_C2HC: Associated 37.7 80 0.0017 23.5 4.7 60 54-116 2-63 (68)
443 PF09763 Sec3_C: Exocyst compl 37.6 3.4E+02 0.0073 29.6 11.5 59 278-336 38-96 (701)
444 PF01920 Prefoldin_2: Prefoldi 37.3 2E+02 0.0043 22.5 7.5 35 307-341 64-98 (106)
445 PF15619 Lebercilin: Ciliary p 37.2 3.2E+02 0.0069 24.8 12.9 69 298-366 82-155 (194)
446 KOG2891 Surface glycoprotein [ 37.2 3.9E+02 0.0084 25.8 11.4 35 331-365 395-429 (445)
447 PF09731 Mitofilin: Mitochondr 37.2 5.3E+02 0.011 27.3 13.4 29 324-352 366-394 (582)
448 PF02388 FemAB: FemAB family; 37.0 1.3E+02 0.0027 30.6 7.6 16 86-101 74-89 (406)
449 KOG4552 Vitamin-D-receptor int 36.9 2.6E+02 0.0056 25.8 8.5 57 308-364 63-127 (272)
450 PF12325 TMF_TATA_bd: TATA ele 36.8 2.5E+02 0.0054 23.4 11.1 40 289-328 21-60 (120)
451 PRK12705 hypothetical protein; 36.8 5.3E+02 0.011 27.2 12.5 25 347-371 158-182 (508)
452 PRK15178 Vi polysaccharide exp 36.8 1.3E+02 0.0028 30.9 7.5 59 290-348 248-308 (434)
453 KOG0998 Synaptic vesicle prote 36.7 74 0.0016 35.6 6.2 47 329-375 550-600 (847)
454 KOG4643 Uncharacterized coiled 36.7 1.6E+02 0.0035 33.4 8.5 40 304-343 414-453 (1195)
455 PF05531 NPV_P10: Nucleopolyhe 36.7 1.9E+02 0.0042 22.1 7.1 43 296-338 9-51 (75)
456 PF04799 Fzo_mitofusin: fzo-li 36.6 1.5E+02 0.0032 26.4 6.9 12 308-319 123-134 (171)
457 PF12072 DUF3552: Domain of un 36.6 3.3E+02 0.0071 24.7 12.3 42 300-341 73-114 (201)
458 PF10498 IFT57: Intra-flagella 36.5 4.5E+02 0.0098 26.3 12.2 48 300-347 268-315 (359)
459 PF12097 DUF3573: Protein of u 36.4 28 0.0006 34.3 2.5 33 316-348 32-64 (383)
460 PF07926 TPR_MLP1_2: TPR/MLP1/ 36.3 2.6E+02 0.0056 23.5 10.5 77 289-365 1-91 (132)
461 PF08232 Striatin: Striatin fa 36.2 1.4E+02 0.0031 25.3 6.6 43 278-325 24-66 (134)
462 KOG2751 Beclin-like protein [S 36.2 2.9E+02 0.0062 28.3 9.6 86 285-370 144-231 (447)
463 KOG4593 Mitotic checkpoint pro 36.1 3.9E+02 0.0085 29.1 11.0 75 280-354 119-193 (716)
464 PF04108 APG17: Autophagy prot 36.1 3.1E+02 0.0068 27.9 10.2 88 287-374 251-342 (412)
465 KOG0239 Kinesin (KAR3 subfamil 36.0 3.6E+02 0.0078 29.5 11.1 81 286-366 236-316 (670)
466 PF09789 DUF2353: Uncharacteri 35.8 2.7E+02 0.0059 27.4 9.3 72 298-369 133-222 (319)
467 cd07606 BAR_SFC_plant The Bin/ 35.7 3.5E+02 0.0075 24.7 9.8 90 280-370 99-189 (202)
468 COG5491 VPS24 Conserved protei 35.7 2.5E+02 0.0053 25.8 8.4 68 296-363 5-72 (204)
469 COG0172 SerS Seryl-tRNA synthe 35.6 1.6E+02 0.0036 30.1 8.0 90 291-386 29-118 (429)
470 KOG4438 Centromere-associated 35.6 3.9E+02 0.0084 27.4 10.3 75 287-361 244-318 (446)
471 KOG0243 Kinesin-like protein [ 35.6 6.5E+02 0.014 28.9 13.1 95 276-370 447-548 (1041)
472 PF07957 DUF3294: Protein of u 35.5 82 0.0018 29.1 5.3 34 306-339 5-38 (216)
473 PF12269 zf-CpG_bind_C: CpG bi 35.4 1.7E+02 0.0038 27.4 7.5 59 285-343 23-108 (236)
474 TIGR01010 BexC_CtrB_KpsE polys 35.4 2.6E+02 0.0057 27.5 9.5 90 278-367 164-266 (362)
475 KOG0971 Microtubule-associated 35.4 3E+02 0.0065 31.0 10.1 102 260-361 386-493 (1243)
476 PF15066 CAGE1: Cancer-associa 35.3 2E+02 0.0044 29.6 8.4 61 280-346 459-527 (527)
477 COG1422 Predicted membrane pro 35.2 1.3E+02 0.0028 27.5 6.5 42 298-339 72-121 (201)
478 PF13094 CENP-Q: CENP-Q, a CEN 35.2 2.7E+02 0.0059 24.0 8.5 56 287-342 23-78 (160)
479 PF07058 Myosin_HC-like: Myosi 35.2 4.4E+02 0.0096 25.8 10.4 81 276-359 2-82 (351)
480 COG5185 HEC1 Protein involved 35.1 1.4E+02 0.0031 30.8 7.3 87 287-373 333-419 (622)
481 PF04977 DivIC: Septum formati 35.1 1.1E+02 0.0024 22.6 5.4 36 282-317 15-50 (80)
482 cd07642 BAR_ASAP2 The Bin/Amph 35.1 2.9E+02 0.0063 25.6 8.8 92 279-370 98-198 (215)
483 PRK08032 fliD flagellar cappin 35.1 1.2E+02 0.0026 31.4 7.1 48 285-335 414-461 (462)
484 PRK14069 exodeoxyribonuclease 35.1 2E+02 0.0044 23.0 6.8 54 311-364 11-64 (95)
485 COG0598 CorA Mg2+ and Co2+ tra 35.1 4.2E+02 0.0092 25.7 10.7 81 287-370 157-254 (322)
486 KOG4674 Uncharacterized conser 34.9 2.4E+02 0.0052 34.2 10.0 68 289-359 1312-1379(1822)
487 KOG0977 Nuclear envelope prote 34.7 5.5E+02 0.012 27.3 11.8 95 265-362 78-174 (546)
488 PF14193 DUF4315: Domain of un 34.5 1.2E+02 0.0027 23.6 5.4 35 293-327 3-37 (83)
489 PF04849 HAP1_N: HAP1 N-termin 34.4 4.5E+02 0.0098 25.7 10.5 78 283-360 205-282 (306)
490 COG2433 Uncharacterized conser 34.3 2.9E+02 0.0062 29.6 9.5 65 277-341 446-510 (652)
491 PF12958 DUF3847: Protein of u 34.3 2E+02 0.0043 22.6 6.5 43 286-328 3-47 (86)
492 TIGR00998 8a0101 efflux pump m 34.3 3.3E+02 0.0071 26.2 9.9 76 287-362 76-151 (334)
493 PF10359 Fmp27_WPPW: RNA pol I 34.1 1.2E+02 0.0027 31.4 7.1 70 287-356 159-230 (475)
494 PF15397 DUF4618: Domain of un 34.0 4E+02 0.0086 25.4 9.8 85 287-374 63-158 (258)
495 COG2433 Uncharacterized conser 34.0 6.3E+02 0.014 27.2 12.4 86 274-362 422-507 (652)
496 COG1729 Uncharacterized protei 33.9 88 0.0019 29.9 5.4 44 283-327 55-99 (262)
497 PF02185 HR1: Hr1 repeat; Int 33.8 1.9E+02 0.0042 21.3 6.7 58 305-362 1-59 (70)
498 PF14662 CCDC155: Coiled-coil 33.7 3.7E+02 0.008 24.4 9.9 69 294-362 4-72 (193)
499 PF00901 Orbi_VP5: Orbivirus o 33.6 4.1E+02 0.009 27.7 10.4 78 278-362 108-185 (508)
500 COG5117 NOC3 Protein involved 33.6 1.9E+02 0.004 30.0 7.8 113 256-368 96-235 (657)
No 1
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.81 E-value=8.8e-19 Score=151.42 Aligned_cols=80 Identities=33% Similarity=0.597 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
+-.+.||||||+..+++.+|+.+|..||+|..|+|..+ +.|||||+|+++.+|+.|+..|+|..|.|..|.|+++.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 34789999999999999999999999999999999886 67899999999999999999999999999999999998
Q ss_pred ccCc
Q 016629 117 TRGR 120 (386)
Q Consensus 117 ~~~~ 120 (386)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6655
No 2
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=2.3e-18 Score=159.79 Aligned_cols=93 Identities=29% Similarity=0.527 Sum_probs=84.3
Q ss_pred hhhcCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceecc
Q 016629 29 EERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (386)
Q Consensus 29 ~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G 107 (386)
...+.+..++-+||||+-|++++++..|+..|+.||+|..|.|+.+..| +++|||||+|.++.+...|++..+|..|+|
T Consensus 91 ~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 91 NNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 3345555678899999999999999999999999999999999999888 999999999999999999999999999999
Q ss_pred EEEEEEeecccCcC
Q 016629 108 RVVRVSEVATRGRK 121 (386)
Q Consensus 108 r~L~V~~a~~~~~~ 121 (386)
+.|.|.+......+
T Consensus 171 rri~VDvERgRTvk 184 (335)
T KOG0113|consen 171 RRILVDVERGRTVK 184 (335)
T ss_pred cEEEEEeccccccc
Confidence 99999988665443
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.77 E-value=1.2e-17 Score=144.86 Aligned_cols=84 Identities=33% Similarity=0.718 Sum_probs=78.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
...++|||+|||+.+++++|+++|.+||.|..|.|+.+..+ +++|||||+|.+.++|+.|+..|++..|+|+.|.|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 44779999999999999999999999999999999999877 89999999999999999999999999999999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.....
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76544
No 4
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.75 E-value=5.8e-17 Score=143.49 Aligned_cols=87 Identities=36% Similarity=0.597 Sum_probs=81.0
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
+..++.-++|-|-||.+.++.++|..+|++||.|.+|.|+.++.| .++|||||-|....+|+.|+.+|+|.+|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 345667789999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred EEeecccC
Q 016629 112 VSEVATRG 119 (386)
Q Consensus 112 V~~a~~~~ 119 (386)
|.+|.-..
T Consensus 87 Vq~arygr 94 (256)
T KOG4207|consen 87 VQMARYGR 94 (256)
T ss_pred ehhhhcCC
Confidence 99987543
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.61 E-value=5.3e-15 Score=146.00 Aligned_cols=82 Identities=33% Similarity=0.495 Sum_probs=77.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
.+.+|||+|||+.+++++|.++|++||.|..|+|+.+..+ .++|||||+|.+.++|..||..|||..|+|+.|.|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 3557999999999999999999999999999999999866 899999999999999999999999999999999999998
Q ss_pred ccC
Q 016629 117 TRG 119 (386)
Q Consensus 117 ~~~ 119 (386)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 654
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=8.7e-15 Score=109.80 Aligned_cols=70 Identities=34% Similarity=0.764 Sum_probs=66.4
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 42 lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
|||+|||+++++++|.++|.+||.|..+.+..+..+..+|||||+|.+.++|+.|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999999999999985558899999999999999999999999999999885
No 7
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=7.1e-15 Score=121.11 Aligned_cols=85 Identities=25% Similarity=0.405 Sum_probs=78.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
....++||||||++-++|+.|.++|++||+|..|.|-.++.+ .+.|||||+|...++|+.|+..++|+.++.++|.|.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 446899999999999999999999999999999999999998 7899999999999999999999999999999999998
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
.-.-..
T Consensus 113 D~GF~e 118 (153)
T KOG0121|consen 113 DAGFVE 118 (153)
T ss_pred cccchh
Confidence 765443
No 8
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.7e-14 Score=124.60 Aligned_cols=81 Identities=31% Similarity=0.515 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
...++|||||||.++.+.+|+++|.+||.|..|.+..-+ .+.+||||+|+++.+|+.||..-+|..++|..|.|+|+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 457899999999999999999999999999999885432 367899999999999999999999999999999999987
Q ss_pred ccC
Q 016629 117 TRG 119 (386)
Q Consensus 117 ~~~ 119 (386)
...
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 644
No 9
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.54 E-value=2.6e-14 Score=141.08 Aligned_cols=82 Identities=27% Similarity=0.550 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
+.++|||+|||+.+++++|+++|+.||+|..|.|+.++.+ +++|||||+|.+.++|+.||..|+|..|.|+.|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 4689999999999999999999999999999999999876 899999999999999999999999999999999999987
Q ss_pred ccC
Q 016629 117 TRG 119 (386)
Q Consensus 117 ~~~ 119 (386)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 543
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.53 E-value=3.3e-14 Score=140.02 Aligned_cols=84 Identities=25% Similarity=0.420 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
.....++|||+|||+++|+++|+++|..||.|+.|+|+.+..+ +++|||||+|.++++|+.||..|+|..|.+++|.|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 4456789999999999999999999999999999999999877 899999999999999999999999999999999999
Q ss_pred eeccc
Q 016629 114 EVATR 118 (386)
Q Consensus 114 ~a~~~ 118 (386)
++.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88653
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.48 E-value=4.7e-13 Score=131.89 Aligned_cols=83 Identities=28% Similarity=0.543 Sum_probs=76.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceecc--EEEEEEe
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSE 114 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G--r~L~V~~ 114 (386)
..++|||+|||+.+|+++|+++|++||.|..|.|+.++.+ +++|||||+|.+.++|++||..|++..+.| ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 4678999999999999999999999999999999998866 899999999999999999999999998865 7899999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 976544
No 12
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.47 E-value=3.1e-13 Score=102.05 Aligned_cols=70 Identities=33% Similarity=0.723 Sum_probs=64.5
Q ss_pred EEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 42 VYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 42 lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
|||+|||+.+++++|.++|..||.|..+.+..++.+.++|+|||+|.+.++|..|+..++|..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999999987777899999999999999999999999999999874
No 13
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=1.3e-13 Score=114.63 Aligned_cols=85 Identities=26% Similarity=0.415 Sum_probs=79.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
.-.+..|||.++...+|+++|.+.|..||+|+.|++..++.+ ..+|||+|+|++.++|++|+..|||..|.|..|.|.|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw 148 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDW 148 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEE
Confidence 445789999999999999999999999999999999999888 8999999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+...+.
T Consensus 149 ~Fv~gp 154 (170)
T KOG0130|consen 149 CFVKGP 154 (170)
T ss_pred EEecCC
Confidence 987654
No 14
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1e-13 Score=131.54 Aligned_cols=86 Identities=23% Similarity=0.429 Sum_probs=80.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
..+|.+.|||+.|++.+|.++|+-+|+.||.|..|.|+.+..+ .+..||||+|++.+++++|+-.|++..|++++|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 3577899999999999999999999999999999999999888 889999999999999999999999999999999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
|+.+-..
T Consensus 315 FSQSVsk 321 (479)
T KOG0415|consen 315 FSQSVSK 321 (479)
T ss_pred hhhhhhh
Confidence 9877555
No 15
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=2.2e-13 Score=128.26 Aligned_cols=82 Identities=29% Similarity=0.607 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
.+...+|+|.|||+...+-||..+|.+||.|.+|.|+.+..+ +||||||+|++.++|+.|-.+|||..|.||+|.|..|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~A 171 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNA 171 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeeceEEEEecc
Confidence 456789999999999999999999999999999999987554 8999999999999999999999999999999999988
Q ss_pred ccc
Q 016629 116 ATR 118 (386)
Q Consensus 116 ~~~ 118 (386)
+.+
T Consensus 172 Tar 174 (376)
T KOG0125|consen 172 TAR 174 (376)
T ss_pred chh
Confidence 654
No 16
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=1.6e-13 Score=124.28 Aligned_cols=79 Identities=32% Similarity=0.672 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
..++||||||+|.+..+.|+++|++||+|++..|+.|+.+ +++|||||+|.+.++|..|++. ..-.|+||+..|++|.
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 4579999999999999999999999999999999999998 9999999999999999999996 4457899999999886
Q ss_pred c
Q 016629 117 T 117 (386)
Q Consensus 117 ~ 117 (386)
-
T Consensus 90 l 90 (247)
T KOG0149|consen 90 L 90 (247)
T ss_pred h
Confidence 4
No 17
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=3.7e-13 Score=122.32 Aligned_cols=83 Identities=33% Similarity=0.506 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
-++.++|-|.||+.++++.+|+++|.+||.|..|.|..++.| .++|||||.|.+.++|+.||+.|||.-++.-.|.|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 446789999999999999999999999999999999999998 8999999999999999999999999999999999999
Q ss_pred eccc
Q 016629 115 VATR 118 (386)
Q Consensus 115 a~~~ 118 (386)
++|.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9874
No 18
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.44 E-value=5.8e-13 Score=124.18 Aligned_cols=75 Identities=23% Similarity=0.393 Sum_probs=69.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
.++|||+|||+.+++++|+++|+.||.|..|.|+.+.. .+|||||+|.++++|+.||. |+|..|.|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 57999999999999999999999999999999988754 56899999999999999996 99999999999998744
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.40 E-value=1.1e-12 Score=136.50 Aligned_cols=82 Identities=26% Similarity=0.484 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
..++|||+|||+++++++|..+|+.||.|..|.|+.+..+ .++|||||+|.+.++|..||..|||..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 4579999999999999999999999999999999999877 799999999999999999999999999999999999987
Q ss_pred ccC
Q 016629 117 TRG 119 (386)
Q Consensus 117 ~~~ 119 (386)
..+
T Consensus 283 ~pP 285 (612)
T TIGR01645 283 TPP 285 (612)
T ss_pred CCc
Confidence 644
No 20
>smart00362 RRM_2 RNA recognition motif.
Probab=99.40 E-value=2.2e-12 Score=95.70 Aligned_cols=72 Identities=35% Similarity=0.704 Sum_probs=67.2
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
+|||+|||..+++++|..+|..||.|..+.+..+. +.+.|+|||+|.+.++|+.|+..|+|..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999998876 5678999999999999999999999999999998873
No 21
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=6.2e-14 Score=122.13 Aligned_cols=81 Identities=35% Similarity=0.758 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
+...|||||||+.+|+.+|.-+|++||+|+.|.+++|..| +++||||+.|++..+..-|+..|||..|.|+.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4679999999999999999999999999999999999998 999999999999999999999999999999999998775
Q ss_pred cc
Q 016629 117 TR 118 (386)
Q Consensus 117 ~~ 118 (386)
.-
T Consensus 114 ~Y 115 (219)
T KOG0126|consen 114 NY 115 (219)
T ss_pred cc
Confidence 43
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.39 E-value=2.2e-12 Score=131.95 Aligned_cols=80 Identities=30% Similarity=0.621 Sum_probs=76.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
...+|||+|||+.+++++|..+|..||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|.|++|.|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 3689999999999999999999999999999999999887 899999999999999999999999999999999999987
Q ss_pred c
Q 016629 117 T 117 (386)
Q Consensus 117 ~ 117 (386)
.
T Consensus 265 ~ 265 (457)
T TIGR01622 265 D 265 (457)
T ss_pred C
Confidence 3
No 23
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.38 E-value=1.3e-12 Score=136.06 Aligned_cols=81 Identities=30% Similarity=0.624 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
....++|||||||+.+++++|+++|.+||.|..|.|+.++.+ +++|||||+|.+.++|+.|+..|||..|+|+.|.|.+
T Consensus 104 ~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~r 183 (612)
T TIGR01645 104 LAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 183 (612)
T ss_pred hcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecc
Confidence 345789999999999999999999999999999999999877 8999999999999999999999999999999999985
Q ss_pred ec
Q 016629 115 VA 116 (386)
Q Consensus 115 a~ 116 (386)
..
T Consensus 184 p~ 185 (612)
T TIGR01645 184 PS 185 (612)
T ss_pred cc
Confidence 43
No 24
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.38 E-value=8.6e-12 Score=129.58 Aligned_cols=77 Identities=27% Similarity=0.531 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcC--CCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKY--GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
....+|||+||++.+++++|+++|+.| |.|..|.++. +||||+|.+.++|+.|+..|||..|+|+.|.|.|
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 345789999999999999999999999 9999998864 4999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 987544
No 25
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=1.2e-12 Score=128.77 Aligned_cols=77 Identities=26% Similarity=0.466 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCCh--hhHHHHHHhcCCceeccEEEEEEee
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNP--RSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~--~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
...+||||||++.+++++|..+|..||.|..|.|++. + .+|||||+|... .++.+||..|||..++|+.|+|..|
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--T-GRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--K-GRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--c-CCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 4679999999999999999999999999999999943 2 399999999987 7899999999999999999999987
Q ss_pred cc
Q 016629 116 AT 117 (386)
Q Consensus 116 ~~ 117 (386)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 54
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.2e-13 Score=120.06 Aligned_cols=88 Identities=27% Similarity=0.510 Sum_probs=82.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
....++||||+|...+++.-|...|-+||.|..|.|+.+..+ +.+|||||+|...++|.+||..||+..+.|+.|+|++
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 345789999999999999999999999999999999999888 8999999999999999999999999999999999999
Q ss_pred ecccCcCCC
Q 016629 115 VATRGRKSN 123 (386)
Q Consensus 115 a~~~~~~~~ 123 (386)
|.|......
T Consensus 87 AkP~kikeg 95 (298)
T KOG0111|consen 87 AKPEKIKEG 95 (298)
T ss_pred cCCccccCC
Confidence 998766543
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.36 E-value=3.3e-12 Score=132.36 Aligned_cols=81 Identities=25% Similarity=0.559 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
....+|||+|||+.+++++|.++|..||.|..+.|+.+..+ .++|||||+|.+.++|..||..|+|..|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999998766 78999999999999999999999999999999999998
Q ss_pred cc
Q 016629 116 AT 117 (386)
Q Consensus 116 ~~ 117 (386)
..
T Consensus 373 ~~ 374 (509)
T TIGR01642 373 CV 374 (509)
T ss_pred cc
Confidence 64
No 28
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.35 E-value=3.7e-12 Score=133.82 Aligned_cols=79 Identities=32% Similarity=0.583 Sum_probs=74.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeeccc
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~ 118 (386)
.+|||||||+++|+++|.++|.+||.|..|+|+.+..+ +++|||||+|.+.++|+.|+..|++..|.|++|.|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 37999999999999999999999999999999999887 89999999999999999999999999999999999997543
No 29
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2e-12 Score=119.06 Aligned_cols=84 Identities=31% Similarity=0.579 Sum_probs=79.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
.....||||-|...++.++|++.|.+||+|.+++|++|..| ++||||||.|.+.++|+.||..|||..|++|.|+..||
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 34678999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
..+..
T Consensus 140 TRKp~ 144 (321)
T KOG0148|consen 140 TRKPS 144 (321)
T ss_pred ccCcc
Confidence 87663
No 30
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=4.1e-12 Score=101.20 Aligned_cols=83 Identities=20% Similarity=0.428 Sum_probs=74.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
++......|||.|||+.+|.+++.++|.+||.|..|+|-..+. .+|.|||.|++..+|..|+..|+|..+.++.|.|-
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~--TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE--TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC--cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 3444578999999999999999999999999999999977655 47899999999999999999999999999999998
Q ss_pred eeccc
Q 016629 114 EVATR 118 (386)
Q Consensus 114 ~a~~~ 118 (386)
+-.+.
T Consensus 91 yyq~~ 95 (124)
T KOG0114|consen 91 YYQPE 95 (124)
T ss_pred ecCHH
Confidence 76553
No 31
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.34 E-value=5.2e-12 Score=116.11 Aligned_cols=75 Identities=24% Similarity=0.348 Sum_probs=68.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
.+.+|||+||++.+|+.+|+++|+.||+|..|.|+.+. ...+||||+|.++++|+.|+. |+|..|.+.+|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeC
Confidence 46899999999999999999999999999999999874 345899999999999999996 9999999999998643
No 32
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.33 E-value=1.2e-11 Score=92.15 Aligned_cols=74 Identities=36% Similarity=0.740 Sum_probs=69.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
+|||+|||+.+++++|..+|..||.|..+.+..+..+.+.|+|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48999999999999999999999999999999887777789999999999999999999999999999999864
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.33 E-value=1.8e-12 Score=113.22 Aligned_cols=82 Identities=30% Similarity=0.495 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
+-+...+||||||+..++++.|.++|-+.|+|+.++|+.++.+ ...|||||+|.++++|+-|++.||+..+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 3456789999999999999999999999999999999999999 699999999999999999999999999999999999
Q ss_pred eec
Q 016629 114 EVA 116 (386)
Q Consensus 114 ~a~ 116 (386)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 887
No 34
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.32 E-value=5.9e-12 Score=132.30 Aligned_cols=83 Identities=25% Similarity=0.544 Sum_probs=77.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
.....+|||+||++.+++++|+++|+.||.|..|.|+.+..+.++|||||+|.+.++|..|+..|||..|+|++|.|.+|
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34567899999999999999999999999999999999966689999999999999999999999999999999999999
Q ss_pred ccc
Q 016629 116 ATR 118 (386)
Q Consensus 116 ~~~ 118 (386)
...
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 764
No 35
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=8.8e-12 Score=114.20 Aligned_cols=102 Identities=27% Similarity=0.394 Sum_probs=86.3
Q ss_pred CCcchhhhhhhhhhhcCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHH
Q 016629 17 VPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVD 95 (386)
Q Consensus 17 ~p~~~~~~~~~~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~ 95 (386)
+|+....+..+.....+.....+..|||-||.+++++.-|..+|.+||.|..|+|++|..+ +++|||||.+.+.++|..
T Consensus 256 sP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAam 335 (360)
T KOG0145|consen 256 SPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAM 335 (360)
T ss_pred CCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHH
Confidence 4444444444433344444455789999999999999999999999999999999999998 999999999999999999
Q ss_pred HHHhcCCceeccEEEEEEeeccc
Q 016629 96 AINDMNGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 96 Ai~~l~g~~i~Gr~L~V~~a~~~ 118 (386)
||..|||..++++.|.|.|....
T Consensus 336 Ai~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 336 AIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999987643
No 36
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=9.2e-12 Score=114.77 Aligned_cols=89 Identities=31% Similarity=0.525 Sum_probs=79.9
Q ss_pred hhhhcCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceecc
Q 016629 28 IEERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (386)
Q Consensus 28 ~~~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G 107 (386)
..+..+...+..++||||||+..+++++|++.|+.||.|.+|+|.++ +|||||.|.+.+.|..||..||+..|.|
T Consensus 153 fdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tkEaAahAIv~mNntei~G 227 (321)
T KOG0148|consen 153 FDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETKEAAAHAIVQMNNTEIGG 227 (321)
T ss_pred HHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecchhhHHHHHHHhcCceeCc
Confidence 34555666788999999999999999999999999999999999886 6799999999999999999999999999
Q ss_pred EEEEEEeecccCcC
Q 016629 108 RVVRVSEVATRGRK 121 (386)
Q Consensus 108 r~L~V~~a~~~~~~ 121 (386)
..++|.|-+.....
T Consensus 228 ~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 228 QLVRCSWGKEGDDG 241 (321)
T ss_pred eEEEEeccccCCCC
Confidence 99999998765443
No 37
>smart00360 RRM RNA recognition motif.
Probab=99.31 E-value=1.1e-11 Score=91.46 Aligned_cols=70 Identities=36% Similarity=0.758 Sum_probs=65.3
Q ss_pred EcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 44 VGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 44 VgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
|+|||..+++++|..+|..||.|..+.+..++.+ .++|||||+|.+.++|..|+..|++..++|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999999999999999999999988765 789999999999999999999999999999998873
No 38
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.30 E-value=1.3e-11 Score=126.37 Aligned_cols=80 Identities=29% Similarity=0.483 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
.+..+|||+|||+.+++++|.++|.+||.|..|.|+.+..+ .++|||||+|.+.++|..||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 34679999999999999999999999999999999999877 899999999999999999997 8999999999999876
Q ss_pred cc
Q 016629 116 AT 117 (386)
Q Consensus 116 ~~ 117 (386)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 43
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.28 E-value=1e-11 Score=129.00 Aligned_cols=77 Identities=30% Similarity=0.532 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec-cEEEEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~-Gr~L~V~ 113 (386)
...++|||+|||+++++++|..+|++||.|..|+|+.+..+.++|||||+|.+.++|+.||..||+..|. |+.|.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 3468999999999999999999999999999999999965699999999999999999999999999885 6666554
No 40
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.28 E-value=1.6e-11 Score=114.28 Aligned_cols=79 Identities=37% Similarity=0.793 Sum_probs=75.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
..+|||+|||+.+++++|.++|..||.|..|.|..++.+ .++|||||+|.+.++|..|+..|+|..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 699999999999999999999999999999999999755 8999999999999999999999999999999999999764
No 41
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.25 E-value=9.5e-10 Score=110.19 Aligned_cols=83 Identities=27% Similarity=0.591 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
-+..|||.+|...+...+|..+|++||+|+..+|+.+..+ ..+||+||++.+.++|..+|..|+-+.|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 3578999999999999999999999999999999998776 789999999999999999999999999999999999887
Q ss_pred ccCc
Q 016629 117 TRGR 120 (386)
Q Consensus 117 ~~~~ 120 (386)
....
T Consensus 484 NEp~ 487 (940)
T KOG4661|consen 484 NEPG 487 (940)
T ss_pred cCcc
Confidence 6544
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.24 E-value=3e-11 Score=124.65 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
++.++|||+|||+ .+|+++|..+|+.||.|..|+|+.+ .+|||||+|.+.++|..|+..|||..|.|++|.|.++
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 4678999999998 6999999999999999999999886 4689999999999999999999999999999999987
Q ss_pred ccc
Q 016629 116 ATR 118 (386)
Q Consensus 116 ~~~ 118 (386)
...
T Consensus 349 ~~~ 351 (481)
T TIGR01649 349 KQQ 351 (481)
T ss_pred ccc
Confidence 654
No 43
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=2.5e-11 Score=121.14 Aligned_cols=83 Identities=25% Similarity=0.479 Sum_probs=78.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
+...|.|.||||.+...+|..+|+.||.|..|.|+....++..|||||+|....+|..|++.|||..|+|++|.|.||-+
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 47799999999999999999999999999999999988887779999999999999999999999999999999999987
Q ss_pred cCc
Q 016629 118 RGR 120 (386)
Q Consensus 118 ~~~ 120 (386)
...
T Consensus 196 Kd~ 198 (678)
T KOG0127|consen 196 KDT 198 (678)
T ss_pred ccc
Confidence 654
No 44
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=4.5e-11 Score=116.88 Aligned_cols=79 Identities=28% Similarity=0.524 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceec-cEEEEEEe
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVSE 114 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~-Gr~L~V~~ 114 (386)
+.++-||||.||.++.|++|.-+|++.|+|-.++|+.++.+ .++|||||+|.+.+.|+.||..||++.|. |+.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 55799999999999999999999999999999999999776 99999999999999999999999999885 88888875
Q ss_pred e
Q 016629 115 V 115 (386)
Q Consensus 115 a 115 (386)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 4
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.20 E-value=6.1e-11 Score=122.36 Aligned_cols=76 Identities=22% Similarity=0.247 Sum_probs=69.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhc--CCceeccEEEEEEee
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM--NGRTIDGRVVRVSEV 115 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l--~g~~i~Gr~L~V~~a 115 (386)
+..+|||+|||+.+++++|.++|++||.|..|.|+. .+|||||+|.+.++|+.|++.| ++..|.|++|.|.|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 467999999999999999999999999999999986 3579999999999999999864 788999999999998
Q ss_pred ccc
Q 016629 116 ATR 118 (386)
Q Consensus 116 ~~~ 118 (386)
...
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 653
No 46
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.19 E-value=3.5e-11 Score=120.74 Aligned_cols=81 Identities=36% Similarity=0.696 Sum_probs=77.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeeccc
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~ 118 (386)
+.|||||+|+++++++|..+|+..|.|..++++.|+.+ +++||||++|.+.++|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999998 99999999999999999999999999999999999998754
Q ss_pred Cc
Q 016629 119 GR 120 (386)
Q Consensus 119 ~~ 120 (386)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 47
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=6.3e-11 Score=108.64 Aligned_cols=84 Identities=29% Similarity=0.541 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
....+.|.|--||.++|+++|+.+|...|+|.+|++++|+.+ ++.||+||.|.++++|++|+..|||..+..+.|+|.|
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 345678999999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred ecccC
Q 016629 115 VATRG 119 (386)
Q Consensus 115 a~~~~ 119 (386)
|++..
T Consensus 118 ARPSs 122 (360)
T KOG0145|consen 118 ARPSS 122 (360)
T ss_pred ccCCh
Confidence 98763
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=2.8e-11 Score=111.36 Aligned_cols=86 Identities=30% Similarity=0.539 Sum_probs=80.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
...++++.|||-.||.+....+|..+|-.||-|++.+|..|+.| .+|+|+||.|+++.+|+.||..|||+.|+-++|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 35678999999999999999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred EeecccC
Q 016629 113 SEVATRG 119 (386)
Q Consensus 113 ~~a~~~~ 119 (386)
.+.+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 8876654
No 49
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.18 E-value=1.2e-10 Score=84.10 Aligned_cols=56 Identities=36% Similarity=0.685 Sum_probs=50.9
Q ss_pred HHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 56 VRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 56 L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
|..+|++||.|..|.+.... +++|||+|.+.++|..|+..|||..++|++|.|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999997753 579999999999999999999999999999999986
No 50
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=3.5e-11 Score=114.81 Aligned_cols=75 Identities=32% Similarity=0.681 Sum_probs=72.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
-++||||.+.+.+.++.|+..|..||+|++|.+..|+.| +.+|||||+|+-++.|+-|++.|||..++|+.|+|.
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 579999999999999999999999999999999999999 999999999999999999999999999999999985
No 51
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.13 E-value=5.3e-11 Score=115.92 Aligned_cols=84 Identities=27% Similarity=0.488 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCce-ecc--EEEEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT-IDG--RVVRVS 113 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~-i~G--r~L~V~ 113 (386)
....+||||-|+..+||.+++++|++||.|.+|.|.++..+.++|||||.|.+.+-|..||+.|||.. +.| .+|.|.
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 45789999999999999999999999999999999999999999999999999999999999999985 444 589999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
||.+...
T Consensus 202 FADtqkd 208 (510)
T KOG0144|consen 202 FADTQKD 208 (510)
T ss_pred ecccCCC
Confidence 9987644
No 52
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.10 E-value=8.6e-10 Score=110.20 Aligned_cols=80 Identities=28% Similarity=0.500 Sum_probs=68.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCC-CCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR-STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~-~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
...+|||.|||++++..+|+++|..||.|+...|..-. .++..+||||+|.+..+++.||.+ +-..|+|++|.|+...
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecc
Confidence 34569999999999999999999999999988775543 344459999999999999999996 6888999999998766
Q ss_pred cc
Q 016629 117 TR 118 (386)
Q Consensus 117 ~~ 118 (386)
+.
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 53
No 53
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=2e-10 Score=106.97 Aligned_cols=97 Identities=29% Similarity=0.493 Sum_probs=82.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
..++|+||||.+.++..+|+..|++||+|..|.|+++ |+||.|.-.++|..|+..|++..|.|++++|.++++
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~sts 149 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTS 149 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccceeeeeeecc
Confidence 5789999999999999999999999999999999887 999999999999999999999999999999999988
Q ss_pred cCcCCCCCCC------CCCCCCCcCCCCCC
Q 016629 118 RGRKSNSGRD------QFRHGHRHKGRDRD 141 (386)
Q Consensus 118 ~~~~~~~~~~------~~r~~~~~r~r~r~ 141 (386)
+-+...+..+ .++.|.|+......
T Consensus 150 rlrtapgmgDq~~cyrcGkeghwskEcP~~ 179 (346)
T KOG0109|consen 150 RLRTAPGMGDQSGCYRCGKEGHWSKECPVD 179 (346)
T ss_pred ccccCCCCCCHHHheeccccccccccCCcc
Confidence 7554333221 13567777665543
No 54
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.10 E-value=1.5e-10 Score=107.72 Aligned_cols=72 Identities=33% Similarity=0.703 Sum_probs=69.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeeccc
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~ 118 (386)
..|||||||.++++.+|+.+|++||+|..|.|+++ ||||-.++...|..||..|+|..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999987 9999999999999999999999999999999988776
No 55
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.06 E-value=2.1e-10 Score=114.91 Aligned_cols=79 Identities=37% Similarity=0.709 Sum_probs=73.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecccC
Q 016629 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (386)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~~ 119 (386)
.||||||.+++++++|..+|+.||.|..|.+..+..+ .++|||||+|.+.++|..|+..|||..|.|+.|+|......-
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 3999999999999999999999999999999999855 899999999999999999999999999999999998776543
No 56
>smart00361 RRM_1 RNA recognition motif.
Probab=99.06 E-value=6.3e-10 Score=84.36 Aligned_cols=60 Identities=30% Similarity=0.547 Sum_probs=52.4
Q ss_pred HHHHHHHhh----cCCCeEEEE-EeeCC-C--CCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 53 EDSVRKVFD----KYGSVVAVK-IVNDR-S--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 53 e~~L~~~F~----~~G~I~~v~-i~~~~-~--~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
+++|.++|. +||.|..|. |+.++ . ++++|||||+|.+.++|..|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567888888 999999995 55544 3 468999999999999999999999999999999986
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.06 E-value=5.6e-10 Score=111.57 Aligned_cols=85 Identities=32% Similarity=0.582 Sum_probs=76.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhc-----CC-ceec
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM-----NG-RTID 106 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l-----~g-~~i~ 106 (386)
.....+.+|||.|||+++|+++|..+|++||+|..+.|+.++.| +++|.|||.|.+..+|+.||... .| ..|.
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 34556799999999999999999999999999999999999999 99999999999999999999865 34 6789
Q ss_pred cEEEEEEeeccc
Q 016629 107 GRVVRVSEVATR 118 (386)
Q Consensus 107 Gr~L~V~~a~~~ 118 (386)
|+.|.|..|-++
T Consensus 367 GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 367 GRLLKVTLAVTR 378 (678)
T ss_pred ccEEeeeeccch
Confidence 999999887544
No 58
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.02 E-value=4.8e-10 Score=109.34 Aligned_cols=84 Identities=27% Similarity=0.514 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCcee-c--cEEEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI-D--GRVVRV 112 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i-~--Gr~L~V 112 (386)
...-+||||.+|..++|.+|+.+|++||.|.+|.|++|+.+ .++|||||.|.+.++|.+|+.+|+.... - ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 44568999999999999999999999999999999999999 8999999999999999999999987754 3 368899
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.+|.....
T Consensus 112 k~Ad~E~e 119 (510)
T KOG0144|consen 112 KYADGERE 119 (510)
T ss_pred cccchhhh
Confidence 88866543
No 59
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=5.5e-10 Score=109.36 Aligned_cols=79 Identities=32% Similarity=0.583 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
.+..-..|||.||+.++|++.|+.+|..||.|..|+.+.| ||||.|.+.++|.+|++.|||+.|.|..|.|.+
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtL 327 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTL 327 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEe
Confidence 4445678999999999999999999999999999998877 999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
|++...
T Consensus 328 AKP~~k 333 (506)
T KOG0117|consen 328 AKPVDK 333 (506)
T ss_pred cCChhh
Confidence 987543
No 60
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.96 E-value=2.6e-09 Score=110.85 Aligned_cols=73 Identities=22% Similarity=0.412 Sum_probs=61.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcC------------CCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCc
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKY------------GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~------------G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~ 103 (386)
.....+|||||||+.+|+++|.++|..| +.|..+.+. ..+|||||+|.+.++|..||. |+|.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~-----~~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN-----KEKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC-----CCCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 4456899999999999999999999875 344444443 357899999999999999995 9999
Q ss_pred eeccEEEEEEe
Q 016629 104 TIDGRVVRVSE 114 (386)
Q Consensus 104 ~i~Gr~L~V~~ 114 (386)
.|.|..|.|..
T Consensus 246 ~~~g~~l~v~r 256 (509)
T TIGR01642 246 IYSNVFLKIRR 256 (509)
T ss_pred EeeCceeEecC
Confidence 99999999853
No 61
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.93 E-value=1.5e-09 Score=95.02 Aligned_cols=87 Identities=26% Similarity=0.480 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEE-EEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV-KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
+.+.+..|||+||.+.+++..|.+.|+.||.|... .|+.+..| .++|||||.|++.+.+.+|+..|+|..+..++|+|
T Consensus 92 nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv 171 (203)
T KOG0131|consen 92 NLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITV 171 (203)
T ss_pred cccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEE
Confidence 34556899999999999999999999999988764 78888887 89999999999999999999999999999999999
Q ss_pred EeecccCcC
Q 016629 113 SEVATRGRK 121 (386)
Q Consensus 113 ~~a~~~~~~ 121 (386)
.++.....+
T Consensus 172 ~ya~k~~~k 180 (203)
T KOG0131|consen 172 SYAFKKDTK 180 (203)
T ss_pred EEEEecCCC
Confidence 999876543
No 62
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.91 E-value=1.1e-08 Score=99.99 Aligned_cols=79 Identities=24% Similarity=0.470 Sum_probs=73.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHh-hcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVF-DKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F-~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
...+||.|||+++.|.+|+++| ++-|+|..|.+..|..++++|||.|+|.+++.+++|++.||.+.+.|++|.|.....
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 4569999999999999999999 457999999999999999999999999999999999999999999999999986654
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=4.2e-09 Score=104.66 Aligned_cols=80 Identities=28% Similarity=0.514 Sum_probs=73.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeeccc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~ 118 (386)
...|||.||++.++...|.++|+.||.|.+|++..+..+ ++|| ||+|+++++|..||..|||..+.|++|.|......
T Consensus 76 ~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 76 PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 344999999999999999999999999999999999888 8999 99999999999999999999999999999877655
Q ss_pred Cc
Q 016629 119 GR 120 (386)
Q Consensus 119 ~~ 120 (386)
..
T Consensus 154 ~e 155 (369)
T KOG0123|consen 154 EE 155 (369)
T ss_pred hh
Confidence 43
No 64
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.89 E-value=4.4e-09 Score=95.28 Aligned_cols=85 Identities=16% Similarity=0.460 Sum_probs=74.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHH----HhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRK----VFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV 109 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~----~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~ 109 (386)
+.+++..||||-||+..+..++|.. +|++||.|..|.+.. ..+.+|-|||.|.+.+.|-.|+..|+|..+.|++
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 3455666999999999999999877 999999999887754 2378999999999999999999999999999999
Q ss_pred EEEEeecccCc
Q 016629 110 VRVSEVATRGR 120 (386)
Q Consensus 110 L~V~~a~~~~~ 120 (386)
++|.||.....
T Consensus 82 mriqyA~s~sd 92 (221)
T KOG4206|consen 82 MRIQYAKSDSD 92 (221)
T ss_pred hheecccCccc
Confidence 99999987654
No 65
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.84 E-value=5.6e-09 Score=108.24 Aligned_cols=79 Identities=16% Similarity=0.494 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeeccc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~ 118 (386)
.+|||||+|+.++++.+|..+|+.||.|.+|.++. ++|||||.+....+|..|+.+|....+.++.|+|.|+...
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 47999999999999999999999999999999987 5789999999999999999999999999999999999776
Q ss_pred CcCC
Q 016629 119 GRKS 122 (386)
Q Consensus 119 ~~~~ 122 (386)
+...
T Consensus 496 G~ks 499 (894)
T KOG0132|consen 496 GPKS 499 (894)
T ss_pred Ccch
Confidence 5543
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.83 E-value=1e-08 Score=105.67 Aligned_cols=78 Identities=24% Similarity=0.555 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC----CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~----~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
.++|||.||++.+|.++|...|..+|.|..|.|...+.. .+.|||||+|.+.++|+.|+..|+|+.|+|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 345999999999999999999999999999998877654 2459999999999999999999999999999999999
Q ss_pred ec
Q 016629 115 VA 116 (386)
Q Consensus 115 a~ 116 (386)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 87
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.80 E-value=1.5e-08 Score=90.53 Aligned_cols=84 Identities=23% Similarity=0.368 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcC-CCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKY-GSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~-G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
......-+||..+|..+.+..+..+|.+| |.|..+.+.+++.| .++|||||+|++++.|.-|.+.||+..|+|+-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34556789999999999999999999998 77888888888877 89999999999999999999999999999999999
Q ss_pred Eeeccc
Q 016629 113 SEVATR 118 (386)
Q Consensus 113 ~~a~~~ 118 (386)
.+-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 888766
No 68
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=1.4e-08 Score=97.31 Aligned_cols=81 Identities=26% Similarity=0.502 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
...++|||..+.+++++++|+.+|+.||+|+.|.+...+.+ ..+|||||+|.+..+...||..||-+.++|.-|+|-.+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 34689999999999999999999999999999999999988 78999999999999999999999999999999999765
Q ss_pred cc
Q 016629 116 AT 117 (386)
Q Consensus 116 ~~ 117 (386)
-.
T Consensus 288 vT 289 (544)
T KOG0124|consen 288 VT 289 (544)
T ss_pred cC
Confidence 43
No 69
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=1.2e-08 Score=97.39 Aligned_cols=74 Identities=27% Similarity=0.443 Sum_probs=66.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhc-CCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l-~g~~i~Gr~L~V~~a~~ 117 (386)
-.+||||+|...+++.+|.++|.+||+|..|.+... +++|||+|.+..+|+.|...+ +...|+|.+|.|.|..+
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 469999999999999999999999999999998774 569999999999999887654 55678999999999887
No 70
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=1.8e-08 Score=100.22 Aligned_cols=76 Identities=26% Similarity=0.459 Sum_probs=71.5
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecccC
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~~ 119 (386)
..|||| +++|+..|.++|+.+|+|..|+|+.+. | +-|||||.|.++.+|+.||..||...+.|++|+|-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 468998 899999999999999999999999999 8 99999999999999999999999999999999999987654
Q ss_pred c
Q 016629 120 R 120 (386)
Q Consensus 120 ~ 120 (386)
.
T Consensus 77 ~ 77 (369)
T KOG0123|consen 77 S 77 (369)
T ss_pred c
Confidence 4
No 71
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=1.4e-08 Score=92.58 Aligned_cols=74 Identities=36% Similarity=0.737 Sum_probs=68.0
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecccC
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~~ 119 (386)
..+|||+||+.+.+.+|+.+|..||.|..|.|.. ||+||+|.+..+|..|+..|+|..|.|-.+.|+++....
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-------gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-------GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-------ccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 3689999999999999999999999999998855 699999999999999999999999999999999988654
Q ss_pred c
Q 016629 120 R 120 (386)
Q Consensus 120 ~ 120 (386)
.
T Consensus 75 ~ 75 (216)
T KOG0106|consen 75 R 75 (216)
T ss_pred c
Confidence 4
No 72
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.70 E-value=2e-08 Score=97.00 Aligned_cols=82 Identities=30% Similarity=0.663 Sum_probs=74.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
..++||||+|+|.++++.|.+.|.+||+|..|.++.++.+ .++||+||+|++.+....++.. .-+.|.|+.|.+..|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 6789999999999999999999999999999999999998 8999999999999999998884 6678999999998887
Q ss_pred ccCc
Q 016629 117 TRGR 120 (386)
Q Consensus 117 ~~~~ 120 (386)
++..
T Consensus 84 ~r~~ 87 (311)
T KOG4205|consen 84 SRED 87 (311)
T ss_pred Cccc
Confidence 6543
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.66 E-value=3.1e-08 Score=91.45 Aligned_cols=83 Identities=27% Similarity=0.449 Sum_probs=75.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec-c--EEEEEEe
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-G--RVVRVSE 114 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~-G--r~L~V~~ 114 (386)
+..+||||-|...-.|++++.+|..||.|.+|.+....++.+||||||.|.+..+|+.||..|+|.... | ..|.|+|
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 578999999999999999999999999999999999999999999999999999999999999998543 3 5789999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.....
T Consensus 98 ADTdkE 103 (371)
T KOG0146|consen 98 ADTDKE 103 (371)
T ss_pred ccchHH
Confidence 876543
No 74
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.62 E-value=1.2e-07 Score=90.61 Aligned_cols=84 Identities=25% Similarity=0.342 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEE--------EEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceecc
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--------VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G 107 (386)
....+.|||.|||.++|.+++.++|++||-|.. |+|..+..++.+|=|.+.|-..+++.-|+..|++..|.|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 344678999999999999999999999998754 889999889999999999999999999999999999999
Q ss_pred EEEEEEeecccC
Q 016629 108 RVVRVSEVATRG 119 (386)
Q Consensus 108 r~L~V~~a~~~~ 119 (386)
..|+|+.|.-..
T Consensus 211 ~~~rVerAkfq~ 222 (382)
T KOG1548|consen 211 KKLRVERAKFQM 222 (382)
T ss_pred cEEEEehhhhhh
Confidence 999999886543
No 75
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.60 E-value=2.2e-07 Score=86.61 Aligned_cols=82 Identities=22% Similarity=0.388 Sum_probs=76.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+...+||||+.+.+|.+++..+|..||.|..+.|..++.. +++|||||+|.+.+.+..|+. |+|..|.|+.|.|.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 445789999999999999999999999999999999999888 899999999999999999999 999999999999988
Q ss_pred eccc
Q 016629 115 VATR 118 (386)
Q Consensus 115 a~~~ 118 (386)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7655
No 76
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.58 E-value=1.6e-07 Score=87.53 Aligned_cols=84 Identities=24% Similarity=0.453 Sum_probs=77.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
....++|+|.|||+.|+..+|+++|..||.+..+-|..++.+.+.|.|-|.|...++|..|+..|+|..++|+++.+...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 33458999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccC
Q 016629 116 ATRG 119 (386)
Q Consensus 116 ~~~~ 119 (386)
.+..
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6543
No 77
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=2.7e-08 Score=89.58 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
.+...+|||+||...++++.|.++|-+.|+|..|.|..+..+..+ ||||.|.++.+..-|++.|||..+.+..|.|.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 345789999999999999999999999999999999998888777 9999999999999999999999999999988765
Q ss_pred c
Q 016629 116 A 116 (386)
Q Consensus 116 ~ 116 (386)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 4
No 78
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.56 E-value=4.7e-08 Score=100.84 Aligned_cols=80 Identities=24% Similarity=0.505 Sum_probs=74.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
.+.|+|.|||+.++..+++.+|..||.|..|.|+..... ..+|||||+|-++.+|..|+.+|.++-+.|+.|.++||..
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhcc
Confidence 679999999999999999999999999999999887333 5699999999999999999999999999999999999976
Q ss_pred c
Q 016629 118 R 118 (386)
Q Consensus 118 ~ 118 (386)
.
T Consensus 693 d 693 (725)
T KOG0110|consen 693 D 693 (725)
T ss_pred c
Confidence 5
No 79
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.52 E-value=1.7e-07 Score=90.57 Aligned_cols=81 Identities=28% Similarity=0.546 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
...||||+||+++++.+++++|.+||.|..+.++.+..+ ..+||+||+|..++++..++. ..-+.|+|+.+.|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 459999999999999999999999999999999999888 899999999999999999988 588899999999999877
Q ss_pred cCc
Q 016629 118 RGR 120 (386)
Q Consensus 118 ~~~ 120 (386)
+..
T Consensus 176 k~~ 178 (311)
T KOG4205|consen 176 KEV 178 (311)
T ss_pred hhh
Confidence 644
No 80
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.51 E-value=1.9e-07 Score=91.55 Aligned_cols=80 Identities=25% Similarity=0.400 Sum_probs=69.8
Q ss_pred cCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
+.......++|||.|||+++||+.|++-|..||.|..+.|+.. ++.+| .|.|.++++|+.|+..|+|..+.|+.|.
T Consensus 529 a~gaarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~--GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 529 AVGAARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN--GKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred cccccccccEEEEecCCccccHHHHHHHHHhccceehhhhhcc--CCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 3445667899999999999999999999999999999988543 33444 8999999999999999999999999999
Q ss_pred EEee
Q 016629 112 VSEV 115 (386)
Q Consensus 112 V~~a 115 (386)
|.++
T Consensus 605 V~y~ 608 (608)
T KOG4212|consen 605 VTYF 608 (608)
T ss_pred eeeC
Confidence 9863
No 81
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.51 E-value=2.1e-07 Score=85.89 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=81.0
Q ss_pred CCCCCCCCcccccccCCcchhhhhhhhhhhcCCCCCCCCeEEEcCCCCCC-------cHHHHHHHhh-cCCCeEEEEEee
Q 016629 2 VCREGGRQGVSTSIVVPIKARVIFNLIEERVKMTIDDESSVYVGGLPYSA-------NEDSVRKVFD-KYGSVVAVKIVN 73 (386)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lfVgnLp~~~-------te~~L~~~F~-~~G~I~~v~i~~ 73 (386)
+|+++++|+..+..+.-.+..++.++...+......... -+..++..- .-++|...|. +||+|..+.|..
T Consensus 26 acR~gdrcsR~h~kpt~s~t~ll~nmyq~P~~~~~~~d~--~~~~~~de~~q~~~defyEd~f~E~~~kygEiee~~Vc~ 103 (260)
T KOG2202|consen 26 ACRHGDRCSRLHEKPTFSQTVLLKNMYQNPENSWERRDA--QGQFLTDEELQRHEDEFYEDVFTELEDKYGEIEELNVCD 103 (260)
T ss_pred ccccccHHHHhhcccccchHHHHHHHHhCCCCCchhhhh--ccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Confidence 699999999999987777777777644443221110000 111111111 1133444445 899999998888
Q ss_pred CCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 74 DRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 74 ~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
+...+..|.+||.|...++|++|+..||+..|.|++|..++..
T Consensus 104 Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 104 NLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred ccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 7666999999999999999999999999999999999998764
No 82
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.50 E-value=6e-07 Score=81.19 Aligned_cols=84 Identities=19% Similarity=0.381 Sum_probs=69.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeC-CCC-CCceEEEEEeCChhhHHHHHHhcCCceec---cEEEEE
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RST-RGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVRV 112 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~---Gr~L~V 112 (386)
.-+||||.+||.++-..+|..+|..|-.-..+.|-.. +.+ -.+.+|||+|.+..+|.+|++.|||..|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3579999999999999999999999866665555332 222 35689999999999999999999999997 789999
Q ss_pred EeecccCcC
Q 016629 113 SEVATRGRK 121 (386)
Q Consensus 113 ~~a~~~~~~ 121 (386)
++|++..+.
T Consensus 113 ElAKSNtK~ 121 (284)
T KOG1457|consen 113 ELAKSNTKR 121 (284)
T ss_pred eehhcCccc
Confidence 999887654
No 83
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.43 E-value=4.9e-07 Score=93.27 Aligned_cols=81 Identities=26% Similarity=0.454 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC----CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~----~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
+..+.||||||++.++++.|...|+.||+|..|+|+..+.- ....||||-|-+..+|+.|+..|+|..+.+..+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 34689999999999999999999999999999999886653 35679999999999999999999999999999999
Q ss_pred Eeecc
Q 016629 113 SEVAT 117 (386)
Q Consensus 113 ~~a~~ 117 (386)
.|.+.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 98854
No 84
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.40 E-value=8.9e-08 Score=92.64 Aligned_cols=73 Identities=16% Similarity=0.137 Sum_probs=56.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
.+++|++|+..+...++...|..+|+|...++.... ...+|.|+|....+...|+. ++|..+.-....+....
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr-~~gre~k~qhsr~ai~k 224 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALR-SHGRERKRQHSRRAIIK 224 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHH-hcchhhhhhhhhhhhcC
Confidence 679999999999999999999999999887764432 23477799999888888988 57887764444444333
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=3.2e-07 Score=92.63 Aligned_cols=72 Identities=25% Similarity=0.455 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
.....+|+|-|||..|++++|..+|+.||+|..|..... ..|.+||+|-+..+|+.|+++|++..|.|+.|.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 445689999999999999999999999999999776554 567999999999999999999999999999888
No 86
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.16 E-value=1.2e-05 Score=78.65 Aligned_cols=76 Identities=21% Similarity=0.357 Sum_probs=68.8
Q ss_pred CCeEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
...|.|.||... +|.+.|..+|+-||.|..|+|..++. -.|.|.|.+...|+-|+..|+|+.+.|++|+|.+++-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 578899999765 89999999999999999999998754 4899999999999999999999999999999998764
Q ss_pred c
Q 016629 118 R 118 (386)
Q Consensus 118 ~ 118 (386)
.
T Consensus 373 ~ 373 (492)
T KOG1190|consen 373 T 373 (492)
T ss_pred c
Confidence 3
No 87
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=3.8e-06 Score=76.83 Aligned_cols=70 Identities=21% Similarity=0.412 Sum_probs=62.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....+.++|.+++..+.|.+|.++|+++|.+....+ ..++|||+|.+.++|..|+..|+|..+.|+.|.+
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCceeee
Confidence 344789999999999999999999999999955544 3459999999999999999999999999999999
No 88
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.12 E-value=2.4e-06 Score=78.78 Aligned_cols=78 Identities=31% Similarity=0.657 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
...+||.|.|..+++.+.|...|.+|-.....+++++.-+ +++||+||.|.+..++..|+..|+|..++.++|...-.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 4689999999999999999999999998888999999888 99999999999999999999999999999999887544
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.10 E-value=1.1e-05 Score=77.94 Aligned_cols=85 Identities=27% Similarity=0.396 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEE--------EEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceec
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--------VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~ 106 (386)
.....+|||-+||..+++.+|.++|.+||.|.. |+|..++.| .++|-|.|.|.+...|++||..++++.|.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 556779999999999999999999999998743 778888888 89999999999999999999999999999
Q ss_pred cEEEEEEeecccCc
Q 016629 107 GRVVRVSEVATRGR 120 (386)
Q Consensus 107 Gr~L~V~~a~~~~~ 120 (386)
|..|+|.+|.....
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999998876553
No 90
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.03 E-value=3.7e-05 Score=61.92 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=68.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhc--CCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceec----cEEEEE
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDK--YGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID----GRVVRV 112 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~--~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~----Gr~L~V 112 (386)
+||-|.|||...|.++|.+++.. .|....+.++.|..+ -+.|||||.|.+++.|......++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999888755 478888899988877 68999999999999999999999999875 567788
Q ss_pred Eeeccc
Q 016629 113 SEVATR 118 (386)
Q Consensus 113 ~~a~~~ 118 (386)
.+|.-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887643
No 91
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.00 E-value=1.6e-05 Score=77.32 Aligned_cols=74 Identities=16% Similarity=0.243 Sum_probs=60.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC----CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~----~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...|.|.||.+.+|.+++..+|...|+|..+.|+.+... ...-.|||.|.+...+..|.. |.++.|-++-|.|-
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 448999999999999999999999999999998875443 244589999999999998877 66666666666553
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.99 E-value=7.7e-06 Score=83.26 Aligned_cols=85 Identities=27% Similarity=0.560 Sum_probs=78.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
......+||++||..+++..+.++...||.+....++.+..+ .++||||.+|.+......|+..|||..+++++|.|..
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 455789999999999999999999999999999999999886 8999999999999999999999999999999999988
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
|.....
T Consensus 366 A~~g~~ 371 (500)
T KOG0120|consen 366 AIVGAS 371 (500)
T ss_pred hhccch
Confidence 865443
No 93
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.95 E-value=2.8e-05 Score=60.23 Aligned_cols=69 Identities=29% Similarity=0.403 Sum_probs=48.1
Q ss_pred CeEEEcCCCCCCcHHH----HHHHhhcCC-CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 40 SSVYVGGLPYSANEDS----VRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~----L~~~F~~~G-~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
+.|||.|||.+.+... |..++..|| .|..| ..+.|+|-|.+.+.|..|.+.|+|..+.|.+|.|.|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~ 73 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSF 73 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEES
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEE
Confidence 4789999999988765 567777886 45444 236999999999999999999999999999999998
Q ss_pred ecc
Q 016629 115 VAT 117 (386)
Q Consensus 115 a~~ 117 (386)
...
T Consensus 74 ~~~ 76 (90)
T PF11608_consen 74 SPK 76 (90)
T ss_dssp S--
T ss_pred cCC
Confidence 743
No 94
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.79 E-value=2.5e-05 Score=75.13 Aligned_cols=84 Identities=27% Similarity=0.515 Sum_probs=74.5
Q ss_pred CCCCCeEE-EcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 36 IDDESSVY-VGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 36 ~~~~~~lf-VgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
..+..++| |++|++.++.++|..+|..+|.|..+.+..+..+ ..+|||||.|.....+..|+.. +...+.++++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34455666 9999999999999999999999999999998888 8999999999999999999987 8889999999998
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
+..+.+.
T Consensus 260 ~~~~~~~ 266 (285)
T KOG4210|consen 260 EDEPRPK 266 (285)
T ss_pred cCCCCcc
Confidence 8776544
No 95
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.75 E-value=8.9e-05 Score=74.26 Aligned_cols=77 Identities=21% Similarity=0.352 Sum_probs=63.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
.....-|-+.+|||++|+++|.+||+.|+ |..+.+.+. .++..|-|||+|.++++++.|++. +-..++.+-|.|-.+
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTA 83 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEcc
Confidence 44556777789999999999999999996 777666553 347889999999999999999994 777778888888655
No 96
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00016 Score=73.40 Aligned_cols=91 Identities=29% Similarity=0.403 Sum_probs=73.8
Q ss_pred hhhhhhhhhcCCCCCCCCeEEEcCCCCCCcH------HHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHH
Q 016629 23 VIFNLIEERVKMTIDDESSVYVGGLPYSANE------DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDA 96 (386)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~lfVgnLp~~~te------~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~A 96 (386)
++..+....+.....-...|+|.|+|---.. .-|..+|+++|+|+.+.++.+..+..+||.|++|++..+|+.|
T Consensus 42 l~~Dll~k~p~~~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~a 121 (698)
T KOG2314|consen 42 LVGDLLEKRPVTAEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKA 121 (698)
T ss_pred hhhHHHhhCcCccCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHH
Confidence 4455556666666667789999999865332 2356789999999999999888888999999999999999999
Q ss_pred HHhcCCceec-cEEEEEE
Q 016629 97 INDMNGRTID-GRVVRVS 113 (386)
Q Consensus 97 i~~l~g~~i~-Gr~L~V~ 113 (386)
++.|||+.|+ .....|.
T Consensus 122 VK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 122 VKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred HHhcccceecccceEEee
Confidence 9999999986 5566664
No 97
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.64 E-value=4.8e-05 Score=69.05 Aligned_cols=66 Identities=24% Similarity=0.466 Sum_probs=55.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~ 106 (386)
-..+|||.||.+++++++|+.+|+.|-....++|-. +. .-+.|||+|.+.+.|..|+..|+|..|.
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~--g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RG--GMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CC--CcceEeecHHHHHHHHHHHHHhhcceec
Confidence 357999999999999999999999998776666632 22 3468999999999999999999887653
No 98
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.63 E-value=0.00017 Score=65.70 Aligned_cols=77 Identities=13% Similarity=0.331 Sum_probs=68.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec-cEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~-Gr~L~V~~ 114 (386)
.++...||+.|||..++.+.|..+|.+|.....|.++.. -.+.|||+|.+...|..|...+.|..|- ...+.|.+
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~ 218 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITF 218 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceeccCceEEecc
Confidence 567789999999999999999999999999999998876 3469999999999999999999999887 77777776
Q ss_pred ec
Q 016629 115 VA 116 (386)
Q Consensus 115 a~ 116 (386)
+.
T Consensus 219 a~ 220 (221)
T KOG4206|consen 219 AK 220 (221)
T ss_pred cC
Confidence 54
No 99
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.63 E-value=0.0006 Score=60.41 Aligned_cols=63 Identities=21% Similarity=0.315 Sum_probs=57.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~ 106 (386)
....|.|.+||+..+|++|++++.+.|.|+...+..+ |++.|+|...++++-|+..|+...+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceeeeeeehhhHHHHHHhhcccccc
Confidence 3578999999999999999999999999999999887 69999999999999999999887764
No 100
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.61 E-value=2.3e-05 Score=79.25 Aligned_cols=79 Identities=27% Similarity=0.395 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
...++|+-.|+-.++..+|.+||+.+|+|..|.|+.+..+ .++|.|||+|.+.+....||. |.|..+.|-+|.|....
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLSE 256 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecccH
Confidence 4578999999999999999999999999999999999988 899999999999999999996 89999999999997664
Q ss_pred c
Q 016629 117 T 117 (386)
Q Consensus 117 ~ 117 (386)
.
T Consensus 257 a 257 (549)
T KOG0147|consen 257 A 257 (549)
T ss_pred H
Confidence 3
No 101
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.59 E-value=9.8e-05 Score=60.51 Aligned_cols=70 Identities=21% Similarity=0.460 Sum_probs=43.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCc-----eeccEEEEEEe
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR-----TIDGRVVRVSE 114 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~-----~i~Gr~L~V~~ 114 (386)
+.|+|.+++..++.++|..+|..||.|..|.+.... ..|||-|.+++.|+.|+..+.-. .|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~-----~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD-----TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC-----CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 578899999999999999999999999999886642 38999999999999999876433 45565555543
No 102
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.58 E-value=0.00014 Score=74.35 Aligned_cols=63 Identities=27% Similarity=0.410 Sum_probs=52.9
Q ss_pred HHHHHhhcCCCeEEEEEeeC-CCC---CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 55 SVRKVFDKYGSVVAVKIVND-RST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 55 ~L~~~F~~~G~I~~v~i~~~-~~~---~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
+++..+.+||.|..|.|+.. ... -..|..||+|++.++|+.|+++|+|..|.|+.|...|...
T Consensus 425 dvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 425 DVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 34555788999999999887 332 3567899999999999999999999999999998887654
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.55 E-value=0.00017 Score=69.15 Aligned_cols=80 Identities=23% Similarity=0.492 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCcHHH----H--HHHhhcCCCeEEEEEeeCCCC-C-Cce-E-EEEEeCChhhHHHHHHhcCCceecc
Q 016629 38 DESSVYVGGLPYSANEDS----V--RKVFDKYGSVVAVKIVNDRST-R-GKC-Y-GFVTFGNPRSAVDAINDMNGRTIDG 107 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~----L--~~~F~~~G~I~~v~i~~~~~~-~-~kG-~-aFVeF~~~~~A~~Ai~~l~g~~i~G 107 (386)
...-+||-+||+.+-.++ | .++|++||.|..|.|.+.-.. . .-+ + .||+|.+.++|..||...+|..++|
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccC
Confidence 456789999999876655 3 589999999999887654322 1 122 3 3999999999999999999999999
Q ss_pred EEEEEEeecc
Q 016629 108 RVVRVSEVAT 117 (386)
Q Consensus 108 r~L~V~~a~~ 117 (386)
+.|+..+-..
T Consensus 193 r~lkatYGTT 202 (480)
T COG5175 193 RVLKATYGTT 202 (480)
T ss_pred ceEeeecCch
Confidence 9999987643
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.40 E-value=0.00045 Score=69.33 Aligned_cols=78 Identities=24% Similarity=0.356 Sum_probs=65.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEE-EEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
.....|-+.+||+.||+++|.+||+-.-.|.. |.++.++.+++.|-|||.|++.+.|+.|+.. |...|+-+-|.|-.+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 34668888999999999999999998765555 5577777778999999999999999999985 777888888888544
No 105
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.28 E-value=0.00032 Score=74.75 Aligned_cols=81 Identities=23% Similarity=0.483 Sum_probs=71.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceecc--EEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRV 112 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G--r~L~V 112 (386)
.+.+.+.+|||+|++++....|..+|..||.|..|.+-. ...||||.|++...|+.|+..|-|..|+| +.|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 456688999999999999999999999999999887744 34599999999999999999999999986 67999
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.||.....
T Consensus 526 dla~~~~~ 533 (975)
T KOG0112|consen 526 DLASPPGA 533 (975)
T ss_pred ccccCCCC
Confidence 99876544
No 106
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.28 E-value=0.00061 Score=48.63 Aligned_cols=52 Identities=19% Similarity=0.448 Sum_probs=42.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHH
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAI 97 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai 97 (386)
+.|-|.|+++...+. +..+|..||+|..+.+.. ...+.||.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 567889999877754 555899999999988862 2349999999999999985
No 107
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.17 E-value=0.001 Score=67.29 Aligned_cols=68 Identities=31% Similarity=0.485 Sum_probs=61.5
Q ss_pred cCCCCCCCCeEEEcCCCCCCcHHHHHHHhh-cCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHh
Q 016629 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFD-KYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIND 99 (386)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~ 99 (386)
.+...++..|||||+||.-++..+|..+|. -||.|..+-|-.|+.- .++|-|=|+|.+..+..+||.+
T Consensus 363 ~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 363 HNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 566788999999999999999999999998 6999999999888554 7999999999999999999874
No 108
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.05 E-value=0.0028 Score=51.37 Aligned_cols=76 Identities=29% Similarity=0.445 Sum_probs=51.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEE-Eee-------CCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEE-
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVK-IVN-------DRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV- 109 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~-i~~-------~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~- 109 (386)
.+.|.|-|+|+..+ ..+..+|++||.|.... +.. .+......+..|.|.++.+|..||.. ||..|+|..
T Consensus 6 ~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCEE
T ss_pred CeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcEE
Confidence 56788889998854 56778899999998764 100 01112445899999999999999995 999998854
Q ss_pred EEEEeec
Q 016629 110 VRVSEVA 116 (386)
Q Consensus 110 L~V~~a~ 116 (386)
+-|.+..
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 4466653
No 109
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.02 E-value=0.00034 Score=64.88 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=60.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC---------CCce----EEEEEeCChhhHHHHHHhcCCce
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---------RGKC----YGFVTFGNPRSAVDAINDMNGRT 104 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~---------~~kG----~aFVeF~~~~~A~~Ai~~l~g~~ 104 (386)
....||+++||+.+...-|+.+|+.||.|-.|.+.....+ ..++ -|.|+|.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999988765432 1222 26799999999999999999999
Q ss_pred eccEE
Q 016629 105 IDGRV 109 (386)
Q Consensus 105 i~Gr~ 109 (386)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99874
No 110
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.93 E-value=0.0028 Score=61.22 Aligned_cols=77 Identities=23% Similarity=0.330 Sum_probs=60.8
Q ss_pred CCCCeEEEcCCCC----CCc-------HHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCcee
Q 016629 37 DDESSVYVGGLPY----SAN-------EDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (386)
Q Consensus 37 ~~~~~lfVgnLp~----~~t-------e~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i 105 (386)
...++|.|.|+=. ..+ .++|..-..+||.|..|.|.-. ++.|.+-|.|.+.++|..+|..|+|..|
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 3467888888621 223 2455666899999999988532 4778999999999999999999999999
Q ss_pred ccEEEEEEeec
Q 016629 106 DGRVVRVSEVA 116 (386)
Q Consensus 106 ~Gr~L~V~~a~ 116 (386)
+|+.|......
T Consensus 340 dgRql~A~i~D 350 (382)
T KOG1548|consen 340 DGRQLTASIWD 350 (382)
T ss_pred cceEEEEEEeC
Confidence 99999987654
No 111
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.92 E-value=0.022 Score=55.65 Aligned_cols=79 Identities=18% Similarity=0.247 Sum_probs=63.5
Q ss_pred CCCeEEEcCC--CCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec-c-EEEEEE
Q 016629 38 DESSVYVGGL--PYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-G-RVVRVS 113 (386)
Q Consensus 38 ~~~~lfVgnL--p~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~-G-r~L~V~ 113 (386)
+...|.+.=| -+.+|.+-|..+....|+|..|.|.+. .--.|.|+|++.+.|++|...|||..|. | -.|+|+
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk----ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK----NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec----cceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 3445555544 446899999999999999999988775 2347999999999999999999999885 3 478999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
||++..-
T Consensus 195 yAkP~rl 201 (494)
T KOG1456|consen 195 YAKPTRL 201 (494)
T ss_pred ecCccee
Confidence 9987643
No 112
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.89 E-value=0.001 Score=68.18 Aligned_cols=78 Identities=9% Similarity=0.121 Sum_probs=64.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhc-CCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCcee---ccEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDK-YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI---DGRVV 110 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i---~Gr~L 110 (386)
.....+.|||.||-.-+|.-.|+.++.+ +|.|..++|- +.+..|||.|.+.++|.+.+.+|||..+ +++.|
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD-----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD-----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHH-----HhhcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3456789999999999999999999995 5566666442 2456899999999999999999999976 57889
Q ss_pred EEEeecc
Q 016629 111 RVSEVAT 117 (386)
Q Consensus 111 ~V~~a~~ 117 (386)
.|.|+..
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9998854
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.0026 Score=64.36 Aligned_cols=63 Identities=29% Similarity=0.499 Sum_probs=49.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCC--CC--CCce---EEEEEeCChhhHHHHHHhc
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR--ST--RGKC---YGFVTFGNPRSAVDAINDM 100 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~--~~kG---~aFVeF~~~~~A~~Ai~~l 100 (386)
.-.+.||||+||++++++.|...|..||.+. |.++... .+ .++| |+|+.|+++.+.+.-+.+.
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 3467999999999999999999999999864 4444211 12 4667 9999999999888766654
No 114
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.83 E-value=0.0047 Score=53.17 Aligned_cols=74 Identities=28% Similarity=0.462 Sum_probs=52.3
Q ss_pred CCCCCeEEEcCCCC------CCcH---HHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec
Q 016629 36 IDDESSVYVGGLPY------SANE---DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (386)
Q Consensus 36 ~~~~~~lfVgnLp~------~~te---~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~ 106 (386)
.++..||.|.-+.+ ...+ .+|.+.|..||.|.-|+++.+ .-+|+|.+-..|.+|+. |+|..++
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals-~dg~~v~ 95 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALS-LDGIQVN 95 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHH-GCCSEET
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHc-cCCcEEC
Confidence 44556666654441 1222 367788999999998888764 67899999999999999 8999999
Q ss_pred cEEEEEEeecc
Q 016629 107 GRVVRVSEVAT 117 (386)
Q Consensus 107 Gr~L~V~~a~~ 117 (386)
|+.|.|....+
T Consensus 96 g~~l~i~LKtp 106 (146)
T PF08952_consen 96 GRTLKIRLKTP 106 (146)
T ss_dssp TEEEEEEE---
T ss_pred CEEEEEEeCCc
Confidence 99999987654
No 115
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.81 E-value=0.0089 Score=58.34 Aligned_cols=81 Identities=21% Similarity=0.241 Sum_probs=70.6
Q ss_pred CCCCCCCeEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 34 MTIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....+++.+.|-+|... +.-+.|..+|..||.|..|++++.+ .|.|.|++.+..+.+.|+..||+..+-|.+|.|
T Consensus 282 ~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 282 GGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 44567889999999886 4567789999999999999999874 469999999999999999999999999999999
Q ss_pred Eeeccc
Q 016629 113 SEVATR 118 (386)
Q Consensus 113 ~~a~~~ 118 (386)
.++...
T Consensus 358 ~~SkQ~ 363 (494)
T KOG1456|consen 358 CVSKQN 363 (494)
T ss_pred eecccc
Confidence 887654
No 116
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.77 E-value=0.0074 Score=63.06 Aligned_cols=76 Identities=18% Similarity=0.326 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeE-EEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
.+.|-+-|+|++++-+||.+||..|-.+- +|.+-.+..+...|-|.|-|++.++|..|...|++..|..+.|.+.+
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34778889999999999999999997654 45666666678999999999999999999999999999999988764
No 117
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.69 E-value=0.0017 Score=64.20 Aligned_cols=67 Identities=18% Similarity=0.277 Sum_probs=56.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeC---CCC---C--------CceEEEEEeCChhhHHHHHHhcCC
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND---RST---R--------GKCYGFVTFGNPRSAVDAINDMNG 102 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~---~~~---~--------~kG~aFVeF~~~~~A~~Ai~~l~g 102 (386)
-+..+|.+.|||.+-..+-|.++|+.||.|..|.|+.. +.. . .+-+|||+|...+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 36789999999999988999999999999999999876 221 1 245799999999999999997754
Q ss_pred c
Q 016629 103 R 103 (386)
Q Consensus 103 ~ 103 (386)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 118
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.64 E-value=0.0013 Score=63.40 Aligned_cols=75 Identities=19% Similarity=0.394 Sum_probs=62.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....+|||||-|.+|.++|.+.+...| .|..+++..++.+ +++|||+|...+....++.++.|-.+.|.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 456899999999999999998887776 4556667777666 89999999999999999999999999998875444
No 119
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.61 E-value=0.005 Score=60.71 Aligned_cols=79 Identities=15% Similarity=0.278 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccE-EEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr-~L~V~~ 114 (386)
.++..+|...|+|+.+++++|...|..-|..+....... +.+.+|++.+.+.++|..|+-.|+.+.+++. .|+|.|
T Consensus 411 ~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---CCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 366789999999999999999999999987755433222 2345999999999999999999999999865 899998
Q ss_pred ecc
Q 016629 115 VAT 117 (386)
Q Consensus 115 a~~ 117 (386)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 764
No 120
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.52 E-value=0.0072 Score=57.19 Aligned_cols=62 Identities=35% Similarity=0.453 Sum_probs=51.2
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCCC--CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 54 DSVRKVFDKYGSVVAVKIVNDRST--RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~~~~~--~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
+++...+.+||.|..|.|...+.. +--.-.||+|...++|.+|+-.|||..|+|+.+...|-
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fy 364 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFY 364 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheec
Confidence 456778899999999988776554 33345799999999999999999999999999876654
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.51 E-value=0.0034 Score=61.35 Aligned_cols=77 Identities=19% Similarity=0.347 Sum_probs=67.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCC-eEE--EEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGS-VVA--VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~--v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
...|-+.+||+.++.++|.+||..|.. |.. |+|+.+..+++.|-|||+|.+.+.|.+|....+.+.+..+-|.|--+
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 568889999999999999999999864 333 89999988899999999999999999999988888877888887544
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.16 E-value=0.0066 Score=63.44 Aligned_cols=82 Identities=17% Similarity=0.156 Sum_probs=68.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEE-EEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
.+-..+..|||..||..+++.++.++|...-.|++ |.|...+.++..+.|||.|..++++..|...-+.+.++-+.|+|
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv 508 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRV 508 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEe
Confidence 34455789999999999999999999998877776 77777777788999999999999999998866666777788998
Q ss_pred Eee
Q 016629 113 SEV 115 (386)
Q Consensus 113 ~~a 115 (386)
.-.
T Consensus 509 ~si 511 (944)
T KOG4307|consen 509 DSI 511 (944)
T ss_pred ech
Confidence 644
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.04 E-value=0.0049 Score=65.77 Aligned_cols=79 Identities=16% Similarity=0.259 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
...|||.|+|+..|.++|+.+|..+|.+..+.++..+.++++|.|||.|.++.+|..++..+++..+.-..+.|....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 5689999999999999999999999999999999999999999999999999999999998888888877777777655
No 124
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.89 E-value=0.0058 Score=63.60 Aligned_cols=77 Identities=19% Similarity=0.287 Sum_probs=66.7
Q ss_pred hhcCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEE
Q 016629 30 ERVKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV 109 (386)
Q Consensus 30 ~~~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~ 109 (386)
.+...+.++..++||||+...+...-+..+...||-|..+.... |||..|.....+..|+..++-..++|..
T Consensus 31 qp~~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~~k 102 (668)
T KOG2253|consen 31 QPVFQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDDQK 102 (668)
T ss_pred cccccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCcch
Confidence 34445567788999999999999999999999999988876654 9999999999999999999988999988
Q ss_pred EEEEe
Q 016629 110 VRVSE 114 (386)
Q Consensus 110 L~V~~ 114 (386)
+.+..
T Consensus 103 l~~~~ 107 (668)
T KOG2253|consen 103 LIENV 107 (668)
T ss_pred hhccc
Confidence 87765
No 125
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.48 E-value=0.041 Score=53.99 Aligned_cols=69 Identities=26% Similarity=0.331 Sum_probs=54.3
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcC----CCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEE
Q 016629 41 SVYVGGLPYSANEDSVRKVFDKY----GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (386)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~----G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L 110 (386)
.|-..+||+++++.++..||..- |....|-++..++++..|-|||.|+.+++|+.|+.. |...|+-+-|
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 44557999999999999999642 355677777877889999999999999999999985 4444544433
No 126
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.37 E-value=0.017 Score=53.77 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=56.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcC
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~ 101 (386)
..|||.||+.-++.+.|...|+.||+|....++.|..++..+-++|+|...-.|.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhc
Confidence 78999999999999999999999999998888888777888999999999999999988763
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.22 E-value=0.093 Score=40.86 Aligned_cols=55 Identities=20% Similarity=0.394 Sum_probs=41.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcC
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~ 101 (386)
....||+ +|..+-..||..+|+.||.|. |..+.+ .-|||.....+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 4456665 999999999999999999885 444443 389999999999999998775
No 128
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.12 E-value=0.018 Score=57.02 Aligned_cols=72 Identities=21% Similarity=0.398 Sum_probs=57.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCc-eeccEEEEEEeec
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR-TIDGRVVRVSEVA 116 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~-~i~Gr~L~V~~a~ 116 (386)
+.+|+|||.+.++..+|..+|...- --..+ ++ ..|||||.+.+...|..|++.++|+ .+.|+++.|...-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-ee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4789999999999999999997641 11111 22 3479999999999999999999998 4789999998775
Q ss_pred cc
Q 016629 117 TR 118 (386)
Q Consensus 117 ~~ 118 (386)
+.
T Consensus 75 ~k 76 (584)
T KOG2193|consen 75 PK 76 (584)
T ss_pred hH
Confidence 54
No 129
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.11 E-value=0.0016 Score=69.30 Aligned_cols=74 Identities=20% Similarity=0.279 Sum_probs=60.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
..++||.||++.+.+.+|...|..+|.|..+.+...... ..+|+|||+|..++++.+|+...++..++-..+.|
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i 741 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAI 741 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhe
Confidence 368899999999999999999999998888777633333 78999999999999999999976666555333333
No 130
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.10 E-value=0.094 Score=50.06 Aligned_cols=69 Identities=26% Similarity=0.381 Sum_probs=52.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEE-EEEEe
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV-VRVSE 114 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~-L~V~~ 114 (386)
.+.|-|-++|+... ..|..+|.+||.|+..... . .-.+-+|-|.+.-+|++||.. +|..|+|.. |-|.-
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-~----ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-S----NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC-C----CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 55666778887655 4567889999999886554 2 224889999999999999995 999999864 33544
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.07 E-value=0.0067 Score=58.60 Aligned_cols=79 Identities=29% Similarity=0.525 Sum_probs=62.1
Q ss_pred CCeEEEcCCCCCCcH-HHHH--HHhhcCCCeEEEEEeeCCC--C--CCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 39 ESSVYVGGLPYSANE-DSVR--KVFDKYGSVVAVKIVNDRS--T--RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 39 ~~~lfVgnLp~~~te-~~L~--~~F~~~G~I~~v~i~~~~~--~--~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
..-+||-+|+..+.. ..|+ ..|.+||.|..|.+..+.. . ....-+||+|...++|..||...+|..++|+.|+
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 356788899988644 4443 6799999999998888763 1 2334589999999999999999999999999877
Q ss_pred EEeecc
Q 016629 112 VSEVAT 117 (386)
Q Consensus 112 V~~a~~ 117 (386)
..+...
T Consensus 157 a~~gtt 162 (327)
T KOG2068|consen 157 ASLGTT 162 (327)
T ss_pred HhhCCC
Confidence 766543
No 132
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.90 E-value=0.36 Score=44.19 Aligned_cols=79 Identities=27% Similarity=0.355 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
..-..|+.+|..|....+..++...++..+.+.|.+-|..+..-...+++++...++-...+....++++..+.+|..+
T Consensus 27 ~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~L 105 (201)
T PF13851_consen 27 ELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDL 105 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445899999999999999999999999999999999999999999999999999999999999999999999988765
No 133
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=94.58 E-value=0.17 Score=37.26 Aligned_cols=55 Identities=18% Similarity=0.370 Sum_probs=44.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcC---CCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKY---GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~---G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l 100 (386)
+..|+|.|+. +++.++|..+|..| .....|.++.|. -|-|.|.+...|..|+.+|
T Consensus 5 peavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 5689999986 67889999999998 134578777762 6789999999999999865
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.50 E-value=0.0087 Score=64.24 Aligned_cols=76 Identities=24% Similarity=0.374 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+||+|||+..+++.+|+..|..+|.|..|.|-..+.+..-.||||.|.+...+-.|...+.+..|..-.+.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 3579999999999999999999999999999988665444445699999999999999999898888764444443
No 135
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.33 E-value=1 Score=38.97 Aligned_cols=81 Identities=25% Similarity=0.337 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016629 281 RSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (386)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (386)
.....-+.++.++-+++.+...+++.+..|+++++.||..+..+..-....+..+...++.+.++-..+-++-..|.+|.
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele 90 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELE 90 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHH
Confidence 34445567888888889999999999999999999999999888887777777777777766666666666666666554
Q ss_pred H
Q 016629 361 V 361 (386)
Q Consensus 361 ~ 361 (386)
.
T Consensus 91 ~ 91 (143)
T PF12718_consen 91 E 91 (143)
T ss_pred H
Confidence 3
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.09 E-value=0.24 Score=37.69 Aligned_cols=66 Identities=17% Similarity=0.384 Sum_probs=40.0
Q ss_pred eEEEcCC--CCCCcHHHHHHHhhcCC-----CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 41 SVYVGGL--PYSANEDSVRKVFDKYG-----SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 41 ~lfVgnL--p~~~te~~L~~~F~~~G-----~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
++|| |+ -..++..+|..+|...+ .|-.|.|..+ |+||+-.. +.|..++..|++..+.|++|.|+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS--------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 4555 33 33578889988887764 4566777665 99999864 68899999999999999999998
Q ss_pred ee
Q 016629 114 EV 115 (386)
Q Consensus 114 ~a 115 (386)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 65
No 137
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=93.63 E-value=1.2 Score=47.93 Aligned_cols=67 Identities=4% Similarity=0.076 Sum_probs=49.9
Q ss_pred eEEEcCC--CCCCcHHHHHHHhhcCCCe-----EEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 41 SVYVGGL--PYSANEDSVRKVFDKYGSV-----VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 41 ~lfVgnL--p~~~te~~L~~~F~~~G~I-----~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
++|| ++ -..++..+|-.++..-+.| -.|.|..+ |.||+.. ...|...+..|++..+.|++|.|+
T Consensus 488 ~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~-------~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRI-EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS-------HSTIELP-KGMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEE-ecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC-------ceEEEcC-hhhHHHHHHHhccccccCCceEEE
Confidence 4555 44 3458888888887776544 34666544 9999986 466888889999999999999999
Q ss_pred eec
Q 016629 114 EVA 116 (386)
Q Consensus 114 ~a~ 116 (386)
.+.
T Consensus 559 ~~~ 561 (629)
T PRK11634 559 LLG 561 (629)
T ss_pred ECC
Confidence 875
No 138
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.40 E-value=0.049 Score=54.85 Aligned_cols=74 Identities=15% Similarity=0.272 Sum_probs=59.0
Q ss_pred CCeEEEcCCCCCC-cHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSA-NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~-te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
.+.|-+.-.|+.+ +-.+|..+|.+||.|..|.|-.. .--|.|+|.+..+|-.|.. .++..|+++.|+|.|-.+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 3444455556664 55789999999999999988553 2378999999999988877 689999999999999876
Q ss_pred c
Q 016629 118 R 118 (386)
Q Consensus 118 ~ 118 (386)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 4
No 139
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=93.31 E-value=0.37 Score=41.32 Aligned_cols=73 Identities=19% Similarity=0.235 Sum_probs=53.7
Q ss_pred CCCCCeEEEcCCCCCCcH----HHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 36 IDDESSVYVGGLPYSANE----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te----~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
.++-.+|.|.=|..++.. ..+...++.||+|.+|.++. +.-|.|.|.+..+|-.|+.++.. ..-|..+.
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 345568888766555422 33455678899999998753 45899999999999999998865 55667777
Q ss_pred EEee
Q 016629 112 VSEV 115 (386)
Q Consensus 112 V~~a 115 (386)
+.|-
T Consensus 156 CsWq 159 (166)
T PF15023_consen 156 CSWQ 159 (166)
T ss_pred eecc
Confidence 7664
No 140
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.98 E-value=0.26 Score=44.19 Aligned_cols=80 Identities=11% Similarity=0.157 Sum_probs=50.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhc-CCCe---EEEEEeeCCCC---CCceEEEEEeCChhhHHHHHHhcCCceecc---
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDK-YGSV---VAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDG--- 107 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~-~G~I---~~v~i~~~~~~---~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G--- 107 (386)
....|.|.+||+++|++++...+.. ++.. ..+.-...... ....-|||.|.+.+++...+..++|+.|-+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 4669999999999999998887766 6655 33332222222 234568999999999999999999987742
Q ss_pred --EEEEEEeecc
Q 016629 108 --RVVRVSEVAT 117 (386)
Q Consensus 108 --r~L~V~~a~~ 117 (386)
.+..|++|.-
T Consensus 86 ~~~~~~VE~Apy 97 (176)
T PF03467_consen 86 NEYPAVVEFAPY 97 (176)
T ss_dssp -EEEEEEEE-SS
T ss_pred CCcceeEEEcch
Confidence 3456666654
No 141
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.90 E-value=0.55 Score=42.36 Aligned_cols=62 Identities=23% Similarity=0.270 Sum_probs=45.7
Q ss_pred cHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcC--CceeccEEEEEEeeccc
Q 016629 52 NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVRVSEVATR 118 (386)
Q Consensus 52 te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~--g~~i~Gr~L~V~~a~~~ 118 (386)
....|+.+|..|+.+..+.+... -+-..|.|.+.+.|..|...|+ +..+.|..|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 34789999999999988877653 2367899999999999999999 99999999999988543
No 142
>PRK11637 AmiB activator; Provisional
Probab=91.43 E-value=3.2 Score=42.37 Aligned_cols=35 Identities=11% Similarity=0.169 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
+..++.++..++.++..+..-....|.++..|++.
T Consensus 84 i~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 84 ISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 143
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=91.29 E-value=6.6 Score=33.92 Aligned_cols=82 Identities=24% Similarity=0.329 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016629 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (386)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (386)
++....++.+...+..+..+++.....+..|+.+...+|.++..++.-....++++..++.++-..++...++++.-++.
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777777888888888887777777777777888888888887777777777655554
Q ss_pred hH
Q 016629 360 QV 361 (386)
Q Consensus 360 ~~ 361 (386)
.+
T Consensus 128 ~t 129 (151)
T PF11559_consen 128 KT 129 (151)
T ss_pred HH
Confidence 44
No 144
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=91.19 E-value=1.7 Score=35.58 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhh
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINA--KKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (386)
++++.-.+.+..+..++++||..+.+. ++-...+|..+++|...+-.+ +++++.-++++.+|+.+-|+
T Consensus 35 ~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l---~~~l~~v~~~~~lLlE~~lk 104 (106)
T PF10805_consen 35 EDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKEL---SARLQGVSHQLDLLLENELK 104 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHhc
Confidence 444555566667788888888888887 888888999999999988877 99999999999999988765
No 145
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=90.89 E-value=0.21 Score=48.22 Aligned_cols=9 Identities=0% Similarity=0.353 Sum_probs=4.8
Q ss_pred ceEEEEEeC
Q 016629 80 KCYGFVTFG 88 (386)
Q Consensus 80 kG~aFVeF~ 88 (386)
.||-||-|.
T Consensus 160 lGFmYiRYt 168 (453)
T KOG2888|consen 160 LGFMYIRYT 168 (453)
T ss_pred heeeEEeec
Confidence 355555554
No 146
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.84 E-value=0.88 Score=47.21 Aligned_cols=82 Identities=13% Similarity=0.265 Sum_probs=63.2
Q ss_pred CCCCCCCeEEEcCCCCC-CcHHHHHHHhhcC----CCeEEEEEeeCCCC---------C-C-------------------
Q 016629 34 MTIDDESSVYVGGLPYS-ANEDSVRKVFDKY----GSVVAVKIVNDRST---------R-G------------------- 79 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~I~~v~i~~~~~~---------~-~------------------- 79 (386)
...+...+|-|+||.|. +...+|.-+|..| |.|..|.|+....| + +
T Consensus 169 ~~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 169 VLGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred ccccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34567889999999997 6888998888776 68989888763311 0 1
Q ss_pred -------------------ceEEEEEeCChhhHHHHHHhcCCceec--cEEEEEEee
Q 016629 80 -------------------KCYGFVTFGNPRSAVDAINDMNGRTID--GRVVRVSEV 115 (386)
Q Consensus 80 -------------------kG~aFVeF~~~~~A~~Ai~~l~g~~i~--Gr~L~V~~a 115 (386)
.-||.|+|.+.+.|...+..++|..|. |..|-+.|.
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 137999999999999999999999997 445555554
No 147
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.68 E-value=3.7 Score=37.70 Aligned_cols=70 Identities=10% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (386)
.++.+++.+++++.+..+. +......|.+.++...+..+++..+..+|.+.+.+++..++-|......+|
T Consensus 97 ~le~el~~l~~~l~~~~~~---~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNT---WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444443322 334444555555556666666666667777777666555555544444444
No 148
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=89.40 E-value=7.9 Score=35.13 Aligned_cols=73 Identities=21% Similarity=0.289 Sum_probs=34.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (386)
.++++|..-+....+.+..+.+|+.++..|+...+.....--.-.+.+..|+.+..++ ++.+..+|.++|.++
T Consensus 114 ~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l---~~~~~~~e~~F~~~~ 186 (190)
T PF05266_consen 114 KLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEAL---KEEIENAELEFQSVA 186 (190)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 3444443332223333455555555555555444444433333335555555554444 555556666666654
No 149
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=89.19 E-value=3.4 Score=34.06 Aligned_cols=66 Identities=15% Similarity=0.298 Sum_probs=47.5
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceecc
Q 016629 41 SVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (386)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G 107 (386)
.+.+...|+.++.++|..+.+.+- .|..++|+++.. .++-.+.+.|.+...|......+||+.++.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344444455556566766555553 466788887633 356678999999999999999999999863
No 150
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=88.58 E-value=0.43 Score=51.42 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=61.6
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCcee--ccEEEEEEeeccc
Q 016629 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI--DGRVVRVSEVATR 118 (386)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i--~Gr~L~V~~a~~~ 118 (386)
+.++.|.+-+.+..-|..+|..||.|..++...+-. .|.|+|...+.|..|+.+|+|+.+ -|-+.+|.+|+.-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N-----~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN-----MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc-----chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 444556666778888999999999999998877643 799999999999999999999976 4888999998764
Q ss_pred C
Q 016629 119 G 119 (386)
Q Consensus 119 ~ 119 (386)
.
T Consensus 375 ~ 375 (1007)
T KOG4574|consen 375 P 375 (1007)
T ss_pred c
Confidence 3
No 151
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.58 E-value=7.9 Score=37.93 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
+.+++.+++..+|..+...+|.++................++-.+.++
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~ 111 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEF 111 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444444443333333334444444444433
No 152
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.49 E-value=10 Score=35.70 Aligned_cols=71 Identities=11% Similarity=0.194 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhh
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (386)
+++..-..+..+|..++.+|+.+++..+....+.++++..+++.+..++.-.+.+...+++|.-++...+.
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456666777777777777778788888888888888888887777777777777776665554444
No 153
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=88.22 E-value=1.6 Score=45.26 Aligned_cols=21 Identities=24% Similarity=0.017 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEALINAK 325 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~ 325 (386)
.+.+.|.+..++.+.+...++
T Consensus 285 ~~~~il~k~~~~~~qq~~~~q 305 (752)
T KOG0670|consen 285 REEEILEKYKQKGEQQGSGAQ 305 (752)
T ss_pred HHHHHHHHHHhhhhhcccccc
Confidence 344446666666665444433
No 154
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=86.80 E-value=12 Score=39.14 Aligned_cols=56 Identities=20% Similarity=0.225 Sum_probs=33.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ----KQLTKLYKCFI 343 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~----~~~~~l~~~~~ 343 (386)
-|...++.++..++++.+....++-++++++++....++-..+.+ ..+.+|++.++
T Consensus 443 tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~ 502 (581)
T KOG0995|consen 443 TLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELL 502 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666777777777777777776666665555555544 23344444444
No 155
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=86.75 E-value=7.5 Score=35.21 Aligned_cols=77 Identities=29% Similarity=0.313 Sum_probs=51.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQL 367 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (386)
.++.++......+.....++..|+.++..++..+..+.+.....|..+.-|.=.|..+ .+++...+.|=+-||.-.+
T Consensus 106 ~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~---e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 106 ELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNML---EEKLRKLEEENRELVERWM 182 (194)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4455555555667777788888888888999999999999988888888888777766 5555555555555555443
No 156
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=86.48 E-value=6.4 Score=41.99 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016629 281 RSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (386)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (386)
...+....|+++|..+...+++-...++.|+.+.++|++++...+.....++.++.-.++.+.-|-+-.+.+ ..||
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni----~kL~ 400 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI----AKLQ 400 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH----HHHH
Confidence 344555688899999999999999999999999999999999999999999888887777765555443333 4455
Q ss_pred HhHhhh
Q 016629 361 VSIFNQ 366 (386)
Q Consensus 361 ~~~~~~ 366 (386)
.+|++.
T Consensus 401 ~~v~~s 406 (594)
T PF05667_consen 401 ALVEAS 406 (594)
T ss_pred HHHHHH
Confidence 555543
No 157
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=86.27 E-value=0.33 Score=46.87 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=64.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
..+++|||++.+.+.+.++..+|..+|.+..+.+...... .++|+++|.|...+.+..|+.......+.+..+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 4679999999999999988999999998888777665555 789999999999999999999544446666666555444
Q ss_pred cc
Q 016629 117 TR 118 (386)
Q Consensus 117 ~~ 118 (386)
..
T Consensus 167 ~~ 168 (285)
T KOG4210|consen 167 RR 168 (285)
T ss_pred cc
Confidence 33
No 158
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=86.22 E-value=4.2 Score=39.27 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhhhhHhHh
Q 016629 299 RVNVKEQLVLDLQKRSKKL--EEALINAKKLSSHRQKQLTKLYKCFIQVNEYA-----------ERLKSCEREFQVSIF 364 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~--e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 364 (386)
++.+....+-+-+.+.... +.+-+.+-.|++.+|..|.+++..|+||+.++ ++..+.++||..-+-
T Consensus 194 rv~kAs~~L~~yr~kngvfdp~~qaevq~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q 272 (372)
T COG3524 194 RVKKASNDLTDYRIKNGVFDPKAQAEVQMSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQ 272 (372)
T ss_pred HHHHHHhHHHHHHhhcCccChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 3333333333333333332 44455667799999999999999999999988 778888888765443
No 159
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=85.44 E-value=4.9 Score=30.12 Aligned_cols=49 Identities=18% Similarity=0.316 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
..+.+|+.++.-.|+.++.....+..-|+++.+|+..+-.| .+++++.+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L---~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLL---RERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence 55677888888888888888888888888888888887766 66666544
No 160
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=85.30 E-value=1.3 Score=45.71 Aligned_cols=68 Identities=16% Similarity=0.315 Sum_probs=52.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhc--CCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcC--CceeccEEEE
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDK--YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVR 111 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~--~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~--g~~i~Gr~L~ 111 (386)
..+.|.+.-||..+-.++++.+|.. |-++..|.+..+. -=||+|++..+|+.|+..|. -+.|.|++|.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 3467888999999999999999965 7888899886652 45999999999999987553 1234455443
No 161
>PRK04325 hypothetical protein; Provisional
Probab=85.25 E-value=6.8 Score=29.86 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
..+.+|+.++.-.|+.++...+....-|+++..|+..+-.| .+++++.+
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L---~~rl~~~~ 57 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLL---YQQMRDAN 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence 44777888888888888888888888888888888776665 66776643
No 162
>PRK00846 hypothetical protein; Provisional
Probab=85.11 E-value=9.8 Score=29.27 Aligned_cols=51 Identities=16% Similarity=0.124 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 303 KEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 303 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
-++-+.+|+.++.-.|+.++...+.....|+++.+|..++-.| +++|+..+
T Consensus 11 le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L---~~rL~~~~ 61 (77)
T PRK00846 11 LEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL---LEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence 3466778888888888888888888889999999999888777 77777765
No 163
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=85.06 E-value=6.9 Score=33.32 Aligned_cols=57 Identities=23% Similarity=0.384 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhh
Q 016629 310 LQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQ 366 (386)
Q Consensus 310 l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (386)
|.++.+.+|-.++..-....+||+...+.-.+|..|++-...|..|+--|+-+|.++
T Consensus 54 L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~i 110 (131)
T PF10158_consen 54 LAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSI 110 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999999999999999888887764
No 164
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=84.97 E-value=22 Score=33.46 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh----hh
Q 016629 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK----SC 355 (386)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~ 355 (386)
.+.++......+.|+.+.++..........|.+++..|+-.....+++....+.++..|+..+-++..-...+. ..
T Consensus 31 ~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m 110 (251)
T PF11932_consen 31 QQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQM 110 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666777777777777777777777777777777777777777777777777777776654444443 45
Q ss_pred hhhhhHhHhhhhhhee
Q 016629 356 EREFQVSIFNQLSFFL 371 (386)
Q Consensus 356 ~~~~~~~~~~~~~~~~ 371 (386)
-.+|+..|..-|-|++
T Consensus 111 ~~~L~~~v~~d~Pf~~ 126 (251)
T PF11932_consen 111 IDELEQFVELDLPFLL 126 (251)
T ss_pred HHHHHHHHhcCCCCCh
Confidence 5666666666666554
No 165
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=84.96 E-value=22 Score=34.79 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 283 IQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
.+....+..++..++...++..+++.+|+.+...++...+..-+.....|.++..+++....| ++.+.....+|..|
T Consensus 56 e~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl---~~q~~~~~~~L~~L 132 (314)
T PF04111_consen 56 EQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSL---KNQYEYASNQLDRL 132 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 344556667777777777777777777888888887777777777777777777777766655 55555555555433
No 166
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=84.90 E-value=0.5 Score=45.77 Aligned_cols=14 Identities=7% Similarity=0.316 Sum_probs=9.0
Q ss_pred CCcHHHHHHHhhcC
Q 016629 50 SANEDSVRKVFDKY 63 (386)
Q Consensus 50 ~~te~~L~~~F~~~ 63 (386)
.....+|-+.|+.|
T Consensus 168 tqpp~dLw~WyEpy 181 (453)
T KOG2888|consen 168 TQPPADLWDWYEPY 181 (453)
T ss_pred cCChhHHHHHhhhh
Confidence 34556777777766
No 167
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=84.35 E-value=26 Score=32.71 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhh
Q 016629 297 EERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQ 366 (386)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (386)
.++.+..+..+..|..+++..|.....+..-+..+++.+-.|++.|... .++.+.+..+|-.+++-+
T Consensus 168 ~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~---k~~~~~~~~eld~~l~el 234 (237)
T PF00261_consen 168 SEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKE---KEKYKKVQEELDQTLNEL 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 3456666777778888888888888888888888899999998888755 777788888887776644
No 168
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.23 E-value=8.7 Score=35.46 Aligned_cols=48 Identities=21% Similarity=0.145 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 353 (386)
...-|+++.++.+..|..+.+..-.++||+..|.+.|.+|-+.+++|.
T Consensus 159 ~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq 206 (216)
T KOG1962|consen 159 DLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQ 206 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 333344555555555555666666666666666666666655555543
No 169
>PRK00736 hypothetical protein; Provisional
Probab=83.93 E-value=7.8 Score=29.02 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
.-+.+|+.++.-.|+.++...+.+..-|+++..|...+-.| .++++..+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L---~~rl~~~~ 53 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL---TERFLSLE 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence 44677888888888888888888888888888888776655 66766543
No 170
>PRK00295 hypothetical protein; Provisional
Probab=83.73 E-value=8.6 Score=28.78 Aligned_cols=49 Identities=12% Similarity=0.196 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
..+.+|+.++.-.|+.+....+.+..-|+++..|...+-.| .++++..+
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L---~~rl~~~~ 53 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAAL---IKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh
Confidence 34677888888888888888888888888888888776655 66666643
No 171
>PRK04406 hypothetical protein; Provisional
Probab=83.69 E-value=9.6 Score=29.15 Aligned_cols=49 Identities=20% Similarity=0.195 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
++-+.+|+.++.-.|+.++...+.+..-|+++..|...+-.| .+++++.
T Consensus 10 e~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L---~~rl~~~ 58 (75)
T PRK04406 10 EERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYV---VGKVKNM 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 355667777777778888888888888888888888776655 5566553
No 172
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=83.51 E-value=11 Score=34.16 Aligned_cols=67 Identities=19% Similarity=0.178 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhh
Q 016629 295 HMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQL 367 (386)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (386)
-++.+.+..+....+|..++.+|+-.++++++.++++.-...|- .++.++.||-.+++|+.-+..|+
T Consensus 189 ~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ieEkk------~~eei~fLk~tN~qLKaQLegI~ 255 (259)
T KOG4001|consen 189 RATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREIEEKK------MKEEIEFLKETNRQLKAQLEGIL 255 (259)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456777778888899999999999999999998877555443 24567788999999998888776
No 173
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=83.34 E-value=1.8 Score=44.76 Aligned_cols=57 Identities=14% Similarity=0.306 Sum_probs=42.8
Q ss_pred CCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCcee---c-cEEEEEEeecccC
Q 016629 63 YGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI---D-GRVVRVSEVATRG 119 (386)
Q Consensus 63 ~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i---~-Gr~L~V~~a~~~~ 119 (386)
.|.=..+.++-|-.+ ...|||||-|.+++++..+.+++||+.. + .+.+.+.||.-.+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQG 474 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQG 474 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhc
Confidence 355555666666666 5789999999999999999999999964 3 4556677775443
No 174
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=82.59 E-value=17 Score=35.51 Aligned_cols=70 Identities=13% Similarity=0.158 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhheeeeeEEEEee
Q 016629 310 LQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLSFFLHYHVIISVS 380 (386)
Q Consensus 310 l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (386)
|..++..|.+.|...+....+.|+.+.+..+.|-+++.+...|...-.+|+-.| ....=||.-|=||-|.
T Consensus 110 l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L-~~rdeli~khGlVlv~ 179 (302)
T PF09738_consen 110 LMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL-KQRDELIEKHGLVLVP 179 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCeeeCC
Confidence 455566666666666666666666666666666666666666666666666555 3455567788877776
No 175
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=81.62 E-value=35 Score=32.43 Aligned_cols=58 Identities=22% Similarity=0.346 Sum_probs=29.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
-..++..|..+..+++.+...+.++..+.......+.+...+...+++++.++...+.
T Consensus 72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 129 (302)
T PF10186_consen 72 LERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELE 129 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555554444444444444444443333
No 176
>PRK02119 hypothetical protein; Provisional
Probab=81.54 E-value=13 Score=28.25 Aligned_cols=48 Identities=17% Similarity=0.138 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
.-+.+|+.++.-.|+.+......+..-|+++..|...+-.| .++++..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L---~~rl~~~ 56 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYM---ANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 55666777777788888888888888888888888776665 5566553
No 177
>PRK10884 SH3 domain-containing protein; Provisional
Probab=81.32 E-value=14 Score=33.95 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 353 (386)
+...+|+.++...+......+.-.++++.++.+|+.....+.-.++.++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555444444444444444444555555555544433333333
No 178
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=81.25 E-value=11 Score=28.36 Aligned_cols=64 Identities=20% Similarity=0.176 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhheee
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLSFFLH 372 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (386)
+++++..-+..+.++++....+|...++..+-.....+++.+|..-.-=+ +-++|..++.+|+.
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~-------------~r~iiGaiI~~i~~ 67 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWI-------------WRTIIGAIITAIIY 67 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHH
Confidence 44455555555555666666666666666655555555555554433211 23666777766553
No 179
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=81.05 E-value=21 Score=35.11 Aligned_cols=62 Identities=18% Similarity=0.296 Sum_probs=48.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEY 348 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 348 (386)
..++.+++.....++.+++.+.+|+.+.+.++..+++.+...++.+.++..+++.+.+.+.+
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~ 273 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGW 273 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45667777777788888888888888888888888888888888888888888777655443
No 180
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=80.46 E-value=25 Score=35.70 Aligned_cols=60 Identities=22% Similarity=0.326 Sum_probs=24.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
++...++|...+..+....+....|++.++.+|..+...+.-..+-+..+++|.+.+..+
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 334444444444444444444444444444444443333333333344444444444433
No 181
>PRK02793 phi X174 lysis protein; Provisional
Probab=79.91 E-value=15 Score=27.78 Aligned_cols=48 Identities=17% Similarity=0.200 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
+-+.+|+.++.-.|+.+....+.+..-|+++..|+..+-.| .++|+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L---~~rl~~~ 55 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLL---TEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhh
Confidence 55666777777777777777777778888887777766655 5566553
No 182
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=79.66 E-value=16 Score=37.25 Aligned_cols=68 Identities=12% Similarity=0.279 Sum_probs=57.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G 107 (386)
.+.|+|-.+|-.++-.||..|+..|- .|..|+|+++.. -.+-.+.|.|.+..+|......+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78999999999999999999887764 577899999533 345568999999999999999999999874
No 183
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=79.53 E-value=25 Score=26.73 Aligned_cols=61 Identities=15% Similarity=0.299 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQV 361 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (386)
..+.++..+|..|..+-.+|.............+..+...+++.+..+ +.++-.++.++..
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l---~~~~~~~e~~~~~ 65 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKEL---KKKLEELEKELES 65 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 345555556666665555555555554555555555555555444433 3444444444443
No 184
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=79.47 E-value=22 Score=36.82 Aligned_cols=53 Identities=13% Similarity=0.161 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 016629 283 IQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQL 335 (386)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~ 335 (386)
.+..++...++..|.+.++.|-.+...++.+..+|+.+|.-+++...++-++.
T Consensus 204 ~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ek 256 (596)
T KOG4360|consen 204 VKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEK 256 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35667888888888888888888888888888888888887777666555443
No 185
>PRK04406 hypothetical protein; Provisional
Probab=79.06 E-value=19 Score=27.48 Aligned_cols=48 Identities=23% Similarity=0.214 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
|++++...+-.+..++.-+..|-+.+....+....++.++..|.+.|.
T Consensus 9 le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 9 LEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444555555555555555555555555444
No 186
>PRK02119 hypothetical protein; Provisional
Probab=78.89 E-value=16 Score=27.68 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=30.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
++.|++++...+-.+..++.-+..|-+.+....+....++.++..|.+.|-.+
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555555555555555666666666666666666666666555443
No 187
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=78.76 E-value=18 Score=30.82 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=45.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (386)
.+..-.|-+-..=+.+..||+.++..||++.-..+.+-.++.+.+.-||.+|-|-+
T Consensus 11 ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER 66 (134)
T PF08232_consen 11 TEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQER 66 (134)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444556788899999999999999999999999999999999999553
No 188
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=78.18 E-value=17 Score=37.45 Aligned_cols=76 Identities=25% Similarity=0.299 Sum_probs=35.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
+..++..+++.+++.+..+.+|++...+++.... ...+..+....+.+|...+.++.+.-+.|.....+|+..+..
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~ 407 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKNLKKLKKLKK-QGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELER 407 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444444322 333445555666666666665544444444444444443333
No 189
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=78.16 E-value=20 Score=39.15 Aligned_cols=34 Identities=18% Similarity=0.343 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHH---hhhhhhhhHhHhhhh
Q 016629 334 QLTKLYKCFIQVNEYAERL---KSCEREFQVSIFNQL 367 (386)
Q Consensus 334 ~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 367 (386)
...-|.-+|.-+||-|..| +++|-.|++=+++.|
T Consensus 588 ~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaL 624 (697)
T PF09726_consen 588 DTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSAL 624 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3555666777777777655 466777777666654
No 190
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.41 E-value=30 Score=28.23 Aligned_cols=40 Identities=13% Similarity=0.362 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALIN 323 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (386)
...++|+..+..|+..-+...+.+.+||.++.-+...+..
T Consensus 37 kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 37 KQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555566666666655554444444
No 191
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=76.79 E-value=18 Score=28.22 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (386)
..+.+|+.+..+++.++.....-- -+.....+.+..-.||+||+-+-.++.=+..+-
T Consensus 7 ~~~~~L~~~~~~l~~~i~~~~~~l--~~~~~~~v~~hI~lLheYNeiKD~gQ~Lig~iA 63 (83)
T PF07061_consen 7 AEIQELKEQIEQLEKEISELEAEL--IEDPEKIVKRHIKLLHEYNEIKDIGQGLIGLIA 63 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--ccCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444445554445544444332210 233445566667778999999988887666543
No 192
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=76.02 E-value=44 Score=35.16 Aligned_cols=88 Identities=22% Similarity=0.179 Sum_probs=49.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhHHHHHH------HHHHHHHHHHHHHHHHHh
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKR----SKKLEEALINAKKLSSHRQKQL------TKLYKCFIQVNEYAERLK 353 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~e~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~~~~ 353 (386)
+...-++.++..+++..+.+.++..++.++ +.+||..|.+.+.++..--+.+ ..|+-.. -|+++++...
T Consensus 460 ~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~~~v~s~e~el~~-~~~~~~eer~ 538 (581)
T KOG0995|consen 460 QILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAEELVKSIELELDR-MVATGEEERQ 538 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 333344445555555555555555555543 3445554444333222221222 2222222 2788899999
Q ss_pred hhhhhhhHhHhhhhhheee
Q 016629 354 SCEREFQVSIFNQLSFFLH 372 (386)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~ 372 (386)
-+.++|+.+|+.++.|-++
T Consensus 539 ki~~ql~~~i~~i~~~k~~ 557 (581)
T KOG0995|consen 539 KIAKQLFAVIDQISDFKVS 557 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888654
No 193
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.56 E-value=14 Score=36.30 Aligned_cols=63 Identities=13% Similarity=0.245 Sum_probs=43.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYA 349 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 349 (386)
+.++.+|+.....++.+.+.+.+++.+.+.++..+++.+...++.+.++..++.-+.+-+.++
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t 269 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFT 269 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344555555556677777777777777777777777777777777777777777665544443
No 194
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=75.26 E-value=21 Score=26.57 Aligned_cols=55 Identities=16% Similarity=0.347 Sum_probs=43.3
Q ss_pred CCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 50 SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 50 ~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
.++-.+++..+..|+- . +|..++. || ||.|.+..+|+.+....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDRT----GF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecCC----EE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4677899999999974 2 3334432 33 79999999999999999999998887765
No 195
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=75.19 E-value=62 Score=34.95 Aligned_cols=16 Identities=6% Similarity=0.181 Sum_probs=10.0
Q ss_pred hhhHhHhhhhhheeee
Q 016629 358 EFQVSIFNQLSFFLHY 373 (386)
Q Consensus 358 ~~~~~~~~~~~~~~~~ 373 (386)
.|+..|..+++.|++.
T Consensus 506 ~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 506 QLEEEITKSFKKLMRK 521 (650)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3566666677766653
No 196
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=75.18 E-value=34 Score=25.95 Aligned_cols=28 Identities=21% Similarity=0.176 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHhHhhhh
Q 016629 340 KCFIQVNEYAERLKSCEREFQVSIFNQL 367 (386)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (386)
..-..|...|++|+......+.-|.+.|
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl~~LL 66 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERLRSLL 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555554444444444444
No 197
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=75.08 E-value=61 Score=28.86 Aligned_cols=12 Identities=33% Similarity=0.814 Sum_probs=5.2
Q ss_pred HHHHHHhHHHHH
Q 016629 288 ELKKEISHMEER 299 (386)
Q Consensus 288 ~~~~~~~~~~~~ 299 (386)
.+..++.++++.
T Consensus 92 ~l~~el~~l~~~ 103 (191)
T PF04156_consen 92 QLQEELDQLQER 103 (191)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 198
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=75.02 E-value=53 Score=28.20 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
+.+.+-.....+..|+..+.+|++.++.++.-....+-....|...+-
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555555555555444444444444444444
No 199
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=74.26 E-value=73 Score=29.81 Aligned_cols=55 Identities=18% Similarity=0.318 Sum_probs=38.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 301 NVKEQLVLDL---QKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 301 ~~~~~~~~~l---~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
.++..++++| ..-+..||..+..++.=...++..+..||+.|..|++..+.++.+
T Consensus 46 ~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 46 QERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 344555666666666666667788889999999999988888776
No 200
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=73.91 E-value=9.8 Score=37.19 Aligned_cols=8 Identities=0% Similarity=0.260 Sum_probs=3.5
Q ss_pred CcHHHHHH
Q 016629 51 ANEDSVRK 58 (386)
Q Consensus 51 ~te~~L~~ 58 (386)
+++.+|.+
T Consensus 213 ~~k~eid~ 220 (367)
T KOG0835|consen 213 TTKREIDE 220 (367)
T ss_pred CcHHHHHH
Confidence 44444433
No 201
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=73.77 E-value=68 Score=30.19 Aligned_cols=10 Identities=30% Similarity=0.777 Sum_probs=4.2
Q ss_pred HHHHHHhHHH
Q 016629 288 ELKKEISHME 297 (386)
Q Consensus 288 ~~~~~~~~~~ 297 (386)
+++.++++++
T Consensus 56 ~le~qv~~~e 65 (239)
T COG1579 56 DLENQVSQLE 65 (239)
T ss_pred HHHHHHHHHH
Confidence 3444444444
No 202
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=73.38 E-value=29 Score=32.32 Aligned_cols=71 Identities=25% Similarity=0.294 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHH
Q 016629 276 VKELDRSIQRREELKKEISHMEER---VNVKEQLVLDLQKRSKKLEEALINAKKL-----SSHRQKQLTKLYKCFIQVN 346 (386)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~e~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~ 346 (386)
..++.+.++.-+.+..++..|+++ ....+.+...|+++..||.+.|..+.+- -+++|+.+..|++.|.-|+
T Consensus 163 ~~eLqkr~~~v~~l~~q~~k~~~~qv~~in~qlErLRL~krrlQl~g~Ld~~~q~~~~ae~seLq~r~~~l~~~L~~L~ 241 (289)
T COG4985 163 ERELQKRLLEVETLRDQVDKMVEQQVRVINSQLERLRLEKRRLQLNGQLDDEFQQHYVAEKSELQKRLAQLQTELDALR 241 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346778888888888899888864 6777788888999999998887665442 2455666666666655443
No 203
>PRK02793 phi X174 lysis protein; Provisional
Probab=73.29 E-value=26 Score=26.45 Aligned_cols=50 Identities=12% Similarity=0.053 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
+++++.+.+-.+..++.-+..|-+.+....+....++.++..|.+.|..+
T Consensus 6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 55 (72)
T PRK02793 6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKAS 55 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444555555555555555555555555566666666666655544
No 204
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=73.13 E-value=19 Score=27.93 Aligned_cols=39 Identities=31% Similarity=0.224 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhh
Q 016629 330 HRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368 (386)
Q Consensus 330 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (386)
.+|..|.-|-.-+..|++.+++|.+.++=||--|.+..+
T Consensus 27 ~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 27 ELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777888999999999999999999998765
No 205
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=72.98 E-value=42 Score=30.28 Aligned_cols=59 Identities=25% Similarity=0.335 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERL 352 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 352 (386)
..+..++..++.++...+..+.++.+-++.+-+++++. |.++.-|++.+-.|+..|+.|
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L-------~l~~~~~e~k~~~l~~En~~L 177 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQAL-------QLQLNMLEEKLRKLEEENREL 177 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555555555555555555555555555543 344455555555555555544
No 206
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=72.91 E-value=49 Score=37.92 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (386)
+.++.+.+..+.++.+..++.+..++++++..+++-..+..+.++++.+..++|....
T Consensus 495 ~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~~ 552 (1317)
T KOG0612|consen 495 EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEAE 552 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Confidence 3444444556666666677777777777777777777777777888877777776543
No 207
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=72.90 E-value=29 Score=37.90 Aligned_cols=83 Identities=14% Similarity=0.159 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (386)
|....++.-+-.+|+++...+-++-+||++-+.+|-++++...-.+-.|.++..-+..+- +.|++|-..+++|-+--
T Consensus 85 qetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE---~~~srlh~le~eLsAk~ 161 (1265)
T KOG0976|consen 85 QETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIE---NLNSRLHKLEDELSAKA 161 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHhhhh
Confidence 444455566667778888888888899999999998888887777777766555444433 33666666666665555
Q ss_pred hhhhhh
Q 016629 364 FNQLSF 369 (386)
Q Consensus 364 ~~~~~~ 369 (386)
|.|..-
T Consensus 162 ~eIf~~ 167 (1265)
T KOG0976|consen 162 HDIFMI 167 (1265)
T ss_pred HHHHHH
Confidence 554443
No 208
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=72.52 E-value=17 Score=37.52 Aligned_cols=51 Identities=16% Similarity=0.130 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 016629 299 RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYA 349 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 349 (386)
.+++++...+||++++..|+.+++...+...+.|.++.+|+..+.+|+.-.
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 355666677777777777776666666666677778888888887774443
No 209
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.46 E-value=21 Score=31.42 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=29.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhhHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALI--NAKKLSSHRQKQLTKLYKCFIQVNE 347 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~ 347 (386)
.+..+|..+++++.+.+..+..|..+...|...+. ........++.++..|+.-|..++.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555665555555555555555555544442 2233333444445555555544444
No 210
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=72.29 E-value=47 Score=32.64 Aligned_cols=59 Identities=19% Similarity=0.267 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKS 354 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 354 (386)
|-|-+++-+++..+|+...++|-.+|--+.-+...-.-.-.+||.++.++.+.|..|..
T Consensus 90 i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql 148 (401)
T PF06785_consen 90 IRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL 148 (401)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 33557777888888888888887777766667777667778888888888777766643
No 211
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.05 E-value=31 Score=26.12 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=18.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016629 318 EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCERE 358 (386)
Q Consensus 318 e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 358 (386)
|..++.......+.|+.+.||+..|--| ++|++..+-.
T Consensus 21 E~tieeLn~~laEq~~~i~k~q~qlr~L---~~kl~~~~~~ 58 (72)
T COG2900 21 EQTIEELNDALAEQQLVIDKLQAQLRLL---TEKLKDLQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhccc
Confidence 3333333444445555555555544433 5666555443
No 212
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=72.02 E-value=29 Score=31.14 Aligned_cols=55 Identities=11% Similarity=0.207 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHHHHHHhhhh
Q 016629 302 VKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQL---------TKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~ 356 (386)
+..+++.-++.++..|-.-|++++++..++..+| +.+-+.+..|+.|+..++.++
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLGlt~~~EL~qnisksw~d~q~st~y~kt~~ 111 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLGLTVLKELKQNISKSWKDVQASTAYVKTSQ 111 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHhhhhhHHHHHHhhh
Confidence 3444555555566666666666666666655332 445666778999999988774
No 213
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=71.71 E-value=39 Score=31.91 Aligned_cols=61 Identities=28% Similarity=0.339 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhHH-H--HHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016629 299 RVNVKEQLVLDLQKRSKKLE-EALINAKKLSSHR-Q--KQLTKLYKCFIQVNEYAERLKSCEREF 359 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e-~~~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (386)
++...++...+|+..+++|. +...++.|+.-++ | +++..|++-+.|.+...+.|.-.=++|
T Consensus 53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReL 117 (333)
T KOG1853|consen 53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIREL 117 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666663 3333333333222 1 555556666666555555444444443
No 214
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.47 E-value=28 Score=36.75 Aligned_cols=45 Identities=33% Similarity=0.342 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 299 RVNVKEQLVLDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
.++..+.....|++++..+ +..+.++.+|+..|++..++|++++.
T Consensus 336 ~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~ 381 (557)
T COG0497 336 QLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVT 381 (557)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566677788888888 66778888899999999999998887
No 215
>PF14282 FlxA: FlxA-like protein
Probab=71.36 E-value=36 Score=27.69 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016629 301 NVKEQLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~~ 321 (386)
+.+.+.+..|+.+++.|+..+
T Consensus 47 e~k~~q~q~Lq~QI~~LqaQI 67 (106)
T PF14282_consen 47 EQKQQQIQLLQAQIQQLQAQI 67 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 216
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=70.80 E-value=41 Score=35.72 Aligned_cols=80 Identities=16% Similarity=0.324 Sum_probs=55.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHhhhh
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI-------QVNEYAERLKSCE 356 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~ 356 (386)
..-+.+..+|++|.+.++....-.....+...++++.+..+..-..+++..+..|...|. .++.+.+.+...+
T Consensus 282 ~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le 361 (569)
T PRK04778 282 EKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLE 361 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHH
Confidence 344567777888887777777777777788888888888877777777777777776654 3555555555555
Q ss_pred hhhhHhH
Q 016629 357 REFQVSI 363 (386)
Q Consensus 357 ~~~~~~~ 363 (386)
.+++.+.
T Consensus 362 ~~~~~~~ 368 (569)
T PRK04778 362 KQYDEIT 368 (569)
T ss_pred HHHHHHH
Confidence 5555443
No 217
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=70.80 E-value=8.1 Score=39.40 Aligned_cols=75 Identities=29% Similarity=0.328 Sum_probs=45.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhheee
Q 016629 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLSFFLH 372 (386)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (386)
|..+|.++...-.+..+||++++.||.. ...++-||.||+..++|+-..+...-+|=-.+ .|+|+|.
T Consensus 274 id~LE~rv~~~taeNqeL~kkV~~Le~~-------N~sLl~qL~klQt~v~q~an~s~qt~tC~av~------~lS~~l~ 340 (472)
T KOG0709|consen 274 IDGLESRVSAFTAENQELQKKVEELELS-------NRSLLAQLKKLQTLVIQVANKSTQTSTCLAVL------LLSFCLL 340 (472)
T ss_pred HHHHhhhhhhcccCcHHHHHHHHHHhhc-------cHHHHHHHHHHHHHHhhcccchhccchhHHHH------HHHHHHH
Confidence 3334445555556667777777766543 34567788999999998866555555553333 4556655
Q ss_pred eeEEEEee
Q 016629 373 YHVIISVS 380 (386)
Q Consensus 373 ~~~~~~~~ 380 (386)
.-|++.|.
T Consensus 341 ~s~lp~~~ 348 (472)
T KOG0709|consen 341 LSTLPCFS 348 (472)
T ss_pred Hhhccccc
Confidence 54554443
No 218
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=70.70 E-value=23 Score=34.25 Aligned_cols=13 Identities=8% Similarity=0.335 Sum_probs=6.8
Q ss_pred cHHHHHHHhhcCC
Q 016629 52 NEDSVRKVFDKYG 64 (386)
Q Consensus 52 te~~L~~~F~~~G 64 (386)
++.++...|...+
T Consensus 152 ~erdm~~AYK~ad 164 (335)
T KOG0113|consen 152 HERDMKAAYKDAD 164 (335)
T ss_pred cHHHHHHHHHhcc
Confidence 4455555555543
No 219
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=70.28 E-value=22 Score=31.79 Aligned_cols=7 Identities=43% Similarity=0.591 Sum_probs=2.9
Q ss_pred CeEEEcC
Q 016629 40 SSVYVGG 46 (386)
Q Consensus 40 ~~lfVgn 46 (386)
..|||.-
T Consensus 38 rsvWvAr 44 (195)
T KOG0107|consen 38 RSVWVAR 44 (195)
T ss_pred eeEEEee
Confidence 3444443
No 220
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.25 E-value=41 Score=25.47 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 016629 297 EERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEY 348 (386)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 348 (386)
++++++.+-.+....+-+..|-+.+....+.....|.++.-|.+-|..|+..
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~ 58 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS 58 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3344444444444444445556677788888888999999999888877654
No 221
>PRK03918 chromosome segregation protein; Provisional
Probab=69.74 E-value=68 Score=35.73 Aligned_cols=10 Identities=30% Similarity=0.650 Sum_probs=5.9
Q ss_pred CCCCCeEEEc
Q 016629 36 IDDESSVYVG 45 (386)
Q Consensus 36 ~~~~~~lfVg 45 (386)
..++.+++||
T Consensus 21 f~~g~~~i~G 30 (880)
T PRK03918 21 FDDGINLIIG 30 (880)
T ss_pred cCCCcEEEEc
Confidence 3445677666
No 222
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=69.33 E-value=38 Score=34.77 Aligned_cols=85 Identities=24% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----------HHHHHHHHHHHHH
Q 016629 278 ELDRSIQRREELKKEISH-MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ-----------KQLTKLYKCFIQV 345 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~ 345 (386)
+..++|+.+--.+.--+. |+|.+...+.-+.||+...-++|.+|..|-+++.... -...|||+.|+++
T Consensus 466 eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~a~~~E~eklE~el~~l 545 (622)
T COG5185 466 ELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLEKELNDL 545 (622)
T ss_pred HHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q ss_pred H-HHHHHHhhhhhhhhHh
Q 016629 346 N-EYAERLKSCEREFQVS 362 (386)
Q Consensus 346 ~-~~~~~~~~~~~~~~~~ 362 (386)
+ ..+..+..+|+.+|.+
T Consensus 546 nL~s~ts~l~~eq~vqs~ 563 (622)
T COG5185 546 NLLSKTSILDAEQLVQST 563 (622)
T ss_pred hhhccchHhhHHHHHHHH
No 223
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=69.17 E-value=6.1 Score=42.25 Aligned_cols=12 Identities=8% Similarity=0.127 Sum_probs=6.2
Q ss_pred EEEEeCChhhHH
Q 016629 83 GFVTFGNPRSAV 94 (386)
Q Consensus 83 aFVeF~~~~~A~ 94 (386)
+||.|.+...+.
T Consensus 695 ~~~k~~de~~~~ 706 (877)
T KOG0151|consen 695 NPVKYDDEDRDK 706 (877)
T ss_pred cccccchhhhHH
Confidence 566665444433
No 224
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=69.15 E-value=88 Score=29.46 Aligned_cols=35 Identities=17% Similarity=0.332 Sum_probs=18.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKK 326 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 326 (386)
++.-+...++..+...++|++++.++|..+.....
T Consensus 39 e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~ 73 (239)
T COG1579 39 ELEALNKALEALEIELEDLENQVSQLESEIQEIRE 73 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345555666666666666666555554443
No 225
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=68.94 E-value=41 Score=32.80 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=44.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
.+-.+|.+|++.+++.+..+.+|++++..--.+++..+.....++.++..|...|.+.
T Consensus 109 ~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 109 ALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888888889999999999998887666667777777777777777777776543
No 226
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=68.93 E-value=68 Score=27.59 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHH
Q 016629 331 RQKQLTKLYKCFI 343 (386)
Q Consensus 331 ~~~~~~~l~~~~~ 343 (386)
++..+.-|+..|-
T Consensus 78 l~rriq~LEeele 90 (143)
T PF12718_consen 78 LNRRIQLLEEELE 90 (143)
T ss_pred HHhhHHHHHHHHH
Confidence 4444455554444
No 227
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=68.67 E-value=93 Score=32.86 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 016629 300 VNVKEQLVLDLQKRSK 315 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~ 315 (386)
+...++....|+.+.+
T Consensus 180 L~~~~ee~e~L~~~~k 195 (546)
T PF07888_consen 180 LEQEEEEMEQLKQQQK 195 (546)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 228
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.65 E-value=36 Score=32.51 Aligned_cols=35 Identities=17% Similarity=0.227 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ 332 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~ 332 (386)
..+++.+..+.+++.++.+++..+..++.-.-+||
T Consensus 66 ~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 66 SKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444
No 229
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=68.47 E-value=57 Score=31.17 Aligned_cols=34 Identities=24% Similarity=0.210 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016629 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYK 340 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~ 340 (386)
+..|++..++|.-.|+.++..+..+=-||..+.+
T Consensus 76 c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kk 109 (307)
T PF10481_consen 76 CENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKK 109 (307)
T ss_pred HHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 230
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=68.35 E-value=48 Score=30.66 Aligned_cols=61 Identities=23% Similarity=0.120 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhh
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQ 366 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (386)
+...+..+..+++++++.+.+-=...|+++..|.+++--++.+=++|..-...||--|+..
T Consensus 152 ~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 152 ENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhcc
Confidence 3466677778888888888888888999999999999999999999998888888777653
No 231
>PF14282 FlxA: FlxA-like protein
Probab=68.34 E-value=32 Score=28.00 Aligned_cols=47 Identities=15% Similarity=0.161 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEE----ALINAKKLSSHRQKQLTKLYKCFIQVNEYAER 351 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 351 (386)
+.+..|+.+++.|.+ --..+.+....+|.+++-|+-.|.+++.....
T Consensus 26 ~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~ 76 (106)
T PF14282_consen 26 KQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAE 76 (106)
T ss_pred HHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555544 12344566677888888888888887654443
No 232
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=68.30 E-value=48 Score=34.90 Aligned_cols=34 Identities=12% Similarity=0.105 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 329 SHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 329 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
...+...++....+.+..+-.++++..|.+++.+
T Consensus 199 ~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l 232 (546)
T PF07888_consen 199 ESSEELKEERESLKEQLAEARQRIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444555555555555544
No 233
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.24 E-value=1.1e+02 Score=29.06 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAK 325 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (386)
+.++...+.+.++++++..+...+....
T Consensus 77 ~~i~~~~~~i~~~r~~l~~~~~~l~~~~ 104 (302)
T PF10186_consen 77 ERIERLRKRIEQKRERLEELRESLEQRR 104 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433333333
No 234
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=68.14 E-value=59 Score=35.07 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
++++-..+..|+.+..+|+.-|..++-....+|--+.||.-.+-.+.+|+.++.+-
T Consensus 490 ~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~ 545 (961)
T KOG4673|consen 490 EEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRAL 545 (961)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34444578888999999999999999888899999999999999888888875543
No 235
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=68.07 E-value=40 Score=36.93 Aligned_cols=62 Identities=19% Similarity=0.328 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhhHHHHHHHH-HHHHHHHH
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLE---EALINAKKLSSHRQKQLTK-LYKCFIQV 345 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e---~~~~~~~~~~~~~~~~~~~-l~~~~~~~ 345 (386)
..+..++..+.+++...+.|-+.+.+|+++...|. +.|+..=.-..++|..+++ ++..+-.|
T Consensus 558 ~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l 623 (717)
T PF10168_consen 558 LAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLL 623 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666677666666666666666666652 2223333334455655544 44444444
No 236
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=67.98 E-value=77 Score=35.04 Aligned_cols=79 Identities=22% Similarity=0.241 Sum_probs=66.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----HHHHHHHHhhhhhhhhHh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ----VNEYAERLKSCEREFQVS 362 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~ 362 (386)
-+.+..|.++++.+..++++..-||..+-.|.-.|..+...+...|.++++|+..+.. |.+..+.+...++.+.+|
T Consensus 318 ~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~L 397 (775)
T PF10174_consen 318 SDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVL 397 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999999999999999999999999988876 445556666677777666
Q ss_pred Hhh
Q 016629 363 IFN 365 (386)
Q Consensus 363 ~~~ 365 (386)
...
T Consensus 398 q~k 400 (775)
T PF10174_consen 398 QKK 400 (775)
T ss_pred HHH
Confidence 554
No 237
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=67.05 E-value=84 Score=35.99 Aligned_cols=81 Identities=21% Similarity=0.220 Sum_probs=48.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----h-----hHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKL-----S-----SHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~-----~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
..+...|..|+.+++.....+..+...+..||..+.+.+.- + -.+|+++..|++.+-++++.+.+ +.--
T Consensus 809 ~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K-k~~i 887 (1293)
T KOG0996|consen 809 RKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK-KARI 887 (1293)
T ss_pred HHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHH
Confidence 34445555555544444444444444444444444333322 2 45577888888888888877777 7777
Q ss_pred hhhhHhHhhhhh
Q 016629 357 REFQVSIFNQLS 368 (386)
Q Consensus 357 ~~~~~~~~~~~~ 368 (386)
.+||..|+.+-.
T Consensus 888 ~~lq~~i~~i~~ 899 (1293)
T KOG0996|consen 888 KELQNKIDEIGG 899 (1293)
T ss_pred HHHHHHHHHhhc
Confidence 788888777644
No 238
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=66.59 E-value=15 Score=25.18 Aligned_cols=33 Identities=12% Similarity=0.393 Sum_probs=21.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEA 320 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (386)
-|......||.+++.-.+++.+||.|.+.|-++
T Consensus 9 lLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 9 LLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 556667778888888888999999888777553
No 239
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=66.58 E-value=1e+02 Score=27.88 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLS 328 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~ 328 (386)
....+|+.+...++...+..++..
T Consensus 134 ~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 134 EEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444433333333333
No 240
>smart00338 BRLZ basic region leucin zipper.
Probab=66.39 E-value=30 Score=25.23 Aligned_cols=23 Identities=17% Similarity=0.237 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016629 302 VKEQLVLDLQKRSKKLEEALINA 324 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~e~~~~~~ 324 (386)
.+.+.+.+|+.++..|+.+-...
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L 45 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERL 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666555544433
No 241
>PRK00295 hypothetical protein; Provisional
Probab=66.26 E-value=51 Score=24.60 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ 344 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (386)
.+..++.-+..|-+.+....+....++.++..|.+.|..
T Consensus 13 kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 13 RQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444555555444443
No 242
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=65.54 E-value=88 Score=35.50 Aligned_cols=70 Identities=20% Similarity=0.377 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH--------------HHHHHHHHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 278 ELDRSIQRREELKKEISHMEERVNV--------------KEQLVLDLQKRS-KKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~-~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
+.+...+.-+.++.++..+++.... .++.+.+++++. +-|..++...+....++++++.+|+..+
T Consensus 338 Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~ 417 (1074)
T KOG0250|consen 338 EIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQI 417 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444433322 333333333333 3333444444444455555555555555
Q ss_pred HHHHH
Q 016629 343 IQVNE 347 (386)
Q Consensus 343 ~~~~~ 347 (386)
.+|.+
T Consensus 418 ~~L~~ 422 (1074)
T KOG0250|consen 418 NSLRE 422 (1074)
T ss_pred HHHHH
Confidence 55443
No 243
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=65.03 E-value=26 Score=35.62 Aligned_cols=55 Identities=27% Similarity=0.318 Sum_probs=38.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
.+.|+.||-.|--.+| .+.++--+++.||-..|+..+++.+-+||.+.+|.++++
T Consensus 571 ~delr~qi~el~~ive---~lk~~~~kel~kl~~dleeek~mr~~lemei~~lkka~~ 625 (627)
T KOG4348|consen 571 LDELRAQIIELLCIVE---ALKKDHGKELEKLRKDLEEEKTMRSNLEMEIEKLKKAVL 625 (627)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHhh
Confidence 3455555533333333 333444566778888888889999999999999999987
No 244
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=64.94 E-value=44 Score=25.33 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=12.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (386)
.|+..|..+=+.+...+..+.+|+.+...+
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444444444444444444444444433
No 245
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.67 E-value=52 Score=28.90 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=24.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHH
Q 016629 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS--SHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~--~~~~~~~~~l~~~~~~~ 345 (386)
++..|...+.....++.+|..+.+.|+.+|.+....- .+++.++..|+....++
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l 128 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEEL 128 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555544444433322 23344444444444433
No 246
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=64.66 E-value=79 Score=32.49 Aligned_cols=72 Identities=14% Similarity=0.266 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHH----------------------HHHHHH
Q 016629 278 ELDRSIQRREELKKEISHME--------------ERVNVKEQLVLDLQKRSK----------------------KLEEAL 321 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~----------------------~~e~~~ 321 (386)
+.++.++.-.+|+.|+.-+| .-+|+++.-+.||.+|.- ++=+=+
T Consensus 143 q~e~qkeLi~QLk~Ql~dLE~~AYe~Geg~LPq~viLekQk~ilDeLr~Kl~lnl~i~~lsteelr~qVD~A~~q~VnP~ 222 (621)
T KOG3759|consen 143 QNERQKELIKQLKEQLEDLERTAYENGEGELPQTVILEKQKAILDELREKLELNLDIDKLSTEELRRQVDDALKQLVNPF 222 (621)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHhChH
Confidence 44555666667777777776 126777777777776641 122223
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 016629 322 INAKKLSSHRQKQLTKLYKCFIQVNEYA 349 (386)
Q Consensus 322 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 349 (386)
-.+.+|+.++|-|.+.||--+.=+|+.+
T Consensus 223 k~KeQLV~QLkTQItDLErFInFlQ~e~ 250 (621)
T KOG3759|consen 223 KEKEQLVDQLKTQITDLERFINFLQDEV 250 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3577888889999999887666555544
No 247
>PHA02562 46 endonuclease subunit; Provisional
Probab=64.42 E-value=86 Score=32.84 Aligned_cols=7 Identities=14% Similarity=0.501 Sum_probs=3.9
Q ss_pred CCeEEEc
Q 016629 39 ESSVYVG 45 (386)
Q Consensus 39 ~~~lfVg 45 (386)
+.++++|
T Consensus 28 g~~~i~G 34 (562)
T PHA02562 28 KKTLITG 34 (562)
T ss_pred CEEEEEC
Confidence 4555555
No 248
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=64.05 E-value=1.4e+02 Score=32.76 Aligned_cols=60 Identities=25% Similarity=0.260 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHH
Q 016629 284 QRREELKKEISHMEE-------RVNVKEQLVLDLQKRSKKLEEALINAK-------KLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~e~~~~~~~-------~~~~~~~~~~~~l~~~~~ 343 (386)
|.+.+|+.+|+.+.. .+...++..++||+++..|+...+.-+ +--.+-|++-+.||++|.
T Consensus 439 q~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~ 512 (697)
T PF09726_consen 439 QSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQ 512 (697)
T ss_pred hhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777766652 366666777777777766655443333 222333344455555555
No 249
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=64.04 E-value=75 Score=30.09 Aligned_cols=28 Identities=14% Similarity=0.054 Sum_probs=16.9
Q ss_pred HHHHhhhhhhhhHhHhhhhhheeeeeEE
Q 016629 349 AERLKSCEREFQVSIFNQLSFFLHYHVI 376 (386)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (386)
..++...=+++.--|.+.+.+|.++|..
T Consensus 130 ~~k~~~~l~~l~~~v~~l~~~~~~~~~~ 157 (256)
T PF14932_consen 130 CSKLNNELNQLLGEVSKLASELAHAHSG 157 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3344444455555567777788777754
No 250
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=64.01 E-value=83 Score=28.61 Aligned_cols=57 Identities=25% Similarity=0.250 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhHhH
Q 016629 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI-QVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 363 (386)
..+|+.+...++..++.+.+..+.+.+++.-..+.|. |+..++.+...++.+++.+.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~ 177 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQ 177 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777777777777777777766666664 34444444444444444443
No 251
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=63.98 E-value=43 Score=24.97 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=13.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEE 319 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 319 (386)
+|+..++..++-+++....+.+.++++..|+.
T Consensus 8 ~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~ 39 (69)
T PF04102_consen 8 ELEIKLAFQEDTIEELNDVVTEQQRQIDRLQR 39 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 252
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=63.93 E-value=55 Score=30.12 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=16.2
Q ss_pred EEeCChhhHHHHHH--hcCCceec
Q 016629 85 VTFGNPRSAVDAIN--DMNGRTID 106 (386)
Q Consensus 85 VeF~~~~~A~~Ai~--~l~g~~i~ 106 (386)
-.=.+.++|.+|+. .|+|..|-
T Consensus 63 ~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 63 HDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred eecchHHHHHHhhcceeeccceee
Confidence 33457889999985 57898883
No 253
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=63.67 E-value=95 Score=30.69 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=28.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhh
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI-QVNEYAERLKSCEREFQ 360 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 360 (386)
-..+|..|+.+++.++..+.+-+++..+|-..+...+.....-|..+.+.+..+. +..+.++....|+.+|.
T Consensus 13 t~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~~L~ 85 (344)
T PF12777_consen 13 TEEQVEEMQEELEEKQPELEEKQKEAEELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEEELA 85 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554444444444444444444333333222222333333333333222 12223444445555543
No 254
>PRK04325 hypothetical protein; Provisional
Probab=63.48 E-value=58 Score=24.71 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
+++++.+-.+..++.-+..|-+.+....+....++.++..|.+.+.
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~ 54 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMR 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444555555555544443
No 255
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=62.97 E-value=30 Score=27.73 Aligned_cols=41 Identities=24% Similarity=0.140 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhh
Q 016629 328 SSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368 (386)
Q Consensus 328 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (386)
+.++|..|-.|-.-+.-|+++|=||+|.++=|---|.+.++
T Consensus 65 VLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 65 VLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 34567777778888888999999999999888777777654
No 256
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=62.81 E-value=84 Score=28.73 Aligned_cols=59 Identities=32% Similarity=0.421 Sum_probs=34.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (386)
.+...+..+...+++-.....+.-+-..++|..+..+.+++..-+.++.+++..|...+
T Consensus 104 ~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~kd~~kl~kae~~l~~a~ 162 (216)
T cd07599 104 ELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSLKDEKQLAKLERKLEEAK 162 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555666555566667777777777777776554
No 257
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=62.70 E-value=76 Score=35.97 Aligned_cols=30 Identities=20% Similarity=0.201 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 016629 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLT 336 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~ 336 (386)
..+.+.++++||++++++.+...+++..++
T Consensus 443 ~~~~~~~ieele~el~~~~~~l~~~~e~~~ 472 (1041)
T KOG0243|consen 443 KKEMAEQIEELEEELENLEKQLKDLTELYM 472 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555556555555555554444
No 258
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=62.48 E-value=55 Score=23.48 Aligned_cols=11 Identities=36% Similarity=0.552 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 016629 333 KQLTKLYKCFI 343 (386)
Q Consensus 333 ~~~~~l~~~~~ 343 (386)
+.|+.||....
T Consensus 38 k~ll~lYE~Vs 48 (55)
T PF05377_consen 38 KDLLSLYEVVS 48 (55)
T ss_pred HHHHHHHHHHH
Confidence 44555555544
No 259
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=62.02 E-value=1.2e+02 Score=34.59 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=31.7
Q ss_pred HHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERV-NVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERL 352 (386)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 352 (386)
+.++++|..+++++ +.-.....++++|...|+.++++.+-+.+.+-..+..+...+..+++.....
T Consensus 375 d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i 441 (1074)
T KOG0250|consen 375 DRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHI 441 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444444443 3344444455555555555555555555555555555555554444444333
No 260
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=61.96 E-value=5.8 Score=35.50 Aligned_cols=78 Identities=12% Similarity=0.175 Sum_probs=56.1
Q ss_pred CCCCeEEEcCCCCCCcH-----HHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccE-EE
Q 016629 37 DDESSVYVGGLPYSANE-----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VV 110 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te-----~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr-~L 110 (386)
+-.+++++++++..+.. .....+|.+|.+.....+.. +.++.-|-|.++..|..|...+++..|.|. .+
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr-----sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~ 82 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR-----SFRRVRINFSNPEAAADARIKLHSTSFNGKNEL 82 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH-----hhceeEEeccChhHHHHHHHHhhhcccCCCceE
Confidence 34567888888877533 23456677666655444433 345667899999999999999999999988 88
Q ss_pred EEEeecccC
Q 016629 111 RVSEVATRG 119 (386)
Q Consensus 111 ~V~~a~~~~ 119 (386)
..-++.+..
T Consensus 83 k~yfaQ~~~ 91 (193)
T KOG4019|consen 83 KLYFAQPGH 91 (193)
T ss_pred EEEEccCCC
Confidence 887776543
No 261
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=61.37 E-value=47 Score=27.44 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhhhhHHHHHH
Q 016629 305 QLVLDLQKRSKKLE-EALIN-AKKLSSHRQKQL 335 (386)
Q Consensus 305 ~~~~~l~~~~~~~e-~~~~~-~~~~~~~~~~~~ 335 (386)
..+.+|+.+..+|. .+... +..|..|.|..+
T Consensus 7 lrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~ 39 (111)
T PF12001_consen 7 LRIKDLESELSKMKTSQEDSNKTELEKYKQLYL 39 (111)
T ss_pred HHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHH
Confidence 55666666666664 33333 566666666444
No 262
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=61.20 E-value=49 Score=24.04 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEALIN 323 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~ 323 (386)
+.+.+|+.++..|+.....
T Consensus 26 ~~~~~Le~~~~~L~~en~~ 44 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEE 44 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 263
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=61.03 E-value=97 Score=37.76 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=36.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALIN-------AKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 353 (386)
++.+++.++..+++++....++++...++|++|.. .+....+++.++++.+..+.+++.-.+.+.
T Consensus 1018 le~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1018 LEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34444455556777777777777777777766622 344444555555555555555544444333
No 264
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=60.95 E-value=59 Score=28.66 Aligned_cols=47 Identities=13% Similarity=0.227 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-----HHHH----HHHHHHHHHHHHH
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQL-----TKLY----KCFIQVNEYAERL 352 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~-----~~l~----~~~~~~~~~~~~~ 352 (386)
++..++.+++.|-.-|.++.++..++..+| ..|. +.+-.|++.++.+
T Consensus 37 EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnlskg~~~vq~S~aY~ 92 (162)
T PF04201_consen 37 ELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLSKGWHDVQDSNAYK 92 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHHHHhHhhhchhHHH
Confidence 334444455555555666666666666553 3333 3334477777774
No 265
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.87 E-value=48 Score=35.77 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=15.9
Q ss_pred HHHHHHHHhhhhhhhhHhHhhhhhheeee
Q 016629 345 VNEYAERLKSCEREFQVSIFNQLSFFLHY 373 (386)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (386)
+..+.+.+...+++|.-++...+-|+|..
T Consensus 271 i~~le~e~~e~~~~l~~l~~~~~p~~l~~ 299 (650)
T TIGR03185 271 LKEIEAARKANRAQLRELAADPLPLLLIP 299 (650)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHhhhH
Confidence 33445555566666666665555555443
No 266
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=60.43 E-value=79 Score=26.78 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
-..+.+||--.++..++|-.|..+.--+|+.|-.|...=..|.+--+++...
T Consensus 12 InrInelQQaKKk~~EELgEa~~l~eaL~~ELDsL~~EkvhLeeilnkKqe~ 63 (134)
T PF15233_consen 12 INRINELQQAKKKSSEELGEAQALWEALQRELDSLNGEKVHLEEILNKKQET 63 (134)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3444555555555556666666666666666666655444444444444433
No 267
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=60.22 E-value=1.8e+02 Score=28.56 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 016629 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ 344 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (386)
..|..+...+...+++.++...++|.++..|...+-.
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~ 248 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEE 248 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444433
No 268
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=60.05 E-value=1.2e+02 Score=32.90 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=42.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQL 367 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (386)
.++.+|+.|++.+..+.+...-|+...+-=+-++..-...+.-+|..+..-+.+..++ ..+..++|.+|+++++.+-
T Consensus 335 qL~~qVAsLQeev~sq~qEqaiLq~SLqDK~AElevERv~sktLQ~ELsrAqea~~~l---qqq~~~aee~Lk~v~eav~ 411 (739)
T PF07111_consen 335 QLRGQVASLQEEVASQQQEQAILQHSLQDKAAELEVERVGSKTLQAELSRAQEARRRL---QQQTASAEEQLKLVSEAVS 411 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 5667777777766666666655555554444444444444444555555444444443 3344456666666665544
Q ss_pred hh
Q 016629 368 SF 369 (386)
Q Consensus 368 ~~ 369 (386)
+|
T Consensus 412 S~ 413 (739)
T PF07111_consen 412 SS 413 (739)
T ss_pred HH
Confidence 43
No 269
>PTZ00464 SNF-7-like protein; Provisional
Probab=59.92 E-value=1e+02 Score=28.44 Aligned_cols=9 Identities=0% Similarity=0.039 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 016629 337 KLYKCFIQV 345 (386)
Q Consensus 337 ~l~~~~~~~ 345 (386)
+|...+..|
T Consensus 79 ~l~~q~~nl 87 (211)
T PTZ00464 79 MMMQQQFNM 87 (211)
T ss_pred HHHHHHHHH
Confidence 333333333
No 270
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=59.86 E-value=14 Score=32.89 Aligned_cols=40 Identities=25% Similarity=0.343 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLY 339 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 339 (386)
.|..++++.||+.++.+||.+++..++..+++-.++.+.+
T Consensus 101 ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~~ 140 (181)
T KOG3335|consen 101 EEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKPE 140 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 5667788899999999999877777776666665555543
No 271
>PRK04863 mukB cell division protein MukB; Provisional
Probab=59.56 E-value=1e+02 Score=36.82 Aligned_cols=10 Identities=30% Similarity=0.607 Sum_probs=6.6
Q ss_pred ceEEEEEeCC
Q 016629 80 KCYGFVTFGN 89 (386)
Q Consensus 80 kG~aFVeF~~ 89 (386)
.||++|+|.+
T Consensus 85 ~~Y~~lef~d 94 (1486)
T PRK04863 85 VCYAALDVVN 94 (1486)
T ss_pred ceEEEEEEEe
Confidence 4677777743
No 272
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=59.34 E-value=1.2e+02 Score=27.43 Aligned_cols=34 Identities=21% Similarity=0.188 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 309 DLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 309 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
+++.++..|+..+...++.......+...+++.+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~ 157 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLEKRE 157 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333333333333333333
No 273
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=59.28 E-value=1.8e+02 Score=28.45 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (386)
....+..++..+...+..+.+...+.|.++..|...+-.+.
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445556666666666666666666666666666555443
No 274
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=59.27 E-value=2.2 Score=39.30 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=60.1
Q ss_pred CCCCCCeEEEcC----CCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEE
Q 016629 35 TIDDESSVYVGG----LPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (386)
Q Consensus 35 ~~~~~~~lfVgn----Lp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L 110 (386)
.-+...+++-|+ |...++++.+...|+..|.|..+.+..+.++.+..++||++......-.|+....+...--+++
T Consensus 76 ~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 76 EDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKV 155 (267)
T ss_pred cchhhcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCc
Confidence 334456777777 7777888999999999999999999988888888999999988777777777666665544443
Q ss_pred E
Q 016629 111 R 111 (386)
Q Consensus 111 ~ 111 (386)
.
T Consensus 156 ~ 156 (267)
T KOG4454|consen 156 T 156 (267)
T ss_pred c
Confidence 3
No 275
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=59.16 E-value=30 Score=34.84 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=31.7
Q ss_pred cCCCCCCCCeEEEcCCCCC-CcHHHHHHHhhcC----CCeEEEEEee
Q 016629 32 VKMTIDDESSVYVGGLPYS-ANEDSVRKVFDKY----GSVVAVKIVN 73 (386)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~----G~I~~v~i~~ 73 (386)
.+...++...|-|.||.|. +...+|..+|+.| |.|..|.|..
T Consensus 139 ~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 139 VPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred ccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 3444677889999999997 7788999888776 6677676654
No 276
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=59.04 E-value=1.2e+02 Score=26.05 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKKLS 328 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 328 (386)
++.+.+.+..++..+..+...++......
T Consensus 28 ~~~a~~~~~~~~~~l~~~~~qL~~l~~~a 56 (135)
T TIGR03495 28 LERANRVLKAQQAELASKANQLIVLLALA 56 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33333444444444444444444443333
No 277
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=58.86 E-value=86 Score=25.18 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=42.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH----HHHHHHHHHHhh
Q 016629 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF----IQVNEYAERLKS 354 (386)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~ 354 (386)
..+||...-++|.+++++.++. |.++ -..|.+.....++-.-.+.+|+.+| .+|+.++++...
T Consensus 10 ~l~DL~~rYs~L~s~lkKfkq~----q~~I---~q~L~eRA~~d~kaRE~l~rLd~aFP~G~~~~~qE~~k~m~ 76 (107)
T PRK15365 10 EYRDLEQSYMQLNHCLKKFHQI----RAKV---SQQLAERAESPKKSRETESILHNLFPQGVAGVNQEAEKDLK 76 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHH---HHHHHHHhcCCHHHHHHHHHHHHHCcchhhHHhHHHHHHHH
Confidence 4468888888888887776553 3333 3456677777778888888888775 556665555433
No 278
>PF12592 DUF3763: Protein of unknown function (DUF3763); InterPro: IPR022547 This domain is found in bacterial regulartory ATPases 3.6.3. from EC, and is approximately 60 amino acids in length. The domain is found C-terminal to PF07728 from PFAM. There is a single completely conserved residue F that may be functionally important. ; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances; PDB: 3NBX_X.
Probab=58.53 E-value=60 Score=23.42 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHH-------HHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 308 LDLQKRSKKLEEALINAKKLSSHRQ-------KQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
.++..+...+|..+.....+.+..| .-++++|..|++| ++.|+...
T Consensus 3 ~e~~~qL~~~~~~l~~qR~~F~~~qPhlFI~~~wl~~IE~Sl~~l---~eqL~q~~ 55 (57)
T PF12592_consen 3 EEALAQLDEAEHELRQQRSLFHQHQPHLFIDSEWLAAIEASLQQL---AEQLEQLK 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT---TTS-HHHHHHHHHHHHHH---HHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcCcCHHHHHHHHHHHHHH---HHHHHHHh
Confidence 4566677778888888888888887 6789999999999 66666554
No 279
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=58.46 E-value=1.1e+02 Score=25.60 Aligned_cols=85 Identities=16% Similarity=0.205 Sum_probs=50.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHH---HHHH----HHHHHHHhhh
Q 016629 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKK---LSSHRQKQLTKLYKC---FIQV----NEYAERLKSC 355 (386)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~---~~~~~~~~~~~l~~~---~~~~----~~~~~~~~~~ 355 (386)
-..++.+++.+++++....+....|..++-+|.......+. -...++.++..|+.- +|++ -+..+-|+.=
T Consensus 25 lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~D 104 (120)
T PF12325_consen 25 LRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVEELRAD 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34788888888888888888888888888877655544433 333444444444332 3332 2334444444
Q ss_pred hhhhhHhHhhhhhhe
Q 016629 356 EREFQVSIFNQLSFF 370 (386)
Q Consensus 356 ~~~~~~~~~~~~~~~ 370 (386)
=.+|+-+...++..+
T Consensus 105 v~DlK~myr~Qi~~l 119 (120)
T PF12325_consen 105 VQDLKEMYREQIDQL 119 (120)
T ss_pred HHHHHHHHHHHHHHh
Confidence 455666666655443
No 280
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=58.33 E-value=2.1e+02 Score=29.49 Aligned_cols=61 Identities=16% Similarity=0.130 Sum_probs=44.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERL 352 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 352 (386)
|+.-+++..+.+.++..+|+.+.+-+|.+.....+.-.++|.++.|+++.+--.+|.|..|
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l 408 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKL 408 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445677777777777888888888888888888888888888888877666665443
No 281
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=58.07 E-value=66 Score=37.21 Aligned_cols=14 Identities=36% Similarity=0.351 Sum_probs=7.1
Q ss_pred hhhhhhHhHhhhhh
Q 016629 355 CEREFQVSIFNQLS 368 (386)
Q Consensus 355 ~~~~~~~~~~~~~~ 368 (386)
+|.+--.+|+.+|.
T Consensus 232 ~E~~tr~~Id~~L~ 245 (1123)
T PRK11448 232 SEEETRILIDQQLR 245 (1123)
T ss_pred CHHHHHHHHHHHHH
Confidence 34444456665553
No 282
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=58.00 E-value=1.6e+02 Score=33.39 Aligned_cols=87 Identities=17% Similarity=0.089 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-H--HHHHHHHHHHHhhhhh
Q 016629 281 RSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYK-C--FIQVNEYAERLKSCER 357 (386)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~~~~~~~~ 357 (386)
..+++..-+...|..++++......+...+-++..-|+..+-+.+.=...+++++++|-. | -.+|-..++.|-..-.
T Consensus 499 ~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~ 578 (1195)
T KOG4643|consen 499 NRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHN 578 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHH
Confidence 333455556666666667777777777777777777788888888888888888888866 1 1234455666766777
Q ss_pred hhhHhHhhhh
Q 016629 358 EFQVSIFNQL 367 (386)
Q Consensus 358 ~~~~~~~~~~ 367 (386)
+++-++++..
T Consensus 579 elkk~idaL~ 588 (1195)
T KOG4643|consen 579 ELKKYIDALN 588 (1195)
T ss_pred HHHHHHHHHH
Confidence 7777776643
No 283
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=57.98 E-value=1.4e+02 Score=26.71 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=14.0
Q ss_pred hhHhHhhhhhheeeeeEEEEee
Q 016629 359 FQVSIFNQLSFFLHYHVIISVS 380 (386)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~ 380 (386)
|..+|...+..+-..+++|.|+
T Consensus 106 l~~li~~a~~~l~~~~i~i~~~ 127 (198)
T PRK03963 106 LKALTKEAVEELGEDKVVVRSN 127 (198)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5555555666666667777664
No 284
>PRK14067 exodeoxyribonuclease VII small subunit; Provisional
Probab=57.89 E-value=58 Score=25.21 Aligned_cols=33 Identities=9% Similarity=0.057 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhh
Q 016629 336 TKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368 (386)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (386)
...+....-++.|..+|...+.+++++++..++
T Consensus 35 ~lyeeG~~L~k~C~~~L~~ae~kI~~l~~g~~~ 67 (80)
T PRK14067 35 ALYKEGLGLARACREQLAKARNEIRLFTEGEVK 67 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344556666889999999999999999886654
No 285
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=57.73 E-value=1.4e+02 Score=33.79 Aligned_cols=88 Identities=16% Similarity=0.140 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 283 IQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
+...+.+.+++.-++...++.+.+..++-++.+++...+-++.....+.+.++...++.+.-.+.-++-|+-.+...|..
T Consensus 261 k~~~r~l~k~~~pi~~~~eeLe~~~~et~~~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~ 340 (1072)
T KOG0979|consen 261 KKELRKLEKEIKPIEDKKEELESEKKETRSKISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKR 340 (1072)
T ss_pred HHHHHHHHHhhhhhhhhhhhHHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555666666666666666666666666666666666666666666666666666666655
Q ss_pred Hhhhhhhe
Q 016629 363 IFNQLSFF 370 (386)
Q Consensus 363 ~~~~~~~~ 370 (386)
|.+..+-|
T Consensus 341 i~~~~k~i 348 (1072)
T KOG0979|consen 341 IEKAKKMI 348 (1072)
T ss_pred HHHHHHHH
Confidence 55554444
No 286
>PF15294 Leu_zip: Leucine zipper
Probab=57.70 E-value=1.7e+02 Score=28.13 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKK 326 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 326 (386)
...++|. .|..+-..+.+++..-++.....-++..+|+..|.....
T Consensus 129 ll~kEi~---rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 129 LLNKEID---RLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445444 444555555555555555555555555555555544444
No 287
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=57.51 E-value=65 Score=24.60 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 336 TKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
...+....-++.|+++|...|++++.++..
T Consensus 34 ~~ye~G~~L~k~c~~~L~~ae~kv~~l~~~ 63 (75)
T PRK14064 34 DMYQKGIELTKLCQDKLQSAEKRMAKVVTD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455666777889999999999999988754
No 288
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=57.49 E-value=1.4e+02 Score=26.37 Aligned_cols=60 Identities=27% Similarity=0.293 Sum_probs=53.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (386)
.++...++.+.++++...+...+|+.....|++-++.|..|.++--..+.=|..-|.+|.
T Consensus 87 ~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~ 146 (159)
T PF05384_consen 87 HELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVS 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 455667777889999999999999999999999999999999999999999999888883
No 289
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=57.36 E-value=1.7e+02 Score=28.05 Aligned_cols=6 Identities=50% Similarity=0.606 Sum_probs=2.2
Q ss_pred HHHHHH
Q 016629 347 EYAERL 352 (386)
Q Consensus 347 ~~~~~~ 352 (386)
++.++|
T Consensus 232 e~~~rl 237 (269)
T PF05278_consen 232 EMKGRL 237 (269)
T ss_pred HHHHHH
Confidence 333333
No 290
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=56.79 E-value=1.4e+02 Score=26.38 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQL--TKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (386)
+.+.+|++..+++ ......+-.+.+++| +-.+....++++++++++-....++-+..+..+
T Consensus 48 k~veeLe~~~~q~---~~~~s~~~~~~vk~L~k~~~~~l~d~inE~t~k~~El~~~i~el~~~~~K 110 (165)
T PF09602_consen 48 KQVEELEKELKQF---KREFSDLYEEYVKQLRKATGNSLNDSINEWTDKLNELSAKIQELLLSPSK 110 (165)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHH
Confidence 4445555555544 233333344444555 334555566789999999999999888887744
No 291
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=56.75 E-value=1.5e+02 Score=26.70 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhhhhhhhhHhHhhhhhhe
Q 016629 343 IQVNEYAERLKSCEREFQVSIFNQLSFF 370 (386)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (386)
.+++..+..++.+=...-=-|.++.+|+
T Consensus 138 ~~~~~~~~~~~~~anrwTDNI~~l~~~~ 165 (188)
T PF03962_consen 138 EKLKEEIKIAKEAANRWTDNIFSLKSYL 165 (188)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3333334444433333333344444444
No 292
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=56.58 E-value=1.4e+02 Score=27.80 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALI 322 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~ 322 (386)
+++++....++|.+.+.||.++.
T Consensus 158 leele~e~ee~~erlk~le~E~s 180 (290)
T COG4026 158 LEELEAEYEEVQERLKRLEVENS 180 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443333
No 293
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.45 E-value=32 Score=40.45 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhhHhH
Q 016629 299 RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ---VNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 363 (386)
.+...+.....++++.+.+|-.+..+..--..+++++.++...+.+ +.+|.+.|..++.++..+.
T Consensus 585 el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 585 EINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHH
Confidence 3444444444555555555555555555555566666666666663 3667778888888887766
No 294
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=56.31 E-value=2e+02 Score=29.37 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 016629 331 RQKQLTKLYKCFI 343 (386)
Q Consensus 331 ~~~~~~~l~~~~~ 343 (386)
+|+.+++|+..+.
T Consensus 208 ~kk~~~~l~~~l~ 220 (420)
T COG4942 208 RKKTLAQLNSELS 220 (420)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 295
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=56.20 E-value=1e+02 Score=29.52 Aligned_cols=23 Identities=30% Similarity=0.687 Sum_probs=14.9
Q ss_pred HHHhhhhhhhhHhHhhhhhheeeeeE
Q 016629 350 ERLKSCEREFQVSIFNQLSFFLHYHV 375 (386)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (386)
+.-.-||.+||-+..- |||.+|+
T Consensus 168 dEyE~~EeeLqkly~~---Y~l~f~n 190 (338)
T KOG3647|consen 168 DEYEDCEEELQKLYQR---YFLRFHN 190 (338)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHhh
Confidence 4455688888887653 5555554
No 296
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=56.09 E-value=57 Score=32.27 Aligned_cols=13 Identities=8% Similarity=0.102 Sum_probs=6.6
Q ss_pred hhhhhhhHhHhhh
Q 016629 354 SCEREFQVSIFNQ 366 (386)
Q Consensus 354 ~~~~~~~~~~~~~ 366 (386)
..+.+++.++...
T Consensus 302 ~l~~~~~~l~GD~ 314 (344)
T PF12777_consen 302 ELEEQLKNLVGDS 314 (344)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHhcccHHHH
Confidence 4455555555443
No 297
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=55.31 E-value=1 Score=45.06 Aligned_cols=77 Identities=18% Similarity=0.340 Sum_probs=62.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
.+.+-|.|+|+...|+-|..++..||.|..|..+.... -....-|+|...+.+..||..|+|..+....+.|.|-..
T Consensus 80 srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~--etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 80 SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDS--ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccch--HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 34688899999999999999999999999886533211 122445889999999999999999999999999877643
No 298
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=55.18 E-value=1.1e+02 Score=33.52 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=53.8
Q ss_pred HHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHhhhhhhh
Q 016629 288 ELKKEISHMEERV----NVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNE----YAERLKSCEREF 359 (386)
Q Consensus 288 ~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~ 359 (386)
.++.++..+.+++ +..++....+..+++.|++.+....+-+-+.|.++..||+-|-.+.. ....|.+++-+|
T Consensus 370 ~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDEL 449 (717)
T PF09730_consen 370 QLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDEL 449 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445554444322 22333444567778888888888888777778888888887765544 445588888888
Q ss_pred hHhHhhhhhh
Q 016629 360 QVSIFNQLSF 369 (386)
Q Consensus 360 ~~~~~~~~~~ 369 (386)
.++-+.+-.+
T Consensus 450 vtfSEeLAqL 459 (717)
T PF09730_consen 450 VTFSEELAQL 459 (717)
T ss_pred HHHHHHHHHH
Confidence 8777765443
No 299
>PRK14160 heat shock protein GrpE; Provisional
Probab=55.11 E-value=84 Score=29.01 Aligned_cols=68 Identities=21% Similarity=0.214 Sum_probs=38.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----HHHHHHHHHHHHHHHHHHHHhhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ-----KQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
+++.++..+++.++..++.+.+|..+...+--..+|.++-...-+ --..++-+.||-|-|.=++....
T Consensus 58 ~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~ 130 (211)
T PRK14160 58 ELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAV 130 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhc
Confidence 455555556666666666666666666665555555444333222 33455666667776666665544
No 300
>PRK02224 chromosome segregation protein; Provisional
Probab=55.08 E-value=1.9e+02 Score=32.20 Aligned_cols=10 Identities=30% Similarity=0.574 Sum_probs=6.0
Q ss_pred CCCCCeEEEc
Q 016629 36 IDDESSVYVG 45 (386)
Q Consensus 36 ~~~~~~lfVg 45 (386)
..++.+|++|
T Consensus 21 f~~g~~~i~G 30 (880)
T PRK02224 21 LEDGVTVIHG 30 (880)
T ss_pred cCCCeEEEEC
Confidence 3456667666
No 301
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=54.48 E-value=54 Score=35.25 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------HHHHHHHHHHHHHHHHHHHH
Q 016629 302 VKEQLVLDLQKRSKKLEEALINAKKLSS-----------------HRQKQLTKLYKCFIQVNEYA 349 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~e~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~ 349 (386)
+++..+.+|+..+..+++.+....+|.. ++..+|..|++.|.+|.+.+
T Consensus 119 EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~ 183 (617)
T PF15070_consen 119 EQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLTNEN 183 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444455555555555444444444332 23377888888888887665
No 302
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=54.35 E-value=1.7e+02 Score=33.56 Aligned_cols=10 Identities=20% Similarity=0.275 Sum_probs=5.8
Q ss_pred CCCCCeEEEc
Q 016629 36 IDDESSVYVG 45 (386)
Q Consensus 36 ~~~~~~lfVg 45 (386)
..++.+++||
T Consensus 21 f~~~~~~i~G 30 (1164)
T TIGR02169 21 FSKGFTVISG 30 (1164)
T ss_pred ecCCeEEEEC
Confidence 3455666665
No 303
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=54.26 E-value=1.7e+02 Score=32.08 Aligned_cols=68 Identities=10% Similarity=0.231 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 295 HMEERVNVKEQLVLDLQKRSKKLEEALIN--------AKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~e~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
.++.+-|+.-+.++-+..+.+++.+.+.. ++...-+-=+.-..|+.+|..|+.+.-+|..+|.|-+.|
T Consensus 452 ~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL 527 (861)
T PF15254_consen 452 LLQSKNEELLKVIENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKENQIL 527 (861)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHh
Confidence 33334444444444445555555433322 222222222455678899999999999999998876544
No 304
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=54.14 E-value=1.6e+02 Score=31.13 Aligned_cols=43 Identities=23% Similarity=0.391 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYK 340 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~ 340 (386)
.++..+.+...+|+.+.++=|+.++.+..+-...|-++..++.
T Consensus 435 ~~~n~~sqL~~~lk~q~~~qee~~s~~~~~~e~~q~e~~~~Q~ 477 (607)
T KOG0240|consen 435 DQINKQSQLMEKLKEQLLDQEELLSSTRRLYEDIQQELSEIQE 477 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 4456666666666666666666666666666666655555544
No 305
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=54.09 E-value=74 Score=24.36 Aligned_cols=31 Identities=16% Similarity=0.109 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 335 LTKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 335 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
+...++...-++.|..+|...|++++.++..
T Consensus 33 l~lyeeG~~L~k~C~~~L~~ae~kv~~l~~~ 63 (76)
T PRK14068 33 LDLYQRGMKLSAACDTTLKNAEKKVNDLIKE 63 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455667777888999999999999888754
No 306
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=54.06 E-value=1.2e+02 Score=27.29 Aligned_cols=50 Identities=24% Similarity=0.278 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 016629 299 RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEY 348 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 348 (386)
+++++++-+.+|..-+.-|-+.|+.+.+....++.-+.||-..|..+++.
T Consensus 68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~e 117 (182)
T PF15035_consen 68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDE 117 (182)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777777777777777777777777777777777777765333
No 307
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=54.04 E-value=1.7e+02 Score=34.44 Aligned_cols=70 Identities=17% Similarity=0.196 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 353 (386)
+.....+.+...++..+...+..+..+..+...+|..+..+............+++....++.....+.+
T Consensus 210 ~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei~~l~~~~~~l~~~~~~~~~l~~ql~~l~~~~~ 279 (1311)
T TIGR00606 210 KYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKK 279 (1311)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444445555555555555555555555555555555555444444444444444444333
No 308
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=54.02 E-value=1.8e+02 Score=27.92 Aligned_cols=72 Identities=22% Similarity=0.297 Sum_probs=37.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHHHHHHHhhhhhhhhHhHh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYK---CFIQVNEYAERLKSCEREFQVSIF 364 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~ 364 (386)
.++..|..+..+++.-++.+..|......||..++.++.=---.||.|..|+. +|. +-...+|.|||.+..
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfm------dEyEklE~EL~~lY~ 239 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFM------DEYEKLEEELQKLYE 239 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHH------HHHHHHHHHHHHHHH
Confidence 44445555555556666666666666666655554444333333444444443 333 444556777776655
Q ss_pred h
Q 016629 365 N 365 (386)
Q Consensus 365 ~ 365 (386)
.
T Consensus 240 ~ 240 (267)
T PF10234_consen 240 I 240 (267)
T ss_pred H
Confidence 3
No 309
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=54.01 E-value=1.3e+02 Score=27.68 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
..+..-..+...|++.|...++..+. |...|-.|.++...+..-+.+++.|
T Consensus 40 ~l~s~y~~q~~~Lq~qLlq~~k~~~~-------l~~eLq~l~~~~~~k~~qe~eI~~L 90 (206)
T PF14988_consen 40 ELVSRYAKQTSELQDQLLQKEKEQAK-------LQQELQALKEFRRLKEQQEREIQTL 90 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443 4444444444444444444444443
No 310
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=53.94 E-value=7.3 Score=42.40 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhHHHHH--HHHHHHHHHHHHH
Q 016629 284 QRREELKKEISHMEER--VNVKEQLVLDLQK 312 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 312 (386)
.|.+..++.++.|++. ++.-.|+..-|-|
T Consensus 462 ~ms~l~~ka~~l~ad~~~~~D~~qhp~~llK 492 (1194)
T KOG4246|consen 462 LMSGLSRKALELLADDKFFEDRIQHPCNLLK 492 (1194)
T ss_pred hhhHHHHHHHHHhcCccccccccccHHHHHH
Confidence 5556666667666654 4444455544443
No 311
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.93 E-value=2.1e+02 Score=27.42 Aligned_cols=53 Identities=9% Similarity=0.090 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (386)
..+++.++.......+|+.....|+..+..+..|.....-...+++.....+.
T Consensus 165 ~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~~~~e~a~l~ 217 (265)
T COG3883 165 AALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALE 217 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33445556666666677777777777777777777777766666666555444
No 312
>PRK09039 hypothetical protein; Validated
Probab=53.81 E-value=1.6e+02 Score=29.13 Aligned_cols=53 Identities=19% Similarity=0.191 Sum_probs=39.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 016629 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ 344 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (386)
.++...-++....+++..|..+...||.+|..++.-..+.|.++..|...|..
T Consensus 131 ~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 131 VSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345777788888888888888888888888888888887777666553
No 313
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=53.63 E-value=1.1e+02 Score=26.08 Aligned_cols=81 Identities=19% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (386)
.+.+.+..++.++.+.+++-...+.+|++....+...++..++--.+++-.+.+|-..+-.++...--+...|.+|..-+
T Consensus 37 ~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~l 116 (141)
T PF13874_consen 37 KRVEAQEEEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRL 116 (141)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34446667777777777777777777777666666666666555555554444333332222222222334444444433
Q ss_pred h
Q 016629 364 F 364 (386)
Q Consensus 364 ~ 364 (386)
.
T Consensus 117 e 117 (141)
T PF13874_consen 117 E 117 (141)
T ss_dssp -
T ss_pred H
Confidence 3
No 314
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=53.21 E-value=1.3e+02 Score=31.83 Aligned_cols=29 Identities=7% Similarity=0.133 Sum_probs=19.6
Q ss_pred hhhhhhhhHhHhhhhhheeeeeEEEEeec
Q 016629 353 KSCEREFQVSIFNQLSFFLHYHVIISVSV 381 (386)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (386)
+..-..|+..|...|..|-..|..+.|.+
T Consensus 374 ~~~a~~l~~~v~~~l~~L~m~~~~f~v~~ 402 (563)
T TIGR00634 374 RKAAERLAKRVEQELKALAMEKAEFTVEI 402 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEE
Confidence 33446677888888888777776665543
No 315
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=52.97 E-value=1.6e+02 Score=25.92 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=46.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRS--------------KKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--------------~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 353 (386)
+++-+..++.++++++...+..|.... .-+.......+.-...++..+.++.+.+.+|+..-+++.
T Consensus 46 qLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~ 125 (177)
T PF13870_consen 46 QLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLR 125 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666777776666666544 333444444455555666777777777777777777777
Q ss_pred hhhhhhhH
Q 016629 354 SCEREFQV 361 (386)
Q Consensus 354 ~~~~~~~~ 361 (386)
.....|+.
T Consensus 126 ~~~~~l~~ 133 (177)
T PF13870_consen 126 KQNKKLRQ 133 (177)
T ss_pred HHHHHHHH
Confidence 77766653
No 316
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=52.86 E-value=81 Score=24.12 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 336 TKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
...+....-++.|..+|..+|+++++++..
T Consensus 33 ~lyeeG~~L~k~C~~~L~~aE~ki~~l~~~ 62 (76)
T PRK14063 33 SYFKEGMELSKLCDEKLKNVQEQMAVILGE 62 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666888999999999999988754
No 317
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.86 E-value=66 Score=30.35 Aligned_cols=64 Identities=25% Similarity=0.343 Sum_probs=39.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhHh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC-FIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~ 362 (386)
.|+.+|+.|+-.|..+.+++.|-.+++.-|..- .+-|+++.|+|+. ..|| +.++.++=+++.+|
T Consensus 229 ~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad--------~e~~~~~ek~Hke~v~qL---~~k~~~~lk~~a~l 293 (305)
T KOG3990|consen 229 KLKEEIARLKKLLHQKDQLILEKDKQISNLKAD--------KEYQKELEKKHKERVQQL---QKKKEESLKAIAQL 293 (305)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc--------hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 688899999988999999887766665544222 2334666666666 3334 33344444444443
No 318
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=52.71 E-value=40 Score=36.80 Aligned_cols=57 Identities=21% Similarity=0.184 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh---------------hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLS---------------SHRQKQLTKLYKCFIQVNEYAERLKSCEREFQV 361 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (386)
..+.|++.+..=+|+++..+.-.. -+.+.++.|||..|.||.+.++.|+....+|+-
T Consensus 56 rRcdemeRklrfl~~ei~k~~i~~~~~~~~~~~p~~~~i~dle~~l~klE~el~eln~n~~~L~~n~~eL~E 127 (829)
T KOG2189|consen 56 RRCDEMERKLRFLESEIKKAGIPLPDLDESPPAPPPREIIDLEEQLEKLESELRELNANKEALKANYNELLE 127 (829)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCccccCCCCCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 455556666666666555543322 356678888888888888888888887776654
No 319
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.69 E-value=2e+02 Score=32.69 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhh
Q 016629 302 VKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQ 366 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (386)
.++....+|+++++.++..+++.++-.-.++..++.|+-..-++ +.-+.+.+++|+.+..++
T Consensus 784 ~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l---~~e~~~~k~~l~~~~~~~ 845 (1174)
T KOG0933|consen 784 NRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEEL---EKEISSLKQQLEQLEKQI 845 (1174)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 34444555666666555555555555555544444444333333 333444445554444433
No 320
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=52.07 E-value=90 Score=28.01 Aligned_cols=36 Identities=25% Similarity=0.238 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
..++...-++|..+..+.++--.+|+++..|.+.|.
T Consensus 139 D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~d 174 (192)
T COG5374 139 DKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLD 174 (192)
T ss_pred hhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666665555555544
No 321
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.55 E-value=1.9e+02 Score=26.22 Aligned_cols=15 Identities=33% Similarity=0.372 Sum_probs=6.7
Q ss_pred HHHHhhhhhhhhHhH
Q 016629 349 AERLKSCEREFQVSI 363 (386)
Q Consensus 349 ~~~~~~~~~~~~~~~ 363 (386)
.++++++-..|+.-|
T Consensus 161 i~~lks~~~~l~~~~ 175 (190)
T PF05266_consen 161 ISRLKSEAEALKEEI 175 (190)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444433
No 322
>smart00338 BRLZ basic region leucin zipper.
Probab=51.52 E-value=55 Score=23.78 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALIN 323 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (386)
|+..++.......+|..++..|+.++..
T Consensus 31 Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 31 LERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 323
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=51.49 E-value=89 Score=27.98 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
..+..++.+++.++..+++-..-+++|+..|++.|
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555555555555555555556665555543
No 324
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=51.47 E-value=74 Score=22.83 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
.||++++.+++..+.+.++-..+..+.+.+|++-+-
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk 38 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKIEENVK 38 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666666555555555555555543
No 325
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=51.40 E-value=1.4e+02 Score=30.93 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 282 SIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINA 324 (386)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~ 324 (386)
-+-..+++++++..+..+-+...++.+.|+++.+.+...+..+
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~a 106 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQA 106 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344456777777777666666667777777666655554433
No 326
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.79 E-value=1.9e+02 Score=26.06 Aligned_cols=13 Identities=8% Similarity=0.105 Sum_probs=5.3
Q ss_pred hhhhhhhHhHhhh
Q 016629 354 SCEREFQVSIFNQ 366 (386)
Q Consensus 354 ~~~~~~~~~~~~~ 366 (386)
.-.++++.++.++
T Consensus 139 ~~~~~~~~~~~~a 151 (188)
T PF03962_consen 139 KLKEEIKIAKEAA 151 (188)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444433
No 327
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=50.66 E-value=90 Score=27.81 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 301 NVKEQLVLDLQKRSKKLEEALINAKKLSS 329 (386)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~~ 329 (386)
.+-+.++++|.+++.+||+....++.|..
T Consensus 123 ~eL~~eI~~L~~~i~~le~~~~~~k~Lrn 151 (171)
T PF04799_consen 123 NELEDEIKQLEKEIQRLEEIQSKSKTLRN 151 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777777777776666543
No 328
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=50.60 E-value=1.2e+02 Score=24.54 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=26.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
.+-.+|.++.+.++.+-..+.+|+-+++ .+..-|+-.+-.|.+.+.||-+.
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k-----------------~qgktL~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQK-----------------AQGKTLQLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555555555544 23333444444555556666544
No 329
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=50.59 E-value=2.1e+02 Score=26.57 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhh
Q 016629 311 QKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQL 367 (386)
Q Consensus 311 ~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (386)
..++..|+..|..+..-...--..+.+|+..+..|.+.-...+.-...++--++..|
T Consensus 175 e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l 231 (237)
T PF00261_consen 175 EEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTL 231 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333344555555555554444444444444444444443
No 330
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=50.56 E-value=1.3e+02 Score=25.86 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=33.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCERE 358 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 358 (386)
+.|.+++..++.++++....+..+.++-. .+.++..++.+.. .++++.++..++.+|....-++.++...
T Consensus 11 ~~L~~~~~~le~~i~~~~~~~k~~~~~~~-~~~A~~~lk~~k~-~~k~~~~~~~~~~~l~~~~~~ie~a~~~ 80 (171)
T PF03357_consen 11 RRLEKQIKRLEKKIKKLEKKAKKAIKKGN-KERAKIYLKRKKR-LEKQLEKLLNQLSNLESVLLQIETAQSN 80 (171)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHCTT--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555665566555555555544444333 2222222222222 3455666666666665555555544443
No 331
>PRK09343 prefoldin subunit beta; Provisional
Probab=50.53 E-value=1.4e+02 Score=24.78 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 016629 303 KEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ 344 (386)
Q Consensus 303 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (386)
+.....+|.++...++..+....+...++++++.+++..|-+
T Consensus 69 ~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ 110 (121)
T PRK09343 69 KTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINE 110 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445666666666666666666666666666666666553
No 332
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=50.44 E-value=2.4e+02 Score=27.09 Aligned_cols=13 Identities=8% Similarity=0.261 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 016629 333 KQLTKLYKCFIQV 345 (386)
Q Consensus 333 ~~~~~l~~~~~~~ 345 (386)
..++.|+..+.++
T Consensus 262 ~~i~~le~el~~l 274 (312)
T PF00038_consen 262 AEIAELEEELAEL 274 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HhhhccchhHHHH
Confidence 4444444444444
No 333
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=49.77 E-value=1.9e+02 Score=30.91 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=14.0
Q ss_pred hhhheeeeeEEEEeeccc
Q 016629 366 QLSFFLHYHVIISVSVPC 383 (386)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~ 383 (386)
.=+||+.+|+-.+-.-|-
T Consensus 502 GDSFyIRtHFE~Eke~P~ 519 (1027)
T KOG3580|consen 502 GDSFYIRTHFECEKETPQ 519 (1027)
T ss_pred CceeEEeeeeeecCCCCc
Confidence 458999999988876663
No 334
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=49.61 E-value=20 Score=29.78 Aligned_cols=45 Identities=11% Similarity=0.269 Sum_probs=25.6
Q ss_pred cHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCCh-hhHHHHHH
Q 016629 52 NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNP-RSAVDAIN 98 (386)
Q Consensus 52 te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~-~~A~~Ai~ 98 (386)
+.+.|.+.|..|..+. +..+.+.. ...|+++|.|... .-...|+.
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~-gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ-GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT-EEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC-CCcEEEEEEECCChHHHHHHHH
Confidence 4578999999999875 44445444 3678999999853 33344443
No 335
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=49.39 E-value=2.2e+02 Score=33.07 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 016629 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (386)
.+++++...++..+...+........++.+|+..+.++.
T Consensus 866 ~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~ 904 (1163)
T COG1196 866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELK 904 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444455555444444443
No 336
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=49.38 E-value=2.4e+02 Score=32.06 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=14.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKK 326 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 326 (386)
..|..++.+++++......-+.+++.||.-+..+..
T Consensus 748 e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~ 783 (1174)
T KOG0933|consen 748 EEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKA 783 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 333333333444444444444444444444444333
No 337
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.34 E-value=1.8e+02 Score=32.20 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
.++..|-.+.-+++.-+|+.++|+-+..+|++++...--.-+++-+++.-|...|-
T Consensus 661 kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 661 KYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45666655666788888888888888888888888877777777777777776665
No 338
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=49.25 E-value=1.1e+02 Score=29.77 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=18.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (386)
+|...|..+++-+.+++..+.+|++++..|+..+
T Consensus 71 ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 71 QLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555444
No 339
>PRK01156 chromosome segregation protein; Provisional
Probab=49.11 E-value=2.2e+02 Score=31.95 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=7.6
Q ss_pred CCCCCCeEEEcC
Q 016629 35 TIDDESSVYVGG 46 (386)
Q Consensus 35 ~~~~~~~lfVgn 46 (386)
...++.++++|.
T Consensus 20 ~f~~gi~~I~G~ 31 (895)
T PRK01156 20 EFDTGINIITGK 31 (895)
T ss_pred ecCCCeEEEECC
Confidence 345567777774
No 340
>PRK00736 hypothetical protein; Provisional
Probab=49.07 E-value=1.1e+02 Score=22.80 Aligned_cols=14 Identities=29% Similarity=0.420 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHHH
Q 016629 329 SHRQKQLTKLYKCF 342 (386)
Q Consensus 329 ~~~~~~~~~l~~~~ 342 (386)
..++.++..|.+.|
T Consensus 36 ~~L~~ql~~L~~rl 49 (68)
T PRK00736 36 EQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344443333
No 341
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=49.01 E-value=1.7e+02 Score=32.41 Aligned_cols=8 Identities=13% Similarity=0.484 Sum_probs=4.1
Q ss_pred CCCeEEEc
Q 016629 38 DESSVYVG 45 (386)
Q Consensus 38 ~~~~lfVg 45 (386)
.+.++||.
T Consensus 213 sg~t~~~e 220 (771)
T TIGR01069 213 SGETFYIE 220 (771)
T ss_pred CCCEEEEE
Confidence 34555554
No 342
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=48.99 E-value=1.5e+02 Score=33.58 Aligned_cols=14 Identities=0% Similarity=0.062 Sum_probs=7.4
Q ss_pred CChhhHHHHHHhcC
Q 016629 88 GNPRSAVDAINDMN 101 (386)
Q Consensus 88 ~~~~~A~~Ai~~l~ 101 (386)
.+.++....+..+.
T Consensus 484 ~~~eD~~lf~~~i~ 497 (1072)
T KOG0979|consen 484 CDSEDYLLFVKKIK 497 (1072)
T ss_pred echHHHHHHHHHhh
Confidence 44566555555443
No 343
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=48.67 E-value=2.2e+02 Score=31.17 Aligned_cols=67 Identities=13% Similarity=0.162 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhhee
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLSFFL 371 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (386)
....+|+.++.++..++....+....++.....|+....+.+...+.+..++..|+.+|+++-..++
T Consensus 103 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~~~~~~l~~il~~~~~~i~ 169 (779)
T PRK11091 103 ELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQQSSLLRSFLDASPDLVY 169 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceEE
Confidence 3345566666666666655555555556666777777777777778888889999999988755443
No 344
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=48.60 E-value=1e+02 Score=27.14 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016629 310 LQKRSKKLEEALINAKKLSSHRQKQLTKLYK 340 (386)
Q Consensus 310 l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~ 340 (386)
|+.+..|+|++.....++-.-.++....|..
T Consensus 34 Lr~EL~KvEeEI~TLrqvL~aKer~~~eLKr 64 (162)
T PF04201_consen 34 LRSELAKVEEEIQTLRQVLAAKERHCAELKR 64 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4444444444444444444444444444443
No 345
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=48.41 E-value=1.2e+02 Score=31.14 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH
Q 016629 316 KLEEALINAKKLSSHRQKQLTK 337 (386)
Q Consensus 316 ~~e~~~~~~~~~~~~~~~~~~~ 337 (386)
.||.+|+...||..-.||+++|
T Consensus 546 slekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 546 SLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666667777777766665
No 346
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=48.14 E-value=2.8e+02 Score=27.17 Aligned_cols=16 Identities=0% Similarity=0.162 Sum_probs=10.0
Q ss_pred CCCCcHHHHHHHhhcC
Q 016629 48 PYSANEDSVRKVFDKY 63 (386)
Q Consensus 48 p~~~te~~L~~~F~~~ 63 (386)
++.++...+..+|.-|
T Consensus 32 ~~~ls~~~~~~~l~y~ 47 (306)
T PF04849_consen 32 RPELSPEQIEETLRYF 47 (306)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4456666776666655
No 347
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.07 E-value=2.3e+02 Score=31.24 Aligned_cols=48 Identities=19% Similarity=0.243 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhhhHHHHHH--HHHHHHHHHHHH-------HHHHHhhhhhhhhHhHh
Q 016629 317 LEEALINAKKLSSHRQKQL--TKLYKCFIQVNE-------YAERLKSCEREFQVSIF 364 (386)
Q Consensus 317 ~e~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 364 (386)
+|...++.+-|..+||.+- .+.+.++.|-.. .|++++..+.+|.+|=+
T Consensus 395 ie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~ 451 (1118)
T KOG1029|consen 395 IERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNF 451 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555666665322 233333333222 47788888888877644
No 348
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=47.88 E-value=85 Score=30.76 Aligned_cols=55 Identities=13% Similarity=0.214 Sum_probs=46.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
.+|+.|++-+++++..+.+--.+.--+..++...+..++-+|-+...|...|-|-
T Consensus 147 YqVDtLKD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~QR 201 (405)
T KOG2010|consen 147 YQVDTLKDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQR 201 (405)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888888888888888889999999999998888888888754
No 349
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=47.87 E-value=1.6e+02 Score=33.54 Aligned_cols=27 Identities=19% Similarity=0.337 Sum_probs=10.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRS 314 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (386)
.+..++..++..++..+..+.+++.+.
T Consensus 688 ~l~~~l~~~~~~~~~~~~~l~~l~~~~ 714 (1179)
T TIGR02168 688 ELEEKIAELEKALAELRKELEELEEEL 714 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333333333333
No 350
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=47.79 E-value=12 Score=39.65 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~ 321 (386)
..+-.||++-.|+-++|
T Consensus 845 ~~~~~~q~~~~qvs~~~ 861 (878)
T KOG1847|consen 845 DNIPYLQNEPSQVSDEL 861 (878)
T ss_pred cCccccccchhhhHHHH
Confidence 44445555555554444
No 351
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=47.78 E-value=2.5e+02 Score=34.52 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=10.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 292 EISHMEERVNVKEQLVLDLQKRSKKL 317 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (386)
++.+|..+++..+..+..++++++.|
T Consensus 1077 El~~l~~k~e~e~~~~~~l~k~i~eL 1102 (1930)
T KOG0161|consen 1077 ELSQLQSKLEDEQAEVAQLQKQIKEL 1102 (1930)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 352
>COG5570 Uncharacterized small protein [Function unknown]
Probab=47.46 E-value=89 Score=22.13 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
-++.+|+++---||.++..+-..-+---..+..|..-=|.+++.-++||+.
T Consensus 5 shl~eL~kkHg~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~ 55 (57)
T COG5570 5 SHLAELEKKHGNLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQ 55 (57)
T ss_pred HHHHHHHHhhchHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 567788888888888888887766666666677777777888888888763
No 353
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=47.18 E-value=1.7e+02 Score=25.56 Aligned_cols=26 Identities=15% Similarity=0.428 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Q 016629 280 DRSIQRREELKKEISHMEERVNVKEQ 305 (386)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (386)
+......+.++.+|......++..+.
T Consensus 23 ~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 23 DKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444555555544444444433
No 354
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=47.13 E-value=1.4e+02 Score=26.80 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 016629 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (386)
.+++.++++|..+..+....+.+.+++|..+++.|..+-
T Consensus 25 q~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~ 63 (188)
T PF10018_consen 25 QENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP 63 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666665544
No 355
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=47.06 E-value=42 Score=24.68 Aligned_cols=21 Identities=14% Similarity=0.403 Sum_probs=16.8
Q ss_pred HHHHHHhhcCCCeEEEEEeeC
Q 016629 54 DSVRKVFDKYGSVVAVKIVND 74 (386)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~~ 74 (386)
.+|+++|+..|.|.-+.|..-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 578999999999987766443
No 356
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=47.01 E-value=2.9e+02 Score=28.91 Aligned_cols=69 Identities=28% Similarity=0.315 Sum_probs=41.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKL-------EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-------e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
++.++..|..-+..-++.++|+|++-+ -..|++.+.---+.++.+..|++.+. +|-+-+--+|-+|+-+
T Consensus 226 ~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyA---E~m~~~~EaeeELk~l 301 (596)
T KOG4360|consen 226 KELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYA---ECMQMLHEAEEELKCL 301 (596)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh
Confidence 334444455555555556666665543 34445555444455566677777766 7777788888888765
No 357
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=46.99 E-value=45 Score=21.38 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=13.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKR 313 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~ 313 (386)
|..+|+++++.+-.=+....+|+.|
T Consensus 2 L~~EI~~Lq~~~a~Gedv~~~LE~K 26 (35)
T PF08182_consen 2 LCAEIDVLQIQLADGEDVCKELEQK 26 (35)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHH
Confidence 5667777775544444444444443
No 358
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=46.89 E-value=1.4e+02 Score=24.31 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=30.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhh
Q 016629 322 INAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQ 366 (386)
Q Consensus 322 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (386)
.+.+.++..+-.|+..|...|.++.+-++-.-.-=..-+.+|.+|
T Consensus 17 ~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~I 61 (103)
T PF08654_consen 17 KQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFRAI 61 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHHHH
Confidence 344556667777778888888888877777666666666554444
No 359
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=46.88 E-value=88 Score=25.84 Aligned_cols=33 Identities=30% Similarity=0.444 Sum_probs=14.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEE 319 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~ 319 (386)
+.|..++..+++++....+.+..|..+.++.++
T Consensus 76 ~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 108 (118)
T PF13815_consen 76 EYLSSQLEQLEERLQELQQEIEKLKQKLKKQKE 108 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333
No 360
>TIGR01280 xseB exodeoxyribonuclease VII, small subunit. This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides.
Probab=46.83 E-value=1.2e+02 Score=22.57 Aligned_cols=30 Identities=7% Similarity=0.111 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 336 TKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
...+....-++.|..+|..+|++++.++..
T Consensus 29 ~lyeeG~~L~k~c~~~L~~ae~kv~~l~~~ 58 (67)
T TIGR01280 29 NLFERGMALARRCEKKLAQAEQRVRKLLKE 58 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666788999999999999988764
No 361
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=46.77 E-value=64 Score=32.99 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=9.2
Q ss_pred HHHHhhhhhhhhHhHhhhhhhee
Q 016629 349 AERLKSCEREFQVSIFNQLSFFL 371 (386)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~ 371 (386)
.++++..|.++..+-..+...+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T PRK05431 79 KEEIKALEAELDELEAELEELLL 101 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444443333333333
No 362
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=46.73 E-value=1.4e+02 Score=23.40 Aligned_cols=25 Identities=16% Similarity=0.427 Sum_probs=14.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQ 311 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~ 311 (386)
-.|+.+|..|+.+++++......|+
T Consensus 11 ~~LeqeV~~Lq~~L~~E~~~r~aLe 35 (88)
T PF14389_consen 11 SALEQEVAELQKQLQEEQDLRRALE 35 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666665555444443
No 363
>PF15456 Uds1: Up-regulated During Septation
Probab=46.55 E-value=1.8e+02 Score=24.49 Aligned_cols=58 Identities=28% Similarity=0.377 Sum_probs=33.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRS-------------------------KKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------------~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
+.|++++..+..+++.-...+. |+.+. .+-|++++...+.+-+...++-+|+.-
T Consensus 25 e~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~l~~~~~~~~~~~~~~~~~~eeel~~~~rk~ee~~~eL~~le~R 103 (124)
T PF15456_consen 25 EELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSRLYSSSSRRARFSRESSLKAEEELAESDRKCEELAQELWKLENR 103 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCccccCCCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4677777777777776666655 55444 333555555555555555555555555
Q ss_pred HHHH
Q 016629 342 FIQV 345 (386)
Q Consensus 342 ~~~~ 345 (386)
+..|
T Consensus 104 ~~~~ 107 (124)
T PF15456_consen 104 LAEV 107 (124)
T ss_pred HHHH
Confidence 5533
No 364
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=46.49 E-value=92 Score=27.33 Aligned_cols=21 Identities=33% Similarity=0.499 Sum_probs=7.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 016629 318 EEALINAKKLSSHRQKQLTKL 338 (386)
Q Consensus 318 e~~~~~~~~~~~~~~~~~~~l 338 (386)
|.+......+..+-++.+.++
T Consensus 104 E~~k~~iR~iR~~~~~~lkk~ 124 (165)
T PF01765_consen 104 EEAKVSIRNIRRDAMKKLKKL 124 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333333333333
No 365
>PRK09039 hypothetical protein; Validated
Probab=46.47 E-value=1.9e+02 Score=28.64 Aligned_cols=29 Identities=24% Similarity=0.300 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016629 311 QKRSKKLEEALINAKKLSSHRQKQLTKLY 339 (386)
Q Consensus 311 ~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 339 (386)
+.+...++.+|.+++..+++-+-++..|.
T Consensus 115 ~~~~~~l~~~L~~~k~~~se~~~~V~~L~ 143 (343)
T PRK09039 115 EGRAGELAQELDSEKQVSARALAQVELLN 143 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 33344445555555555555443333333
No 366
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=46.37 E-value=3.1e+02 Score=28.40 Aligned_cols=56 Identities=14% Similarity=0.000 Sum_probs=28.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
-|+..++.++.+.+..+++..||..++...-+..+..++....-+|--+++++.|-
T Consensus 511 llkva~dnar~qekQiq~Ek~ELkmd~lrerelreslekql~~ErklR~~~qkr~k 566 (641)
T KOG3915|consen 511 LLKVAIDNARAQEKQIQLEKTELKMDFLRERELRESLEKQLAMERKLRAIVQKRLK 566 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554444445555555555555544444444444444444455555554
No 367
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=46.23 E-value=1.9e+02 Score=28.88 Aligned_cols=40 Identities=5% Similarity=0.118 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
+...|..++..+-+.|..++..-.+.+.-++.+-..|.+|
T Consensus 267 qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~I 306 (359)
T PF10498_consen 267 QLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEI 306 (359)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444555555555555555555555555555555554
No 368
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.16 E-value=2.6e+02 Score=26.76 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=14.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALI 322 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 322 (386)
.+..++..++..++.-......|..|+.+-..+|+
T Consensus 173 ~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELE 207 (267)
T PF10234_consen 173 AVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELE 207 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433333333
No 369
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=45.99 E-value=58 Score=32.20 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhh
Q 016629 334 QLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQL 367 (386)
Q Consensus 334 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (386)
++.++..+|. .||+.+++.....|++||.|.+
T Consensus 202 ~iE~~~~~~~--~ey~~Rr~ll~sRL~vTVqSF~ 233 (465)
T KOG3973|consen 202 EIEKQCESFS--REYYNRRLLLNSRLKVTVQSFL 233 (465)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777777 8999999999999999998753
No 370
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=45.79 E-value=83 Score=36.11 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=37.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALIN-------AKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
.|.+|-..+++.+.++.++.....++|..|.. +.+--..+|+.+.+|.+.+.+|.+-.+++|.+.
T Consensus 1226 ~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sd 1297 (1758)
T KOG0994|consen 1226 DIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESD 1297 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 34444444555555555555555555555442 233334677777777777777777777777654
No 371
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=45.71 E-value=2.8e+02 Score=27.40 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.1
Q ss_pred heeeeeEEEEeecccc
Q 016629 369 FFLHYHVIISVSVPCC 384 (386)
Q Consensus 369 ~~~~~~~~~~~~~~~~ 384 (386)
.||..+.- .|||.++
T Consensus 97 lyL~liLG-nVNVsll 111 (330)
T PF07851_consen 97 LYLRLILG-NVNVSLL 111 (330)
T ss_pred cccceecc-cccceec
Confidence 34555554 6666654
No 372
>PRK02224 chromosome segregation protein; Provisional
Probab=45.59 E-value=3e+02 Score=30.66 Aligned_cols=7 Identities=14% Similarity=0.230 Sum_probs=3.4
Q ss_pred eEEEcCC
Q 016629 41 SVYVGGL 47 (386)
Q Consensus 41 ~lfVgnL 47 (386)
.|.|.|+
T Consensus 5 ~l~l~nf 11 (880)
T PRK02224 5 RVRLENF 11 (880)
T ss_pred EEEEECc
Confidence 4455554
No 373
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=45.54 E-value=1.5e+02 Score=28.42 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=39.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
+++-..+...+..+ .+++.++.-||.+.+.....+.++++++.+|-..|.+.
T Consensus 204 ~A~~kSR~~~k~~~-~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 204 EAVRKSRDKRKQKE-DEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33334444444333 78888999999999999999999999999998888853
No 374
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=45.40 E-value=2.7e+02 Score=32.19 Aligned_cols=49 Identities=12% Similarity=-0.001 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 297 EERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
++.+.-....+.+...+.+-.|.+|.-..+.-...++++..|++.|++.
T Consensus 485 ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~ 533 (1293)
T KOG0996|consen 485 EKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLAS 533 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444445555555555555555555555555553
No 375
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=45.36 E-value=3.1e+02 Score=26.89 Aligned_cols=46 Identities=28% Similarity=0.278 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 307 VLDLQKRSKKLEEALIN-AKKLSSHRQKQLTKLYKCFIQVNEYAERL 352 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 352 (386)
+..|+.+--.||..|+. ..-++..+|+++.+|++....++.+-++|
T Consensus 115 l~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~L 161 (310)
T PF09755_consen 115 LNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERL 161 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 33333333344444444 22345556666666655444343333333
No 376
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=45.24 E-value=1.3e+02 Score=26.70 Aligned_cols=58 Identities=24% Similarity=0.200 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhhhHh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ---VNEYAERLKSCEREFQVS 362 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~ 362 (386)
++..+-+...+++.-.|..++++.|+-||...|+--..-. -++-++-....|+.|-.|
T Consensus 96 Lqe~~A~e~~~~~~~~lleAkk~asqYQkEAeKCnsgmeTCEeAREkaEa~L~~e~Kltal 156 (176)
T PF06364_consen 96 LQEAVANENQRRADMALLEAKKMASQYQKEAEKCNSGMETCEEAREKAEAALVEERKLTAL 156 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566778889999999999999999886433222 233344444445555443
No 377
>PRK10869 recombination and repair protein; Provisional
Probab=45.22 E-value=1e+02 Score=32.64 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=14.1
Q ss_pred hhhhHhHhhhhhheeeeeEEEEeec
Q 016629 357 REFQVSIFNQLSFFLHYHVIISVSV 381 (386)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (386)
..|...|...|+.|-.-|..+.|.+
T Consensus 373 ~~l~~~v~~~L~~L~m~~a~f~v~~ 397 (553)
T PRK10869 373 KELAQLITESMHELSMPHGKFTIDV 397 (553)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEE
Confidence 3444555556666666566555554
No 378
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=45.15 E-value=1.5e+02 Score=26.37 Aligned_cols=59 Identities=29% Similarity=0.358 Sum_probs=30.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKS 354 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 354 (386)
.|.-.|.-+++++.++++++.....+++.|-..|.. -+.|+..++|.+.. ..|.+||++
T Consensus 83 ~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~-----eemQe~i~~L~kev---~~~~erl~~ 141 (201)
T KOG4603|consen 83 VLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT-----EEMQEEIQELKKEV---AGYRERLKN 141 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh-----HHHHHHHHHHHHHH---HHHHHHHHH
Confidence 444555555566666666665555555555444332 24555555555543 344455443
No 379
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=45.10 E-value=41 Score=32.45 Aligned_cols=78 Identities=14% Similarity=0.244 Sum_probs=57.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCC--------CCCCceEEEEEeCChhhHHHHHHh----cC--Cce
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR--------STRGKCYGFVTFGNPRSAVDAIND----MN--GRT 104 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~--------~~~~kG~aFVeF~~~~~A~~Ai~~----l~--g~~ 104 (386)
.+.|.+.|+...++--.+...|.+||+|..|.++.+. ..+......+.|-+.+.|...... |. .+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 4567788999999888889999999999999998876 123456788999998888766432 21 123
Q ss_pred eccEEEEEEeec
Q 016629 105 IDGRVVRVSEVA 116 (386)
Q Consensus 105 i~Gr~L~V~~a~ 116 (386)
+.-..|.|.|+.
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 456677777765
No 380
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=45.06 E-value=2.5e+02 Score=31.01 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKL 317 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~ 317 (386)
..+..+++.++|+|.+.++|
T Consensus 486 sei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 486 SEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555544
No 381
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=45.01 E-value=2.9e+02 Score=31.51 Aligned_cols=9 Identities=33% Similarity=0.375 Sum_probs=5.0
Q ss_pred CCCCeEEEc
Q 016629 37 DDESSVYVG 45 (386)
Q Consensus 37 ~~~~~lfVg 45 (386)
.++.+++||
T Consensus 22 ~~~~~~i~G 30 (1179)
T TIGR02168 22 DKGITGIVG 30 (1179)
T ss_pred cCCcEEEEC
Confidence 345566665
No 382
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=44.80 E-value=2.9e+02 Score=30.19 Aligned_cols=18 Identities=33% Similarity=0.490 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhHHHHH
Q 016629 282 SIQRREELKKEISHMEER 299 (386)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~ 299 (386)
..|..+-|.++.+.|++.
T Consensus 494 ~~q~~k~L~~ek~~l~~~ 511 (698)
T KOG0978|consen 494 ANQKHKLLREEKSKLEEQ 511 (698)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 383
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=44.51 E-value=24 Score=31.87 Aligned_cols=64 Identities=20% Similarity=0.432 Sum_probs=44.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHH
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAIN 98 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~ 98 (386)
.......+++++++..++...+...|..+|.+..+.+...... ....+.++.+.....+..++.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 3456789999999999999999999999999977776655444 344444544444444444433
No 384
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=44.49 E-value=1e+02 Score=31.75 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=18.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQK 312 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (386)
..|+.++..+++.+++-++.+..|++
T Consensus 337 ~~l~~~~~~~~~~l~~l~~~l~~l~~ 362 (451)
T PF03961_consen 337 EELEEELEELKEELEKLKKNLKKLKK 362 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 46777777777777777777766666
No 385
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=44.31 E-value=1.4e+02 Score=26.71 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 016629 328 SSHRQKQLTKLYKCFI 343 (386)
Q Consensus 328 ~~~~~~~~~~l~~~~~ 343 (386)
..+.+.++++|++.+.
T Consensus 155 ~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 155 REELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 386
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=44.30 E-value=2e+02 Score=30.56 Aligned_cols=47 Identities=17% Similarity=0.122 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERL 352 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 352 (386)
.+.+|--+...|-++|+++++....+|.+.++||..|-.|+..+..+
T Consensus 330 kVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 330 KVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666666666666666666666666665544433
No 387
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=44.17 E-value=1.9e+02 Score=24.15 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 299 RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
++..--.+-..|.++.+.|....+...+.+.+.-..+.++.++|--|=|..+=.++.|++|.++...
T Consensus 41 ~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveNWa~~iE~Dl~~i~~~ 107 (121)
T PF06320_consen 41 RVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVENWAEMIERDLRVIEET 107 (121)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666666666666666666666677777777777777778899999887764
No 388
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=44.02 E-value=1.5e+02 Score=28.26 Aligned_cols=21 Identities=10% Similarity=0.110 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhhhhhhhhHh
Q 016629 342 FIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~ 362 (386)
..++....+.+.+.+.+|+.+
T Consensus 108 ~~~~~~~~~~l~~~~~~l~~~ 128 (322)
T TIGR01730 108 KAAVEAAQADLEAAKASLASA 128 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555555555444
No 389
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=43.67 E-value=3.6e+02 Score=29.37 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=49.3
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNE 347 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 347 (386)
+.++..+..+.-.++.+.+.+.+||.+.+.|.....+..+.++....++.+|+..+-.|+-
T Consensus 590 k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk 650 (786)
T PF05483_consen 590 KILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKK 650 (786)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566667777778888999999999999999888888888888888888888877776543
No 390
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=43.61 E-value=40 Score=32.39 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=36.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeE-EEEEeeCCCCCCceEEEEEeCChh
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRSTRGKCYGFVTFGNPR 91 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~~~~~~~kG~aFVeF~~~~ 91 (386)
-.+-|||+|||.++.-.+|...+.+.|-+- .+.+.. ..|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg-----~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG-----HFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEeeec-----CCcceeEecCCcc
Confidence 346799999999999999999998887543 222211 4568999997643
No 391
>PRK10869 recombination and repair protein; Provisional
Probab=43.60 E-value=2.2e+02 Score=30.24 Aligned_cols=42 Identities=26% Similarity=0.239 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 302 VKEQLVLDLQKRSKKL-EEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
..+..+.+|+.+..++ +..+..+.+|+..|++...+|++.+.
T Consensus 338 ~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~ 380 (553)
T PRK10869 338 DQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLIT 380 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666 34445566777777777777777665
No 392
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=43.36 E-value=1.3e+02 Score=32.45 Aligned_cols=58 Identities=24% Similarity=0.237 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 302 VKEQLVLDLQKRSKKL-------EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~-------e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
+.++.+.|||+.+-+| ++.|.....+..++++++.+|+..+-.+ .++++.-..+++.+
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~---~e~le~K~qE~~~L 228 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNL---KEKLELKSQEAQSL 228 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHH
Confidence 3455567777766665 3444555555556667777777777666 45555555555554
No 393
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=42.96 E-value=1e+02 Score=27.13 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
...|+++.+.|+.++...++-..++++++.+|++.+..+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666555555555555555555555544443
No 394
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=42.95 E-value=4.1e+02 Score=27.74 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=9.1
Q ss_pred HHHHHHHhhhhhhhhHhHh
Q 016629 346 NEYAERLKSCEREFQVSIF 364 (386)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~ 364 (386)
.+..+++...+++|..+-.
T Consensus 155 ~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 155 RELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3334445555555554443
No 395
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=42.78 E-value=2.6e+02 Score=30.38 Aligned_cols=39 Identities=10% Similarity=0.185 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALI 322 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 322 (386)
..++.+...+..+++......+.+-+++++.+.|..+-.
T Consensus 123 ~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~ 161 (716)
T KOG4593|consen 123 KLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRN 161 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444554433333444444444444433333
No 396
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=42.65 E-value=3.8e+02 Score=31.45 Aligned_cols=77 Identities=19% Similarity=0.163 Sum_probs=57.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 016629 291 KEISHMEERVNVKEQLVLDLQK-------RSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~-------~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (386)
.++..+.++.+...+.+.+.+. ++..+|.++....+.....-+.+..|++.+.+|+.....++.+..+.+.+-
T Consensus 209 ~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l~ 288 (1294)
T KOG0962|consen 209 EHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRLR 288 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555544 455677788888888888889999999999999999999999998888776
Q ss_pred hhhh
Q 016629 364 FNQL 367 (386)
Q Consensus 364 ~~~~ 367 (386)
..+.
T Consensus 289 ~~i~ 292 (1294)
T KOG0962|consen 289 EKIL 292 (1294)
T ss_pred hhcc
Confidence 6554
No 397
>PRK10698 phage shock protein PspA; Provisional
Probab=42.52 E-value=2.8e+02 Score=25.64 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 314 SKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 314 ~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
+..|+.++.........++..+.+|+.-|.
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~ 130 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLS 130 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433333
No 398
>PRK00977 exodeoxyribonuclease VII small subunit; Provisional
Probab=42.36 E-value=1.3e+02 Score=23.14 Aligned_cols=31 Identities=6% Similarity=0.088 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhHhHhhhh
Q 016629 337 KLYKCFIQVNEYAERLKSCEREFQVSIFNQL 367 (386)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (386)
..+.+..-++.|..+|..+|++++.++....
T Consensus 39 lyeeg~~L~k~C~~~L~~ae~ki~~l~~~~~ 69 (80)
T PRK00977 39 AFERGVALARQCQKKLQQAEQRVEKLLDEDG 69 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3445566678899999999999999987644
No 399
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=42.34 E-value=85 Score=32.03 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHhHhhhhhheeeeeEEEEeeccc
Q 016629 340 KCFIQVNEYAERLKSCEREFQVSIFNQLSFFLHYHVIISVSVPC 383 (386)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (386)
....++++..++++..|.+++.+-..+...+++.=-|+.-+||.
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~ 116 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPV 116 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 33344555566666666666666665555555544444444443
No 400
>COG1315 Uncharacterized conserved protein [Function unknown]
Probab=42.20 E-value=1.3e+02 Score=31.45 Aligned_cols=80 Identities=24% Similarity=0.261 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016629 281 RSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (386)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (386)
..+...+.|.++++..|++++...+++..|++-. ...+...|-..---+++.++..+++|.+.-++.+-.-..||
T Consensus 407 e~~~~l~~lt~~~~~~ee~l~~Lt~~l~~l~~~~-----i~~~~~~l~~dk~~~~~~vnn~ki~l~~~ieki~~~l~~lq 481 (543)
T COG1315 407 EIVERLKELTEEISLHEERLKKLTKLLVALVKVK-----IESKKNILPPDKESLLTAVNNTKITLRNSIEKIKAELEGLQ 481 (543)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhcCCCCCCcHHHHHhhhhhhccHHHHHHHHHHHHHHHH
Confidence 4445666888899888888888888888887741 11222233333335566666667666666555555444444
Q ss_pred HhHhh
Q 016629 361 VSIFN 365 (386)
Q Consensus 361 ~~~~~ 365 (386)
.-+..
T Consensus 482 e~le~ 486 (543)
T COG1315 482 EELEV 486 (543)
T ss_pred HHHhh
Confidence 44443
No 401
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=41.97 E-value=2.4e+02 Score=24.62 Aligned_cols=25 Identities=20% Similarity=0.413 Sum_probs=11.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Q 016629 290 KKEISHMEERVNVKEQLVLDLQKRS 314 (386)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (386)
..++..++.+++.....+..|++..
T Consensus 26 ~~e~~~~k~ql~~~d~~i~~Lk~~~ 50 (155)
T PF06810_consen 26 KEERDNLKTQLKEADKQIKDLKKSA 50 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444444444444444433
No 402
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=41.74 E-value=1.5e+02 Score=24.05 Aligned_cols=8 Identities=0% Similarity=0.044 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 016629 275 QVKELDRS 282 (386)
Q Consensus 275 ~~~~~~~~ 282 (386)
...+-|++
T Consensus 53 ~f~krE~A 60 (100)
T PF04568_consen 53 AFGKREAA 60 (100)
T ss_dssp HHHHHHHH
T ss_pred ccchHHHh
Confidence 33344443
No 403
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=41.39 E-value=1.9e+02 Score=30.79 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=44.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
..-+.+...|.+|.+.++.+-.-.....+....+.+.+..+.....++...+..|...|.
T Consensus 278 ~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~ 337 (560)
T PF06160_consen 278 EENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYT 337 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344567777777777777777777777777777888888777777777777777766553
No 404
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=41.39 E-value=2.6e+02 Score=29.25 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhhhhhhHh
Q 016629 343 IQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~ 362 (386)
.++.+.+.++...+++|+.+
T Consensus 145 ~~~~~~~~~~~~~~~~l~~l 164 (525)
T TIGR02231 145 TEDREAERRIRELEKQLSEL 164 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555
No 405
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=41.36 E-value=1.8e+02 Score=31.22 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=6.0
Q ss_pred HHHHHHhHHHHH
Q 016629 288 ELKKEISHMEER 299 (386)
Q Consensus 288 ~~~~~~~~~~~~ 299 (386)
.+..+|..+++.
T Consensus 339 ~l~~~i~~~~~~ 350 (594)
T PF05667_consen 339 ELESQIEELEAE 350 (594)
T ss_pred HHHHHHHHHHHH
Confidence 455555555543
No 406
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.04 E-value=3e+02 Score=26.64 Aligned_cols=59 Identities=15% Similarity=0.239 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
.+.+..|++++.++-++++.+++ ++=..|.-|...+.|+...-+++.+.=.-++.+|-|
T Consensus 135 ~~~~~~l~~~va~v~q~~~~qq~---Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln 193 (300)
T KOG2629|consen 135 AKSLNALMDEVAQVSQLLATQQS---ELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLN 193 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 34444444444444444444333 333444555555555555555555554444444433
No 407
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=40.93 E-value=1.3e+02 Score=30.38 Aligned_cols=47 Identities=26% Similarity=0.240 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAK---KLSSHRQKQLTKLYKCFIQ 344 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~---~~~~~~~~~~~~l~~~~~~ 344 (386)
+-++..++.+..|++++.+|++.+++.. +...+.++++..|++.+.+
T Consensus 242 ~~~~~l~~~~~~~~~~i~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~ 291 (406)
T PF02388_consen 242 EYLESLQEKLEKLEKEIEKLEEKLEKNPKKKNKLKELEEQLASLEKRIEE 291 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH
Confidence 3466667777778888888887766544 2333334444444444443
No 408
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=40.85 E-value=1.2e+02 Score=23.71 Aligned_cols=19 Identities=32% Similarity=0.431 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016629 302 VKEQLVLDLQKRSKKLEEA 320 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~e~~ 320 (386)
+-...+.++|.+++.||.+
T Consensus 12 K~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 12 KTKEKIAELQARLKELEAQ 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444333
No 409
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=40.71 E-value=3.3e+02 Score=25.91 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 301 NVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
++++....+--+.+.+||+.+..++-..-++||.+.+|+.+=.
T Consensus 80 ek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaND 122 (333)
T KOG1853|consen 80 EKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQAND 122 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455556677888999999999999999999999887643
No 410
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=40.70 E-value=3e+02 Score=28.08 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLY 339 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 339 (386)
..+.+++..+.+||++..+|-++.....--...+-.+++.++
T Consensus 48 a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~e 89 (459)
T KOG0288|consen 48 AKLQEKELELNRLQEENTQLNEERVREEATEKTLTVDVLIAE 89 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777788888888874444443333333333333333
No 411
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=40.67 E-value=3.1e+02 Score=29.15 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016629 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLY 339 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 339 (386)
.+++.+...+.+.+...++-....+..+..|.
T Consensus 379 sel~e~leel~e~leeie~eq~ei~e~l~~Lr 410 (569)
T PRK04778 379 SELQEELEEILKQLEEIEKEQEKLSEMLQGLR 410 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 412
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=40.62 E-value=2.3e+02 Score=25.30 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHH-HHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAK-KLSSHRQ-KQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~-~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
++++-.+.+...|..++..||..+..+. ++++|.- .-=..+++.+.+|+...+++.-.|
T Consensus 85 ~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 85 VDFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777766665544 4444433 223455555555555555555433
No 413
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=40.59 E-value=1.6e+02 Score=24.15 Aligned_cols=29 Identities=17% Similarity=0.311 Sum_probs=13.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (386)
+=.+|+.|++++..--.++.+|++.+..|
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l 34 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQEL 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555544444444444444444443
No 414
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=40.40 E-value=2.6e+02 Score=24.66 Aligned_cols=28 Identities=21% Similarity=0.089 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 316 KLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 316 ~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
.++.+....+.-...+|.++..|++.+-
T Consensus 101 ~~~~e~~~l~~e~~~l~~~~e~Le~e~~ 128 (161)
T TIGR02894 101 ALQKENERLKNQNESLQKRNEELEKELE 128 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 415
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=40.31 E-value=2e+02 Score=23.30 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
..+|.++...||..+....+-..++++++.+|++.|
T Consensus 69 ~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l 104 (110)
T TIGR02338 69 IQELKEKKETLELRVKTLQRQEERLREQLKELQEKI 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444443
No 416
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=40.24 E-value=1.3e+02 Score=24.60 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 314 SKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 314 ~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
+..|..+++-+++|...+.-++.-++++|.
T Consensus 44 i~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~ 73 (106)
T PF11594_consen 44 INELKEELQRKEQLLQKHYEKIDYWEKLLS 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433
No 417
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=40.06 E-value=2.4e+02 Score=25.81 Aligned_cols=6 Identities=33% Similarity=0.296 Sum_probs=2.1
Q ss_pred HHHHHH
Q 016629 335 LTKLYK 340 (386)
Q Consensus 335 ~~~l~~ 340 (386)
+.+|+.
T Consensus 89 l~~le~ 94 (202)
T PF06818_consen 89 LGQLEA 94 (202)
T ss_pred hhhhHH
Confidence 333333
No 418
>PF13166 AAA_13: AAA domain
Probab=39.84 E-value=3.6e+02 Score=29.23 Aligned_cols=18 Identities=11% Similarity=-0.009 Sum_probs=8.6
Q ss_pred HhHhhhhhheeeeeEEEE
Q 016629 361 VSIFNQLSFFLHYHVIIS 378 (386)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~ 378 (386)
-.|+..|..|-+.|+-|+
T Consensus 462 ~~iN~~L~~~g~~~~~l~ 479 (712)
T PF13166_consen 462 DRINEELKRLGFSNFSLE 479 (712)
T ss_pred HHHHHHHHHhCCCCeEEE
Confidence 345555555543444443
No 419
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.76 E-value=95 Score=25.22 Aligned_cols=33 Identities=30% Similarity=0.379 Sum_probs=14.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEA 320 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (386)
.+++.+..|++.++..++....|++++..++..
T Consensus 71 ~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 71 ELKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444333
No 420
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=39.65 E-value=2.1e+02 Score=23.38 Aligned_cols=30 Identities=13% Similarity=0.361 Sum_probs=15.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (386)
.++.+|.+|.+.+.+.++.+.+|..+...|
T Consensus 12 ~le~~l~~l~~~~~~LK~~~~~l~EEN~~L 41 (107)
T PF06156_consen 12 QLEQQLGQLLEELEELKKQLQELLEENARL 41 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555444
No 421
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=39.60 E-value=26 Score=36.33 Aligned_cols=28 Identities=18% Similarity=0.195 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYK 340 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~ 340 (386)
++++|++++++|+.++. +.+++|.|.|+
T Consensus 32 kie~L~kql~~Lk~q~~-------~l~~~v~k~e~ 59 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQD-------DLNDRVDKVEK 59 (489)
T ss_pred HHHHHHHHHHHHHHhhc-------ccccccchhhH
Confidence 55555555555554444 44444555444
No 422
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=39.58 E-value=2.4e+02 Score=31.34 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016629 279 LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCERE 358 (386)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 358 (386)
++--..-....++.-..||.++.+..+.+..+.-+...|-..|+.+.++..++.......+..|..+ ..+|-++|++
T Consensus 73 ~~~~~~~s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l---~~~l~~~eke 149 (769)
T PF05911_consen 73 HEAVAKKSKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDL---MARLESTEKE 149 (769)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHH
Q ss_pred hhHhHhhhhhheee
Q 016629 359 FQVSIFNQLSFFLH 372 (386)
Q Consensus 359 ~~~~~~~~~~~~~~ 372 (386)
++.|+|=||
T Consensus 150 -----n~~Lkye~~ 158 (769)
T PF05911_consen 150 -----NSSLKYELH 158 (769)
T ss_pred -----HHHHHHHHH
No 423
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=39.44 E-value=3.1e+02 Score=25.74 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=12.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 293 ISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (386)
+..|++.+...+.....|+.+...++...
T Consensus 35 a~~Leek~k~aeeea~~Le~k~~eaee~~ 63 (246)
T PF00769_consen 35 AEELEEKLKQAEEEAEELEQKRQEAEEEK 63 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444555444444433
No 424
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=39.01 E-value=3.4e+02 Score=26.05 Aligned_cols=63 Identities=16% Similarity=0.188 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHh
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ---KQLTKLYKCFIQVNEYAERLKSCEREFQVSIF 364 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (386)
+++..--..+..+.+..+.+.+.+..+.......+ ..+.+|...|.+|+ -+..++..+|.+|.
T Consensus 74 ~~l~~a~~~~~~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~----~v~~~~~~l~~ll~ 139 (291)
T PF10475_consen 74 DELEEALVICKNLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIK----TVQQTQSRLQELLE 139 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHh
Confidence 34444445555555566666555444333222222 23345555555543 23444555555544
No 425
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=38.78 E-value=1.5e+02 Score=24.83 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Q 016629 316 KLEEALINAKKLSSHRQKQLTKLY 339 (386)
Q Consensus 316 ~~e~~~~~~~~~~~~~~~~~~~l~ 339 (386)
.-|.....++|...+..++..+++
T Consensus 35 ~~e~lEsiAAKIIkDisdkIdkCe 58 (121)
T PF03310_consen 35 DQENLESIAAKIIKDISDKIDKCE 58 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-T
T ss_pred hHHHHHHHHHHHHHHHHHHHHhch
Confidence 345667778888888887777774
No 426
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=38.76 E-value=57 Score=28.07 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 332 QKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 332 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
|++-+||..+|-.| -.|-+-|.+|||.+|.+
T Consensus 76 q~kK~KLl~mL~eV---d~RY~qY~~Qmq~Vvss 106 (140)
T PF07526_consen 76 QRKKAKLLSMLDEV---DRRYRQYYDQMQAVVSS 106 (140)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 33445666666655 67777788888887765
No 427
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=38.75 E-value=1.7e+02 Score=31.50 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016629 302 VKEQLVLDLQKRSKKLEEALIN 323 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~e~~~~~ 323 (386)
.-++.+.+|+.+...||.+++.
T Consensus 567 ~~e~~i~~le~~~~~l~~~l~~ 588 (638)
T PRK10636 567 RLEKEMEKLNAQLAQAEEKLGD 588 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3345555555555666555543
No 428
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.52 E-value=1.7e+02 Score=22.09 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=28.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
.+|+++-+.-+........+-.-+++|-.......+-.....+++.+++..+..+
T Consensus 12 e~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 12 EQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666544444444444444455554444444455555555556665555544
No 429
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=38.50 E-value=2.6e+02 Score=29.73 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 281 RSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
+.+..+..+...+++.=-++| ....+|+.++.++--..++.+++..+.|..|..|+...-|-
T Consensus 79 r~~~e~~RI~~sVs~EL~ele---~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELE---VKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 334444555555544333333 33445677777777777777777777777777777766644
No 430
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=38.50 E-value=1.2e+02 Score=25.44 Aligned_cols=41 Identities=15% Similarity=0.226 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 316 KLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 316 ~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
.|+.++...+.|...++..+.+|+..+..++.+-+.++...
T Consensus 5 ~m~~Ll~~E~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~ 45 (134)
T PF08336_consen 5 DMEKLLELEEELISNLRNYIEELQEKLDTLKRFLDEMKREH 45 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555555554444444444444333
No 431
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=38.42 E-value=4e+02 Score=28.33 Aligned_cols=18 Identities=17% Similarity=0.178 Sum_probs=8.0
Q ss_pred eEEEEEeCChhhHHHHHH
Q 016629 81 CYGFVTFGNPRSAVDAIN 98 (386)
Q Consensus 81 G~aFVeF~~~~~A~~Ai~ 98 (386)
|..-+.+..++++..+|.
T Consensus 172 G~t~~~v~s~d~v~~~i~ 189 (607)
T KOG0240|consen 172 GVTERFVSSPDEVLDVID 189 (607)
T ss_pred CceeEEecCHHHHHHHHh
Confidence 343344444455444444
No 432
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.41 E-value=79 Score=31.89 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=46.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCe-EEEEEeeCCCCCCceEEEEEeCChhhHHHHHHh
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSV-VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~ 99 (386)
+.+-...|=|.++|...-.++|...|+.|+.- ..|.++.+ ..||-.|.+...|..|+..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 34446688889999998888999999999743 34555544 3799999999999999883
No 433
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=38.41 E-value=72 Score=23.99 Aligned_cols=60 Identities=17% Similarity=0.205 Sum_probs=41.5
Q ss_pred HHHHHHhhcCC-CeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 54 DSVRKVFDKYG-SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 54 ~~L~~~F~~~G-~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
.+|.+.|...| .+..|.-+....+ .+-..-||+.....+... .|+=+.++|.++.|+-..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 35777888888 6778888877776 455566788776554444 355567889998887443
No 434
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=38.15 E-value=3.5e+02 Score=28.54 Aligned_cols=76 Identities=28% Similarity=0.326 Sum_probs=42.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (386)
.+.+.+..+.+.++++.+--++||..+.-++..|..-++---+-|.-|+-|.+-=++-++..+++++.=.+++-.+
T Consensus 358 el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~eikR~m 433 (570)
T COG4477 358 ELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEIKRYM 433 (570)
T ss_pred HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555555566666666666666665555555555566666655555555555555544444333
No 435
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=38.08 E-value=3.2e+02 Score=24.98 Aligned_cols=31 Identities=23% Similarity=0.069 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhHh
Q 016629 334 QLTKLYKCFIQVNEYAERLKSCEREFQVSIF 364 (386)
Q Consensus 334 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (386)
.|.+|++....+.+-++..+.-...++..++
T Consensus 166 sVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 166 RVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444433333333333333333333
No 436
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=38.04 E-value=1.5e+02 Score=28.83 Aligned_cols=49 Identities=12% Similarity=0.112 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhh
Q 016629 315 KKLEEALINAKKLS---SHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQ 366 (386)
Q Consensus 315 ~~~e~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (386)
..|.+.+.....+. .+.+..+..|..+|... ..+=.==|.+|.-++...
T Consensus 34 ~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~---k~rG~wGE~~Le~iLe~~ 85 (304)
T PF02646_consen 34 GSLKEQLKQLSEANGEIQQLSQEASNLTSALKNS---KTRGNWGEMQLERILEDS 85 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCC---CchhhHHHHHHHHHHHHc
Confidence 33545554444444 55566666666666511 111122355555555553
No 437
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=37.98 E-value=2.9e+02 Score=30.35 Aligned_cols=58 Identities=22% Similarity=0.275 Sum_probs=39.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEY 348 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 348 (386)
.++..|.+++..-++...+-+.++..||..|.++..+..+.|..|.-.++.|+.|-+.
T Consensus 398 ~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEe 455 (717)
T PF09730_consen 398 SEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEE 455 (717)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444455888999999999999999998888888887776443
No 438
>PLN02320 seryl-tRNA synthetase
Probab=37.98 E-value=94 Score=32.58 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhHhHhhhhhheeeeeEEEEeeccc
Q 016629 341 CFIQVNEYAERLKSCEREFQVSIFNQLSFFLHYHVIISVSVPC 383 (386)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (386)
...++++..++++..|.+++.+-..+...+|..=-|+.-+||.
T Consensus 135 l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~ 177 (502)
T PLN02320 135 LVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPV 177 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCC
Confidence 3334555566666666666666555555555555555555554
No 439
>PHA00276 phage lambda Rz-like lysis protein
Probab=37.94 E-value=1.1e+02 Score=26.45 Aligned_cols=58 Identities=16% Similarity=0.172 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
..-.|+.++....+...++...+..+.|+.+.-.+....+| -+.+.+-.+.|++=+..
T Consensus 35 ~~~~e~~~~~~a~~~~QqaVaal~~~yqkEladaK~~~DrL---iadlRsGn~RLqvr~~a 92 (144)
T PHA00276 35 EVQNEYVKKVEATADTQAAINAVSKEYQEDLAALEGSTDRV---IADLRSDNKRLRVRLKP 92 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHcCCceEEeeeec
Confidence 44556778888888888999999999999999999988887 77788888888775544
No 440
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=37.90 E-value=1.8e+02 Score=23.56 Aligned_cols=10 Identities=10% Similarity=0.494 Sum_probs=3.8
Q ss_pred HHHHhHHHHH
Q 016629 290 KKEISHMEER 299 (386)
Q Consensus 290 ~~~~~~~~~~ 299 (386)
...++.+|.+
T Consensus 48 ~~Rl~~lE~~ 57 (106)
T PF10805_consen 48 DRRLQALETK 57 (106)
T ss_pred HHHHHHHHHH
Confidence 3333334433
No 441
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=37.81 E-value=3.6e+02 Score=25.81 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=33.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 016629 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (386)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (386)
+..+..+++........|+.++..|-..+..+......++.++.-|.+.|.-++
T Consensus 84 ~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 84 LEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 333334455555666666666666666666666666677777777776665443
No 442
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=37.75 E-value=80 Score=23.54 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=40.9
Q ss_pred HHHHHHhhcCC-CeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 54 DSVRKVFDKYG-SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 54 ~~L~~~F~~~G-~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
++|.+.|...| .|..|.-+....+ .+...-||+.+...+...+ ++=..+++..|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCC
Confidence 35666777776 6777777776645 5666788888876664443 45567888888887554
No 443
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=37.63 E-value=3.4e+02 Score=29.60 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 016629 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLT 336 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~ 336 (386)
..+.++..-+.++..++.+...+..-...+..++.+.+.|+=+..|+++|-.+++..|.
T Consensus 38 ~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~ 96 (701)
T PF09763_consen 38 YLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLD 96 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHH
Confidence 34555566666777777777777777777777777777777777777777777774333
No 444
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=37.26 E-value=2e+02 Score=22.52 Aligned_cols=35 Identities=29% Similarity=0.351 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
...|.++...++..+...++...+.++++.+|++.
T Consensus 64 ~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 64 IEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444433
No 445
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=37.21 E-value=3.2e+02 Score=24.78 Aligned_cols=69 Identities=20% Similarity=0.224 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhh
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSS-----HRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQ 366 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (386)
+.+-.-+..+.+...+..++.+.+....+|+. ++.+-..+|...=..+.+...+....+++|+++-.+.
T Consensus 82 ~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~ 155 (194)
T PF15619_consen 82 EQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSF 155 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444445555555555666665555554 2334445555555555666778888888888776553
No 446
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=37.20 E-value=3.9e+02 Score=25.76 Aligned_cols=35 Identities=26% Similarity=0.354 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 331 RQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
.||...||...+..+++..++.+..|.-|-+.+-+
T Consensus 395 kqkeeeklk~e~qkikeleek~~eeedal~~all~ 429 (445)
T KOG2891|consen 395 KQKEEEKLKAEEQKIKELEEKIKEEEDALLLALLN 429 (445)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788888888888888888888777766554433
No 447
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=37.19 E-value=5.3e+02 Score=27.29 Aligned_cols=29 Identities=24% Similarity=0.322 Sum_probs=15.2
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 324 AKKLSSHRQKQLTKLYKCFIQVNEYAERL 352 (386)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 352 (386)
+.++..+|...+.+|.....+|+....-+
T Consensus 366 ~~~v~~Er~~~~~~l~~~~~~~~~le~~~ 394 (582)
T PF09731_consen 366 KEKVEQERNGRLAKLAELNSRLKALEEAL 394 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556655555555444333
No 448
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=37.01 E-value=1.3e+02 Score=30.60 Aligned_cols=16 Identities=0% Similarity=0.119 Sum_probs=8.2
Q ss_pred EeCChhhHHHHHHhcC
Q 016629 86 TFGNPRSAVDAINDMN 101 (386)
Q Consensus 86 eF~~~~~A~~Ai~~l~ 101 (386)
.|.+.+.....+..|.
T Consensus 74 d~~d~ell~~f~~~Lk 89 (406)
T PF02388_consen 74 DYSDEELLEFFLEELK 89 (406)
T ss_dssp -TT-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5666666665555543
No 449
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=36.92 E-value=2.6e+02 Score=25.78 Aligned_cols=57 Identities=18% Similarity=0.168 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhHh
Q 016629 308 LDLQKRSKKLEEALINAK-------KLSSHRQKQLTKLYKCFIQ-VNEYAERLKSCEREFQVSIF 364 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~-------~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ 364 (386)
.+|.-+.++.|.++...+ ....++||.|+..|-.|.. +--.+.||++.++--+--|.
T Consensus 63 lkla~eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~krpvs 127 (272)
T KOG4552|consen 63 LKLAPEQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEKRPVS 127 (272)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 344444455555444444 4455666666665554432 22236677776665444443
No 450
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=36.81 E-value=2.5e+02 Score=23.45 Aligned_cols=40 Identities=13% Similarity=0.288 Sum_probs=17.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS 328 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 328 (386)
+..+|-.++..+-..+..+..|+..-..+.+++.......
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~ 60 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEEN 60 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444444433333
No 451
>PRK12705 hypothetical protein; Provisional
Probab=36.78 E-value=5.3e+02 Score=27.17 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=13.1
Q ss_pred HHHHHHhhhhhhhhHhHhhhhhhee
Q 016629 347 EYAERLKSCEREFQVSIFNQLSFFL 371 (386)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (386)
+.+..++..|.+.+.-.+..-..+|
T Consensus 158 e~~~~i~~~e~~~~~~a~~~A~~ii 182 (508)
T PRK12705 158 EKAQRVKKIEEEADLEAERKAQNIL 182 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555554
No 452
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=36.77 E-value=1.3e+02 Score=30.92 Aligned_cols=59 Identities=15% Similarity=0.220 Sum_probs=43.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 016629 290 KKEISHMEERVNVKEQLVLDLQKRSKKL--EEALINAKKLSSHRQKQLTKLYKCFIQVNEY 348 (386)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 348 (386)
+.++...++++.+-.+.+.+.+++..-+ +...+..-.+.+.+|.++.+++-.|.+|..+
T Consensus 248 e~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~ 308 (434)
T PRK15178 248 ENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVN 308 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4445555566777777777777777766 6677777788888888888888888877664
No 453
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=36.74 E-value=74 Score=35.62 Aligned_cols=47 Identities=13% Similarity=-0.009 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHhhhhhhhhHhHhhhhhheeeeeE
Q 016629 329 SHRQKQLTKLYKCF----IQVNEYAERLKSCEREFQVSIFNQLSFFLHYHV 375 (386)
Q Consensus 329 ~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (386)
...+++.++|++.| -++..|.+..+..+.+.+.-+....-|+.+|++
T Consensus 550 ~~~~s~~~~l~~~~~~~~~~~~~~~~~~k~~n~~~~~s~~~l~~~~e~~~~ 600 (847)
T KOG0998|consen 550 ADTRSKSTLLDDSFKVGMELFEQLLKGSKLVNGKDQNSSTELAGYLEGTIN 600 (847)
T ss_pred Hhhcccchhhhhhhhhhhhhhhhhhhhhhccccccccchhhhhhhcccccc
Confidence 33445555555555 222233333344444444556666667666664
No 454
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=36.71 E-value=1.6e+02 Score=33.36 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
.+.+..|+.++.+|...+++...+...+|....||++..-
T Consensus 414 s~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~ 453 (1195)
T KOG4643|consen 414 SKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETS 453 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666665555555544
No 455
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=36.66 E-value=1.9e+02 Score=22.10 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKL 338 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l 338 (386)
|.+++.+-.+.+..||..+..++.-+.....+...+-.+.+.|
T Consensus 9 Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l 51 (75)
T PF05531_consen 9 IRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQL 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 4445555556666666666555555544444444333333333
No 456
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=36.62 E-value=1.5e+02 Score=26.42 Aligned_cols=12 Identities=33% Similarity=0.501 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 016629 308 LDLQKRSKKLEE 319 (386)
Q Consensus 308 ~~l~~~~~~~e~ 319 (386)
.||+.++.+|+.
T Consensus 123 ~eL~~eI~~L~~ 134 (171)
T PF04799_consen 123 NELEDEIKQLEK 134 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 457
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=36.56 E-value=3.3e+02 Score=24.68 Aligned_cols=42 Identities=21% Similarity=0.221 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
+......+..++++..+-|+.|.........+...|.+.+..
T Consensus 73 ~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~ 114 (201)
T PF12072_consen 73 LKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEE 114 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444333333
No 458
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=36.52 E-value=4.5e+02 Score=26.30 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNE 347 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 347 (386)
++..-+.-..++.+...++++...+..-++.+...|.+|-+.|-+|+.
T Consensus 268 le~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 268 LEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555555555555555555555555555555555555443
No 459
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=36.43 E-value=28 Score=34.27 Aligned_cols=33 Identities=24% Similarity=0.180 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 016629 316 KLEEALINAKKLSSHRQKQLTKLYKCFIQVNEY 348 (386)
Q Consensus 316 ~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 348 (386)
+..++...-++..+++|+|+..|++++.+|++.
T Consensus 32 ~~~~~~~~~~~~i~~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 32 QTTQSNQNDQQEISELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred hccchhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555566666666666666666555
No 460
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=36.31 E-value=2.6e+02 Score=23.45 Aligned_cols=77 Identities=17% Similarity=0.253 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH--------------HHHHHHHHHHHHHHHHHHHHhh
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ--------------KQLTKLYKCFIQVNEYAERLKS 354 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~~~~~ 354 (386)
++.+++.++..+........+...+.+.+-..+....+....-| +.|+.|...+..++.....|+.
T Consensus 1 ~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~ 80 (132)
T PF07926_consen 1 FESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKA 80 (132)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHhHhh
Q 016629 355 CEREFQVSIFN 365 (386)
Q Consensus 355 ~~~~~~~~~~~ 365 (386)
.-...+..+..
T Consensus 81 ~~~~a~~~l~~ 91 (132)
T PF07926_consen 81 EAESAKAELEE 91 (132)
T ss_pred HHHHHHHHHHH
No 461
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=36.17 E-value=1.4e+02 Score=25.32 Aligned_cols=43 Identities=37% Similarity=0.518 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (386)
+.|++ .++..|+.||.....++....+|.+.++-||-+|-...
T Consensus 24 eiERa-----EmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER 66 (134)
T PF08232_consen 24 EIERA-----EMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQER 66 (134)
T ss_pred HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 462
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=36.15 E-value=2.9e+02 Score=28.31 Aligned_cols=86 Identities=19% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKL--EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
....+.+++..++...+.-++-+..|....+-. ++.+.+++++.-+-+.++..|++.+-+=.+|+.-|+.-|..-..+
T Consensus 144 l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~~~~~ 223 (447)
T KOG2751|consen 144 LLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFKAERL 223 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhhhe
Q 016629 363 IFNQLSFF 370 (386)
Q Consensus 363 ~~~~~~~~ 370 (386)
-.--..|+
T Consensus 224 ~e~~~~~~ 231 (447)
T KOG2751|consen 224 NEEEDQYW 231 (447)
T ss_pred HHHHHHHH
No 463
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=36.09 E-value=3.9e+02 Score=29.07 Aligned_cols=75 Identities=8% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016629 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKS 354 (386)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 354 (386)
..+...++.+...+..+++......+.+-+++++.+.|..+-.....-.+..|.+++-++..+-+|+.|-.++..
T Consensus 119 ~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~ek 193 (716)
T KOG4593|consen 119 GQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEK 193 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 464
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=36.07 E-value=3.1e+02 Score=27.87 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 287 EELKKEISHMEERVNVKEQLVLD----LQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
..+..=+..|++.++.-+..... |......+.........+...+..--..|...+...+++.+++..+...++.-
T Consensus 251 ~El~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~~~i~~~ 330 (412)
T PF04108_consen 251 QELPDVVKELQERLDEMENNEERTKKLLQSQRDHIRELYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEKESIQAY 330 (412)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred Hhhhhhheeeee
Q 016629 363 IFNQLSFFLHYH 374 (386)
Q Consensus 363 ~~~~~~~~~~~~ 374 (386)
++.+-.+..+|+
T Consensus 331 ~~~l~~L~~~Y~ 342 (412)
T PF04108_consen 331 IDELEQLCEFYE 342 (412)
T ss_pred HHHHHHHHHHHH
No 465
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=36.03 E-value=3.6e+02 Score=29.46 Aligned_cols=81 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
....++.|..+...+.+.++...+|......+...++..-+.+-.++..|+.+..+|...+...+.-+-+-.+++-|-.+
T Consensus 236 ~~~~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkGn 315 (670)
T KOG0239|consen 236 ESTIKKKIQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKGN 315 (670)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q ss_pred h
Q 016629 366 Q 366 (386)
Q Consensus 366 ~ 366 (386)
|
T Consensus 316 I 316 (670)
T KOG0239|consen 316 I 316 (670)
T ss_pred c
No 466
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=35.79 E-value=2.7e+02 Score=27.36 Aligned_cols=72 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH------------------HHHHhhhhhhh
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEY------------------AERLKSCEREF 359 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------------------~~~~~~~~~~~ 359 (386)
.++|+-...+..|+..++.+.++++....=...-+.++..|-..|..+=.- .+++..++.|+
T Consensus 133 ~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~ 212 (319)
T PF09789_consen 133 EQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEK 212 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHhHhhhhhh
Q 016629 360 QVSIFNQLSF 369 (386)
Q Consensus 360 ~~~~~~~~~~ 369 (386)
-++--++-+|
T Consensus 213 ~l~k~~i~KY 222 (319)
T PF09789_consen 213 ELLKQTINKY 222 (319)
T ss_pred HHHHHHHHHH
No 467
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.69 E-value=3.5e+02 Score=24.73 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-
Q 016629 280 DRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCERE- 358 (386)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~- 358 (386)
+..+..-++.++.+...-++.+.--.....|.++.+. +...++...|...|+.--.-.-+-+++|++..+|++..==+
T Consensus 99 k~Dl~~vKe~kK~FdK~s~~yd~al~K~~~l~k~~k~-~~~~ea~~~l~~~R~~F~~~~ldyv~~ln~~q~kKk~e~le~ 177 (202)
T cd07606 99 DTDLQEVKDARRRFDKASLDYEQARSKFLSLTKDAKP-EILAAAEEDLGTTRSAFETARFDLMNRLHAADARKRVEFLER 177 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhHhHhhhhhhe
Q 016629 359 FQVSIFNQLSFF 370 (386)
Q Consensus 359 ~~~~~~~~~~~~ 370 (386)
|=..+++++.||
T Consensus 178 ll~~m~A~~tFF 189 (202)
T cd07606 178 LSGSMDAHLAFF 189 (202)
T ss_pred HHHHHHHHHHHH
No 468
>COG5491 VPS24 Conserved protein implicated in secretion [Cell motility and secretion]
Probab=35.66 E-value=2.5e+02 Score=25.82 Aligned_cols=68 Identities=15% Similarity=0.141 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (386)
++...+..--+.+..+++-+++..+.+....+--.+.+.+-+|-++..+|..+.++|.+....++..|
T Consensus 5 ~~~~~~k~~~~~k~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~srL~~~~sRLqs~~~~~~e~~ 72 (204)
T COG5491 5 LERQAKKLVRELKQEAKKGQVLLNEIAKKAPNRRRLAEELYKLRKARSRLDASISRLQSLDTMLFEKV 72 (204)
T ss_pred HHHHHHHhhhhhhhHhHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 469
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=35.60 E-value=1.6e+02 Score=30.14 Aligned_cols=90 Identities=20% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhhe
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLSFF 370 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (386)
..|-.|++.-.+......+||.+...+-.++..+.+--.. .....+..+++..++++..+.++..+...+-..+
T Consensus 29 ~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~------~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 29 DKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGED------DAEELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q ss_pred eeeeEEEEeeccccCC
Q 016629 371 LHYHVIISVSVPCCKI 386 (386)
Q Consensus 371 ~~~~~~~~~~~~~~~~ 386 (386)
|+.=-|+.-+||.++.
T Consensus 103 l~ipNi~~~~VPvg~d 118 (429)
T COG0172 103 LTIPNIPHESVPVGKD 118 (429)
T ss_pred HhCCCCCccccCcCCC
No 470
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.60 E-value=3.9e+02 Score=27.36 Aligned_cols=75 Identities=17% Similarity=0.324 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQV 361 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (386)
+-|+.-+..|..-+.+.+....+|+.|..-|++.+.+..-+..+.++.++++..+..-...-....+.-.+-+.+
T Consensus 244 eKL~~~leemk~~l~k~k~~~~~l~~K~~iL~ekv~~~qti~~e~~~~lk~i~~~~~e~d~~Et~~v~lke~~~L 318 (446)
T KOG4438|consen 244 EKLKEALEEMKDLLQKEKSAMVELQEKAKILEEKVTNLQTIEKELKALLKKISSDGVEYDSLETKVVELKEILEL 318 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHH
No 471
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=35.56 E-value=6.5e+02 Score=28.88 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-------HHHHHHH
Q 016629 276 VKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC-------FIQVNEY 348 (386)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~ 348 (386)
..+.+........++++|..+++..--+.....+|.++..+++..|.++.+-....+..+.+++.. .-+.+..
T Consensus 447 ~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~s 526 (1041)
T KOG0243|consen 447 AEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKS 526 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhhhhhhhHhHhhhhhhe
Q 016629 349 AERLKSCEREFQVSIFNQLSFF 370 (386)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~ 370 (386)
...+..-.-.|+-.+.....++
T Consensus 527 e~~l~~~a~~l~~~~~~s~~d~ 548 (1041)
T KOG0243|consen 527 EEKLVDRATKLRRSLEESQDDL 548 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 472
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=35.55 E-value=82 Score=29.07 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLY 339 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 339 (386)
++++|.+++..|+..+....+|.+.=+.+|..|+
T Consensus 5 tle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQ 38 (216)
T PF07957_consen 5 TLEELKKQVDELQALVKKQSKLISKTGQQVLELQ 38 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 473
>PF12269 zf-CpG_bind_C: CpG binding protein zinc finger C terminal domain; InterPro: IPR022056 This domain family is found in eukaryotes, and is approximately 240 amino acids in length. This domain is the zinc finger domain of a CpG binding DNA methyltransferase protein. It contains a CxxC motif which forms the zinc finger and binds to DNA.
Probab=35.40 E-value=1.7e+02 Score=27.41 Aligned_cols=59 Identities=25% Similarity=0.444 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---------------------------HHHHH
Q 016629 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ---------------------------KQLTK 337 (386)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~---------------------------~~~~~ 337 (386)
....-++.+..|+.+....+..+.+|.++.+.|+..++.+++..-+.. +.+.-
T Consensus 23 A~E~~r~~Le~Ir~kq~~v~~~l~eLe~~~~el~~~i~~~k~~~~~~~~~~~~~e~~D~~~~~~Cv~Cg~~i~~~~a~kH 102 (236)
T PF12269_consen 23 AEEQNRKLLEEIRKKQQKVRNRLQELEKRFKELEAIIARAKQFTVDQDEEQNDDESEDDDLSIYCVTCGHEIPSKKALKH 102 (236)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccccccccccceeeeeeeCCCcCCHHHHHHH
Q ss_pred HHHHHH
Q 016629 338 LYKCFI 343 (386)
Q Consensus 338 l~~~~~ 343 (386)
+|+||.
T Consensus 103 mEkCf~ 108 (236)
T PF12269_consen 103 MEKCFA 108 (236)
T ss_pred HHHHHH
No 474
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=35.37 E-value=2.6e+02 Score=27.55 Aligned_cols=90 Identities=14% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH----
Q 016629 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKL--EEALINAKKLSSHRQKQLTKLYKCFIQVNEYAER---- 351 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---- 351 (386)
......+...-++.++..++.++++-+..+.+.+++..-+ +........+.+.++.++..++..|.++..+...
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Q ss_pred -------HhhhhhhhhHhHhhhh
Q 016629 352 -------LKSCEREFQVSIFNQL 367 (386)
Q Consensus 352 -------~~~~~~~~~~~~~~~~ 367 (386)
+...+.+++..+..++
T Consensus 244 v~~l~~~i~~l~~~i~~e~~~i~ 266 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDEQRNQLS 266 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhh
No 475
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.35 E-value=3e+02 Score=30.99 Aligned_cols=102 Identities=21% Similarity=0.359 Sum_probs=0.0
Q ss_pred ccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhHHHHHHH
Q 016629 260 QLREFSSNSSDDNSDQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKL---EEALINAKKLSSHRQKQLT 336 (386)
Q Consensus 260 ~~~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---e~~~~~~~~~~~~~~~~~~ 336 (386)
++++.+..---++.+-..+.|+....-..|+..--.|..+++..+-.+.+|+.++-.- |.-++..+.+...+-.+|+
T Consensus 386 rLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVk 465 (1243)
T KOG0971|consen 386 RLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVK 465 (1243)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHH
Q ss_pred HHHHHHHHH---HHHHHHHhhhhhhhhH
Q 016629 337 KLYKCFIQV---NEYAERLKSCEREFQV 361 (386)
Q Consensus 337 ~l~~~~~~~---~~~~~~~~~~~~~~~~ 361 (386)
-|++.+.++ .+.++.|.-+++||.+
T Consensus 466 lLeetv~dlEalee~~EQL~Esn~ele~ 493 (1243)
T KOG0971|consen 466 LLEETVGDLEALEEMNEQLQESNRELEL 493 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=35.27 E-value=2e+02 Score=29.64 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 016629 280 DRSIQRREELK--------KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN 346 (386)
Q Consensus 280 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (386)
+.+++....++ +.+..|+...+..+|+...||.++++-|.+-.+ +||+--.+|++.+.||+
T Consensus 459 eeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~------ERqkLKs~leKLvaqvk 527 (527)
T PF15066_consen 459 EEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLE------ERQKLKSRLEKLVAQVK 527 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHhcC
No 477
>COG1422 Predicted membrane protein [Function unknown]
Probab=35.19 E-value=1.3e+02 Score=27.45 Aligned_cols=42 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhhhhHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEE--------ALINAKKLSSHRQKQLTKLY 339 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~--------~~~~~~~~~~~~~~~~~~l~ 339 (386)
|++++-+++..|+|++.....+ .|+.++.--.+.|.+++|++
T Consensus 72 ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~q 121 (201)
T COG1422 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQ 121 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
No 478
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=35.18 E-value=2.7e+02 Score=24.02 Aligned_cols=56 Identities=20% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
+.+-.....++-.+......+..|+.++.++|..++.-.....++++.+..+...+
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~ 78 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERER 78 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=35.17 E-value=4.4e+02 Score=25.79 Aligned_cols=81 Identities=20% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 276 VKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
+++.....+ .|.+||-+.+|.-.=.+++.-.---++.+|..-+...+-.+.-=---..-..+.=-|+++.++-+++.
T Consensus 2 Vdd~QN~N~---EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtL 78 (351)
T PF07058_consen 2 VDDVQNQNQ---ELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTL 78 (351)
T ss_pred chhhhhhcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhh
Q 016629 356 EREF 359 (386)
Q Consensus 356 ~~~~ 359 (386)
|+||
T Consensus 79 eREL 82 (351)
T PF07058_consen 79 EREL 82 (351)
T ss_pred HHHH
No 480
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=35.14 E-value=1.4e+02 Score=30.80 Aligned_cols=87 Identities=24% Similarity=0.219 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQ 366 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (386)
+.|+.+|-.-||+++..+.++.+|.+.+.+--=-.+.-+++.+++-+--..|.+.=.|.-+.+.-.++-+.+.|..+++.
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~sl 412 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSL 412 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHH
Q ss_pred hhheeee
Q 016629 367 LSFFLHY 373 (386)
Q Consensus 367 ~~~~~~~ 373 (386)
.+-|..|
T Consensus 413 ek~~~~~ 419 (622)
T COG5185 413 EKTLRQY 419 (622)
T ss_pred HHHHHHH
No 481
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=35.09 E-value=1.1e+02 Score=22.63 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 282 SIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (386)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (386)
.+..-..++.++..++.++++.+++..+|+.+++.|
T Consensus 15 ~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 15 GYSRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 482
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=35.08 E-value=2.9e+02 Score=25.56 Aligned_cols=92 Identities=16% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016629 279 LDRSIQRRE-ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEA-------LINAKKLSSHRQKQLTKLYKCFIQVNEYAE 350 (386)
Q Consensus 279 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 350 (386)
.+..+..-+ +.++++...-++.|.+--..+...++..+-++. .+++..|...|-.--..+-+.+++|++...
T Consensus 98 lK~dLr~vK~d~KK~fdK~~~dyE~~~~k~ek~~r~~~K~~~~~~~e~~~~E~ae~l~~~R~~fq~~a~dYv~~in~lk~ 177 (215)
T cd07642 98 LKGDLKGVKGDLKKPFDKAWKDYETKVTKIEKEKKEHAKMHGMIRTEISGAEIAEEMEKERRFFQLQMCEYLLKVNEIKI 177 (215)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccchhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHh-hhhhhhhHhHhhhhhhe
Q 016629 351 RLK-SCEREFQVSIFNQLSFF 370 (386)
Q Consensus 351 ~~~-~~~~~~~~~~~~~~~~~ 370 (386)
+.+ +.=+.|-..+++++.||
T Consensus 178 kk~~eiL~~l~~~~~AQ~tfF 198 (215)
T cd07642 178 KKGVDLLQNLIKYFHAQCNFF 198 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
No 483
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=35.06 E-value=1.2e+02 Score=31.43 Aligned_cols=48 Identities=13% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 016629 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQL 335 (386)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~ 335 (386)
..+.+.++|..++++++.++.. |.+++.+||..+.......++++-++
T Consensus 414 ~i~~l~~~i~~~~~rl~~~e~r---l~~qF~ame~~~s~mns~~s~L~~q~ 461 (462)
T PRK08032 414 TLKKLTKQYNAVSDSIDATIAR---YKAQFTQLDKLMTSLNSTSSYLTQQF 461 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
No 484
>PRK14069 exodeoxyribonuclease VII small subunit; Provisional
Probab=35.06 E-value=2e+02 Score=23.02 Aligned_cols=54 Identities=9% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHh
Q 016629 311 QKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIF 364 (386)
Q Consensus 311 ~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (386)
+.....||.-+.....=..-+-.-+...+....-++.|..+|...++++++++.
T Consensus 11 Eeal~~LEeIV~~LEsgdl~LEesl~lyeeGv~L~k~C~~~L~~AE~kV~~L~~ 64 (95)
T PRK14069 11 EDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAEGKIEALTK 64 (95)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 485
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=35.05 E-value=4.2e+02 Score=25.74 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH------------HHHHHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNV-----KEQLVLDLQKRSKKLEEALINAKKLSSHRQ------------KQLTKLYKCFIQVNEYA 349 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~ 349 (386)
+++..++..+|+++.. .-..+.+|++..-.+-..+.....+...++ .++..++..+.|+ .
T Consensus 157 e~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~---~ 233 (322)
T COG0598 157 EQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQL---I 233 (322)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH---H
Q ss_pred HHHhhhhhhhhHhHhhhhhhe
Q 016629 350 ERLKSCEREFQVSIFNQLSFF 370 (386)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~ 370 (386)
+.+......|..+.++.++..
T Consensus 234 ~~~~~~~~~l~~l~d~~~s~i 254 (322)
T COG0598 234 EMLEALRERLSSLLDAYLSLI 254 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
No 486
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=34.92 E-value=2.4e+02 Score=34.22 Aligned_cols=68 Identities=29% Similarity=0.376 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (386)
|+++|..+++.++.++.++.||.+++.+|- .++++..-.+=.....|.+.+-||.+-+.+|..+..++
T Consensus 1312 L~~ei~~Lk~el~~ke~~~~el~~~~~~~q---~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~ 1379 (1822)
T KOG4674|consen 1312 LKSEISRLKEELEEKENLIAELKKELNRLQ---EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEK 1379 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 487
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=34.73 E-value=5.5e+02 Score=27.29 Aligned_cols=95 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred cCCCCCCCchhHHHHH--HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 265 SSNSSDDNSDQVKELD--RSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 265 s~~s~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
.......+-+.+++.| ......++..++.+.++.++...+.++.+|.++.-+.+..+..+..-..+....+..|+-.+
T Consensus 78 ~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~ 157 (546)
T KOG0977|consen 78 VVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEI 157 (546)
T ss_pred hccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHH
Q ss_pred HHHHHHHHHHhhhhhhhhHh
Q 016629 343 IQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~ 362 (386)
.++ +.+.+.+|-++.-|
T Consensus 158 ~~~---krr~~~le~e~~~L 174 (546)
T KOG0977|consen 158 NTL---KRRIKALEDELKRL 174 (546)
T ss_pred HHH---HHHHHHHHHHHHHH
No 488
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=34.48 E-value=1.2e+02 Score=23.60 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016629 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKL 327 (386)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~ 327 (386)
|..|..++++-...+.++|.+++.||.++..+..+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 489
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=34.40 E-value=4.5e+02 Score=25.70 Aligned_cols=78 Identities=14% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016629 283 IQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (386)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (386)
.++...-..+|+.|.+.+..+.......|.++.+|-.++....+...+.=-.--+|...|.-.++....|...=++||
T Consensus 205 v~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elq 282 (306)
T PF04849_consen 205 VKQLSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQ 282 (306)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.33 E-value=2.9e+02 Score=29.64 Aligned_cols=65 Identities=23% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 277 KELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
...++.|++.+..-.++.--......+..++..++.++-.|+-.|+++++...++-.+|..|.+.
T Consensus 446 ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 446 EELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 491
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=34.30 E-value=2e+02 Score=22.64 Aligned_cols=43 Identities=35% Similarity=0.471 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhh
Q 016629 286 REELKKEISHMEERVNVKEQLVLDLQKRSKKLE--EALINAKKLS 328 (386)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e--~~~~~~~~~~ 328 (386)
.+.|..++..++..++..+..+.-|+++.++|+ +...-+..|+
T Consensus 3 Le~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l~k~eRK~RtHRLi 47 (86)
T PF12958_consen 3 LEELQAEIEKAEKKLEQAEHKIKQLENRKKKLEKKERKERTHRLI 47 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=34.29 E-value=3.3e+02 Score=26.23 Aligned_cols=76 Identities=8% Similarity=0.026 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
.++..++.+.+..+...+.+...++....+++..+..++.....-+.++...+..|...+..-++-..++.+|+..
T Consensus 76 ~~~~~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~a 151 (334)
T TIGR00998 76 TNAELALAKAEANLAALVRQTKQLEITVQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLISREELDHA 151 (334)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCcCHHHHHHH
No 493
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=34.14 E-value=1.2e+02 Score=31.41 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEE--ALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
++..-|+.++++++++.+.++..++.+...++- .-...+.-...+.+++..|...+.-|+..-+.|+...
T Consensus 159 ~p~~vQ~~L~~~Rl~~L~~qi~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 230 (475)
T PF10359_consen 159 DPRRVQIELIQERLDELEEQIEKHEEKLGELELNPDDPELKSDIEELERHISSLKERIEFLENMLEDLEDSE 230 (475)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
No 494
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=34.03 E-value=4e+02 Score=25.43 Aligned_cols=85 Identities=13% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-----------HHHHHHHHHHHHHHHHHHHHhhh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ-----------KQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
..+....+.|++=.+..+.++..|+.++.+++..+.++..-.+-+- ++...|...+-+| .+.-...
T Consensus 63 ~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~l---k~~qqdE 139 (258)
T PF15397_consen 63 KQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQL---KDSQQDE 139 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_pred hhhhhHhHhhhhhheeeee
Q 016629 356 EREFQVSIFNQLSFFLHYH 374 (386)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~ 374 (386)
.-+|-.++.-.+..|.+-|
T Consensus 140 ldel~e~~~~el~~l~~~~ 158 (258)
T PF15397_consen 140 LDELNEMRQMELASLSRKI 158 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH
No 495
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=34.01 E-value=6.3e+02 Score=27.21 Aligned_cols=86 Identities=12% Similarity=0.247 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 274 DQVKELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (386)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 353 (386)
+.....+..++ .|+.+++.|+..+++++..++.|..+...+-..+........+.+..-...+..=.-|.+...+..
T Consensus 422 ~~i~~~~~~ve---~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve 498 (652)
T COG2433 422 KRIKKLEETVE---RLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVE 498 (652)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhHh
Q 016629 354 SCEREFQVS 362 (386)
Q Consensus 354 ~~~~~~~~~ 362 (386)
..++.|..|
T Consensus 499 ~L~~~l~~l 507 (652)
T COG2433 499 ELERKLAEL 507 (652)
T ss_pred HHHHHHHHH
No 496
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.93 E-value=88 Score=29.85 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Q 016629 283 IQRREELKKEISHMEERVNVKEQLVLDLQKRS-KKLEEALINAKKL 327 (386)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~e~~~~~~~~~ 327 (386)
+....+++.+|..|+.++++.+. +.+||... +.++.+..+...+
T Consensus 55 ~~~~~~l~~Ql~~l~g~i~~L~~-~~~~q~q~~~~~~~qe~~~~~~ 99 (262)
T COG1729 55 SYRLTQLEQQLRQLQGKIEELRG-IQELQYQNNQNVERQEENEARL 99 (262)
T ss_pred hhccHHHHHHHHHHHhhHHHHHh-HHHHHHHHHHHHHHHHHHHhhh
No 497
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=33.84 E-value=1.9e+02 Score=21.25 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTK-LYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
+.+.+|++++.+=..-...++++..-....-.. +..|-.++.+++.++...+.+|+-+
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l 59 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKL 59 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 498
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=33.70 E-value=3.7e+02 Score=24.45 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
+-|-.-++..+.....|+.++++|-..++++...++.+.-.++.|.+++--++---..-|..+.+|.-|
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledL 72 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDL 72 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=33.63 E-value=4.1e+02 Score=27.68 Aligned_cols=78 Identities=17% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016629 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCER 357 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 357 (386)
.+++.|.. -.-..+..++.-+..+.....+.++++.-||.++....++...-.+++++|.++|. .|-..-++-
T Consensus 108 khn~~I~~--k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~-----kE~~~Rt~d 180 (508)
T PF00901_consen 108 KHNKKIIE--KFGNDLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQ-----KESRERTQD 180 (508)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhccHH
Q ss_pred hhhHh
Q 016629 358 EFQVS 362 (386)
Q Consensus 358 ~~~~~ 362 (386)
|-..+
T Consensus 181 E~~mv 185 (508)
T PF00901_consen 181 ERKMV 185 (508)
T ss_pred HHHHH
No 500
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=33.63 E-value=1.9e+02 Score=29.99 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=0.0
Q ss_pred CCccccccccCCCCCCCchhHHHHHHHHHHHHHHHHHHhHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016629 256 VDDHQLREFSSNSSDDNSDQVKELDRSIQRREELKKEISHMEER--------VNVKEQLVLDLQKRSKKLEEALINAKKL 327 (386)
Q Consensus 256 ~~~~~~~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~e~~~~~~~~~ 327 (386)
+...+..+.+-+|+-...+++.+.|+.+.+..+.+.+|.+.+|+ +|+-+.+..-+..=.+.++.--++++++
T Consensus 96 ~e~e~E~~~~~DS~~~DE~~~~~eE~k~~~e~P~kqqi~~~Ke~ia~~~tki~EePeeNl~~~~~vf~mi~S~~~~~kk~ 175 (657)
T COG5117 96 SESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERIASICTKIIEEPEENLGMMEEVFSMITSMAEKAKKV 175 (657)
T ss_pred CcchhhhhhcccccccccccchhhhhhcCCCCChHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcccchhhhhh
Q ss_pred hhHHH-------------------HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhh
Q 016629 328 SSHRQ-------------------KQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368 (386)
Q Consensus 328 ~~~~~-------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (386)
+---- .|-+|+-+..+++++|..-|.--....--++..+++
T Consensus 176 s~LsLl~VFk~IIPgYkIRpL~e~Eq~~K~skev~~l~~yeqsLl~~Y~~yi~tl~~~~k 235 (657)
T COG5117 176 SYLSLLKVFKAIIPGYKIRPLKEEEQMVKDSKEVLHLKDYEQSLLRWYTSYIKTLVDDVK 235 (657)
T ss_pred hHHHHHHHHHHhCccccccccchHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Done!