Query 016629
Match_columns 386
No_of_seqs 326 out of 2294
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 16:48:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_S U1-70K; protein-RNA com 99.9 5.5E-22 1.9E-26 200.3 20.6 85 36-120 99-184 (437)
2 4fxv_A ELAV-like protein 1; RN 99.8 1.2E-19 4E-24 146.2 11.3 81 37-117 17-98 (99)
3 1h2v_Z 20 kDa nuclear CAP bind 99.8 7.3E-19 2.5E-23 152.7 12.7 87 34-120 34-121 (156)
4 3s8s_A Histone-lysine N-methyl 99.8 1.9E-18 6.4E-23 141.9 11.6 82 37-118 4-86 (110)
5 3ex7_B RNA-binding protein 8A; 99.8 1E-18 3.5E-23 146.2 9.3 89 33-121 16-105 (126)
6 1u6f_A Tcubp1, RNA-binding pro 99.8 5.1E-18 1.8E-22 144.3 13.7 87 35-121 38-125 (139)
7 2dnz_A Probable RNA-binding pr 99.8 3.3E-18 1.1E-22 135.7 11.4 85 36-120 2-87 (95)
8 2fy1_A RNA-binding motif prote 99.8 4.5E-18 1.5E-22 140.8 11.9 86 35-120 3-88 (116)
9 3bs9_A Nucleolysin TIA-1 isofo 99.8 4E-18 1.4E-22 132.9 10.7 83 36-118 3-86 (87)
10 1whw_A Hypothetical protein ri 99.8 6.5E-18 2.2E-22 135.2 12.2 86 36-121 5-91 (99)
11 2dnm_A SRP46 splicing factor; 99.8 3.1E-18 1.1E-22 138.1 10.1 88 33-120 7-95 (103)
12 1x5u_A Splicing factor 3B subu 99.8 3.8E-18 1.3E-22 138.0 10.6 88 34-121 10-98 (105)
13 1x5t_A Splicing factor 3B subu 99.7 4.4E-18 1.5E-22 135.3 10.4 84 37-120 3-88 (96)
14 2cq0_A Eukaryotic translation 99.7 6.2E-18 2.1E-22 136.4 11.4 86 35-120 11-97 (103)
15 2dgo_A Cytotoxic granule-assoc 99.7 1.9E-17 6.6E-22 136.1 14.1 87 35-121 11-98 (115)
16 2cqb_A Peptidyl-prolyl CIS-tra 99.7 5.5E-18 1.9E-22 136.4 10.4 86 36-121 9-95 (102)
17 2dgs_A DAZ-associated protein 99.7 8.1E-18 2.8E-22 134.7 11.2 86 35-121 6-92 (99)
18 3md1_A Nuclear and cytoplasmic 99.7 9.3E-18 3.2E-22 129.6 11.2 80 40-119 2-82 (83)
19 2lxi_A RNA-binding protein 10; 99.7 1.5E-18 5.3E-23 137.4 6.7 82 39-120 1-85 (91)
20 2cpf_A RNA binding motif prote 99.7 9.4E-18 3.2E-22 134.0 11.2 84 37-120 3-90 (98)
21 2dgx_A KIAA0430 protein; RRM d 99.7 9.3E-18 3.2E-22 133.9 11.0 84 35-120 5-92 (96)
22 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.9E-17 6.6E-22 133.5 13.0 85 35-120 11-95 (103)
23 2do4_A Squamous cell carcinoma 99.7 1.4E-17 4.6E-22 133.6 12.0 85 36-120 14-98 (100)
24 2cpz_A CUG triplet repeat RNA- 99.7 1.1E-17 3.8E-22 137.7 11.4 86 35-120 21-107 (115)
25 2cq3_A RNA-binding protein 9; 99.7 2.7E-17 9.2E-22 132.6 13.4 86 35-121 11-96 (103)
26 1x5s_A Cold-inducible RNA-bind 99.7 6.8E-18 2.3E-22 135.8 9.8 86 35-120 8-94 (102)
27 1x4h_A RNA-binding protein 28; 99.7 1.4E-17 5E-22 135.8 11.8 86 35-120 11-103 (111)
28 4f25_A Polyadenylate-binding p 99.7 7.8E-18 2.7E-22 139.0 10.3 80 39-119 5-84 (115)
29 1wi8_A EIF-4B, eukaryotic tran 99.7 1.3E-17 4.4E-22 134.9 11.2 86 33-120 9-96 (104)
30 2d9p_A Polyadenylate-binding p 99.7 1.1E-17 3.8E-22 134.9 10.8 86 34-120 10-95 (103)
31 1p27_B RNA-binding protein 8A; 99.7 7.8E-18 2.7E-22 136.4 9.9 87 33-119 17-104 (106)
32 2dng_A Eukaryotic translation 99.7 2E-17 6.8E-22 133.5 12.1 85 34-120 10-95 (103)
33 2x1f_A MRNA 3'-END-processing 99.7 1.3E-17 4.3E-22 132.9 10.7 83 38-120 1-84 (96)
34 2cqc_A Arginine/serine-rich sp 99.7 1.3E-17 4.6E-22 132.1 10.8 83 35-117 11-94 (95)
35 3mdf_A Peptidyl-prolyl CIS-tra 99.7 9.8E-18 3.4E-22 130.1 9.8 81 36-116 4-85 (85)
36 2e5h_A Zinc finger CCHC-type a 99.7 1.7E-17 5.9E-22 131.3 11.3 82 35-116 12-94 (94)
37 1oo0_B CG8781-PA, drosophila Y 99.7 1.2E-17 4.2E-22 136.2 10.4 86 35-120 22-108 (110)
38 1x4c_A Splicing factor, argini 99.7 3.6E-17 1.2E-21 133.3 13.2 77 37-119 13-94 (108)
39 2ywk_A Putative RNA-binding pr 99.7 1.4E-17 4.8E-22 132.1 10.4 83 35-117 12-94 (95)
40 2lkz_A RNA-binding protein 5; 99.7 4.1E-18 1.4E-22 136.2 7.3 80 38-117 8-94 (95)
41 2dhg_A TRNA selenocysteine ass 99.7 1.3E-17 4.4E-22 134.6 10.2 85 36-120 6-92 (104)
42 2dnh_A Bruno-like 5, RNA bindi 99.7 1.9E-17 6.5E-22 133.9 11.1 85 36-120 12-99 (105)
43 2div_A TRNA selenocysteine ass 99.7 1.1E-17 3.8E-22 133.8 9.6 86 35-120 5-96 (99)
44 2cph_A RNA binding motif prote 99.7 1.8E-17 6.1E-22 134.4 10.8 86 35-120 11-99 (107)
45 3ulh_A THO complex subunit 4; 99.7 2.4E-17 8.1E-22 133.8 11.5 83 34-116 24-106 (107)
46 2la6_A RNA-binding protein FUS 99.7 1.1E-17 3.8E-22 134.0 9.4 84 33-116 7-99 (99)
47 2cqd_A RNA-binding region cont 99.7 4.6E-17 1.6E-21 134.2 13.2 85 35-120 13-98 (116)
48 4a8x_A RNA-binding protein wit 99.7 1.5E-17 5.3E-22 129.7 9.8 82 38-119 3-86 (88)
49 2cpi_A CCR4-NOT transcription 99.7 1.8E-17 6.3E-22 135.8 10.3 88 33-120 9-103 (111)
50 2cpe_A RNA-binding protein EWS 99.7 2.2E-17 7.4E-22 135.4 10.7 86 35-120 11-105 (113)
51 1x4a_A Splicing factor, argini 99.7 3.9E-17 1.3E-21 133.1 12.1 84 35-120 18-101 (109)
52 2do0_A HnRNP M, heterogeneous 99.7 9.1E-17 3.1E-21 131.8 14.3 85 35-119 11-95 (114)
53 2dgp_A Bruno-like 4, RNA bindi 99.7 1.3E-17 4.4E-22 135.1 9.0 87 34-120 8-98 (106)
54 2khc_A Testis-specific RNP-typ 99.7 2.6E-17 9E-22 136.0 11.0 83 34-116 35-118 (118)
55 1rk8_A CG8781-PA, CG8781-PA pr 99.7 2.5E-17 8.6E-22 144.5 11.4 88 33-120 66-154 (165)
56 3s7r_A Heterogeneous nuclear r 99.7 6.2E-17 2.1E-21 126.3 12.0 81 34-115 6-87 (87)
57 2dh8_A DAZ-associated protein 99.7 3E-17 1E-21 132.8 10.5 85 35-120 12-97 (105)
58 2jrs_A RNA-binding protein 39; 99.7 1.3E-17 4.6E-22 136.2 8.4 86 33-118 20-106 (108)
59 2dgv_A HnRNP M, heterogeneous 99.7 2.9E-17 1E-21 129.4 10.0 85 35-120 4-88 (92)
60 2err_A Ataxin-2-binding protei 99.7 2.4E-17 8.2E-22 134.8 9.7 86 32-118 22-107 (109)
61 3p5t_L Cleavage and polyadenyl 99.7 5E-18 1.7E-22 133.8 5.4 81 40-120 2-85 (90)
62 3ucg_A Polyadenylate-binding p 99.7 5.4E-17 1.9E-21 127.0 11.1 79 39-118 6-85 (89)
63 3ns6_A Eukaryotic translation 99.7 5.8E-18 2E-22 136.3 5.6 83 37-119 4-94 (100)
64 1sjq_A Polypyrimidine tract-bi 99.7 2.9E-17 9.9E-22 133.5 9.3 81 36-121 13-95 (105)
65 3n9u_C Cleavage and polyadenyl 99.7 4.3E-17 1.5E-21 142.1 10.9 81 38-118 54-137 (156)
66 2wbr_A GW182, gawky, LD47780P; 99.7 4.1E-17 1.4E-21 127.6 9.5 76 36-116 4-79 (89)
67 1s79_A Lupus LA protein; RRM, 99.7 1.9E-17 6.6E-22 134.3 7.8 80 37-117 9-88 (103)
68 2cqg_A TDP-43, TAR DNA-binding 99.7 1.5E-16 5.1E-21 128.2 13.0 85 34-120 10-95 (103)
69 2nlw_A Eukaryotic translation 99.7 3.1E-17 1.1E-21 133.1 9.0 88 31-119 7-101 (105)
70 2kxn_B Transformer-2 protein h 99.7 2.9E-17 9.9E-22 138.6 8.6 86 34-119 41-127 (129)
71 2dgu_A Heterogeneous nuclear r 99.7 1.7E-16 5.7E-21 128.1 12.6 79 36-121 8-86 (103)
72 2kt5_A RNA and export factor-b 99.7 1.6E-16 5.6E-21 132.5 12.9 86 35-120 31-116 (124)
73 3r27_A HnRNP L, heterogeneous 99.7 6.5E-17 2.2E-21 130.2 10.0 79 35-118 17-97 (100)
74 2cq4_A RNA binding motif prote 99.7 4E-17 1.4E-21 134.1 9.0 82 38-120 24-106 (114)
75 1x4b_A Heterogeneous nuclear r 99.7 8.2E-17 2.8E-21 132.7 10.8 82 38-120 26-108 (116)
76 2dgw_A Probable RNA-binding pr 99.7 1.6E-16 5.6E-21 125.1 11.8 82 36-119 7-88 (91)
77 2fc9_A NCL protein; structure 99.7 1.2E-16 4.2E-21 128.3 11.3 82 36-120 12-93 (101)
78 2cqp_A RNA-binding protein 12; 99.7 3.8E-17 1.3E-21 130.4 8.2 83 36-118 12-95 (98)
79 2dnq_A RNA-binding protein 4B; 99.7 1E-16 3.4E-21 126.1 10.4 78 36-120 5-82 (90)
80 2la4_A Nuclear and cytoplasmic 99.7 5.2E-17 1.8E-21 130.4 8.9 77 36-117 24-100 (101)
81 2rs2_A Musashi-1, RNA-binding 99.7 1.1E-16 3.8E-21 130.9 10.8 84 36-120 22-106 (109)
82 2cq1_A PTB-like protein L; RRM 99.7 1.7E-16 5.9E-21 128.2 11.6 82 35-121 11-94 (101)
83 1x4d_A Matrin 3; structural ge 99.7 5.8E-17 2E-21 131.2 8.8 80 36-120 12-94 (102)
84 1x4e_A RNA binding motif, sing 99.7 1.6E-17 5.4E-22 129.2 5.1 81 36-116 2-83 (85)
85 2dgt_A RNA-binding protein 30; 99.7 2E-16 6.9E-21 124.9 11.6 79 35-120 6-84 (92)
86 3q2s_C Cleavage and polyadenyl 99.7 1.2E-17 4.2E-22 154.5 5.2 81 38-118 67-150 (229)
87 2ek1_A RNA-binding protein 12; 99.7 3.3E-17 1.1E-21 129.9 6.9 81 37-117 13-94 (95)
88 3beg_B Splicing factor, argini 99.7 3.6E-17 1.2E-21 135.1 7.2 75 37-117 14-93 (115)
89 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2.3E-17 7.9E-22 132.6 5.7 82 35-118 15-98 (100)
90 1wez_A HnRNP H', FTP-3, hetero 99.7 9.6E-17 3.3E-21 129.8 9.4 82 36-119 12-93 (102)
91 2xnq_A Nuclear polyadenylated 99.7 1.9E-16 6.5E-21 126.7 10.9 77 35-118 18-95 (97)
92 2kn4_A Immunoglobulin G-bindin 99.7 1.6E-16 5.3E-21 137.9 11.0 85 36-120 67-152 (158)
93 2ad9_A Polypyrimidine tract-bi 99.7 1.1E-16 3.9E-21 132.9 9.7 84 33-121 25-110 (119)
94 2cpd_A Apobec-1 stimulating pr 99.7 3.8E-16 1.3E-20 125.0 12.4 79 35-120 11-91 (99)
95 2jvr_A Nucleolar protein 3; RN 99.7 7.6E-17 2.6E-21 132.6 8.4 80 36-118 25-105 (111)
96 1x4g_A Nucleolysin TIAR; struc 99.7 2.1E-16 7.2E-21 128.8 11.0 80 36-120 22-101 (109)
97 2jwn_A Embryonic polyadenylate 99.7 1.9E-16 6.6E-21 131.9 11.0 80 39-119 36-116 (124)
98 2jvo_A Nucleolar protein 3; nu 99.7 1.3E-16 4.4E-21 130.3 9.5 79 35-120 27-105 (108)
99 2cpy_A RNA-binding protein 12; 99.7 1.3E-16 4.4E-21 131.4 9.6 83 36-119 12-95 (114)
100 2a3j_A U1 small nuclear ribonu 99.7 1.1E-16 3.6E-21 134.9 9.1 84 35-120 25-112 (127)
101 2fc8_A NCL protein; structure 99.7 2.5E-16 8.5E-21 126.6 10.9 83 35-120 11-94 (102)
102 2hvz_A Splicing factor, argini 99.7 8.8E-17 3E-21 129.1 8.2 77 40-120 1-77 (101)
103 1p1t_A Cleavage stimulation fa 99.7 6.6E-17 2.3E-21 130.3 7.4 83 38-120 7-90 (104)
104 2dnp_A RNA-binding protein 14; 99.7 2.7E-16 9.1E-21 123.7 10.6 78 36-120 6-83 (90)
105 2dis_A Unnamed protein product 99.7 1.8E-16 6.1E-21 129.0 9.9 84 37-120 6-94 (109)
106 2mss_A Protein (musashi1); RNA 99.7 4.4E-17 1.5E-21 123.6 5.9 74 41-115 1-75 (75)
107 1why_A Hypothetical protein ri 99.7 1.8E-16 6.3E-21 126.4 9.7 80 36-120 14-95 (97)
108 1x5o_A RNA binding motif, sing 99.7 2.2E-16 7.4E-21 129.6 10.1 83 36-118 22-112 (114)
109 2db1_A Heterogeneous nuclear r 99.7 1.4E-16 4.7E-21 132.2 8.9 82 36-118 14-98 (118)
110 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 2.8E-16 9.6E-21 133.2 10.8 81 35-115 59-140 (140)
111 2m2b_A RNA-binding protein 10; 99.7 4.9E-17 1.7E-21 137.2 5.9 84 35-119 19-109 (131)
112 2cpj_A Non-POU domain-containi 99.7 2.4E-16 8.1E-21 126.2 9.6 81 35-120 11-91 (99)
113 2lea_A Serine/arginine-rich sp 99.7 5.7E-17 1.9E-21 137.8 6.2 87 34-120 42-129 (135)
114 2ytc_A PRE-mRNA-splicing facto 99.7 3.5E-16 1.2E-20 121.4 10.0 76 36-116 9-85 (85)
115 1uaw_A Mouse-musashi-1; RNP-ty 99.7 7.3E-17 2.5E-21 122.7 6.0 75 40-115 1-76 (77)
116 1nu4_A U1A RNA binding domain; 99.7 9.4E-17 3.2E-21 127.8 6.8 83 35-119 4-90 (97)
117 1wg5_A Heterogeneous nuclear r 99.7 3.1E-16 1.1E-20 127.0 9.8 83 36-119 12-95 (104)
118 2cqh_A IGF-II mRNA-binding pro 99.7 1.9E-16 6.6E-21 125.2 8.3 79 36-120 5-85 (93)
119 1wex_A Hypothetical protein (r 99.7 3.3E-16 1.1E-20 127.2 9.8 81 35-120 11-93 (104)
120 2cpx_A Hypothetical protein FL 99.7 2.2E-16 7.4E-21 129.7 8.8 82 36-120 22-107 (115)
121 3lqv_A PRE-mRNA branch site pr 99.7 3E-16 1E-20 129.0 9.4 83 36-120 5-87 (115)
122 2kvi_A Nuclear polyadenylated 99.7 1.4E-16 4.9E-21 126.9 7.2 78 36-120 7-85 (96)
123 2krb_A Eukaryotic translation 99.6 9.3E-17 3.2E-21 123.9 5.6 73 39-112 1-80 (81)
124 2hgl_A HNRPF protein, heteroge 99.6 1.6E-16 5.5E-21 135.3 7.5 82 36-118 41-125 (136)
125 1wf1_A RNA-binding protein RAL 99.6 4.8E-16 1.6E-20 126.9 10.0 76 37-119 25-101 (110)
126 2e5j_A Methenyltetrahydrofolat 99.6 2.5E-16 8.6E-21 125.6 8.0 80 36-119 16-95 (97)
127 2lcw_A RNA-binding protein FUS 99.5 1.1E-17 3.7E-22 138.0 0.0 85 36-120 4-97 (116)
128 2dnn_A RNA-binding protein 12; 99.6 2.3E-16 7.8E-21 129.3 7.6 78 39-118 16-93 (109)
129 2ki2_A SS-DNA binding protein 99.6 4.9E-17 1.7E-21 127.7 3.4 80 40-120 2-82 (90)
130 1wel_A RNA-binding protein 12; 99.6 8.9E-17 3E-21 134.3 5.1 82 36-118 22-104 (124)
131 1x4f_A Matrin 3; structural ge 99.6 2.3E-16 7.8E-21 129.7 6.5 80 36-120 22-104 (112)
132 2lmi_A GRSF-1, G-rich sequence 99.6 1E-16 3.4E-21 130.5 4.2 83 35-118 7-92 (107)
133 1fjc_A Nucleolin RBD2, protein 99.6 3.4E-16 1.2E-20 124.4 7.1 81 36-120 13-93 (96)
134 1x5p_A Negative elongation fac 99.6 2.8E-15 9.4E-20 119.6 12.2 79 35-120 11-89 (97)
135 2hgn_A Heterogeneous nuclear r 99.6 1E-16 3.5E-21 137.0 3.7 84 35-120 42-125 (139)
136 4f02_A Polyadenylate-binding p 99.6 1.5E-15 5.2E-20 138.3 11.3 83 36-118 12-95 (213)
137 1fj7_A Nucleolin RBD1, protein 99.6 8.8E-17 3E-21 129.1 2.5 83 36-120 14-97 (101)
138 1whx_A Hypothetical protein ri 99.6 5.8E-16 2E-20 127.0 7.4 76 38-118 9-84 (111)
139 2cq2_A Hypothetical protein LO 99.6 1.5E-15 5E-20 125.2 9.7 83 33-120 19-108 (114)
140 2xs2_A Deleted in azoospermia- 99.6 7.4E-16 2.5E-20 123.9 7.8 81 38-120 8-88 (102)
141 2f3j_A RNA and export factor b 99.6 9E-16 3.1E-20 136.4 8.9 86 35-120 84-169 (177)
142 1iqt_A AUF1, heterogeneous nuc 99.6 2.4E-16 8.2E-21 119.4 4.4 74 41-115 1-75 (75)
143 2i2y_A Fusion protein consists 99.6 7.8E-16 2.7E-20 132.6 8.2 81 35-119 69-149 (150)
144 3egn_A RNA-binding protein 40; 99.6 9.4E-16 3.2E-20 131.0 8.2 86 35-120 41-132 (143)
145 2e5g_A U6 snRNA-specific termi 99.6 5E-15 1.7E-19 117.3 11.2 78 37-119 6-83 (94)
146 2dha_A FLJ20171 protein; RRM d 99.6 8.4E-16 2.9E-20 128.6 6.5 81 37-118 21-105 (123)
147 1wg1_A KIAA1579 protein, homol 99.6 2.2E-15 7.4E-20 118.1 8.5 76 38-119 4-79 (88)
148 1sjr_A Polypyrimidine tract-bi 99.6 3.2E-15 1.1E-19 130.6 10.3 79 38-119 45-125 (164)
149 3d2w_A TAR DNA-binding protein 99.6 3.7E-15 1.3E-19 117.3 9.5 77 35-119 7-85 (89)
150 2hgm_A HNRPF protein, heteroge 99.6 1.4E-15 4.8E-20 127.7 7.3 82 35-118 38-121 (126)
151 3md3_A Nuclear and cytoplasmic 99.6 6.2E-15 2.1E-19 127.3 11.5 82 35-116 83-165 (166)
152 1fxl_A Paraneoplastic encephal 99.6 8.1E-15 2.8E-19 126.6 11.5 81 39-119 2-83 (167)
153 3zzy_A Polypyrimidine tract-bi 99.6 8.4E-15 2.9E-19 123.3 10.8 80 37-120 26-108 (130)
154 1b7f_A Protein (SXL-lethal pro 99.6 5.1E-15 1.7E-19 128.4 9.7 82 38-119 2-84 (168)
155 2e44_A Insulin-like growth fac 99.6 3.5E-15 1.2E-19 118.5 7.3 79 37-118 13-92 (96)
156 2j8a_A Histone-lysine N-methyl 99.6 6.8E-15 2.3E-19 122.6 9.1 77 40-116 3-94 (136)
157 2g4b_A Splicing factor U2AF 65 99.6 1.5E-14 5E-19 126.1 11.3 80 37-116 92-172 (172)
158 3md3_A Nuclear and cytoplasmic 99.6 1.2E-14 4E-19 125.5 10.6 80 40-119 1-80 (166)
159 1wf0_A TDP-43, TAR DNA-binding 99.6 4.3E-15 1.5E-19 116.2 7.1 78 37-120 3-80 (88)
160 2yh0_A Splicing factor U2AF 65 99.6 1.7E-14 5.8E-19 128.6 11.8 85 36-120 111-196 (198)
161 2qfj_A FBP-interacting repress 99.6 1.3E-14 4.5E-19 131.1 10.9 85 37-121 123-208 (216)
162 1l3k_A Heterogeneous nuclear r 99.6 1.2E-14 4.3E-19 129.2 10.6 84 35-119 9-93 (196)
163 4f02_A Polyadenylate-binding p 99.6 9.6E-15 3.3E-19 132.9 10.0 80 39-119 103-182 (213)
164 1l3k_A Heterogeneous nuclear r 99.6 1.7E-14 5.9E-19 128.3 11.1 85 36-121 101-186 (196)
165 2e5i_A Heterogeneous nuclear r 99.6 1.6E-14 5.5E-19 120.8 10.2 75 40-119 26-103 (124)
166 3tyt_A Heterogeneous nuclear r 99.5 1.3E-14 4.3E-19 131.9 10.1 78 37-118 2-80 (205)
167 2hzc_A Splicing factor U2AF 65 99.5 1.1E-14 3.8E-19 113.2 8.3 71 37-113 4-85 (87)
168 3u1l_A PRE-mRNA-splicing facto 99.5 7.1E-15 2.4E-19 136.4 8.2 114 2-120 80-231 (240)
169 2diu_A KIAA0430 protein; struc 99.5 1E-14 3.5E-19 115.1 7.6 75 37-120 6-86 (96)
170 2bz2_A Negative elongation fac 99.5 1.4E-14 5E-19 120.6 8.2 78 36-120 36-113 (121)
171 3nmr_A Cugbp ELAV-like family 99.5 2.7E-14 9.2E-19 124.5 9.4 81 36-116 92-175 (175)
172 2cjk_A Nuclear polyadenylated 99.5 1.1E-14 3.7E-19 126.3 6.8 79 39-118 87-166 (167)
173 2pe8_A Splicing factor 45; RRM 99.5 7.9E-14 2.7E-18 113.3 11.0 82 37-118 6-94 (105)
174 2voo_A Lupus LA protein; RNA-b 99.5 5.1E-14 1.7E-18 126.7 10.8 78 39-117 109-186 (193)
175 1b7f_A Protein (SXL-lethal pro 99.5 5E-14 1.7E-18 122.1 10.2 80 36-115 86-168 (168)
176 2dnl_A Cytoplasmic polyadenyla 99.5 2.9E-14 1E-18 117.2 8.2 77 36-115 5-85 (114)
177 2qfj_A FBP-interacting repress 99.5 5.3E-14 1.8E-18 127.1 9.0 81 38-118 27-108 (216)
178 1fxl_A Paraneoplastic encephal 99.5 7.5E-14 2.6E-18 120.5 9.1 79 37-115 86-167 (167)
179 3nmr_A Cugbp ELAV-like family 99.5 6.9E-14 2.4E-18 121.8 8.9 82 38-119 2-89 (175)
180 1fje_B Nucleolin RBD12, protei 99.5 8.7E-14 3E-18 121.7 9.3 78 37-118 97-174 (175)
181 3pgw_A U1-A; protein-RNA compl 99.5 1.7E-13 5.8E-18 129.4 11.3 83 35-119 5-91 (282)
182 3pgw_A U1-A; protein-RNA compl 99.5 3.7E-13 1.2E-17 127.1 12.6 77 36-116 204-281 (282)
183 2adc_A Polypyrimidine tract-bi 99.5 8.6E-14 2.9E-18 128.0 8.0 79 36-118 31-110 (229)
184 2cjk_A Nuclear polyadenylated 99.5 1E-13 3.5E-18 120.1 8.0 79 38-118 2-81 (167)
185 2ghp_A U4/U6 snRNA-associated 99.5 1.6E-13 5.5E-18 130.2 9.9 83 35-118 206-291 (292)
186 3smz_A Protein raver-1, ribonu 99.4 2.8E-13 9.5E-18 128.1 11.2 85 36-120 181-266 (284)
187 2dit_A HIV TAT specific factor 99.4 7.4E-13 2.5E-17 108.4 12.0 83 35-120 11-104 (112)
188 1jmt_A Splicing factor U2AF 35 99.4 7.6E-14 2.6E-18 113.2 4.4 73 43-115 19-103 (104)
189 3smz_A Protein raver-1, ribonu 99.4 1.2E-12 4E-17 123.7 12.6 84 37-120 93-177 (284)
190 3sde_A Paraspeckle component 1 99.4 4.4E-13 1.5E-17 125.8 9.0 78 35-117 18-95 (261)
191 1qm9_A Polypyrimidine tract-bi 99.4 2.3E-13 8E-18 121.6 6.1 77 39-119 3-80 (198)
192 1qm9_A Polypyrimidine tract-bi 99.4 3.5E-13 1.2E-17 120.5 7.0 79 36-118 117-197 (198)
193 3tyt_A Heterogeneous nuclear r 99.4 3.9E-13 1.3E-17 122.0 7.4 79 36-115 120-204 (205)
194 2adc_A Polypyrimidine tract-bi 99.4 7E-13 2.4E-17 121.9 9.1 79 36-118 148-228 (229)
195 3v4m_A Splicing factor U2AF 65 99.4 9.4E-13 3.2E-17 106.9 8.3 81 38-118 4-97 (105)
196 1fje_B Nucleolin RBD12, protei 99.4 1.3E-13 4.3E-18 120.7 3.1 84 35-119 9-92 (175)
197 2ghp_A U4/U6 snRNA-associated 99.4 1E-12 3.5E-17 124.6 8.8 84 37-120 115-199 (292)
198 3sde_A Paraspeckle component 1 99.4 1.9E-12 6.4E-17 121.4 10.2 82 37-118 94-179 (261)
199 2g4b_A Splicing factor U2AF 65 99.3 2.6E-12 9E-17 111.7 9.1 75 38-118 3-88 (172)
200 3ue2_A Poly(U)-binding-splicin 99.3 3.4E-12 1.1E-16 105.8 8.9 80 38-117 19-108 (118)
201 2yh0_A Splicing factor U2AF 65 99.3 3.8E-12 1.3E-16 113.2 9.8 75 38-118 3-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.3 8.4E-12 2.9E-16 100.4 8.6 66 49-120 27-92 (100)
203 3tht_A Alkylated DNA repair pr 99.3 6.4E-12 2.2E-16 122.4 9.4 78 34-116 13-97 (345)
204 3s6e_A RNA-binding protein 39; 99.2 7.7E-11 2.6E-15 97.0 9.5 78 38-118 6-93 (114)
205 2dnr_A Synaptojanin-1; RRM dom 99.1 3E-10 1E-14 88.8 7.6 75 36-118 4-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.1 3.5E-10 1.2E-14 93.7 8.5 78 34-116 13-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 98.8 8.6E-09 2.9E-13 80.9 7.1 74 35-116 11-93 (95)
208 3dxb_A Thioredoxin N-terminall 98.8 2.6E-08 8.8E-13 90.7 9.8 81 37-117 122-212 (222)
209 2l9w_A U4/U6 snRNA-associated- 98.2 8.6E-06 2.9E-10 65.3 8.7 74 37-115 19-97 (117)
210 1wey_A Calcipressin 1; structu 97.7 0.00012 4.2E-09 58.2 7.5 77 37-118 3-84 (104)
211 1wwh_A Nucleoporin 35, nucleop 97.1 0.0013 4.4E-08 53.7 7.1 73 36-115 21-94 (119)
212 1whv_A Poly(A)-specific ribonu 96.9 0.003 1E-07 49.5 7.3 55 39-101 16-70 (100)
213 1uw4_A UPF3X; nonsense mediate 96.8 0.0066 2.3E-07 47.2 8.8 77 40-116 2-86 (91)
214 3ctr_A Poly(A)-specific ribonu 96.7 0.0017 5.7E-08 51.1 4.8 54 40-101 7-60 (101)
215 2dhx_A Poly (ADP-ribose) polym 96.7 0.0084 2.9E-07 47.5 8.8 73 36-116 5-82 (104)
216 3pgw_S U1-70K; protein-RNA com 96.2 0.016 5.5E-07 57.9 9.8 24 86-111 147-170 (437)
217 3p3d_A Nucleoporin 53; structu 96.1 0.0081 2.8E-07 49.7 5.5 78 38-117 6-98 (132)
218 2l08_A Regulator of nonsense t 95.2 0.033 1.1E-06 43.7 5.6 78 39-116 9-94 (97)
219 3pq1_A Poly(A) RNA polymerase; 95.1 0.012 4.2E-07 59.0 3.8 56 39-99 53-108 (464)
220 2kn4_A Immunoglobulin G-bindin 94.1 0.033 1.1E-06 46.9 3.6 36 68-104 2-37 (158)
221 3u59_A Tropomyosin beta chain; 93.8 1.6 5.4E-05 34.2 12.6 76 284-362 23-98 (101)
222 3u1c_A Tropomyosin alpha-1 cha 93.8 1.4 4.7E-05 34.6 12.2 79 281-362 20-98 (101)
223 2i2y_A Fusion protein consists 93.6 0.021 7E-07 47.9 1.4 40 78-118 11-51 (150)
224 1ic2_A Tropomyosin alpha chain 91.9 2.1 7.3E-05 32.0 10.5 44 298-341 20-63 (81)
225 3a7p_A Autophagy protein 16; c 91.4 2.6 8.8E-05 35.4 11.3 65 301-368 71-135 (152)
226 3u1c_A Tropomyosin alpha-1 cha 89.3 5.9 0.0002 30.9 11.2 56 288-343 6-61 (101)
227 2akf_A Coronin-1A; coiled coil 88.7 0.61 2.1E-05 27.7 3.7 30 294-323 2-31 (32)
228 3u59_A Tropomyosin beta chain; 88.4 7.2 0.00025 30.3 11.2 48 296-343 21-68 (101)
229 4h22_A Leucine-rich repeat fli 87.7 5.2 0.00018 31.3 9.6 56 288-343 27-82 (103)
230 3hnw_A Uncharacterized protein 87.6 5.5 0.00019 33.0 10.6 49 294-342 78-126 (138)
231 2v71_A Nuclear distribution pr 85.8 11 0.00038 32.8 11.9 63 299-361 50-116 (189)
232 1ic2_A Tropomyosin alpha chain 85.1 9.8 0.00034 28.3 11.1 70 288-360 3-72 (81)
233 2efr_A General control protein 85.0 16 0.00055 30.8 12.2 68 298-368 70-137 (155)
234 3hnw_A Uncharacterized protein 84.9 7.3 0.00025 32.2 10.0 42 304-345 74-115 (138)
235 3d45_A Poly(A)-specific ribonu 84.8 1.6 5.6E-05 44.2 7.1 56 38-101 439-494 (507)
236 1deq_A Fibrinogen (alpha chain 82.9 6.6 0.00023 37.8 9.9 71 287-367 63-133 (390)
237 3ghg_A Fibrinogen alpha chain; 82.8 6.3 0.00022 39.5 10.0 23 347-369 138-160 (562)
238 2v71_A Nuclear distribution pr 82.7 13 0.00045 32.3 11.0 65 288-358 21-85 (189)
239 2dfs_A Myosin-5A; myosin-V, in 82.4 11 0.00037 41.7 12.9 7 334-340 1031-1037(1080)
240 2oxj_A Hybrid alpha/beta pepti 82.2 2.9 9.8E-05 25.7 4.6 29 293-321 3-31 (34)
241 3tnu_B Keratin, type II cytosk 82.0 16 0.00054 29.6 10.8 67 288-357 40-106 (129)
242 3na7_A HP0958; flagellar bioge 81.1 15 0.0005 33.4 11.5 58 288-345 15-72 (256)
243 3viq_B Mating-type switching p 81.0 3.6 0.00012 31.1 5.9 30 334-363 36-65 (85)
244 3efg_A Protein SLYX homolog; x 80.9 5.8 0.0002 29.5 7.0 50 304-356 13-62 (78)
245 3c3g_A Alpha/beta peptide with 79.6 4 0.00014 24.9 4.6 28 294-321 3-30 (33)
246 1gd2_E Transcription factor PA 79.3 4.3 0.00015 29.6 5.7 24 301-324 25-48 (70)
247 3he5_A Synzip1; heterodimeric 79.2 10 0.00034 24.3 6.8 37 307-343 5-41 (49)
248 3c3f_A Alpha/beta peptide with 79.0 4.3 0.00015 24.9 4.6 28 294-321 4-31 (34)
249 1hjb_A Ccaat/enhancer binding 78.5 15 0.00051 27.9 8.7 57 288-345 20-76 (87)
250 2l5g_B Putative uncharacterize 78.0 6 0.00021 25.6 5.3 32 310-341 7-38 (42)
251 1kd8_A GABH AIV, GCN4 acid bas 77.8 5.6 0.00019 24.7 4.9 29 294-322 4-32 (36)
252 3cl3_D NF-kappa-B essential mo 77.7 7.7 0.00026 31.4 7.2 51 306-356 56-107 (130)
253 2g0c_A ATP-dependent RNA helic 77.6 4.6 0.00016 29.3 5.6 68 41-116 2-75 (76)
254 2wq1_A General control protein 77.4 5.1 0.00017 24.4 4.6 25 294-318 3-27 (33)
255 3m48_A General control protein 77.3 3.3 0.00011 25.3 3.7 27 294-320 3-29 (33)
256 1c1g_A Tropomyosin; contractIl 77.3 28 0.00095 30.4 12.0 58 285-342 21-78 (284)
257 3s9g_A Protein hexim1; cyclin 77.2 23 0.00078 27.3 9.5 52 305-356 37-88 (104)
258 3tnu_A Keratin, type I cytoske 77.2 24 0.00083 28.6 10.5 67 288-357 42-108 (131)
259 1c1g_A Tropomyosin; contractIl 77.0 37 0.0013 29.6 13.1 36 335-370 246-281 (284)
260 3tnu_B Keratin, type II cytosk 76.8 12 0.00042 30.3 8.6 57 304-360 35-92 (129)
261 4emc_A Monopolin complex subun 76.4 6.5 0.00022 34.1 6.9 50 296-345 11-60 (190)
262 3ghg_A Fibrinogen alpha chain; 76.2 10 0.00035 38.0 9.1 10 288-297 61-70 (562)
263 3tnu_A Keratin, type I cytoske 76.0 9.7 0.00033 31.0 7.7 57 304-360 37-94 (131)
264 3nmd_A CGMP dependent protein 75.8 10 0.00035 27.7 6.7 29 310-338 38-66 (72)
265 1uo4_A General control protein 75.6 4.6 0.00016 24.8 4.0 26 294-319 4-29 (34)
266 1t2k_D Cyclic-AMP-dependent tr 75.4 9.3 0.00032 26.7 6.4 39 303-341 20-58 (61)
267 2wt7_A Proto-oncogene protein 75.3 11 0.00039 26.5 6.9 41 302-342 20-60 (63)
268 1kd8_B GABH BLL, GCN4 acid bas 74.7 9.6 0.00033 23.7 5.4 28 294-321 4-31 (36)
269 4etp_A Kinesin-like protein KA 74.5 8.6 0.0003 37.6 8.2 52 292-343 4-55 (403)
270 1lwu_C Fibrinogen gamma chain; 74.4 6.9 0.00023 37.1 7.2 45 296-340 10-54 (323)
271 1m1j_C Fibrinogen gamma chain; 74.2 34 0.0012 33.4 12.3 27 316-342 88-114 (409)
272 1ci6_A Transcription factor AT 74.2 11 0.00037 26.7 6.5 14 305-318 37-50 (63)
273 1m1j_C Fibrinogen gamma chain; 72.3 56 0.0019 31.9 13.3 12 287-298 34-45 (409)
274 2akf_A Coronin-1A; coiled coil 72.0 4.1 0.00014 24.1 3.1 28 315-342 2-29 (32)
275 1d7m_A Cortexillin I; coiled-c 71.6 30 0.001 26.2 8.5 45 291-335 4-48 (101)
276 1gu4_A CAAT/enhancer binding p 71.6 5.6 0.00019 29.6 4.6 37 309-345 40-76 (78)
277 3a7o_A Autophagy protein 16; c 71.6 19 0.00064 26.0 7.1 27 289-315 16-42 (75)
278 3cvf_A Homer-3, homer protein 71.4 13 0.00046 27.6 6.6 47 297-343 12-58 (79)
279 2v4h_A NF-kappa-B essential mo 70.6 27 0.00094 27.5 8.6 42 287-328 27-68 (110)
280 1x79_B RAB GTPase binding effe 69.6 29 0.001 27.5 8.7 11 335-345 61-71 (112)
281 2hy6_A General control protein 69.0 11 0.00037 23.2 4.6 23 295-317 5-27 (34)
282 1t3j_A Mitofusin 1; coiled coi 68.7 18 0.0006 28.0 7.0 30 300-329 49-78 (96)
283 3t98_B Nucleoporin NUP58/NUP45 68.4 14 0.00048 28.4 6.4 71 292-369 13-84 (93)
284 3k29_A Putative uncharacterize 68.0 53 0.0018 27.8 10.4 48 291-338 78-125 (169)
285 1ci6_A Transcription factor AT 68.0 17 0.00057 25.7 6.4 41 303-343 21-61 (63)
286 3cve_A Homer protein homolog 1 68.0 27 0.00093 25.4 7.5 46 298-343 7-52 (72)
287 2bni_A General control protein 67.9 7.7 0.00026 23.8 3.8 24 294-317 4-27 (34)
288 2wt7_A Proto-oncogene protein 67.9 17 0.00057 25.6 6.4 58 316-374 6-63 (63)
289 1m1j_B Fibrinogen beta chain; 66.4 91 0.0031 30.9 13.5 10 288-297 97-106 (464)
290 2b9c_A Striated-muscle alpha t 66.0 56 0.0019 27.1 10.5 55 299-356 67-121 (147)
291 3o0z_A RHO-associated protein 65.7 63 0.0021 27.5 12.9 27 334-360 98-124 (168)
292 1m1j_B Fibrinogen beta chain; 65.5 74 0.0025 31.6 12.6 17 278-297 97-113 (464)
293 3okq_A BUD site selection prot 65.0 57 0.002 26.8 10.2 29 322-350 103-131 (141)
294 4etp_A Kinesin-like protein KA 64.7 20 0.00068 35.0 8.4 53 288-340 7-59 (403)
295 1l8d_A DNA double-strand break 64.1 48 0.0016 25.6 10.9 33 327-362 65-97 (112)
296 2xus_A Breast cancer metastasi 63.3 16 0.00056 24.5 5.1 30 333-362 13-44 (49)
297 3a7p_A Autophagy protein 16; c 63.1 66 0.0022 26.8 11.1 23 293-315 84-106 (152)
298 1deq_A Fibrinogen (alpha chain 62.9 61 0.0021 31.2 10.9 11 353-363 166-176 (390)
299 3swf_A CGMP-gated cation chann 62.7 42 0.0014 24.5 7.9 46 296-344 5-50 (74)
300 3efg_A Protein SLYX homolog; x 61.9 19 0.00063 26.7 5.8 39 305-343 21-59 (78)
301 2hy6_A General control protein 61.6 17 0.00058 22.3 4.4 27 315-341 4-30 (34)
302 1jnm_A Proto-oncogene C-JUN; B 61.4 31 0.0011 24.1 6.8 18 303-320 20-37 (62)
303 1hjb_A Ccaat/enhancer binding 60.5 28 0.00094 26.4 6.7 42 292-333 37-78 (87)
304 1t2k_D Cyclic-AMP-dependent tr 60.5 24 0.00083 24.5 6.0 35 292-326 23-57 (61)
305 3na7_A HP0958; flagellar bioge 60.0 85 0.0029 28.2 11.4 10 274-283 90-99 (256)
306 3mq9_A Bone marrow stromal ant 59.9 43 0.0015 32.8 10.1 22 324-345 395-416 (471)
307 2wq1_A General control protein 59.7 20 0.00067 21.9 4.4 21 304-324 6-26 (33)
308 3u06_A Protein claret segregat 59.3 25 0.00086 34.4 8.0 48 296-343 8-55 (412)
309 2r2v_A GCN4 leucine zipper; co 59.0 20 0.00068 22.0 4.4 12 309-320 12-23 (34)
310 2r2v_A GCN4 leucine zipper; co 59.0 21 0.00072 21.9 4.6 25 295-319 5-29 (34)
311 3vkg_A Dynein heavy chain, cyt 58.9 65 0.0022 39.8 12.7 16 346-361 1990-2005(3245)
312 1kd8_A GABH AIV, GCN4 acid bas 58.4 20 0.00069 22.2 4.4 28 315-342 4-31 (36)
313 2oqq_A Transcription factor HY 58.4 32 0.0011 22.1 5.6 26 295-320 7-32 (42)
314 3ol1_A Vimentin; structural ge 58.2 48 0.0016 26.4 8.2 56 288-343 38-100 (119)
315 1i84_S Smooth muscle myosin he 57.9 56 0.0019 36.3 11.5 19 47-65 546-564 (1184)
316 2w6a_A ARF GTPase-activating p 56.6 47 0.0016 23.1 7.9 46 308-353 16-61 (63)
317 2efr_A General control protein 55.7 91 0.0031 26.1 12.3 69 284-355 70-145 (155)
318 3he5_B Synzip2; heterodimeric 55.5 39 0.0013 21.8 6.3 38 305-342 10-47 (52)
319 3mq7_A Bone marrow stromal ant 54.3 80 0.0027 25.1 11.8 31 315-345 53-83 (121)
320 1nkp_B MAX protein, MYC proto- 53.7 12 0.0004 27.9 3.6 20 306-325 48-67 (83)
321 3tul_A Cell invasion protein S 53.6 39 0.0013 28.0 6.9 70 288-360 24-93 (158)
322 1gu4_A CAAT/enhancer binding p 53.5 39 0.0013 25.0 6.3 37 294-330 39-75 (78)
323 1m1j_A Fibrinogen alpha subuni 52.8 88 0.003 30.8 10.3 30 340-369 132-161 (491)
324 2ke4_A CDC42-interacting prote 52.8 77 0.0026 24.4 8.7 58 288-345 19-88 (98)
325 1x79_B RAB GTPase binding effe 52.5 85 0.0029 24.8 10.1 46 300-345 40-89 (112)
326 2l5g_B Putative uncharacterize 52.4 31 0.0011 22.3 4.8 24 297-320 15-38 (42)
327 3c3f_A Alpha/beta peptide with 52.2 27 0.00093 21.3 4.2 27 300-326 3-29 (34)
328 3swk_A Vimentin; cytoskeleton, 52.1 52 0.0018 24.6 7.0 55 288-342 18-79 (86)
329 3m91_A Proteasome-associated A 51.9 52 0.0018 22.2 6.7 40 299-338 10-49 (51)
330 2v66_B Nuclear distribution pr 51.7 87 0.003 24.7 9.0 30 314-343 37-66 (111)
331 3vkg_A Dynein heavy chain, cyt 51.3 1.2E+02 0.0041 37.6 13.3 35 310-344 2019-2053(3245)
332 3ljm_A Coil Ser L9C; de novo d 51.2 31 0.0011 20.0 4.2 21 304-324 7-27 (31)
333 1t6f_A Geminin; coiled-coil, c 51.1 18 0.00062 22.5 3.4 27 336-362 10-36 (37)
334 3u06_A Protein claret segregat 50.7 42 0.0014 32.7 8.0 54 287-340 6-59 (412)
335 1wt6_A Myotonin-protein kinase 49.9 76 0.0026 23.5 8.4 26 318-343 44-69 (81)
336 1fmh_A General control protein 49.3 35 0.0012 20.0 4.3 14 305-318 15-28 (33)
337 2bni_A General control protein 48.3 29 0.00099 21.3 3.9 28 300-327 3-30 (34)
338 1cii_A Colicin IA; bacteriocin 47.9 2.2E+02 0.0074 28.2 13.2 64 278-341 350-413 (602)
339 1vp7_A Exodeoxyribonuclease VI 47.0 76 0.0026 24.6 7.3 33 336-368 58-90 (100)
340 2jee_A YIIU; FTSZ, septum, coi 46.6 87 0.003 23.3 10.1 56 289-344 11-66 (81)
341 2yko_A LINE-1 ORF1P; RNA-bindi 46.2 44 0.0015 30.0 6.6 40 287-326 9-48 (233)
342 1gmj_A ATPase inhibitor; coile 46.2 78 0.0027 23.7 6.9 8 275-282 21-28 (84)
343 2ocy_A RAB guanine nucleotide 46.1 1.3E+02 0.0045 25.1 9.7 33 331-363 81-113 (154)
344 2no2_A HIP-I, huntingtin-inter 45.7 1.1E+02 0.0036 23.9 9.8 24 335-358 70-93 (107)
345 1ebo_A Ebola virus envelope pr 45.6 74 0.0025 24.7 6.9 70 296-372 4-76 (131)
346 1lwu_C Fibrinogen gamma chain; 45.4 38 0.0013 32.0 6.4 30 296-325 17-46 (323)
347 3m48_A General control protein 45.4 32 0.0011 21.0 3.8 27 302-328 4-30 (33)
348 1kd8_B GABH BLL, GCN4 acid bas 44.9 50 0.0017 20.5 4.7 29 315-343 4-32 (36)
349 1uii_A Geminin; human, DNA rep 44.9 76 0.0026 23.7 6.7 29 336-364 49-77 (83)
350 1jnm_A Proto-oncogene C-JUN; B 44.7 75 0.0026 22.0 7.2 41 333-374 22-62 (62)
351 1uo4_A General control protein 44.7 33 0.0011 21.0 3.8 27 301-327 4-30 (34)
352 3mov_A Lamin-B1; LMNB1, B-type 44.2 28 0.00097 26.7 4.5 17 307-323 39-55 (95)
353 3i00_A HIP-I, huntingtin-inter 43.8 1.2E+02 0.0042 24.1 8.7 28 300-327 35-62 (120)
354 3uun_A Dystrophin; triple heli 43.3 1E+02 0.0035 23.2 9.2 52 295-346 37-98 (119)
355 2z5i_A TM, general control pro 43.2 59 0.002 21.9 5.5 20 304-323 11-30 (52)
356 3c3g_A Alpha/beta peptide with 42.3 49 0.0017 20.1 4.2 21 304-324 6-26 (33)
357 3he5_A Synzip1; heterodimeric 42.2 65 0.0022 20.5 6.9 32 309-340 14-45 (49)
358 3ghg_B Fibrinogen beta chain; 41.6 1.1E+02 0.0036 30.4 9.1 32 338-369 161-192 (461)
359 2e7s_A RAB guanine nucleotide 41.0 39 0.0013 27.7 5.0 34 331-364 69-102 (135)
360 3cvf_A Homer-3, homer protein 40.9 73 0.0025 23.6 6.0 29 289-317 25-53 (79)
361 1nkp_A C-MYC, MYC proto-oncoge 40.8 34 0.0012 25.7 4.4 20 305-324 52-71 (88)
362 3m9b_A Proteasome-associated A 40.2 32 0.0011 31.2 4.8 17 336-352 78-94 (251)
363 3u0c_A Invasin IPAB, 62 kDa an 38.8 1.8E+02 0.0061 24.6 10.2 40 324-363 122-162 (201)
364 3bas_A Myosin heavy chain, str 38.7 1.2E+02 0.0041 22.6 10.8 34 288-321 18-51 (89)
365 3q8t_A Beclin-1; autophagy, AT 38.3 1.3E+02 0.0044 22.9 12.6 53 304-359 31-83 (96)
366 4e8u_A Putative uncharacterize 38.3 56 0.0019 27.9 5.8 46 51-98 33-81 (172)
367 2ve7_A Kinetochore protein HEC 38.2 55 0.0019 30.7 6.4 52 288-342 175-226 (315)
368 2k48_A Nucleoprotein; viral pr 38.0 1.4E+02 0.0048 23.2 9.1 8 314-321 55-62 (107)
369 1ise_A Ribosome recycling fact 37.8 72 0.0025 27.5 6.5 15 329-343 154-168 (185)
370 3o0z_A RHO-associated protein 37.5 1.9E+02 0.0064 24.5 11.8 13 309-321 94-106 (168)
371 1is1_A Ribosome recycling fact 37.5 73 0.0025 27.5 6.5 14 330-343 155-168 (185)
372 1s94_A S-syntaxin; three helix 37.4 1.5E+02 0.0052 24.8 8.7 29 315-343 81-109 (180)
373 1wqg_A Ribosome recycling fact 37.0 75 0.0026 27.4 6.5 14 330-343 155-168 (185)
374 1dd5_A Ribosome recycling fact 37.0 75 0.0026 27.4 6.5 15 329-343 154-168 (185)
375 1d7m_A Cortexillin I; coiled-c 36.8 1.3E+02 0.0046 22.6 9.1 32 283-314 24-55 (101)
376 3i00_A HIP-I, huntingtin-inter 36.7 1.6E+02 0.0055 23.4 9.4 32 317-348 31-62 (120)
377 3bas_A Myosin heavy chain, str 36.6 1.3E+02 0.0045 22.4 10.5 14 348-361 64-77 (89)
378 3m9b_A Proteasome-associated A 36.2 40 0.0014 30.6 4.8 36 300-335 56-91 (251)
379 1s1c_X RHO-associated, coiled- 36.1 1.2E+02 0.0041 21.9 7.7 15 307-321 15-29 (71)
380 1ge9_A Ribosome recycling fact 36.1 50 0.0017 28.5 5.3 13 331-343 155-167 (184)
381 2aze_B Transcription factor E2 35.8 77 0.0026 24.7 5.9 30 288-317 10-39 (106)
382 4egx_A Kinesin-like protein KI 35.7 80 0.0028 27.0 6.6 38 298-338 12-49 (184)
383 4dnd_A Syntaxin-10, SYN10; str 35.1 1.8E+02 0.006 23.5 8.3 19 321-339 107-125 (130)
384 4fla_A Regulation of nuclear P 34.9 1.9E+02 0.0067 23.9 11.2 33 334-366 115-147 (152)
385 1t3j_A Mitofusin 1; coiled coi 34.8 1.2E+02 0.0041 23.2 6.6 12 309-320 51-62 (96)
386 2oxj_A Hybrid alpha/beta pepti 34.7 58 0.002 19.9 3.8 25 316-340 5-29 (34)
387 3e7k_A TRPM7 channel; coiled-c 34.3 58 0.002 22.4 4.2 25 337-361 10-34 (56)
388 1jcd_A Major outer membrane li 34.1 1.1E+02 0.0037 20.7 6.4 11 341-351 33-43 (52)
389 1ez3_A Syntaxin-1A; three heli 34.0 1.6E+02 0.0056 22.8 8.1 31 314-344 49-79 (127)
390 1nlw_A MAD protein, MAX dimeri 34.0 1.4E+02 0.0047 21.9 8.0 17 305-321 47-63 (80)
391 2w6b_A RHO guanine nucleotide 33.8 1.1E+02 0.0038 20.8 6.6 24 305-328 17-40 (56)
392 2eqb_B RAB guanine nucleotide 33.1 1.6E+02 0.0056 22.5 9.5 31 291-321 26-56 (97)
393 2p22_C Protein SRN2; endosome, 32.8 2.3E+02 0.0079 24.4 9.1 32 308-339 86-117 (192)
394 3iv1_A Tumor susceptibility ge 32.7 1.5E+02 0.005 21.8 9.0 44 287-330 14-57 (78)
395 3s9g_A Protein hexim1; cyclin 32.6 1.7E+02 0.0058 22.5 8.1 71 289-359 11-84 (104)
396 2lw1_A ABC transporter ATP-bin 32.5 1.5E+02 0.0052 21.9 7.0 20 305-324 29-48 (89)
397 2yy0_A C-MYC-binding protein; 32.4 34 0.0011 23.3 2.8 22 300-321 21-42 (53)
398 1eh1_A Ribosome recycling fact 32.1 73 0.0025 27.5 5.6 17 327-343 153-169 (185)
399 1fxk_A Prefoldin; archaeal pro 31.9 1.6E+02 0.0056 22.1 7.7 31 309-339 69-99 (107)
400 2dgc_A Protein (GCN4); basic d 31.8 72 0.0025 22.3 4.6 17 302-318 27-43 (63)
401 2oeq_A Protein of unknown func 31.5 1.9E+02 0.0064 22.7 8.0 61 307-368 41-105 (122)
402 2yko_A LINE-1 ORF1P; RNA-bindi 31.3 99 0.0034 27.7 6.5 41 307-347 8-48 (233)
403 4dyl_A Tyrosine-protein kinase 31.1 1.7E+02 0.0057 28.2 8.8 70 288-359 313-384 (406)
404 2yy0_A C-MYC-binding protein; 31.0 88 0.003 21.2 4.8 27 288-314 23-49 (53)
405 3swy_A Cyclic nucleotide-gated 31.0 1.1E+02 0.0039 20.1 5.7 30 296-325 3-32 (46)
406 1gk4_A Vimentin; intermediate 30.9 1.6E+02 0.0054 21.7 9.2 18 307-324 28-45 (84)
407 3a2a_A Voltage-gated hydrogen 30.8 1.3E+02 0.0044 20.6 6.2 34 279-312 13-46 (58)
408 1dh3_A Transcription factor CR 30.8 1.3E+02 0.0043 20.4 6.3 12 305-316 22-33 (55)
409 3he5_B Synzip2; heterodimeric 30.6 1.1E+02 0.0036 19.8 4.7 32 291-322 17-48 (52)
410 2fxo_A Myosin heavy chain, car 30.5 2.1E+02 0.007 22.8 11.4 75 290-364 12-86 (129)
411 1cxz_B Protein (PKN); protein- 30.3 1.7E+02 0.0059 21.9 7.2 55 305-362 28-82 (86)
412 4ath_A MITF, microphthalmia-as 30.2 1.7E+02 0.0058 21.8 7.1 37 305-341 39-75 (83)
413 1yzm_A FYVE-finger-containing 30.2 1.2E+02 0.004 20.5 5.1 21 298-318 28-48 (51)
414 3oja_A Leucine-rich immune mol 30.2 3.3E+02 0.011 26.4 11.0 13 347-359 449-461 (487)
415 4dac_A Computationally designe 30.0 45 0.0015 18.8 2.5 19 304-322 7-25 (28)
416 3ni0_A Bone marrow stromal ant 30.0 1.3E+02 0.0045 22.9 6.0 37 289-325 51-87 (99)
417 1zxa_A CGMP-dependent protein 29.9 71 0.0024 22.9 4.3 19 324-342 37-55 (67)
418 3iyk_A VP5; icosahedral virus; 29.9 3.2E+02 0.011 27.2 10.3 39 305-343 139-177 (526)
419 2zqm_A Prefoldin beta subunit 29.7 1.9E+02 0.0064 22.1 8.0 28 311-338 76-103 (117)
420 3obv_E Protein diaphanous homo 29.6 63 0.0022 31.9 5.5 72 300-371 283-354 (457)
421 1f5n_A Interferon-induced guan 29.6 3.4E+02 0.012 27.6 11.1 20 304-323 500-519 (592)
422 3n7n_E Monopolin complex subun 29.6 11 0.00039 28.7 0.0 38 330-367 47-84 (95)
423 3q8t_A Beclin-1; autophagy, AT 29.2 1.9E+02 0.0064 22.0 12.5 58 301-361 35-92 (96)
424 2e7s_A RAB guanine nucleotide 28.9 62 0.0021 26.5 4.3 35 288-322 43-77 (135)
425 1x8y_A Lamin A/C; structural p 28.7 99 0.0034 23.0 5.2 19 306-324 29-47 (86)
426 2z5i_A TM, general control pro 28.5 1.4E+02 0.0046 20.1 5.9 41 322-365 8-48 (52)
427 4fi5_A Nucleoprotein; structur 28.3 2.2E+02 0.0074 22.4 8.8 14 331-344 67-80 (113)
428 3gp4_A Transcriptional regulat 28.2 2.3E+02 0.0078 22.9 7.9 51 289-339 79-129 (142)
429 2xdj_A Uncharacterized protein 28.0 1.8E+02 0.0063 21.5 7.9 37 305-341 27-63 (83)
430 1tu3_F RAB GTPase binding effe 28.0 84 0.0029 22.9 4.4 36 305-340 12-54 (79)
431 3mq9_A Bone marrow stromal ant 27.7 4.2E+02 0.014 25.5 13.4 57 300-359 399-466 (471)
432 1wle_A Seryl-tRNA synthetase; 27.3 1.9E+02 0.0064 28.9 8.5 28 344-371 124-151 (501)
433 2pih_A Protein YMCA; regulate 27.3 2.6E+02 0.0088 22.9 9.8 59 308-367 43-106 (151)
434 3qne_A Seryl-tRNA synthetase, 27.3 3.1E+02 0.011 27.2 10.0 18 304-321 46-63 (485)
435 2eqb_B RAB guanine nucleotide 27.1 2.1E+02 0.0072 21.9 11.4 73 288-363 9-81 (97)
436 2dq0_A Seryl-tRNA synthetase; 27.0 2.9E+02 0.0098 27.1 9.8 21 302-322 42-62 (455)
437 2dq0_A Seryl-tRNA synthetase; 27.0 58 0.002 32.2 4.7 41 342-382 75-115 (455)
438 3lpe_A Putative transcription 26.9 1.3E+02 0.0046 22.4 5.8 34 66-103 40-73 (92)
439 3r6n_A Desmoplakin; spectrin r 26.9 3.8E+02 0.013 26.2 10.6 74 279-353 37-110 (450)
440 3pdy_A Plectin; cytoskeleton, 26.8 2.9E+02 0.01 23.4 12.2 79 279-357 40-126 (210)
441 1dh3_A Transcription factor CR 26.5 1.3E+02 0.0044 20.4 5.1 25 335-359 24-48 (55)
442 3qne_A Seryl-tRNA synthetase, 26.5 75 0.0026 31.7 5.4 20 345-364 80-99 (485)
443 4gfq_A Ribosome-recycling fact 26.5 1.8E+02 0.0062 25.5 7.2 14 330-343 179-192 (209)
444 3f6n_A Virion-associated prote 26.2 1.3E+02 0.0045 23.9 5.6 21 318-338 40-60 (129)
445 2wuj_A Septum site-determining 26.1 90 0.0031 21.3 4.2 28 293-320 29-56 (57)
446 1dip_A Delta-sleep-inducing pe 26.0 67 0.0023 23.3 3.5 30 299-328 16-45 (78)
447 3mtu_A Tropomyosin alpha-1 cha 25.9 1.9E+02 0.0064 20.9 7.3 26 318-343 19-44 (75)
448 1m1j_A Fibrinogen alpha subuni 25.9 4.8E+02 0.017 25.6 11.4 51 288-345 62-112 (491)
449 1vcs_A Vesicle transport throu 25.9 2.2E+02 0.0076 21.7 7.6 21 342-362 73-93 (102)
450 2dgc_A Protein (GCN4); basic d 25.9 1.7E+02 0.0058 20.4 5.7 29 331-359 28-56 (63)
451 2oqq_A Transcription factor HY 25.6 1.4E+02 0.0047 19.2 5.9 21 302-322 7-27 (42)
452 3zcc_A HAMP, osmolarity sensor 25.5 1.9E+02 0.0065 20.8 7.9 21 350-370 94-114 (114)
453 2exu_A Transcription initiatio 25.5 1.3E+02 0.0043 26.3 6.1 27 79-105 148-174 (200)
454 3ghg_C Fibrinogen gamma chain; 25.1 2.6E+02 0.009 27.1 8.8 10 357-366 122-131 (411)
455 2kes_A Synphilin-1; synphillin 24.9 1.4E+02 0.0049 19.2 6.0 17 299-315 19-35 (48)
456 3v1a_A Computational design, M 24.9 82 0.0028 21.0 3.6 18 299-316 28-45 (48)
457 4gkw_A Spindle assembly abnorm 24.7 2.8E+02 0.0095 22.4 10.0 44 288-338 22-65 (167)
458 2w6b_A RHO guanine nucleotide 24.2 1.7E+02 0.0059 19.9 5.7 32 289-320 15-46 (56)
459 2ic9_A Nucleocapsid protein; h 24.2 2.4E+02 0.0082 21.5 8.8 9 313-321 24-32 (96)
460 3lf9_A 4E10_D0_1IS1A_001_C (T1 23.9 1.4E+02 0.0049 23.8 5.5 13 331-343 84-96 (121)
461 3fry_A Probable copper-exporti 23.7 1.7E+02 0.006 19.7 5.8 55 39-99 6-60 (73)
462 3hhm_B NISH2 P85alpha; PI3KCA, 23.7 2.6E+02 0.009 26.6 8.5 48 303-350 210-257 (373)
463 1ik9_A DNA repair protein XRCC 23.6 3.7E+02 0.013 23.5 9.9 49 287-345 135-183 (213)
464 3tso_C RAB11 family-interactin 23.3 1.6E+02 0.0055 21.4 5.1 43 306-351 15-57 (75)
465 2p22_C Protein SRN2; endosome, 23.2 3.6E+02 0.012 23.2 10.0 9 334-342 101-109 (192)
466 1ses_A Seryl-tRNA synthetase; 23.2 1.2E+02 0.004 29.6 6.0 31 342-372 70-100 (421)
467 3lhp_S 4E10_D0_1ISEA_004_N (T9 22.7 1.2E+02 0.004 24.4 4.8 21 307-327 48-69 (123)
468 1go4_E MAD1 (mitotic arrest de 22.5 2.7E+02 0.0091 21.4 9.2 68 293-360 14-95 (100)
469 3fpp_A Macrolide-specific effl 22.3 2.4E+02 0.0083 25.7 7.9 76 287-362 65-140 (341)
470 2fic_A Bridging integrator 1; 22.2 3.9E+02 0.013 23.2 10.1 14 357-370 219-232 (251)
471 3ts2_A Protein LIN-28 homolog 22.2 15 0.0005 30.7 -0.7 28 54-88 2-29 (148)
472 2ic6_A Nucleocapsid protein; h 22.1 2.4E+02 0.0081 20.7 9.0 16 348-363 57-72 (78)
473 3mud_A DNA repair protein XRCC 22.1 3.4E+02 0.012 23.1 7.8 28 301-328 131-158 (175)
474 1zxa_A CGMP-dependent protein 21.9 1.8E+02 0.0061 20.7 5.1 32 291-322 25-56 (67)
475 1wqg_A Ribosome recycling fact 21.8 3.7E+02 0.013 23.0 8.3 20 318-337 122-141 (185)
476 3mud_A DNA repair protein XRCC 21.6 2.3E+02 0.008 24.1 6.7 44 319-365 128-171 (175)
477 1v9d_A Diaphanous protein homo 21.6 1.1E+02 0.0038 28.7 5.3 20 351-370 263-282 (340)
478 4efa_E V-type proton ATPase su 21.5 4E+02 0.014 23.1 13.5 22 359-380 121-142 (233)
479 1yke_B RNA polymerase II holoe 21.5 2.6E+02 0.0088 23.1 7.0 60 283-342 67-129 (151)
480 2js5_A Uncharacterized protein 21.5 2.3E+02 0.008 20.4 6.5 25 333-357 42-66 (71)
481 3q0x_A Centriole protein; cent 21.4 4.3E+02 0.015 23.4 9.4 45 309-353 175-219 (228)
482 1lrz_A FEMA, factor essential 21.4 2.7E+02 0.0091 26.7 8.3 45 298-343 247-291 (426)
483 1m3w_A H10H24; four-helix bund 21.4 84 0.0029 18.3 2.7 23 336-360 7-29 (32)
484 1z0k_B FYVE-finger-containing 21.3 76 0.0026 22.8 3.1 21 298-318 46-66 (69)
485 1eh1_A Ribosome recycling fact 21.2 3.9E+02 0.013 22.8 9.1 10 353-362 155-164 (185)
486 2qyw_A Vesicle transport throu 21.0 2.8E+02 0.0095 21.1 9.4 45 314-360 51-95 (102)
487 1ykh_B RNA polymerase II holoe 21.0 3E+02 0.01 22.0 7.2 26 300-325 87-112 (132)
488 3qh9_A Liprin-beta-2; coiled-c 20.9 2.6E+02 0.0088 20.6 9.4 66 278-343 13-78 (81)
489 2xzr_A Immunoglobulin-binding 20.9 2.8E+02 0.0097 21.1 8.0 51 278-328 56-106 (114)
490 1is1_A Ribosome recycling fact 20.9 3.9E+02 0.013 22.8 8.3 74 284-359 108-182 (185)
491 3fpp_A Macrolide-specific effl 20.8 3.1E+02 0.01 25.0 8.3 79 284-362 69-147 (341)
492 4dk0_A Putative MACA; alpha-ha 20.7 4.6E+02 0.016 24.0 9.7 76 287-362 66-148 (369)
493 3h7h_B Transcription elongatio 20.6 1.4E+02 0.0049 23.1 4.9 59 38-100 4-71 (106)
494 2wvr_A Geminin; DNA replicatio 20.6 3.5E+02 0.012 23.5 7.7 71 279-349 110-180 (209)
495 1ise_A Ribosome recycling fact 20.3 4E+02 0.014 22.7 8.6 74 284-359 108-182 (185)
496 2pms_C Pneumococcal surface pr 20.1 2.5E+02 0.0087 22.5 6.3 64 298-364 61-124 (125)
497 1use_A VAsp, vasodilator-stimu 20.1 1.4E+02 0.0046 19.6 3.8 22 303-324 13-34 (45)
No 1
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.89 E-value=5.5e-22 Score=200.26 Aligned_cols=85 Identities=25% Similarity=0.497 Sum_probs=79.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+.||+++|..+|.+||.|..|.|+.+..+ +++|||||+|.+.++|..||..|||+.|+|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 345689999999999999999999999999999999998766 8899999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 179 a~~~~~ 184 (437)
T 3pgw_S 179 ERGRTV 184 (437)
T ss_pred eCCCCC
Confidence 987544
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=146.25 Aligned_cols=81 Identities=27% Similarity=0.501 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
..+++|||+|||+++|+++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|||..|+|++|.|.+|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999876 89999999999999999999999999999999999999
Q ss_pred cc
Q 016629 116 AT 117 (386)
Q Consensus 116 ~~ 117 (386)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 3
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.79 E-value=7.3e-19 Score=152.71 Aligned_cols=87 Identities=22% Similarity=0.400 Sum_probs=80.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....+.++|||+|||+.+|+++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.||..|+|..|.|+.|.|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34567899999999999999999999999999999999999887 78999999999999999999999999999999999
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.++.+...
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987554
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=141.89 Aligned_cols=82 Identities=18% Similarity=0.233 Sum_probs=77.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
++..+|||+|||+.+++++|.++|++||.|..|.|+.++.+ +++|||||+|.+.++|+.|+..|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 46789999999999999999999999999999999999886 89999999999999999999999999999999999998
Q ss_pred ccc
Q 016629 116 ATR 118 (386)
Q Consensus 116 ~~~ 118 (386)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 5
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=1e-18 Score=146.22 Aligned_cols=89 Identities=24% Similarity=0.383 Sum_probs=81.3
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
+....+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 95 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 95 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 344566889999999999999999999999999999999998766 8899999999999999999999999999999999
Q ss_pred EEeecccCcC
Q 016629 112 VSEVATRGRK 121 (386)
Q Consensus 112 V~~a~~~~~~ 121 (386)
|.++.+....
T Consensus 96 v~~a~~~~~~ 105 (126)
T 3ex7_B 96 VDWCFVRGPP 105 (126)
T ss_dssp EEESEESSSC
T ss_pred EEEecCCCCC
Confidence 9999876543
No 6
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.76 E-value=5.1e-18 Score=144.31 Aligned_cols=87 Identities=33% Similarity=0.543 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+.+++++|.++|+.||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..|.|+.|.|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999999876 789999999999999999999999999999999999
Q ss_pred eecccCcC
Q 016629 114 EVATRGRK 121 (386)
Q Consensus 114 ~a~~~~~~ 121 (386)
++.+....
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=135.71 Aligned_cols=85 Identities=34% Similarity=0.658 Sum_probs=79.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
.++.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|++|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 356789999999999999999999999999999999999876 8999999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 82 a~~~~~ 87 (95)
T 2dnz_A 82 VTERLD 87 (95)
T ss_dssp SSCCCC
T ss_pred cccccC
Confidence 987654
No 8
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.76 E-value=4.5e-18 Score=140.79 Aligned_cols=86 Identities=30% Similarity=0.657 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+++++++|.++|++||.|..|.|+.+..+.++|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 45668899999999999999999999999999999999998558999999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 986543
No 9
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=4e-18 Score=132.91 Aligned_cols=83 Identities=29% Similarity=0.541 Sum_probs=75.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 82 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 356789999999999999999999999999999999998766 8899999999999999999999999999999999999
Q ss_pred eccc
Q 016629 115 VATR 118 (386)
Q Consensus 115 a~~~ 118 (386)
+.++
T Consensus 83 a~~k 86 (87)
T 3bs9_A 83 ATRK 86 (87)
T ss_dssp EC--
T ss_pred cCCC
Confidence 9764
No 10
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.5e-18 Score=135.18 Aligned_cols=86 Identities=27% Similarity=0.517 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999998855 8999999999999999999999999999999999999
Q ss_pred ecccCcC
Q 016629 115 VATRGRK 121 (386)
Q Consensus 115 a~~~~~~ 121 (386)
+.+....
T Consensus 85 a~~~~~~ 91 (99)
T 1whw_A 85 STIKKEA 91 (99)
T ss_dssp CCCCSTT
T ss_pred cCCCccc
Confidence 9876553
No 11
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.1e-18 Score=138.12 Aligned_cols=88 Identities=35% Similarity=0.537 Sum_probs=81.2
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
+....+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 345567899999999999999999999999999999999998876 8899999999999999999999999999999999
Q ss_pred EEeecccCc
Q 016629 112 VSEVATRGR 120 (386)
Q Consensus 112 V~~a~~~~~ 120 (386)
|.++.+...
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999986544
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.8e-18 Score=137.99 Aligned_cols=88 Identities=30% Similarity=0.467 Sum_probs=81.1
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34566899999999999999999999999999999999998866 89999999999999999999999999999999999
Q ss_pred EeecccCcC
Q 016629 113 SEVATRGRK 121 (386)
Q Consensus 113 ~~a~~~~~~ 121 (386)
.++.+....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999876543
No 13
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=4.4e-18 Score=135.28 Aligned_cols=84 Identities=26% Similarity=0.473 Sum_probs=78.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEE-EEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV-KIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
.+.++|||+|||+.+++++|..+|++||.|..| .|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 99998666 8899999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987554
No 14
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.2e-18 Score=136.39 Aligned_cols=86 Identities=22% Similarity=0.428 Sum_probs=80.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 4566899999999999999999999999999999999999766 899999999999999999999999999999999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
++.+...
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987654
No 15
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.75 E-value=1.9e-17 Score=136.14 Aligned_cols=87 Identities=28% Similarity=0.522 Sum_probs=80.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+.+++++|.++|..||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4556889999999999999999999999999999999999766 889999999999999999999999999999999999
Q ss_pred eecccCcC
Q 016629 114 EVATRGRK 121 (386)
Q Consensus 114 ~a~~~~~~ 121 (386)
++.+....
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876543
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.5e-18 Score=136.36 Aligned_cols=86 Identities=27% Similarity=0.466 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 456899999999999999999999999999999999998776 8999999999999999999999999999999999999
Q ss_pred ecccCcC
Q 016629 115 VATRGRK 121 (386)
Q Consensus 115 a~~~~~~ 121 (386)
+.+....
T Consensus 89 a~~~~~~ 95 (102)
T 2cqb_A 89 AKPMRIK 95 (102)
T ss_dssp CCCCCCC
T ss_pred CCCCCCC
Confidence 9876543
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=8.1e-18 Score=134.72 Aligned_cols=86 Identities=31% Similarity=0.589 Sum_probs=79.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.|+. |+|..|+|+.|.|.
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~ 84 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVK 84 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEE
Confidence 3456789999999999999999999999999999999998776 789999999999999999999 99999999999999
Q ss_pred eecccCcC
Q 016629 114 EVATRGRK 121 (386)
Q Consensus 114 ~a~~~~~~ 121 (386)
++.+....
T Consensus 85 ~a~~~~~~ 92 (99)
T 2dgs_A 85 RAEPRDSK 92 (99)
T ss_dssp ECCCCCCC
T ss_pred ECCCCccc
Confidence 99876543
No 18
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.74 E-value=9.3e-18 Score=129.64 Aligned_cols=80 Identities=26% Similarity=0.552 Sum_probs=75.7
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeeccc
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~ 118 (386)
++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|++|.|.++.+.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 58999999999999999999999999999999998766 88999999999999999999999999999999999999865
Q ss_pred C
Q 016629 119 G 119 (386)
Q Consensus 119 ~ 119 (386)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 19
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-18 Score=137.38 Aligned_cols=82 Identities=21% Similarity=0.366 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhc-CCceeccEEEEEEee
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRVSEV 115 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l-~g~~i~Gr~L~V~~a 115 (386)
.++|||+|||+++|+++|.++|++|| .|..|.|+.++.+ .++|||||+|.+.++|+.|+..| ++..|+|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 8999999999887 89999999999999999999987 456799999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87654
No 20
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9.4e-18 Score=133.97 Aligned_cols=84 Identities=24% Similarity=0.531 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCC---C-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS---T-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~---~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
.+.++|||+|||+.+++++|.++|++||.|..|.|+.++. + .++|||||+|.+.++|+.|+..|+|..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999998776 4 68999999999999999999999999999999999
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.++.+...
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99987554
No 21
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=9.3e-18 Score=133.92 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L 110 (386)
+....++|||+|||+.+++++|+ .+|++||.|..|.|+.++.+ +|||||+|.+.++|+.|+..|||..|+|++|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34567899999999999999999 99999999999999988776 8999999999999999999999999999999
Q ss_pred EEEeecccCc
Q 016629 111 RVSEVATRGR 120 (386)
Q Consensus 111 ~V~~a~~~~~ 120 (386)
.|.++.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976554
No 22
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=133.46 Aligned_cols=85 Identities=28% Similarity=0.468 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ ++|||||+|.+.++|+.|+..|+|..|.|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4556899999999999999999999999999999999998655 689999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 90 a~~~~~ 95 (103)
T 2cqi_A 90 ATTPSS 95 (103)
T ss_dssp CCCTTC
T ss_pred CCCCcc
Confidence 987554
No 23
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.4e-17 Score=133.64 Aligned_cols=85 Identities=21% Similarity=0.476 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 93 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAIS 93 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 45678999999999999999999999999999999999985589999999999999999999999999999999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.+...
T Consensus 94 ~~~~~ 98 (100)
T 2do4_A 94 NSGPS 98 (100)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 87553
No 24
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=1.1e-17 Score=137.70 Aligned_cols=86 Identities=29% Similarity=0.534 Sum_probs=79.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+++++++|.++|..||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3456789999999999999999999999999999999999866 899999999999999999999999999999999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
++.+...
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpz_A 101 LKRSKND 107 (115)
T ss_dssp CCCCSCC
T ss_pred EcCCCCc
Confidence 9987654
No 25
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-17 Score=132.62 Aligned_cols=86 Identities=24% Similarity=0.528 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+ ++|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 89 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4556799999999999999999999999999999999988665 889999999999999999999999999999999999
Q ss_pred ecccCcC
Q 016629 115 VATRGRK 121 (386)
Q Consensus 115 a~~~~~~ 121 (386)
+.+....
T Consensus 90 a~~~~~~ 96 (103)
T 2cq3_A 90 ATARVMT 96 (103)
T ss_dssp CCSSCCC
T ss_pred cccCCCC
Confidence 9876543
No 26
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.8e-18 Score=135.80 Aligned_cols=86 Identities=43% Similarity=0.792 Sum_probs=80.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|||..|+|++|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3456899999999999999999999999999999999998776 789999999999999999999999999999999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
++.+...
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9987654
No 27
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=135.83 Aligned_cols=86 Identities=22% Similarity=0.478 Sum_probs=80.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcC------Cceecc
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMN------GRTIDG 107 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~------g~~i~G 107 (386)
...+.++|||+|||+.+++++|..+|..||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+ |..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4566889999999999999999999999999999999999876 789999999999999999999999 999999
Q ss_pred EEEEEEeecccCc
Q 016629 108 RVVRVSEVATRGR 120 (386)
Q Consensus 108 r~L~V~~a~~~~~ 120 (386)
+.|.|.++.+...
T Consensus 91 ~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 91 RQLKVDLAVTRDE 103 (111)
T ss_dssp CEEEEECCCCCCC
T ss_pred EEEEEEECCCCcc
Confidence 9999999987654
No 28
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.74 E-value=7.8e-18 Score=139.00 Aligned_cols=80 Identities=29% Similarity=0.540 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeeccc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~ 118 (386)
.++|||+|||+.+++++|.++|++||.|..|.|+.+..+ ++|||||+|.+.++|+.||..|+|..|+|++|.|.++.+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~-~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCC-CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 568999999999999999999999999999999998644 7899999999999999999999999999999999998764
Q ss_pred C
Q 016629 119 G 119 (386)
Q Consensus 119 ~ 119 (386)
.
T Consensus 84 ~ 84 (115)
T 4f25_A 84 K 84 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 29
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.3e-17 Score=134.85 Aligned_cols=86 Identities=22% Similarity=0.492 Sum_probs=78.2
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCC--CCCceEEEEEeCChhhHHHHHHhcCCceeccEEE
Q 016629 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRS--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (386)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~--~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L 110 (386)
+.+..+.++|||+|||+.+++++|..+|..|| |..|.|+.++. +.++|||||+|.+.++|+.|| .|+|..|.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 33455678999999999999999999999999 99999999876 478999999999999999999 899999999999
Q ss_pred EEEeecccCc
Q 016629 111 RVSEVATRGR 120 (386)
Q Consensus 111 ~V~~a~~~~~ 120 (386)
.|.++.+...
T Consensus 87 ~V~~a~~~~~ 96 (104)
T 1wi8_A 87 RVDVADQAQD 96 (104)
T ss_dssp EEEECCCCCC
T ss_pred EEEEccCCCC
Confidence 9999987654
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=134.89 Aligned_cols=86 Identities=27% Similarity=0.549 Sum_probs=79.5
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ .+.++|||||+|.+.++|..|+..|+|..|.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34557899999999999999999999999999999999998 55889999999999999999999999999999999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
++.+...
T Consensus 89 ~a~~~~~ 95 (103)
T 2d9p_A 89 LAQRKEE 95 (103)
T ss_dssp ECSSCCC
T ss_pred Eeccccc
Confidence 9987654
No 31
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.8e-18 Score=136.39 Aligned_cols=87 Identities=24% Similarity=0.398 Sum_probs=80.1
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
+....+.++|||+|||+.+++++|..+|+.||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.
T Consensus 17 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 96 (106)
T 1p27_B 17 PQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPIS 96 (106)
T ss_dssp BCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 334456789999999999999999999999999999999999886 8899999999999999999999999999999999
Q ss_pred EEeecccC
Q 016629 112 VSEVATRG 119 (386)
Q Consensus 112 V~~a~~~~ 119 (386)
|.++.+..
T Consensus 97 V~~a~~~~ 104 (106)
T 1p27_B 97 VDWCFVRG 104 (106)
T ss_dssp EEESEESS
T ss_pred EEeecCCC
Confidence 99998754
No 32
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=2e-17 Score=133.50 Aligned_cols=85 Identities=24% Similarity=0.501 Sum_probs=78.1
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
.+..+.++|||+|||+.+++++|.++|..|| |..|.|+.++.+ .++|||||+|.+.++|+.|+ .|+|..|+|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3455678999999999999999999999997 999999999876 88999999999999999999 89999999999999
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987554
No 33
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.73 E-value=1.3e-17 Score=132.89 Aligned_cols=83 Identities=25% Similarity=0.542 Sum_probs=77.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 4689999999999999999999999999999999998776 889999999999999999999999999999999999998
Q ss_pred ccCc
Q 016629 117 TRGR 120 (386)
Q Consensus 117 ~~~~ 120 (386)
+...
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 7653
No 34
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=132.10 Aligned_cols=83 Identities=36% Similarity=0.565 Sum_probs=78.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..|+|++|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 4556789999999999999999999999999999999999886 889999999999999999999999999999999999
Q ss_pred eecc
Q 016629 114 EVAT 117 (386)
Q Consensus 114 ~a~~ 117 (386)
++.+
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 35
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.73 E-value=9.8e-18 Score=130.11 Aligned_cols=81 Identities=27% Similarity=0.502 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..|+|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 356889999999999999999999999999999999988666 7899999999999999999999999999999999998
Q ss_pred ec
Q 016629 115 VA 116 (386)
Q Consensus 115 a~ 116 (386)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 36
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=131.30 Aligned_cols=82 Identities=33% Similarity=0.595 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
..++.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..|.|++|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 3456789999999999999999999999999999999998876 889999999999999999999999999999999999
Q ss_pred eec
Q 016629 114 EVA 116 (386)
Q Consensus 114 ~a~ 116 (386)
+|+
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 37
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=1.2e-17 Score=136.25 Aligned_cols=86 Identities=24% Similarity=0.407 Sum_probs=79.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+.+++++|..+|+.||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4456789999999999999999999999999999999998766 889999999999999999999999999999999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
++.+...
T Consensus 102 ~a~~~~~ 108 (110)
T 1oo0_B 102 WCFVKGP 108 (110)
T ss_dssp ESEESSC
T ss_pred EcccCCC
Confidence 9987553
No 38
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.6e-17 Score=133.34 Aligned_cols=77 Identities=22% Similarity=0.329 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceecc-----EEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG-----RVVR 111 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G-----r~L~ 111 (386)
...++|||+|||+++++++|.++|.+||.|..|.|+.+ |||||+|.+.++|+.||..|||..|.| +.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~ 86 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 86 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEE
Confidence 45789999999999999999999999999999999876 799999999999999999999999999 9999
Q ss_pred EEeecccC
Q 016629 112 VSEVATRG 119 (386)
Q Consensus 112 V~~a~~~~ 119 (386)
|.++.+..
T Consensus 87 V~~a~~~~ 94 (108)
T 1x4c_A 87 VKVDGPRS 94 (108)
T ss_dssp EEESSCCS
T ss_pred EEeCCCCC
Confidence 99998743
No 39
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.73 E-value=1.4e-17 Score=132.09 Aligned_cols=83 Identities=31% Similarity=0.522 Sum_probs=77.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+.++|||||+|.+.++|..|+..|+|..|.|++|.|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 34567899999999999999999999999999999999988778899999999999999999999999999999999998
Q ss_pred ecc
Q 016629 115 VAT 117 (386)
Q Consensus 115 a~~ 117 (386)
+..
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 40
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.73 E-value=4.1e-18 Score=136.24 Aligned_cols=80 Identities=18% Similarity=0.375 Sum_probs=73.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCC--eEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCc----eeccEEE
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGS--VVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR----TIDGRVV 110 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~--I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~----~i~Gr~L 110 (386)
.-.+|||+|||+.+|+++|.++|++||. |..|.|+.++.+ .++|||||+|.+.++|+.|+..|||. .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3569999999999999999999999995 678999999887 89999999999999999999999997 5899999
Q ss_pred EEEeecc
Q 016629 111 RVSEVAT 117 (386)
Q Consensus 111 ~V~~a~~ 117 (386)
.|+||+.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999874
No 41
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=134.62 Aligned_cols=85 Identities=27% Similarity=0.425 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhc-CCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCce-eccEEEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDK-YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT-IDGRVVRVS 113 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~-~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~-i~Gr~L~V~ 113 (386)
..+.++|||+|||+++++++|..+|.. ||.|..|.|+.+..+.++|||||+|.+.++|..|+..|+|.. |+|+.|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 456789999999999999999999999 999999999999855899999999999999999999999999 999999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
++.+...
T Consensus 86 ~a~~~~~ 92 (104)
T 2dhg_A 86 VAIPKAS 92 (104)
T ss_dssp BCCCCCS
T ss_pred EccCCCc
Confidence 9976544
No 42
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.73 E-value=1.9e-17 Score=133.88 Aligned_cols=85 Identities=20% Similarity=0.313 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceecc---EEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG---RVVRV 112 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G---r~L~V 112 (386)
..+.++|||+|||+.+++++|..+|+.||.|..|.|+.++.+.++|||||+|.+.++|+.|+..|+|..+.| ++|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V 91 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVV 91 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEE
Confidence 346899999999999999999999999999999999999866889999999999999999999999999998 99999
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.++.+...
T Consensus 92 ~~a~~~~~ 99 (105)
T 2dnh_A 92 KFADTDKE 99 (105)
T ss_dssp EESCSSCC
T ss_pred EECccCcc
Confidence 99987654
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=133.78 Aligned_cols=86 Identities=24% Similarity=0.455 Sum_probs=79.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeE-EEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEE---
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV-AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV--- 109 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~-~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~--- 109 (386)
...+.++|||+|||+++++++|.++|.+||.|. .|.|+.++.+ .++|||||+|.+.++|+.|+..|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 455689999999999999999999999999999 9999999866 89999999999999999999999999999999
Q ss_pred -EEEEeecccCc
Q 016629 110 -VRVSEVATRGR 120 (386)
Q Consensus 110 -L~V~~a~~~~~ 120 (386)
|.|.++.+...
T Consensus 85 ~l~v~~a~~~~~ 96 (99)
T 2div_A 85 RFKLNYATYSGP 96 (99)
T ss_dssp ECCEEETTCCSS
T ss_pred eEEEeecCCCCC
Confidence 99999986543
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.8e-17 Score=134.40 Aligned_cols=86 Identities=22% Similarity=0.446 Sum_probs=79.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeC-CCC-CCceEEEEEeCChhhHHHHHHhc-CCceeccEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RST-RGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVR 111 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-~~~-~~kG~aFVeF~~~~~A~~Ai~~l-~g~~i~Gr~L~ 111 (386)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.+ ..+ .++|||||+|.+.++|+.|+..| +|..|.|+.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999988 445 88999999999999999999999 99999999999
Q ss_pred EEeecccCc
Q 016629 112 VSEVATRGR 120 (386)
Q Consensus 112 V~~a~~~~~ 120 (386)
|.++.+...
T Consensus 91 v~~a~~~~~ 99 (107)
T 2cph_A 91 LEWADSEVT 99 (107)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999987654
No 45
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=2.4e-17 Score=133.77 Aligned_cols=83 Identities=22% Similarity=0.434 Sum_probs=78.1
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
....+.++|||+|||+.+++++|.++|.+||.|..|.|+.+..+.++|||||+|.+.++|+.|+..|+|..|+|+.|.|.
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999999999999999855899999999999999999999999999999999999
Q ss_pred eec
Q 016629 114 EVA 116 (386)
Q Consensus 114 ~a~ 116 (386)
++.
T Consensus 104 ~a~ 106 (107)
T 3ulh_A 104 LVT 106 (107)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 46
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=133.99 Aligned_cols=84 Identities=27% Similarity=0.449 Sum_probs=77.8
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEE--------EEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCc
Q 016629 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--------VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR 103 (386)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~ 103 (386)
+....+.++|||+|||+++++++|.++|++||.|.. |.|+.++.+ .++|||||+|.+.++|+.|+..|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 334566899999999999999999999999999999 999999776 88999999999999999999999999
Q ss_pred eeccEEEEEEeec
Q 016629 104 TIDGRVVRVSEVA 116 (386)
Q Consensus 104 ~i~Gr~L~V~~a~ 116 (386)
.|+|+.|.|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999874
No 47
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.6e-17 Score=134.19 Aligned_cols=85 Identities=33% Similarity=0.595 Sum_probs=78.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+ +++|||||+|.+.++|+.||..|++ .|.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 3456789999999999999999999999999999999999876 8999999999999999999999998 8999999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
++.....
T Consensus 92 ~a~~~~~ 98 (116)
T 2cqd_A 92 LAYLGAK 98 (116)
T ss_dssp ESTTTCC
T ss_pred EcccCCC
Confidence 9976544
No 48
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=129.72 Aligned_cols=82 Identities=27% Similarity=0.531 Sum_probs=76.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-C-CceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-R-GKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~-~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
..++|||+|||+++++++|.++|++||.|..|.|+.+..+ . ++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 4689999999999999999999999999999999988765 4 8999999999999999999999999999999999999
Q ss_pred cccC
Q 016629 116 ATRG 119 (386)
Q Consensus 116 ~~~~ 119 (386)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 49
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.8e-17 Score=135.83 Aligned_cols=88 Identities=26% Similarity=0.357 Sum_probs=79.5
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHH---HHhhcCCCeEEEEEeeCCCC----CCceEEEEEeCChhhHHHHHHhcCCcee
Q 016629 33 KMTIDDESSVYVGGLPYSANEDSVR---KVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (386)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~---~~F~~~G~I~~v~i~~~~~~----~~kG~aFVeF~~~~~A~~Ai~~l~g~~i 105 (386)
.......++|||+|||+.+++++|. ++|++||.|..|.|+.+..+ .++|||||+|.+.++|+.|+..|||..|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3445568899999999999999999 99999999999999988764 4669999999999999999999999999
Q ss_pred ccEEEEEEeecccCc
Q 016629 106 DGRVVRVSEVATRGR 120 (386)
Q Consensus 106 ~Gr~L~V~~a~~~~~ 120 (386)
+|++|.|.++.+...
T Consensus 89 ~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 89 DGRTLKASLGTTKYC 103 (111)
T ss_dssp TTEEEEEESCCCCSC
T ss_pred CCEEEEEEecccccc
Confidence 999999999987653
No 50
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.2e-17 Score=135.41 Aligned_cols=86 Identities=27% Similarity=0.417 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeE--------EEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCcee
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--------AVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--------~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i 105 (386)
...+.++|||+|||+.+++++|.++|.+||.|. .|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 455689999999999999999999999999999 6999998666 8999999999999999999999999999
Q ss_pred ccEEEEEEeecccCc
Q 016629 106 DGRVVRVSEVATRGR 120 (386)
Q Consensus 106 ~Gr~L~V~~a~~~~~ 120 (386)
.|+.|.|.++.+...
T Consensus 91 ~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 QGSKLKVSLARKKPP 105 (113)
T ss_dssp TTEECEEECSSCCCC
T ss_pred CCCEEEEEECCCCCC
Confidence 999999999987654
No 51
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.9e-17 Score=133.14 Aligned_cols=84 Identities=30% Similarity=0.539 Sum_probs=76.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+.+++++|.++|.+||.|..|.|..+ ..++|||||+|.+.++|+.|+..|++..|.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 95 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 95 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4456789999999999999999999999999999999654 25789999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 96 a~~~~~ 101 (109)
T 1x4a_A 96 PRSGRG 101 (109)
T ss_dssp CCCCCC
T ss_pred cccCCC
Confidence 987554
No 52
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=9.1e-17 Score=131.79 Aligned_cols=85 Identities=28% Similarity=0.366 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.++.+.++|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 34567899999999999999999999999999999999998768899999999999999999999999999999999999
Q ss_pred ecccC
Q 016629 115 VATRG 119 (386)
Q Consensus 115 a~~~~ 119 (386)
+....
T Consensus 91 a~~~~ 95 (114)
T 2do0_A 91 DERAL 95 (114)
T ss_dssp CSCCC
T ss_pred cccCC
Confidence 87543
No 53
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.72 E-value=1.3e-17 Score=135.08 Aligned_cols=87 Identities=22% Similarity=0.467 Sum_probs=80.0
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCcee---ccEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTI---DGRV 109 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i---~Gr~ 109 (386)
....+.++|||+|||+.+++++|..+|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..+ .|++
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 34556889999999999999999999999999999999998876 8999999999999999999999999998 8999
Q ss_pred EEEEeecccCc
Q 016629 110 VRVSEVATRGR 120 (386)
Q Consensus 110 L~V~~a~~~~~ 120 (386)
|.|.++.+...
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999987554
No 54
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.72 E-value=2.6e-17 Score=135.96 Aligned_cols=83 Identities=29% Similarity=0.536 Sum_probs=76.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....+.++|||+|||+++++++|+++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|||..|+|+.|.|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556789999999999999999999999999999999998776 89999999999999999999999999999999999
Q ss_pred Eeec
Q 016629 113 SEVA 116 (386)
Q Consensus 113 ~~a~ 116 (386)
.+++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 55
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=2.5e-17 Score=144.52 Aligned_cols=88 Identities=24% Similarity=0.392 Sum_probs=79.8
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
+....+.++|||+|||+.+++++|..+|++||.|..|.|+.++.+ .++|||||+|.+.++|..||..|||..|.|++|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 344566789999999999999999999999999999999999766 8899999999999999999999999999999999
Q ss_pred EEeecccCc
Q 016629 112 VSEVATRGR 120 (386)
Q Consensus 112 V~~a~~~~~ 120 (386)
|.|+.+...
T Consensus 146 V~~a~~~~~ 154 (165)
T 1rk8_A 146 VDWCFVKGP 154 (165)
T ss_dssp EEESEECC-
T ss_pred EEEecCCCC
Confidence 999987654
No 56
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=6.2e-17 Score=126.32 Aligned_cols=81 Identities=27% Similarity=0.594 Sum_probs=74.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+. +++..|+|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999999876 899999999999999999997 5889999999999
Q ss_pred Eee
Q 016629 113 SEV 115 (386)
Q Consensus 113 ~~a 115 (386)
.+|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 57
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3e-17 Score=132.78 Aligned_cols=85 Identities=31% Similarity=0.648 Sum_probs=78.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.++.+ .++|||||+|.+.++|+.||.. ++..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 4566899999999999999999999999999999999999776 8999999999999999999998 9999999999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
++.+...
T Consensus 91 ~a~~~~~ 97 (105)
T 2dh8_A 91 PCTPRGM 97 (105)
T ss_dssp CSCCSSC
T ss_pred EccCCCC
Confidence 9986654
No 58
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=136.18 Aligned_cols=86 Identities=31% Similarity=0.647 Sum_probs=79.4
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
+....+.++|||+|||+.+++++|..+|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..|+|+.|.
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 334566889999999999999999999999999999999998776 7899999999999999999999999999999999
Q ss_pred EEeeccc
Q 016629 112 VSEVATR 118 (386)
Q Consensus 112 V~~a~~~ 118 (386)
|.++.++
T Consensus 100 V~~a~~k 106 (108)
T 2jrs_A 100 VGHVTER 106 (108)
T ss_dssp EECSCSS
T ss_pred EEEcccC
Confidence 9998764
No 59
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=2.9e-17 Score=129.43 Aligned_cols=85 Identities=24% Similarity=0.381 Sum_probs=77.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+.+++++|.++|.+||.|..|.|+.+ .+.++|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 3456899999999999999999999999999999999884 447899999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 83 a~~~~~ 88 (92)
T 2dgv_A 83 DRNASG 88 (92)
T ss_dssp CSCCSS
T ss_pred cCCCCC
Confidence 987654
No 60
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.4e-17 Score=134.77 Aligned_cols=86 Identities=24% Similarity=0.531 Sum_probs=78.3
Q ss_pred cCCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 32 VKMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 32 ~~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
......+.++|||+|||+.+++++|..+|++||.|..|.|+.+..+ ++|||||+|.+.++|+.|+..|+|..|+|+.|.
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~-~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTB-CTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC-CceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3444567899999999999999999999999999999999988544 889999999999999999999999999999999
Q ss_pred EEeeccc
Q 016629 112 VSEVATR 118 (386)
Q Consensus 112 V~~a~~~ 118 (386)
|.++.+.
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9998764
No 61
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.71 E-value=5e-18 Score=133.80 Aligned_cols=81 Identities=16% Similarity=0.395 Sum_probs=70.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
.+|||+|||+++++++|.++|++|| .|..|.|+.++.+ .++|||||+|.+.++|+.|+..|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 9999999999866 899999999999999999999999999999999999998
Q ss_pred ccCc
Q 016629 117 TRGR 120 (386)
Q Consensus 117 ~~~~ 120 (386)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 7544
No 62
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=5.4e-17 Score=126.98 Aligned_cols=79 Identities=25% Similarity=0.485 Sum_probs=74.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+ .|+|..|.|+.|.|.++.+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 479999999999999999999999999999999999766 88999999999999999999 8999999999999999876
Q ss_pred c
Q 016629 118 R 118 (386)
Q Consensus 118 ~ 118 (386)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 63
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.71 E-value=5.8e-18 Score=136.30 Aligned_cols=83 Identities=22% Similarity=0.354 Sum_probs=77.6
Q ss_pred CCCCeEEEcCCCC------CCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceecc-E
Q 016629 37 DDESSVYVGGLPY------SANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG-R 108 (386)
Q Consensus 37 ~~~~~lfVgnLp~------~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G-r 108 (386)
...++|||+|||+ .+++++|..+|++||.|..|.|+.++.+ +++|||||+|.+.++|+.|+..|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3467999999999 9999999999999999999999999886 899999999999999999999999999999 9
Q ss_pred EEEEEeecccC
Q 016629 109 VVRVSEVATRG 119 (386)
Q Consensus 109 ~L~V~~a~~~~ 119 (386)
.|.|.++.+..
T Consensus 84 ~l~V~~a~~~~ 94 (100)
T 3ns6_A 84 RLFLYTMKDVE 94 (100)
T ss_dssp BCEEEESHHHH
T ss_pred EEEEEECchhh
Confidence 99999997643
No 64
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.9e-17 Score=133.46 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcC--CceeccEEEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVRVS 113 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~--g~~i~Gr~L~V~ 113 (386)
..+.++|||+|||+.+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|+ +..|.|++|.|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 87 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQ 87 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 456889999999999999999999999999999999874 6899999999999999999886 478999999999
Q ss_pred eecccCcC
Q 016629 114 EVATRGRK 121 (386)
Q Consensus 114 ~a~~~~~~ 121 (386)
++.+....
T Consensus 88 ~A~~~~~~ 95 (105)
T 1sjq_A 88 FSNHKELK 95 (105)
T ss_dssp CCSSSSCC
T ss_pred EcCCCCCC
Confidence 99876543
No 65
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=142.09 Aligned_cols=81 Identities=22% Similarity=0.440 Sum_probs=75.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..++|||+|||+++++++|.++|+.|| .|..|.|+.++.+ .++|||||+|.+.++|+.||..|+|..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 9999999999876 8999999999999999999999999999999999999
Q ss_pred eccc
Q 016629 115 VATR 118 (386)
Q Consensus 115 a~~~ 118 (386)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9754
No 66
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=4.1e-17 Score=127.55 Aligned_cols=76 Identities=11% Similarity=0.102 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
.+....|||+||++.+|+++|.++|.+||+|..++++. ++|||||+|.+.++|..|+..|||..+.|++|.|++|
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 34578999999999999999999999999999999976 6899999999999999999999999999999999998
Q ss_pred c
Q 016629 116 A 116 (386)
Q Consensus 116 ~ 116 (386)
.
T Consensus 79 ~ 79 (89)
T 2wbr_A 79 S 79 (89)
T ss_dssp C
T ss_pred C
Confidence 5
No 67
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.9e-17 Score=134.27 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
.+..+|||+|||+++|+++|.++|++||.|..|.|+.++.+.++|||||+|.+.++|..|+. ++|..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 34689999999999999999999999999999999998877899999999999999999999 89999999999999875
Q ss_pred c
Q 016629 117 T 117 (386)
Q Consensus 117 ~ 117 (386)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 68
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.5e-16 Score=128.22 Aligned_cols=85 Identities=26% Similarity=0.500 Sum_probs=77.5
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....+.++|||+|||+.+++++|..+|..||.|..|.|+.++.+ .++|||||+|.+.++|+.|+. ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 34566889999999999999999999999999999999999776 899999999999999999999 478999999999
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.++.+...
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99987654
No 69
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=133.09 Aligned_cols=88 Identities=23% Similarity=0.404 Sum_probs=77.3
Q ss_pred hcCCCCCCCCeEEEcCCCCCC------cHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCce
Q 016629 31 RVKMTIDDESSVYVGGLPYSA------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT 104 (386)
Q Consensus 31 ~~~~~~~~~~~lfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~ 104 (386)
.++......++|||+|||+.+ ++++|..+|++||.|..|.|+ ...+.++|||||+|.+.++|..|+..|||..
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 7 RPQEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp CCCSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CCCCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 344455567899999999999 789999999999999999988 3344789999999999999999999999999
Q ss_pred eccE-EEEEEeecccC
Q 016629 105 IDGR-VVRVSEVATRG 119 (386)
Q Consensus 105 i~Gr-~L~V~~a~~~~ 119 (386)
|+|+ +|.|.++....
T Consensus 86 ~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 86 LDKQHTFRVNLFTDFD 101 (105)
T ss_dssp CSTTCEEEEECSCCCC
T ss_pred cCCCceEEEEEcchHh
Confidence 9998 99999987543
No 70
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.70 E-value=2.9e-17 Score=138.58 Aligned_cols=86 Identities=35% Similarity=0.531 Sum_probs=80.0
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.||..|+|..|+|++|.|
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V 120 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 120 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34567889999999999999999999999999999999998877 89999999999999999999999999999999999
Q ss_pred EeecccC
Q 016629 113 SEVATRG 119 (386)
Q Consensus 113 ~~a~~~~ 119 (386)
.++.+..
T Consensus 121 ~~a~~~~ 127 (129)
T 2kxn_B 121 DFSITKR 127 (129)
T ss_dssp SCCSSSS
T ss_pred EEecCCC
Confidence 9987654
No 71
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.70 E-value=1.7e-16 Score=128.11 Aligned_cols=79 Identities=25% Similarity=0.525 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
..+.++|||+|||+.+++++|.++|.+||.|..|.|+ ++||||+|.+.++|+.|+..|+|..|.|+.|.|.++
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 80 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFA 80 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEc
Confidence 4567899999999999999999999999999999986 359999999999999999999999999999999999
Q ss_pred cccCcC
Q 016629 116 ATRGRK 121 (386)
Q Consensus 116 ~~~~~~ 121 (386)
.+....
T Consensus 81 ~~~~~~ 86 (103)
T 2dgu_A 81 KPPDQK 86 (103)
T ss_dssp CCCCCC
T ss_pred CCCccc
Confidence 876543
No 72
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.70 E-value=1.6e-16 Score=132.49 Aligned_cols=86 Identities=21% Similarity=0.405 Sum_probs=79.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+.+++++|.++|+.||.|..|.|+.+..+.++|||||+|.+.++|..|+..|+|..|+|+.|.|.+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 110 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45667899999999999999999999999999999999998558999999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
|.+...
T Consensus 111 a~~~~~ 116 (124)
T 2kt5_A 111 VASQID 116 (124)
T ss_dssp ECCTTC
T ss_pred eCCCCC
Confidence 987544
No 73
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=6.5e-17 Score=130.18 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCce--eccEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT--IDGRVVRV 112 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~--i~Gr~L~V 112 (386)
..++..+|||+|||+.+|+++|..+|++||.|..|.|+. .+|||||+|.+.++|..|+..|+|.. |.|++|.|
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 356788999999999999999999999999999999975 46899999999999999999999875 78999999
Q ss_pred Eeeccc
Q 016629 113 SEVATR 118 (386)
Q Consensus 113 ~~a~~~ 118 (386)
.|++++
T Consensus 92 ~~S~~k 97 (100)
T 3r27_A 92 NYSTSQ 97 (100)
T ss_dssp EECSCS
T ss_pred Eecccc
Confidence 999764
No 74
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4e-17 Score=134.13 Aligned_cols=82 Identities=24% Similarity=0.375 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
..++|||+|||+++++++|.++|..||.|..|.|+.++.+ .++|||||+|.+.++|+.|| .|+|..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999886 89999999999999999999 899999999999999997
Q ss_pred ccCc
Q 016629 117 TRGR 120 (386)
Q Consensus 117 ~~~~ 120 (386)
+...
T Consensus 103 ~~~~ 106 (114)
T 2cq4_A 103 AEKN 106 (114)
T ss_dssp HHHH
T ss_pred CCcc
Confidence 6543
No 75
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.2e-17 Score=132.67 Aligned_cols=82 Identities=27% Similarity=0.593 Sum_probs=76.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
+.++|||+|||+++++++|..+|..||.|..|.|+.++.+ .++|||||+|.+.++|+.||.. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 3589999999999999999999999999999999999776 8999999999999999999997 9999999999999998
Q ss_pred ccCc
Q 016629 117 TRGR 120 (386)
Q Consensus 117 ~~~~ 120 (386)
+...
T Consensus 105 ~~~~ 108 (116)
T 1x4b_A 105 AREE 108 (116)
T ss_dssp SCCC
T ss_pred CCcc
Confidence 7654
No 76
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=125.07 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=76.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
....++|||+|||+++++++|.++|..| .|..|.|+.+..+.++|||||+|.+.++|+.|+. |+|..|+|+.|.|.++
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a 84 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFRE 84 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEEC
Confidence 4567899999999999999999999999 9999999999555899999999999999999999 9999999999999999
Q ss_pred cccC
Q 016629 116 ATRG 119 (386)
Q Consensus 116 ~~~~ 119 (386)
.+..
T Consensus 85 ~~~~ 88 (91)
T 2dgw_A 85 KSGP 88 (91)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8654
No 77
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=128.27 Aligned_cols=82 Identities=29% Similarity=0.571 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
..+.++|||+|||+.+++++|.++|.+||.| .|+.+..+.++|||||+|.+.++|+.|+..|+|..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 88 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQ 88 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEc
Confidence 4568999999999999999999999999987 5666645588999999999999999999999999999999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.+...
T Consensus 89 ~~~~~ 93 (101)
T 2fc9_A 89 GPRGS 93 (101)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 87644
No 78
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-17 Score=130.44 Aligned_cols=83 Identities=18% Similarity=0.251 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
.+..++|||+|||+.+++++|+++|..||.|..+.++.++.+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 345689999999999999999999999999988877777666 8899999999999999999999999999999999999
Q ss_pred eccc
Q 016629 115 VATR 118 (386)
Q Consensus 115 a~~~ 118 (386)
+...
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 79
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1e-16 Score=126.12 Aligned_cols=78 Identities=28% Similarity=0.598 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
..+.++|||+|||+++++++|.++|++||.|..|.|+ +|||||+|.+.++|+.|+..|+|..|.|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 77 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEAS 77 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEEC
Confidence 4567899999999999999999999999999999997 479999999999999999999999999999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.+...
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 87654
No 80
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=5.2e-17 Score=130.42 Aligned_cols=77 Identities=19% Similarity=0.322 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
....++|||+|||+++++++|..+|++||.|..|.|.. .+|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 44578999999999999999999999999999999973 5789999999999999999999999999999999998
Q ss_pred cc
Q 016629 116 AT 117 (386)
Q Consensus 116 ~~ 117 (386)
.+
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 75
No 81
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.69 E-value=1.1e-16 Score=130.86 Aligned_cols=84 Identities=20% Similarity=0.458 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+.+++++|..+|+.||.|..|.|+.++.+ .++|||||+|.+.++|..|+..+ +..|+|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 455789999999999999999999999999999999999876 89999999999999999999976 5999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 101 a~~~~~ 106 (109)
T 2rs2_A 101 AFPRRA 106 (109)
T ss_dssp CCCCCC
T ss_pred ccCCCC
Confidence 986543
No 82
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=128.21 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=73.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhc--CCceeccEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM--NGRTIDGRVVRV 112 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l--~g~~i~Gr~L~V 112 (386)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.+ +|||||+|.+.++|..|+..| ++..|.|++|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 85 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYI 85 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEE
Confidence 3456789999999999999999999999999999988764 789999999999999999977 577899999999
Q ss_pred EeecccCcC
Q 016629 113 SEVATRGRK 121 (386)
Q Consensus 113 ~~a~~~~~~ 121 (386)
.|+.+....
T Consensus 86 ~~a~~~~~~ 94 (101)
T 2cq1_A 86 QYSNHKELK 94 (101)
T ss_dssp EECSCSSCC
T ss_pred EEcCcccCc
Confidence 999875543
No 83
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5.8e-17 Score=131.19 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCc--eeccEEEEE
Q 016629 36 IDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR--TIDGRVVRV 112 (386)
Q Consensus 36 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~--~i~Gr~L~V 112 (386)
..+..+|||+|||+ .+|+++|..+|++||.|..|.|+.+ +|||||+|.+.++|..|+..|++. .|.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V 86 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRV 86 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEE
Confidence 45688999999999 9999999999999999999999864 479999999999999999998864 599999999
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.++.....
T Consensus 87 ~~a~~~~~ 94 (102)
T 1x4d_A 87 HLSQKYKR 94 (102)
T ss_dssp EEECCCTT
T ss_pred EECCCCCC
Confidence 99986443
No 84
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.6e-17 Score=129.16 Aligned_cols=81 Identities=26% Similarity=0.532 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+.+++++|..+|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 356889999999999999999999999999999999998776 8899999999999999999999999999999988765
Q ss_pred ec
Q 016629 115 VA 116 (386)
Q Consensus 115 a~ 116 (386)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 85
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=2e-16 Score=124.86 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=73.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+.+++++|.++|++||.|..|.|+. +||||+|.+.++|..|+..|||..|.|+.|.|.+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 455688999999999999999999999999999999964 4999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 79 a~~~~~ 84 (92)
T 2dgt_A 79 STSRLR 84 (92)
T ss_dssp SSCCCS
T ss_pred ccCCCC
Confidence 987654
No 86
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=1.2e-17 Score=154.50 Aligned_cols=81 Identities=17% Similarity=0.433 Sum_probs=75.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCC--CeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYG--SVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G--~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..++|||+|||+++|+++|+++|.+|| .|..|.|+.++.+ +++|||||+|.+.++|+.||..|||..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 9999999999877 8999999999999999999999999999999999999
Q ss_pred eccc
Q 016629 115 VATR 118 (386)
Q Consensus 115 a~~~ 118 (386)
+.+.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8654
No 87
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.68 E-value=3.3e-17 Score=129.88 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
++.++|||+|||+.+++++|.++|.+||.|..+.++.++.+ .++|||||+|.+.++|+.|+..|||..|+|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 34689999999999999999999999999998888887666 88999999999999999999999999999999999987
Q ss_pred cc
Q 016629 116 AT 117 (386)
Q Consensus 116 ~~ 117 (386)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 88
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.68 E-value=3.6e-17 Score=135.08 Aligned_cols=75 Identities=21% Similarity=0.317 Sum_probs=65.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEE-----EE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV-----VR 111 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~-----L~ 111 (386)
...++|||+|||+++++++|.++|.+||.|..|.|+.+ |||||+|.+.++|+.||..|||..|+|+. |.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~ 87 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIR 87 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEE
Confidence 34689999999999999999999999999999999765 79999999999999999999999999998 55
Q ss_pred EEeecc
Q 016629 112 VSEVAT 117 (386)
Q Consensus 112 V~~a~~ 117 (386)
|..+.+
T Consensus 88 v~~~~~ 93 (115)
T 3beg_B 88 VKVDGP 93 (115)
T ss_dssp EEECC-
T ss_pred eccCCC
Confidence 555443
No 89
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.68 E-value=2.3e-17 Score=132.63 Aligned_cols=82 Identities=23% Similarity=0.500 Sum_probs=72.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCC--CCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDR--STRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~--~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
.....++|||+|||+++++++|..+|+.|| |..|.|+.+. .++++|||||+|.+.++|..|+ .|+|..|+|+.|.|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 355689999999999999999999999999 9999999987 3489999999999999999999 89999999999999
Q ss_pred Eeeccc
Q 016629 113 SEVATR 118 (386)
Q Consensus 113 ~~a~~~ 118 (386)
.++.+.
T Consensus 93 ~~a~~~ 98 (100)
T 2j76_E 93 DVADQA 98 (100)
T ss_dssp EECCCS
T ss_pred EeccCC
Confidence 998764
No 90
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=9.6e-17 Score=129.79 Aligned_cols=82 Identities=24% Similarity=0.300 Sum_probs=74.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
....++|||+|||+.+|+++|.++|..||. +.|.|+.++.++++|||||+|.+.++|+.||. +++..|+|+.|.|.++
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~ 89 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLN 89 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 455789999999999999999999999995 49999999855999999999999999999995 7999999999999988
Q ss_pred cccC
Q 016629 116 ATRG 119 (386)
Q Consensus 116 ~~~~ 119 (386)
.+..
T Consensus 90 ~~~~ 93 (102)
T 1wez_A 90 STAG 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7654
No 91
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.68 E-value=1.9e-16 Score=126.72 Aligned_cols=77 Identities=23% Similarity=0.538 Sum_probs=71.3
Q ss_pred CCCCCCeEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
..++.++|||+|||+ ++++++|..+|+.||.|..|.|. +|||||+|.+.++|..|+..|+|..++|+.|.|.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 90 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILE 90 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 455689999999999 99999999999999999999983 6899999999999999999999999999999999
Q ss_pred eeccc
Q 016629 114 EVATR 118 (386)
Q Consensus 114 ~a~~~ 118 (386)
++.+.
T Consensus 91 ~a~~~ 95 (97)
T 2xnq_A 91 VSSSN 95 (97)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 98764
No 92
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.68 E-value=1.6e-16 Score=137.93 Aligned_cols=85 Identities=36% Similarity=0.617 Sum_probs=79.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
....++|||+|||+.+++++|..+|+.||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|||..|+|++|.|.+
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 146 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQM 146 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 355789999999999999999999999999999999998766 8999999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 147 a~~~~~ 152 (158)
T 2kn4_A 147 ARYGRP 152 (158)
T ss_dssp ECCSSC
T ss_pred CCCCCC
Confidence 987544
No 93
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.1e-16 Score=132.95 Aligned_cols=84 Identities=14% Similarity=0.206 Sum_probs=75.0
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCC--ceeccEEE
Q 016629 33 KMTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG--RTIDGRVV 110 (386)
Q Consensus 33 ~~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g--~~i~Gr~L 110 (386)
....++..+|||+|||+.+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|++ ..|.|++|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 334567889999999999999999999999999999999874 68999999999999999998874 68999999
Q ss_pred EEEeecccCcC
Q 016629 111 RVSEVATRGRK 121 (386)
Q Consensus 111 ~V~~a~~~~~~ 121 (386)
.|.++.+....
T Consensus 100 ~V~~a~~k~~~ 110 (119)
T 2ad9_A 100 YIQFSNHKELK 110 (119)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCCCCC
Confidence 99999876554
No 94
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.8e-16 Score=124.96 Aligned_cols=79 Identities=32% Similarity=0.560 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcC--CCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKY--GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~--G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
...+.++|||+|||+.+++++|..+|.+| |.|..|.++ +|||||+|.+.++|..|+..|+|..|.|+.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 83 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEV 83 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 34567899999999999999999999999 999999874 569999999999999999999999999999999
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.++.+...
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpd_A 84 TLAKPVDK 91 (99)
T ss_dssp ECCCCCCC
T ss_pred EECCCCCC
Confidence 99986543
No 95
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=7.6e-17 Score=132.55 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
....++|||+|||+++++++|+++|++|| .|..|.|... .++|||||+|.+.++|+.||..|||..|+|+.|.|.+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34578999999999999999999999999 8999988532 4789999999999999999999999999999999999
Q ss_pred eccc
Q 016629 115 VATR 118 (386)
Q Consensus 115 a~~~ 118 (386)
+...
T Consensus 102 a~~~ 105 (111)
T 2jvr_A 102 DDNP 105 (111)
T ss_dssp SCC-
T ss_pred CCCC
Confidence 8754
No 96
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=128.81 Aligned_cols=80 Identities=29% Similarity=0.549 Sum_probs=74.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
....++|||+|||+.+++++|..+|.+||.|..|.|+.+ +|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 96 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWG 96 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEec
Confidence 445789999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.+...
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 87654
No 97
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=1.9e-16 Score=131.86 Aligned_cols=80 Identities=26% Similarity=0.485 Sum_probs=75.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
.++|||+|||+++++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+ .|+|..|+|+.|.|.++.+
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 114 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRT 114 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCC
Confidence 579999999999999999999999999999999998766 89999999999999999999 7999999999999999875
Q ss_pred cC
Q 016629 118 RG 119 (386)
Q Consensus 118 ~~ 119 (386)
..
T Consensus 115 ~~ 116 (124)
T 2jwn_A 115 NM 116 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 98
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.67 E-value=1.3e-16 Score=130.34 Aligned_cols=79 Identities=22% Similarity=0.460 Sum_probs=72.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+++++++|..+|++||.|..|.|+ +|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 99 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999999997 57999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 987544
No 99
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=131.42 Aligned_cols=83 Identities=18% Similarity=0.235 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCe-EEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV-VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I-~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+.+|+++|.++|..||.| ..|.|+.++.+.++|||||+|.+.++|+.||.. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~ 90 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHV 90 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEE
Confidence 4457899999999999999999999999999 889999998558999999999999999999996 99999999999999
Q ss_pred ecccC
Q 016629 115 VATRG 119 (386)
Q Consensus 115 a~~~~ 119 (386)
+.+..
T Consensus 91 a~~~~ 95 (114)
T 2cpy_A 91 VTLED 95 (114)
T ss_dssp ECHHH
T ss_pred CCHHH
Confidence 97654
No 100
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=134.85 Aligned_cols=84 Identities=11% Similarity=0.215 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L 110 (386)
...+.++|||+|||+.+++++|+ .+|++||.|..|.+.. .+.++|||||+|.+.++|..|+..|||..|.|++|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 35568899999999999999875 6999999999988753 34789999999999999999999999999999999
Q ss_pred EEEeecccCc
Q 016629 111 RVSEVATRGR 120 (386)
Q Consensus 111 ~V~~a~~~~~ 120 (386)
.|.|+.....
T Consensus 103 ~V~~a~~~~~ 112 (127)
T 2a3j_A 103 VITFSETPQS 112 (127)
T ss_dssp EEEECCCCCH
T ss_pred EEEEccCcch
Confidence 9999986543
No 101
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=126.57 Aligned_cols=83 Identities=29% Similarity=0.489 Sum_probs=74.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+.+++++|.++|..|+ .|.++.++.+ .++|||||+|.+.++|+.||..|+|..|.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 455689999999999999999999999874 5677777655 789999999999999999999999999999999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
++.+...
T Consensus 88 ~a~~~~~ 94 (102)
T 2fc8_A 88 WAKPKGE 94 (102)
T ss_dssp ECCCCCS
T ss_pred EecCCCC
Confidence 9987654
No 102
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=8.8e-17 Score=129.09 Aligned_cols=77 Identities=34% Similarity=0.563 Sum_probs=72.6
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecccC
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~~ 119 (386)
++|||+|||+++++++|.++|++||.|..|.|+.+ ++|||||+|.+.++|+.|+..|+|..|+|+.|.|.++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999887 68899999999999999999999999999999999998765
Q ss_pred c
Q 016629 120 R 120 (386)
Q Consensus 120 ~ 120 (386)
.
T Consensus 77 ~ 77 (101)
T 2hvz_A 77 R 77 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 103
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.6e-17 Score=130.31 Aligned_cols=83 Identities=36% Similarity=0.747 Sum_probs=77.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
+.++|||+|||+.+++++|..+|+.||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 86 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAA 86 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETT
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCC
Confidence 3579999999999999999999999999999999998766 789999999999999999999999999999999999997
Q ss_pred ccCc
Q 016629 117 TRGR 120 (386)
Q Consensus 117 ~~~~ 120 (386)
+...
T Consensus 87 ~~~~ 90 (104)
T 1p1t_A 87 SEKN 90 (104)
T ss_dssp CTTH
T ss_pred Cccc
Confidence 6543
No 104
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=123.65 Aligned_cols=78 Identities=22% Similarity=0.487 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
..+.++|||+|||+.+++++|..+|++||.|..|.|+. +||||+|.+.++|+.|+..|+|..|+|+.|.|.++
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 78 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELS 78 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 45678999999999999999999999999999999974 49999999999999999999999999999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.+...
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87543
No 105
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=128.97 Aligned_cols=84 Identities=15% Similarity=0.297 Sum_probs=76.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCC-eEEEEEe-eCCCC-CCceEEEEEeCChhhHHHHHHhcC--CceeccEEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGS-VVAVKIV-NDRST-RGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVR 111 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~-~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~--g~~i~Gr~L~ 111 (386)
.+.++|||+|||+.+++++|..+|..||. |..|.|+ .+..+ .++|||||+|.+.++|..|+..|+ +..|.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 66666 789999999999999999999996 5899999999
Q ss_pred EEeecccCc
Q 016629 112 VSEVATRGR 120 (386)
Q Consensus 112 V~~a~~~~~ 120 (386)
|.++.+...
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999987654
No 106
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.67 E-value=4.4e-17 Score=123.55 Aligned_cols=74 Identities=24% Similarity=0.535 Sum_probs=70.2
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
+|||+|||+++++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+. |+|..|+|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999998865 899999999999999999998 9999999999999875
No 107
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=126.36 Aligned_cols=80 Identities=20% Similarity=0.421 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec--cEEEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID--GRVVRVS 113 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~--Gr~L~V~ 113 (386)
.++.++|||+|||+.+++++|.++|++||.|..|.|..+ +|||||+|.+.++|+.|+..|||..|. |+.|.|.
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 456789999999999999999999999999999998764 689999999999999999999999999 9999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
++.+...
T Consensus 89 ~a~~~~~ 95 (97)
T 1why_A 89 FAKSGPS 95 (97)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987543
No 108
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=129.62 Aligned_cols=83 Identities=20% Similarity=0.427 Sum_probs=76.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCcee--------cc
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI--------DG 107 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i--------~G 107 (386)
..+.++|||+|||+.+++++|..+|..||.|..|.|+.++.+.++|||||+|.+.++|+.|+..|||..| .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 4467899999999999999999999999999999999998558999999999999999999999999999 57
Q ss_pred EEEEEEeeccc
Q 016629 108 RVVRVSEVATR 118 (386)
Q Consensus 108 r~L~V~~a~~~ 118 (386)
++|.|.|+.+.
T Consensus 102 ~~l~v~~a~p~ 112 (114)
T 1x5o_A 102 EPLLCKFSGPS 112 (114)
T ss_dssp SCBEEEECCCS
T ss_pred CceeEEccCCC
Confidence 88999998854
No 109
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.67 E-value=1.4e-16 Score=132.22 Aligned_cols=82 Identities=18% Similarity=0.265 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCC---eEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....++|||+|||+++|+++|.++|..||. |..|.|+.++.++++|||||+|.+.++|+.||. |+|..|+|+.|.|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 345789999999999999999999999999 899999999888899999999999999999999 9999999999999
Q ss_pred Eeeccc
Q 016629 113 SEVATR 118 (386)
Q Consensus 113 ~~a~~~ 118 (386)
.++...
T Consensus 93 ~~a~~~ 98 (118)
T 2db1_A 93 FKSHRT 98 (118)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 998654
No 110
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=2.8e-16 Score=133.23 Aligned_cols=81 Identities=27% Similarity=0.509 Sum_probs=75.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|+|+.|.|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3456889999999999999999999999999999999998776 899999999999999999999999999999999998
Q ss_pred ee
Q 016629 114 EV 115 (386)
Q Consensus 114 ~a 115 (386)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 111
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.66 E-value=4.9e-17 Score=137.22 Aligned_cols=84 Identities=17% Similarity=0.345 Sum_probs=77.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEE--EEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCc----eecc
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGR----TIDG 107 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~----~i~G 107 (386)
...+.++|||+|||+++|+++|.++|.+||.|.. |.|+.++.+ .++|||||+|.+. +|..|+..|+|. .|+|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999977 999999866 8999999999999 999999999999 9999
Q ss_pred EEEEEEeecccC
Q 016629 108 RVVRVSEVATRG 119 (386)
Q Consensus 108 r~L~V~~a~~~~ 119 (386)
+.|.|.++.+..
T Consensus 98 r~l~V~~a~~~~ 109 (131)
T 2m2b_A 98 KTINVEFAKGSK 109 (131)
T ss_dssp CCCCCEECCCSC
T ss_pred EEEEEEECCCCC
Confidence 999999997654
No 112
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=2.4e-16 Score=126.17 Aligned_cols=81 Identities=30% Similarity=0.501 Sum_probs=74.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+.+++++|..+|.+||.|..|.|+.+ +|||||+|.+.++|..|+..|+|..|.|++|.|.+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 4556789999999999999999999999999999999853 68999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 86 a~~~~~ 91 (99)
T 2cpj_A 86 ACHSAS 91 (99)
T ss_dssp SSCCSC
T ss_pred cCCCCC
Confidence 987554
No 113
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.66 E-value=5.7e-17 Score=137.81 Aligned_cols=87 Identities=36% Similarity=0.594 Sum_probs=79.9
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 34 MTIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....+.++|||+|||+.+++++|.++|+.||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|.|++|.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34455789999999999999999999999999999999998766 89999999999999999999999999999999999
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.++.+...
T Consensus 122 ~~a~~~~~ 129 (135)
T 2lea_A 122 QMARYGRP 129 (135)
T ss_dssp EECCCCCC
T ss_pred EECCCCCC
Confidence 99987554
No 114
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=121.38 Aligned_cols=76 Identities=24% Similarity=0.405 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhc-CCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l-~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+.+++++|..+|++||.|..|.|+. .+|||||+|.+.++|..|+..| +|..++|++|.|.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ 83 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKW 83 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEe
Confidence 45678999999999999999999999999999999987 3689999999999999999999 99999999999998
Q ss_pred ec
Q 016629 115 VA 116 (386)
Q Consensus 115 a~ 116 (386)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 115
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=7.3e-17 Score=122.75 Aligned_cols=75 Identities=21% Similarity=0.534 Sum_probs=71.4
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
++|||+|||+++++++|..+|++||.|..|.|+.++.+ .++|||||+|.+.++|+.|+..++ ..++|++|.|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 47999999999999999999999999999999998876 899999999999999999999999 9999999999886
No 116
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.66 E-value=9.4e-17 Score=127.76 Aligned_cols=83 Identities=19% Similarity=0.415 Sum_probs=74.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L 110 (386)
...+.++|||+|||+.+++++|. .+|++||.|..|.|+. .+.++|||||+|.+.++|..|+..|+|..|+|+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 45678999999999999999999 9999999999998863 23577999999999999999999999999999999
Q ss_pred EEEeecccC
Q 016629 111 RVSEVATRG 119 (386)
Q Consensus 111 ~V~~a~~~~ 119 (386)
.|.++.+..
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999998754
No 117
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=126.97 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEE-EEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
....++|||+|||+.+++++|.++|..||.|.. |.|+.+..++++|||||+|.+.++|+.||.. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 456789999999999999999999999999987 8888885558999999999999999999997 99999999999998
Q ss_pred ecccC
Q 016629 115 VATRG 119 (386)
Q Consensus 115 a~~~~ 119 (386)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 86543
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=125.17 Aligned_cols=79 Identities=19% Similarity=0.421 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCC-eEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCC-ceeccEEEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGS-VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNG-RTIDGRVVRVS 113 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~-I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g-~~i~Gr~L~V~ 113 (386)
..+.++|||+|||+++++++|.++|++||. |..+.+. ++|||||+|.+.++|+.|+..||| ..|+|+.|.|.
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 456789999999999999999999999999 5555553 468999999999999999999999 99999999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
++.+...
T Consensus 79 ~a~~~~~ 85 (93)
T 2cqh_A 79 YSVSKKL 85 (93)
T ss_dssp ECCCCCC
T ss_pred EccCccc
Confidence 9986543
No 119
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-16 Score=127.23 Aligned_cols=81 Identities=21% Similarity=0.228 Sum_probs=72.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCc--eeccEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR--TIDGRVVRV 112 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~--~i~Gr~L~V 112 (386)
...+..+|||+|||+.+++++|.++|++||.|..|.|+.+ +|||||+|.+.++|..|+..|++. .|.|++|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 3456789999999999999999999999999999998763 689999999999999999988764 599999999
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.|+.....
T Consensus 86 ~~a~~~~~ 93 (104)
T 1wex_A 86 NYSTSKRI 93 (104)
T ss_dssp EECSSSSC
T ss_pred EEccCccc
Confidence 99986544
No 120
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-16 Score=129.71 Aligned_cols=82 Identities=17% Similarity=0.339 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCe----EEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV----VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I----~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
..+.++|||+|||+.+++++|.++|..||.| ..+.+. .+.++|||||+|.+.++|+.|+..|+|..|+|+.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4567899999999999999999999999998 455554 347899999999999999999999999999999999
Q ss_pred EEeecccCc
Q 016629 112 VSEVATRGR 120 (386)
Q Consensus 112 V~~a~~~~~ 120 (386)
|.++.+...
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999987654
No 121
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.65 E-value=3e-16 Score=128.98 Aligned_cols=83 Identities=18% Similarity=0.399 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
..+.++|||+|||+.+++++|..+|+.||.|..|.|+.+. .++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~--~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP--ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST--TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC--CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 4567899999999999999999999999999999998653 45899999999999999999999999999999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.+...
T Consensus 83 ~~~~~ 87 (115)
T 3lqv_A 83 NANRA 87 (115)
T ss_dssp CHHHH
T ss_pred cCChh
Confidence 86543
No 122
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.4e-16 Score=126.89 Aligned_cols=78 Identities=26% Similarity=0.572 Sum_probs=71.4
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
.++.++|||+|||+ .+++++|..+|++||.|..|.|. +|||||+|.+.++|..|+..|+|..+.|++|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 79 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEV 79 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45688999999999 99999999999999999999984 57999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 80 a~~~~~ 85 (96)
T 2kvi_A 80 SSSNAR 85 (96)
T ss_dssp EECCCC
T ss_pred cCcCCC
Confidence 987554
No 123
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.65 E-value=9.3e-17 Score=123.85 Aligned_cols=73 Identities=26% Similarity=0.526 Sum_probs=66.6
Q ss_pred CCeEEEcCCCCCC------cHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccE-EEE
Q 016629 39 ESSVYVGGLPYSA------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR-VVR 111 (386)
Q Consensus 39 ~~~lfVgnLp~~~------te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr-~L~ 111 (386)
.++|||+|||+.+ ++++|..+|++||.|..|.|+ ...+.++|||||+|.+.++|+.|+..|||..|+|+ +|.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~ 79 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFR 79 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEE
Confidence 3689999999999 789999999999999999987 33447899999999999999999999999999999 887
Q ss_pred E
Q 016629 112 V 112 (386)
Q Consensus 112 V 112 (386)
|
T Consensus 80 V 80 (81)
T 2krb_A 80 V 80 (81)
T ss_dssp C
T ss_pred e
Confidence 6
No 124
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.65 E-value=1.6e-16 Score=135.31 Aligned_cols=82 Identities=18% Similarity=0.285 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCC---eEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....++|||+|||+++|+++|.++|+.||. |..|.|+.++.++++|||||+|.+.++|+.||. |+|..|+|+.|.|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V 119 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEV 119 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEE
Confidence 345789999999999999999999999999 889999999888899999999999999999999 9999999999999
Q ss_pred Eeeccc
Q 016629 113 SEVATR 118 (386)
Q Consensus 113 ~~a~~~ 118 (386)
.++.+.
T Consensus 120 ~~a~~~ 125 (136)
T 2hgl_A 120 FKSHRT 125 (136)
T ss_dssp EECCHH
T ss_pred EECChH
Confidence 988653
No 125
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.65 E-value=4.8e-16 Score=126.91 Aligned_cols=76 Identities=29% Similarity=0.540 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
...++|||+|||+. +++++|.++|.+||.|..|.| ++|||||+|.+.++|+.|+..|+|..|+|+.|.|.++
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 97 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMA 97 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEES
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 34689999999999 999999999999999999998 4689999999999999999999999999999999999
Q ss_pred cccC
Q 016629 116 ATRG 119 (386)
Q Consensus 116 ~~~~ 119 (386)
.+..
T Consensus 98 ~~~~ 101 (110)
T 1wf1_A 98 GEPK 101 (110)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 126
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=2.5e-16 Score=125.64 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
....++|||+|||+.+++++|..+|..||.|. +.++.+ .++|||||+|.+.++|+.|+..|||..|+|+.|.|.++
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 91 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALA 91 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEEC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 44578999999999999999999999999996 666543 57899999999999999999999999999999999999
Q ss_pred cccC
Q 016629 116 ATRG 119 (386)
Q Consensus 116 ~~~~ 119 (386)
.+..
T Consensus 92 ~~~~ 95 (97)
T 2e5j_A 92 RQQR 95 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 127
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-17 Score=138.03 Aligned_cols=85 Identities=28% Similarity=0.457 Sum_probs=78.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEE--------EEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceec
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVA--------VKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~--------v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~ 106 (386)
..+.++|||+|||+.+++++|..+|++||.|.. |.|+.++.+ .++|||||+|.+.++|+.|+..|+|..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 356789999999999999999999999999998 889988766 88999999999999999999999999999
Q ss_pred cEEEEEEeecccCc
Q 016629 107 GRVVRVSEVATRGR 120 (386)
Q Consensus 107 Gr~L~V~~a~~~~~ 120 (386)
|++|.|.++.+...
T Consensus 84 g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 GNPIKVSFATRRAD 97 (116)
Confidence 99999999987654
No 128
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.3e-16 Score=129.26 Aligned_cols=78 Identities=33% Similarity=0.487 Sum_probs=73.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeeccc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~ 118 (386)
..+|||+|||+++|+++|.++|+.| .|..|.|+.++.++++|||||+|.+.++|++|| .|++..|+|+.|.|..+...
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4699999999999999999999999 899999999988889999999999999999999 59999999999999888654
No 129
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.64 E-value=4.9e-17 Score=127.71 Aligned_cols=80 Identities=34% Similarity=0.676 Sum_probs=72.2
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeeccc
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~ 118 (386)
++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.+ |..|+..|+|..++|+.|.|.+|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 58999999999999999999999999999999998876 88999999999999 99999999999999999999999875
Q ss_pred Cc
Q 016629 119 GR 120 (386)
Q Consensus 119 ~~ 120 (386)
..
T Consensus 81 ~~ 82 (90)
T 2ki2_A 81 KS 82 (90)
T ss_dssp --
T ss_pred CC
Confidence 44
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.9e-17 Score=134.28 Aligned_cols=82 Identities=22% Similarity=0.355 Sum_probs=72.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeC-CCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVND-RSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~-~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
....++|||+|||+.+|+++|.++|..||.|..+.++.+ ..+.++|||||+|.+.++|+.||. |||..|+|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 446789999999999999999999999999988544444 444889999999999999999999 999999999999999
Q ss_pred eccc
Q 016629 115 VATR 118 (386)
Q Consensus 115 a~~~ 118 (386)
+.+.
T Consensus 101 a~~~ 104 (124)
T 1wel_A 101 ITKK 104 (124)
T ss_dssp ECHH
T ss_pred CCHH
Confidence 8764
No 131
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-16 Score=129.73 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcC--CceeccEEEEE
Q 016629 36 IDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN--GRTIDGRVVRV 112 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~--g~~i~Gr~L~V 112 (386)
..+.++|||+|||++ +++++|.++|++||.|..|.|+. .+|||||+|.+.++|..|+..|+ +..|.|++|.|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 96 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKV 96 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 556889999999998 99999999999999999999975 47899999999999999999886 45699999999
Q ss_pred EeecccCc
Q 016629 113 SEVATRGR 120 (386)
Q Consensus 113 ~~a~~~~~ 120 (386)
.++.....
T Consensus 97 ~~a~~~~~ 104 (112)
T 1x4f_A 97 DLSEKYKK 104 (112)
T ss_dssp EEECSCSS
T ss_pred EECccccc
Confidence 99976544
No 132
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.63 E-value=1e-16 Score=130.55 Aligned_cols=83 Identities=17% Similarity=0.292 Sum_probs=77.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCC---eEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGS---VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~---I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
.....++|||+|||+++|+++|.++|..||. |..|.|+.++.++++|||||+|.+.++|+.||. |+|..|+|+.|.
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 3556889999999999999999999999998 899999998888899999999999999999999 999999999999
Q ss_pred EEeeccc
Q 016629 112 VSEVATR 118 (386)
Q Consensus 112 V~~a~~~ 118 (386)
|.++.+.
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998754
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=3.4e-16 Score=124.37 Aligned_cols=81 Identities=20% Similarity=0.413 Sum_probs=71.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
..+.++|||+|||+.+++++|..+|..||.|..+ ...+.++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 88 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYT 88 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 3457899999999999999999999999988766 223468999999999999999999999999999999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.+...
T Consensus 89 ~~~~~ 93 (96)
T 1fjc_A 89 GEKGG 93 (96)
T ss_dssp SSSCC
T ss_pred CCCCC
Confidence 76543
No 134
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.8e-15 Score=119.55 Aligned_cols=79 Identities=19% Similarity=0.369 Sum_probs=71.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|| ++++++|..+|.+||.|..|.|. .++|||||+|.+.++|..|+..|+|..|.|++|.|.+
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 3456789999996 89999999999999999999985 3678999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 987554
No 135
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=1e-16 Score=136.97 Aligned_cols=84 Identities=24% Similarity=0.293 Sum_probs=74.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
......+|||+|||+++|+++|+++|++|| |+.|.|+.++.++++|||||+|.+.++|+.|| .+++..|+|+.|.|..
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 345578999999999999999999999999 77999999987789999999999999999999 6899999999999988
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 120 a~~~~~ 125 (139)
T 2hgn_A 120 NSTTGA 125 (139)
T ss_dssp CCCSCC
T ss_pred CCCCCC
Confidence 876543
No 136
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.62 E-value=1.5e-15 Score=138.31 Aligned_cols=83 Identities=28% Similarity=0.431 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+++|+++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|++..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 445789999999999999999999999999999999999887 8999999999999999999999999999999999998
Q ss_pred eccc
Q 016629 115 VATR 118 (386)
Q Consensus 115 a~~~ 118 (386)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 7643
No 137
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.62 E-value=8.8e-17 Score=129.10 Aligned_cols=83 Identities=14% Similarity=0.266 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+++++++|..+|..||.|.. .++.+..+ .++|||||+|.+.++|+.|+. |+|..|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 345789999999999999999999999999887 45555444 789999999999999999999 999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 92 a~~~~~ 97 (101)
T 1fj7_A 92 PKGRDG 97 (101)
T ss_dssp CSCCCC
T ss_pred cCCCCC
Confidence 986543
No 138
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=5.8e-16 Score=127.01 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=70.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
..++|||+|||+.+++++|..+|++||.|..|.|+. .+|||||+|.+.++|+.|+..|||..|+|++|.|.|+..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 357999999999999999999999999999998874 568999999999999999999999999999999999976
Q ss_pred c
Q 016629 118 R 118 (386)
Q Consensus 118 ~ 118 (386)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 139
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.5e-15 Score=125.17 Aligned_cols=83 Identities=20% Similarity=0.285 Sum_probs=73.2
Q ss_pred CCCCCCCCeEEE--cCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCcee-----
Q 016629 33 KMTIDDESSVYV--GGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI----- 105 (386)
Q Consensus 33 ~~~~~~~~~lfV--gnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i----- 105 (386)
.....+..+||| |||++++++++|+++|++||.|..|.|+. .+|||||+|.+.++|++|+..|||..|
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 344556789999 88999999999999999999999998864 368999999999999999999999998
Q ss_pred ccEEEEEEeecccCc
Q 016629 106 DGRVVRVSEVATRGR 120 (386)
Q Consensus 106 ~Gr~L~V~~a~~~~~ 120 (386)
.|++|.|.++...+.
T Consensus 94 ~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 94 QKITLYLNFVEKVQW 108 (114)
T ss_dssp CEEECEEEEESCCCC
T ss_pred CCcEEEEEecccCcc
Confidence 799999999975443
No 140
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=7.4e-16 Score=123.86 Aligned_cols=81 Identities=30% Similarity=0.564 Sum_probs=74.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
..++|||+|||+.+++++|..+|+.||.|..|.|+.+..+.++|||||+|.+.++|+.|+. +|..|+|+.|.|.++.+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCc
Confidence 4689999999999999999999999999999999999855899999999999999999999 99999999999999876
Q ss_pred cCc
Q 016629 118 RGR 120 (386)
Q Consensus 118 ~~~ 120 (386)
...
T Consensus 86 ~~~ 88 (102)
T 2xs2_A 86 KQN 88 (102)
T ss_dssp CC-
T ss_pred Ccc
Confidence 543
No 141
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.61 E-value=9e-16 Score=136.42 Aligned_cols=86 Identities=21% Similarity=0.405 Sum_probs=79.4
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+.+++++|.++|+.||.|..|.|+.+..+.++|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 44567899999999999999999999999999999999988558999999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
|.....
T Consensus 164 a~~~~~ 169 (177)
T 2f3j_A 164 VASQID 169 (177)
T ss_dssp ESSGGG
T ss_pred ecCCCC
Confidence 976543
No 142
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.61 E-value=2.4e-16 Score=119.36 Aligned_cols=74 Identities=19% Similarity=0.432 Sum_probs=69.7
Q ss_pred eEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 41 SVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 41 ~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
+|||+|||+++++++|..+|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+.. ++..|+|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5999999999999999999999999999999998776 8899999999999999999994 899999999999875
No 143
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.61 E-value=7.8e-16 Score=132.60 Aligned_cols=81 Identities=31% Similarity=0.553 Sum_probs=75.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+.+++++|..+|++||.|..|.|+.+ ++|||||+|.+.++|..|+..|+|..|+|++|.|.+
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 144 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVEL 144 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4456799999999999999999999999999999999876 678999999999999999999999999999999999
Q ss_pred ecccC
Q 016629 115 VATRG 119 (386)
Q Consensus 115 a~~~~ 119 (386)
+.+..
T Consensus 145 a~~~~ 149 (150)
T 2i2y_A 145 SNGEK 149 (150)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98653
No 144
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.61 E-value=9.4e-16 Score=131.04 Aligned_cols=86 Identities=20% Similarity=0.301 Sum_probs=73.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEE------EEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV------KIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR 108 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v------~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr 108 (386)
...+.++|||+|||+.+|+++|..+|+.||.|..| .|.....+.++|||||+|.+.++|..|+..|||..|.|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 35678899999999999999999999999998764 121122457899999999999999999999999999999
Q ss_pred EEEEEeecccCc
Q 016629 109 VVRVSEVATRGR 120 (386)
Q Consensus 109 ~L~V~~a~~~~~ 120 (386)
.|.|.++.+...
T Consensus 121 ~l~V~~a~~~~~ 132 (143)
T 3egn_A 121 PMVVQFARSARP 132 (143)
T ss_dssp ECEEEECCCSCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 145
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5e-15 Score=117.32 Aligned_cols=78 Identities=21% Similarity=0.413 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
....+|||+|||+++++++|..+|..||.|..| +.++.+.. ||||+|.+.++|..|+. |+|..|+|+.|.|.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~--~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV--FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC--EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc--EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 346799999999999999999999999999987 44444422 99999999999999999 99999999999999876
Q ss_pred ccC
Q 016629 117 TRG 119 (386)
Q Consensus 117 ~~~ 119 (386)
+..
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 543
No 146
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=8.4e-16 Score=128.59 Aligned_cols=81 Identities=19% Similarity=0.302 Sum_probs=73.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCe----EEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSV----VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I----~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
....+|||+|||+++|+++|+++|++||.| ..|.|+.+..++++|||||+|.+.++|+.||.. ++..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 457899999999999999999999999976 689999987668999999999999999999996 999999999999
Q ss_pred Eeeccc
Q 016629 113 SEVATR 118 (386)
Q Consensus 113 ~~a~~~ 118 (386)
..+.+.
T Consensus 100 ~~a~~~ 105 (123)
T 2dha_A 100 FRSTAA 105 (123)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887643
No 147
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.60 E-value=2.2e-15 Score=118.06 Aligned_cols=76 Identities=25% Similarity=0.314 Sum_probs=70.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
..++|||+|||+.+++++|+++|++| .|..|.|. .++|||||+|.+.++|+.|+..|+|..++|++|.|.++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 46899999999999999999999999 99999885 4789999999999999999999999999999999999865
Q ss_pred cC
Q 016629 118 RG 119 (386)
Q Consensus 118 ~~ 119 (386)
..
T Consensus 78 ~~ 79 (88)
T 1wg1_A 78 DA 79 (88)
T ss_dssp CC
T ss_pred Cc
Confidence 44
No 148
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=3.2e-15 Score=130.55 Aligned_cols=79 Identities=19% Similarity=0.352 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceecc--EEEEEEee
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSEV 115 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G--r~L~V~~a 115 (386)
.-.+|||+||++.+|+++|.++|++||.|..|.|.... .+|||||+|.+.++|+.|+..|||..|.| +.|+|+|+
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~---~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN---NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS---SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 34678999999999999999999999999999986542 57899999999999999999999999965 99999999
Q ss_pred cccC
Q 016629 116 ATRG 119 (386)
Q Consensus 116 ~~~~ 119 (386)
++..
T Consensus 122 k~~~ 125 (164)
T 1sjr_A 122 KLTS 125 (164)
T ss_dssp SSSS
T ss_pred cCCc
Confidence 8754
No 149
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.59 E-value=3.7e-15 Score=117.33 Aligned_cols=77 Identities=27% Similarity=0.460 Sum_probs=63.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCce--eccEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT--IDGRVVRV 112 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~--i~Gr~L~V 112 (386)
...+.++|||+|||+++|+++|+++|++||.|..|.|+.+ ++|||||+|.+.++|++ |+|.. +.|+.|.|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 4556899999999999999999999999999999999875 78999999999999883 45555 45999999
Q ss_pred EeecccC
Q 016629 113 SEVATRG 119 (386)
Q Consensus 113 ~~a~~~~ 119 (386)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9988654
No 150
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.59 E-value=1.4e-15 Score=127.70 Aligned_cols=82 Identities=18% Similarity=0.340 Sum_probs=73.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeE--EEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVV--AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRV 112 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~--~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V 112 (386)
.....++|||+|||+++|+++|+++|+.| .|. .|.|+.++.++++|||||+|.+.++|++||.. ++..|+|+.|.|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 34567899999999999999999999999 577 89999988888999999999999999999994 789999999999
Q ss_pred Eeeccc
Q 016629 113 SEVATR 118 (386)
Q Consensus 113 ~~a~~~ 118 (386)
..+.+.
T Consensus 116 ~~a~~~ 121 (126)
T 2hgm_A 116 FKSSQE 121 (126)
T ss_dssp EEECHH
T ss_pred EECCHH
Confidence 887643
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.59 E-value=6.2e-15 Score=127.26 Aligned_cols=82 Identities=28% Similarity=0.587 Sum_probs=77.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+..+|||+|||+.+++++|.++|++||.|..+.++.+..+ .++|||||+|.+.++|..|+..|+|..|+|++|.|.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 3456789999999999999999999999999999999998766 889999999999999999999999999999999999
Q ss_pred eec
Q 016629 114 EVA 116 (386)
Q Consensus 114 ~a~ 116 (386)
||.
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 986
No 152
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.58 E-value=8.1e-15 Score=126.64 Aligned_cols=81 Identities=28% Similarity=0.545 Sum_probs=76.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
.++|||+|||+.+++++|.++|+.||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..+.|++|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 579999999999999999999999999999999999855 8999999999999999999999999999999999999875
Q ss_pred cC
Q 016629 118 RG 119 (386)
Q Consensus 118 ~~ 119 (386)
..
T Consensus 82 ~~ 83 (167)
T 1fxl_A 82 SS 83 (167)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 153
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=8.4e-15 Score=123.32 Aligned_cols=80 Identities=19% Similarity=0.358 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceE-EEEEeCChhhHHHHHHhcCCceecc--EEEEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCY-GFVTFGNPRSAVDAINDMNGRTIDG--RVVRVS 113 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~-aFVeF~~~~~A~~Ai~~l~g~~i~G--r~L~V~ 113 (386)
..-..|||+||++.+|+++|.++|++||.|..|.|+.. .+|| |||+|.+.++|+.|+..|||..|.| +.|+|+
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 34457889999999999999999999999999988764 4678 9999999999999999999999988 999999
Q ss_pred eecccCc
Q 016629 114 EVATRGR 120 (386)
Q Consensus 114 ~a~~~~~ 120 (386)
|+++..-
T Consensus 102 ~ak~~~l 108 (130)
T 3zzy_A 102 FSKLTSL 108 (130)
T ss_dssp ECSCSSC
T ss_pred ecCCCce
Confidence 9987543
No 154
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.58 E-value=5.1e-15 Score=128.37 Aligned_cols=82 Identities=24% Similarity=0.403 Sum_probs=76.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
+.++|||+|||+++++++|.++|+.||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 5789999999999999999999999999999999998765 789999999999999999999999999999999999987
Q ss_pred ccC
Q 016629 117 TRG 119 (386)
Q Consensus 117 ~~~ 119 (386)
+..
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 644
No 155
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.5e-15 Score=118.46 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEE-EEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAV-KIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v-~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
...++|||+|||+.+++++|..+|.+||.|..| .|+.++.+ |.|||+|.+.++|..|+..|||..|+|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~---~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 89 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET---AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYI 89 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS---EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC---CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 346899999999999999999999999999999 57776544 44999999999999999999999999999999999
Q ss_pred ccc
Q 016629 116 ATR 118 (386)
Q Consensus 116 ~~~ 118 (386)
.+.
T Consensus 90 ~~~ 92 (96)
T 2e44_A 90 PDE 92 (96)
T ss_dssp CCC
T ss_pred Ccc
Confidence 875
No 156
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.57 E-value=6.8e-15 Score=122.65 Aligned_cols=77 Identities=18% Similarity=0.226 Sum_probs=70.4
Q ss_pred CeEEEcCC----CCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCC----hhh----HHHHHH--hcCCce
Q 016629 40 SSVYVGGL----PYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGN----PRS----AVDAIN--DMNGRT 104 (386)
Q Consensus 40 ~~lfVgnL----p~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~----~~~----A~~Ai~--~l~g~~ 104 (386)
+.|||+|| |+.+++.+|..+|+.||+|..|.++.|+.| .++|||||+|.+ +++ |..|+. .|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 999999999999999999999999999999 999999999996 434 788888 789999
Q ss_pred eccEEEEEEeec
Q 016629 105 IDGRVVRVSEVA 116 (386)
Q Consensus 105 i~Gr~L~V~~a~ 116 (386)
|+|++|.|.+..
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999764
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.56 E-value=1.5e-14 Score=126.10 Aligned_cols=80 Identities=25% Similarity=0.514 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
....+|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..|+|++|.|.+|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 34789999999999999999999999999999999999755 88999999999999999999999999999999999987
Q ss_pred c
Q 016629 116 A 116 (386)
Q Consensus 116 ~ 116 (386)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.2e-14 Score=125.54 Aligned_cols=80 Identities=25% Similarity=0.490 Sum_probs=74.9
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecccC
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRG 119 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~~ 119 (386)
.+|||+|||+++|+++|.++|++||.|..|.|+.++.+.++|||||+|.+.++|..|+..|+|..+.|+.|.|.++.+..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 48999999999999999999999999999999999888899999999999999999999999999999999999987544
No 159
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.3e-15 Score=116.19 Aligned_cols=78 Identities=28% Similarity=0.460 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
.+.++|||+|||+++++++|..+|++||.|..|.|+.+ ++|||||+|.+.++|++|+.. +..+.|++|.|.++.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecC
Confidence 45789999999999999999999999999999999865 789999999999999765332 345689999999987
Q ss_pred ccCc
Q 016629 117 TRGR 120 (386)
Q Consensus 117 ~~~~ 120 (386)
+...
T Consensus 77 ~~~~ 80 (88)
T 1wf0_A 77 PKHN 80 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6544
No 160
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.56 E-value=1.7e-14 Score=128.55 Aligned_cols=85 Identities=25% Similarity=0.505 Sum_probs=79.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.+
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 356799999999999999999999999999999999999755 7899999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 191 a~~~~~ 196 (198)
T 2yh0_A 191 ASVGAK 196 (198)
T ss_dssp SCCCCC
T ss_pred CCCCCC
Confidence 987543
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.56 E-value=1.3e-14 Score=131.08 Aligned_cols=85 Identities=25% Similarity=0.509 Sum_probs=79.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
...++|||+|||+.+++++|.++|+.||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999998766 88999999999999999999999999999999999999
Q ss_pred cccCcC
Q 016629 116 ATRGRK 121 (386)
Q Consensus 116 ~~~~~~ 121 (386)
.+....
T Consensus 203 ~~~~~~ 208 (216)
T 2qfj_A 203 VTPPMP 208 (216)
T ss_dssp SSCSST
T ss_pred cCCCCC
Confidence 876543
No 162
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.56 E-value=1.2e-14 Score=129.24 Aligned_cols=84 Identities=26% Similarity=0.597 Sum_probs=76.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVS 113 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~ 113 (386)
...+.++|||+|||+++|+++|.++|+.||.|..|.|+.++.+ .++|||||+|.+.++|..|+.. ++..|.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 4556789999999999999999999999999999999999876 7899999999999999999985 9999999999999
Q ss_pred eecccC
Q 016629 114 EVATRG 119 (386)
Q Consensus 114 ~a~~~~ 119 (386)
++....
T Consensus 88 ~~~~~~ 93 (196)
T 1l3k_A 88 RAVSRE 93 (196)
T ss_dssp ECCC--
T ss_pred cccCcc
Confidence 986543
No 163
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.55 E-value=9.6e-15 Score=132.95 Aligned_cols=80 Identities=29% Similarity=0.532 Sum_probs=74.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeeccc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~ 118 (386)
..+|||+|||+.+++++|.++|+.||.|..|.|+.+..+ ++|||||+|.+.++|..|+..|||..|+|++|.|.++.++
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~-~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTE-EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCC-CceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 568999999999999999999999999999999988544 7899999999999999999999999999999999999764
Q ss_pred C
Q 016629 119 G 119 (386)
Q Consensus 119 ~ 119 (386)
.
T Consensus 182 ~ 182 (213)
T 4f02_A 182 K 182 (213)
T ss_dssp H
T ss_pred c
Confidence 3
No 164
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.55 E-value=1.7e-14 Score=128.34 Aligned_cols=85 Identities=22% Similarity=0.479 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
....++|||+|||+.+++++|.++|+.||.|..|.|+.+..+ .++|||||+|.+.++|..|+.. +|..|+|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 345689999999999999999999999999999999999766 8999999999999999999996 89999999999999
Q ss_pred ecccCcC
Q 016629 115 VATRGRK 121 (386)
Q Consensus 115 a~~~~~~ 121 (386)
+.+....
T Consensus 180 a~~k~~~ 186 (196)
T 1l3k_A 180 ALSKQEM 186 (196)
T ss_dssp CC-----
T ss_pred cCChhHh
Confidence 9876553
No 165
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.55 E-value=1.6e-14 Score=120.82 Aligned_cols=75 Identities=17% Similarity=0.197 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceE-EEEEeCChhhHHHHHHhcCCceecc--EEEEEEeec
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCY-GFVTFGNPRSAVDAINDMNGRTIDG--RVVRVSEVA 116 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~-aFVeF~~~~~A~~Ai~~l~g~~i~G--r~L~V~~a~ 116 (386)
..|||+||++.+++++|..+|++||.|..|.|+.. .|| |||+|.+.++|..|+..|||..|.| +.|.|.+|.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 35689999999999999999999999999998753 276 9999999999999999999999987 699999998
Q ss_pred ccC
Q 016629 117 TRG 119 (386)
Q Consensus 117 ~~~ 119 (386)
+..
T Consensus 101 ~~~ 103 (124)
T 2e5i_A 101 PTR 103 (124)
T ss_dssp CSC
T ss_pred CCc
Confidence 764
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=1.3e-14 Score=131.90 Aligned_cols=78 Identities=26% Similarity=0.288 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCC-CCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLP-YSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp-~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
.+.++|||+||| +.+++++|.++|++||.|..|.|+.+ .+|||||+|.+.++|+.||..|||..|.|++|.|.++
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 357899999999 89999999999999999999999875 4789999999999999999999999999999999998
Q ss_pred ccc
Q 016629 116 ATR 118 (386)
Q Consensus 116 ~~~ 118 (386)
...
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 654
No 167
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=1.1e-14 Score=113.20 Aligned_cols=71 Identities=25% Similarity=0.602 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcC----C-------CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCcee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i 105 (386)
.+.++|||+|||+++++++|.++|.+| | .|..|.+..+ +|||||+|.+.++|..|+ .|+|..|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 356899999999999999999999999 8 9999998764 789999999999999999 9999999
Q ss_pred ccEEEEEE
Q 016629 106 DGRVVRVS 113 (386)
Q Consensus 106 ~Gr~L~V~ 113 (386)
.|+.|.|+
T Consensus 78 ~g~~l~V~ 85 (87)
T 2hzc_A 78 QGQSLKIR 85 (87)
T ss_dssp TTEECEEE
T ss_pred CCeEEEEe
Confidence 99999986
No 168
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.54 E-value=7.1e-15 Score=136.35 Aligned_cols=114 Identities=22% Similarity=0.288 Sum_probs=86.6
Q ss_pred CCCCCCCCcccccccCCcchhhhh--hhhh---h-------h-----cCCCCCCCCeEEEcCCCCCC---------cHHH
Q 016629 2 VCREGGRQGVSTSIVVPIKARVIF--NLIE---E-------R-----VKMTIDDESSVYVGGLPYSA---------NEDS 55 (386)
Q Consensus 2 ~~~~~~~~~~~~~~~~p~~~~~~~--~~~~---~-------~-----~~~~~~~~~~lfVgnLp~~~---------te~~ 55 (386)
.|..+..|.-.|.+|.+....... .... . . ........++||||||++.+ ++++
T Consensus 80 ~C~~G~~C~y~H~lPt~~d~~~~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~ 159 (240)
T 3u1l_A 80 MCCLGPKCEYLHHIPDEEDIGKLALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESR 159 (240)
T ss_dssp CCSCGGGCSSBBSCCCHHHHHHHHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHH
T ss_pred CCCCCCCCCccCCCCCccchhhhcccccCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHH
Confidence 488899999999866543322100 0000 0 0 01123457899999999998 7999
Q ss_pred HHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCcee------------ccEEEEEEeecccCc
Q 016629 56 VRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI------------DGRVVRVSEVATRGR 120 (386)
Q Consensus 56 L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i------------~Gr~L~V~~a~~~~~ 120 (386)
|..+|++||.|..|.|+. .+|||||+|.+.++|+.|+..|+|..| .|+.|.|.||...+.
T Consensus 160 L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 160 IRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp HHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred HHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCC
Confidence 999999999999999986 478999999999999999999999999 899999999987554
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=1e-14 Score=115.14 Aligned_cols=75 Identities=25% Similarity=0.377 Sum_probs=66.2
Q ss_pred CCCCe-EEEcCCCCCCcHHH----HHHHhhcC-CCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEE
Q 016629 37 DDESS-VYVGGLPYSANEDS----VRKVFDKY-GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (386)
Q Consensus 37 ~~~~~-lfVgnLp~~~te~~----L~~~F~~~-G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L 110 (386)
++..+ |||+|||+.+++++ |..+|++| |+|..|. .|||||+|.+.++|..|++.|+|..|.|++|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt---------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i 76 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT---------GCSAILRFINQDSAERAQKRMENEDVFGNRI 76 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC---------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe---------cCEEEEEECCHHHHHHHHHHhcCCccCCceE
Confidence 44555 99999999999987 56899999 5999881 2899999999999999999999999999999
Q ss_pred EEEeecccCc
Q 016629 111 RVSEVATRGR 120 (386)
Q Consensus 111 ~V~~a~~~~~ 120 (386)
+|.+|.....
T Consensus 77 ~v~~A~~~sd 86 (96)
T 2diu_A 77 IVSFTPKNRE 86 (96)
T ss_dssp EEESSCCSCC
T ss_pred EEEecCCCcc
Confidence 9999987654
No 170
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=1.4e-14 Score=120.61 Aligned_cols=78 Identities=19% Similarity=0.371 Sum_probs=71.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
..+.++|||+|| ++++++|..+|++||.|..|.|. .++|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a 108 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIA 108 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEe
Confidence 456789999996 69999999999999999999986 36789999999999999999999999999999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.+...
T Consensus 109 ~~~~~ 113 (121)
T 2bz2_A 109 RKQPM 113 (121)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 87543
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.52 E-value=2.7e-14 Score=124.46 Aligned_cols=81 Identities=19% Similarity=0.330 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec---cEEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVRV 112 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~---Gr~L~V 112 (386)
.....+|||+|||+.+|+++|.++|++||.|..|.|+.+..+.++|||||+|.+.++|..|+..|||..+. |++|.|
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V 171 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVV 171 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEE
Confidence 34578999999999999999999999999999999999987788999999999999999999999998776 499999
Q ss_pred Eeec
Q 016629 113 SEVA 116 (386)
Q Consensus 113 ~~a~ 116 (386)
.||.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9873
No 172
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.52 E-value=1.1e-14 Score=126.28 Aligned_cols=79 Identities=16% Similarity=0.445 Sum_probs=74.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
..+|||+|||+.+++++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+. ++|..|+|++|.|.+|.+
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~p 165 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEP 165 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCC
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCC
Confidence 569999999999999999999999999999999998765 899999999999999999998 899999999999999976
Q ss_pred c
Q 016629 118 R 118 (386)
Q Consensus 118 ~ 118 (386)
+
T Consensus 166 k 166 (167)
T 2cjk_A 166 R 166 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 173
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=7.9e-14 Score=113.28 Aligned_cols=82 Identities=24% Similarity=0.281 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCC-----CCcHHHHHHHhhcCCCeEEEEEeeCCCC--CCceEEEEEeCChhhHHHHHHhcCCceeccEE
Q 016629 37 DDESSVYVGGLPY-----SANEDSVRKVFDKYGSVVAVKIVNDRST--RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV 109 (386)
Q Consensus 37 ~~~~~lfVgnLp~-----~~te~~L~~~F~~~G~I~~v~i~~~~~~--~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~ 109 (386)
.+..+|+|.||.. +.++++|+++|++||.|..|.|+.++.+ +++|||||+|.+.++|..|+..|||..|+|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 3577999999963 2378999999999999999999988643 78999999999999999999999999999999
Q ss_pred EEEEeeccc
Q 016629 110 VRVSEVATR 118 (386)
Q Consensus 110 L~V~~a~~~ 118 (386)
|.|.++...
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999998653
No 174
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.51 E-value=5.1e-14 Score=126.74 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=71.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
.++|||+|||+.+++++|..+|++||.|..|.|+.+..+.++|||||+|.+.++|+.|+..+ +..|+|++|.|.++..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 47999999999999999999999999999999999877789999999999999999999865 5699999999988653
No 175
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.51 E-value=5e-14 Score=122.06 Aligned_cols=80 Identities=29% Similarity=0.520 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceecc--EEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDG--RVVRV 112 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G--r~L~V 112 (386)
..+..+|||+|||+.+++++|.++|++||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..+.| ++|.|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 346789999999999999999999999999999999998855 889999999999999999999999999988 99999
Q ss_pred Eee
Q 016629 113 SEV 115 (386)
Q Consensus 113 ~~a 115 (386)
.||
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 886
No 176
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=2.9e-14 Score=117.16 Aligned_cols=77 Identities=26% Similarity=0.452 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC----CCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST----RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~----~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
....++|||+|||+.+++++|.++|++||.|. +.++.+..+ .++|||||+|.+.++|+.||..|+ .++|+.|.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34578999999999999999999999999999 877776653 789999999999999999999984 47777777
Q ss_pred EEee
Q 016629 112 VSEV 115 (386)
Q Consensus 112 V~~a 115 (386)
|..+
T Consensus 82 ~~~~ 85 (114)
T 2dnl_A 82 CVSS 85 (114)
T ss_dssp EECC
T ss_pred eccC
Confidence 7644
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.49 E-value=5.3e-14 Score=127.05 Aligned_cols=81 Identities=30% Similarity=0.539 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
+.++|||+|||+++|+++|.++|+.||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 3679999999999999999999999999999999998766 899999999999999999999999999999999998775
Q ss_pred cc
Q 016629 117 TR 118 (386)
Q Consensus 117 ~~ 118 (386)
..
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 178
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.48 E-value=7.5e-14 Score=120.50 Aligned_cols=79 Identities=27% Similarity=0.564 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEE--EEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRV--VRVS 113 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~--L~V~ 113 (386)
....+|||+|||+.+++++|..+|++||.|..+.|+.+..+ .++|||||+|.+.++|..|+..|||..+.|+. |.|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~ 165 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVK 165 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEE
Confidence 35689999999999999999999999999999999998755 78999999999999999999999999999964 8888
Q ss_pred ee
Q 016629 114 EV 115 (386)
Q Consensus 114 ~a 115 (386)
||
T Consensus 166 ~A 167 (167)
T 1fxl_A 166 FA 167 (167)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.48 E-value=6.9e-14 Score=121.84 Aligned_cols=82 Identities=26% Similarity=0.511 Sum_probs=74.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC---CCceEEEEEeCChhhHHHHHHhcCCceec---cEEEE
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTID---GRVVR 111 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~---~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~---Gr~L~ 111 (386)
+.++|||+|||+++|+++|.++|++||.|..|.|+.++.+ .++|||||+|.+.++|..|+..|+|..+. ++.|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 5689999999999999999999999999999999998877 68999999999999999999999998876 67788
Q ss_pred EEeecccC
Q 016629 112 VSEVATRG 119 (386)
Q Consensus 112 V~~a~~~~ 119 (386)
|.++....
T Consensus 82 ~~~~~~~~ 89 (175)
T 3nmr_A 82 MKPADSEK 89 (175)
T ss_dssp EEECGGGC
T ss_pred Eccccccc
Confidence 88776543
No 180
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.48 E-value=8.7e-14 Score=121.74 Aligned_cols=78 Identities=19% Similarity=0.391 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
.+..+|||+|||+.+++++|.++|+.||.|..+ ...+.++|||||+|.+.++|..|+..|+|..|+|+.|.|.|+.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 456899999999999999999999999988766 3344789999999999999999999999999999999999997
Q ss_pred cc
Q 016629 117 TR 118 (386)
Q Consensus 117 ~~ 118 (386)
++
T Consensus 173 ~k 174 (175)
T 1fje_B 173 EK 174 (175)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.47 E-value=1.7e-13 Score=129.40 Aligned_cols=83 Identities=19% Similarity=0.410 Sum_probs=75.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEE
Q 016629 35 TIDDESSVYVGGLPYSANEDSVR----KVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L 110 (386)
...+.++|||+|||+.+++++|+ ++|+.||.|..|.|+. .+.++|||||+|.+.++|..|+..|+|..|.|+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 45678999999999999999966 8999999999999876 44789999999999999999999999999999999
Q ss_pred EEEeecccC
Q 016629 111 RVSEVATRG 119 (386)
Q Consensus 111 ~V~~a~~~~ 119 (386)
.|.++....
T Consensus 83 ~v~~a~~~~ 91 (282)
T 3pgw_A 83 RIQYAKTDS 91 (282)
T ss_pred EEEEeccCc
Confidence 999996544
No 182
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.46 E-value=3.7e-13 Score=127.12 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec-cEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~-Gr~L~V~~ 114 (386)
..+.++|||+|||+.+++++|.++|++||.|..|.|+.+. +|||||+|.+.++|..|+..|||..|. |+.|.|.|
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 279 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISF 279 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEE
Confidence 3457899999999999999999999999999999998653 589999999999999999999999999 99999999
Q ss_pred ec
Q 016629 115 VA 116 (386)
Q Consensus 115 a~ 116 (386)
++
T Consensus 280 ak 281 (282)
T 3pgw_A 280 AK 281 (282)
T ss_pred ec
Confidence 86
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.45 E-value=8.6e-14 Score=128.04 Aligned_cols=79 Identities=24% Similarity=0.362 Sum_probs=73.8
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
.++.++|||+|||+ .+++++|.++|+.||.|..|.|+.+. +|||||+|.+.++|+.|+..|+|..|.|+.|.|.+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45689999999999 99999999999999999999998874 78999999999999999999999999999999999
Q ss_pred eccc
Q 016629 115 VATR 118 (386)
Q Consensus 115 a~~~ 118 (386)
+...
T Consensus 107 a~~~ 110 (229)
T 2adc_A 107 SKHQ 110 (229)
T ss_dssp CSCC
T ss_pred ecCc
Confidence 8754
No 184
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.45 E-value=1e-13 Score=120.13 Aligned_cols=79 Identities=32% Similarity=0.725 Sum_probs=72.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVA 116 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~ 116 (386)
+.++|||+|||+++|+++|.++|+.||.|..|.|+.++.+ .++|||||+|.+.++|..|+.. +..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 4679999999999999999999999999999999998766 8999999999999999999994 678999999998875
Q ss_pred cc
Q 016629 117 TR 118 (386)
Q Consensus 117 ~~ 118 (386)
+.
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 43
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.45 E-value=1.6e-13 Score=130.22 Aligned_cols=83 Identities=23% Similarity=0.424 Sum_probs=76.7
Q ss_pred CCCCCCeEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEeeCCC--CCCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 35 TIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRS--TRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~--~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
...+..+|||+|||+. +++++|.++|+.||.|..|.|+.+.. +.++|||||+|.+.++|..|+ .|||..|+|++|.
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999999887 689999999999999999999 9999999999999
Q ss_pred EEeeccc
Q 016629 112 VSEVATR 118 (386)
Q Consensus 112 V~~a~~~ 118 (386)
|.|+.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999864
No 186
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.45 E-value=2.8e-13 Score=128.07 Aligned_cols=85 Identities=16% Similarity=0.223 Sum_probs=78.9
Q ss_pred CCCCCeEEEcCCCCCC-cHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 36 IDDESSVYVGGLPYSA-NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~-te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
..+..+|||+|||+.+ ++++|.++|+.||.|..|.|+.+..+.++|||||+|.+.++|..|+..|+|..|+|++|.|.+
T Consensus 181 ~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 260 (284)
T 3smz_A 181 LLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260 (284)
T ss_dssp TTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEE
Confidence 3567899999999995 999999999999999999999998778999999999999999999999999999999999999
Q ss_pred ecccCc
Q 016629 115 VATRGR 120 (386)
Q Consensus 115 a~~~~~ 120 (386)
+.+...
T Consensus 261 a~~~~~ 266 (284)
T 3smz_A 261 CAPGPP 266 (284)
T ss_dssp CCSSSC
T ss_pred ecCCCc
Confidence 976543
No 187
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=7.4e-13 Score=108.44 Aligned_cols=83 Identities=19% Similarity=0.315 Sum_probs=70.6
Q ss_pred CCCCCCeEEEcCCCCCCc-----------HHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCc
Q 016629 35 TIDDESSVYVGGLPYSAN-----------EDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~t-----------e~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~ 103 (386)
...+..+|+|.||..... +++|.++|++||.|..|.| .++ .++|||||+|.+.++|+.|+..|||.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 345688999999954432 5799999999999999966 443 37899999999999999999999999
Q ss_pred eeccEEEEEEeecccCc
Q 016629 104 TIDGRVVRVSEVATRGR 120 (386)
Q Consensus 104 ~i~Gr~L~V~~a~~~~~ 120 (386)
.|+|++|.|.++.+...
T Consensus 88 ~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 88 WFGGRQITAQAWDGTTD 104 (112)
T ss_dssp EETTEECEEEECCSCCC
T ss_pred EECCcEEEEEEeCCCCC
Confidence 99999999999976543
No 188
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.42 E-value=7.6e-14 Score=113.17 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=65.4
Q ss_pred EEcCCCCCCcHHHHHHHh------------hcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEE
Q 016629 43 YVGGLPYSANEDSVRKVF------------DKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (386)
Q Consensus 43 fVgnLp~~~te~~L~~~F------------~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L 110 (386)
++.|||+.+++++|.++| ++||.|..|.|+.+..++++|||||+|.+.++|..|+..|||..++|++|
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 367888888888777666 99999999999988777899999999999999999999999999999999
Q ss_pred EEEee
Q 016629 111 RVSEV 115 (386)
Q Consensus 111 ~V~~a 115 (386)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.41 E-value=1.2e-12 Score=123.72 Aligned_cols=84 Identities=23% Similarity=0.345 Sum_probs=78.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-CCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-RGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
+..++|||+|||+.+++++|.++|+.||.|..|.|+.+..+ .++|||||+|.+.++|..|+..|+|..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 45689999999999999999999999999999999998766 89999999999999999999999999999999999999
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.+...
T Consensus 173 ~~~~~ 177 (284)
T 3smz_A 173 DAGQL 177 (284)
T ss_dssp CGGGC
T ss_pred CCCCC
Confidence 76543
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.40 E-value=4.4e-13 Score=125.76 Aligned_cols=78 Identities=23% Similarity=0.491 Sum_probs=72.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+++|+++|..+|+.||.|..|.|.. .+|||||+|.+.++|..|+..|+|..|.|+.|.|.+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 345678999999999999999999999999999999965 468999999999999999999999999999999999
Q ss_pred ecc
Q 016629 115 VAT 117 (386)
Q Consensus 115 a~~ 117 (386)
+.+
T Consensus 93 a~~ 95 (261)
T 3sde_A 93 ATH 95 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 875
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=2.3e-13 Score=121.64 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=72.0
Q ss_pred CCeEEEcCCCC-CCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecc
Q 016629 39 ESSVYVGGLPY-SANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVAT 117 (386)
Q Consensus 39 ~~~lfVgnLp~-~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~ 117 (386)
.++|||+|||+ .+++++|.++|+.||.|..|.|+.++ +|||||+|.+.++|..|+..|+|..|.|+.|.|.++..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecC
Confidence 67999999999 99999999999999999999998764 68999999999999999999999999999999999876
Q ss_pred cC
Q 016629 118 RG 119 (386)
Q Consensus 118 ~~ 119 (386)
..
T Consensus 79 ~~ 80 (198)
T 1qm9_A 79 QN 80 (198)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.39 E-value=3.5e-13 Score=120.50 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec-cEEEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~-Gr~L~V~ 113 (386)
.++..+|||+|||+.+++++|.++|+.|| .|..|.|+.+ .+|||||+|.+.++|..|+..|+|..|+ |++|.|.
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 35688999999999999999999999999 9999999764 3689999999999999999999999999 9999999
Q ss_pred eeccc
Q 016629 114 EVATR 118 (386)
Q Consensus 114 ~a~~~ 118 (386)
|+.+.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 98753
No 193
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.39 E-value=3.9e-13 Score=122.01 Aligned_cols=79 Identities=11% Similarity=0.229 Sum_probs=70.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCe--EEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccE----E
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSV--VAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGR----V 109 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I--~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr----~ 109 (386)
.++..+|||+|||+.+|+++|.++|++||.| ..|.|+.+. +..+|||||+|.+.++|..||..|||..|.|. +
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 3567899999999999999999999999999 899988775 44569999999999999999999999999886 6
Q ss_pred EEEEee
Q 016629 110 VRVSEV 115 (386)
Q Consensus 110 L~V~~a 115 (386)
+.|.+|
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777765
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.39 E-value=7e-13 Score=121.90 Aligned_cols=79 Identities=19% Similarity=0.373 Sum_probs=72.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec-cEEEEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID-GRVVRVS 113 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~-Gr~L~V~ 113 (386)
.++..+|||+|||+.+++++|.++|.+|| .|..|.|+.. .+|||||+|.+.++|..|+..|+|..|+ |++|.|.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 45679999999999999999999999999 9999999654 4689999999999999999999999999 9999999
Q ss_pred eeccc
Q 016629 114 EVATR 118 (386)
Q Consensus 114 ~a~~~ 118 (386)
|+.+.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 98753
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.38 E-value=9.4e-13 Score=106.89 Aligned_cols=81 Identities=22% Similarity=0.274 Sum_probs=69.8
Q ss_pred CCCeEEEcCC--CCCC--------cHHHHHHHhhcCCCeEEEEEeeCCCC---CCceEEEEEeCChhhHHHHHHhcCCce
Q 016629 38 DESSVYVGGL--PYSA--------NEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRT 104 (386)
Q Consensus 38 ~~~~lfVgnL--p~~~--------te~~L~~~F~~~G~I~~v~i~~~~~~---~~kG~aFVeF~~~~~A~~Ai~~l~g~~ 104 (386)
+...|.|.|+ |..+ .+++|++.|++||.|..|.|+.+..+ .++|||||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 5678888887 3333 23689999999999999999988764 578999999999999999999999999
Q ss_pred eccEEEEEEeeccc
Q 016629 105 IDGRVVRVSEVATR 118 (386)
Q Consensus 105 i~Gr~L~V~~a~~~ 118 (386)
++|++|.|.++...
T Consensus 84 f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 84 FANRVVVTKYCDPD 97 (105)
T ss_dssp ETTEECEEEEECHH
T ss_pred eCCCEEEEEEeCHH
Confidence 99999999998653
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.38 E-value=1.3e-13 Score=120.73 Aligned_cols=84 Identities=13% Similarity=0.302 Sum_probs=70.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 35 TIDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
...+.++|||+|||+++++++|.++|..||.|..+.|.....+.++|||||+|.+.++|..|++ |+|..|.|++|.|.+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEec
Confidence 3456889999999999999999999999998766333322333789999999999999999995 999999999999999
Q ss_pred ecccC
Q 016629 115 VATRG 119 (386)
Q Consensus 115 a~~~~ 119 (386)
+.+..
T Consensus 88 ~~~~~ 92 (175)
T 1fje_B 88 PKGRD 92 (175)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 87643
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.36 E-value=1e-12 Score=124.62 Aligned_cols=84 Identities=12% Similarity=0.299 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCC-CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEee
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYG-SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEV 115 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G-~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a 115 (386)
...++|||+|||+.+++++|.++|..|| .|..|.|+.+..+.++|||||+|.+.++|..|+..|+|..|.|+.|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4678999999999999999999999999 999999998887778999999999999999999999999999999999998
Q ss_pred cccCc
Q 016629 116 ATRGR 120 (386)
Q Consensus 116 ~~~~~ 120 (386)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 76543
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.36 E-value=1.9e-12 Score=121.44 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcC-Cceec---cEEEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN-GRTID---GRVVRV 112 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~-g~~i~---Gr~L~V 112 (386)
.+..+|||+|||+.+|+++|.++|+.||.|..|.|+.+..+.++|||||+|.+.++|..|+..|+ |..+. |++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 35789999999999999999999999999999999999766899999999999999999999994 55554 999999
Q ss_pred Eeeccc
Q 016629 113 SEVATR 118 (386)
Q Consensus 113 ~~a~~~ 118 (386)
.++.+.
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 988754
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.34 E-value=2.6e-12 Score=111.66 Aligned_cols=75 Identities=23% Similarity=0.531 Sum_probs=67.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcC----C-------CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~ 106 (386)
+.++|||+|||+++|+++|.++|++| | .|..+.+.. .+|||||+|.+.++|..|+ .|+|..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~-----~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET-----TTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC-----CCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 46799999999999999999999999 7 778887754 4789999999999999999 89999999
Q ss_pred cEEEEEEeeccc
Q 016629 107 GRVVRVSEVATR 118 (386)
Q Consensus 107 Gr~L~V~~a~~~ 118 (386)
|++|.|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (172)
T 2g4b_A 77 GQSLKIRRPHDY 88 (172)
T ss_dssp TEECEEECCSSC
T ss_pred CceeeecCCccc
Confidence 999999987543
No 200
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=3.4e-12 Score=105.82 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=69.7
Q ss_pred CCCeEEEcCCCC--C---CcHHHHHHHhhcCCCeEEEEEeeCCCC-----CCceEEEEEeCChhhHHHHHHhcCCceecc
Q 016629 38 DESSVYVGGLPY--S---ANEDSVRKVFDKYGSVVAVKIVNDRST-----RGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (386)
Q Consensus 38 ~~~~lfVgnLp~--~---~te~~L~~~F~~~G~I~~v~i~~~~~~-----~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G 107 (386)
+..+|+|.|+-. + -.+++|++.|++||.|..|.|+.+..+ +++|||||+|.+.++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 578999999832 2 236889999999999999999987542 567999999999999999999999999999
Q ss_pred EEEEEEeecc
Q 016629 108 RVVRVSEVAT 117 (386)
Q Consensus 108 r~L~V~~a~~ 117 (386)
+.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999865
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.33 E-value=3.8e-12 Score=113.24 Aligned_cols=75 Identities=23% Similarity=0.516 Sum_probs=66.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcC----C-------CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKY----G-------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~----G-------~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~ 106 (386)
..++|||+|||+.+++++|.++|+.| | .|..+.+.. .+|||||+|.+.++|..|+ .|+|..|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~-----~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----DKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET-----TTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC-----CCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 46899999999999999999999999 5 667776643 5789999999999999999 79999999
Q ss_pred cEEEEEEeeccc
Q 016629 107 GRVVRVSEVATR 118 (386)
Q Consensus 107 Gr~L~V~~a~~~ 118 (386)
|+.|.|.++...
T Consensus 77 g~~i~v~~~~~~ 88 (198)
T 2yh0_A 77 GQSLKIRRPHDY 88 (198)
T ss_dssp TEEEEEECCCCC
T ss_pred CceEEEeCCCCC
Confidence 999999987654
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=8.4e-12 Score=100.35 Aligned_cols=66 Identities=17% Similarity=0.289 Sum_probs=58.4
Q ss_pred CCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEeecccCc
Q 016629 49 YSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSEVATRGR 120 (386)
Q Consensus 49 ~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~a~~~~~ 120 (386)
..+++++|+.+|++||.|..|.|+. .++|||||+|.+.++|+.|+..+++ +.|++|.|.|+.+...
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 5689999999999999999999983 5789999999999999999998654 6799999999876654
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=6.4e-12 Score=122.40 Aligned_cols=78 Identities=21% Similarity=0.298 Sum_probs=67.6
Q ss_pred CCCCCCCeEEEcC--CCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceec---cE
Q 016629 34 MTIDDESSVYVGG--LPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTID---GR 108 (386)
Q Consensus 34 ~~~~~~~~lfVgn--Lp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~---Gr 108 (386)
....+..+||||| |++.+|+++|+++|++||.|..|.|.. .+|||||+|.+.++|++||+.|||..+. |+
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 3456788999999 578999999999999999999987754 5789999999999999999999999883 44
Q ss_pred --EEEEEeec
Q 016629 109 --VVRVSEVA 116 (386)
Q Consensus 109 --~L~V~~a~ 116 (386)
.|.|.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 68888874
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.18 E-value=7.7e-11 Score=96.99 Aligned_cols=78 Identities=17% Similarity=0.269 Sum_probs=64.1
Q ss_pred CCCeEEEcCCCCCC----------cHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceecc
Q 016629 38 DESSVYVGGLPYSA----------NEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (386)
Q Consensus 38 ~~~~lfVgnLp~~~----------te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G 107 (386)
+...|.+.|+=... .+++|.+.|++||.|..|.|..+. .+|||||+|.+.++|..|+..|||..|+|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45667777762211 235789999999999999986552 58999999999999999999999999999
Q ss_pred EEEEEEeeccc
Q 016629 108 RVVRVSEVATR 118 (386)
Q Consensus 108 r~L~V~~a~~~ 118 (386)
+.|.|.++...
T Consensus 83 R~i~v~~~~~~ 93 (114)
T 3s6e_A 83 KMITAAYVPLP 93 (114)
T ss_dssp EECEEEEECHH
T ss_pred EEEEEEEEcHH
Confidence 99999998543
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.07 E-value=3e-10 Score=88.77 Aligned_cols=75 Identities=21% Similarity=0.359 Sum_probs=63.4
Q ss_pred CCCCCeEEEcCCCC----CCcH----HHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceecc
Q 016629 36 IDDESSVYVGGLPY----SANE----DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG 107 (386)
Q Consensus 36 ~~~~~~lfVgnLp~----~~te----~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G 107 (386)
.++..||+|.-+|. +... .+|.+.|.+||.|..++|+.+ .+||+|.+.++|.+||. |||..++|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 35677888877662 2323 578999999999999999886 59999999999999999 99999999
Q ss_pred EEEEEEeeccc
Q 016629 108 RVVRVSEVATR 118 (386)
Q Consensus 108 r~L~V~~a~~~ 118 (386)
+.|+|.++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999998763
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=3.5e-10 Score=93.67 Aligned_cols=78 Identities=12% Similarity=0.185 Sum_probs=69.4
Q ss_pred CCCCCCCeEEEcCCCCC-CcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCC-hhhHHHHHHhc--CCceeccEE
Q 016629 34 MTIDDESSVYVGGLPYS-ANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGN-PRSAVDAINDM--NGRTIDGRV 109 (386)
Q Consensus 34 ~~~~~~~~lfVgnLp~~-~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~-~~~A~~Ai~~l--~g~~i~Gr~ 109 (386)
...++++.|||+||++. ++.++|+++|+.||.|..|.|+.+.. .|||.|.+ ..+|..|+..| .+..|.|..
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~ 87 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRNKE 87 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTSSS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeCcE
Confidence 45678999999999999 99999999999999999999988654 69999999 89999999999 478899988
Q ss_pred EEEEeec
Q 016629 110 VRVSEVA 116 (386)
Q Consensus 110 L~V~~a~ 116 (386)
+.+++..
T Consensus 88 ~~~evL~ 94 (121)
T 1owx_A 88 VTWEVLE 94 (121)
T ss_dssp EEEEECC
T ss_pred EEEEECC
Confidence 8887654
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=8.6e-09 Score=80.93 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=62.9
Q ss_pred CCCCCCeEEEcCCCCC-----C-cH---HHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCcee
Q 016629 35 TIDDESSVYVGGLPYS-----A-NE---DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTI 105 (386)
Q Consensus 35 ~~~~~~~lfVgnLp~~-----~-te---~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i 105 (386)
-.++..||+|.-++.. + .+ .+|.+.|..||.|..++|+.+ -+||+|.+.++|.+||. |+|..+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------cEEEEEcChHHHHHHHh-cCCeee
Confidence 3567889999877643 2 21 468899999999999999887 49999999999999999 999999
Q ss_pred ccEEEEEEeec
Q 016629 106 DGRVVRVSEVA 116 (386)
Q Consensus 106 ~Gr~L~V~~a~ 116 (386)
+|+.|+|.+..
T Consensus 83 ~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 KGRAVKISGPS 93 (95)
T ss_dssp TTEEEEEECCC
T ss_pred CCeEEEEeccC
Confidence 99999998654
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.76 E-value=2.6e-08 Score=90.75 Aligned_cols=81 Identities=22% Similarity=0.248 Sum_probs=65.8
Q ss_pred CCCCeEEEcCC-----CCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-----CCceEEEEEeCChhhHHHHHHhcCCceec
Q 016629 37 DDESSVYVGGL-----PYSANEDSVRKVFDKYGSVVAVKIVNDRST-----RGKCYGFVTFGNPRSAVDAINDMNGRTID 106 (386)
Q Consensus 37 ~~~~~lfVgnL-----p~~~te~~L~~~F~~~G~I~~v~i~~~~~~-----~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~ 106 (386)
.....+.+.++ ...-.+++|...|++||.|..|.|+.+..+ +++|++||+|.+.++|.+|+..|||..++
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 33445555444 223456789999999999999999865443 78999999999999999999999999999
Q ss_pred cEEEEEEeecc
Q 016629 107 GRVVRVSEVAT 117 (386)
Q Consensus 107 Gr~L~V~~a~~ 117 (386)
|+.|.|.+...
T Consensus 202 gr~i~~~~~~~ 212 (222)
T 3dxb_A 202 GRKVVAEVYDQ 212 (222)
T ss_dssp SSBCEEEECCH
T ss_pred CeEEEEEEcCH
Confidence 99999998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.15 E-value=8.6e-06 Score=65.29 Aligned_cols=74 Identities=15% Similarity=0.271 Sum_probs=66.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHHhhcC-----CCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 37 DDESSVYVGGLPYSANEDSVRKVFDKY-----GSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~te~~L~~~F~~~-----G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
+...+|-+-|||..++...|+.++..| |.|+.|.+..+.. =|+|+|.+...|.+|.-.|+|..|.|++|+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-----GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-----GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-----EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-----ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 346788888999999999999999999 9999999988754 699999999999999999999999999999
Q ss_pred EEee
Q 016629 112 VSEV 115 (386)
Q Consensus 112 V~~a 115 (386)
|.-.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8643
No 210
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.66 E-value=0.00012 Score=58.23 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=64.4
Q ss_pred CCCCeEEEcCCCCCC-c----HHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEE
Q 016629 37 DDESSVYVGGLPYSA-N----EDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 37 ~~~~~lfVgnLp~~~-t----e~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
+-+++|+|+||+..+ + ...++.+|..|+++....+.+. -.=..|.|.++++|..|-..|++..++|..|+
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 457899999998875 2 2567999999999988776654 22568999999999999999999999999999
Q ss_pred EEeeccc
Q 016629 112 VSEVATR 118 (386)
Q Consensus 112 V~~a~~~ 118 (386)
|-++.+.
T Consensus 78 ~YFgq~~ 84 (104)
T 1wey_A 78 LYFAQTL 84 (104)
T ss_dssp EECCCCS
T ss_pred EEecCCC
Confidence 9998743
No 211
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.08 E-value=0.0013 Score=53.72 Aligned_cols=73 Identities=19% Similarity=0.304 Sum_probs=58.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceecc-EEEEEEe
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDG-RVVRVSE 114 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G-r~L~V~~ 114 (386)
....+.|.|-++|+.. ...+..+|.+||.|....... ...+-.|.|.+..+|++||. .||..|+| -.|-|..
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 3447789999999886 466778899999999887621 33599999999999999999 49999985 5666665
Q ss_pred e
Q 016629 115 V 115 (386)
Q Consensus 115 a 115 (386)
.
T Consensus 94 ~ 94 (119)
T 1wwh_A 94 C 94 (119)
T ss_dssp C
T ss_pred C
Confidence 4
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.88 E-value=0.003 Score=49.54 Aligned_cols=55 Identities=18% Similarity=0.433 Sum_probs=45.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcC
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~ 101 (386)
...++| ++|..+...||..+|+.||.| .|..+.| .-|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 455666 999999999999999999955 4555555 389999999999999999763
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.81 E-value=0.0066 Score=47.22 Aligned_cols=77 Identities=10% Similarity=0.141 Sum_probs=62.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC---CCceEEEEEeCChhhHHHHHHhcCCceecc-----EEEE
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST---RGKCYGFVTFGNPRSAVDAINDMNGRTIDG-----RVVR 111 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~---~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G-----r~L~ 111 (386)
++|.|.+||+.+|++++.+.++.+..+.....+..+.+ ....-|||.|.+.+++......++|+.+-+ .+..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~ 81 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAI 81 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeE
Confidence 47889999999999999999999998887777666544 244679999999999999999999998743 2334
Q ss_pred EEeec
Q 016629 112 VSEVA 116 (386)
Q Consensus 112 V~~a~ 116 (386)
|++|.
T Consensus 82 VE~AP 86 (91)
T 1uw4_A 82 VEFAP 86 (91)
T ss_dssp EEECS
T ss_pred EEEcC
Confidence 56553
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.73 E-value=0.0017 Score=51.12 Aligned_cols=54 Identities=19% Similarity=0.423 Sum_probs=45.1
Q ss_pred CeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcC
Q 016629 40 SSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (386)
Q Consensus 40 ~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~ 101 (386)
..++| ++|..+...+|..+|+.||.| .|..+.| .-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 35566 999999999999999999944 5666665 389999999999999999764
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.71 E-value=0.0084 Score=47.50 Aligned_cols=73 Identities=21% Similarity=0.387 Sum_probs=59.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHHhhc-----CCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEE
Q 016629 36 IDDESSVYVGGLPYSANEDSVRKVFDK-----YGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVV 110 (386)
Q Consensus 36 ~~~~~~lfVgnLp~~~te~~L~~~F~~-----~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L 110 (386)
.....+|.|.|||+.+.++.|.-+|+. =|+|..|.... +-|+|+|.+...|+..++. ..+.|.|..|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 345789999999999999999999987 26788887744 4899999999999999884 4678888888
Q ss_pred EEEeec
Q 016629 111 RVSEVA 116 (386)
Q Consensus 111 ~V~~a~ 116 (386)
.|....
T Consensus 77 sV~P~~ 82 (104)
T 2dhx_A 77 SLRPAP 82 (104)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 886543
No 216
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.24 E-value=0.016 Score=57.92 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=15.4
Q ss_pred EeCChhhHHHHHHhcCCceeccEEEE
Q 016629 86 TFGNPRSAVDAINDMNGRTIDGRVVR 111 (386)
Q Consensus 86 eF~~~~~A~~Ai~~l~g~~i~Gr~L~ 111 (386)
-|........|..+|. .|+|..|.
T Consensus 147 aFV~F~~~e~A~~Ai~--~lng~~i~ 170 (437)
T 3pgw_S 147 AFIEYEHERDMHSAYK--HADGKKID 170 (437)
T ss_pred EEEeeccHHHHHHHHH--HcCCCEEC
Confidence 4556667777777765 46676654
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.07 E-value=0.0081 Score=49.72 Aligned_cols=78 Identities=26% Similarity=0.470 Sum_probs=55.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEE-EEEeeC------------CCC--CCceEEEEEeCChhhHHHHHHhcCC
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVA-VKIVND------------RST--RGKCYGFVTFGNPRSAVDAINDMNG 102 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~-v~i~~~------------~~~--~~kG~aFVeF~~~~~A~~Ai~~l~g 102 (386)
....|.|-|+|+..+.. +.+.|++||.|.. +.+... +.. ....+..|+|.+..+|..||. .||
T Consensus 6 ~e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 35677888998777655 5677999999876 221110 000 024577999999999999999 599
Q ss_pred ceeccEEEEEEeecc
Q 016629 103 RTIDGRVVRVSEVAT 117 (386)
Q Consensus 103 ~~i~Gr~L~V~~a~~ 117 (386)
..|+|.-|-|....+
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999998777876543
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.16 E-value=0.033 Score=43.69 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=56.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCC-C--CceEEEEEeCChhhHHHHHHhcCCceecc-----EEE
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRST-R--GKCYGFVTFGNPRSAVDAINDMNGRTIDG-----RVV 110 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~-~--~kG~aFVeF~~~~~A~~Ai~~l~g~~i~G-----r~L 110 (386)
.-+|.|..||+.+|++++.+.++.+=.+.....+....+ + ...-|||.|.+.++.......++|..+-+ -+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a 88 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPA 88 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeee
Confidence 457899999999999998888777655443333333332 2 23568999999999999999999998743 245
Q ss_pred EEEeec
Q 016629 111 RVSEVA 116 (386)
Q Consensus 111 ~V~~a~ 116 (386)
.|++|.
T Consensus 89 ~VE~AP 94 (97)
T 2l08_A 89 VVEFAP 94 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 566653
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.09 E-value=0.012 Score=58.98 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=43.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHh
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~ 99 (386)
..+|||. +|..+++.+|.++|++||+|..+.+..+. ..||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 4799997 79999999999999999999999887653 36999999999999977654
No 220
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=94.10 E-value=0.033 Score=46.93 Aligned_cols=36 Identities=8% Similarity=-0.013 Sum_probs=28.7
Q ss_pred EEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCce
Q 016629 68 AVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRT 104 (386)
Q Consensus 68 ~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~ 104 (386)
.+.|+.+.. .++|||||+|.+.++|+.|+..+++..
T Consensus 2 ~~kl~ln~~-~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 2 QYKLILNGK-TLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp EEEEEEECS-SCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred cEEEEecCc-cccchhHHHHHHHHhHHHHHHhhcccC
Confidence 355666544 589999999999999999998877543
No 221
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=93.78 E-value=1.6 Score=34.22 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
..-+.++.++-..+...+..+..+..|+++++.||+.+..+..--...+.+|..-++.+. +.-+-..+.++.+|++
T Consensus 23 d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~---~AE~evasLnRriqll 98 (101)
T 3u59_A 23 DRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKAT---DAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 333445555555556666666777777777777777766655544444444443333333 1233344555555554
No 222
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=93.76 E-value=1.4 Score=34.59 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016629 281 RSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (386)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (386)
..+..-+.++..+-..+...+..+..+..|+++++.||+.|..+..--..-+.+|..-++.+. +.-+-..+.++.+|
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~---~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAA---KAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 333444455566666667778888888888888888888888665544444433333333333 22333444555555
Q ss_pred Hh
Q 016629 361 VS 362 (386)
Q Consensus 361 ~~ 362 (386)
+|
T Consensus 97 ll 98 (101)
T 3u1c_A 97 LV 98 (101)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 223
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=93.61 E-value=0.021 Score=47.94 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=36.8
Q ss_pred CCceEEEEEeCChhhHHHHHHhc-CCceeccEEEEEEeeccc
Q 016629 78 RGKCYGFVTFGNPRSAVDAINDM-NGRTIDGRVVRVSEVATR 118 (386)
Q Consensus 78 ~~kG~aFVeF~~~~~A~~Ai~~l-~g~~i~Gr~L~V~~a~~~ 118 (386)
..+|+++|+|.+.++|+.|+..| ||..++| .|.|.++...
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 68899999999999999999999 9999999 9999987653
No 224
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=91.90 E-value=2.1 Score=32.01 Aligned_cols=44 Identities=25% Similarity=0.308 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
++++..+....+..+...++|..+...++.....+..|-+++..
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~ 63 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSES 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444333333333
No 225
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=91.40 E-value=2.6 Score=35.39 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhh
Q 016629 301 NVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368 (386)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (386)
+..+.++..|+.++..++..+..+.++....|..+.-|+-.|..+ .+++...+.|=+-||+-.+.
T Consensus 71 ~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~l---E~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVL---QQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 333477778888889999999999999988888888887777766 66666666666666665443
No 226
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=89.25 E-value=5.9 Score=30.90 Aligned_cols=56 Identities=14% Similarity=0.003 Sum_probs=26.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
.+++.+..|+-+.+........++.+.+.+|.....+..-+..+|++++.|+..|-
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld 61 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRD 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444554444444444444444444444444444444445555554444433
No 227
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=88.68 E-value=0.61 Score=27.68 Aligned_cols=30 Identities=37% Similarity=0.477 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLEEALIN 323 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~ 323 (386)
|-+||++-..+.-+.+||+.+-.||+-+++
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tvqa 31 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETVQA 31 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445666666666666666666666665554
No 228
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=88.40 E-value=7.2 Score=30.31 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
..++.+..+..+.++..+..++|+.+...++.....+..+-+++..|.
T Consensus 21 a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~ 68 (101)
T 3u59_A 21 AIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVK 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555555566666666666666666655555555555555444444
No 229
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=87.66 E-value=5.2 Score=31.29 Aligned_cols=56 Identities=9% Similarity=0.135 Sum_probs=49.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
.+-.+|..+++.+++.+....+++.+..-.-..+...+.....+|.++..|...+-
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999999999999999998888888888888888888888877765
No 230
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.63 E-value=5.5 Score=32.99 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
..++.++++...++.+|..+...+...+.++++-...++.++..|++..
T Consensus 78 ~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~ 126 (138)
T 3hnw_A 78 DSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNI 126 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444443333333333333333333333333
No 231
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=85.76 E-value=11 Score=32.83 Aligned_cols=63 Identities=22% Similarity=0.211 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 016629 299 RVNVKEQLVLDLQKRSKKLEEALINA----KKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQV 361 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (386)
.++..++...+|+.++.+|+..+... ....++.-.+++.|++.+.+++..+..++.-=++|..
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556677777777777775555543 2333333455777777777777766666655544443
No 232
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=85.11 E-value=9.8 Score=28.27 Aligned_cols=70 Identities=16% Similarity=0.106 Sum_probs=42.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (386)
.+++.+..|+-+.+.-......++.+....|.....+..-...+|+++.-|+.-|-.+ .++|...+..|.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~---ee~l~~a~~kLe 72 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKY---SESLKDAQEKLE 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666666666666666666666544 444544444443
No 233
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=84.95 E-value=16 Score=30.77 Aligned_cols=68 Identities=13% Similarity=0.060 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhh
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (386)
++.+..+..+..|..+.+-.|..-..+..-+..+|+.+-.|++.|..- .++.+....+|-.|++.+.+
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~---Kek~~~i~~eLd~tl~el~~ 137 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQ---KLKYKAISEEMKQLEDKVEE 137 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 445666777777888888888888888888889999999999888743 66667777788877766544
No 234
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=84.95 E-value=7.3 Score=32.23 Aligned_cols=42 Identities=10% Similarity=0.033 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
+.....|+.++..++.++...+.-....|.++..+.+.+..+
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l 115 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKEL 115 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443344444444444444433
No 235
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=84.85 E-value=1.6 Score=44.15 Aligned_cols=56 Identities=18% Similarity=0.424 Sum_probs=45.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcC
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMN 101 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~ 101 (386)
.+..++|+ +|..+...+|.+.|+.||.| .|..+.+ ..|||.|.+.+.|..++..+.
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 34566676 99999999999999999965 4444433 389999999999999999885
No 236
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=82.93 E-value=6.6 Score=37.78 Aligned_cols=71 Identities=18% Similarity=0.234 Sum_probs=37.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQ 366 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (386)
.+++..|..|. +.+.++++....+-..+.+...+..++|+++...+..|.|| ++-|..=..-||..|+++
T Consensus 63 r~~~~rIe~L~-------~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~---s~eLe~~i~~lk~~V~~q 132 (390)
T 1deq_A 63 QDFTSRINKLR-------DSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQI---NEDLRSRIEILRRKVIEQ 132 (390)
T ss_pred hhHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 35556665555 55555555555555555555566666666666555555544 444444444444444444
Q ss_pred h
Q 016629 367 L 367 (386)
Q Consensus 367 ~ 367 (386)
|
T Consensus 133 ~ 133 (390)
T 1deq_A 133 V 133 (390)
T ss_pred h
Confidence 3
No 237
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.83 E-value=6.3 Score=39.49 Aligned_cols=23 Identities=9% Similarity=-0.019 Sum_probs=11.5
Q ss_pred HHHHHHhhhhhhhhHhHhhhhhh
Q 016629 347 EYAERLKSCEREFQVSIFNQLSF 369 (386)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~ 369 (386)
..-+.+++-=+.|.+-|+.+|-|
T Consensus 138 snLedq~~kIQRLEvDIdiqirs 160 (562)
T 3ghg_A 138 KNVRAQLVDMKRLEVDIDIKIRS 160 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444445555556555544
No 238
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=82.68 E-value=13 Score=32.34 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=38.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCERE 358 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 358 (386)
....++.+++..+++++....+|+. -||..|..+.+-.++++.++..|...+-.+ .+|+..+..+
T Consensus 21 ~~~q~~~~le~El~EFqesSrELE~---ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~---k~K~~~~~~e 85 (189)
T 2v71_A 21 KYKQSFQEARDELVEFQEGSRELEA---ELEAQLVQAEQRNRDLQADNQRLKYEVEAL---KEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3444555566666666666666553 356666777777777777776666665544 3444444444
No 239
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=82.36 E-value=11 Score=41.73 Aligned_cols=7 Identities=43% Similarity=0.102 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 016629 334 QLTKLYK 340 (386)
Q Consensus 334 ~~~~l~~ 340 (386)
...+|+.
T Consensus 1031 e~~~L~q 1037 (1080)
T 2dfs_A 1031 QNTLLKT 1037 (1080)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 240
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=82.15 E-value=2.9 Score=25.70 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=20.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 293 ISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (386)
.+|+|+++|+.-+...+|++++..|.+.|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 35677777777777777777777665554
No 241
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=82.03 E-value=16 Score=29.64 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=35.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCER 357 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 357 (386)
.++..|.-++..++..+.+...|+..+.-+|..... -..+.|.++..|+.+|.+++..-++..-..+
T Consensus 40 elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq 106 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL---ALKDARNKLAELEEALQKAKQDMARLLREYQ 106 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443333333222 2345677888888888888776666544333
No 242
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=81.10 E-value=15 Score=33.44 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=38.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
.+..+|+.++..+......+.+|+.+...++..+.++..-..+.+.++.+|+..+.++
T Consensus 15 ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~ 72 (256)
T 3na7_A 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDT 72 (256)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666555666666777777777777777777777777777777766666655
No 243
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=80.96 E-value=3.6 Score=31.11 Aligned_cols=30 Identities=10% Similarity=-0.056 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 016629 334 QLTKLYKCFIQVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 334 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (386)
....+.+..-.||+||+-+-.++.=+..+-
T Consensus 36 ~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA 65 (85)
T 3viq_B 36 AKQTVQKHIDLLHTYNEIRDIALGMIGKVA 65 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 345677888889999999999887766543
No 244
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=80.85 E-value=5.8 Score=29.50 Aligned_cols=50 Identities=16% Similarity=0.140 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
+.-+.+|+.++.-.|+.++.....+...|+++.+|+..+-.| .++++..+
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L---~~rl~~~~ 62 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHL---LEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhh
Confidence 356677888888888888888888888888888888877766 66666544
No 245
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=79.62 E-value=4 Score=24.88 Aligned_cols=28 Identities=7% Similarity=0.176 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (386)
+|+|+++|+.-....+|+.++..|.+.|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4566666655555555666555554443
No 246
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=79.34 E-value=4.3 Score=29.57 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 301 NVKEQLVLDLQKRSKKLEEALINA 324 (386)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~~~~~ 324 (386)
+.+++.+.+|+.++..||......
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778888888888777655543
No 247
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=79.23 E-value=10 Score=24.30 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
+..|++++..||.+-+..+|........+.-|++.+.
T Consensus 5 vaqlenevaslenenetlkkknlhkkdliaylekeia 41 (49)
T 3he5_A 5 VAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIA 41 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHH
Confidence 3456666666666666666666666566666666665
No 248
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=78.99 E-value=4.3 Score=24.89 Aligned_cols=28 Identities=7% Similarity=0.285 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (386)
+|+|+++|+.-....+|+.++..|.+.|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4566666655555555665555554443
No 249
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=78.49 E-value=15 Score=27.86 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=34.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
-.++-+++=..+ +...+...+++.++..||.+=+..+.-+..+++++..|...|+|+
T Consensus 20 R~rNN~AarrSR-~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 20 RERNNIAVRKSR-DKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 334444444444 333444556666666666666666666667777777777777765
No 250
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=77.98 E-value=6 Score=25.62 Aligned_cols=32 Identities=13% Similarity=0.171 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 310 LQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 310 l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
|..++.++..+.+.+++..+.+|+++..|+.+
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444445555555555555555555543
No 251
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=77.84 E-value=5.6 Score=24.73 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLEEALI 322 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 322 (386)
.|+|+++|+.-....+|+.++..|.+.+.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 45666666655666666666665555443
No 252
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=77.73 E-value=7.7 Score=31.42 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhh
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV-NEYAERLKSCE 356 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~ 356 (386)
.+.-|.=++.-||.++-...+.+++=..+++.|+.+|.+| +||++.+|++.
T Consensus 56 ~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~LfqeYd~~lK~~~ 107 (130)
T 3cl3_D 56 QVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSV 107 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566677777777777777778888888888775 79999999886
No 253
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=77.63 E-value=4.6 Score=29.31 Aligned_cols=68 Identities=15% Similarity=0.282 Sum_probs=43.5
Q ss_pred eEEEc-CCCCCCcHHHHHHHhhcCC-----CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCceeccEEEEEEe
Q 016629 41 SVYVG-GLPYSANEDSVRKVFDKYG-----SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGRTIDGRVVRVSE 114 (386)
Q Consensus 41 ~lfVg-nLp~~~te~~L~~~F~~~G-----~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~~i~Gr~L~V~~ 114 (386)
+|||. +--..+...+|..++..-+ .|-.|.|..+ |.||+-.. ..|..++..|++..+.|+.+.|+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~-------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~ 73 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN-------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNK 73 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS-------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC-------cEEEEECH-HHHHHHHHHhccccCcCceEEEEE
Confidence 45663 2233467777777776554 4566777554 89999874 668889999999999999998876
Q ss_pred ec
Q 016629 115 VA 116 (386)
Q Consensus 115 a~ 116 (386)
+.
T Consensus 74 ~~ 75 (76)
T 2g0c_A 74 AN 75 (76)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 254
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=77.45 E-value=5.1 Score=24.43 Aligned_cols=25 Identities=4% Similarity=0.177 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLE 318 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e 318 (386)
.|+|+++|+.-....+|+.++..|.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3455555544444444554444443
No 255
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=77.32 E-value=3.3 Score=25.35 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLEEA 320 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (386)
+|+|+++|+.-....+|+.++..|.+.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~L 29 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKL 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456666666555555666655555443
No 256
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=77.27 E-value=28 Score=30.38 Aligned_cols=58 Identities=24% Similarity=0.224 Sum_probs=29.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 285 RREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
....+..++..++..++.....+.++..+...++..+.....-....+..+..+...+
T Consensus 21 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (284)
T 1c1g_A 21 RADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKA 78 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555555555555555555554444444444444333333
No 257
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.17 E-value=23 Score=27.30 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
+...+|+++..+||++..-..+++..---++..|+..+-+|...|.+|+...
T Consensus 37 qEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 37 KEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444455555555677788888888877777776543
No 258
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=77.16 E-value=24 Score=28.58 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=34.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCER 357 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 357 (386)
.++..|.-++..++....+...|+..+.-+|..... -..+.|.++..|+.+|.+++..-++..-..+
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~---~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM---QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444434444444433333333222 2245667788888888888766666544333
No 259
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=77.03 E-value=37 Score=29.57 Aligned_cols=36 Identities=17% Similarity=0.057 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhhe
Q 016629 335 LTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLSFF 370 (386)
Q Consensus 335 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (386)
+..|...+..+...-..+......+.+-+++++.+|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 281 (284)
T 1c1g_A 246 VTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDM 281 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333334444444445555554443
No 260
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.79 E-value=12 Score=30.26 Aligned_cols=57 Identities=14% Similarity=0.201 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhh
Q 016629 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI-QVNEYAERLKSCEREFQ 360 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 360 (386)
+.++.+|...++.|+-++...+.....+...+..++..+. +|.++.+.+...|.+|+
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~ 92 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQ 92 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445555555666666666555555555555555555542 45555555555554443
No 261
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=76.38 E-value=6.5 Score=34.09 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
++++++.-...+..|+.++..|..+|..+..-...+|.+|..|....-..
T Consensus 11 ~q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~ 60 (190)
T 4emc_A 11 VKQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKEL 60 (190)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34566777777788888888888888888877888887777777766543
No 262
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=76.22 E-value=10 Score=38.01 Aligned_cols=10 Identities=10% Similarity=0.517 Sum_probs=5.4
Q ss_pred HHHHHHhHHH
Q 016629 288 ELKKEISHME 297 (386)
Q Consensus 288 ~~~~~~~~~~ 297 (386)
++.+.|..|.
T Consensus 61 DltkrINELK 70 (562)
T 3ghg_A 61 DFTNRINKLK 70 (562)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 5555555554
No 263
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=76.04 E-value=9.7 Score=31.04 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhh
Q 016629 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI-QVNEYAERLKSCEREFQ 360 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~ 360 (386)
+.++.+|...++.|+-+++..+.....+...+..++..+. +|.++.+.+-..|.+|+
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~ 94 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLA 94 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555443 34455555544444443
No 264
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.81 E-value=10 Score=27.69 Aligned_cols=29 Identities=24% Similarity=0.166 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016629 310 LQKRSKKLEEALINAKKLSSHRQKQLTKL 338 (386)
Q Consensus 310 l~~~~~~~e~~~~~~~~~~~~~~~~~~~l 338 (386)
.+..+..+|.+|..+......+|.++-|+
T Consensus 38 kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 38 RDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444455555555544
No 265
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=75.56 E-value=4.6 Score=24.82 Aligned_cols=26 Identities=4% Similarity=0.194 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLEE 319 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~ 319 (386)
+|+|+++|+.-....+|+.++..|.+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45565555544444455554444433
No 266
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=75.35 E-value=9.3 Score=26.74 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 303 KEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 303 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
+.+.+.+|+.++..|+..-.....-...++.++..|...
T Consensus 20 Kk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 20 RKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666655555444444444444444444433
No 267
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=75.33 E-value=11 Score=26.50 Aligned_cols=41 Identities=20% Similarity=0.150 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 302 VKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
.+.+.+.+|+.++..|+..-.....-...++.++..|...|
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665555444444444555555544444
No 268
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=74.68 E-value=9.6 Score=23.67 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (386)
.|+|+++|+.-....+|+.++..|.+.+
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4455555555555555555555444433
No 269
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=74.45 E-value=8.6 Score=37.59 Aligned_cols=52 Identities=12% Similarity=0.196 Sum_probs=25.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
+|+.+++++++.++...+|+.++++++.++...+..-..-+..-.+||..+.
T Consensus 4 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~ 55 (403)
T 4etp_A 4 KIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQ 55 (403)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555554444433333344445544443
No 270
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=74.43 E-value=6.9 Score=37.14 Aligned_cols=45 Identities=20% Similarity=0.274 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYK 340 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~ 340 (386)
|.+++.+.+..+...+.+++.|+..+...+....+++.++..|+.
T Consensus 10 ~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 10 ILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344455555555555555555444444444444444443
No 271
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=74.24 E-value=34 Score=33.44 Aligned_cols=27 Identities=15% Similarity=0.209 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 316 KLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 316 ~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
+|.+++...+.+.+....++..|+..|
T Consensus 88 kml~~~~~~e~~~~~~~~~i~~l~~~~ 114 (409)
T 1m1j_C 88 KIIEEIIRYENTILAHENTIQQLTDMH 114 (409)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 343333333333333333444444433
No 272
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=74.18 E-value=11 Score=26.72 Aligned_cols=14 Identities=21% Similarity=0.268 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLE 318 (386)
Q Consensus 305 ~~~~~l~~~~~~~e 318 (386)
+...+|..++..|+
T Consensus 37 ~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 37 KKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 273
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=72.29 E-value=56 Score=31.87 Aligned_cols=12 Identities=17% Similarity=0.147 Sum_probs=6.0
Q ss_pred HHHHHHHhHHHH
Q 016629 287 EELKKEISHMEE 298 (386)
Q Consensus 287 ~~~~~~~~~~~~ 298 (386)
..+++.|..||.
T Consensus 34 ~~V~~~l~~LE~ 45 (409)
T 1m1j_C 34 LTTDGELLEIEG 45 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred hcchhHHHHHHH
Confidence 345555555553
No 274
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=71.96 E-value=4.1 Score=24.13 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 315 KKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 315 ~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
+.||+.+-+..-++.++|+.+..|++..
T Consensus 2 srlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 2 SRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888888888888888888754
No 275
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=71.60 E-value=30 Score=26.16 Aligned_cols=45 Identities=18% Similarity=0.288 Sum_probs=23.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQL 335 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~ 335 (386)
+.++-++.-++..+....+|.++.+.||..|.....-...|-+.+
T Consensus 4 n~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i 48 (101)
T 1d7m_A 4 NRLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRL 48 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445544555555566666666666666654444444443333
No 276
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=71.60 E-value=5.6 Score=29.61 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 309 DLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 309 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
+++.++..|+.+=...+.-+..+++.+..|...|+|+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q~ 76 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQL 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3444444444444444444445555555555555543
No 277
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=71.58 E-value=19 Score=26.00 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=18.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSK 315 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~ 315 (386)
+...+..+++.+..|++++..|+..++
T Consensus 16 ~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 16 LLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444677777888888888777765443
No 278
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=71.37 E-value=13 Score=27.58 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 297 EERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
..++++-+....+|+.+++-||..|+..+.-...++..|..|...|.
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666667777888888888877777777777777777666654
No 279
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=70.61 E-value=27 Score=27.48 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=32.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS 328 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 328 (386)
+.|...+...|+-+.+++..+.+|..+..+++..++.-.-|.
T Consensus 27 ~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~lE~I~vLk 68 (110)
T 2v4h_A 27 EDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLK 68 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777888888888899999999999888887776544443
No 280
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=69.55 E-value=29 Score=27.50 Aligned_cols=11 Identities=27% Similarity=0.302 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q 016629 335 LTKLYKCFIQV 345 (386)
Q Consensus 335 ~~~l~~~~~~~ 345 (386)
|..|.++|.|.
T Consensus 61 L~~Lqq~fsq~ 71 (112)
T 1x79_B 61 LEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34444455444
No 281
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=68.99 E-value=11 Score=23.18 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 016629 295 HMEERVNVKEQLVLDLQKRSKKL 317 (386)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~ 317 (386)
|+|+++|+.-....+|+.++..|
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 44444444444444444444433
No 282
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=68.71 E-value=18 Score=27.97 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSS 329 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~ 329 (386)
..+.+.++++|.+++.+||.....++.|..
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~aK~LRn 78 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNNSKLLRN 78 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344556778888888888888888887754
No 283
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=68.36 E-value=14 Score=28.37 Aligned_cols=71 Identities=17% Similarity=0.303 Sum_probs=46.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhh
Q 016629 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS-SHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLSF 369 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (386)
-|..+|+++..-++.+++|+..+..+... ..++ ..+.+-+.++|+.|+-| ++++-+.-.+++.+-..-|.|
T Consensus 13 lv~~fe~rL~~Yr~~IeelE~~L~s~s~~----~~~Tpq~L~~~l~~~h~~FiaL---Aa~l~~lH~~V~~~Ke~Yl~~ 84 (93)
T 3t98_B 13 LVQQFEVQLQQYRQQIEELENHLATQANN----SHITPQDLSMAMQKIYQTFVAL---AAQLQSIHENVKVLKEQYLSY 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHH----TTSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777776654321 1111 45668888899999877 777777777776666555543
No 284
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=68.03 E-value=53 Score=27.82 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=26.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKL 338 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l 338 (386)
.=|.++.+++-..++.+.+..+.+..=...|+.+.+--.+.++++.|+
T Consensus 78 ~yI~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKf 125 (169)
T 3k29_A 78 AYIKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKT 125 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555555555555555
No 285
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=68.00 E-value=17 Score=25.69 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 303 KEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 303 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
+.+...+|+.++..|+..-...+.-.+.+++.+.-|...|.
T Consensus 21 Kk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455556666665555555555555555555555544443
No 286
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=67.96 E-value=27 Score=25.41 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
.++++-+....+|+.+++-||..|+..+.-...++..++.|...|.
T Consensus 7 ~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 7 MKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555666677777777777777777666666667766666654
No 287
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=67.88 E-value=7.7 Score=23.83 Aligned_cols=24 Identities=4% Similarity=0.094 Sum_probs=11.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKL 317 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~ 317 (386)
+|+|+++|+.-....+|+.++..|
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHH
Confidence 345544444444444444444443
No 288
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=67.87 E-value=17 Score=25.63 Aligned_cols=58 Identities=19% Similarity=0.155 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhheeeee
Q 016629 316 KLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLSFFLHYH 374 (386)
Q Consensus 316 ~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (386)
.+|.=-++|.+--.-.+.....|+..+.+|...|+.|+..-..|+.-+. .|+++|..|
T Consensus 6 rrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~-~Lk~~l~~H 63 (63)
T 2wt7_A 6 RRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKE-KLEFILAAH 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhC
Confidence 3444444555555555555666666666666666666665555555554 355555444
No 289
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=66.44 E-value=91 Score=30.92 Aligned_cols=10 Identities=10% Similarity=0.315 Sum_probs=3.9
Q ss_pred HHHHHHhHHH
Q 016629 288 ELKKEISHME 297 (386)
Q Consensus 288 ~~~~~~~~~~ 297 (386)
.+++.|.+|+
T Consensus 97 ~V~~~LqeLe 106 (464)
T 1m1j_B 97 TVKPVLRDLK 106 (464)
T ss_dssp HHHHHHHHHH
T ss_pred hhHhHHHHHH
Confidence 3333343333
No 290
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=65.99 E-value=56 Score=27.08 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016629 299 RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCE 356 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (386)
..++......+...++..+|+.|..+..-.-.-..++..|+..|-.| .+.||+.|
T Consensus 67 ~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~---~~nlKsLE 121 (147)
T 2b9c_A 67 IAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTV---TNNLKSLE 121 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhH
Confidence 34444455556666777777777776666666666777777777766 66666654
No 291
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=65.65 E-value=63 Score=27.47 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016629 334 QLTKLYKCFIQVNEYAERLKSCEREFQ 360 (386)
Q Consensus 334 ~~~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (386)
.+.-|+..+-.++..-.++..-.++|+
T Consensus 98 ri~~L~~El~~~k~~~~k~~~e~r~L~ 124 (168)
T 3o0z_A 98 RITSLQEEVKHLKHNLEKVEGERKEAQ 124 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444443333333333333
No 292
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=65.50 E-value=74 Score=31.58 Aligned_cols=17 Identities=12% Similarity=0.433 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhHHH
Q 016629 278 ELDRSIQRREELKKEISHME 297 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~ 297 (386)
..+++++ +|+..+..|+
T Consensus 97 ~V~~~Lq---eLe~~l~~ls 113 (464)
T 1m1j_B 97 TVKPVLR---DLKDRVAKFS 113 (464)
T ss_dssp HHHHHHH---HHHHHHHHHH
T ss_pred hhHhHHH---HHHHHHHHHh
Confidence 3445555 4555554444
No 293
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=65.02 E-value=57 Score=26.83 Aligned_cols=29 Identities=17% Similarity=0.145 Sum_probs=21.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016629 322 INAKKLSSHRQKQLTKLYKCFIQVNEYAE 350 (386)
Q Consensus 322 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 350 (386)
-..+.|..+++.-+.|+...|..|.-|++
T Consensus 103 ~~QedL~~DL~eDL~ka~etf~lVeq~~~ 131 (141)
T 3okq_A 103 TLQEELILDLKEDLGKALETFDLIKLCCE 131 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888877653
No 294
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=64.71 E-value=20 Score=34.99 Aligned_cols=53 Identities=23% Similarity=0.369 Sum_probs=35.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYK 340 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~ 340 (386)
.++.+|..+++++++.++.+++++.+...|++.+...+.+...+..++..|..
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 55666666667777777777777777777777777777666666666665543
No 295
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=64.10 E-value=48 Score=25.63 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 327 LSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 327 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
+....+.++..|...|..+ .+.+...+.+++.+
T Consensus 65 ~i~~~~~~l~~l~~~i~~l---~~~i~~l~~~~~~l 97 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKL---IDRKSELERELRRI 97 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4445556666666666655 34444444444433
No 296
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=63.28 E-value=16 Score=24.53 Aligned_cols=30 Identities=23% Similarity=0.379 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHH--HHHHHhhhhhhhhHh
Q 016629 333 KQLTKLYKCFIQVNE--YAERLKSCEREFQVS 362 (386)
Q Consensus 333 ~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~ 362 (386)
..+..|++.|..+++ |.+||...+++|+-+
T Consensus 13 d~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 13 SEMLDLEKQFSELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677777777766 788888888888754
No 297
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=63.12 E-value=66 Score=26.84 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=9.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q 016629 293 ISHMEERVNVKEQLVLDLQKRSK 315 (386)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~ 315 (386)
|..+++.+++|.+.+..|+.+..
T Consensus 84 i~dLeeel~eK~K~~e~l~DEl~ 106 (152)
T 3a7p_A 84 IRRLKEVIALKNKNTERLNAALI 106 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444
No 298
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=62.87 E-value=61 Score=31.15 Aligned_cols=11 Identities=27% Similarity=0.679 Sum_probs=5.4
Q ss_pred hhhhhhhhHhH
Q 016629 353 KSCEREFQVSI 363 (386)
Q Consensus 353 ~~~~~~~~~~~ 363 (386)
.+|.+.|..-|
T Consensus 166 ~sC~~~l~~~v 176 (390)
T 1deq_A 166 GSCSRALEHKV 176 (390)
T ss_pred cccchhhhhhc
Confidence 34555555443
No 299
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=62.65 E-value=42 Score=24.50 Aligned_cols=46 Identities=26% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ 344 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (386)
+||+++..+..+.-||.++.+|=.+....++.- ..-+++||..+..
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KL---KqRit~LE~~~~~ 50 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKL---KQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcc
Confidence 567777778888889999888755555444332 2345677765554
No 300
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=61.88 E-value=19 Score=26.69 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
-.+..++.-+..|-+.+....+....+|.++.-|.+-|.
T Consensus 21 ~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 21 TRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444444444444444444333
No 301
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=61.64 E-value=17 Score=22.29 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 315 KKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 315 ~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
.|||+.+++.-.-.++++.+|..|.+.
T Consensus 4 nQLEdkVEeLl~~~~~Le~eV~RL~~l 30 (34)
T 2hy6_A 4 KQLADAVEELASANYHLANAVARLAKA 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 344555544444445555555555544
No 302
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=61.44 E-value=31 Score=24.05 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016629 303 KEQLVLDLQKRSKKLEEA 320 (386)
Q Consensus 303 ~~~~~~~l~~~~~~~e~~ 320 (386)
+.+.+.+|+.++..|+.+
T Consensus 20 Kk~~~~~Le~~v~~L~~~ 37 (62)
T 1jnm_A 20 KLERIARLEEKVKTLKAQ 37 (62)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555555544443
No 303
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=60.54 E-value=28 Score=26.36 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=24.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 016629 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQK 333 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~ 333 (386)
....++.+++..+++...|..++.+|+.++...+.+..++.-
T Consensus 37 r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~ 78 (87)
T 1hjb_A 37 RNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcH
Confidence 334445556666666666777777776666666666655444
No 304
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=60.53 E-value=24 Score=24.50 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=19.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 292 EISHMEERVNVKEQLVLDLQKRSKKLEEALINAKK 326 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 326 (386)
.+..|+.+++..+....+|+.++..|+.++...+.
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555556666666666666655554443
No 305
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=59.97 E-value=85 Score=28.19 Aligned_cols=10 Identities=10% Similarity=0.248 Sum_probs=4.1
Q ss_pred hhHHHHHHHH
Q 016629 274 DQVKELDRSI 283 (386)
Q Consensus 274 ~~~~~~~~~~ 283 (386)
+.+..+.++|
T Consensus 90 kE~~aL~kEi 99 (256)
T 3na7_A 90 RELRSLNIEE 99 (256)
T ss_dssp SHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 306
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=59.89 E-value=43 Score=32.75 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=11.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHH
Q 016629 324 AKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
++.....+|++|+.+++-|.|+
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~ 416 (471)
T 3mq9_A 395 ARNVTHLLQQELTEAQKGFQDV 416 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhhHHHH
Confidence 3344455555555555555555
No 307
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=59.65 E-value=20 Score=21.87 Aligned_cols=21 Identities=5% Similarity=0.030 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016629 304 EQLVLDLQKRSKKLEEALINA 324 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~ 324 (386)
+..+++|..+...||++++-.
T Consensus 6 EdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHH
Confidence 344444444444444444433
No 308
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=59.35 E-value=25 Score=34.38 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
|++.+++..+.+.+|+.+.++++.++...+..--+-+..-.+||..+.
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~ 55 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVM 55 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555555555555544444443332333344455555544
No 309
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=59.03 E-value=20 Score=22.01 Aligned_cols=12 Identities=0% Similarity=0.041 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 016629 309 DLQKRSKKLEEA 320 (386)
Q Consensus 309 ~l~~~~~~~e~~ 320 (386)
+|.++...++++
T Consensus 12 el~~~~~~l~nE 23 (34)
T 2r2v_A 12 EVASKLYHNANE 23 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHhHHHHHH
Confidence 333333333333
No 310
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=58.98 E-value=21 Score=21.89 Aligned_cols=25 Identities=0% Similarity=0.119 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 295 HMEERVNVKEQLVLDLQKRSKKLEE 319 (386)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~e~ 319 (386)
|+++++|+.-....+|++++..|-+
T Consensus 5 QledKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444444444555555555554443
No 311
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=58.92 E-value=65 Score=39.84 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=8.0
Q ss_pred HHHHHHHhhhhhhhhH
Q 016629 346 NEYAERLKSCEREFQV 361 (386)
Q Consensus 346 ~~~~~~~~~~~~~~~~ 361 (386)
.+.++++..||.+|..
T Consensus 1990 ~ei~~~k~~~e~dL~~ 2005 (3245)
T 3vkg_A 1990 KEIAVQKVKAYADLEK 2005 (3245)
T ss_dssp HHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3445556666666543
No 312
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.39 E-value=20 Score=22.23 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 315 KKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 315 ~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
.|||+.+++.-.-.++++.+|..|...+
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3455555555555555555556665544
No 313
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=58.36 E-value=32 Score=22.14 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 295 HMEERVNVKEQLVLDLQKRSKKLEEA 320 (386)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (386)
.+|.+..+.+....||+.+++.|+.+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444455555555555555443
No 314
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=58.19 E-value=48 Score=26.38 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=26.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKL-------SSHRQKQLTKLYKCFI 343 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~-------~~~~~~~~~~l~~~~~ 343 (386)
.+.-+|..+...++..+..-.+....-+.+|..+...+|. ..+++.++.-|.+.+.
T Consensus 38 ~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 38 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444445555555555444 3445555555555444
No 315
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=57.94 E-value=56 Score=36.34 Aligned_cols=19 Identities=21% Similarity=0.469 Sum_probs=9.7
Q ss_pred CCCCCcHHHHHHHhhcCCC
Q 016629 47 LPYSANEDSVRKVFDKYGS 65 (386)
Q Consensus 47 Lp~~~te~~L~~~F~~~G~ 65 (386)
+|..++..-+..++..+|.
T Consensus 546 ~p~~td~~~~~kl~~~~~~ 564 (1184)
T 1i84_S 546 FPKATDTSFVEKLIQEQGN 564 (1184)
T ss_dssp CTTCCHHHHHHHHHHHTSS
T ss_pred CCCCChHHHHHHHHHHhCC
Confidence 3444444555555555553
No 316
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=56.57 E-value=47 Score=23.08 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 353 (386)
.|+.+....-|-.++..-|+...+...+..|++.+..++.+|.-|+
T Consensus 16 levK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 16 LELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence 3444444444555555556666666777777777777777766554
No 317
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=55.67 E-value=91 Score=26.10 Aligned_cols=69 Identities=19% Similarity=0.231 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 284 QRREELKKEISHMEER-------VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSC 355 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 355 (386)
+..+..+.+|-.+.++ .+.-+..+.-|++.+-.||+.|...+......+. .|...|..|..+.+++--.
T Consensus 70 qrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~---eLd~tl~el~~~~~~~~~~ 145 (155)
T 2efr_A 70 QKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISE---EMKQLEDKVEELLSKNYHL 145 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhcccchHHH
Confidence 4445555556555544 4444456666777777777777766555544443 3445555555544444333
No 318
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=55.49 E-value=39 Score=21.81 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
+.+..|.+...+||.-.++.+|...-+...+..|+..+
T Consensus 10 kkiarlkkdnlqlerdeqnlekiianlrdeiarlenev 47 (52)
T 3he5_B 10 KKIARLKKDNLQLERDEQNLEKIIANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 34455666666677666666666666666666555443
No 319
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=54.27 E-value=80 Score=25.06 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 315 KKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 315 ~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
+.++.+.+..++..++-|+++.+|++.+..|
T Consensus 53 qTV~tL~~SL~~ekaq~q~~vqeLqgEI~~L 83 (121)
T 3mq7_A 53 HTVMALMASLDAEKAQGQKKVEELEGEITTL 83 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444455555555555444
No 320
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=53.73 E-value=12 Score=27.89 Aligned_cols=20 Identities=5% Similarity=0.242 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016629 306 LVLDLQKRSKKLEEALINAK 325 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~ 325 (386)
.+..|+.+++.|+.++...+
T Consensus 48 YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444333333
No 321
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=53.57 E-value=39 Score=27.96 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=34.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (386)
+|++-++....-++.++++...|-.+++ ..+.++....--.-+.+.++-.+=.-+++|..|+..+|.+|.
T Consensus 24 qL~nrla~~~am~~sqqq~~eqlS~eFq---tal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 24 QLESRLAVWQAMIESQKEMGIQVSKEFQ---TALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC--CCTHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555556666666655555555 333333333333334444444444445555555555555543
No 322
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=53.47 E-value=39 Score=24.96 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 016629 294 SHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSH 330 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 330 (386)
..++.+++..+++...|..++.+|+.++...+.+..+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666667777777777776666655443
No 323
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=52.85 E-value=88 Score=30.81 Aligned_cols=30 Identities=7% Similarity=0.002 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhHhHhhhhhh
Q 016629 340 KCFIQVNEYAERLKSCEREFQVSIFNQLSF 369 (386)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (386)
..|..|+..-+.+++-=+.|.+.|+.++.|
T Consensus 132 ~~IrvLq~~l~~q~skIQRLE~dI~~q~~~ 161 (491)
T 1m1j_A 132 NRIKALQNSIQEQVVEMKRLEVDIDIKIRA 161 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555566666666666666554
No 324
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=52.76 E-value=77 Score=24.38 Aligned_cols=58 Identities=10% Similarity=0.123 Sum_probs=31.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSK------------KLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
-|...|..|+.+++.+.+...-|.+=.. .+|.+|..+.+..-.++..+.||+..|..|
T Consensus 19 kL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 19 RLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444444444433222 235666666666666666667776666654
No 325
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=52.49 E-value=85 Score=24.81 Aligned_cols=46 Identities=20% Similarity=0.114 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHH
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ----KQLTKLYKCFIQV 345 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 345 (386)
-++=...+.+|...++.-|..|....+-.++-| .++.+|-..--+|
T Consensus 40 ~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq~qL~~Lt~~Re~V 89 (112)
T 1x79_B 40 SEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQMAVLMQSREQV 89 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555555555555555554444 3444444444444
No 326
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=52.37 E-value=31 Score=22.26 Aligned_cols=24 Identities=29% Similarity=0.542 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 297 EERVNVKEQLVLDLQKRSKKLEEA 320 (386)
Q Consensus 297 ~~~~~~~~~~~~~l~~~~~~~e~~ 320 (386)
.-.++.-++.+.+||++...||+.
T Consensus 15 drEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 15 DREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455567788888888888764
No 327
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=52.19 E-value=27 Score=21.33 Aligned_cols=27 Identities=11% Similarity=0.015 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKK 326 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~ 326 (386)
+...+..+++|..+.+.||++++-.+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344444555555555555555544443
No 328
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=52.07 E-value=52 Score=24.62 Aligned_cols=55 Identities=9% Similarity=0.107 Sum_probs=25.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS-------SHRQKQLTKLYKCF 342 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~-------~~~~~~~~~l~~~~ 342 (386)
.+..++..+...++..+..-.+....-+.+|..+...+|.. .+++.++.-|.+.+
T Consensus 18 ~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 18 RVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554444444444444444444444444444443 44444444444443
No 329
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=51.91 E-value=52 Score=22.21 Aligned_cols=40 Identities=23% Similarity=0.278 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016629 299 RVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKL 338 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l 338 (386)
++.+.+..+..|..++.+|++.|..+..-...+..+|.+|
T Consensus 10 r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 10 DIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444456667777778888777777765555444444443
No 330
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=51.73 E-value=87 Score=24.71 Aligned_cols=30 Identities=17% Similarity=0.193 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 314 SKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 314 ~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
...|+.++.....-.-..++++.+|+..=.
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~ND 66 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQAND 66 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 333445555555555555555555554433
No 331
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.26 E-value=1.2e+02 Score=37.57 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 016629 310 LQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ 344 (386)
Q Consensus 310 l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (386)
++.+..+.+..|.+++....+.+.++.+|+..|..
T Consensus 2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2019 LENAANELKLKQDEIVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444555555554443
No 332
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=51.19 E-value=31 Score=19.95 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016629 304 EQLVLDLQKRSKKLEEALINA 324 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~ 324 (386)
++.+..|+.+.|.||..|++.
T Consensus 7 ekkcaalesklqalekkleal 27 (31)
T 3ljm_A 7 EKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666655543
No 333
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=51.09 E-value=18 Score=22.45 Aligned_cols=27 Identities=30% Similarity=0.238 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 336 TKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
.|||+.+-|-.+.-++|++.+.+|+-+
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~El 36 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELAEV 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence 578888888888888888888888743
No 334
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=50.67 E-value=42 Score=32.75 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=34.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYK 340 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~ 340 (386)
+.|+.++..+++++++.+..+++++.+...++++|.....+...+..+++.|.+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 456666666666667777777777777777777766666555555555555543
No 335
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=49.89 E-value=76 Score=23.51 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 318 EEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 318 e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
+..|..+++...+++-.+.+|.+.+-
T Consensus 44 eskL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 44 ASQLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444443
No 336
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=49.30 E-value=35 Score=20.02 Aligned_cols=14 Identities=21% Similarity=0.264 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLE 318 (386)
Q Consensus 305 ~~~~~l~~~~~~~e 318 (386)
.+...|+.++.+||
T Consensus 15 aenyqleqevaqle 28 (33)
T 1fmh_A 15 AENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHH
Confidence 44444555555544
No 337
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=48.28 E-value=29 Score=21.30 Aligned_cols=28 Identities=18% Similarity=0.267 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKKL 327 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~ 327 (386)
+...+..+++|-.+.+.|+++++-.+.|
T Consensus 3 MnQLEdKvEeLl~~~~~L~~EV~RLk~l 30 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHICNELARIKKL 30 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 3444455555555555555555544443
No 338
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=47.88 E-value=2.2e+02 Score=28.18 Aligned_cols=64 Identities=22% Similarity=0.210 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
.+++--|..++-+.+|+.++..+...+.++..+-.+.++.++.|.++.+--....+++..+.+-
T Consensus 350 e~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~K 413 (602)
T 1cii_A 350 EWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQK 413 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 3444457778888999999999999888888888888888888887766555555666555554
No 339
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=46.96 E-value=76 Score=24.56 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhh
Q 016629 336 TKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368 (386)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (386)
...+....-++.|..+|...|+++++|.+..+.
T Consensus 58 ~lyeeG~~L~k~C~~~L~~AE~kV~~L~~~~~~ 90 (100)
T 1vp7_A 58 SAYRRGVELARVCQDRLAQAEQQVKVLEGDLLR 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 344555666788888888888888888655443
No 340
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=46.62 E-value=87 Score=23.25 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=28.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQ 344 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (386)
|+..|.++=+-+.-.+.++.+|..+...|..+.++++.-...+..+..+|+.....
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~ 66 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNG 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 33333333334444445666666666666665555554444444444555544443
No 341
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=46.25 E-value=44 Score=29.97 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=26.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKK 326 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~ 326 (386)
++.+..||.+++++++-.|.....++.++++|+.|.....
T Consensus 9 d~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 9 DQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677777777777777777777777777665554443
No 342
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=46.22 E-value=78 Score=23.67 Aligned_cols=8 Identities=0% Similarity=0.131 Sum_probs=3.2
Q ss_pred hHHHHHHH
Q 016629 275 QVKELDRS 282 (386)
Q Consensus 275 ~~~~~~~~ 282 (386)
.....+.+
T Consensus 21 aFgKrEaA 28 (84)
T 1gmj_A 21 AFGKREQA 28 (84)
T ss_dssp HHHHHHHH
T ss_pred CcccHHHH
Confidence 33344443
No 343
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.12 E-value=1.3e+02 Score=25.12 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 016629 331 RQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (386)
+.+.-..|++.=..|=+.+++....++.-+..+
T Consensus 81 ~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~ 113 (154)
T 2ocy_A 81 ADKLNKEVEDLTASLFDEANNMVADARKEKYAI 113 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555666666666655544443
No 344
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=45.65 E-value=1.1e+02 Score=23.95 Aligned_cols=24 Identities=13% Similarity=-0.028 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhh
Q 016629 335 LTKLYKCFIQVNEYAERLKSCERE 358 (386)
Q Consensus 335 ~~~l~~~~~~~~~~~~~~~~~~~~ 358 (386)
|..|...+-.+...+..+.+.--.
T Consensus 70 l~~lq~~l~~~~~~~~~l~~~~~~ 93 (107)
T 2no2_A 70 LQVLQGSLETSAQSEANWAAEFAE 93 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333555555444444444443333
No 345
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=45.59 E-value=74 Score=24.72 Aligned_cols=70 Identities=13% Similarity=0.277 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhheee
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQ---KQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLSFFLH 372 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (386)
+|+++|+---.+.-+++++..+|+.+.++.-|+--+. .+-++-...||.+ -+.++-+-++--..+.|||+
T Consensus 4 iedkieeilskiyhieneiar~~gl~~nqn~LicgLRqLANeTtqaLqLfLRa-------TTElRTfsilNRkAIDFLL~ 76 (131)
T 1ebo_A 4 IEDKIEEILSKIYHIENEIARIKKLIGEADGLIEGLRQLANETTQALQLFLRA-------TTELRTFSILNRKAIDFLLQ 76 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHH
Confidence 4545555455566667777777777777666654332 3444545555533 33444455555556677764
No 346
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=45.38 E-value=38 Score=32.02 Aligned_cols=30 Identities=7% Similarity=0.071 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAK 325 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (386)
+|..+..++..+..|+..+..++..++..+
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~ 46 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQ 46 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444333333333333
No 347
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=45.36 E-value=32 Score=20.99 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 302 VKEQLVLDLQKRSKKLEEALINAKKLS 328 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~e~~~~~~~~~~ 328 (386)
..+..+++|..+...||++++-.+.|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 345556666666666666665554443
No 348
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=44.94 E-value=50 Score=20.48 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 315 KKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 315 ~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
.|||+.+++.-.--++++.+|..|...+-
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 34555555555555555555555555443
No 349
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=44.88 E-value=76 Score=23.66 Aligned_cols=29 Identities=28% Similarity=0.167 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHhHh
Q 016629 336 TKLYKCFIQVNEYAERLKSCEREFQVSIF 364 (386)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (386)
.+|++.+-++++..+.++....+|+.|+.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666666666654
No 350
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.73 E-value=75 Score=21.98 Aligned_cols=41 Identities=15% Similarity=0.164 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhheeeee
Q 016629 333 KQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLSFFLHYH 374 (386)
Q Consensus 333 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (386)
..+..|+..+..|...|+.|...=..|+.-|. .|+.+|..|
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~-~Lk~~l~~H 62 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA-QLKQKVMNH 62 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhC
Confidence 33444444444444444444444444444432 455555555
No 351
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=44.73 E-value=33 Score=21.02 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016629 301 NVKEQLVLDLQKRSKKLEEALINAKKL 327 (386)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~~~~~~~~ 327 (386)
...+..+++|..+...||++++-.+.|
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~L 30 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 444555666666666666666655544
No 352
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=44.24 E-value=28 Score=26.69 Aligned_cols=17 Identities=6% Similarity=0.007 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016629 307 VLDLQKRSKKLEEALIN 323 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~ 323 (386)
...++..+..||.++..
T Consensus 39 ~~~~q~~i~~lE~eL~~ 55 (95)
T 3mov_A 39 KDNSRRMLTDKEREMAE 55 (95)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444445444443
No 353
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=43.85 E-value=1.2e+02 Score=24.15 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKKL 327 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~ 327 (386)
..+.+..+..|...+..||.+|+.+.++
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888766
No 354
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=43.25 E-value=1e+02 Score=23.16 Aligned_cols=52 Identities=17% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh----------HHHHHHHHHHHHHHHHH
Q 016629 295 HMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSS----------HRQKQLTKLYKCFIQVN 346 (386)
Q Consensus 295 ~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~ 346 (386)
.++..+++-+....++......++.....+..|.. ..+.++..|...+..|.
T Consensus 37 ~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~ 98 (119)
T 3uun_A 37 VVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLR 98 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555555555555422 24556666666666553
No 355
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=43.19 E-value=59 Score=21.95 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016629 304 EQLVLDLQKRSKKLEEALIN 323 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~ 323 (386)
+..+..||+.+-.||+.|..
T Consensus 11 ERsV~KLek~ID~LEdeL~~ 30 (52)
T 2z5i_A 11 ENEVARLKKLVDDLEDELYA 30 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555554443
No 356
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=42.34 E-value=49 Score=20.12 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016629 304 EQLVLDLQKRSKKLEEALINA 324 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~ 324 (386)
+..+++|..+.+.||++++-.
T Consensus 6 EdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHH
Confidence 334444444444444444433
No 357
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=42.21 E-value=65 Score=20.52 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 016629 309 DLQKRSKKLEEALINAKKLSSHRQKQLTKLYK 340 (386)
Q Consensus 309 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~ 340 (386)
.|+++...|...-.-++.|..++.|.+..|.+
T Consensus 14 slenenetlkkknlhkkdliaylekeianlrk 45 (49)
T 3he5_A 14 SLENENETLKKKNLHKKDLIAYLEKEIANLRK 45 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 33344444433344445555555555555544
No 358
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=41.60 E-value=1.1e+02 Score=30.35 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhh
Q 016629 338 LYKCFIQVNEYAERLKSCEREFQVSIFNQLSF 369 (386)
Q Consensus 338 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (386)
.+..|-+|++--+.+.+-=+.|+..|..+..+
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444444444455555555555555555444
No 359
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=41.03 E-value=39 Score=27.66 Aligned_cols=34 Identities=15% Similarity=-0.013 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHh
Q 016629 331 RQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIF 364 (386)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (386)
+.+.-..|++.=..|=+.+++....++.-+..+.
T Consensus 69 ~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e 102 (135)
T 2e7s_A 69 ADKLNKEVEDLTASLFDEANNLVADARMEKYAIE 102 (135)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666777777777665554443
No 360
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=40.92 E-value=73 Score=23.56 Aligned_cols=29 Identities=10% Similarity=0.115 Sum_probs=11.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (386)
|+..|.-++.+++.-+....-++.+++++
T Consensus 25 Le~~v~~le~~Le~s~~~q~~~~~Elk~l 53 (79)
T 3cvf_A 25 LEHQLRAMERSLEEARAERERARAEVGRA 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333333333333333333
No 361
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=40.80 E-value=34 Score=25.72 Aligned_cols=20 Identities=20% Similarity=0.127 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEALINA 324 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~ 324 (386)
.-+..|+.+.+.++..+...
T Consensus 52 ~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 52 AYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555544444433
No 362
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=40.18 E-value=32 Score=31.19 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016629 336 TKLYKCFIQVNEYAERL 352 (386)
Q Consensus 336 ~~l~~~~~~~~~~~~~~ 352 (386)
+.|.+.+.++++..++|
T Consensus 78 k~ar~El~~LkeElerL 94 (251)
T 3m9b_A 78 KEARQQLLALREEVDRL 94 (251)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333444443333333
No 363
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=38.79 E-value=1.8e+02 Score=24.60 Aligned_cols=40 Identities=18% Similarity=0.284 Sum_probs=19.0
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhHhH
Q 016629 324 AKKLSSHRQKQLTKLYKCFIQVN-EYAERLKSCEREFQVSI 363 (386)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~ 363 (386)
+.+.....++++..++.-|.+|. +.-.+.|.+..++|++|
T Consensus 122 Ads~~~~lekKvn~aq~kLs~L~P~dP~Y~K~~~~~~~~~~ 162 (201)
T 3u0c_A 122 ADSKIKDLENKINQIQTRLSELDPESPEKKKLSREEIQLTI 162 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCSSCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCccccccHHHHhhhh
Confidence 34444445555555555554443 12234455555555555
No 364
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=38.70 E-value=1.2e+02 Score=22.63 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=24.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (386)
.++.++..+++.++..+....+|+.+..+|....
T Consensus 18 ~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek 51 (89)
T 3bas_A 18 EQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQK 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777878777788888887777665443
No 365
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=38.33 E-value=1.3e+02 Score=22.88 Aligned_cols=53 Identities=13% Similarity=0.204 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016629 304 EQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (386)
+++...|..++..++.++.....-.....+..+.+.-.++++ .+.+.|.+.++
T Consensus 31 Eke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~---~dE~~Sl~~q~ 83 (96)
T 3q8t_A 31 EKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLEL---DDELKSVENQM 83 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 333333333333333333333333333333344444333322 33444444443
No 366
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=38.26 E-value=56 Score=27.90 Aligned_cols=46 Identities=9% Similarity=0.112 Sum_probs=30.6
Q ss_pred CcHHHHHHHh--hcCCCeEEEEEeeCCCCCCceEEEEEeCC-hhhHHHHHH
Q 016629 51 ANEDSVRKVF--DKYGSVVAVKIVNDRSTRGKCYGFVTFGN-PRSAVDAIN 98 (386)
Q Consensus 51 ~te~~L~~~F--~~~G~I~~v~i~~~~~~~~kG~aFVeF~~-~~~A~~Ai~ 98 (386)
.....|.+.| ..|.++. |..+.++.+ ..|+|.|.|.. -.-...|+.
T Consensus 33 ~s~~~l~~~~~~~~F~p~k-v~~l~~~~G-h~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 33 ESGSKLRDEYILRGFNPTR-VRPLWNYLG-HSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CCSHHHHHHHHHTTCCCSE-EEEEECSSB-EEEEEEEECCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCCce-eEecccCCC-CceeEEEEecCChHHHHHHHH
Confidence 3457889977 9999876 444444444 67899999984 334445544
No 367
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=38.18 E-value=55 Score=30.66 Aligned_cols=52 Identities=23% Similarity=0.220 Sum_probs=32.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
.+++.+...+.+++..+.+..+|++++..||.+.+++++-..++ +.+|++++
T Consensus 175 ~~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~r---l~~Lqk~~ 226 (315)
T 2ve7_A 175 KLKDLFNVDAFKLESLEAKNRALNEQIARLEQERSTANKANAER---LKRLQKSA 226 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH---HHHHHHHH
Confidence 34444444455777888888888888888888777777642222 44444444
No 368
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=37.98 E-value=1.4e+02 Score=23.17 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 016629 314 SKKLEEAL 321 (386)
Q Consensus 314 ~~~~e~~~ 321 (386)
.|||+++.
T Consensus 55 rQKLkdAe 62 (107)
T 2k48_A 55 RQKLKDAE 62 (107)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 369
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=37.79 E-value=72 Score=27.53 Aligned_cols=15 Identities=27% Similarity=0.315 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHH
Q 016629 329 SHRQKQLTKLYKCFI 343 (386)
Q Consensus 329 ~~~~~~~~~l~~~~~ 343 (386)
-..+++++||.+.|+
T Consensus 154 k~~e~~iQkltd~~i 168 (185)
T 1ise_A 154 RRSQDDVQKLTDAAI 168 (185)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566667766666
No 370
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=37.52 E-value=1.9e+02 Score=24.49 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 016629 309 DLQKRSKKLEEAL 321 (386)
Q Consensus 309 ~l~~~~~~~e~~~ 321 (386)
||+.++..|+..+
T Consensus 94 elq~ri~~L~~El 106 (168)
T 3o0z_A 94 DLQARITSLQEEV 106 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 371
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=37.46 E-value=73 Score=27.48 Aligned_cols=14 Identities=21% Similarity=0.358 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHH
Q 016629 330 HRQKQLTKLYKCFI 343 (386)
Q Consensus 330 ~~~~~~~~l~~~~~ 343 (386)
..+++++||.+.|+
T Consensus 155 ~~e~~iQkltd~~i 168 (185)
T 1is1_A 155 KAQEEIQKLTDVAV 168 (185)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 35566666666665
No 372
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=37.36 E-value=1.5e+02 Score=24.83 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 315 KKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 315 ~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
.+|+.......++....+..|..|+....
T Consensus 81 ~~le~l~~~i~~~a~~ik~~Lk~l~~~~~ 109 (180)
T 1s94_A 81 EELEELMTDIKRTANKVRGKLKTIELNIE 109 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666665443
No 373
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=36.98 E-value=75 Score=27.40 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 016629 330 HRQKQLTKLYKCFI 343 (386)
Q Consensus 330 ~~~~~~~~l~~~~~ 343 (386)
..+++++||.+.|+
T Consensus 155 ~~e~~iQkltd~~i 168 (185)
T 1wqg_A 155 RAEKDLDKTTHQYV 168 (185)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566667766666
No 374
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=36.98 E-value=75 Score=27.40 Aligned_cols=15 Identities=27% Similarity=0.430 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHH
Q 016629 329 SHRQKQLTKLYKCFI 343 (386)
Q Consensus 329 ~~~~~~~~~l~~~~~ 343 (386)
-..+++++||.+.|+
T Consensus 154 k~~e~~iQkltd~~i 168 (185)
T 1dd5_A 154 KRLENEIQKLTDEFI 168 (185)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345566666666665
No 375
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=36.81 E-value=1.3e+02 Score=22.59 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016629 283 IQRREELKKEISHMEERVNVKEQLVLDLQKRS 314 (386)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (386)
+.+-++|++.+..++..-+...+.+.+||.++
T Consensus 24 ~kQk~eL~~~l~~l~~e~~~R~~~i~el~aki 55 (101)
T 1d7m_A 24 IKQKDQLNSLLASLESEGAEREKRLRELEAKL 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666666666666777777777777654
No 376
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=36.75 E-value=1.6e+02 Score=23.45 Aligned_cols=32 Identities=9% Similarity=0.161 Sum_probs=23.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 016629 317 LEEALINAKKLSSHRQKQLTKLYKCFIQVNEY 348 (386)
Q Consensus 317 ~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 348 (386)
||..+..+...+.++..++..|+-.|..-+-+
T Consensus 31 le~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~ 62 (120)
T 3i00_A 31 LENMKTESQRVVLQLKGHVSELEADLAEQQHL 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34447777888888888888888888866544
No 377
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=36.57 E-value=1.3e+02 Score=22.42 Aligned_cols=14 Identities=21% Similarity=0.105 Sum_probs=5.6
Q ss_pred HHHHHhhhhhhhhH
Q 016629 348 YAERLKSCEREFQV 361 (386)
Q Consensus 348 ~~~~~~~~~~~~~~ 361 (386)
-.++|.....+|..
T Consensus 64 ~~~~L~~~K~eLE~ 77 (89)
T 3bas_A 64 KVEELLSKNYHLEN 77 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444433
No 378
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=36.21 E-value=40 Score=30.59 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQL 335 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~ 335 (386)
+++.+.++..|+.++.+|.+.|.++++-...++.++
T Consensus 56 l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeEl 91 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLMETLKEARQQLLALREEV 91 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444433333333333
No 379
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=36.12 E-value=1.2e+02 Score=21.88 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 016629 307 VLDLQKRSKKLEEAL 321 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~ 321 (386)
..||-++.+.+++.+
T Consensus 15 ~eel~~klk~~~ee~ 29 (71)
T 1s1c_X 15 NEELTEKMKKAEEEY 29 (71)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333434444333333
No 380
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=36.07 E-value=50 Score=28.50 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 016629 331 RQKQLTKLYKCFI 343 (386)
Q Consensus 331 ~~~~~~~l~~~~~ 343 (386)
.|++++||.+.|+
T Consensus 155 ~e~~iQkltd~~i 167 (184)
T 1ge9_A 155 ALERLQKLTDKYI 167 (184)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555554
No 381
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=35.79 E-value=77 Score=24.70 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=13.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKL 317 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (386)
.|+.+|+.|+..+....+++..++...+.|
T Consensus 10 ~Lk~El~~L~~~E~~LD~~i~~~~~~l~~l 39 (106)
T 2aze_B 10 GLTQDLRQLQESEQQLDHLMNICTTQLRLL 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455444444444444444444444444
No 382
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=35.70 E-value=80 Score=27.04 Aligned_cols=38 Identities=24% Similarity=0.454 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKL 338 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l 338 (386)
|++++-++.+++|++ ..|+.|..++++-.++|+.|.++
T Consensus 12 e~L~~~e~l~~el~~---tWeeKl~~te~~~~e~~~~l~~~ 49 (184)
T 4egx_A 12 ERLKETEKIIAELNE---TWEEKLRRTEAIRMEREALLAEM 49 (184)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444444432 34777777777777777766554
No 383
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=35.07 E-value=1.8e+02 Score=23.45 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=7.4
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 016629 321 LINAKKLSSHRQKQLTKLY 339 (386)
Q Consensus 321 ~~~~~~~~~~~~~~~~~l~ 339 (386)
+..-++++.....++..++
T Consensus 107 i~~Rr~fV~~~r~~I~~mk 125 (130)
T 4dnd_A 107 LQERKVFVERMREAVQEMK 125 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444333
No 384
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=34.86 E-value=1.9e+02 Score=23.89 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhh
Q 016629 334 QLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQ 366 (386)
Q Consensus 334 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (386)
++.+-++-+-..+..-++++.-.++|...|.+.
T Consensus 115 ~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 115 VLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 333333334444455566666677777766653
No 385
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=34.83 E-value=1.2e+02 Score=23.23 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 016629 309 DLQKRSKKLEEA 320 (386)
Q Consensus 309 ~l~~~~~~~e~~ 320 (386)
+|..++.+|+.+
T Consensus 51 eL~~EI~~L~~e 62 (96)
T 1t3j_A 51 HLEEEIARLSKE 62 (96)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333344444333
No 386
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.75 E-value=58 Score=19.92 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Q 016629 316 KLEEALINAKKLSSHRQKQLTKLYK 340 (386)
Q Consensus 316 ~~e~~~~~~~~~~~~~~~~~~~l~~ 340 (386)
|||+.+++.=.-.++++++|..|..
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444444333333444444444443
No 387
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=34.30 E-value=58 Score=22.41 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhH
Q 016629 337 KLYKCFIQVNEYAERLKSCEREFQV 361 (386)
Q Consensus 337 ~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (386)
..|.|+.||.++|+|..-....|+.
T Consensus 10 Rve~m~~~l~Evnekv~~ik~sL~~ 34 (56)
T 3e7k_A 10 RVEQMSIQIKEVGDRVNYIKRSLQS 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888888777666666654
No 388
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=34.12 E-value=1.1e+02 Score=20.72 Aligned_cols=11 Identities=18% Similarity=0.012 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 016629 341 CFIQVNEYAER 351 (386)
Q Consensus 341 ~~~~~~~~~~~ 351 (386)
..-+.+++++|
T Consensus 33 ~v~~ak~eA~R 43 (52)
T 1jcd_A 33 DAQAAKDDAAR 43 (52)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444444
No 389
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=34.04 E-value=1.6e+02 Score=22.81 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 016629 314 SKKLEEALINAKKLSSHRQKQLTKLYKCFIQ 344 (386)
Q Consensus 314 ~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (386)
..+|+......+++....+..|..|+....+
T Consensus 49 ~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 49 KEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666777777777777766665543
No 390
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=34.01 E-value=1.4e+02 Score=21.89 Aligned_cols=17 Identities=12% Similarity=0.204 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~ 321 (386)
..+..|+.+.++|+.++
T Consensus 47 ~yI~~L~~~~~~l~~e~ 63 (80)
T 1nlw_A 47 LHIKKLEDSDRKAVHQI 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 391
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=33.77 E-value=1.1e+02 Score=20.80 Aligned_cols=24 Identities=21% Similarity=0.389 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLS 328 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~ 328 (386)
.++.+|+.+.++|...++...+-.
T Consensus 17 DqV~eL~qe~k~m~k~lEeEqkAR 40 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEEQRAR 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666555555444433
No 392
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.11 E-value=1.6e+02 Score=22.52 Aligned_cols=31 Identities=16% Similarity=0.381 Sum_probs=13.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~ 321 (386)
.++..|.+.+.+......+.+.+..+|+.+|
T Consensus 26 ~e~~~L~~~l~eE~~~R~~aE~~~~~ie~El 56 (97)
T 2eqb_B 26 DEVKRLREDIAKENELRTKAEEEADKLNKEV 56 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444445555554444
No 393
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=32.83 E-value=2.3e+02 Score=24.38 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016629 308 LDLQKRSKKLEEALINAKKLSSHRQKQLTKLY 339 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 339 (386)
..|....++|++.+...+.|..+-.++.+.|+
T Consensus 86 ~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~ 117 (192)
T 2p22_C 86 EDLHEQKDKVQALLENARILESKYVASWQDYH 117 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444443
No 394
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=32.71 E-value=1.5e+02 Score=21.84 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=29.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSH 330 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~ 330 (386)
..++..|.+....++...++..||..=.++|++-+...+.=..+
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~ 57 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAE 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 46677777777778888888888877777777665444333333
No 395
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.60 E-value=1.7e+02 Score=22.48 Aligned_cols=71 Identities=17% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHhHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016629 289 LKKEISHMEERV--NVKEQ-LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (386)
Q Consensus 289 ~~~~~~~~~~~~--~~~~~-~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (386)
+.+.||.-.|++ |..+- ...||..+...||..+..+..-...+|++....--.+-.|...-++|+..++.|
T Consensus 11 l~KdFSe~YE~~h~ErL~~mSKqELIqEYl~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 11 LQRDFSETYERYHTESLQNMSKQELIKEYLELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQL 84 (104)
T ss_dssp ---CCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHH
Confidence 344555555442 22221 234678888888888888777777777766555333333444445555555444
No 396
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=32.50 E-value=1.5e+02 Score=21.93 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEALINA 324 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~ 324 (386)
..+..|+.++..|+..+...
T Consensus 29 ~~Ie~LE~~i~~le~~ladp 48 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQVADA 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 44445555555555555443
No 397
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.42 E-value=34 Score=23.30 Aligned_cols=22 Identities=5% Similarity=0.178 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016629 300 VNVKEQLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~ 321 (386)
++..+++..+|+.++..|..++
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444433
No 398
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=32.08 E-value=73 Score=27.51 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHH
Q 016629 327 LSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 327 ~~~~~~~~~~~l~~~~~ 343 (386)
-....+++++||.+.|+
T Consensus 153 ~~k~~e~~iQkltd~~i 169 (185)
T 1eh1_A 153 ETKRAEAEIQKITDEFI 169 (185)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33445666777777666
No 399
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.87 E-value=1.6e+02 Score=22.11 Aligned_cols=31 Identities=16% Similarity=0.227 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016629 309 DLQKRSKKLEEALINAKKLSSHRQKQLTKLY 339 (386)
Q Consensus 309 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 339 (386)
.|.++...++..+....+-..+.++++.+|+
T Consensus 69 ~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk 99 (107)
T 1fxk_A 69 ELQEKLETLQLREKTIERQEERVMKKLQEMQ 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333333333343333333
No 400
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=31.81 E-value=72 Score=22.35 Aligned_cols=17 Identities=24% Similarity=0.214 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016629 302 VKEQLVLDLQKRSKKLE 318 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~e 318 (386)
.+++.+.+|+.++..|+
T Consensus 27 RK~~~~~~Le~~v~~L~ 43 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELL 43 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444455555555443
No 401
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=31.52 E-value=1.9e+02 Score=22.68 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhh
Q 016629 307 VLDLQKRSKKLEEALINAK----KLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLS 368 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (386)
...|..+++++-..++.+. .+..+..+++.+|+..+. .++.-..++.+|.+|+.+++.+-.
T Consensus 41 a~~li~~F~~~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~-~n~~v~~~~~Ae~~l~~ll~~I~~ 105 (122)
T 2oeq_A 41 AYRMFANVRDIQLRLHEKQMRGAAILPDEIEQAQKAMALAQ-QNEKLARLMALEQQMSITIAEVQQ 105 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT-TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544 344556666666655543 556677888999999999887643
No 402
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=31.29 E-value=99 Score=27.68 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 016629 307 VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNE 347 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 347 (386)
+.+++..++.||+.++...+....+.+.+.+|+..|-.+-+
T Consensus 8 vd~~EErIs~le~rleei~q~eq~~ekrik~ne~sL~dL~d 48 (233)
T 2yko_A 8 CDQLEERVSAAEDEINEIKREGKFREKRIKRNEQSLQEIWD 48 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666677777777776665543
No 403
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=31.14 E-value=1.7e+02 Score=28.18 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=35.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--HHHHHHhhhhhhh
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVN--EYAERLKSCEREF 359 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~ 359 (386)
.++.+|..+...+..++.++..|++..+....-......+-.. -+..-|++++.+|+ -|++.+..++++|
T Consensus 313 ~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~~~q~~~ 384 (406)
T 4dyl_A 313 SVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLL--GKRQVLQEALQGLQVALCSQAKLQAQQEL 384 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHH--hHHhhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4455555555556666666666666665553322222221111 23334555555554 3566666666654
No 404
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=31.03 E-value=88 Score=21.16 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=14.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRS 314 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 314 (386)
.|+.+.+.|+.+++...+.+.+|..+.
T Consensus 23 aLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 23 LLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555543
No 405
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=30.97 E-value=1.1e+02 Score=20.05 Aligned_cols=30 Identities=23% Similarity=0.221 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 296 MEERVNVKEQLVLDLQKRSKKLEEALINAK 325 (386)
Q Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (386)
+||+++.-+-.++-||.++.+|=.+.....
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq 32 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQ 32 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777788888888887755544444
No 406
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=30.89 E-value=1.6e+02 Score=21.66 Aligned_cols=18 Identities=17% Similarity=0.303 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016629 307 VLDLQKRSKKLEEALINA 324 (386)
Q Consensus 307 ~~~l~~~~~~~e~~~~~~ 324 (386)
...++..+..+|.++..+
T Consensus 28 ~~~~q~~i~~lE~eL~~~ 45 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNM 45 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 407
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=30.84 E-value=1.3e+02 Score=20.55 Aligned_cols=34 Identities=35% Similarity=0.316 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 016629 279 LDRSIQRREELKKEISHMEERVNVKEQLVLDLQK 312 (386)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 312 (386)
..+-+|+-..|...|.+++..+.+++|++..|-+
T Consensus 13 ~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 13 LLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555557777777777777777777766543
No 408
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=30.83 E-value=1.3e+02 Score=20.44 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKK 316 (386)
Q Consensus 305 ~~~~~l~~~~~~ 316 (386)
+.+.+|+.++..
T Consensus 22 ~~~~~LE~~v~~ 33 (55)
T 1dh3_A 22 EYVKSLENRVAV 33 (55)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 409
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.61 E-value=1.1e+02 Score=19.77 Aligned_cols=32 Identities=19% Similarity=0.331 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALI 322 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 322 (386)
+.--|++-+....++-+..|..++..||.+++
T Consensus 17 kdnlqlerdeqnlekiianlrdeiarleneva 48 (52)
T 3he5_B 17 KDNLQLERDEQNLEKIIANLRDEIARLENEVA 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHh
Confidence 33334444455555666666777777776654
No 410
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=30.51 E-value=2.1e+02 Score=22.82 Aligned_cols=75 Identities=17% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHh
Q 016629 290 KKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIF 364 (386)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (386)
..++..+++.+..-+..........+.||........--..+|.+|.-=...+....+--++|.....+|..-|+
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~ 86 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVK 86 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
No 411
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=30.27 E-value=1.7e+02 Score=21.88 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
..+-...+|..+|.+--++..+..+.-.++...++ ..|...|.++.....+|+.|
T Consensus 28 ~~ir~eI~KElKiKeGaENL~katt~~kk~~~~V~---~eL~~sn~kl~~L~~eL~eL 82 (86)
T 1cxz_B 28 ERLRREIRKELKLKEGAENLRRATTDLGRSLGPVE---LLLRGSSRRLDLLHQQLQEL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Confidence 33444445555564444444444444111111222 22334466666666666654
No 412
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=30.19 E-value=1.7e+02 Score=21.77 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
.-+..||++.++|.++....++|...-+.-+..++..
T Consensus 39 dYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqEL 75 (83)
T 4ath_A 39 DYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQEL 75 (83)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 5566777777777777777777666666555554443
No 413
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=30.18 E-value=1.2e+02 Score=20.48 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLE 318 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e 318 (386)
+.++-.+.++.||+.++.+++
T Consensus 28 DEV~~Le~NLrEL~~ei~~~~ 48 (51)
T 1yzm_A 28 DEVRTLQENLRQLQDEYDQQQ 48 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345555666666666666554
No 414
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.15 E-value=3.3e+02 Score=26.39 Aligned_cols=13 Identities=38% Similarity=0.317 Sum_probs=5.0
Q ss_pred HHHHHHhhhhhhh
Q 016629 347 EYAERLKSCEREF 359 (386)
Q Consensus 347 ~~~~~~~~~~~~~ 359 (386)
+.+++++..-.++
T Consensus 449 ~~~~~~~~~~~~~ 461 (487)
T 3oja_A 449 EENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhhh
Confidence 3344443333333
No 415
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=30.00 E-value=45 Score=18.85 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016629 304 EQLVLDLQKRSKKLEEALI 322 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~ 322 (386)
..+++.|++++-+||++++
T Consensus 7 danvkrlekevgklegeva 25 (28)
T 4dac_A 7 DANVKRLEKEVGKLEGEVA 25 (28)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHhhhhhhhh
Confidence 4677778888888887754
No 416
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=29.97 E-value=1.3e+02 Score=22.89 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAK 325 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (386)
|..++......-.++++.++||+.++..|...|..+.
T Consensus 51 L~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 51 LQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
No 417
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.95 E-value=71 Score=22.86 Aligned_cols=19 Identities=11% Similarity=0.130 Sum_probs=6.3
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q 016629 324 AKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~ 342 (386)
+.....+++.++.|+...|
T Consensus 37 kd~eI~eLr~~LdK~qsVl 55 (67)
T 1zxa_A 37 KEEEIQELKRKLHKCQSVL 55 (67)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3333333334444444333
No 418
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=29.87 E-value=3.2e+02 Score=27.16 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
....+.++++.-||.++....++...-.+++++|.++|.
T Consensus 139 ~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~ 177 (526)
T 3iyk_A 139 NAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQ 177 (526)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 334445678888999999999999999999999999997
No 419
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.74 E-value=1.9e+02 Score=22.13 Aligned_cols=28 Identities=18% Similarity=0.280 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016629 311 QKRSKKLEEALINAKKLSSHRQKQLTKL 338 (386)
Q Consensus 311 ~~~~~~~e~~~~~~~~~~~~~~~~~~~l 338 (386)
.++...|+..+....+-..+.++++.+|
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~l 103 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKEL 103 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 420
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=29.60 E-value=63 Score=31.94 Aligned_cols=72 Identities=11% Similarity=0.165 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhhhhee
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQLSFFL 371 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (386)
++.-...+.+|.+.++.++..+.....-.....+-+.+|..-+.+....-+.|.....+++.+++..+.||-
T Consensus 283 ~~~l~~dl~~L~~~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFg 354 (457)
T 3obv_E 283 AENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFV 354 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333445555555555555554443211111122344555555555555556677777777888888888873
No 421
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=29.59 E-value=3.4e+02 Score=27.64 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 016629 304 EQLVLDLQKRSKKLEEALIN 323 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~~~ 323 (386)
+++...|+.+..++|..+++
T Consensus 500 ~~~~~~l~~~~~~~~~~~~~ 519 (592)
T 1f5n_A 500 QASAKMLHEMQRKNEQMMEQ 519 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333344443444443333
No 422
>3n7n_E Monopolin complex subunit LRS4; meiosis, rDNA, replication; 3.90A {Saccharomyces cerevisiae}
Probab=29.58 E-value=11 Score=28.72 Aligned_cols=38 Identities=21% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhh
Q 016629 330 HRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQL 367 (386)
Q Consensus 330 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (386)
.+|+|+++|-..+-.+..+|++||..++--++|..+=|
T Consensus 47 ~LQrQv~qLt~~lQ~~~~Ene~Lke~qKtqkal~ESKL 84 (95)
T 3n7n_E 47 FLQRQIAQLNKQLQLSFQENEKLLSVQKNQKALYQSKL 84 (95)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666667777766666555555443
No 423
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=29.21 E-value=1.9e+02 Score=21.96 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Q 016629 301 NVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQV 361 (386)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 361 (386)
+.-...+..++.+..+|+..-..-=+--+..+.+++.+++.+..| ++.+.-+..+|.-
T Consensus 35 ~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl---~~q~~~~~~qLdk 92 (96)
T 3q8t_A 35 KVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSV---ENQMRYAQMQLDK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 333344444555555554444444444555555555555544433 5555555555443
No 424
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=28.87 E-value=62 Score=26.46 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=18.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALI 322 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 322 (386)
....++..|.+.+.+......+.+.+..+|+.+|+
T Consensus 43 ~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE 77 (135)
T 2e7s_A 43 DRDDEVKRLREDIAKENELRTKAEEEADKLNKEVE 77 (135)
T ss_dssp THHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555555544443
No 425
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=28.68 E-value=99 Score=22.98 Aligned_cols=19 Identities=5% Similarity=-0.104 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016629 306 LVLDLQKRSKKLEEALINA 324 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~ 324 (386)
.+..++..+..+|.++..+
T Consensus 29 ~l~~~q~~i~~lE~el~~~ 47 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEM 47 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555443
No 426
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=28.47 E-value=1.4e+02 Score=20.10 Aligned_cols=41 Identities=10% Similarity=0.097 Sum_probs=26.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 322 INAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 322 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
+-|...+..+||.+-.|++.|..- .++.+....+|..+++.
T Consensus 8 efAERsV~KLek~ID~LEdeL~~e---Kek~~~i~~eLD~tl~e 48 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQ---KLKYKAISEELDHALND 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHH
Confidence 346667777888888888877733 44455555666666544
No 427
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=28.30 E-value=2.2e+02 Score=22.38 Aligned_cols=14 Identities=7% Similarity=-0.009 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 016629 331 RQKQLTKLYKCFIQ 344 (386)
Q Consensus 331 ~~~~~~~l~~~~~~ 344 (386)
||-.|.-|+.-+.+
T Consensus 67 R~~~Vs~lq~Kiae 80 (113)
T 4fi5_A 67 REGVAVSIQAKIDE 80 (113)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 428
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=28.22 E-value=2.3e+02 Score=22.85 Aligned_cols=51 Identities=12% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLY 339 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~ 339 (386)
.......+++.++.-++.+.+|+.-...|+..+..-+.........+.++.
T Consensus 79 ~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~~~~~~~~ 129 (142)
T 3gp4_A 79 LEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFN 129 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
No 429
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=28.03 E-value=1.8e+02 Score=21.48 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKC 341 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~ 341 (386)
..+.+|+.++..|-+.++....-..+.++....+|.-
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~d 63 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQ 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555444444444444444433
No 430
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=27.97 E-value=84 Score=22.88 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HhhhhHHHHHHHHHHH
Q 016629 305 QLVLDLQKRSKKLEEALINA-------KKLSSHRQKQLTKLYK 340 (386)
Q Consensus 305 ~~~~~l~~~~~~~e~~~~~~-------~~~~~~~~~~~~~l~~ 340 (386)
+.+.+++.+++.|-.+|.+- -+||..+|++|.++-.
T Consensus 12 ~~~~e~k~kv~~LQ~eLdtsE~VQrDFVkLSQsLQvqLE~IRq 54 (79)
T 1tu3_F 12 QLMFEEKNKAQRLQTELDVSEQVQRDFVKLSQTLQVQLERIRQ 54 (79)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555555554444443 4667777777766653
No 431
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.68 E-value=4.2e+02 Score=25.47 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAK-----------KLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (386)
....++.+.++|+.+.++|-+-.... +.+++-|+++..||..+. ..+.+|+..+-|+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 466 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEIT---TLNHKLQDASAEV 466 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 33456777888888888876654433 333444444444444333 3355555554443
No 432
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=27.28 E-value=1.9e+02 Score=28.93 Aligned_cols=28 Identities=11% Similarity=-0.213 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhhhhhhHhHhhhhhhee
Q 016629 344 QVNEYAERLKSCEREFQVSIFNQLSFFL 371 (386)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (386)
+++...+.++..|.++..+-..+-..+|
T Consensus 124 ~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 124 RGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444443333333333
No 433
>2pih_A Protein YMCA; regulate community development, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.281.1.1
Probab=27.27 E-value=2.6e+02 Score=22.90 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhhhh
Q 016629 308 LDLQKRSKKLEEALINAKKL-----SSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFNQL 367 (386)
Q Consensus 308 ~~l~~~~~~~e~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (386)
..|..+++++-..+..+... ..+-.+++.+|+..+. .+..-...+.+|++|+.|+..+-
T Consensus 43 q~li~eF~~~Q~~~~~~q~~Gk~~~~~e~~~el~~l~~~l~-~np~V~~y~~Ae~~l~~LL~~I~ 106 (151)
T 2pih_A 43 STIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQEELE-EIPVIQEFRDSQMEVNDLLQLVA 106 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444443322 2333455555555543 33445566777777777766543
No 434
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.26 E-value=3.1e+02 Score=27.23 Aligned_cols=18 Identities=6% Similarity=0.100 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016629 304 EQLVLDLQKRSKKLEEAL 321 (386)
Q Consensus 304 ~~~~~~l~~~~~~~e~~~ 321 (386)
+....+|+.+..++-.++
T Consensus 46 ~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 435
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=27.12 E-value=2.1e+02 Score=21.89 Aligned_cols=73 Identities=12% Similarity=0.117 Sum_probs=32.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSI 363 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (386)
.++.+|.+++.++...+.++..|+.+.. .+...-....+.+.+.-..|++.=..|=+.+++.+..++.-+..+
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~---eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~ 81 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIA---KENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAI 81 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555444433333333332222 222222222233333334455555566677777776665544433
No 436
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.04 E-value=2.9e+02 Score=27.11 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016629 302 VKEQLVLDLQKRSKKLEEALI 322 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~e~~~~ 322 (386)
+....+.+|+.+..++..++.
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~ 62 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIG 62 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444443
No 437
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.03 E-value=58 Score=32.18 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhhhhhHhHhhhhhheeeeeEEEEeecc
Q 016629 342 FIQVNEYAERLKSCEREFQVSIFNQLSFFLHYHVIISVSVP 382 (386)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (386)
..+++...++++..|.++..+-..+-..+|..=-++.=+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP 115 (455)
T 2dq0_A 75 LAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVP 115 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCC
Confidence 34444445555555555555444444444443333333344
No 438
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=26.94 E-value=1.3e+02 Score=22.40 Aligned_cols=34 Identities=18% Similarity=0.112 Sum_probs=26.0
Q ss_pred eEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhcCCc
Q 016629 66 VVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDMNGR 103 (386)
Q Consensus 66 I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l~g~ 103 (386)
|..+.++. ..+||.||++...++...++..+.|.
T Consensus 40 i~~v~vP~----~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILASE----SLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEECT----TSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEec----ccCCEEEEEEecchhHHHHHHCCCCc
Confidence 55555543 37899999999998888888877654
No 439
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=26.91 E-value=3.8e+02 Score=26.21 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 279 LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (386)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 353 (386)
.+..++....++.+|....+.++.......+ +.....|+..-.....++..|+..|..|+.-|-.+.++-.=+.
T Consensus 37 Ve~LLqKH~~lE~eI~a~~~~v~~l~~~a~~-~~~~~~L~~~y~~L~~~a~~Rr~~Le~L~qFl~d~~ee~~Wi~ 110 (450)
T 3r6n_A 37 VEQHINSHRGIHNSIGDYRWQLDKIKADLRE-KSAIYQLEEEYENLLKASFERMDHLRQLQNIIQATSREIMWIN 110 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666777776666555443322110 1245667777777788888888888888766665555443333
No 440
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=26.79 E-value=2.9e+02 Score=23.43 Aligned_cols=79 Identities=11% Similarity=0.102 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016629 279 LDRSIQRREELKKEISHMEERVNVKEQL--------VLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAE 350 (386)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 350 (386)
.+..++..+.+..+|......++.-... ...++.+..+|+..-.....++..|+..|..|++-|-.+.++..
T Consensus 40 ve~llkkH~~le~ei~~~~~~v~~l~~~a~~l~~~~~~~i~~rl~~l~~~~~~L~~~a~~R~~~L~~L~~f~~~~~~~~~ 119 (210)
T 3pdy_A 40 VEAQLGSHRGLHQSIEEFRAKIERARSDEGQLSPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLESLHSFVAAATKELM 119 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555544443332221 12477778888888888888888898888888776665555544
Q ss_pred HHhhhhh
Q 016629 351 RLKSCER 357 (386)
Q Consensus 351 ~~~~~~~ 357 (386)
=+..-|.
T Consensus 120 Wl~eke~ 126 (210)
T 3pdy_A 120 WLNEKEE 126 (210)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444333
No 441
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=26.54 E-value=1.3e+02 Score=20.37 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh
Q 016629 335 LTKLYKCFIQVNEYAERLKSCEREF 359 (386)
Q Consensus 335 ~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (386)
+..|+..+.+|...|..|+.--..|
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L 48 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKAL 48 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333
No 442
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=26.52 E-value=75 Score=31.70 Aligned_cols=20 Identities=5% Similarity=-0.165 Sum_probs=8.4
Q ss_pred HHHHHHHHhhhhhhhhHhHh
Q 016629 345 VNEYAERLKSCEREFQVSIF 364 (386)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~ 364 (386)
+++..++++..|.++..+-.
T Consensus 80 ~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 443
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=26.51 E-value=1.8e+02 Score=25.52 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHH
Q 016629 330 HRQKQLTKLYKCFI 343 (386)
Q Consensus 330 ~~~~~~~~l~~~~~ 343 (386)
..+++++||.+.|+
T Consensus 179 ~~e~eiQklTd~~i 192 (209)
T 4gfq_A 179 GYTEDIQKETDKYI 192 (209)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34455666666665
No 444
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=26.19 E-value=1.3e+02 Score=23.95 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=12.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHH
Q 016629 318 EEALINAKKLSSHRQKQLTKL 338 (386)
Q Consensus 318 e~~~~~~~~~~~~~~~~~~~l 338 (386)
+.+...+.|...+.-++..++
T Consensus 40 ~~lEsiAAKIIkDisdkId~C 60 (129)
T 3f6n_A 40 ESLETVAAKIVNDLTKLINDC 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHHHHhcC
Confidence 344556677777766666554
No 445
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=26.12 E-value=90 Score=21.32 Aligned_cols=28 Identities=11% Similarity=0.290 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 293 ISHMEERVNVKEQLVLDLQKRSKKLEEA 320 (386)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (386)
+.++.+.++...+++.+|+.++..|++.
T Consensus 29 Ld~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 29 LAQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555556666666666666543
No 446
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=26.02 E-value=67 Score=23.33 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 299 RVNVKEQLVLDLQKRSKKLEEALINAKKLS 328 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 328 (386)
.+|..+..+.||..++.+||-+-...+.+.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555667778888887776654444443
No 447
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=25.94 E-value=1.9e+02 Score=20.90 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=13.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 318 EEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 318 e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
++.+..+..+..+|.-...||.+.=+
T Consensus 19 dna~e~~e~lE~ERdFYf~KLRdiE~ 44 (75)
T 3mtu_A 19 ENALDRAEQAEADKDFYFGKLRNIEL 44 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44445555555555555555555444
No 448
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=25.88 E-value=4.8e+02 Score=25.63 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=30.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
++++.|..|. +.+.+++.....+-..+.+...+...+|+++...+..|.||
T Consensus 62 dv~~rI~kLk-------n~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~ 112 (491)
T 1m1j_A 62 NYSQRIDNIR-------QQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHV 112 (491)
T ss_dssp HHHHHHHHHH-------HHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-------HHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 5555554444 55555665555555566666666666666666666555554
No 449
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=25.86 E-value=2.2e+02 Score=21.68 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhhhhhhhhHh
Q 016629 342 FIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~ 362 (386)
...|++|...|....++|+-+
T Consensus 73 ~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 73 SNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666677776644
No 450
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=25.86 E-value=1.7e+02 Score=20.36 Aligned_cols=29 Identities=7% Similarity=0.049 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016629 331 RQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (386)
Q Consensus 331 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (386)
.|..+..|+..+.+|...|+.|...-..|
T Consensus 28 K~~~~~~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 28 KLQRMKQLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433333
No 451
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=25.58 E-value=1.4e+02 Score=19.21 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016629 302 VKEQLVLDLQKRSKKLEEALI 322 (386)
Q Consensus 302 ~~~~~~~~l~~~~~~~e~~~~ 322 (386)
+.+..+.+|+.+...||+.+.
T Consensus 7 eLE~r~k~le~~naeLEervs 27 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLS 27 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555554444443
No 452
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=25.54 E-value=1.9e+02 Score=20.80 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=14.3
Q ss_pred HHHhhhhhhhhHhHhhhhhhe
Q 016629 350 ERLKSCEREFQVSIFNQLSFF 370 (386)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~ 370 (386)
+.....=.+|..+|+.+|.|+
T Consensus 94 ~~i~~~~~~l~~~i~~ll~~~ 114 (114)
T 3zcc_A 94 ESINKDIEECNAIIEQFIDYL 114 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 445556667778888877764
No 453
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=25.48 E-value=1.3e+02 Score=26.31 Aligned_cols=27 Identities=7% Similarity=-0.118 Sum_probs=23.8
Q ss_pred CceEEEEEeCChhhHHHHHHhcCCcee
Q 016629 79 GKCYGFVTFGNPRSAVDAINDMNGRTI 105 (386)
Q Consensus 79 ~kG~aFVeF~~~~~A~~Ai~~l~g~~i 105 (386)
.+||-|||=....+...|+..+.+...
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 789999999999999999998887633
No 454
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=25.12 E-value=2.6e+02 Score=27.12 Aligned_cols=10 Identities=0% Similarity=0.019 Sum_probs=3.9
Q ss_pred hhhhHhHhhh
Q 016629 357 REFQVSIFNQ 366 (386)
Q Consensus 357 ~~~~~~~~~~ 366 (386)
++|..+|..+
T Consensus 122 ~~L~~~v~~l 131 (411)
T 3ghg_C 122 VNLKEKVAQL 131 (411)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 455
>2kes_A Synphilin-1; synphillin, coiled-coil, ANK repeat, disease mutation, parki disease, phosphoprotein, polymorphism, UBL conjugation, Pro binding; NMR {Homo sapiens}
Probab=24.95 E-value=1.4e+02 Score=19.19 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016629 299 RVNVKEQLVLDLQKRSK 315 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~ 315 (386)
+++++-.....||+..+
T Consensus 19 ql~eqt~~rv~lq~qlq 35 (48)
T 2kes_A 19 QLKEQTVERVTLQNQLQ 35 (48)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 456
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=24.94 E-value=82 Score=20.97 Aligned_cols=18 Identities=11% Similarity=0.067 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 016629 299 RVNVKEQLVLDLQKRSKK 316 (386)
Q Consensus 299 ~~~~~~~~~~~l~~~~~~ 316 (386)
.+.-.+.++.||+.++..
T Consensus 28 EV~~L~~NL~EL~~E~~~ 45 (48)
T 3v1a_A 28 EVRTLQENLHQLMHEYFQ 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455555555555543
No 457
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=24.74 E-value=2.8e+02 Score=22.43 Aligned_cols=44 Identities=23% Similarity=0.395 Sum_probs=20.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 016629 288 ELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKL 338 (386)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l 338 (386)
.+..++...++.++---++..|.|-++-+|. |-..-+||.+.+|
T Consensus 22 s~~~eleEnqeEL~iVgkML~EEqgKVDQlq-------KRn~~HQKEi~~L 65 (167)
T 4gkw_A 22 SLQKQLEENQEELEIVGNMLREEQGKVDQLQ-------KRNVAHQKEIGKL 65 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HhccHHHHHHHHH
Confidence 3344444444444444444444444444442 3334455555555
No 458
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=24.25 E-value=1.7e+02 Score=19.88 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=13.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 289 LKKEISHMEERVNVKEQLVLDLQKRSKKLEEA 320 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~ 320 (386)
|+.++..+.-+...-.+..++.|+.-+.||..
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~ 46 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKL 46 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333334444444444444443
No 459
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=24.16 E-value=2.4e+02 Score=21.51 Aligned_cols=9 Identities=33% Similarity=0.438 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 016629 313 RSKKLEEAL 321 (386)
Q Consensus 313 ~~~~~e~~~ 321 (386)
-.++|.++.
T Consensus 24 A~QKLkdA~ 32 (96)
T 2ic9_A 24 TRQKLKDAE 32 (96)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333443333
No 460
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=23.90 E-value=1.4e+02 Score=23.76 Aligned_cols=13 Identities=15% Similarity=0.141 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHH
Q 016629 331 RQKQLTKLYKCFI 343 (386)
Q Consensus 331 ~~~~~~~l~~~~~ 343 (386)
.|++++||-+.|+
T Consensus 84 ~e~eIQKLTDkyI 96 (121)
T 3lf9_A 84 ALWEIQKLTDVAV 96 (121)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555555
No 461
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=23.67 E-value=1.7e+02 Score=19.73 Aligned_cols=55 Identities=11% Similarity=0.090 Sum_probs=41.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHh
Q 016629 39 ESSVYVGGLPYSANEDSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAIND 99 (386)
Q Consensus 39 ~~~lfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~ 99 (386)
..++.|.++....-...++..+.. ..|..+.+.. ..+-+.|+|.+.+....||..
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~-----~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDL-----NEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECS-----SEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEc-----cCCEEEEEECCHHHHHHHHHH
Confidence 357889999888888899999998 8888887744 345778888855566667765
No 462
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=23.66 E-value=2.6e+02 Score=26.65 Aligned_cols=48 Identities=15% Similarity=0.217 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 016629 303 KEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAE 350 (386)
Q Consensus 303 ~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 350 (386)
.+..+.+|....++|+..|.+.....-+..+++..|.=.++||.-+.+
T Consensus 210 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~rd 257 (373)
T 3hhm_B 210 LKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKTRD 257 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 334445556666667666666666655555666666666666654333
No 463
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=23.63 E-value=3.7e+02 Score=23.47 Aligned_cols=49 Identities=29% Similarity=0.335 Sum_probs=25.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQV 345 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (386)
..+..+++.+.++.+..+....+|. .++|+-+.+++.+. +.|+.-|++|
T Consensus 135 ~~~~~~~~~L~~e~~~l~~~~~~l~---~qlE~~v~~K~~~E-------~~L~~KF~~l 183 (213)
T 1ik9_A 135 AENQAKNEHLQKENERLLRDWNDVQ---GRFEKAVSAKEALE-------TDLYKRFILV 183 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 3445555555555555555544443 44455555555544 4566666665
No 464
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=23.27 E-value=1.6e+02 Score=21.44 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016629 306 LVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAER 351 (386)
Q Consensus 306 ~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 351 (386)
..+||.+-+.+++..+..+.+...+++..+-.| |+.|=+++=+
T Consensus 15 treELi~l~lk~~~~l~~k~~~v~eLEdYID~L---LvRVME~~P~ 57 (75)
T 3tso_C 15 TYEEVLQELVKHKELLRRKDTHIRELEDYIDNL---LVRVMEETPS 57 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHCGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhCcH
Confidence 345666666677777766666666666665544 4555555443
No 465
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=23.20 E-value=3.6e+02 Score=23.16 Aligned_cols=9 Identities=11% Similarity=0.036 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 016629 334 QLTKLYKCF 342 (386)
Q Consensus 334 ~~~~l~~~~ 342 (386)
+++.|+..|
T Consensus 101 ~~~~L~~~~ 109 (192)
T 2p22_C 101 NARILESKY 109 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344333
No 466
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.20 E-value=1.2e+02 Score=29.61 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHhhhhhhhhHhHhhhhhheee
Q 016629 342 FIQVNEYAERLKSCEREFQVSIFNQLSFFLH 372 (386)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (386)
..+++...++++..+.++..+-..+...+|.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (421)
T 1ses_A 70 IARGKALGEEAKRLEEALREKEARLEALLLQ 100 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444555555555555544444444443
No 467
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=22.67 E-value=1.2e+02 Score=24.41 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=9.5
Q ss_pred HHHHHHHHHHH-HHHHHHHHhh
Q 016629 307 VLDLQKRSKKL-EEALINAKKL 327 (386)
Q Consensus 307 ~~~l~~~~~~~-e~~~~~~~~~ 327 (386)
..+|-+.++++ |+...+....
T Consensus 48 RkeLvK~akk~aEeaKVaIRNI 69 (123)
T 3lhp_S 48 IKDWLKIVRGEAEQARVAVRNV 69 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555554 4444443333
No 468
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=22.50 E-value=2.7e+02 Score=21.44 Aligned_cols=68 Identities=19% Similarity=0.166 Sum_probs=38.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhhHHH----HHHHHHHHHHHHHHHHHHHHhhhhhh
Q 016629 293 ISHMEERVNVKEQLVLDLQKRSKKLEEALINAK----------KLSSHRQ----KQLTKLYKCFIQVNEYAERLKSCERE 358 (386)
Q Consensus 293 ~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~----------~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~ 358 (386)
+..+..+++..+.+...|..+...||.+|.... |+.-..- .-...++..+.+|+.+.++|+.--+-
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~~ 93 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLRA 93 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555556888888888888888887621 1100000 11223456666667777777665544
Q ss_pred hh
Q 016629 359 FQ 360 (386)
Q Consensus 359 ~~ 360 (386)
|+
T Consensus 94 lE 95 (100)
T 1go4_E 94 ME 95 (100)
T ss_dssp CC
T ss_pred Hh
Confidence 43
No 469
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=22.27 E-value=2.4e+02 Score=25.72 Aligned_cols=76 Identities=8% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
.+++.++.+++..+...+..+...+.+....+..+...+.|...-----..|+.+-.++....+.+...+.+|+.+
T Consensus 65 ~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a 140 (341)
T 3fpp_A 65 EQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRN 140 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 470
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=22.24 E-value=3.9e+02 Score=23.24 Aligned_cols=14 Identities=21% Similarity=0.116 Sum_probs=8.3
Q ss_pred hhhhHhHhhhhhhe
Q 016629 357 REFQVSIFNQLSFF 370 (386)
Q Consensus 357 ~~~~~~~~~~~~~~ 370 (386)
.-|+.+|..++.|+
T Consensus 219 ~~l~~f~~~Q~~f~ 232 (251)
T 2fic_A 219 NTFQSIAGLEENFH 232 (251)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666664
No 471
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=22.15 E-value=15 Score=30.66 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCCeEEEEEeeCCCCCCceEEEEEeC
Q 016629 54 DSVRKVFDKYGSVVAVKIVNDRSTRGKCYGFVTFG 88 (386)
Q Consensus 54 ~~L~~~F~~~G~I~~v~i~~~~~~~~kG~aFVeF~ 88 (386)
+++.++|...|.|+.+.. .+||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~-------~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNV-------RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEET-------TTTEEEEEEE
T ss_pred CcccccccceeEEEEEEC-------CCCeeEEeeC
Confidence 455667777777654432 5689999875
No 472
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.10 E-value=2.4e+02 Score=20.71 Aligned_cols=16 Identities=25% Similarity=0.304 Sum_probs=6.8
Q ss_pred HHHHHhhhhhhhhHhH
Q 016629 348 YAERLKSCEREFQVSI 363 (386)
Q Consensus 348 ~~~~~~~~~~~~~~~~ 363 (386)
+-+|+.-..++|.-.|
T Consensus 57 lq~Ki~elkrqlAd~v 72 (78)
T 2ic6_A 57 LETKLGELKRELADLI 72 (78)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 473
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=22.08 E-value=3.4e+02 Score=23.06 Aligned_cols=28 Identities=21% Similarity=0.112 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 301 NVKEQLVLDLQKRSKKLEEALINAKKLS 328 (386)
Q Consensus 301 ~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 328 (386)
.-....+..||+++-.||+.|..++...
T Consensus 131 ~~AertV~kLqkeiD~LEDeL~~eKek~ 158 (175)
T 3mud_A 131 CYCLDTTAKNEKSIDDLEEKVAHAKEEN 158 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444667777777777777765554433
No 474
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.92 E-value=1.8e+02 Score=20.72 Aligned_cols=32 Identities=25% Similarity=0.455 Sum_probs=20.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 291 KEISHMEERVNVKEQLVLDLQKRSKKLEEALI 322 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~ 322 (386)
.-|+.||..+..++.++.+|+++..+.-+-+.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566677777788888888877777655554
No 475
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=21.80 E-value=3.7e+02 Score=22.95 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=7.1
Q ss_pred HHHHHHHHhhhhHHHHHHHH
Q 016629 318 EEALINAKKLSSHRQKQLTK 337 (386)
Q Consensus 318 e~~~~~~~~~~~~~~~~~~~ 337 (386)
|+...+......+-.+.+.|
T Consensus 122 E~aKvaiRniRrda~~~lKk 141 (185)
T 1wqg_A 122 EEAKVSVRNIRRKAMEELHR 141 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 476
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=21.61 E-value=2.3e+02 Score=24.08 Aligned_cols=44 Identities=9% Similarity=0.150 Sum_probs=26.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHhh
Q 016629 319 EALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIFN 365 (386)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (386)
+.+--+.+.+..+|+.+-+|++.|... .++-+...++|..|++.
T Consensus 128 eli~~AertV~kLqkeiD~LEDeL~~e---Kek~k~i~~eLDqTl~e 171 (175)
T 3mud_A 128 ELICYCLDTTAKNEKSIDDLEEKVAHA---KEENLNMHQMLDQTLLE 171 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344556666677777777777777644 34444555556555543
No 477
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=21.57 E-value=1.1e+02 Score=28.69 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=10.1
Q ss_pred HHhhhhhhhhHhHhhhhhhe
Q 016629 351 RLKSCEREFQVSIFNQLSFF 370 (386)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~ 370 (386)
.|.....+++.++...+.||
T Consensus 263 ~l~~~~~~~~~~~~~l~~yf 282 (340)
T 1v9d_A 263 KLRMMHSNMETLYKELGDYF 282 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555555555
No 478
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=21.55 E-value=4e+02 Score=23.14 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=15.5
Q ss_pred hhHhHhhhhhheeeeeEEEEee
Q 016629 359 FQVSIFNQLSFFLHYHVIISVS 380 (386)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~ 380 (386)
|..||...|.-++..+|+|.|+
T Consensus 121 L~~Li~eal~~l~e~~v~V~~~ 142 (233)
T 4efa_E 121 LQSLIVEALLKLLEPKAIVKAL 142 (233)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEC
T ss_pred HHHHHHHHHHhcCCCcEEEEec
Confidence 5666666777777788887664
No 479
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.53 E-value=2.6e+02 Score=23.12 Aligned_cols=60 Identities=20% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 016629 283 IQRREELKKEISHMEER---VNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCF 342 (386)
Q Consensus 283 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~ 342 (386)
+...+++..-|+.|=+- .+++.+.+.+|+++....+.+++.+-+---.+.+++..|...+
T Consensus 67 i~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 67 ILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 480
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=21.50 E-value=2.3e+02 Score=20.37 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 016629 333 KQLTKLYKCFIQVNEYAERLKSCER 357 (386)
Q Consensus 333 ~~~~~l~~~~~~~~~~~~~~~~~~~ 357 (386)
...++.+++|..+.+.+.+|+..|.
T Consensus 42 ~vA~~tyda~~~l~~ak~~L~~~~~ 66 (71)
T 2js5_A 42 EVAEKTYEAYRQLDEFRKSTASLEH 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567889999998888888887664
No 481
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.43 E-value=4.3e+02 Score=23.40 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 016629 309 DLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLK 353 (386)
Q Consensus 309 ~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 353 (386)
.+.++...|+..|+.+..=....+.++..+-.++.++++.-+++.
T Consensus 175 ~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3q0x_A 175 EVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHL 219 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444455555555555455556666777777777777666653
No 482
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=21.39 E-value=2.7e+02 Score=26.72 Aligned_cols=45 Identities=11% Similarity=-0.014 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
+-++..++.+.+|++++.+++..+++. .-+...++++..|++++.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~~~~~~~~~~~ 291 (426)
T 1lrz_A 247 EYIKELNEERDILNKDLNKALKDIEKR-PENKKAHNKRDNLQQQLD 291 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhC-cccHHHHHHHHHHHHHHH
Confidence 345666677777777777777766432 223333445555555444
No 483
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=21.36 E-value=84 Score=18.28 Aligned_cols=23 Identities=30% Similarity=0.431 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh
Q 016629 336 TKLYKCFIQVNEYAERLKSCEREFQ 360 (386)
Q Consensus 336 ~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (386)
-||+..|+ +.+.+-|+.-|..|+
T Consensus 7 wklheefl--kkfeellklheerlk 29 (32)
T 1m3w_A 7 WKLHEEFL--KKFEELLKLHEERLK 29 (32)
T ss_dssp HHHHHHHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHH
Confidence 35666665 334444444444443
No 484
>1z0k_B FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB gtpases, effector complex, vesicular trafficking, protein transport; HET: GTP MES; 1.92A {Homo sapiens} SCOP: a.2.19.1
Probab=21.32 E-value=76 Score=22.82 Aligned_cols=21 Identities=14% Similarity=0.215 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016629 298 ERVNVKEQLVLDLQKRSKKLE 318 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e 318 (386)
+.++-.+.++.||+.++.+++
T Consensus 46 DEV~tLe~NLrEL~~ei~~~q 66 (69)
T 1z0k_B 46 DEVRTLQENLRQLQDEYDQQQ 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 446666677777777766554
No 485
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=21.21 E-value=3.9e+02 Score=22.83 Aligned_cols=10 Identities=40% Similarity=0.345 Sum_probs=3.8
Q ss_pred hhhhhhhhHh
Q 016629 353 KSCEREFQVS 362 (386)
Q Consensus 353 ~~~~~~~~~~ 362 (386)
+..|.++|-+
T Consensus 155 k~~e~~iQkl 164 (185)
T 1eh1_A 155 KRAEAEIQKI 164 (185)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 486
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=21.01 E-value=2.8e+02 Score=21.10 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 016629 314 SKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQ 360 (386)
Q Consensus 314 ~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 360 (386)
+.++|..|..|..|..+--..+..|--.+ =..+++|++....+|.
T Consensus 51 i~~ie~~ldEA~eLl~qMelE~r~~p~s~--R~~~~~klr~Yk~dL~ 95 (102)
T 2qyw_A 51 VRDFDEKQQEANETLAEMEEELRYAPLTF--RNPMMSKLRNYRKDLA 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCHHH--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHHHHHH
Confidence 44445555555555554444444432111 1234455555555544
No 487
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=20.97 E-value=3e+02 Score=22.03 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016629 300 VNVKEQLVLDLQKRSKKLEEALINAK 325 (386)
Q Consensus 300 ~~~~~~~~~~l~~~~~~~e~~~~~~~ 325 (386)
.+++.+.+.+|+++....+.+++.+-
T Consensus 87 ee~Q~~ri~~L~~E~~~~~~el~~~v 112 (132)
T 1ykh_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAI 112 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777776666555443
No 488
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.93 E-value=2.6e+02 Score=20.65 Aligned_cols=66 Identities=15% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 016629 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFI 343 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (386)
+.+......+.|-.+|-.+.-++++-+-+...-+++.+...++++..+++-...--.+..|+..++
T Consensus 13 ~~ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~ 78 (81)
T 3qh9_A 13 EQEEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLS 78 (81)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
No 489
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=20.89 E-value=2.8e+02 Score=21.12 Aligned_cols=51 Identities=16% Similarity=0.271 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016629 278 ELDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLS 328 (386)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~ 328 (386)
.+.+...+...+..+|..--+++.+-...+++|..++-.||.+++-.+||.
T Consensus 56 ~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~ 106 (114)
T 2xzr_A 56 TLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLI 106 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
No 490
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=20.85 E-value=3.9e+02 Score=22.77 Aligned_cols=74 Identities=22% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016629 284 QRREELKKEISHMEERVNVKEQLV-LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (386)
+.++++-+.+-.+-|+....--++ -+-.+++++++......+.-....+++++||.+.|+ ....+-++.-|+||
T Consensus 108 ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i--~~id~~~~~KEkEi 182 (185)
T 1is1_A 108 ERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAV--KKIDEVLAAKEKEL 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
No 491
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.75 E-value=3.1e+02 Score=25.01 Aligned_cols=79 Identities=6% Similarity=0.043 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHh
Q 016629 284 QRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVS 362 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 362 (386)
.....++.++..++..++..+......+.....++.+.....--..+....-..|..+-.++....+.+...+.+|..+
T Consensus 69 ~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a 147 (341)
T 3fpp_A 69 NQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTA 147 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 492
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=20.71 E-value=4.6e+02 Score=24.02 Aligned_cols=76 Identities=9% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016629 287 EELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKL-------SSHRQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (386)
.++..++.+.+..++..+..+...+.+....+..+...++| ..+....-..|..+-.++....+.+...+.+|
T Consensus 66 ~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~~~l 145 (369)
T 4dk0_A 66 TTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAEIEV 145 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHh
Q 016629 360 QVS 362 (386)
Q Consensus 360 ~~~ 362 (386)
..+
T Consensus 146 ~~a 148 (369)
T 4dk0_A 146 NTA 148 (369)
T ss_dssp HHH
T ss_pred HHH
No 493
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=20.59 E-value=1.4e+02 Score=23.08 Aligned_cols=59 Identities=12% Similarity=0.128 Sum_probs=0.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHHhhcCC---------CeEEEEEeeCCCCCCceEEEEEeCChhhHHHHHHhc
Q 016629 38 DESSVYVGGLPYSANEDSVRKVFDKYG---------SVVAVKIVNDRSTRGKCYGFVTFGNPRSAVDAINDM 100 (386)
Q Consensus 38 ~~~~lfVgnLp~~~te~~L~~~F~~~G---------~I~~v~i~~~~~~~~kG~aFVeF~~~~~A~~Ai~~l 100 (386)
....||.-.....-..+-...+..++- .|.+|..... .+||-|||=....+...|+..+
T Consensus 4 ~Dp~i~~Vk~~~G~Er~va~~L~~k~~~~~~~~~~l~I~Si~~~~~----lkGyIyVEA~~~~~V~~ai~gi 71 (106)
T 3h7h_B 4 MDPNLWTVKCKIGEERATAISLMRKFIAYQFTDTPLQIKSVVAPEH----VKGYIYVEAYKQTHVKQAIEGV 71 (106)
T ss_dssp CCCEEEEEECCTTCHHHHHHHHHHHHHHHTTSSSCCCCCEEEECTT----CCSEEEEEESSHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCcHHHHHHHHHHHHHHhhccCCCcceEEEEecCC----CceEEEEEeCCHHHHHHHHhcc
No 494
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=20.57 E-value=3.5e+02 Score=23.51 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 016629 279 LDRSIQRREELKKEISHMEERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYA 349 (386)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 349 (386)
++.+++.-+.|..+|..+++.+...+++..+|+.-+.++.......+.|......-+--|...-+..-+.+
T Consensus 110 L~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e~~~~~~~d~~~~~ 180 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESLDNQEFDSEEET 180 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCchhhhcchhhhc
No 495
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=20.35 E-value=4e+02 Score=22.71 Aligned_cols=74 Identities=23% Similarity=0.241 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 016629 284 QRREELKKEISHMEERVNVKEQLV-LDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREF 359 (386)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (386)
+.++++-+.+-.+-|+....--++ -+-.+++++++......+.-.-..+++++||.+.|+ ....+-++.-|+||
T Consensus 108 ErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQkltd~~i--~~id~~~~~KEkEi 182 (185)
T 1ise_A 108 ERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAI--KKIEAALADKEAEL 182 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
No 496
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=20.12 E-value=2.5e+02 Score=22.49 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHh
Q 016629 298 ERVNVKEQLVLDLQKRSKKLEEALINAKKLSSHRQKQLTKLYKCFIQVNEYAERLKSCEREFQVSIF 364 (386)
Q Consensus 298 ~~~~~~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (386)
+.+++.+..+.+|+.++..+|..+.++...-.---..+..|++.+..- .+-|--.+.+|...|+
T Consensus 61 e~leeL~~ki~eL~~kvA~le~e~~~~e~~~~~~~~~~e~le~~la~K---kAEleKtqa~Ld~aln 124 (125)
T 2pms_C 61 SKLEELSDKIDELDAEIAKLEDQLKAAEENNNVEDYFKEGLEKTIAAK---KAELEKTEADLKKAVN 124 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhc
No 497
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=20.08 E-value=1.4e+02 Score=19.60 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 016629 303 KEQLVLDLQKRSKKLEEALINA 324 (386)
Q Consensus 303 ~~~~~~~l~~~~~~~e~~~~~~ 324 (386)
|+.-+.|+.++++||.++.+.|
T Consensus 13 KqEIL~E~RkElqK~K~EIIeA 34 (45)
T 1use_A 13 KQELLEEVKKELQKVKEEIIEA 34 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Done!