BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016630
(386 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225434853|ref|XP_002282322.1| PREDICTED: uncharacterized protein LOC100241598 [Vitis vinifera]
gi|297746029|emb|CBI16085.3| unnamed protein product [Vitis vinifera]
Length = 393
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 280/413 (67%), Positives = 305/413 (73%), Gaps = 52/413 (12%)
Query: 3 TSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRTSA 38
+S T VY+ VIEDVI+K IWEMKM+QAGV+ I+R++A
Sbjct: 4 SSMTSTVYVSVIEDVINKVRDEFVNNGGPGESVLSELQGIWEMKMVQAGVVTGPIERSTA 63
Query: 39 PKQPAPG-GPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 97
PKQ + P PVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG
Sbjct: 64 PKQTSGAPAPTPPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG--------- 114
Query: 98 LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157
DNS YNIPTG ++YP A D GG T+ KSG P SPWM R
Sbjct: 115 ---------MGDNSMYNIPTGPTEYPA-AQDGGGATDMKSGRPPSYMPPP---SPWMQQR 161
Query: 158 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217
PPLSVDVNVAYVEGRDE DRG S QPLTQDFF MS+GKRKREDFP+QYH GY IPQQDG
Sbjct: 162 PPLSVDVNVAYVEGRDEGDRGNSQQPLTQDFFMMSSGKRKREDFPSQYHTSGY-IPQQDG 220
Query: 218 AGDAMSEIFELEVSEFPGR---QDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLS 274
AGD E+FE+EVS+ D +T ANREIF +A S V+IPQLDGPIPDPY+DVLS
Sbjct: 221 AGDPAPEVFEVEVSQGSNSIKGHDILTKANREIFPQVAGSYVRIPQLDGPIPDPYEDVLS 280
Query: 275 TPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE-PLNENDDDELDDV 333
TPNIYNYQGVVNEDYNIVNTPAPNDIQA TPAV QND +DDDDE PLNENDDD+LDDV
Sbjct: 281 TPNIYNYQGVVNEDYNIVNTPAPNDIQAGTPAVGIQNDVGDDDDDEPPLNENDDDDLDDV 340
Query: 334 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+QGEELNTQHLVLAQFDKVTRTKS+WKC LKDGIMHINNKDILFNKA GEFDF
Sbjct: 341 EQGEELNTQHLVLAQFDKVTRTKSKWKCTLKDGIMHINNKDILFNKANGEFDF 393
>gi|224054626|ref|XP_002298340.1| predicted protein [Populus trichocarpa]
gi|222845598|gb|EEE83145.1| predicted protein [Populus trichocarpa]
Length = 409
Score = 475 bits (1222), Expect = e-131, Method: Compositional matrix adjust.
Identities = 280/426 (65%), Positives = 321/426 (75%), Gaps = 57/426 (13%)
Query: 1 MATSATGMVYIRVIEDVISKI---------------------WEMKMIQAGVI---IDRT 36
MA+SAT VY VIEDVI K+ WE K++QAGV+ I R+
Sbjct: 1 MASSATSTVYTEVIEDVIDKVRDEFINNGGPGETVLSELQGLWEKKLMQAGVLSGPIVRS 60
Query: 37 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGS--TPLPG 94
SA KQ PGG +TPVHDLNVPYEGTEEYETPTAEILFPPTPL QTPLPG+ TPLPG
Sbjct: 61 SANKQLVPGG-LTPVHDLNVPYEGTEEYETPTAEILFPPTPLPGSAQTPLPGNVQTPLPG 119
Query: 95 STPLPGSTPLPGTADNST-YNIPTGSS-DYPTPASDSGGNTEAKSGNGRPSSYMPPPPSP 152
+ P TPLPG+ DNS+ YNI TGSS DYPTP SD+GG+T+ K+G RPS +M P SP
Sbjct: 120 NVP----TPLPGSVDNSSMYNISTGSSSDYPTPVSDAGGSTDVKAG--RPSHFMQSP-SP 172
Query: 153 WMNPRPPLSVDVN----------VAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFP 202
M+ RPPL V+V VAYVEGRDE DRG SHQ LTQDFF MS+GKRKR DF
Sbjct: 173 LMHQRPPLDVNVGKVLTNKCCAFVAYVEGRDEVDRGGSHQTLTQDFF-MSSGKRKRGDFA 231
Query: 203 AQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLD 262
+Y+NGG+ IPQQDGA D+ SE+ ++E D++TT NREI A ++ S VKIPQ+D
Sbjct: 232 PKYNNGGF-IPQQDGAVDSASEVSQVEC-------DTITTKNREILARVSRSYVKIPQVD 283
Query: 263 GPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPL 322
GPIPDPYDD+LSTPNIYNYQGV NEDYNI NTPAPND+QASTPAVV+QND +DDDDEPL
Sbjct: 284 GPIPDPYDDMLSTPNIYNYQGVANEDYNIANTPAPNDLQASTPAVVSQNDDVDDDDDEPL 343
Query: 323 NENDDDELDD--VDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
NE+DDD+ D VDQGEELNTQHL+LAQFDKVTRTKSRWKC LKDG+MHINN+DILFNKA
Sbjct: 344 NEDDDDDEDLDGVDQGEELNTQHLILAQFDKVTRTKSRWKCTLKDGVMHINNRDILFNKA 403
Query: 381 TGEFDF 386
TGEF+F
Sbjct: 404 TGEFEF 409
>gi|255558990|ref|XP_002520518.1| protein with unknown function [Ricinus communis]
gi|223540360|gb|EEF41931.1| protein with unknown function [Ricinus communis]
Length = 383
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 266/405 (65%), Positives = 309/405 (76%), Gaps = 59/405 (14%)
Query: 9 VYIRVIEDVISK--------------------IWEMKMIQAGVI---IDRTSAPKQPAPG 45
VYI VIEDV++K IWE+KM+QAGVI I+R+S K PG
Sbjct: 11 VYIHVIEDVVNKVRDEFINNGPGETVLNELQAIWELKMMQAGVICGPIERSSGAKT-VPG 69
Query: 46 GPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLP 105
G ITPVHDLNVPYEGTEEYETPTAEILFPPTPL PG+ TPLP
Sbjct: 70 GVITPVHDLNVPYEGTEEYETPTAEILFPPTPL--------------PGT----AQTPLP 111
Query: 106 GTADNST-YNIPTG-SSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPRPPLSVD 163
G+ DNS+ YNIPTG +S+YPTP SDSGG+TEAK+G RPS YM PP SPW+N RPPL D
Sbjct: 112 GSVDNSSMYNIPTGPTSEYPTPVSDSGGSTEAKAG--RPSPYMQPP-SPWINQRPPL--D 166
Query: 164 VNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMS 223
VN+AYVEGR+EADRGTS+QPLTQDFFT ++GKRKREDF AQY+NGG+ IPQQDGAGD
Sbjct: 167 VNIAYVEGREEADRGTSNQPLTQDFFTGASGKRKREDFAAQYNNGGF-IPQQDGAGDTPF 225
Query: 224 EIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQG 283
E+ ++E +D+V +A+ EI +++ +KIPQLDGPIPDPYDDVLSTPNIYNYQG
Sbjct: 226 EVLQVE-------RDTVISADIEILSSVTRRGLKIPQLDGPIPDPYDDVLSTPNIYNYQG 278
Query: 284 VVNEDYNIVNTPAPNDIQASTPAVVTQN--DAAEDDDDEPLNENDDDELDDVDQGEELNT 341
V NEDYNI NTPAPND+QASTPA++ QN +DD+ +++DDD+LDDVDQGE++NT
Sbjct: 279 VANEDYNIANTPAPNDLQASTPAIIPQNDVVDDDDDEPLNEDDDDDDDLDDVDQGEDMNT 338
Query: 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
QHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 339 QHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 383
>gi|449450764|ref|XP_004143132.1| PREDICTED: transcription initiation factor IIA large subunit-like
[Cucumis sativus]
gi|449496658|ref|XP_004160191.1| PREDICTED: transcription initiation factor IIA large subunit-like
[Cucumis sativus]
Length = 402
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 261/427 (61%), Positives = 305/427 (71%), Gaps = 66/427 (15%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTS 37
MATS T +YI VIEDVI+K+ WE KM+QAG + I+R S
Sbjct: 1 MATS-TSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIER-S 58
Query: 38 APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 97
AP +P PGGPITPVHDLNVPYEGTEEYETPTA++LFPPTPLQTPIQTPLPG
Sbjct: 59 APSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPTPLQTPIQTPLPG--------- 109
Query: 98 LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSG---------GNTEAKSGNGRPSSYMPP 148
TADN+ YN+PTG SD+ +D+ GN + +GRP+ YM P
Sbjct: 110 ---------TADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQP 160
Query: 149 PPSPWMNPRPPLSVDVNVAYVEGRDEA-DRGTS--HQPLTQDFFTMSAGKRKREDFPAQY 205
P WM R P VDVN+AYVEGR+EA DRG + H LTQDFF M++GKRKR+DF +QY
Sbjct: 161 PS--WMGQRTP--VDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQY 216
Query: 206 HNGGYNIPQQDGAGDAMSEIFELEVS---EFPGRQDSVTTANREIFANLASSSVKIPQLD 262
G+ IPQQDGAGDA + +FE+E+S GR ++T+A +++ S +KIPQLD
Sbjct: 217 QANGF-IPQQDGAGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLD 275
Query: 263 GPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDD-EP 321
GP+PDPYDDVLSTPNIYNYQGV NEDYNI NTPAPND A TPAVVTQ+D E+++D EP
Sbjct: 276 GPMPDPYDDVLSTPNIYNYQGVFNEDYNIANTPAPNDPPAGTPAVVTQDDVNEEEEDSEP 335
Query: 322 -LNE-NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
LNE +DDD+LDDVDQGEEL+TQHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNK
Sbjct: 336 SLNEDDDDDDLDDVDQGEELSTQHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNK 395
Query: 380 ATGEFDF 386
ATGEFDF
Sbjct: 396 ATGEFDF 402
>gi|356550303|ref|XP_003543527.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 1 [Glycine max]
Length = 391
Score = 445 bits (1145), Expect = e-122, Method: Compositional matrix adjust.
Identities = 259/419 (61%), Positives = 298/419 (71%), Gaps = 61/419 (14%)
Query: 1 MATSATGMVYIRVIEDVISKI---------------------WEMKMIQAGVI---IDRT 36
MA S T VYI VIEDV+ K+ WE KM+QAG + I+R+
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60
Query: 37 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
+A K P PGGPITPVHDLNVPYEGT+EYETPTA++LFPPTPLQTPIQTPLPG
Sbjct: 61 TAAK-PTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQTPLPG-------- 111
Query: 97 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 156
T DNSTYNIPTG SDYP+ +D+GGN + K RP+ YM P SPWMN
Sbjct: 112 ----------TGDNSTYNIPTGPSDYPSSGNDTGGNADGKGA--RPAPYMQSP-SPWMNQ 158
Query: 157 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 216
RPPL DVNVAYVEGRDEADRGTS+QP TQDFFTM +GKRKR D +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGY-IPQQD 215
Query: 217 GAGDAMSEIFELEVSEFPGRQDSV----TTANREIFANLASSSVKIPQLDGPIPDPYDDV 272
GAGDA FE+EVS GR S+ T + ++ A+L S+ +IPQLDGPIP DDV
Sbjct: 216 GAGDATHGDFEIEVS---GRGISINSHHTISKGKMSADLERSTSRIPQLDGPIPYDDDDV 272
Query: 273 LSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD-----DEPLNENDD 327
LSTPNIYNY V +EDYNI NTPAP ++ ASTPA++ QN+ D D + PLNE DD
Sbjct: 273 LSTPNIYNYGEVFSEDYNISNTPAPPEVPASTPALLVQNEVGNDFDDDDDDEPPLNEEDD 332
Query: 328 DELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
D+LDD++QGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 333 DDLDDMEQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 391
>gi|356557404|ref|XP_003547006.1| PREDICTED: transcription initiation factor IIA large subunit-like
[Glycine max]
Length = 390
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 255/416 (61%), Positives = 298/416 (71%), Gaps = 56/416 (13%)
Query: 1 MATSATGMVYIRVIEDVISKI---------------------WEMKMIQAGVI---IDRT 36
MA S T VYI VIEDV+ K+ WE KM+QAG + I+R+
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60
Query: 37 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
SA K PGGPITPVHDLNVPYEGTEEYETPTA++LFPPTPLQTPIQTPLPG
Sbjct: 61 SAAKA-TPGGPITPVHDLNVPYEGTEEYETPTADMLFPPTPLQTPIQTPLPG-------- 111
Query: 97 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 156
T DNSTYNIPTG++DYP+ +D+GGN + K RP+ YM P SPWMN
Sbjct: 112 ----------TGDNSTYNIPTGANDYPSSGNDTGGNADGKGA--RPAPYMQPS-SPWMNQ 158
Query: 157 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 216
RPPL DVNVAYVEGRDEAD+GTS+QPLTQDFFT ++GKRKR D +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADKGTSNQPLTQDFFTRTSGKRKRNDLTSQYNVGGY-IPQQD 215
Query: 217 GAGDAMSEIFELEVSEFPGRQDSVTTANRE-IFANLASSSVKIPQLDGPIPDPYDDVLST 275
GAGDA +FE+EVS +S T ++E + A+L S+ +IPQLDGPIP DDVLST
Sbjct: 216 GAGDAAHGVFEIEVSGGGISINSHHTISKEKMSADLERSTSRIPQLDGPIPYD-DDVLST 274
Query: 276 PNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD-----DEPLNENDDDEL 330
PNIYNY V +EDYNI NTPAP ++ ASTPA++ QN+ D D + PLNE DDD+L
Sbjct: 275 PNIYNYGEVFSEDYNISNTPAPPEVPASTPALLAQNEVGNDFDDDDDDEPPLNEEDDDDL 334
Query: 331 DDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
DD++QG++ NT HLVLAQFDKV RTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 335 DDMEQGDDQNTHHLVLAQFDKVARTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 390
>gi|356550305|ref|XP_003543528.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 2 [Glycine max]
Length = 384
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 253/415 (60%), Positives = 292/415 (70%), Gaps = 60/415 (14%)
Query: 1 MATSATGMVYIRVIEDVISKI---------------------WEMKMIQAGVI---IDRT 36
MA S T VYI VIEDV+ K+ WE KM+QAG + I+R+
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNNGGPGEEVLKELQAMWESKMMQAGAVLGPIERS 60
Query: 37 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
+A K P PGGPITPVHDLNVPYEGT+EYETPTA++LFPPTPLQTPIQTPLPG
Sbjct: 61 TAAK-PTPGGPITPVHDLNVPYEGTDEYETPTADMLFPPTPLQTPIQTPLPG-------- 111
Query: 97 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 156
T DNSTYNIPTG SDYP+ +D+GGN + K RP+ YM P SPWMN
Sbjct: 112 ----------TGDNSTYNIPTGPSDYPSSGNDTGGNADGKGA--RPAPYMQSP-SPWMNQ 158
Query: 157 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 216
RPPL DVNVAYVEGRDEADRGTS+QP TQDFFTM +GKRKR D +QY+ GGY IPQQD
Sbjct: 159 RPPL--DVNVAYVEGRDEADRGTSNQPPTQDFFTMPSGKRKRNDLTSQYNAGGY-IPQQD 215
Query: 217 GAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 276
GAGDA FE+E + + ++ A+L S+ +IPQLDGPIP DDVLSTP
Sbjct: 216 GAGDATHGDFEIEFLKI------AYISKGKMSADLERSTSRIPQLDGPIPYDDDDVLSTP 269
Query: 277 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD-----DEPLNENDDDELD 331
NIYNY V +EDYNI NTPAP ++ ASTPA++ QN+ D D + PLNE DDD+LD
Sbjct: 270 NIYNYGEVFSEDYNISNTPAPPEVPASTPALLVQNEVGNDFDDDDDDEPPLNEEDDDDLD 329
Query: 332 DVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
D++QGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 330 DMEQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 384
>gi|224104389|ref|XP_002313420.1| predicted protein [Populus trichocarpa]
gi|222849828|gb|EEE87375.1| predicted protein [Populus trichocarpa]
Length = 401
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 266/422 (63%), Positives = 304/422 (72%), Gaps = 57/422 (13%)
Query: 1 MATS-ATGMVYIRVIEDVISKI---------------------WEMKMIQAGVI---IDR 35
MA+S AT VYI VIEDVI+K+ WE KM+QAG I IDR
Sbjct: 1 MASSDATSPVYINVIEDVINKVRDEFINNGGPGETVLYELQGLWETKMMQAGAICGTIDR 60
Query: 36 TSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTP--LQTPIQTPLPGSTPLP 93
+SA K P PGGPITPVHDLNVPYEGTEEYETPTAEILFPP QTPLPG+
Sbjct: 61 SSANKLPVPGGPITPVHDLNVPYEGTEEYETPTAEILFPPCANTFTWNAQTPLPGN---- 116
Query: 94 GSTPLPGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSP 152
TPLPG+ DNS+ YNIPTGSSDYPTP SD+GG+T+ K+G RPS +M S
Sbjct: 117 ------AQTPLPGSVDNSSMYNIPTGSSDYPTPVSDAGGSTDGKAG--RPSPFMV---ST 165
Query: 153 WMNPRPPL----SVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNG 208
+ +P L VAYVEGRDE DRGTSHQ LTQDFF M +GKRKREDF +Y+NG
Sbjct: 166 DLIFQPSLVLTNKCCAFVAYVEGRDEVDRGTSHQALTQDFF-MPSGKRKREDFAPKYNNG 224
Query: 209 GYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDP 268
G+ IPQQDGAGD+ SE+ ++E++ TT N+EI A ++ S +KIPQ+DGPIPDP
Sbjct: 225 GF-IPQQDGAGDSASEVSQVELN----VNSYFTTKNKEILARVSRSYLKIPQVDGPIPDP 279
Query: 269 YDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQ---NDAAEDDDDEPLNEN 325
YDDVLSTPNIYNYQGV NEDYNI NTPAPND ASTPAVV+Q D +DD+ +++
Sbjct: 280 YDDVLSTPNIYNYQGVANEDYNIANTPAPNDPLASTPAVVSQNDVADDDDDDEPLNEDDD 339
Query: 326 DDDELDDVDQGEELNT-QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
DD++LDDVDQGEELNT QHLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF
Sbjct: 340 DDEDLDDVDQGEELNTPQHLVLAQFDKVTRTKSRWKCILKDGIMHINNKDILFNKATGEF 399
Query: 385 DF 386
DF
Sbjct: 400 DF 401
>gi|356538972|ref|XP_003537974.1| PREDICTED: uncharacterized protein LOC100800601 [Glycine max]
Length = 392
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 262/420 (62%), Positives = 301/420 (71%), Gaps = 62/420 (14%)
Query: 1 MATSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRT 36
MA S T VYI+VI+DV++K IWE KM+QAG I I+R+
Sbjct: 1 MAASTTSQVYIQVIDDVMNKVRDEFVNNGGPGDEVLKELQSIWESKMMQAGAIVGPIERS 60
Query: 37 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
APK P PGGPITPVHDLN+PYEGTEEYETPTAE+LFPPTPLQTP+QTPLPG
Sbjct: 61 GAPK-PTPGGPITPVHDLNMPYEGTEEYETPTAEMLFPPTPLQTPLQTPLPG-------- 111
Query: 97 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 156
T DNS YNIPTG SDYP+ ++ G N E K G RP YM PPPSPW N
Sbjct: 112 ----------TVDNSMYNIPTGPSDYPSAGNEPGANNEIKGG--RPGPYMQPPPSPWTNQ 159
Query: 157 ------RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGY 210
R PL DVNVAYVEGRDEA+RG S+QPLTQDFF MS+GKRKR++ +QY+ GGY
Sbjct: 160 NQNQNQRAPL--DVNVAYVEGRDEAERGASNQPLTQDFF-MSSGKRKRDEIASQYNAGGY 216
Query: 211 NIPQQDGAGDAMSEIFELEVSEFPGRQDS-VTTANREIFANLASSSVKIPQLDGPIPDPY 269
IPQQDGAGDA S+I E+EV D+ +T+ ++ A + +IPQLDGPIP Y
Sbjct: 217 -IPQQDGAGDAASQILEIEVYGGGMSIDAGHSTSKGKMPAQSDRPASQIPQLDGPIP--Y 273
Query: 270 DD-VLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE--PLNEND 326
DD VLSTPNIYNY GV NEDYNI NTPAP+++ ASTPA + QN+ E+DDD+ PLNEND
Sbjct: 274 DDDVLSTPNIYNY-GVFNEDYNIANTPAPSEVPASTPAPIAQNEVDEEDDDDEPPLNEND 332
Query: 327 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
DD+LDD+DQGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEFDF
Sbjct: 333 DDDLDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFDF 392
>gi|356542286|ref|XP_003539600.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 1 [Glycine max]
Length = 382
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 255/416 (61%), Positives = 294/416 (70%), Gaps = 64/416 (15%)
Query: 1 MATSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRT 36
MA S+T VYI+VI+DV+ K IWE KM+QAG I I+R+
Sbjct: 1 MAASSTSQVYIQVIDDVMIKVRDEFVNNGGPGDEVLKELQSIWESKMLQAGAIVGPIERS 60
Query: 37 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
APK P PGGPITPVHDLN+PYEGTEEYETPTAE+LFPPTPLQTP+QTPLPG
Sbjct: 61 GAPK-PTPGGPITPVHDLNMPYEGTEEYETPTAEMLFPPTPLQTPLQTPLPG-------- 111
Query: 97 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPP--SPWM 154
T DNS YNIPTG SDYP+ ++ G N E K G RP YM PPP S
Sbjct: 112 ----------TVDNSMYNIPTGPSDYPSAGNEPGENNEIKGG--RPGPYMQPPPWTSQNQ 159
Query: 155 NPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQ 214
N R PL DVNVAYVEGRD A+RG S+QPLTQDFF MS+GKRKR++ +QY+ GGY IPQ
Sbjct: 160 NQRAPL--DVNVAYVEGRDAAERGASNQPLTQDFF-MSSGKRKRDEIASQYNAGGY-IPQ 215
Query: 215 QDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD-VL 273
QDGAGDA S+IFE+EV F +T+N ++ A+ + +IPQ DGPIP YDD V+
Sbjct: 216 QDGAGDADSQIFEIEVWHF------FSTSNGKMPAHSDRPASQIPQFDGPIP--YDDDVV 267
Query: 274 STPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE--PLNENDDDELD 331
STPN+YNY GV NEDYNI NTPA +D+ ASTPA V QN+ E+DDD+ PLNENDDD+
Sbjct: 268 STPNMYNY-GVFNEDYNIANTPASSDVPASTPAPVAQNEVDEEDDDDDEPLNENDDDDDL 326
Query: 332 DVD-QGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
D QGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 327 DDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 382
>gi|356542288|ref|XP_003539601.1| PREDICTED: transcription initiation factor IIA large subunit-like
isoform 2 [Glycine max]
Length = 389
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 255/417 (61%), Positives = 295/417 (70%), Gaps = 59/417 (14%)
Query: 1 MATSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRT 36
MA S+T VYI+VI+DV+ K IWE KM+QAG I I+R+
Sbjct: 1 MAASSTSQVYIQVIDDVMIKVRDEFVNNGGPGDEVLKELQSIWESKMLQAGAIVGPIERS 60
Query: 37 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
APK P PGGPITPVHDLN+PYEGTEEYETPTAE+LFPPTPLQTP+QTPLPG
Sbjct: 61 GAPK-PTPGGPITPVHDLNMPYEGTEEYETPTAEMLFPPTPLQTPLQTPLPG-------- 111
Query: 97 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPP--SPWM 154
T DNS YNIPTG SDYP+ ++ G N E K G RP YM PPP S
Sbjct: 112 ----------TVDNSMYNIPTGPSDYPSAGNEPGENNEIKGG--RPGPYMQPPPWTSQNQ 159
Query: 155 NPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQ 214
N R PL DVNVAYVEGRD A+RG S+QPLTQDFF MS+GKRKR++ +QY+ GGY IPQ
Sbjct: 160 NQRAPL--DVNVAYVEGRDAAERGASNQPLTQDFF-MSSGKRKRDEIASQYNAGGY-IPQ 215
Query: 215 QDGAGDAMSEIFELEVSEFPGRQDS-VTTANREIFANLASSSVKIPQLDGPIPDPYDD-V 272
QDGAGDA S+IFE+EV D+ +T+N ++ A+ + +IPQ DGPIP YDD V
Sbjct: 216 QDGAGDADSQIFEIEVYGGGISIDAGHSTSNGKMPAHSDRPASQIPQFDGPIP--YDDDV 273
Query: 273 LSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE--PLNENDDDEL 330
+STPN+YNY GV NEDYNI NTPA +D+ ASTPA V QN+ E+DDD+ PLNENDDD+
Sbjct: 274 VSTPNMYNY-GVFNEDYNIANTPASSDVPASTPAPVAQNEVDEEDDDDDEPLNENDDDDD 332
Query: 331 DDVD-QGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
D QGE+ NT HLVLAQFDKVTRTKSRWKC LKDGIMHINNKDILFNKATGEF+F
Sbjct: 333 LDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKDILFNKATGEFEF 389
>gi|357454247|ref|XP_003597404.1| Transcription factor/ transcription initiation factor [Medicago
truncatula]
gi|355486452|gb|AES67655.1| Transcription factor/ transcription initiation factor [Medicago
truncatula]
gi|388523053|gb|AFK49588.1| unknown [Medicago truncatula]
Length = 388
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 250/415 (60%), Positives = 283/415 (68%), Gaps = 56/415 (13%)
Query: 1 MATSATGMVYIRVIEDVISK----------------------IWEMKMIQAGVI---IDR 35
MA S T VYI VIEDV+ K IWE K IQAG + I+R
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNTGASPGDEVLRELQAIWESKCIQAGAVLGPIER 60
Query: 36 TSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGS 95
+ +P PGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG
Sbjct: 61 NTGVNRPMPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG------- 113
Query: 96 TPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMN 155
PG TP YNIPTG SDY + +D+GGN + K G ++MPPP SPWMN
Sbjct: 114 ---PGETP--------NYNIPTGPSDYSS-GNDAGGNADVKGGR---QAFMPPP-SPWMN 157
Query: 156 --PRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIP 213
RPPL DVNVAYVEGRDEADRG S+QP+TQDFFTM+ GKRKR D P Y GGY IP
Sbjct: 158 MNQRPPL--DVNVAYVEGRDEADRGASNQPMTQDFFTMTGGKRKRNDLPPPYDAGGY-IP 214
Query: 214 QQDGAGDAMSEIFELEVSEFPGRQDSVTTANR-EIFANLASSSVKIPQLDGPIPDPYDDV 272
QQDGAGDA+S FE+EV +S T ++ ++ A+L + +IPQLDGPIP DDV
Sbjct: 215 QQDGAGDAVSGDFEIEVCGGSISFNSQHTNSKGKMPADLERLASRIPQLDGPIPY-EDDV 273
Query: 273 LSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDD 332
LSTPNIYNY GV NEDYNI NTPAP ++ ASTPA+V QN+A +D+D+ DDD+ D
Sbjct: 274 LSTPNIYNYGGVFNEDYNIANTPAPPEVPASTPALVAQNEAVNEDEDDEPLNEDDDDDLD 333
Query: 333 VDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
E+ T HLVLAQFDKVTRTKSRWKC LKDGIMHIN KDILFNKATGEFDF
Sbjct: 334 DLDQEDDQDTNHLVLAQFDKVTRTKSRWKCTLKDGIMHINKKDILFNKATGEFDF 388
>gi|312282103|dbj|BAJ33917.1| unnamed protein product [Thellungiella halophila]
Length = 375
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 246/410 (60%), Positives = 289/410 (70%), Gaps = 64/410 (15%)
Query: 3 TSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRTSA 38
T+ T VYI VIEDV++K IWEMKM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLNELQGIWEMKMMQAGVLSGPIERSSA 63
Query: 39 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 98
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPTPLQTP+
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPL---------------- 104
Query: 99 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157
TPLPGTADNS+ YNIPTGSSDYPTP +++G N +AK GRPS YM PP SPW NPR
Sbjct: 105 --PTPLPGTADNSSMYNIPTGSSDYPTPGTENGSNPDAK---GRPSPYMQPP-SPWTNPR 158
Query: 158 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217
+DVNVAYV+GRDE +RG S+Q TQD F S GKRKR+D AQY NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSNGKRKRDDSSAQYQNGG-SIPQQDG 213
Query: 218 AGDAMSEIFELEVSEFPGRQDSVT-TANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 276
A DAM + + G +T NR+ + SS KIPQ+DGP+PDPYD++LSTP
Sbjct: 214 ASDAMPK------ANIEGDTLCITLVGNRKFPRDFICSSSKIPQVDGPMPDPYDEILSTP 267
Query: 277 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQG 336
NIY+YQG +ED+N TPAPN+IQASTP V QND EDD++ ++DDDELDD++ G
Sbjct: 268 NIYSYQGP-SEDFNDGRTPAPNEIQASTP-VAAQNDIIEDDEELLNEDDDDDELDDLESG 325
Query: 337 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
E++NTQHLVLAQFDKVTRTKSRWKC LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 326 EDMNTQHLVLAQFDKVTRTKSRWKCNLKDGIMHINDKDILFNKAAGEFDF 375
>gi|312283537|dbj|BAJ34634.1| unnamed protein product [Thellungiella halophila]
Length = 330
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 232/368 (63%), Positives = 272/368 (73%), Gaps = 43/368 (11%)
Query: 24 MKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQT 80
MKM+QAGV+ I+R+SA K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPTPLQT
Sbjct: 1 MKMMQAGVLSGPIERSSAQK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQT 57
Query: 81 PIQTPLPGSTPLPGSTPLPGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGN 139
P+ TPLPGTADNS+ YNIPTGSSDYPTP +++G N +AK
Sbjct: 58 PL------------------PTPLPGTADNSSMYNIPTGSSDYPTPGTENGSNPDAK--- 96
Query: 140 GRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKRE 199
GRPS YM PP SPW NPR +DVNVAYV+GRDE +RG S+Q TQD F S GKRKR+
Sbjct: 97 GRPSPYMQPP-SPWTNPR----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSNGKRKRD 151
Query: 200 DFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVT-TANREIFANLASSSVKI 258
D AQY NGG +IPQQDGA DAM + + G +T NR+ + SS KI
Sbjct: 152 DSSAQYQNGG-SIPQQDGASDAMPK------ANIEGDTLCITLVGNRKFPRDFICSSSKI 204
Query: 259 PQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD 318
PQ+DGP+PDPYD++LSTPNIY+YQG +ED+N TPAPN+IQASTP V QND EDD+
Sbjct: 205 PQVDGPMPDPYDEILSTPNIYSYQGP-SEDFNDGRTPAPNEIQASTP-VAAQNDIIEDDE 262
Query: 319 DEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFN 378
+ ++DDDELDD++ GE++NTQHLVLAQFDKVTRTKSRWKC LKDGIMHIN+KDILFN
Sbjct: 263 ELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCNLKDGIMHINDKDILFN 322
Query: 379 KATGEFDF 386
KA GEFDF
Sbjct: 323 KAAGEFDF 330
>gi|8778565|gb|AAF79573.1|AC022464_31 F22G5.18 [Arabidopsis thaliana]
Length = 475
Score = 351 bits (901), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 234/430 (54%), Positives = 279/430 (64%), Gaps = 83/430 (19%)
Query: 3 TSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRTSA 38
T+ T VYI VIEDV++K IWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 39 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 98
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 99 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYM----------- 146
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ RPS YM
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKA---RPSPYMLCSETAYLGGL 159
Query: 147 ---------PPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRK 197
PPPSPW NPR +DVNVAYV+GRDE +RG S+Q TQD F S+GKRK
Sbjct: 160 QKLRLSTLLQPPPSPWTNPR----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRK 215
Query: 198 REDFPAQYHNGGYNIPQQDGAGDAMSEI-FELEVSEFPGRQDSVTTANREIFANLASSSV 256
R+D A Y NGG +IPQQDGA DA+ E FE +R+I +L SS
Sbjct: 216 RDDSSAHYQNGG-SIPQQDGASDAIPEANFECAALRI------TYVGDRKIPRDLIGSSS 268
Query: 257 KIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAED 316
KIPQ+DGP+PDPYD++LSTPNIY+YQG NE++N TPAPN+IQ STP V ND ED
Sbjct: 269 KIPQVDGPMPDPYDEMLSTPNIYSYQGP-NEEFNEARTPAPNEIQTSTPVAVP-NDIIED 326
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
D++ ++DDDELDD++ GE++NTQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDIL
Sbjct: 327 DEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDIL 386
Query: 377 FNKATGEFDF 386
FNKA+ D
Sbjct: 387 FNKASSTSDL 396
>gi|30680148|ref|NP_850937.1| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
gi|30680153|ref|NP_172228.3| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
gi|2826884|emb|CAA11525.1| transcription factor IIA large subunit [Arabidopsis thaliana]
gi|39545932|gb|AAR28029.1| TFIIA-L1 [Arabidopsis thaliana]
gi|222423282|dbj|BAH19617.1| AT1G07480 [Arabidopsis thaliana]
gi|225897890|dbj|BAH30277.1| hypothetical protein [Arabidopsis thaliana]
gi|332190011|gb|AEE28132.1| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
gi|332190012|gb|AEE28133.1| Transcription factor IIA, alpha/beta subunit [Arabidopsis thaliana]
Length = 375
Score = 350 bits (898), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 237/410 (57%), Positives = 286/410 (69%), Gaps = 64/410 (15%)
Query: 3 TSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRTSA 38
T+ T VYI VIEDV++K IWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 39 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 98
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPTPLQTP+
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPL---------------- 104
Query: 99 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157
TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ S PPPSPW NPR
Sbjct: 105 --PTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKA----RPSPYMPPPSPWTNPR 158
Query: 158 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDG 213
Query: 218 AGDAMSEI-FELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 276
AGDA+ E FE + + +R++ + SSS KIPQ+DGP+PDPYD++LSTP
Sbjct: 214 AGDAIPEANFECDAFRI------TSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTP 267
Query: 277 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQG 336
NIY+YQG +E++N TPAPN+IQ STP V QND EDD++ ++DDDELDD++ G
Sbjct: 268 NIYSYQGP-SEEFNEARTPAPNEIQTSTPVAV-QNDIIEDDEELLNEDDDDDELDDLESG 325
Query: 337 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
E++NTQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 326 EDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375
>gi|18390773|ref|NP_563790.1| transcription initiation factor TFIIA large subunit [Arabidopsis
thaliana]
gi|15983370|gb|AAL11553.1|AF424559_1 At1g07470/F22G5_13 [Arabidopsis thaliana]
gi|14532726|gb|AAK64164.1| putative transcription factor IIA large subunit [Arabidopsis
thaliana]
gi|15146226|gb|AAK83596.1| At1g07470/F22G5_13 [Arabidopsis thaliana]
gi|21554033|gb|AAM63114.1| transcription factor IIA large subunit [Arabidopsis thaliana]
gi|22136784|gb|AAM91736.1| putative transcription factor IIA large subunit [Arabidopsis
thaliana]
gi|39545872|gb|AAR27999.1| TFIIA-L2 [Arabidopsis thaliana]
gi|332190008|gb|AEE28129.1| transcription initiation factor TFIIA large subunit [Arabidopsis
thaliana]
Length = 375
Score = 348 bits (892), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 235/410 (57%), Positives = 280/410 (68%), Gaps = 64/410 (15%)
Query: 3 TSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRTSA 38
T+ T VYI VIEDV++K IWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 39 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 98
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPTPLQTP+
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPL---------------- 104
Query: 99 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157
TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ SPW NPR
Sbjct: 105 --PTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKARPSPYMPPP----SPWTNPR 158
Query: 158 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D A Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSAHYQNGG-SIPQQDG 213
Query: 218 AGDAMSEI-FELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 276
A DA+ E FE +R+I +L SS KIPQ+DGP+PDPYD++LSTP
Sbjct: 214 ASDAIPEANFECAALRI------TYVGDRKIPRDLIGSSSKIPQVDGPMPDPYDEMLSTP 267
Query: 277 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQG 336
NIY+YQG NE++N TPAPN+IQ STP V ND EDD++ ++DDDELDD++ G
Sbjct: 268 NIYSYQGP-NEEFNEARTPAPNEIQTSTPVAVP-NDIIEDDEELLNEDDDDDELDDLESG 325
Query: 337 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
E++NTQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKATGEFDF
Sbjct: 326 EDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKATGEFDF 375
>gi|297843536|ref|XP_002889649.1| hypothetical protein ARALYDRAFT_470771 [Arabidopsis lyrata subsp.
lyrata]
gi|297335491|gb|EFH65908.1| hypothetical protein ARALYDRAFT_470771 [Arabidopsis lyrata subsp.
lyrata]
Length = 373
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 236/410 (57%), Positives = 277/410 (67%), Gaps = 66/410 (16%)
Query: 3 TSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRTSA 38
T+ T VYI VIEDV++K IWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 39 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 98
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 99 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K GR S PPPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSIYNIPTGSSDYPTPGNENGVNLDVK---GRSSP-YMPPPSPWANPR 158
Query: 158 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217
+DVNVAYV+GRDE +RG S+Q TQD +S+GKRKR+D A Y NGG +I QQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDL--LSSGKRKRDDSAAHYQNGG-SILQQDG 211
Query: 218 AGDAMSEI-FELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 276
A DA+ + FE +R I + SS KIPQ+DGP+PDPYD++LSTP
Sbjct: 212 ASDAIPKANFECTALRI------TNVGDRNIARDFICSSSKIPQVDGPMPDPYDEMLSTP 265
Query: 277 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQG 336
NIY+YQG NED+N TPAPN+IQ STP V QND EDD++ ++DDDELDD+D G
Sbjct: 266 NIYSYQGP-NEDFNEARTPAPNEIQTSTPVAV-QNDIVEDDEELLNEDDDDDELDDLDSG 323
Query: 337 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
E++NTQHLVLAQFDKVTRTKSRWKC LKDGIMHIN+KDILFNKATGEFDF
Sbjct: 324 EDMNTQHLVLAQFDKVTRTKSRWKCNLKDGIMHINDKDILFNKATGEFDF 373
>gi|297849042|ref|XP_002892402.1| transcription factor IIA large subunit [Arabidopsis lyrata subsp.
lyrata]
gi|297338244|gb|EFH68661.1| transcription factor IIA large subunit [Arabidopsis lyrata subsp.
lyrata]
Length = 375
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 237/413 (57%), Positives = 285/413 (69%), Gaps = 70/413 (16%)
Query: 3 TSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRTSA 38
T+ T VYI VIEDV++K IWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 39 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 98
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPTPLQTP+
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPTPLQTPL---------------- 104
Query: 99 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157
TPLPGTADNS+ YNIPTGSSDY TP +++G N + K GRPS PPPSPW NPR
Sbjct: 105 --PTPLPGTADNSSMYNIPTGSSDYTTPGTENGVNLDVK---GRPSP-YMPPPSPWANPR 158
Query: 158 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDG 213
Query: 218 AGD----AMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVL 273
A D A E + L ++ + +R++ + SS KIPQ+DGP+PDPYD++L
Sbjct: 214 ASDTIPKANFECYALRIT---------SVGDRKVPRDFFCSSSKIPQVDGPMPDPYDEML 264
Query: 274 STPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDV 333
STPNIY+YQG +ED+N TPAPN+IQ STP V QN+ EDD++ ++DDDELDD+
Sbjct: 265 STPNIYSYQGP-SEDFNEARTPAPNEIQTSTPVTV-QNNIVEDDEELLNEDDDDDELDDL 322
Query: 334 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ GE++NTQHLVLAQFDKVTRTKSRWKC LKDGIMHIN+KDILFNKATGEFDF
Sbjct: 323 ESGEDMNTQHLVLAQFDKVTRTKSRWKCNLKDGIMHINDKDILFNKATGEFDF 375
>gi|158828198|gb|ABW81076.1| TF1 [Cleome spinosa]
Length = 385
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 235/430 (54%), Positives = 275/430 (63%), Gaps = 92/430 (21%)
Query: 2 ATSATGMVYIRVIEDVISK----------------------------------------I 21
A++ T +YI VIEDVI+K I
Sbjct: 3 ASTTTSALYIHVIEDVINKVRDEFINNGGPGESVLNDLQGMFVSGFWFVSSTWMLVCPAI 62
Query: 22 WEMKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPL 78
WEMKM+ AGVI I+R+SAPK P PGGP+T HDLNVPYEG EEYETPTAE+LFPPTPL
Sbjct: 63 WEMKMMHAGVICGPIERSSAPK-PIPGGPLT--HDLNVPYEGAEEYETPTAEMLFPPTPL 119
Query: 79 QTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKS 137
TP+ GTADNS+ YNIPTGSS YPTPAS++G + K
Sbjct: 120 PTPLP----------------------GTADNSSMYNIPTGSSGYPTPASENGNVPDLKG 157
Query: 138 GNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRK 197
P NPR +DVNVAYV G++ A+RG S+Q LTQDFF S+ KRK
Sbjct: 158 SPSPYMPSSSPW----SNPR----LDVNVAYVNGQNVAERGNSNQQLTQDFFVPSSVKRK 209
Query: 198 REDFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTA-NREIFANLASSSV 256
REDFPAQY NGG +IPQQDGA DA+S+ E E SVT +R + N SSS+
Sbjct: 210 REDFPAQYPNGG-SIPQQDGANDAVSKGTEGE---------SVTNEFSRNVSGNFISSSL 259
Query: 257 KIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAED 316
KIPQ+DGP+PDPYDD+LSTPNIY+YQGV NEDYN TPA N+ QAST + ED
Sbjct: 260 KIPQVDGPMPDPYDDILSTPNIYSYQGV-NEDYNEAKTPALNETQAST---LVAAQNDED 315
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
DD+ ++DDDELDD+D GE++NTQHLVLAQFDKV+RTKSRWKC LKDGIMHIN+KDIL
Sbjct: 316 DDELLNEDDDDDELDDLDSGEDVNTQHLVLAQFDKVSRTKSRWKCTLKDGIMHINDKDIL 375
Query: 377 FNKATGEFDF 386
FNKATGEFDF
Sbjct: 376 FNKATGEFDF 385
>gi|8778543|gb|AAF79551.1|AC022464_9 F22G5.14 [Arabidopsis thaliana]
Length = 488
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 227/422 (53%), Positives = 277/422 (65%), Gaps = 76/422 (18%)
Query: 3 TSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRTSA 38
T+ T VYI VIEDV++K IWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 39 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 98
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 99 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ S PPPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKA----RPSPYMPPPSPWTNPR 158
Query: 158 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217
+DVNVAYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDG
Sbjct: 159 ----LDVNVAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDG 213
Query: 218 AGDAMSEIF-------ELEVSEFPGRQDSVTT-ANREIFANLASSSVKIPQLDGPIPDPY 269
AGDA+ E + + F +T+ +R++ + SSS KIPQ+DGP+PDPY
Sbjct: 214 AGDAIPEYLVDTPDWSTILQANFECDAFRITSIGDRKVPRDFFSSSSKIPQVDGPMPDPY 273
Query: 270 DDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDE 329
D++LSTPNIY+YQG +E++N TPAPN+IQ STP V QND EDD++ ++DDDE
Sbjct: 274 DEMLSTPNIYSYQG-PSEEFNEARTPAPNEIQTSTPVAV-QNDIIEDDEELLNEDDDDDE 331
Query: 330 LDDVDQGEELNTQHLVLAQFDK-----------VTRTKSRWKCALKDGIMHINNKDILFN 378
LDD++ GE++NTQHLVLAQFDK VTRTKSRWKC+LKDGIMHIN+KDILFN
Sbjct: 332 LDDLESGEDMNTQHLVLAQFDKVMTLLYSQVLDVTRTKSRWKCSLKDGIMHINDKDILFN 391
Query: 379 KA 380
K
Sbjct: 392 KV 393
>gi|413948830|gb|AFW81479.1| hypothetical protein ZEAMMB73_123227 [Zea mays]
Length = 437
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 214/419 (51%), Positives = 253/419 (60%), Gaps = 75/419 (17%)
Query: 9 VYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTSAPKQPAPG 45
VYI VI+DVISK+ WEMKM+ G I IDRT A G
Sbjct: 53 VYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTKAAAASVGG 112
Query: 46 --GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGST 102
G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 113 TTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT------------- 159
Query: 103 PLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN---GRPSSYM--PPPPSPWMNP 156
D + YNIPTG SDY P+P SD + G PS YM PPPSPWMN
Sbjct: 160 ------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMFLQPPPSPWMNQ 213
Query: 157 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 216
RP L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q +G + +PQQD
Sbjct: 214 RP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQLPSGSF-VPQQD 271
Query: 217 GAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTP 276
G+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D P
Sbjct: 272 GSAD---QIVEFVVSKENANQLWSSIGNKLETPTKTITPV-IPQRDG-IQDNYNDQFFFP 326
Query: 277 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVT--------QNDAAEDDDDEPLNENDDD 328
GV EDYN A + +A TPAV T +D +DDD+ PLNE+DD+
Sbjct: 327 ------GVPTEDYNTPGESA--EYRAPTPAVGTPKQRNDAGDDDNDDDDDEPPLNEDDDE 378
Query: 329 ELDDVDQGE-ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
ELDD++QGE E NTQHLVLAQFDKV+RTK+RWKC LKDGIMH+N +D+LFNKATGEFDF
Sbjct: 379 ELDDLEQGEDEPNTQHLVLAQFDKVSRTKNRWKCTLKDGIMHLNGRDVLFNKATGEFDF 437
>gi|226495785|ref|NP_001148644.1| transcription factor/ transcription initiation factor [Zea mays]
gi|195621078|gb|ACG32369.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 390
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 215/424 (50%), Positives = 255/424 (60%), Gaps = 72/424 (16%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTS 37
MA+S VYI VI+DVISK+ WEMKM+ G I IDRT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTK 60
Query: 38 APKQPAPG--GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 94
A G G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAASVGGTTGTTAPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 95 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 151
D + YNIPTG SDY P+P SD +G S PPPS
Sbjct: 116 --------------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMPPPS 161
Query: 152 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 211
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDFF MS+GKRKR+++P Q +G +
Sbjct: 162 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFFMMSSGKRKRDEYPGQLPSGSF- 219
Query: 212 IPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD 271
+PQQDG+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D
Sbjct: 220 VPQQDGSAD---QIVEFVVSKENVNQLWSSIGNKLETPTKTITPV-IPQRDG-IQDNYND 274
Query: 272 VLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVT--------QNDAAEDDDDEPLN 323
P GV EDYN A + +A TPAV T +D +DDD+ PLN
Sbjct: 275 QFFFP------GVPTEDYNTPGESA--EYRAPTPAVGTPKQRNDAGDDDNDDDDDEPPLN 326
Query: 324 ENDDDELDDVDQGE-ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 382
E+DD+ELDD++QGE E NTQHLVLAQFDKV+RTK+RWKC LKDGIMH+N +D+LFNKATG
Sbjct: 327 EDDDEELDDLEQGEDEPNTQHLVLAQFDKVSRTKNRWKCXLKDGIMHLNGRDVLFNKATG 386
Query: 383 EFDF 386
EFDF
Sbjct: 387 EFDF 390
>gi|223973831|gb|ACN31103.1| unknown [Zea mays]
Length = 390
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 214/424 (50%), Positives = 254/424 (59%), Gaps = 72/424 (16%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTS 37
MA+S VYI VI+DVISK+ WEMKM+ G I IDRT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTK 60
Query: 38 APKQPAPG--GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 94
A G G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAASVGGTTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 95 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 151
D + YNIPTG SDY P+P SD +G S PPPS
Sbjct: 116 --------------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMPPPS 161
Query: 152 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 211
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q +G +
Sbjct: 162 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQLPSGSF- 219
Query: 212 IPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD 271
+PQQDG+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D
Sbjct: 220 VPQQDGSAD---QIVEFVVSKENANQLWSSIGNKLETPTKTITPV-IPQRDG-IQDNYND 274
Query: 272 VLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVT--------QNDAAEDDDDEPLN 323
P GV EDYN A + +A TPAV T +D +DDD+ PLN
Sbjct: 275 QFFFP------GVPTEDYNTPGESA--EYRAPTPAVGTPKQRNDAGDDDNDDDDDEPPLN 326
Query: 324 ENDDDELDDVDQGE-ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 382
E+DD+ELDD++QGE E NTQHLVLAQFDKV+RTK+RWKC LKDGIMH+N +D+LFNKATG
Sbjct: 327 EDDDEELDDLEQGEDEPNTQHLVLAQFDKVSRTKNRWKCTLKDGIMHLNGRDVLFNKATG 386
Query: 383 EFDF 386
EFDF
Sbjct: 387 EFDF 390
>gi|1429226|emb|CAA67368.1| TFIIA [Arabidopsis thaliana]
Length = 375
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 204/409 (49%), Positives = 254/409 (62%), Gaps = 62/409 (15%)
Query: 3 TSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRTSA 38
T+ T VYI VIEDV++K IWE KM+QAGV+ I+R+SA
Sbjct: 4 TTTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSA 63
Query: 39 PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPL 98
K P PGGP+T HDLNVPYEGTEEYETPTAE+LFPPT
Sbjct: 64 QK-PTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPPT------------------PLQT 102
Query: 99 PGSTPLPGTADNST-YNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157
P TPLPGTADNS+ YNIPTGSSDYPTP +++G N + K+ PPSPW NPR
Sbjct: 103 PLPTPLPGTADNSSMYNIPTGSSDYPTPGTENGVNIDVKARPSPYMP----PPSPWTNPR 158
Query: 158 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217
+DVNVAYV+GRDE ++ T L + + G + +
Sbjct: 159 ----LDVNVAYVDGRDEPEKETLTSSLRRIYLCHPLGNENVMILLDIIKMVDLYLNRMVQ 214
Query: 218 AGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPN 277
A ++ FE + + +R++ + SSS KIPQ+DGP+PDPYD++LSTPN
Sbjct: 215 AMLSLRPNFECDAFRI------TSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPN 268
Query: 278 IYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGE 337
IY+YQG +E++N TPAPN+ Q STP V QND EDD++ ++DDDELDD++ GE
Sbjct: 269 IYSYQGP-SEEFNEARTPAPNEYQTSTPVAV-QNDIIEDDEELLNEDDDDDELDDLESGE 326
Query: 338 ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++NTQHLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 327 DMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 375
>gi|115463003|ref|NP_001055101.1| Os05g0292200 [Oryza sativa Japonica Group]
gi|113578652|dbj|BAF17015.1| Os05g0292200 [Oryza sativa Japonica Group]
gi|125551677|gb|EAY97386.1| hypothetical protein OsI_19309 [Oryza sativa Indica Group]
gi|215694500|dbj|BAG89493.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 394
Score = 284 bits (727), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 215/432 (49%), Positives = 260/432 (60%), Gaps = 84/432 (19%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTS 37
MA+S VYI VI+DVISK+ WEMKM+ G I IDR+
Sbjct: 1 MASSNVSTVYISVIDDVISKVRDDFISYGVGDAVLNELQALWEMKMLHCGAISGTIDRSK 60
Query: 38 APKQPAPG----GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPL 92
A P+ G G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAPAPSAGTPGAGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT--- 117
Query: 93 PGSTPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSG----NGRPSSYMP 147
D YNIPTG SDY P+P SD N A +G GRPS YMP
Sbjct: 118 ----------------DAGMYNIPTGPSDYAPSPISDVR-NGMAMNGADPKTGRPSPYMP 160
Query: 148 PPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHN 207
PP WM RP L VDVNVAYVE R++ DR LT+DF MS+GKRKR+++P Q +
Sbjct: 161 PPSP-WMTQRP-LGVDVNVAYVENREDPDRTGQPPQLTKDFLMMSSGKRKRDEYPGQLPS 218
Query: 208 GGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVK------IPQL 261
G + +PQQDG+ D +I E VS+ +Q + N++ A SS+ + IPQ
Sbjct: 219 GSF-VPQQDGSAD---QIVEFVVSKDNAQQLWSSIVNKQGTATKESSTKETIIAPTIPQR 274
Query: 262 DGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPA-PNDIQASTPAVVT---QNDAAEDD 317
DG D Y+D + +QGV EDYN TP ++ +A TPAV T +ND DD
Sbjct: 275 DGM--DDYNDP------FYFQGVPTEDYN---TPGESSEYRAPTPAVGTPKPRNDVG-DD 322
Query: 318 DDEPLNENDDDELDDVD--QGE-ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
D+ PLNE+DDD+ + D QGE E NTQHLVLAQFDKVTRTK+RWKC LKDGIMH+N +D
Sbjct: 323 DEPPLNEDDDDDDELDDLEQGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRD 382
Query: 375 ILFNKATGEFDF 386
+LFNKATGEFDF
Sbjct: 383 VLFNKATGEFDF 394
>gi|413948829|gb|AFW81478.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 434
Score = 283 bits (725), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 211/416 (50%), Positives = 250/416 (60%), Gaps = 72/416 (17%)
Query: 9 VYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTSAPKQPAPG 45
VYI VI+DVISK+ WEMKM+ G I IDRT A G
Sbjct: 53 VYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTKAAAASVGG 112
Query: 46 --GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGST 102
G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 113 TTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT------------- 159
Query: 103 PLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPSPWMNPRPP 159
D + YNIPTG SDY P+P SD +G S PPPSPWMN RP
Sbjct: 160 ------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMPPPSPWMNQRP- 212
Query: 160 LSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAG 219
L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q +G + +PQQDG+
Sbjct: 213 LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQLPSGSF-VPQQDGSA 271
Query: 220 DAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIY 279
D +I E VS+ Q + N+ + V IPQ DG I D Y+D P
Sbjct: 272 D---QIVEFVVSKENANQLWSSIGNKLETPTKTITPV-IPQRDG-IQDNYNDQFFFP--- 323
Query: 280 NYQGVVNEDYNIVNTPAPNDIQASTPAVVT--------QNDAAEDDDDEPLNENDDDELD 331
GV EDYN A + +A TPAV T +D +DDD+ PLNE+DD+ELD
Sbjct: 324 ---GVPTEDYNTPGESA--EYRAPTPAVGTPKQRNDAGDDDNDDDDDEPPLNEDDDEELD 378
Query: 332 DVDQGE-ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
D++QGE E NTQHLVLAQFDKV+RTK+RWKC LKDGIMH+N +D+LFNKATGEFDF
Sbjct: 379 DLEQGEDEPNTQHLVLAQFDKVSRTKNRWKCTLKDGIMHLNGRDVLFNKATGEFDF 434
>gi|357134151|ref|XP_003568681.1| PREDICTED: uncharacterized protein LOC100827776 [Brachypodium
distachyon]
Length = 400
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 212/436 (48%), Positives = 259/436 (59%), Gaps = 86/436 (19%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTS 37
MA+ VYI VI+DVI+K+ WEMKM+Q G I IDR
Sbjct: 1 MASGNVSTVYISVIDDVIAKVREEFISYGVGDAVLNELQALWEMKMLQCGAISGNIDRAR 60
Query: 38 APKQPAPGGPIT-------PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGS 89
AP P GG PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 APAAPGAGGGGAPGAGSTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT 120
Query: 90 TPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN----GRPSS 144
+ YNIPTG SDY P+P SD N A +G+ GRPS
Sbjct: 121 -------------------EAGMYNIPTGPSDYAPSPISDMR-NGMAMNGSDPKTGRPSP 160
Query: 145 YMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQ 204
YM PP SPWMN RP L VDVNVAY E R++ DR +T+DF MS+GKRKR+++P Q
Sbjct: 161 YMQPP-SPWMNQRP-LGVDVNVAYEETREDPDRAVQPPQMTKDFLMMSSGKRKRDEYPGQ 218
Query: 205 YHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVK------I 258
+G + +PQQDG D EI E VS+ +Q + N++ A ASS+ + +
Sbjct: 219 LPSGSF-MPQQDGNSD---EIVEFVVSKDNAQQVWNSIMNKQESATKASSTQETTMTQVL 274
Query: 259 PQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPA-PNDIQASTPAVVT---QNDAA 314
PQ DG I D Y+D P GV EDYN TP ++ + TPAV T +ND
Sbjct: 275 PQRDG-IQDEYNDQFFFP------GVPTEDYN---TPGESSEYRTPTPAVATPKPRNDTG 324
Query: 315 EDDDDEP-LNENDDDELDDV---DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
+DDDDEP LNE+DDD+ + + +E NTQHLVLAQFDKVTRTK+RWKC LKDGIMH+
Sbjct: 325 DDDDDEPPLNEDDDDDDELDDLEHEPDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHL 384
Query: 371 NNKDILFNKATGEFDF 386
N +D+LFNKA+GEFDF
Sbjct: 385 NGRDVLFNKASGEFDF 400
>gi|413944877|gb|AFW77526.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 438
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 212/427 (49%), Positives = 249/427 (58%), Gaps = 75/427 (17%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTS 37
MA+S VYI VI+DVISK+ WEMKM+ G I I+RT
Sbjct: 46 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIERTK 105
Query: 38 APKQPAPGGPIT--PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 94
A A G T PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 106 AAAASAGGTSGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 160
Query: 95 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 151
D YNIPTG SDY P+P SD +G S PPPS
Sbjct: 161 --------------DTGMYNIPTGPSDYAPSPISDIRNGMTINGADPKAGRPSPYMPPPS 206
Query: 152 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 211
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF TMS+GKRKR+++P Q +G +
Sbjct: 207 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLTMSSGKRKRDEYPGQLPSGSF- 264
Query: 212 IPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD 271
+PQQDG+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D
Sbjct: 265 VPQQDGSAD---QIVEFVVSKENANQHWSSIINKLETPTKTVTPV-IPQCDG-IQDDYND 319
Query: 272 VLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVT---------QNDAAEDDDDEPL 322
P GV EDYN A + +A TPAV T ND +DD++ PL
Sbjct: 320 QFFFP------GVPTEDYNTPGESA--EYRAPTPAVGTPKPRNDAGDDNDDDDDDEEPPL 371
Query: 323 NENDDDELDDVDQGEEL---NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
NE+DDD+ D D E NTQHLVLAQFDKVTRTK+RWKC LKDGIMH+N +D+LFNK
Sbjct: 372 NEDDDDDDDLDDLEEGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNK 431
Query: 380 ATGEFDF 386
ATGEFDF
Sbjct: 432 ATGEFDF 438
>gi|226504288|ref|NP_001148522.1| LOC100282138 [Zea mays]
gi|195619992|gb|ACG31826.1| transcription factor/ transcription initiation factor [Zea mays]
Length = 393
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 212/427 (49%), Positives = 249/427 (58%), Gaps = 75/427 (17%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTS 37
MA+S VYI VI+DVISK+ WEMKM+ G I I+RT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIERTK 60
Query: 38 APKQPAPGGPIT--PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 94
A A G T PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAASAGGTSGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 95 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 151
D YNIPTG SDY P+P SD +G S PPPS
Sbjct: 116 --------------DTGMYNIPTGPSDYAPSPISDIRNGMTINGADPKAGRPSPYMPPPS 161
Query: 152 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 211
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF TMS+GKRKR+++P Q +G +
Sbjct: 162 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLTMSSGKRKRDEYPGQLPSGSF- 219
Query: 212 IPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD 271
+PQQDG+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D
Sbjct: 220 VPQQDGSAD---QIVEFVVSKENANQHWSSIINKLETPTKTVTPV-IPQCDG-IQDDYND 274
Query: 272 VLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVT---------QNDAAEDDDDEPL 322
P GV EDYN A + +A TPAV T ND +DD++ PL
Sbjct: 275 QFFFP------GVPTEDYNTPGESA--EYRAPTPAVGTPKPRNDAGDDNDDDDDDEEPPL 326
Query: 323 NENDDDELDDVDQGEEL---NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
NE+DDD+ D D E NTQHLVLAQFDKVTRTK+RWKC LKDGIMH+N +D+LFNK
Sbjct: 327 NEDDDDDDDLDDLEEGEDEPNTQHLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNK 386
Query: 380 ATGEFDF 386
ATGEFDF
Sbjct: 387 ATGEFDF 393
>gi|147856331|emb|CAN83895.1| hypothetical protein VITISV_039114 [Vitis vinifera]
Length = 630
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 150/252 (59%), Positives = 165/252 (65%), Gaps = 48/252 (19%)
Query: 3 TSATGMVYIRVIEDVISK---------------------IWEMKMIQAGVI---IDRTSA 38
+S T VY+ VIEDVI+K IWEMKM+QAGV+ I+R+ A
Sbjct: 4 SSMTSTVYVSVIEDVINKERFCLAFDWIVWEIGSIVFDLIWEMKMVQAGVVTGPIERSXA 63
Query: 39 PKQPAPG-GPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 97
PKQ + P PVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG
Sbjct: 64 PKQTSGAPAPTPPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG--------- 114
Query: 98 LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157
DNS YNIPTG ++YP A D GG T+ KSG P SPWM R
Sbjct: 115 ---------MGDNSMYNIPTGPTEYPA-AQDGGGATDMKSGRPPSYMPPP---SPWMQQR 161
Query: 158 PPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDG 217
PPLSVDVNVAYVEGRDE DRG S QPLTQDFF MS+GKRKREDFP+QYH GY IPQQDG
Sbjct: 162 PPLSVDVNVAYVEGRDEGDRGNSQQPLTQDFFMMSSGKRKREDFPSQYHTSGY-IPQQDG 220
Query: 218 AGDAMSEIFELE 229
AGD E+FE+E
Sbjct: 221 AGDPAPEVFEVE 232
Score = 224 bits (572), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/144 (84%), Positives = 128/144 (88%), Gaps = 1/144 (0%)
Query: 237 QDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPA 296
D + ANREIF +A S V+IPQLDGPIPDPY+DVLSTPNIYNYQGVVNEDYNIVNTPA
Sbjct: 319 HDILPKANREIFPQVAGSYVRIPQLDGPIPDPYEDVLSTPNIYNYQGVVNEDYNIVNTPA 378
Query: 297 PNDIQASTPAVVTQNDAAEDDDDE-PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRT 355
PNDIQA TPAV QND +DDDDE PLNENDDD+LDDV QGEELNTQHLVLAQFDKVTRT
Sbjct: 379 PNDIQAGTPAVGIQNDVGDDDDDEPPLNENDDDDLDDVXQGEELNTQHLVLAQFDKVTRT 438
Query: 356 KSRWKCALKDGIMHINNKDILFNK 379
KS+WKC LKDGIMHINNKDILFNK
Sbjct: 439 KSKWKCTLKDGIMHINNKDILFNK 462
>gi|124360553|gb|ABD33143.2| Transcription factor IIA, helical [Medicago truncatula]
Length = 317
Score = 258 bits (659), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 153/259 (59%), Positives = 169/259 (65%), Gaps = 53/259 (20%)
Query: 1 MATSATGMVYIRVIEDVISK----------------------IWEMKMIQAGVI---IDR 35
MA S T VYI VIEDV+ K IWE K IQAG + I+R
Sbjct: 1 MAASTTSQVYIDVIEDVMVKVRDEFVNTGASPGDEVLRELQAIWESKCIQAGAVLGPIER 60
Query: 36 TSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGS 95
+ +P PGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG PG
Sbjct: 61 NTGVNRPMPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPG----PGE 116
Query: 96 TPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPW-- 153
TP YNIPTG SDY + +D+GGN + K G ++M PPPSPW
Sbjct: 117 TP--------------NYNIPTGPSDY-SSGNDAGGNADVKGGR---QAFM-PPPSPWMN 157
Query: 154 MNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIP 213
MN RPPL DVNVAYVEGRDEADRG S+QP+TQDFFTM+ GKRKR D P Y GGY IP
Sbjct: 158 MNQRPPL--DVNVAYVEGRDEADRGASNQPMTQDFFTMTGGKRKRNDLPPPYDAGGY-IP 214
Query: 214 QQDGAGDAMSEIFELEVSE 232
QQDGAGDA+S FE+E E
Sbjct: 215 QQDGAGDAVSGDFEIESRE 233
>gi|343172888|gb|AEL99147.1| transcription initiation factor TFIIA large subunit, partial
[Silene latifolia]
Length = 278
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 160/291 (54%), Positives = 182/291 (62%), Gaps = 38/291 (13%)
Query: 48 ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGT 107
+ PVHDLNVPYEGTEEYETPTAE+LFPPTPLQTPIQTPLPG T
Sbjct: 14 VAPVHDLNVPYEGTEEYETPTAEMLFPPTPLQTPIQTPLPG------------------T 55
Query: 108 ADNST-YNIPTGSSDYPTPASDSGG-------NTEAKSGNGRPSSYMPPPPSPWMNPRPP 159
DNS+ YNIPTG N E + +P + R
Sbjct: 56 VDNSSMYNIPTGFQIIQLRTRMKSVVFIMLILNLELEGLVFTCHHLLP-----GLIKRSS 110
Query: 160 LSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAG 219
+ VDVNVAYVE R+E DR ++ Q TQDF T +GKRKR+D QY GGY IPQQDGAG
Sbjct: 111 VGVDVNVAYVENREEGDRRSAQQG-TQDFLTGPSGKRKRDDVLPQYQAGGY-IPQQDGAG 168
Query: 220 DAMSEIFELEV--SEFPGRQDSVTTAN-REIFANLASSSVKIPQLDGPIPDPYDDVLSTP 276
DA EIFELE+ S+ GR+ N + + S KIPQLDGPIPDPYDD+LSTP
Sbjct: 169 DAAPEIFELEIVQSKTSGRKGIANFINGKGHMWHTEGISSKIPQLDGPIPDPYDDILSTP 228
Query: 277 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE-PLNEND 326
NIYNYQG VNEDYN+VNTPAP D+QA TP + QND + DDDDE PLNEND
Sbjct: 229 NIYNYQGAVNEDYNVVNTPAP-DMQAGTPVPLAQNDVSNDDDDEPPLNEND 278
>gi|343172890|gb|AEL99148.1| transcription initiation factor TFIIA large subunit, partial
[Silene latifolia]
Length = 278
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 161/291 (55%), Positives = 181/291 (62%), Gaps = 38/291 (13%)
Query: 48 ITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGT 107
+ PVHDLNVPYEGTEEYETPTAE+LFPPTPLQTPIQTPLPG T
Sbjct: 14 VAPVHDLNVPYEGTEEYETPTAEMLFPPTPLQTPIQTPLPG------------------T 55
Query: 108 ADNST-YNIPTGSSDYPTPASDSGG-------NTEAKSGNGRPSSYMPPPPSPWMNPRPP 159
DNS+ YNIPTG N E + +P + R
Sbjct: 56 VDNSSMYNIPTGFQIIQLRTRMKSVVFIMLILNLELEGLVFTCHHLLP-----GLIKRSS 110
Query: 160 LSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAG 219
+ VDVNVAYVE R+E DR S Q TQDF T +GKRKR+D QY GGY IPQQDGAG
Sbjct: 111 VGVDVNVAYVENREEGDR-RSLQQGTQDFLTGPSGKRKRDDVLPQYQAGGY-IPQQDGAG 168
Query: 220 DAMSEIFELEV--SEFPGRQDSVTTAN-REIFANLASSSVKIPQLDGPIPDPYDDVLSTP 276
DA EIFELE+ S+ GR+ N + + S KIPQLDGPIPDPYDD+LSTP
Sbjct: 169 DAAPEIFELEIVQSKTSGRKGIANFINGKGHMWHTEGISSKIPQLDGPIPDPYDDILSTP 228
Query: 277 NIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE-PLNEND 326
NIYNYQG VNEDYN+VNTPAP D+QA TP + QND + DDDDE PLNEND
Sbjct: 229 NIYNYQGAVNEDYNVVNTPAP-DMQAGTPVPLAQNDVSNDDDDEPPLNEND 278
>gi|116789263|gb|ABK25179.1| unknown [Picea sitchensis]
Length = 398
Score = 253 bits (647), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 178/390 (45%), Positives = 224/390 (57%), Gaps = 67/390 (17%)
Query: 18 ISKIWEMKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFP 74
+ +WE+KM+Q G I ID S PITPVHDLNVPYE TEEYETPTAE+LFP
Sbjct: 55 VQALWELKMMQNGAIQGPIDHASNSALRGANAPITPVHDLNVPYEPTEEYETPTAEMLFP 114
Query: 75 PTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYN-IPTGSSDYPTPASDSGGNT 133
PTP+QTP+QTPLPG TA+ Y P G + P + G +
Sbjct: 115 PTPVQTPMQTPLPG------------------TAEPVMYQYFPPGPGE-PLATPELGIDP 155
Query: 134 EAKSGNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSA 193
EAK G RP+ YM PP + WM+ +P L VDVN+AY E RDE G S P+T+DFFT+S+
Sbjct: 156 EAKIG--RPAPYMQPPAN-WMSQKP-LGVDVNIAYEEERDEMAAGISQPPITKDFFTLSS 211
Query: 194 GKRKREDFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPGRQ-------DSVTTANRE 246
GKRKRED P Y GGY IPQQDGAGD E+ + + EF ++ D R+
Sbjct: 212 GKRKREDHPPNYLPGGY-IPQQDGAGDFSWELVQSKEVEFANQRLTQNCSMDGSMFEKRQ 270
Query: 247 IFANLASSSVK-------IPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPND 299
+ L ++ VK IPQ+DG D++ ST V +E Y
Sbjct: 271 MSDPLIAALVKAKCLSLEIPQVDGV----NDNLDST--------VADEGY---------- 308
Query: 300 IQASTPAVVTQNDAAED---DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTK 356
I+A+ ND A +D+E LN+NDDD D E+ LVLAQF+KV+RTK
Sbjct: 309 IEATDQEQQALNDVATSKVSEDEEALNDNDDDPDDLDLTNEDPKIDDLVLAQFEKVSRTK 368
Query: 357 SRWKCALKDGIMHINNKDILFNKATGEFDF 386
+RWKC LKDG+MH+N+KDILF+KATGEFDF
Sbjct: 369 NRWKCILKDGVMHLNHKDILFSKATGEFDF 398
>gi|17065294|gb|AAL32801.1| similar to TFIIA [Arabidopsis thaliana]
gi|30023680|gb|AAP13373.1| At1g07480 [Arabidopsis thaliana]
Length = 218
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 137/222 (61%), Positives = 170/222 (76%), Gaps = 10/222 (4%)
Query: 166 VAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEI 225
+AYV+GRDE +RG S+Q TQD F S+GKRKR+D Y NGG +IPQQDGAGDA+ E
Sbjct: 6 LAYVDGRDEPERGNSNQQFTQDLFVPSSGKRKRDDSSGHYQNGG-SIPQQDGAGDAIPEA 64
Query: 226 -FELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGV 284
FE + + +R++ + SSS KIPQ+DGP+PDPYD++LSTPNIY+YQG
Sbjct: 65 NFECDAFRI------TSIGDRKVPRDFFSSSSKIPQVDGPMPDPYDEMLSTPNIYSYQGP 118
Query: 285 VNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHL 344
+E++N TPAPN+IQ STP V QND EDD++ ++DDDELDD++ GE++NTQHL
Sbjct: 119 -SEEFNEARTPAPNEIQTSTP-VAVQNDIIEDDEELLNEDDDDDELDDLESGEDMNTQHL 176
Query: 345 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
VLAQFDKVTRTKSRWKC+LKDGIMHIN+KDILFNKA GEFDF
Sbjct: 177 VLAQFDKVTRTKSRWKCSLKDGIMHINDKDILFNKAAGEFDF 218
>gi|222630980|gb|EEE63112.1| hypothetical protein OsJ_17920 [Oryza sativa Japonica Group]
Length = 331
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 184/404 (45%), Positives = 229/404 (56%), Gaps = 91/404 (22%)
Query: 1 MATSATGMVYIRVIEDVISKIWEMKMIQAGVIIDRTSAPKQPAPGGPITPVHDLNVPYEG 60
MA+S VYI VI+DVISK+ + I GV G + +++L
Sbjct: 1 MASSNVSTVYISVIDDVISKVRD-DFISYGV-------------GDAV--LNELQA---- 40
Query: 61 TEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSS 120
TPLQTPIQTPLPG+ D YNIPTG S
Sbjct: 41 ---------------TPLQTPIQTPLPGT-------------------DAGMYNIPTGPS 66
Query: 121 DY-PTPASDSGGNTEAKSG----NGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEA 175
DY P+P SD N A +G GRPS YMPPP WM RP L VDVNVAYVE R++
Sbjct: 67 DYAPSPISDVR-NGMAMNGADPKTGRPSPYMPPPSP-WMTQRP-LGVDVNVAYVENREDP 123
Query: 176 DRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQDGAGDAMSEIFELEVSEFPG 235
DR LT+DF MS+GKRKR+++P Q +G + +PQQDG+ D +I E VS+
Sbjct: 124 DRTGQPPQLTKDFLMMSSGKRKRDEYPGQLPSGSF-VPQQDGSAD---QIVEFVVSKDNA 179
Query: 236 RQDSVTTANREIFANLASSSVK------IPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDY 289
+Q + N++ A SS+ + IPQ DG D Y+D + +QGV EDY
Sbjct: 180 QQLWSSIVNKQGTATKESSTKETIIAPTIPQRDGM--DDYNDP------FYFQGVPTEDY 231
Query: 290 NIVNTPA-PNDIQASTPAVVT---QNDAAEDDDDEPLNENDDDELDDVD--QGE-ELNTQ 342
N TP ++ +A TPAV T +ND DDD+ PLNE+DDD+ + D QGE E NTQ
Sbjct: 232 N---TPGESSEYRAPTPAVGTPKPRNDVG-DDDEPPLNEDDDDDDELDDLEQGEDEPNTQ 287
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
HLVLAQFDKVTRTK+RWKC LKDGIMH+N +D+LFNKATGEFDF
Sbjct: 288 HLVLAQFDKVTRTKNRWKCTLKDGIMHLNGRDVLFNKATGEFDF 331
>gi|413944876|gb|AFW77525.1| hypothetical protein ZEAMMB73_875019 [Zea mays]
Length = 322
Score = 194 bits (492), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 145/302 (48%), Positives = 171/302 (56%), Gaps = 55/302 (18%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTS 37
MA+S VYI VI+DVISK+ WEMKM+ G I I+RT
Sbjct: 46 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIERTK 105
Query: 38 APKQPAPGGPIT--PVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 94
A A G T PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 106 AAAASAGGTSGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 160
Query: 95 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASD--SGGNTEAKSGNGRPSSYMPPPPS 151
D YNIPTG SDY P+P SD +G S PPPS
Sbjct: 161 --------------DTGMYNIPTGPSDYAPSPISDIRNGMTINGADPKAGRPSPYMPPPS 206
Query: 152 PWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYN 211
PWMN RP L VDVNVAYVEGR++ DRG QPLTQDF TMS+GKRKR+++P Q +G +
Sbjct: 207 PWMNQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLTMSSGKRKRDEYPGQLPSGSF- 264
Query: 212 IPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDD 271
+PQQDG+ D +I E VS+ Q + N+ + V IPQ DG I D Y+D
Sbjct: 265 VPQQDGSAD---QIVEFVVSKENANQHWSSIINKLETPTKTVTPV-IPQCDG-IQDDYND 319
Query: 272 VL 273
VL
Sbjct: 320 VL 321
>gi|242062660|ref|XP_002452619.1| hypothetical protein SORBIDRAFT_04g029230 [Sorghum bicolor]
gi|241932450|gb|EES05595.1| hypothetical protein SORBIDRAFT_04g029230 [Sorghum bicolor]
Length = 229
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 121/234 (51%), Positives = 137/234 (58%), Gaps = 51/234 (21%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTS 37
MA+S VYI VI+DVISK+ WEMKM+ G I IDRT
Sbjct: 1 MASSNVSTVYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTK 60
Query: 38 APKQPAPG--GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 94
A A G G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 61 AAAPSAGGTTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT----- 115
Query: 95 STPLPGSTPLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN---GRPSSYMPPPP 150
D YNIPTG SDY P+P SD + GRPS YMPPP
Sbjct: 116 --------------DTGMYNIPTGPSDYAPSPISDIRNGMAINGADPKAGRPSPYMPPPS 161
Query: 151 SPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQ 204
WM+ RP L VDVNVAYVEGR++ DRG QPLTQDF MS+GKRKR+++P Q
Sbjct: 162 P-WMSQRP-LGVDVNVAYVEGREDPDRGVQPQPLTQDFLMMSSGKRKRDEYPGQ 213
>gi|168046540|ref|XP_001775731.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672883|gb|EDQ59414.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 400
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 149/437 (34%), Positives = 202/437 (46%), Gaps = 100/437 (22%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVIIDRTSAPK 40
MA S + VY+ V+EDVI+ + WE+K++Q+G I + ++
Sbjct: 13 MAMSVSN-VYLHVVEDVINNVRTDFQSEGVDDNILNELQSLWELKLVQSGAIQEPSAHDA 71
Query: 41 QPA----PGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
PA P TPV DLN P EEYE P F P T + P+ PG
Sbjct: 72 NPAAKPIPQTVATPVLDLNGPV-AAEEYEAPPN--YFSQAPASTSSREPVVFQYMPPG-- 126
Query: 97 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 156
P S L +SG ++ GNG PSSYM P S WMN
Sbjct: 127 PREESLQL-----------------------NSGHQPASRIGNGAPSSYMQQPAS-WMNQ 162
Query: 157 RPPLSVDVNVAYVEGRDEADRGTSHQ--------PLTQDFFTMSAGKRKREDFPAQYHNG 208
+ V+VN+ D G + P+T+DF T+S GKRK ++ + G
Sbjct: 163 K-HRGVEVNMNETYEERAVDNGLAQGLNTAQGAPPITKDFLTISTGKRKHDEISS----G 217
Query: 209 GYNIPQQDGAGDAMS-----EIFELEVSEFP-GR----------QDSVTTANREIFANLA 252
Y IPQ+DGA D E E ++E GR +++ A +
Sbjct: 218 NYYIPQRDGAADVELSTLGPEALERWIAEKSVGRNEDLRLWSLYRENADAAIEHLIHAKF 277
Query: 253 SSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQND 312
S + QLDG + D YD YQGV EDY N P +D+ A +V ++
Sbjct: 278 SQKLSSSQLDG-VDDEYD---------GYQGVA-EDY---NEPEEDDLSAPEAKLVVNSE 323
Query: 313 AAEDDDDEP---LNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
E + EP ++++DD D +E T HLVLAQFDKVTR+K++WKC LKDGIMH
Sbjct: 324 PTESEGSEPPLCEDDDEDDVDDADHGDDEPATNHLVLAQFDKVTRSKNKWKCTLKDGIMH 383
Query: 370 INNKDILFNKATGEFDF 386
+NN+DILF KATGEF+F
Sbjct: 384 LNNRDILFVKATGEFEF 400
>gi|168022370|ref|XP_001763713.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685206|gb|EDQ71603.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 150/447 (33%), Positives = 202/447 (45%), Gaps = 110/447 (24%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVIIDRTSA-- 38
MA S + VY+ V+EDVI+ + WE+K++Q+G I D T+
Sbjct: 13 MAMSVSN-VYLHVVEDVINNVRIDFQSEGVDDNVLNELQSLWELKLVQSGAIQDPTAHDP 71
Query: 39 ----PKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPG 94
+P P TPV DLN PY EEYETP + FP P T + P+
Sbjct: 72 LANPAAKPIPQTVATPVLDLNGPYVAAEEYETPPND--FPRVPASTSSREPVMFQY---- 125
Query: 95 STPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWM 154
+P PG ++ S P P + GNG PSSYM P S WM
Sbjct: 126 ---MP-----PGPSEESLQIDPGQQHLAP------------RIGNGTPSSYMQQPAS-WM 164
Query: 155 NPRPP-LSVDVNVAYVEGRDEAD------RGTSHQPLTQDFFTMSAGKRKREDFPAQYHN 207
N + + +++N Y E + D P+T+DF T+S GKRK ++ +
Sbjct: 165 NQKHRGVELNMNETYEEREGDTDTAQAPVAAPGAPPITKDFLTISTGKRKHDEISS---- 220
Query: 208 GGYNIPQQDGAGD-----AMSEIFELEVSEFPGRQDSVTTANRE---------------- 246
G Y IPQ+DGA D +M E E E E G + + R
Sbjct: 221 GQYYIPQRDGAVDDELSTSMGETCENEGREVLGNWQAERSVGRSEDLRLWLQYRRSADAA 280
Query: 247 ----IFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQA 302
I A L + QLDG I D YDD V EDYN +D+
Sbjct: 281 IEQLIHAKLLQGLSGVAQLDG-IDDEYDDA------------VAEDYN----EPEDDLPV 323
Query: 303 STPAVVTQNDAAEDDDDEP---LNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRW 359
+ + E + EP ++++DD D +E +T HLVLAQFDKVTR+K++W
Sbjct: 324 PEAKIAVNAEPTESEGSEPPLCEDDDEDDVDDADRGDDEPDTNHLVLAQFDKVTRSKNKW 383
Query: 360 KCALKDGIMHINNKDILFNKATGEFDF 386
KC LKDGIMH+NN+DILF KATGEF+F
Sbjct: 384 KCTLKDGIMHLNNRDILFVKATGEFEF 410
>gi|87241284|gb|ABD33142.1| Transcription factor IIA, beta-barrel [Medicago truncatula]
Length = 140
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 95/139 (68%), Positives = 107/139 (76%), Gaps = 2/139 (1%)
Query: 249 ANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVV 308
A+L + +IPQLDGPIP DDVLSTPNIYNY GV NEDYNI NTPAP ++ ASTPA+V
Sbjct: 3 ADLERLASRIPQLDGPIPYE-DDVLSTPNIYNYGGVFNEDYNIANTPAPPEVPASTPALV 61
Query: 309 TQNDAAEDDDDEPLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGI 367
QN+A +D+D+ DDD+ D E+ T HLVLAQFDKVTRTKSRWKC LKDGI
Sbjct: 62 AQNEAVNEDEDDEPLNEDDDDDLDDLDQEDDQDTNHLVLAQFDKVTRTKSRWKCTLKDGI 121
Query: 368 MHINNKDILFNKATGEFDF 386
MHIN KDILFNKATGEFDF
Sbjct: 122 MHINKKDILFNKATGEFDF 140
>gi|413948831|gb|AFW81480.1| hypothetical protein ZEAMMB73_123227 [Zea mays]
Length = 246
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 108/212 (50%), Positives = 120/212 (56%), Gaps = 52/212 (24%)
Query: 9 VYIRVIEDVISKI--------------------WEMKMIQAGVI---IDRTSAPKQPAPG 45
VYI VI+DVISK+ WEMKM+ G I IDRT A G
Sbjct: 53 VYISVIDDVISKVREDFITYGVGDAVLNELQALWEMKMLHCGAISGNIDRTKAAAASVGG 112
Query: 46 --GPITPVHDLNVPYEGT-EEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGST 102
G PVHDLNVPYE T EEY TPTA++LFPPTPLQTPIQTPLPG+
Sbjct: 113 TTGTTPPVHDLNVPYEATSEEYATPTADMLFPPTPLQTPIQTPLPGT------------- 159
Query: 103 PLPGTADNSTYNIPTGSSDY-PTPASDSGGNTEAKSGN---GRPSSYM--PPPPSPWMNP 156
D + YNIPTG SDY P+P SD + G PS YM PPPSPWMN
Sbjct: 160 ------DTAMYNIPTGPSDYAPSPISDVRNGMAINGADPTAGHPSPYMFLQPPPSPWMNQ 213
Query: 157 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDF 188
R PL VDVNVAYVEGR++ DRG QPLTQ+
Sbjct: 214 R-PLGVDVNVAYVEGREDPDRGVQPQPLTQNI 244
>gi|302824123|ref|XP_002993707.1| hypothetical protein SELMODRAFT_431754 [Selaginella moellendorffii]
gi|300138431|gb|EFJ05199.1| hypothetical protein SELMODRAFT_431754 [Selaginella moellendorffii]
Length = 217
Score = 111 bits (277), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/277 (33%), Positives = 126/277 (45%), Gaps = 89/277 (32%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI----IDRT 36
MATS VY+ V+EDVI+ + WE+KMIQ+G I I +
Sbjct: 1 MATSVAS-VYLHVMEDVINNVRADFQAENVEESVLNDLQSLWELKMIQSGTISPGEIPQN 59
Query: 37 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
+ A T V DLN+PY+ +EE+ TPTAE+LF P STP PG
Sbjct: 60 LGVRNAA--AQATSVQDLNIPYQASEEF-TPTAELLFSPY------------STPTPG-- 102
Query: 97 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 156
P TP+ +D GG ++ + G
Sbjct: 103 --PDQTPI----------------------ADKGGGDDSHNHRG---------------- 122
Query: 157 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 216
VDVNVAY EG+++ + G+ P+T+DFFT+++GKRKR+D PA Y G Y IPQ D
Sbjct: 123 -----VDVNVAYQEGQEDEENGSGQGPVTKDFFTLTSGKRKRDDLPANYFPGDY-IPQHD 176
Query: 217 GAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLAS 253
GA D E + + G D+ R +FA LA+
Sbjct: 177 GAADTPEETRRPSIPQHDGADDNYDDEVR-VFALLAN 212
>gi|302822167|ref|XP_002992743.1| hypothetical protein SELMODRAFT_430900 [Selaginella moellendorffii]
gi|300139484|gb|EFJ06224.1| hypothetical protein SELMODRAFT_430900 [Selaginella moellendorffii]
Length = 215
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 120/258 (46%), Gaps = 89/258 (34%)
Query: 1 MATSATGMVYIRVIEDVISKI--------------------WEMKMIQAGVI----IDRT 36
MATS VY+ V+EDVI+ + WE+KMIQ+G I I +
Sbjct: 1 MATSVAS-VYLHVMEDVINNVRADFQAENVEESVLNDLQSLWELKMIQSGTISPGEIPQN 59
Query: 37 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGST 96
+ A T V DLN+PY+G+EE+ TPTAE+LF P STP PG
Sbjct: 60 LGVRNAA--AQATSVQDLNIPYQGSEEF-TPTAELLFSPY------------STPTPG-- 102
Query: 97 PLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNP 156
P TP+ A SGG+ S N R
Sbjct: 103 --PDQTPI---------------------ADKSGGD---DSHNHR--------------- 121
Query: 157 RPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIPQQD 216
VDVNVAY EG+++ + G+ P+T+DFFT+++GKRKR+D PA Y G Y IPQ D
Sbjct: 122 ----GVDVNVAYQEGQEDEENGSGQGPVTKDFFTLTSGKRKRDDLPANYFPGDY-IPQHD 176
Query: 217 GAGDAMSEIFELEVSEFP 234
GA D EI L+ + P
Sbjct: 177 GAADT-PEILVLQETRRP 193
>gi|393246685|gb|EJD54193.1| hypothetical protein AURDEDRAFT_109941 [Auricularia delicata
TFB-10046 SS5]
Length = 278
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 302 ASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKC 361
A P VV +++ D + L+++D E D VD E + +V +DKV R K++WKC
Sbjct: 196 APRPIVVGRSEQTNDTINSDLDDSDSGEEDGVD--AEGTVKDIVFCTYDKVARVKNKWKC 253
Query: 362 ALKDGIMHINNKDILFNKATGEFDF 386
LKDG++H+N KD LF+K TGEF++
Sbjct: 254 VLKDGVIHVNGKDYLFSKCTGEFEW 278
>gi|390602132|gb|EIN11525.1| transcription factor IIA alpha/beta subunit [Punctularia
strigosozonata HHB-11173 SS5]
Length = 290
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 309 TQNDAAEDDDDEPLNEN-DDDELDDVDQGEE--LNTQHLVLAQFDKVTRTKSRWKCALKD 365
+Q+ + E++D E +N + DD + ++ D EE +V +DKV R K++WKC LKD
Sbjct: 210 SQSQSTEENDPEAINSDLDDSDTENEDDNEEGGQAVGDIVFCTYDKVARVKNKWKCVLKD 269
Query: 366 GIMHINNKDILFNKATGEFDF 386
G++H+NNKD LF K TGEF++
Sbjct: 270 GMIHVNNKDYLFAKCTGEFEW 290
>gi|351725343|ref|NP_001237089.1| SP-2 [Glycine max]
gi|75911509|gb|ABA29611.1| SP-2 [Glycine max]
Length = 45
Score = 77.8 bits (190), Expect = 7e-12, Method: Composition-based stats.
Identities = 36/43 (83%), Positives = 40/43 (93%), Gaps = 1/43 (2%)
Query: 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
Q LVLAQFDKVTRTKSRWKC+LKD ++ IN+KDILFNKATGEF
Sbjct: 3 QRLVLAQFDKVTRTKSRWKCSLKDRVL-INDKDILFNKATGEF 44
>gi|409045253|gb|EKM54734.1| hypothetical protein PHACADRAFT_258769 [Phanerochaete carnosa
HHB-10118-sp]
Length = 159
Score = 77.8 bits (190), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%), Gaps = 8/82 (9%)
Query: 310 QNDAAEDDDDEPLNENDDD-----ELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALK 364
Q+ A ++DDDE +N + DD E DD G E + +V +DKV R K++WKC LK
Sbjct: 81 QSRADQEDDDEAINSDLDDSDSEGERDDPTGGAETD---IVFCTYDKVARVKNKWKCILK 137
Query: 365 DGIMHINNKDILFNKATGEFDF 386
DG++H+N KD LF K TGEF++
Sbjct: 138 DGMIHVNGKDYLFAKCTGEFEW 159
>gi|440795446|gb|ELR16566.1| transcription factor iia, alpha/beta subunit protein [Acanthamoeba
castellanii str. Neff]
Length = 255
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 51/72 (70%), Gaps = 5/72 (6%)
Query: 315 EDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
E+D DE L + DDE +GEE +T ++ L QF+KVTR K++ KC LK G+MH+N +D
Sbjct: 189 ENDGDEDLGSDLDDE-----EGEEPDTDNIALCQFEKVTRIKNKRKCNLKAGVMHLNGRD 243
Query: 375 ILFNKATGEFDF 386
LFN+A GEF++
Sbjct: 244 YLFNRANGEFEW 255
>gi|193676570|ref|XP_001950593.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Acyrthosiphon
pisum]
Length = 407
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 53/77 (68%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
QN A+ D EPLN DD + D+D GE T+++++ Q+DK+TR++++WK KDGIM
Sbjct: 336 QNSAS---DAEPLNSGDD--VSDIDNGELFETENVIVCQYDKITRSRNKWKLYFKDGIMS 390
Query: 370 INNKDILFNKATGEFDF 386
+N D +F KATG+ ++
Sbjct: 391 LNGYDYVFQKATGDAEW 407
>gi|15237841|ref|NP_200731.1| transcription factor-related protein [Arabidopsis thaliana]
gi|9759244|dbj|BAB09768.1| unnamed protein product [Arabidopsis thaliana]
gi|39545874|gb|AAR28000.1| TFIIA-L3 [Arabidopsis thaliana]
gi|332009777|gb|AED97160.1| transcription factor-related protein [Arabidopsis thaliana]
Length = 186
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 17/77 (22%)
Query: 327 DDELDDVDQGEE-----------------LNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
D+ + DVD+ EE +N QHLV+ QFDKV R+K++W+C G+M
Sbjct: 110 DEAIVDVDENEEPLNEDDDDEEDDIDDDDMNIQHLVMCQFDKVKRSKNKWECKFNAGVMQ 169
Query: 370 INNKDILFNKATGEFDF 386
IN K++LF++ATG+F+F
Sbjct: 170 INGKNVLFSQATGDFNF 186
>gi|303274258|ref|XP_003056451.1| transcription factor IIA, alpha/beta subunit [Micromonas pusilla
CCMP1545]
gi|226462535|gb|EEH59827.1| transcription factor IIA, alpha/beta subunit [Micromonas pusilla
CCMP1545]
Length = 158
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 54/84 (64%), Gaps = 10/84 (11%)
Query: 301 QASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWK 360
Q S+ AV ++D E L+ + D+ L D L + +LVLAQ+DKVTR K++WK
Sbjct: 83 QISSAAV----KGLKEDSAESLSSDSDEGLVD------LCSSNLVLAQYDKVTRAKNKWK 132
Query: 361 CALKDGIMHINNKDILFNKATGEF 384
C LK G+M ++ KD+LF KA+GEF
Sbjct: 133 CTLKKGVMTLDGKDVLFGKASGEF 156
>gi|324513426|gb|ADY45517.1| TFIIA-alpha and beta-like factor [Ascaris suum]
Length = 412
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 47/80 (58%), Gaps = 5/80 (6%)
Query: 312 DAAEDDDDEPLNEND-----DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 366
D A DDDE + E D DD+ DD D ++V+ QF+KV R +S+WK LKDG
Sbjct: 333 DGATADDDEQVVEEDPLNSGDDQSDDEDVERLFEADNVVMCQFEKVHRARSKWKFTLKDG 392
Query: 367 IMHINNKDILFNKATGEFDF 386
IMHI KD F + +GE ++
Sbjct: 393 IMHIQGKDYCFQRCSGEAEW 412
>gi|440468274|gb|ELQ37443.1| hypothetical protein OOU_Y34scaffold00594g28 [Magnaporthe oryzae
Y34]
gi|440486307|gb|ELQ66188.1| hypothetical protein OOW_P131scaffold00420g27 [Magnaporthe oryzae
P131]
Length = 406
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 51/71 (71%), Gaps = 10/71 (14%)
Query: 316 DDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 375
DDD+EP +E+D+D G+EL Q L L +DKV R K++WKC LKDG++ +N K+
Sbjct: 346 DDDNEP-DESDED-------GDELQQQMLCL--YDKVQRVKNKWKCTLKDGVLCVNGKEY 395
Query: 376 LFNKATGEFDF 386
+F+KATGE+++
Sbjct: 396 VFHKATGEYEW 406
>gi|389632973|ref|XP_003714139.1| hypothetical protein MGG_01235 [Magnaporthe oryzae 70-15]
gi|351646472|gb|EHA54332.1| hypothetical protein MGG_01235 [Magnaporthe oryzae 70-15]
Length = 407
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 51/71 (71%), Gaps = 10/71 (14%)
Query: 316 DDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 375
DDD+EP +E+D+D G+EL Q L L +DKV R K++WKC LKDG++ +N K+
Sbjct: 347 DDDNEP-DESDED-------GDELQQQMLCL--YDKVQRVKNKWKCTLKDGVLCVNGKEY 396
Query: 376 LFNKATGEFDF 386
+F+KATGE+++
Sbjct: 397 VFHKATGEYEW 407
>gi|290979346|ref|XP_002672395.1| predicted protein [Naegleria gruberi]
gi|284085971|gb|EFC39651.1| predicted protein [Naegleria gruberi]
Length = 486
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 341 TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
T +++LAQ++KVTR K+RWKC LK GIMH++ KD LFNK TG+F++
Sbjct: 441 TPNIILAQYEKVTRHKNRWKCTLKCGIMHLDGKDYLFNKLTGDFEW 486
>gi|391342868|ref|XP_003745737.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Metaseiulus occidentalis]
Length = 357
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 53/69 (76%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
D+EPLN NDD +++ + +E++ ++V+ Q+DK++R+++RWK LKDGIM+I +D +F
Sbjct: 291 DEEPLNSNDDVSDEELSEAQEID--NVVVCQYDKISRSRNRWKFHLKDGIMNIQGRDYVF 348
Query: 378 NKATGEFDF 386
K+TG+ ++
Sbjct: 349 QKSTGDAEW 357
>gi|426197147|gb|EKV47074.1| hypothetical protein AGABI2DRAFT_192339 [Agaricus bisporus var.
bisporus H97]
Length = 325
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 64/130 (49%), Gaps = 11/130 (8%)
Query: 257 KIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAED 316
+IPQ+DGP D+ P Y + + + P P +Q S AV +A
Sbjct: 207 RIPQVDGPSESSGDEGSPEPTGYAPR------TSHPSLPQPGSVQPSQAAVAKDEEAINS 260
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
D D+ D E + + +V +DKV R K++WKC LKDG++H+N KD L
Sbjct: 261 DLDD-----SDTENEAEAEEGGTGDTDIVFCTYDKVARVKNKWKCILKDGMIHVNGKDYL 315
Query: 377 FNKATGEFDF 386
F K TGEF++
Sbjct: 316 FAKCTGEFEW 325
>gi|402224091|gb|EJU04154.1| hypothetical protein DACRYDRAFT_20780 [Dacryopinax sp. DJM-731 SS1]
Length = 234
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/42 (69%), Positives = 34/42 (80%)
Query: 345 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
VL +DKV R K++WKC LKDGIMHIN KD LF+K TGEFD+
Sbjct: 193 VLCTYDKVQRVKNKWKCVLKDGIMHINGKDYLFSKCTGEFDW 234
>gi|255070895|ref|XP_002507529.1| transcription factor IIA, alpha/beta subunit [Micromonas sp.
RCC299]
gi|226522804|gb|ACO68787.1| transcription factor IIA, alpha/beta subunit [Micromonas sp.
RCC299]
Length = 157
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 319 DEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFN 378
DE L+ + DD + D ++ +L+LAQF+KV R KS+WKC LK+G+M + N+DILF
Sbjct: 90 DEILSSDTDDAEEGSDYDDDSKCLNLILAQFEKVARAKSKWKCVLKEGVMTLENRDILFG 149
Query: 379 KATGEFDF 386
+ GEF +
Sbjct: 150 RGNGEFRW 157
>gi|384490672|gb|EIE81894.1| hypothetical protein RO3G_06599 [Rhizopus delemar RA 99-880]
Length = 363
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 39/45 (86%)
Query: 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+H++L +DKVTRTK++WKC LKDGIM +N +D LF++ATG+F++
Sbjct: 319 EHIILCLYDKVTRTKNKWKCVLKDGIMLVNGRDYLFHRATGDFEW 363
>gi|384252956|gb|EIE26431.1| hypothetical protein COCSUDRAFT_64488 [Coccomyxa subellipsoidea
C-169]
Length = 258
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Query: 302 ASTPAVVTQNDAAED-DDDEPLNENDDDELDDVDQGEELNTQ--HLVLAQFDKVTRTKSR 358
A + Q D ++D + + + +D L DV +E + + ++V+AQF+KV+RTK+R
Sbjct: 171 AHQNGTIPQQDGSDDPQEHDKGKQEKEDNLSDVSSDDEKDEECDNVVIAQFEKVSRTKNR 230
Query: 359 WKCALKDGIMHINNKDILFNKATGEFDF 386
WKC LKDGI+ I+ +D LF++A+GE F
Sbjct: 231 WKCQLKDGIITIDGRDYLFHRASGEMQF 258
>gi|312090801|ref|XP_003146750.1| transcription factor IIA [Loa loa]
gi|307758086|gb|EFO17320.1| transcription factor IIA [Loa loa]
Length = 409
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 5/81 (6%)
Query: 310 QNDAAEDDD----DEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKD 365
+ +A ED+D ++PLN DD + DD D ++LV+ QF+KV R +S+WK LKD
Sbjct: 330 EGNAVEDEDQVTEEDPLNSGDD-QSDDEDVERLFEAENLVMCQFEKVHRARSKWKFTLKD 388
Query: 366 GIMHINNKDILFNKATGEFDF 386
GIMHI KD F + +GE ++
Sbjct: 389 GIMHIRGKDHCFQRCSGEAEW 409
>gi|392569631|gb|EIW62804.1| transcription factor IIA alpha/beta subunit [Trametes versicolor
FP-101664 SS1]
Length = 291
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 54/82 (65%), Gaps = 4/82 (4%)
Query: 309 TQNDAAED-DDDEPLNENDDDELDDVDQ-GEELNT--QHLVLAQFDKVTRTKSRWKCALK 364
+Q AAE +D E +N + DD DV+Q G E + Q +V +DKV R K++WKC LK
Sbjct: 210 SQTSAAEKAEDSEAINSDLDDSDSDVEQDGIEGGSADQDIVFCTYDKVARVKNKWKCVLK 269
Query: 365 DGIMHINNKDILFNKATGEFDF 386
DG++HIN KD LF K +GEF++
Sbjct: 270 DGMIHINGKDYLFAKCSGEFEW 291
>gi|340924286|gb|EGS19189.1| transcription factor TFIIA-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 392
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 9/71 (12%)
Query: 316 DDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 375
DD +E L E+ DD DD T H++L +DKV R K++WKC LKDG++ +N K+
Sbjct: 331 DDPNEGLGEDSDD--DDC-------TGHMMLCMYDKVQRVKNKWKCILKDGVLTVNGKEY 381
Query: 376 LFNKATGEFDF 386
+F+KATGE+++
Sbjct: 382 VFHKATGEYEW 392
>gi|336371893|gb|EGO00233.1| hypothetical protein SERLA73DRAFT_122281 [Serpula lacrymans var.
lacrymans S7.3]
Length = 300
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 53/94 (56%), Gaps = 3/94 (3%)
Query: 296 APNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEE---LNTQHLVLAQFDKV 352
AP S P + + + DD E +N + DD + ++ + + +V +DKV
Sbjct: 207 APRASHPSLPQPPQSSKSTQPDDSEAINSDLDDSDTEGEEEADEAGVGESDIVFCTYDKV 266
Query: 353 TRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
R K++WKC LKDG++HIN KD LF K TGEF++
Sbjct: 267 ARVKNKWKCILKDGMIHINGKDYLFAKCTGEFEW 300
>gi|321468455|gb|EFX79440.1| hypothetical protein DAPPUDRAFT_304824 [Daphnia pulex]
Length = 335
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 2/72 (2%)
Query: 315 EDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
E+ D+EPLN DD + D D T ++V+ Q+DK+TR+++RWK LKDGIM+IN +D
Sbjct: 266 ENADEEPLNSEDD--VTDDDPSVLFETDNVVVCQYDKITRSRNRWKFHLKDGIMNINGRD 323
Query: 375 ILFNKATGEFDF 386
+F KA G+ ++
Sbjct: 324 YVFQKANGDAEW 335
>gi|432945413|ref|XP_004083586.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Oryzias latipes]
Length = 251
Score = 70.9 bits (172), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 66/104 (63%), Gaps = 7/104 (6%)
Query: 283 GVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQ 342
GV+ + IV P N +Q +T + AA ++EPLN DD + D + E +T+
Sbjct: 155 GVIIQPQQIVLAPG-NKVQGTTQVM----QAAAMVEEEPLNSGDD--VSDDENQELFDTE 207
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++V+ Q+DK+ R+K++WK LKDGIM++N +D +F+K+ G+ ++
Sbjct: 208 NVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVFSKSIGDAEW 251
>gi|170571342|ref|XP_001891692.1| Transcription factor IIA, alpha/beta subunit family protein [Brugia
malayi]
gi|158603666|gb|EDP39506.1| Transcription factor IIA, alpha/beta subunit family protein [Brugia
malayi]
Length = 388
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 50/84 (59%), Gaps = 6/84 (7%)
Query: 308 VTQNDAAEDDDDE-----PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCA 362
+++ A DD+D+ PLN DD DD D ++LV+ QF+KV R +S+WK
Sbjct: 306 ISEEGNAVDDEDQVTEEDPLNSGDDQS-DDEDVERLFEAENLVMCQFEKVHRARSKWKFT 364
Query: 363 LKDGIMHINNKDILFNKATGEFDF 386
LKDGIMHI KD F + +GE ++
Sbjct: 365 LKDGIMHIRGKDHCFQRCSGEAEW 388
>gi|328773215|gb|EGF83252.1| hypothetical protein BATDEDRAFT_84804 [Batrachochytrium
dendrobatidis JAM81]
Length = 275
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
HLVL QF+KV R K++WKC LKDG++++N KD LFNKA +F++
Sbjct: 232 HLVLCQFEKVQRVKNKWKCVLKDGVVNVNGKDYLFNKANCDFEW 275
>gi|169616702|ref|XP_001801766.1| hypothetical protein SNOG_11526 [Phaeosphaeria nodorum SN15]
gi|160703243|gb|EAT81234.2| hypothetical protein SNOG_11526 [Phaeosphaeria nodorum SN15]
Length = 461
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 53/78 (67%), Gaps = 2/78 (2%)
Query: 311 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWKCALKDGIM 368
+D E+D D+ +N + DD D+++ G+ + + + +L +DKV R K++WKC LKDGI+
Sbjct: 384 DDVKEEDPDDAINSDLDDPEDELNDGDNSDDEMVDYMLCTYDKVQRVKNKWKCTLKDGIL 443
Query: 369 HINNKDILFNKATGEFDF 386
N K+ LF+KA GEF++
Sbjct: 444 TTNKKEYLFHKANGEFEW 461
>gi|256016553|emb|CAR63572.1| putative Prion-like-(q/n-rich)-domain-bearing protein protein 51
[Angiostrongylus cantonensis]
Length = 376
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + DD D + ++++ QF+KV R +S+WK LKDGIMHI+NKD F
Sbjct: 309 EEDPLNSGDD-QSDDEDLETLFDADNVIMCQFEKVHRARSKWKFQLKDGIMHIDNKDYCF 367
Query: 378 NKATGEFDF 386
K +GE ++
Sbjct: 368 QKCSGEAEW 376
>gi|111598505|gb|AAH79909.1| Gtf2a1 protein [Mus musculus]
Length = 378
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 57/77 (74%), Gaps = 6/77 (7%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEEL-NTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
AED ++EPLN DD V++G+EL +T+++V+ Q+DK+ R+K++WK LKDGIM+
Sbjct: 305 GAEDGQVEEEPLNSEDDV---SVEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMN 361
Query: 370 INNKDILFNKATGEFDF 386
+N +D +F+KA G+ ++
Sbjct: 362 LNGRDYIFSKAIGDAEW 378
>gi|348573205|ref|XP_003472382.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Cavia porcellus]
Length = 561
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 314 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 371
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 489 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 546
Query: 372 NKDILFNKATGEFDF 386
+D +F+KA G+ ++
Sbjct: 547 GRDYIFSKAIGDAEW 561
>gi|405970121|gb|EKC35053.1| Transcription initiation factor IIA subunit 1 [Crassostrea gigas]
Length = 251
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 56/86 (65%), Gaps = 5/86 (5%)
Query: 301 QASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWK 360
QAS P ++ Q + EPLN DD++ D D + +T ++V+ Q+DK+ R K++WK
Sbjct: 171 QASIPTMIQQPQGQQQ---EPLNS--DDDVSDEDPSDLFDTDNVVVCQYDKINRNKNKWK 225
Query: 361 CALKDGIMHINNKDILFNKATGEFDF 386
LKDGIM++N KD +F KATG+ ++
Sbjct: 226 FHLKDGIMNLNGKDFVFQKATGDAEW 251
>gi|443709728|gb|ELU04277.1| hypothetical protein CAPTEDRAFT_105674 [Capitella teleta]
Length = 72
Score = 68.9 bits (167), Expect = 4e-09, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 46/60 (76%)
Query: 327 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
DD++ + D G +T+++V+ QFDK+ R+K+RWK LKDGIM++N +D +F KATG+ ++
Sbjct: 13 DDDVSEEDAGAASDTENVVVCQFDKIHRSKNRWKFHLKDGIMNLNGRDYVFQKATGDAEW 72
>gi|444708846|gb|ELW49885.1| Transcription initiation factor IIA subunit 1 [Tupaia chinensis]
Length = 407
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 334 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 391
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 392 NGRDYIFSKAIGDAEW 407
>gi|332223451|ref|XP_003260884.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Nomascus leucogenys]
Length = 337
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 264 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 321
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 322 NGRDYIFSKAIGDAEW 337
>gi|42476101|ref|NP_963889.1| transcription initiation factor IIA subunit 1 isoform 2 [Homo
sapiens]
gi|397475004|ref|XP_003808945.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Pan paniscus]
gi|402876876|ref|XP_003902178.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Papio anubis]
gi|426377669|ref|XP_004055583.1| PREDICTED: transcription initiation factor IIA subunit 1 [Gorilla
gorilla gorilla]
gi|433501|emb|CAA53152.1| TFIIA [Homo sapiens]
gi|727195|dbj|BAA03603.1| TFIIA-37 [Homo sapiens]
gi|119601741|gb|EAW81335.1| general transcription factor IIA, 1, 19/37kDa, isoform CRA_b [Homo
sapiens]
Length = 337
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 264 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 321
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 322 NGRDYIFSKAIGDAEW 337
>gi|412990391|emb|CCO19709.1| transcription factor IIa large subunit 3 [Bathycoccus prasinos]
Length = 71
Score = 68.6 bits (166), Expect = 5e-09, Method: Composition-based stats.
Identities = 28/45 (62%), Positives = 38/45 (84%)
Query: 340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
+ +L+LAQF+KVTR+KS+WKC LK+G+M+IN D F+KATGEF
Sbjct: 25 DISNLILAQFEKVTRSKSKWKCVLKEGMMNINGNDYTFSKATGEF 69
>gi|194038207|ref|XP_001924425.1| PREDICTED: transcription initiation factor IIA subunit 1 [Sus
scrofa]
Length = 341
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 268 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 325
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 326 NGRDYIFSKAIGDAEW 341
>gi|358391042|gb|EHK40447.1| hypothetical protein TRIATDRAFT_296407 [Trichoderma atroviride IMI
206040]
Length = 372
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +FNKATGE+++
Sbjct: 329 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFNKATGEYEW 372
>gi|195449174|ref|XP_002071958.1| GK22574 [Drosophila willistoni]
gi|194168043|gb|EDW82944.1| GK22574 [Drosophila willistoni]
Length = 379
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D D E T+++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 313 EEEPLNSEDD--VTDEDSAEMFETENVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 370
Query: 378 NKATGEFDF 386
K+ G+ ++
Sbjct: 371 QKSNGDAEW 379
>gi|114654239|ref|XP_522920.2| PREDICTED: transcription initiation factor IIA subunit 1 isoform 3
[Pan troglodytes]
Length = 337
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 264 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 321
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 322 NGRDYIFSKAIGDAEW 337
>gi|403264809|ref|XP_003924664.1| PREDICTED: transcription initiation factor IIA subunit 1 [Saimiri
boliviensis boliviensis]
Length = 337
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 264 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 321
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 322 NGRDYIFSKAIGDAEW 337
>gi|329112489|ref|NP_001178146.2| transcription initiation factor IIA subunit 1 [Bos taurus]
Length = 337
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 264 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 321
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 322 NGRDYIFSKAIGDAEW 337
>gi|296215644|ref|XP_002754213.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Callithrix jacchus]
Length = 337
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 264 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 321
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 322 NGRDYIFSKAIGDAEW 337
>gi|47938836|gb|AAH71528.1| General transcription factor IIA, 1 [Danio rerio]
Length = 369
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 303 EEEPLNSGDD--VSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 360
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 361 SKAIGDAEW 369
>gi|358387730|gb|EHK25324.1| hypothetical protein TRIVIDRAFT_81972 [Trichoderma virens Gv29-8]
Length = 343
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +FNKATGE+++
Sbjct: 300 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFNKATGEYEW 343
>gi|354477640|ref|XP_003501027.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Cricetulus griseus]
Length = 339
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 266 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 323
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 324 NGRDYIFSKAIGDAEW 339
>gi|48735070|gb|AAH72315.1| TFIIAa/b-2 protein, partial [Xenopus laevis]
Length = 366
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 300 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 357
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 358 SKAIGDAEW 366
>gi|148229644|ref|NP_001083954.1| general transcription factor IIA, 1, 19/37kDa [Xenopus laevis]
gi|34099896|gb|AAP44969.1| transcription factor IIA large subunit-2 [Xenopus laevis]
gi|72679630|gb|AAI00226.1| TFIIAa/b-2 protein [Xenopus laevis]
Length = 367
Score = 68.6 bits (166), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 55/70 (78%), Gaps = 4/70 (5%)
Query: 318 DDEPLNENDDDELDDVDQGEEL-NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
++EPLN DD + D ++G+EL +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +
Sbjct: 301 EEEPLNSEDD--VSD-EEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFV 357
Query: 377 FNKATGEFDF 386
F+KA G+ ++
Sbjct: 358 FSKAIGDAEW 367
>gi|57870633|gb|AAH89088.1| Unknown (protein for MGC:85109) [Xenopus laevis]
Length = 369
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 303 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 360
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 361 SKAIGDAEW 369
>gi|392591717|gb|EIW81044.1| transcription factor IIA alpha beta subunit [Coniophora puteana
RWD-64-598 SS2]
Length = 300
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+V +DKV R K++WKC LKDG++H+N KD LF K TGEF++
Sbjct: 258 IVFCTYDKVARVKNKWKCTLKDGMIHVNGKDYLFAKCTGEFEW 300
>gi|296417204|ref|XP_002838249.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634175|emb|CAZ82440.1| unnamed protein product [Tuber melanosporum]
Length = 373
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 31/208 (14%)
Query: 202 PAQYHNGGYN-IPQQDGAGD-----------AMSEIFELEVSEFPGRQDSVTTANREI-- 247
P Q NG + IPQ DG G+ + SE ++ + + A E+
Sbjct: 174 PQQRPNGQQSGIPQHDGGGEETIPIEGYGSISRSEADKILLRRISDAERESARATDELVK 233
Query: 248 -FANLASSSVKIPQLDGP--IPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQAST 304
NL SS K + G DPY++ L N Y + V ++ NTP+P
Sbjct: 234 ALMNLGHSS-KSSKAKGRRRAQDPYEEALDPFNHYPHAAPVPTVLDVSNTPSPR------ 286
Query: 305 PAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQ------HLVLAQFDKVTRTKSR 358
PA + Q D E D+E ++E+ + D + +E++ + ++L +DKV RTK++
Sbjct: 287 PAPMGQVDG-ESGDEEVVDEDAINSDLDDPEDDEIDGEDDDEVPQIMLCMYDKVQRTKNK 345
Query: 359 WKCALKDGIMHINNKDILFNKATGEFDF 386
WKC LKDG++ IN + +F+KA GE+++
Sbjct: 346 WKCVLKDGVLTINQTEYVFHKANGEYEW 373
>gi|47086725|ref|NP_997822.1| transcription initiation factor IIA subunit 1 [Danio rerio]
gi|29124431|gb|AAH48894.1| General transcription factor IIA, 1 [Danio rerio]
gi|182891266|gb|AAI64197.1| Gtf2a1 protein [Danio rerio]
Length = 369
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 303 EEEPLNSGDD--VSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 360
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 361 SKAIGDAEW 369
>gi|213626277|gb|AAI70366.1| Unknown (protein for MGC:197093) [Xenopus laevis]
Length = 367
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 301 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 358
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 359 SKAIGDAEW 367
>gi|62858149|ref|NP_001016908.1| general transcription factor IIA, 1, 19/37kDa [Xenopus (Silurana)
tropicalis]
gi|89271946|emb|CAJ83726.1| general transcription factor IIA, 1 [Xenopus (Silurana) tropicalis]
Length = 367
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 301 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 358
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 359 SKAIGDAEW 367
>gi|148236361|ref|NP_001082753.1| general transcription factor IIA, 1, 19/37kDa [Xenopus laevis]
gi|34099900|gb|AAP44971.1| transcription factor IIA large subunit-1 [Xenopus laevis]
Length = 370
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 304 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 361
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 362 SKAIGDAEW 370
>gi|33312518|gb|AAQ04072.1|AF424777_1 transcription factor IIA large subunit [Xenopus laevis]
Length = 370
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 304 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDFVF 361
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 362 SKAIGDAEW 370
>gi|340516937|gb|EGR47183.1| transcription factor IIA alpha/beta subunit [Trichoderma reesei
QM6a]
Length = 354
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +FNKATGE+++
Sbjct: 311 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFNKATGEYEW 354
>gi|338719816|ref|XP_001492421.2| PREDICTED: transcription initiation factor IIA subunit 1 [Equus
caballus]
Length = 377
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 304 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 361
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 362 NGRDYIFSKAIGDAEW 377
>gi|47222678|emb|CAG00112.1| unnamed protein product [Tetraodon nigroviridis]
Length = 410
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N KD +F
Sbjct: 344 EEEPLNSGDD--VSDEEDQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGKDYVF 401
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 402 SKAIGDAEW 410
>gi|431839183|gb|ELK01110.1| Transcription initiation factor IIA subunit 1 [Pteropus alecto]
Length = 373
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 300 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 357
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 358 NGRDYIFSKAIGDAEW 373
>gi|402585624|gb|EJW79563.1| hypothetical protein WUBG_09527, partial [Wuchereria bancrofti]
Length = 70
Score = 68.2 bits (165), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DD D ++LV+ QF+KV R +S+WK LKDGIMHI KD F
Sbjct: 3 EEDPLNSGDDQS-DDEDVERLFEAENLVMCQFEKVHRARSKWKFTLKDGIMHIRGKDHCF 61
Query: 378 NKATGEFDF 386
+ +GE ++
Sbjct: 62 QRCSGEAEW 70
>gi|449663500|ref|XP_002168678.2| PREDICTED: uncharacterized protein LOC100203095 [Hydra
magnipapillata]
Length = 317
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 48/66 (72%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D + +T+++V+ Q+DK+ RT++RWK LKDGIM++ NKD +F+KA
Sbjct: 254 PLNSEDD--VSDEDPTDLFDTENVVVCQYDKIARTRNRWKFHLKDGIMNLRNKDFVFHKA 311
Query: 381 TGEFDF 386
G+ ++
Sbjct: 312 NGDSEW 317
>gi|345804050|ref|XP_854907.2| PREDICTED: transcription initiation factor IIA subunit 1 [Canis
lupus familiaris]
Length = 646
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 573 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 630
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 631 NGRDYIFSKAIGDAEW 646
>gi|297796855|ref|XP_002866312.1| hypothetical protein ARALYDRAFT_496033 [Arabidopsis lyrata subsp.
lyrata]
gi|297312147|gb|EFH42571.1| hypothetical protein ARALYDRAFT_496033 [Arabidopsis lyrata subsp.
lyrata]
Length = 184
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 36/47 (76%)
Query: 340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
N HLV+ QFDKV R K++W+C G+M IN K++LF++ATG+F+F
Sbjct: 138 NIPHLVMCQFDKVKRCKNKWECKFNAGVMQINGKNVLFSQATGDFNF 184
>gi|344273615|ref|XP_003408616.1| PREDICTED: transcription initiation factor IIA subunit 1 [Loxodonta
africana]
Length = 370
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 297 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 354
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 355 NGRDYIFSKAIGDAEW 370
>gi|332223449|ref|XP_003260883.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 1
[Nomascus leucogenys]
Length = 376
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376
>gi|238599344|ref|XP_002394855.1| hypothetical protein MPER_05192 [Moniliophthora perniciosa FA553]
gi|215464561|gb|EEB95785.1| hypothetical protein MPER_05192 [Moniliophthora perniciosa FA553]
Length = 156
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+V +DKV R K++WKC LKDG++H+N KD LF+K TGEF++
Sbjct: 114 IVFCTYDKVARVKNKWKCILKDGMIHVNGKDYLFSKCTGEFEW 156
>gi|7706735|ref|NP_056943.1| transcription initiation factor IIA subunit 1 isoform 1 [Homo
sapiens]
gi|383872924|ref|NP_001244639.1| transcription initiation factor IIA subunit 1 [Macaca mulatta]
gi|397475002|ref|XP_003808944.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 1
[Pan paniscus]
gi|402876874|ref|XP_003902177.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 1
[Papio anubis]
gi|1711663|sp|P52655.1|TF2AA_HUMAN RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; AltName: Full=TFIIAL; AltName: Full=Transcription
initiation factor TFIIA 42 kDa subunit; Short=TFIIA-42;
Contains: RecName: Full=Transcription initiation factor
IIA alpha chain; AltName: Full=TFIIA p35 subunit;
Contains: RecName: Full=Transcription initiation factor
IIA beta chain; AltName: Full=TFIIA p19 subunit
gi|6721137|gb|AAF26776.1|AC010582_2 TFIIA-42 [Homo sapiens]
gi|433500|emb|CAA53151.1| TFIIA [Homo sapiens]
gi|452272|emb|CAA54442.1| TFIIA/alpha, p55 [Homo sapiens]
gi|727197|dbj|BAA03604.1| 'TFIIA-42' [Homo sapiens]
gi|76825402|gb|AAI07157.1| General transcription factor IIA, 1, 19/37kDa [Homo sapiens]
gi|76828070|gb|AAI07156.1| General transcription factor IIA, 1, 19/37kDa [Homo sapiens]
gi|119601740|gb|EAW81334.1| general transcription factor IIA, 1, 19/37kDa, isoform CRA_a [Homo
sapiens]
gi|167773425|gb|ABZ92147.1| general transcription factor IIA, 1, 19/37kDa [synthetic construct]
gi|167773975|gb|ABZ92422.1| general transcription factor IIA, 1, 19/37kDa [synthetic construct]
gi|261858774|dbj|BAI45909.1| general transcription factor IIA, 1, 19/37kDa [synthetic construct]
gi|380784291|gb|AFE64021.1| transcription initiation factor IIA subunit 1 isoform 1 [Macaca
mulatta]
gi|383408289|gb|AFH27358.1| transcription initiation factor IIA subunit 1 isoform 1 [Macaca
mulatta]
gi|384943596|gb|AFI35403.1| transcription initiation factor IIA subunit 1 isoform 1 [Macaca
mulatta]
Length = 376
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376
>gi|197098738|ref|NP_001125209.1| transcription initiation factor IIA subunit 1 [Pongo abelii]
gi|67462024|sp|Q5RCU0.1|TF2AA_PONAB RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; Contains: RecName: Full=Transcription initiation
factor IIA alpha chain; AltName: Full=TFIIA p35 subunit;
Contains: RecName: Full=Transcription initiation factor
IIA beta chain; AltName: Full=TFIIA p19 subunit
gi|55727322|emb|CAH90417.1| hypothetical protein [Pongo abelii]
Length = 376
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376
>gi|347841660|emb|CCD56232.1| hypothetical protein [Botryotinia fuckeliana]
Length = 456
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 37/44 (84%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC +KDG++ +NNK+ +F+KATGE+++
Sbjct: 413 HIMLCMYDKVQRVKNKWKCVMKDGVLTVNNKEYVFHKATGEYEW 456
>gi|154303305|ref|XP_001552060.1| hypothetical protein BC1G_09401 [Botryotinia fuckeliana B05.10]
Length = 455
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 37/44 (84%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC +KDG++ +NNK+ +F+KATGE+++
Sbjct: 412 HIMLCMYDKVQRVKNKWKCVMKDGVLTVNNKEYVFHKATGEYEW 455
>gi|30141908|ref|NP_780544.1| transcription initiation factor IIA subunit 1 isoform 2 [Mus
musculus]
gi|26339518|dbj|BAC33430.1| unnamed protein product [Mus musculus]
gi|109734484|gb|AAI17830.1| General transcription factor II A, 1 [Mus musculus]
gi|109734880|gb|AAI17831.1| General transcription factor II A, 1 [Mus musculus]
Length = 339
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 266 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 323
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 324 NGRDYIFSKAIGDAEW 339
>gi|326920889|ref|XP_003206699.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Meleagris gallopavo]
Length = 439
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 373 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 430
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 431 SKAIGDAEW 439
>gi|395827875|ref|XP_003787117.1| PREDICTED: transcription initiation factor IIA subunit 1 [Otolemur
garnettii]
Length = 465
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 54/75 (72%), Gaps = 4/75 (5%)
Query: 314 AEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 371
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N
Sbjct: 393 AEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLN 450
Query: 372 NKDILFNKATGEFDF 386
+D +F+KA G+ ++
Sbjct: 451 GRDYIFSKAIGDAEW 465
>gi|409080246|gb|EKM80606.1| hypothetical protein AGABI1DRAFT_83593, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 325
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 257 KIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAED 316
++PQ+DGP D+ P Y + + + P P +Q S AV +A
Sbjct: 207 RMPQVDGPSESSGDEGSPEPTGYAPRT------SHPSLPQPGSVQPSQAAVAKDEEAINS 260
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
D D+ D E + + +V +DKV R K++WKC LKDG++H+N KD L
Sbjct: 261 DLDD-----SDTENEAEAEEGGTGDTDIVFCTYDKVARVKNKWKCILKDGMIHVNGKDYL 315
Query: 377 FNKATGEFDF 386
F K TG F
Sbjct: 316 FAKCTGSVAF 325
>gi|355693485|gb|EHH28088.1| hypothetical protein EGK_18434, partial [Macaca mulatta]
gi|355778774|gb|EHH63810.1| hypothetical protein EGM_16856, partial [Macaca fascicularis]
Length = 365
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 292 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 349
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 350 NGRDYIFSKAIGDAEW 365
>gi|357613600|gb|EHJ68608.1| tfiia large subunit [Danaus plexippus]
Length = 274
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + G+ +T ++V+ Q+DK+TR++++WK LKDGIM+++ KD +F
Sbjct: 208 EEEPLNSGDD--VSDEEPGDMFDTDNVVVCQYDKITRSRNKWKFHLKDGIMNLSGKDYVF 265
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 266 QKANGDAEW 274
>gi|114654237|ref|XP_001134883.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Pan troglodytes]
gi|410210940|gb|JAA02689.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
gi|410256268|gb|JAA16101.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
gi|410301958|gb|JAA29579.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
gi|410331531|gb|JAA34712.1| general transcription factor IIA, 1, 19/37kDa [Pan troglodytes]
Length = 376
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376
>gi|395503790|ref|XP_003756245.1| PREDICTED: transcription initiation factor IIA subunit 1
[Sarcophilus harrisii]
Length = 382
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 316 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 373
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 374 SKAIGDAEW 382
>gi|451846311|gb|EMD59621.1| hypothetical protein COCSADRAFT_40793 [Cochliobolus sativus ND90Pr]
Length = 372
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 315 EDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWKCALKDGIMHINN 372
E+D D+ +N + DD D+++ G+ + + +L +DKV R K++WKC LKDGI+ N
Sbjct: 299 EEDPDDAINSDLDDSEDELNDGDNSDDDMVDYMLCTYDKVQRVKNKWKCTLKDGILTTNK 358
Query: 373 KDILFNKATGEFDF 386
K+ LF+KA GEF++
Sbjct: 359 KEYLFHKANGEFEW 372
>gi|301765872|ref|XP_002918356.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Ailuropoda melanoleuca]
Length = 376
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376
>gi|426233748|ref|XP_004010876.1| PREDICTED: transcription initiation factor IIA subunit 1 [Ovis
aries]
gi|296482864|tpg|DAA24979.1| TPA: TFIIA alpha, p55-like [Bos taurus]
Length = 376
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376
>gi|440907254|gb|ELR57419.1| Transcription initiation factor IIA subunit 1, partial [Bos
grunniens mutus]
Length = 366
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 293 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 350
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 351 NGRDYIFSKAIGDAEW 366
>gi|417399907|gb|JAA46934.1| Putative transcription initiation factor iia subunit 1 isoform 3
[Desmodus rotundus]
Length = 376
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376
>gi|281351391|gb|EFB26975.1| hypothetical protein PANDA_006799 [Ailuropoda melanoleuca]
Length = 366
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 293 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 350
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 351 NGRDYIFSKAIGDAEW 366
>gi|451994420|gb|EMD86890.1| hypothetical protein COCHEDRAFT_1217905 [Cochliobolus
heterostrophus C5]
Length = 376
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 315 EDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWKCALKDGIMHINN 372
E+D D+ +N + DD D+++ G+ + + +L +DKV R K++WKC LKDGI+ N
Sbjct: 303 EEDPDDAINSDLDDSEDELNDGDNSDDDMVDYMLCTYDKVQRVKNKWKCTLKDGILTTNK 362
Query: 373 KDILFNKATGEFDF 386
K+ LF+KA GEF++
Sbjct: 363 KEYLFHKANGEFEW 376
>gi|60099025|emb|CAH65343.1| hypothetical protein RCJMB04_19p6 [Gallus gallus]
Length = 338
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 272 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 329
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 330 SKAIGDAEW 338
>gi|11559984|ref|NP_071544.1| transcription initiation factor IIA subunit 1 [Rattus norvegicus]
gi|67461589|sp|O08949.1|TF2AA_RAT RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; Contains: RecName: Full=Transcription initiation
factor IIA alpha chain; AltName: Full=TFIIA p35 subunit;
Contains: RecName: Full=Transcription initiation factor
IIA beta chain; AltName: Full=TFIIA p19 subunit
gi|2149996|gb|AAB58716.1| TFIIA large subunit [Rattus norvegicus]
gi|149025305|gb|EDL81672.1| general transcription factor 2a, 1 [Rattus norvegicus]
Length = 377
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 304 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 361
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 362 NGRDYIFSKAIGDAEW 377
>gi|194907494|ref|XP_001981564.1| GG11539 [Drosophila erecta]
gi|190656202|gb|EDV53434.1| GG11539 [Drosophila erecta]
Length = 366
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 300 EEEPLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 357
Query: 378 NKATGEFDF 386
K+ G+ ++
Sbjct: 358 QKSNGDAEW 366
>gi|449504455|ref|XP_002200584.2| PREDICTED: stonin-2 [Taeniopygia guttata]
Length = 1415
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 1349 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 1406
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 1407 SKAIGDAEW 1415
>gi|299752116|ref|XP_001830709.2| hypothetical protein CC1G_03246 [Coprinopsis cinerea okayama7#130]
gi|298409685|gb|EAU91078.2| hypothetical protein CC1G_03246 [Coprinopsis cinerea okayama7#130]
Length = 305
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+V +DKV R K++WKC LK+G++H+N KD LF+K TGEF++
Sbjct: 263 IVFCTYDKVARVKTKWKCVLKEGMIHVNGKDYLFSKCTGEFEW 305
>gi|149586008|ref|XP_001512353.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Ornithorhynchus anatinus]
Length = 377
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 311 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 368
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 369 SKAIGDAEW 377
>gi|291406681|ref|XP_002719614.1| PREDICTED: TFIIA alpha, p55 [Oryctolagus cuniculus]
Length = 387
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 314 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 371
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 372 NGRDYIFSKAIGDAEW 387
>gi|351694362|gb|EHA97280.1| Transcription initiation factor IIA subunit 1 [Heterocephalus
glaber]
Length = 393
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 320 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 377
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 378 NGRDYIFSKAIGDAEW 393
>gi|296215642|ref|XP_002754212.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 1
[Callithrix jacchus]
Length = 391
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 318 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 375
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 376 NGRDYIFSKAIGDAEW 391
>gi|195503814|ref|XP_002098811.1| GE23726 [Drosophila yakuba]
gi|194184912|gb|EDW98523.1| GE23726 [Drosophila yakuba]
Length = 366
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 300 EEEPLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 357
Query: 378 NKATGEFDF 386
K+ G+ ++
Sbjct: 358 QKSNGDAEW 366
>gi|449542726|gb|EMD33704.1| hypothetical protein CERSUDRAFT_117780 [Ceriporiopsis subvermispora
B]
Length = 300
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+V +DKV R K++WKC LKDG++HIN KD LF K TGEF++
Sbjct: 258 IVFCTYDKVARVKNKWKCILKDGMIHINGKDYLFAKCTGEFEW 300
>gi|126282183|ref|XP_001366986.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Monodelphis domestica]
Length = 377
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 311 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 368
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 369 SKAIGDAEW 377
>gi|410962779|ref|XP_003987946.1| PREDICTED: transcription initiation factor IIA subunit 1 [Felis
catus]
Length = 349
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 283 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIF 340
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 341 SKAIGDAEW 349
>gi|347921128|ref|NP_001026378.2| transcription initiation factor IIA subunit 1 [Gallus gallus]
gi|121308873|dbj|BAF43533.1| general transcription facter IIA subunit 1 variant 1 [Gallus
gallus]
Length = 377
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 311 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 368
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 369 SKAIGDAEW 377
>gi|390177656|ref|XP_003736447.1| GA19238, isoform C [Drosophila pseudoobscura pseudoobscura]
gi|388859137|gb|EIM52520.1| GA19238, isoform C [Drosophila pseudoobscura pseudoobscura]
Length = 317
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 251 EEEPLNSEDD--VTDEDSTETFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 308
Query: 378 NKATGEFDF 386
K+ G+ ++
Sbjct: 309 QKSNGDAEW 317
>gi|226958572|ref|NP_113568.2| transcription initiation factor IIA subunit 1 isoform 1 [Mus
musculus]
gi|67462078|sp|Q99PM3.2|TF2AA_MOUSE RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; Contains: RecName: Full=Transcription initiation
factor IIA alpha chain; AltName: Full=TFIIA p35 subunit;
Contains: RecName: Full=Transcription initiation factor
IIA beta chain; AltName: Full=TFIIA p19 subunit
gi|148687004|gb|EDL18951.1| general transcription factor II A, 1, isoform CRA_b [Mus musculus]
Length = 378
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 305 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 362
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 363 NGRDYIFSKAIGDAEW 378
>gi|410916155|ref|XP_003971552.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 2 [Takifugu rubripes]
Length = 384
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN ++DD D+ DQ E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 318 EEEPLN-SEDDVSDEEDQ-ELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 375
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 376 SKAIGDAEW 384
>gi|148687003|gb|EDL18950.1| general transcription factor II A, 1, isoform CRA_a [Mus musculus]
Length = 368
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 295 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 352
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 353 NGRDYIFSKAIGDAEW 368
>gi|410916157|ref|XP_003971553.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 3 [Takifugu rubripes]
Length = 373
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN ++DD D+ DQ E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 307 EEEPLN-SEDDVSDEEDQ-ELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 364
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 365 SKAIGDAEW 373
>gi|355693872|gb|AER99480.1| proteinral transcription factor IIA, 1, 19/37kDa [Mustela putorius
furo]
Length = 358
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 52/73 (71%), Gaps = 4/73 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 286 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 343
Query: 371 NNKDILFNKATGE 383
N +D +F+KA G+
Sbjct: 344 NGRDYIFSKAIGD 356
>gi|327259290|ref|XP_003214471.1| PREDICTED: stonin-2-like [Anolis carolinensis]
Length = 1247
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 1181 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 1238
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 1239 SKAIGDAEW 1247
>gi|449274838|gb|EMC83916.1| Transcription initiation factor IIA subunit 1, partial [Columba
livia]
Length = 367
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 51/69 (73%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 301 EEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 358
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 359 SKAIGDAEW 367
>gi|390177658|ref|XP_003736448.1| GA19238, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388859138|gb|EIM52521.1| GA19238, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 359
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 293 EEEPLNSEDD--VTDEDSTETFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 350
Query: 378 NKATGEFDF 386
K+ G+ ++
Sbjct: 351 QKSNGDAEW 359
>gi|396481519|ref|XP_003841259.1| hypothetical protein LEMA_P091890.1 [Leptosphaeria maculans JN3]
gi|312217833|emb|CBX97780.1| hypothetical protein LEMA_P091890.1 [Leptosphaeria maculans JN3]
Length = 391
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 315 EDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWKCALKDGIMHINN 372
E+D D+ +N + DD D+++ G+ + + +L +DKV R K++WKC LKDGI+ N
Sbjct: 318 EEDPDDAINSDLDDPEDELNDGDNSDDDMVDYMLCTYDKVQRVKNKWKCTLKDGILTTNK 377
Query: 373 KDILFNKATGEFDF 386
K+ LF+KA GEF++
Sbjct: 378 KEYLFHKANGEFEW 391
>gi|213404368|ref|XP_002172956.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
gi|212001003|gb|EEB06663.1| conserved hypothetical protein [Schizosaccharomyces japonicus
yFS275]
Length = 372
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 332 DVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ ++G ++ Q +VL +DKV R K++WKC LKDGI+ +N KD LF KA GEF++
Sbjct: 318 ETEEGSDIG-QAIVLCLYDKVNRNKNKWKCVLKDGIVGVNGKDYLFFKANGEFEW 371
>gi|367052443|ref|XP_003656600.1| hypothetical protein THITE_2121465 [Thielavia terrestris NRRL 8126]
gi|347003865|gb|AEO70264.1| hypothetical protein THITE_2121465 [Thielavia terrestris NRRL 8126]
Length = 392
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 349 HMMLCMYDKVQRVKNKWKCILKDGVLTVNGKEYVFHKATGEYEW 392
>gi|410916153|ref|XP_003971551.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 1 [Takifugu rubripes]
Length = 359
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN ++DD D+ DQ E +T+++V+ Q+DK+ R+K++WK LKDGIM++N +D +F
Sbjct: 293 EEEPLN-SEDDVSDEEDQ-ELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYVF 350
Query: 378 NKATGEFDF 386
+KA G+ ++
Sbjct: 351 SKAIGDAEW 359
>gi|198451436|ref|XP_001358368.2| GA19238, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|198131489|gb|EAL27507.2| GA19238, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 356
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F
Sbjct: 290 EEEPLNSEDD--VTDEDSTETFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVF 347
Query: 378 NKATGEFDF 386
K+ G+ ++
Sbjct: 348 QKSNGDAEW 356
>gi|302409934|ref|XP_003002801.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261358834|gb|EEY21262.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 416
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 373 HIMLCMYDKVQRVKNKWKCVLKDGVLTVNGKEYVFHKATGEYEW 416
>gi|400601848|gb|EJP69473.1| transcription factor IIA [Beauveria bassiana ARSEF 2860]
Length = 358
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 315 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 358
>gi|116182054|ref|XP_001220876.1| hypothetical protein CHGG_01655 [Chaetomium globosum CBS 148.51]
gi|88185952|gb|EAQ93420.1| hypothetical protein CHGG_01655 [Chaetomium globosum CBS 148.51]
Length = 386
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 35/44 (79%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F KATGE+++
Sbjct: 343 HMMLCMYDKVQRVKNKWKCVLKDGVLTVNGKEYVFTKATGEYEW 386
>gi|322712087|gb|EFZ03660.1| transcription factor TFIIA complex subunit Toa1, putative
[Metarhizium anisopliae ARSEF 23]
Length = 357
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 314 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 357
>gi|58262280|ref|XP_568550.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|134118844|ref|XP_771925.1| hypothetical protein CNBN1050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254529|gb|EAL17278.1| hypothetical protein CNBN1050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230724|gb|AAW47033.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 211
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 332 DVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
DVD GE+ N +V +DKV R K++WK KDG++H+N KD LF K GEF++
Sbjct: 157 DVDGGEDENDVDIVFCVYDKVQRVKNKWKTVFKDGMIHLNGKDYLFAKCNGEFEW 211
>gi|310790026|gb|EFQ25559.1| transcription factor IIA [Glomerella graminicola M1.001]
Length = 375
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 332 HIMLCMYDKVQRVKNKWKCVLKDGVLTVNGKEYVFHKATGEYEW 375
>gi|405123855|gb|AFR98618.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 210
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 332 DVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
DVD GE+ N +V +DKV R K++WK KDG++H+N KD LF K GEF++
Sbjct: 156 DVDGGEDENDVDIVFCVYDKVQRVKNKWKTVFKDGMIHLNGKDYLFAKCNGEFEW 210
>gi|346971770|gb|EGY15222.1| hypothetical protein VDAG_06076 [Verticillium dahliae VdLs.17]
Length = 412
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 369 HIMLCMYDKVQRVKNKWKCVLKDGVLTVNGKEYVFHKATGEYEW 412
>gi|157114954|ref|XP_001652503.1| tfiia large subunit [Aedes aegypti]
gi|108877133|gb|EAT41358.1| AAEL007022-PA [Aedes aegypti]
Length = 367
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIM+I KD +F
Sbjct: 301 EEEPLNSEDD--VTDEDASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNITGKDYVF 358
Query: 378 NKATGEFDF 386
K+ G+ ++
Sbjct: 359 QKSNGDAEW 367
>gi|322695934|gb|EFY87734.1| transcription factor TFIIA complex subunit Toa1, putative
[Metarhizium acridum CQMa 102]
Length = 363
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 320 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 363
>gi|347968941|ref|XP_311940.5| AGAP002958-PA [Anopheles gambiae str. PEST]
gi|333467770|gb|EAA07559.5| AGAP002958-PA [Anopheles gambiae str. PEST]
Length = 516
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIMHI KD +F K+
Sbjct: 453 PLNSEDD--VTDEDASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMHIGGKDYVFQKS 510
Query: 381 TGEFDF 386
G+ ++
Sbjct: 511 NGDAEW 516
>gi|170032710|ref|XP_001844223.1| TFIIA [Culex quinquefasciatus]
gi|167873053|gb|EDS36436.1| TFIIA [Culex quinquefasciatus]
Length = 304
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
++EPLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIM+I+ KD +F
Sbjct: 238 EEEPLNSEDD--VTDEDASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNISGKDYVF 295
Query: 378 NKATGEFDF 386
K+ G+ ++
Sbjct: 296 QKSNGDAEW 304
>gi|66803983|ref|XP_635803.1| transcription factor IIA, large chain [Dictyostelium discoideum
AX4]
gi|74851854|sp|Q54G80.1|TF2AA_DICDI RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit 1
gi|60464129|gb|EAL62290.1| transcription factor IIA, large chain [Dictyostelium discoideum
AX4]
Length = 310
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
+H VL Q++KV+R K++ KC KDGIMH+N KD LFNKA GE
Sbjct: 265 EHFVLCQYEKVSRIKNKRKCNFKDGIMHLNGKDTLFNKANGEM 307
>gi|348506372|ref|XP_003440733.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Oreochromis niloticus]
Length = 375
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 52/76 (68%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E T ++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 302 GAEDGQVEEEPLNSGDD--VSDEEDQELFETDNVVVCQYDKIHRSKNKWKFHLKDGIMNL 359
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 360 NGRDYVFSKAIGDAEW 375
>gi|380487602|emb|CCF37932.1| transcription factor IIA [Colletotrichum higginsianum]
Length = 380
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 337 HIMLCMYDKVQRVKNKWKCILKDGVLTVNGKEYVFHKATGEYEW 380
>gi|321265542|ref|XP_003197487.1| general RNA polymerase II transcription factor [Cryptococcus gattii
WM276]
gi|317463967|gb|ADV25700.1| General RNA polymerase II transcription factor, putative
[Cryptococcus gattii WM276]
Length = 210
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 332 DVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
DVD GE+ N +V +DKV R K++WK KDG++H+N KD LF K GEF++
Sbjct: 156 DVDGGEDDNDVDIVFCVYDKVQRVKNKWKTVFKDGMIHLNGKDYLFAKCNGEFEW 210
>gi|154282827|ref|XP_001542209.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410389|gb|EDN05777.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 445
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 311 NDAAEDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGI 367
N E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI
Sbjct: 367 NTGREEADEDAINSDLDDSEDMLDDSNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGI 425
Query: 368 MHINNKDILFNKATGEFDF 386
+ K+ +F+K GEF++
Sbjct: 426 LTSGGKEYVFHKGQGEFEW 444
>gi|156053762|ref|XP_001592807.1| hypothetical protein SS1G_05728 [Sclerotinia sclerotiorum 1980]
gi|154703509|gb|EDO03248.1| hypothetical protein SS1G_05728 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 475
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC +KDG++ +N K+ +F+KATGE+++
Sbjct: 432 HIMLCMYDKVQRVKNKWKCVMKDGVLTVNGKEYVFHKATGEYEW 475
>gi|347968943|ref|XP_003436325.1| AGAP002958-PB [Anopheles gambiae str. PEST]
gi|333467771|gb|EGK96688.1| AGAP002958-PB [Anopheles gambiae str. PEST]
Length = 224
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIMHI KD +F K+
Sbjct: 161 PLNSEDD--VTDEDASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMHIGGKDYVFQKS 218
Query: 381 TGEFDF 386
G+ ++
Sbjct: 219 NGDAEW 224
>gi|19112462|ref|NP_595670.1| transcription factor TFIIA complex large subunit Toa1 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|74625878|sp|Q9USU9.1|TOA1_SCHPO RecName: Full=Transcription initiation factor IIA large subunit;
Short=TFIIA large subunit
gi|6018693|emb|CAB57938.1| transcription factor TFIIA complex large subunit Toa1 (predicted)
[Schizosaccharomyces pombe]
Length = 369
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 252 ASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVV--------------NEDYNIVNTPAP 297
A+S +PQ DG I D DD S N + + + N I T
Sbjct: 226 ANSRNDVPQTDGAIHD-LDDAGSPSNFESNRFAIAQKADAEIYEVLKKNRILQIDGTIED 284
Query: 298 NDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKS 357
N+ + P ++A D D+P D DE + ++G ++ Q +VL +DKV K+
Sbjct: 285 NEDEKKPPVDTPSDEAINSDLDDP----DSDEAPETEEGSDIG-QAIVLCLYDKVNHHKN 339
Query: 358 RWKCALKDGIMHINNKDILFNKATGEFDF 386
+WKC +DG++ +N KD LF KA GEF++
Sbjct: 340 KWKCVFRDGVVGVNGKDYLFFKANGEFEW 368
>gi|346321639|gb|EGX91238.1| transcription factor TFIIA complex subunit Toa1, putative
[Cordyceps militaris CM01]
Length = 436
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 393 HIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 436
>gi|367018696|ref|XP_003658633.1| hypothetical protein MYCTH_2294640 [Myceliophthora thermophila ATCC
42464]
gi|347005900|gb|AEO53388.1| hypothetical protein MYCTH_2294640 [Myceliophthora thermophila ATCC
42464]
Length = 400
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 35/44 (79%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F KATGE+++
Sbjct: 357 HMMLCMYDKVQRVKNKWKCILKDGVLTVNGKEYVFAKATGEYEW 400
>gi|429853635|gb|ELA28695.1| transcription factor tfiia complex subunit [Colletotrichum
gloeosporioides Nara gc5]
Length = 367
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 324 HIMLCMYDKVQRVKNKWKCILKDGVLTVNGKEYVFHKATGEYEW 367
>gi|148670779|gb|EDL02726.1| mCG50192 [Mus musculus]
Length = 382
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 51/70 (72%), Gaps = 4/70 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD+L D + E +T+++V+ Q+DK+ R+K++WK LKDG+M++
Sbjct: 300 GAEDGQVEEEPLN--SDDDLSDEEGQEPFDTENVVVCQYDKIHRSKNKWKFHLKDGVMNL 357
Query: 371 NNKDILFNKA 380
N +D +F+KA
Sbjct: 358 NGRDYIFSKA 367
>gi|38492544|pdb|1NVP|C Chain C, Human TfiiaTBPDNA COMPLEX
Length = 76
Score = 65.1 bits (157), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 3 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 60
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 61 NGRDYIFSKAIGDAEW 76
>gi|254584188|ref|XP_002497662.1| ZYRO0F10692p [Zygosaccharomyces rouxii]
gi|238940555|emb|CAR28729.1| ZYRO0F10692p [Zygosaccharomyces rouxii]
Length = 243
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 3/66 (4%)
Query: 322 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDGI+ +N KD F K+
Sbjct: 179 LDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGIVTVNRKDYTFQKS 236
Query: 381 TGEFDF 386
E ++
Sbjct: 237 QVEAEW 242
>gi|325652066|ref|NP_001191795.1| TFIIA-alpha and beta-like factor [Gallus gallus]
Length = 493
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN +DD + D+D + +T ++++ Q++K+ R+K++WK LKDG+M
Sbjct: 422 QTDVVEED---PLNSDDD--VSDLDIADLFDTNNVIVCQYEKIHRSKNKWKFFLKDGVMS 476
Query: 370 INNKDILFNKATGEFDF 386
N KD +F KA G+ ++
Sbjct: 477 FNGKDYVFAKAVGDAEW 493
>gi|406859010|gb|EKD12083.1| transcription factor IIA [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 487
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC +KDG++ +N K+ +F+KA+GE+++
Sbjct: 444 HIMLCMYDKVQRVKNKWKCVMKDGVLTVNGKEYVFHKASGEYEW 487
>gi|393217149|gb|EJD02638.1| transcription factor IIA, alpha/beta subunit [Fomitiporia
mediterranea MF3/22]
Length = 293
Score = 65.1 bits (157), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 331 DDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++ +Q L +V +DKV R K++WKC LKDG++H+N KD LF + T EF++
Sbjct: 238 NEEEQEGALGETDIVFCTYDKVARVKNKWKCVLKDGMIHVNGKDYLFGRCTCEFEW 293
>gi|24650582|ref|NP_733208.1| transcription factor IIA L, isoform C [Drosophila melanogaster]
gi|23172422|gb|AAN14106.1| transcription factor IIA L, isoform C [Drosophila melanogaster]
Length = 324
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 261 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 318
Query: 381 TGEFDF 386
G+ ++
Sbjct: 319 NGDAEW 324
>gi|430812851|emb|CCJ29749.1| unnamed protein product [Pneumocystis jirovecii]
Length = 307
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 56/99 (56%), Gaps = 14/99 (14%)
Query: 295 PAPNDIQASTPAV-VTQNDAAEDD------DDEPLNENDDDELDDVDQGEELNTQHLVLA 347
P + P+V +TQ D + D D EP N N +D ++ D G+ LVL
Sbjct: 216 PVDMSLHLVQPSVSLTQTDGMDSDSINSDLDSEP-NSNPEDGPENDDNGQ------LVLC 268
Query: 348 QFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+DKV RTK++WKC LKDGI+ + KD LF +A GEF++
Sbjct: 269 LYDKVQRTKNKWKCVLKDGIIGMGGKDYLFMRANGEFEW 307
>gi|427786209|gb|JAA58556.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 312
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 52/80 (65%), Gaps = 5/80 (6%)
Query: 310 QNDAAED---DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 366
Q+D ED ++ EPLN +DD + D + E ++V+ Q+DK++R+++RWK KDG
Sbjct: 235 QDDENEDGPQEEVEPLNSDDD--VSDEEATENFEIDNVVVCQYDKISRSRNRWKFHFKDG 292
Query: 367 IMHINNKDILFNKATGEFDF 386
IM++ KD +F KA G+ ++
Sbjct: 293 IMNLQGKDYVFQKAVGDAEW 312
>gi|330804645|ref|XP_003290303.1| hypothetical protein DICPUDRAFT_92459 [Dictyostelium purpureum]
gi|325079590|gb|EGC33183.1| hypothetical protein DICPUDRAFT_92459 [Dictyostelium purpureum]
Length = 309
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
+H VL Q++KVTR K++ KC KDGIMH+N KD LF+KA GE
Sbjct: 264 EHYVLCQYEKVTRIKNKRKCIFKDGIMHLNGKDSLFHKANGEV 306
>gi|452983097|gb|EME82855.1| hypothetical protein MYCFIDRAFT_64208 [Pseudocercospora fijiensis
CIRAD86]
Length = 396
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 18/101 (17%)
Query: 302 ASTPAVVTQNDAAEDDDDEPLNENDDDELDDV----------------DQGEELNTQHLV 345
++TP + Q D D+DDE + D+D+ + + D +EL +
Sbjct: 298 SATPPFIPQLDGDADEDDEKPDIKDEDDENAINSDLDDSDDDGAGAMGDDEDELGDS--I 355
Query: 346 LAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
L +DKV R K++WKC LKDG+M +N K+ +F+K GEF++
Sbjct: 356 LCTYDKVQRVKNKWKCTLKDGVMSVNGKEWVFHKGMGEFEW 396
>gi|12313735|gb|AAG50431.1|AF250834_1 TFIIA alpha/beta [Mus musculus]
Length = 378
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 55/77 (71%), Gaps = 6/77 (7%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEEL-NTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
AED ++EPLN DD ++ G+EL + +++V+ Q+DK+ R+K++WK LKDGIM+
Sbjct: 305 GAEDGQVEEEPLNSEDDVSGEE---GQELFDAENVVVCQYDKIHRSKNKWKFHLKDGIMN 361
Query: 370 INNKDILFNKATGEFDF 386
+N +D +F+KA G+ ++
Sbjct: 362 LNGRDYIFSKAIGDAEW 378
>gi|390362858|ref|XP_003730243.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Strongylocentrotus purpuratus]
Length = 139
Score = 64.7 bits (156), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 313 AAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 372
AA +D+++PLN DD + D D + ++++V+ Q+DK+ R +++WK LK GIM++
Sbjct: 68 AAGEDEEDPLNSADD--VSDEDPADLFESENVVVCQYDKINRNRNKWKFTLKHGIMNLKG 125
Query: 373 KDILFNKATGEFDF 386
KD +FNK+TG+ D+
Sbjct: 126 KDYVFNKSTGDADW 139
>gi|444320645|ref|XP_004180979.1| hypothetical protein TBLA_0E04050 [Tetrapisispora blattae CBS 6284]
gi|387514022|emb|CCH61460.1| hypothetical protein TBLA_0E04050 [Tetrapisispora blattae CBS 6284]
Length = 255
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 322 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
L+++DDD L + +GE+ ++LVL ++KVTRTK+RWKC+LKDGI IN KD F KA
Sbjct: 191 LDDSDDDYL--ISEGEDDGPDENLVLCLYEKVTRTKARWKCSLKDGIATINRKDYTFQKA 248
Query: 381 TGEFDF 386
E ++
Sbjct: 249 QVEAEW 254
>gi|261189957|ref|XP_002621389.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
dermatitidis SLH14081]
gi|239591625|gb|EEQ74206.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
dermatitidis SLH14081]
Length = 451
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 315 EDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 371
E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI+
Sbjct: 377 EEADEDAINSDLDDSEDMLDDHNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGILTSG 435
Query: 372 NKDILFNKATGEFDF 386
K+ +F+K GEF++
Sbjct: 436 GKEYVFHKGQGEFEW 450
>gi|452955|gb|AAB28821.1| TFIIA-L [Drosophila sp.]
Length = 366
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 303 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 360
Query: 381 TGEFDF 386
G+ ++
Sbjct: 361 NGDAEW 366
>gi|17136922|ref|NP_476996.1| transcription factor IIA L, isoform B [Drosophila melanogaster]
gi|23172421|gb|AAN14105.1| transcription factor IIA L, isoform B [Drosophila melanogaster]
gi|323429949|gb|ADX64761.1| LP04237p [Drosophila melanogaster]
Length = 363
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 300 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 357
Query: 381 TGEFDF 386
G+ ++
Sbjct: 358 NGDAEW 363
>gi|239612843|gb|EEQ89830.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
dermatitidis ER-3]
Length = 438
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 315 EDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 371
E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI+
Sbjct: 364 EEADEDAINSDLDDSEDMLDDHNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGILTSG 422
Query: 372 NKDILFNKATGEFDF 386
K+ +F+K GEF++
Sbjct: 423 GKEYVFHKGQGEFEW 437
>gi|17136920|ref|NP_476995.1| transcription factor IIA L, isoform A [Drosophila melanogaster]
gi|71153182|sp|P52654.2|TF2AA_DROME RecName: Full=Transcription initiation factor IIA subunit 1;
AltName: Full=General transcription factor IIA subunit
1; AltName: Full=dTFIIA-L; Contains: RecName:
Full=Transcription initiation factor IIA alpha chain;
AltName: Full=TFIIA p30 subunit; Contains: RecName:
Full=Transcription initiation factor IIA beta chain;
AltName: Full=TFIIA p20 subunit
gi|16769308|gb|AAL28873.1| LD24213p [Drosophila melanogaster]
gi|23172420|gb|AAF56687.2| transcription factor IIA L, isoform A [Drosophila melanogaster]
gi|220952474|gb|ACL88780.1| TfIIA-L-PA [synthetic construct]
Length = 366
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 303 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 360
Query: 381 TGEFDF 386
G+ ++
Sbjct: 361 NGDAEW 366
>gi|367009180|ref|XP_003679091.1| hypothetical protein TDEL_0A05480 [Torulaspora delbrueckii]
gi|359746748|emb|CCE89880.1| hypothetical protein TDEL_0A05480 [Torulaspora delbrueckii]
Length = 257
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 321 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDGI +N KD F K
Sbjct: 192 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGIATVNRKDYTFQK 249
Query: 380 ATGEFDF 386
+ E ++
Sbjct: 250 SQVEAEW 256
>gi|195349918|ref|XP_002041489.1| GM10381 [Drosophila sechellia]
gi|194123184|gb|EDW45227.1| GM10381 [Drosophila sechellia]
Length = 366
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 303 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 360
Query: 381 TGEFDF 386
G+ ++
Sbjct: 361 NGDAEW 366
>gi|313661529|gb|ADR71719.1| AT09437p [Drosophila melanogaster]
Length = 376
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 313 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 370
Query: 381 TGEFDF 386
G+ ++
Sbjct: 371 NGDAEW 376
>gi|196016011|ref|XP_002117860.1| hypothetical protein TRIADDRAFT_61892 [Trichoplax adhaerens]
gi|190579529|gb|EDV19622.1| hypothetical protein TRIADDRAFT_61892 [Trichoplax adhaerens]
Length = 200
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 313 AAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 372
+A+ +DDEPLN +DD +D E + ++++ Q+DKVTR +S+WK LKDGIM+I
Sbjct: 128 SAKLEDDEPLNTDDDASDEDDIDSFECD--NVIVCQYDKVTRARSKWKLHLKDGIMNIGG 185
Query: 373 KDILFNKATGEFDF 386
D +FNKA+G+ D+
Sbjct: 186 NDYVFNKASGDCDW 199
>gi|189197165|ref|XP_001934920.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187980868|gb|EDU47494.1| predicted protein [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 389
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 315 EDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWKCALKDGIMHINN 372
E+D D+ +N + DD D++ G+ + + +L +DKV R K++WKC LKDGI+ N
Sbjct: 316 EEDPDDAINSDLDDSEDELGDGDNSDDDMVDYMLCTYDKVQRVKNKWKCTLKDGILTTNK 375
Query: 373 KDILFNKATGEFDF 386
K+ LF+KA E +F
Sbjct: 376 KEYLFHKANAELEF 389
>gi|308800350|ref|XP_003074956.1| Tf2al transcription factor IIa large subunit 3, TFIIA3, putative
(IC) [Ostreococcus tauri]
gi|119358839|emb|CAL52226.2| Tf2al transcription factor IIa large subunit 3, TFIIA3, putative
(IC) [Ostreococcus tauri]
Length = 179
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 320 EPLNENDDDEL--DDVDQGEELN--TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 375
+P+ + D + L D D E+ T +LVL+QF+KV RTK++WKC+ KDGIM +N +
Sbjct: 109 QPVCQKDTESLSSDSEDNTLEMEPPTSNLVLSQFEKVARTKNKWKCSFKDGIMLLNGSEY 168
Query: 376 LFNKATGEF 384
+F KA EF
Sbjct: 169 VFGKANAEF 177
>gi|330923534|ref|XP_003300277.1| hypothetical protein PTT_11476 [Pyrenophora teres f. teres 0-1]
gi|311325663|gb|EFQ91622.1| hypothetical protein PTT_11476 [Pyrenophora teres f. teres 0-1]
Length = 383
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 305 PAVVTQNDAA--EDDDDEPLNENDDDELDDVDQGEELNTQHL--VLAQFDKVTRTKSRWK 360
PA +D A E+D D+ +N + DD D++ G+ + + +L +DKV R K++WK
Sbjct: 298 PARFDGDDEAKPEEDPDDAINSDLDDSEDELGDGDNSDDDMVDYMLCTYDKVQRVKNKWK 357
Query: 361 CALKDGIMHINNKDILFNKATGEFDF 386
C LKDGI+ N K+ LF+KA E +F
Sbjct: 358 CTLKDGILTTNKKEYLFHKANAELEF 383
>gi|145342451|ref|XP_001416196.1| transcription factor IIa large subunit 3, TFIIA3, putative
[Ostreococcus lucimarinus CCE9901]
gi|144576421|gb|ABO94489.1| transcription factor IIa large subunit 3, TFIIA3, putative
[Ostreococcus lucimarinus CCE9901]
Length = 182
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 35/44 (79%)
Query: 341 TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
T +LVL+QF+KV RTK++WKCA +DG+M +N + +F KAT EF
Sbjct: 137 TSNLVLSQFEKVGRTKNKWKCAFRDGVMLLNGTEYVFGKATAEF 180
>gi|194745758|ref|XP_001955354.1| GF16279 [Drosophila ananassae]
gi|190628391|gb|EDV43915.1| GF16279 [Drosophila ananassae]
Length = 364
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 301 PLNSEDD--VTDEDSAEMFETDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 358
Query: 381 TGEFDF 386
G+ ++
Sbjct: 359 NGDAEW 364
>gi|327352009|gb|EGE80866.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
dermatitidis ATCC 18188]
Length = 476
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 49/75 (65%), Gaps = 4/75 (5%)
Query: 315 EDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHIN 371
E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI+
Sbjct: 402 EEADEDAINSDLDDSEDMLDDHNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGILTSG 460
Query: 372 NKDILFNKATGEFDF 386
K+ +F+K GEF++
Sbjct: 461 GKEYVFHKGQGEFEW 475
>gi|389741832|gb|EIM83020.1| transcription factor IIA alpha/beta subunit [Stereum hirsutum
FP-91666 SS1]
Length = 290
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEE--LNTQHLVLAQFDKVTRTKSRWKCALKDGI 367
Q AA+ DD+ ++ DD + + + EE L +V +DKV R K++WKC LK+G+
Sbjct: 216 QQPAAQADDEAINSDLDDSDSEGSEDPEEGGLGETDIVFCTYDKVARVKNKWKCVLKEGM 275
Query: 368 MHINNKDILFNKATG 382
+H+N KD LF K +G
Sbjct: 276 IHVNGKDYLFGKCSG 290
>gi|366991537|ref|XP_003675534.1| hypothetical protein NCAS_0C01780 [Naumovozyma castellii CBS 4309]
gi|342301399|emb|CCC69168.1| hypothetical protein NCAS_0C01780 [Naumovozyma castellii CBS 4309]
Length = 242
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 53/74 (71%), Gaps = 6/74 (8%)
Query: 317 DDDE---PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 372
D+DE L+++DDD L + +GE+ ++L+L +DKVTRTK+RWKC+LKDGI+ IN+
Sbjct: 170 DNDEVGSELDDSDDDYL--ISEGEDDGPDENLMLCLYDKVTRTKARWKCSLKDGIVTINH 227
Query: 373 KDILFNKATGEFDF 386
KD F KA E ++
Sbjct: 228 KDYSFQKAQVEAEW 241
>gi|195390121|ref|XP_002053717.1| GJ24046 [Drosophila virilis]
gi|194151803|gb|EDW67237.1| GJ24046 [Drosophila virilis]
Length = 379
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 316 PLNSEDD--VTDEDSAEVFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 373
Query: 381 TGEFDF 386
G+ ++
Sbjct: 374 NGDAEW 379
>gi|281207897|gb|EFA82076.1| transcription factor IIA [Polysphondylium pallidum PN500]
Length = 339
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
+H VL Q++KVTR K++ KC KDG+MH+N +D LF+KA EF
Sbjct: 294 EHFVLCQYEKVTRVKNKRKCNFKDGVMHLNGRDSLFHKANAEF 336
>gi|195112756|ref|XP_002000938.1| GI22255 [Drosophila mojavensis]
gi|193917532|gb|EDW16399.1| GI22255 [Drosophila mojavensis]
Length = 381
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 318 PLNSEDD--VTDEDSAEVFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 375
Query: 381 TGEFDF 386
G+ ++
Sbjct: 376 NGDAEW 381
>gi|115496566|ref|NP_001070039.1| TFIIA-alpha and beta-like factor [Danio rerio]
gi|115313627|gb|AAI24542.1| Zgc:154100 [Danio rerio]
gi|182891014|gb|AAI64474.1| Zgc:154100 protein [Danio rerio]
Length = 376
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 320 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
+PLN DD + + D E +T+++++ Q+DK+ R+K+RWK LKDG+M KD +F+K
Sbjct: 312 DPLNSGDD--VSEQDIPEIFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCYGGKDYVFSK 369
Query: 380 ATGEFDF 386
A GE ++
Sbjct: 370 AVGEAEW 376
>gi|195053674|ref|XP_001993751.1| GH19494 [Drosophila grimshawi]
gi|193895621|gb|EDV94487.1| GH19494 [Drosophila grimshawi]
Length = 369
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 306 PLNSEDD--VTDEDSAEVFETDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 363
Query: 381 TGEFDF 386
G+ ++
Sbjct: 364 NGDAEW 369
>gi|403217723|emb|CCK72216.1| hypothetical protein KNAG_0J01350 [Kazachstania naganishii CBS
8797]
Length = 265
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 321 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG+ IN +D F K
Sbjct: 200 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVATINRRDYTFQK 257
Query: 380 ATGEFDF 386
A E ++
Sbjct: 258 AQVEAEW 264
>gi|449302913|gb|EMC98921.1| hypothetical protein BAUCODRAFT_385117 [Baudoinia compniacensis
UAMH 10762]
Length = 386
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 1/73 (1%)
Query: 315 EDDDDEPLNENDDDELDDVDQG-EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 373
EDD+D ++ D DE + G EE + +L +DKV R K++WKC LKDG+M I+ K
Sbjct: 314 EDDEDAINSDLDSDEDPTGNIGDEEDDLGDTILCTYDKVQRVKNKWKCTLKDGVMSISGK 373
Query: 374 DILFNKATGEFDF 386
+ +F+K GEF++
Sbjct: 374 EWVFHKGMGEFEW 386
>gi|255721121|ref|XP_002545495.1| predicted protein [Candida tropicalis MYA-3404]
gi|240135984|gb|EER35537.1| predicted protein [Candida tropicalis MYA-3404]
Length = 268
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ L +DKV R KS+WKC+LK+GI +IN KD +FNKATGE ++
Sbjct: 225 QIALCLYDKVQRIKSKWKCSLKEGIANINGKDYVFNKATGECEW 268
>gi|407920741|gb|EKG13923.1| Transcription factor IIA alpha/beta subunit [Macrophomina
phaseolina MS6]
Length = 297
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 46/76 (60%), Gaps = 10/76 (13%)
Query: 311 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
N +D D+E + E DD+ G + +T ++ +DKV R K++WKC LKDG++
Sbjct: 232 NSDLDDSDEEQIQEGDDE-------GPQGDT---MICTYDKVQRVKNKWKCTLKDGVLST 281
Query: 371 NNKDILFNKATGEFDF 386
KD LF+KA GEF++
Sbjct: 282 GGKDYLFHKAQGEFEW 297
>gi|342883367|gb|EGU83880.1| hypothetical protein FOXB_05594 [Fusarium oxysporum Fo5176]
Length = 402
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 360 IMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 402
>gi|326481996|gb|EGE06006.1| transcription factor TFIIA complex subunit Toa1 [Trichophyton
equinum CBS 127.97]
Length = 430
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 11/80 (13%)
Query: 318 DDEPLNENDDDELDDV-----------DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 366
DD P+ ++DD++ + +QGE+ ++L +DKV R KS+WKC LKDG
Sbjct: 350 DDYPVKKDDDEDAINSDLDDPDDLLDEEQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDG 409
Query: 367 IMHINNKDILFNKATGEFDF 386
I+ + K+ +F+K TGEF++
Sbjct: 410 ILTSDGKEYVFHKGTGEFEW 429
>gi|315043172|ref|XP_003170962.1| hypothetical protein MGYG_06953 [Arthroderma gypseum CBS 118893]
gi|311344751|gb|EFR03954.1| hypothetical protein MGYG_06953 [Arthroderma gypseum CBS 118893]
Length = 413
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 38/53 (71%)
Query: 334 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+QGE+ ++L +DKV R KS+WKC LKDGI+ + K+ +F+K TGEF++
Sbjct: 360 EQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDGILTSDGKEYVFHKGTGEFEW 412
>gi|326473310|gb|EGD97319.1| transcription factor TFIIA complex subunit Toa1 [Trichophyton
tonsurans CBS 112818]
Length = 430
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 11/80 (13%)
Query: 318 DDEPLNENDDDELDDV-----------DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 366
DD P+ ++DD++ + +QGE+ ++L +DKV R KS+WKC LKDG
Sbjct: 350 DDYPVKKDDDEDAINSDLDDPDDLLDEEQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDG 409
Query: 367 IMHINNKDILFNKATGEFDF 386
I+ + K+ +F+K TGEF++
Sbjct: 410 ILTSDGKEYVFHKGTGEFEW 429
>gi|401839362|gb|EJT42619.1| TOA1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 279
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 321 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 214 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 271
Query: 380 ATGEFDF 386
A E ++
Sbjct: 272 AQVEAEW 278
>gi|365758296|gb|EHN00146.1| Toa1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 281
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 321 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 216 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 273
Query: 380 ATGEFDF 386
A E ++
Sbjct: 274 AQVEAEW 280
>gi|323307218|gb|EGA60501.1| Toa1p [Saccharomyces cerevisiae FostersO]
gi|349581354|dbj|GAA26512.1| K7_Toa1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 286
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 321 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 221 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 278
Query: 380 ATGEFDF 386
A E ++
Sbjct: 279 AQVEAEW 285
>gi|302927465|ref|XP_003054504.1| hypothetical protein NECHADRAFT_75297 [Nectria haematococca mpVI
77-13-4]
gi|256735445|gb|EEU48791.1| hypothetical protein NECHADRAFT_75297 [Nectria haematococca mpVI
77-13-4]
Length = 395
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 36/44 (81%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 352 NIMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 395
>gi|51013897|gb|AAT93242.1| YOR194C [Saccharomyces cerevisiae]
Length = 286
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 321 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 221 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 278
Query: 380 ATGEFDF 386
A E ++
Sbjct: 279 AQVEAEW 285
>gi|6324768|ref|NP_014837.1| Toa1p [Saccharomyces cerevisiae S288c]
gi|418108|sp|P32773.1|TOA1_YEAST RecName: Full=Transcription initiation factor IIA large subunit;
Short=TFIIA large subunit; AltName: Full=TFIIA 32 kDa
subunit
gi|73535265|pdb|1RM1|C Chain C, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex
gi|172893|gb|AAA19654.1| transcription factor IIA [Saccharomyces cerevisiae]
gi|1420463|emb|CAA99407.1| TOA1 [Saccharomyces cerevisiae]
gi|151945287|gb|EDN63530.1| transcription factor IIA subunit alpha [Saccharomyces cerevisiae
YJM789]
gi|190407510|gb|EDV10777.1| transcription initiation factor IIA large chain [Saccharomyces
cerevisiae RM11-1a]
gi|207341051|gb|EDZ69216.1| YOR194Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269564|gb|EEU04846.1| Toa1p [Saccharomyces cerevisiae JAY291]
gi|259149678|emb|CAY86482.1| Toa1p [Saccharomyces cerevisiae EC1118]
gi|285815076|tpg|DAA10969.1| TPA: Toa1p [Saccharomyces cerevisiae S288c]
gi|392296523|gb|EIW07625.1| Toa1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 286
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 321 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 221 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 278
Query: 380 ATGEFDF 386
A E ++
Sbjct: 279 AQVEAEW 285
>gi|408395922|gb|EKJ75093.1| hypothetical protein FPSE_04713 [Fusarium pseudograminearum CS3096]
Length = 410
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 368 IMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 410
>gi|365762877|gb|EHN04409.1| Toa1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 286
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 321 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 221 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 278
Query: 380 ATGEFDF 386
A E ++
Sbjct: 279 AQVEAEW 285
>gi|327295122|ref|XP_003232256.1| transcription factor TFIIA complex subunit Toa1 [Trichophyton
rubrum CBS 118892]
gi|326465428|gb|EGD90881.1| transcription factor TFIIA complex subunit Toa1 [Trichophyton
rubrum CBS 118892]
Length = 423
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 49/80 (61%), Gaps = 11/80 (13%)
Query: 318 DDEPLNENDDDEL-----------DDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 366
DD P+ ++DD++ D DQGE+ ++L +DKV R KS+WKC LKDG
Sbjct: 343 DDYPVKKDDDEDAINSDLDDPDDLLDEDQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDG 402
Query: 367 IMHINNKDILFNKATGEFDF 386
I+ + K+ +F+K TGEF++
Sbjct: 403 ILTSDGKEYVFHKGTGEFEW 422
>gi|401623541|gb|EJS41637.1| toa1p [Saccharomyces arboricola H-6]
Length = 281
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 321 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 216 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 273
Query: 380 ATGEFDF 386
A E ++
Sbjct: 274 AQVEAEW 280
>gi|46107550|ref|XP_380834.1| hypothetical protein FG00658.1 [Gibberella zeae PH-1]
Length = 413
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 371 IMLCMYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 413
>gi|134055805|emb|CAK37327.1| unnamed protein product [Aspergillus niger]
Length = 362
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 316 DDDDEPLNENDDDELDDV---DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 372
D+DDE +D D+ DD+ D E ++L +DKV R K++WKC LKDGI+
Sbjct: 289 DEDDEDAINSDLDDPDDLVAEDHDAEDAVGQVMLCTYDKVQRVKNKWKCTLKDGILTTGG 348
Query: 373 KDILFNKATGEFDF 386
K+ +F+K GEF++
Sbjct: 349 KEYVFHKGQGEFEW 362
>gi|195574328|ref|XP_002105141.1| GD21332 [Drosophila simulans]
gi|194201068|gb|EDX14644.1| GD21332 [Drosophila simulans]
Length = 115
Score = 62.8 bits (151), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 52 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 109
Query: 381 TGEFDF 386
G+ ++
Sbjct: 110 NGDAEW 115
>gi|320593678|gb|EFX06087.1| transcription factor tfiia complex subunit [Grosmannia clavigera
kw1407]
Length = 429
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 35/43 (81%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDG++ +N K+ +F+KATGE+++
Sbjct: 387 IMLCVYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKATGEYEW 429
>gi|402083854|gb|EJT78872.1| hypothetical protein GGTG_03966 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 403
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 34/42 (80%)
Query: 345 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+L +DKV R K++WKC LKDGI+ +N K+ +F+KATGE+++
Sbjct: 362 MLCLYDKVQRVKNKWKCTLKDGILTVNGKEYVFHKATGEYEW 403
>gi|302679224|ref|XP_003029294.1| hypothetical protein SCHCODRAFT_111312 [Schizophyllum commune H4-8]
gi|300102984|gb|EFI94391.1| hypothetical protein SCHCODRAFT_111312, partial [Schizophyllum
commune H4-8]
Length = 358
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 317 DDDEPLNENDDDELDDVDQ-GEELNTQ-----HLVLAQFDKVTRTKSRWKCALKDGIMHI 370
+DDE +N + DD D +Q GEE T +V +DKV R K++WKC LKDG++H+
Sbjct: 230 EDDEEINSDLDDSDSDGEQNGEEQATSGAADGDIVFCTYDKVQRVKNKWKCVLKDGVIHM 289
Query: 371 NNKDILFNKATG 382
N +D LF+K TG
Sbjct: 290 NGRDYLFSKCTG 301
>gi|410082483|ref|XP_003958820.1| hypothetical protein KAFR_0H02760 [Kazachstania africana CBS 2517]
gi|372465409|emb|CCF59685.1| hypothetical protein KAFR_0H02760 [Kazachstania africana CBS 2517]
Length = 268
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 48/66 (72%), Gaps = 3/66 (4%)
Query: 322 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
L+++DDD L + +GE+ ++L+L ++KVTRTK+RWKC+LKDGI IN+KD F KA
Sbjct: 204 LDDSDDDYL--ISEGEDDGPDENLMLCLYEKVTRTKARWKCSLKDGIATINHKDYTFQKA 261
Query: 381 TGEFDF 386
E ++
Sbjct: 262 QVEAEW 267
>gi|365986957|ref|XP_003670310.1| hypothetical protein NDAI_0E02500 [Naumovozyma dairenensis CBS 421]
gi|343769080|emb|CCD25067.1| hypothetical protein NDAI_0E02500 [Naumovozyma dairenensis CBS 421]
Length = 272
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 6/74 (8%)
Query: 317 DDDE---PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 372
D+DE L+++DDD L + +GE+ ++L+L +DKVTRTK+RWKC+LKDGI+ I +
Sbjct: 200 DNDEVGSELDDSDDDYL--ISEGEDDGPDENLMLCLYDKVTRTKARWKCSLKDGIVTIAH 257
Query: 373 KDILFNKATGEFDF 386
KD F KA E ++
Sbjct: 258 KDYSFQKAQVEAEW 271
>gi|326914931|ref|XP_003203776.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Meleagris
gallopavo]
Length = 493
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 51/77 (66%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN +DD + D+D + +T ++++ Q++K+ R+K++WK LKDG+M
Sbjct: 422 QTDIVEED---PLNSDDD--VSDLDIADLFDTNNVIVCQYEKIHRSKNKWKFFLKDGVMS 476
Query: 370 INNKDILFNKATGEFDF 386
+ KD +F KA G+ ++
Sbjct: 477 FDGKDYVFAKAVGDAEW 493
>gi|241690302|ref|XP_002411755.1| tfiia large subunit, putative [Ixodes scapularis]
gi|215504590|gb|EEC14084.1| tfiia large subunit, putative [Ixodes scapularis]
Length = 303
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 42/62 (67%)
Query: 325 NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
N DD++ D + E ++V+ Q+DK++R+++RWK KDGIM++ KD +F KA G+
Sbjct: 242 NSDDDVSDEEATENFEIDNVVVCQYDKISRSRNRWKFHFKDGIMNLQGKDYVFQKAVGDA 301
Query: 385 DF 386
++
Sbjct: 302 EW 303
>gi|296808367|ref|XP_002844522.1| transcription initiation factor TFIIA large subunit [Arthroderma
otae CBS 113480]
gi|238844005|gb|EEQ33667.1| transcription initiation factor TFIIA large subunit [Arthroderma
otae CBS 113480]
Length = 415
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 38/53 (71%)
Query: 334 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+QGE+ ++L +DKV R KS+WKC LKDGI+ + ++ +F+K TGEF++
Sbjct: 362 EQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDGILTSDGREYVFHKGTGEFEW 414
>gi|198414342|ref|XP_002131478.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 4
[Ciona intestinalis]
Length = 288
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 327 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
DD DD D E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 230 DDGSDD-DPVELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 288
>gi|367004725|ref|XP_003687095.1| hypothetical protein TPHA_0I01550 [Tetrapisispora phaffii CBS 4417]
gi|357525398|emb|CCE64661.1| hypothetical protein TPHA_0I01550 [Tetrapisispora phaffii CBS 4417]
Length = 258
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 47/66 (71%), Gaps = 3/66 (4%)
Query: 322 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
L+++DDD L + +GE+ ++L+L ++KVTRTK+RWKC+LKDGI IN +D F KA
Sbjct: 194 LDDSDDDYL--ISEGEDEGPDENLLLCLYEKVTRTKARWKCSLKDGIATINRRDYTFQKA 251
Query: 381 TGEFDF 386
E ++
Sbjct: 252 HVEAEW 257
>gi|198414338|ref|XP_002131456.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 2
[Ciona intestinalis]
Length = 299
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 327 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
DD DD D E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 241 DDGSDD-DPVELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 299
>gi|198414340|ref|XP_002131489.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 5
[Ciona intestinalis]
Length = 299
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 327 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
DD DD D E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 241 DDGSDD-DPVELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 299
>gi|345317847|ref|XP_001513745.2| PREDICTED: TFIIA-alpha and beta-like factor-like [Ornithorhynchus
anatinus]
Length = 384
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD DV + T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 313 QLDVVEED---PLNSGDDVSEQDVP--DLFETDNVIVCQYDKIHRSKNKWKFYLKDGVMC 367
Query: 370 INNKDILFNKATGEFDF 386
KD +F +ATG+ ++
Sbjct: 368 FGGKDYVFARATGDAEW 384
>gi|198414336|ref|XP_002131518.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 6
[Ciona intestinalis]
Length = 310
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 327 DDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
DD DD D E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 252 DDGSDD-DPVELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 310
>gi|300676802|gb|ADK26678.1| general transcription factor IIA, 1-like [Zonotrichia albicollis]
Length = 1191
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD + + D + +T ++++ Q++K+ RTK++WK LKDG+M
Sbjct: 1120 QIDIVEED---PLNSGDD--VSEQDIADLFDTDNVIVCQYEKIHRTKNKWKFYLKDGVMS 1174
Query: 370 INNKDILFNKATGEFDF 386
I KD +F KATG+ ++
Sbjct: 1175 IEGKDHVFAKATGDAEW 1191
>gi|198414334|ref|XP_002131466.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 3
[Ciona intestinalis]
Length = 321
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 337 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 272 ELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 321
>gi|198414332|ref|XP_002131438.1| PREDICTED: similar to general transcription factor IIA, 1 isoform 1
[Ciona intestinalis]
Length = 332
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 337 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
E +T ++V+ Q+DK+ R K RWK LK GIM++N KD++F KATGE ++
Sbjct: 283 ELFDTDNVVVCQYDKIHRAKCRWKFNLKVGIMNLNGKDLVFQKATGEAEW 332
>gi|156847136|ref|XP_001646453.1| hypothetical protein Kpol_1048p25 [Vanderwaltozyma polyspora DSM
70294]
gi|156117130|gb|EDO18595.1| hypothetical protein Kpol_1048p25 [Vanderwaltozyma polyspora DSM
70294]
Length = 298
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 51/74 (68%), Gaps = 6/74 (8%)
Query: 317 DDDE---PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINN 372
D+DE L+++DDD L + +GE+ ++L+L ++KVTRTK+RWKC+LKDG+ IN
Sbjct: 226 DNDEVGSELDDSDDDYL--ISEGEDDGPDENLLLCLYEKVTRTKARWKCSLKDGVATINR 283
Query: 373 KDILFNKATGEFDF 386
KD F KA E ++
Sbjct: 284 KDYTFQKANVEAEW 297
>gi|353238603|emb|CCA70544.1| related to TOA1-transcription factor TFIIA-L [Piriformospora indica
DSM 11827]
Length = 477
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ +DKVTR K+RWK +DG++H N KD LF + TGEFD+
Sbjct: 435 VTYCTYDKVTRVKTRWKVVFRDGMVHANGKDYLFGRCTGEFDW 477
>gi|395323340|gb|EJF55815.1| TFIIA-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 408
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 29/39 (74%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 382
+V +DKV R K++WKC LKDG++H+N KD LF K TG
Sbjct: 286 IVFCTYDKVARVKNKWKCVLKDGMIHVNGKDYLFAKCTG 324
>gi|344231344|gb|EGV63226.1| hypothetical protein CANTEDRAFT_123183 [Candida tenuis ATCC 10573]
gi|344231345|gb|EGV63227.1| hypothetical protein CANTEDRAFT_123183 [Candida tenuis ATCC 10573]
Length = 269
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
H++L +DKV R K++WKC+LK+GI IN +D +F KATGE ++
Sbjct: 226 HIMLCLYDKVQRIKNKWKCSLKEGIASINGRDYVFQKATGESEW 269
>gi|58865842|ref|NP_001012136.1| TFIIA-alpha and beta-like factor [Rattus norvegicus]
gi|51980533|gb|AAH82104.1| General transcription factor IIA, 1-like [Rattus norvegicus]
gi|149050446|gb|EDM02619.1| rCG61545 [Rattus norvegicus]
Length = 468
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q DA E+D PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M
Sbjct: 397 QIDALEED---PLNSGDD--VSEQDAPDLFDTDNVIVCQYDKIHRSKNRWKFYLKDGVMC 451
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA GE ++
Sbjct: 452 FGGRDYVFAKAIGEAEW 468
>gi|308503849|ref|XP_003114108.1| CRE-PQN-51 protein [Caenorhabditis remanei]
gi|308261493|gb|EFP05446.1| CRE-PQN-51 protein [Caenorhabditis remanei]
Length = 357
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 339 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ +++V+ QF+KV R +++WK LKDGIMHI+ KD F K TGE ++
Sbjct: 310 FDAENVVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 357
>gi|320038931|gb|EFW20866.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 363
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R KS+WKC LKDGI+ K+ +F+K TGEF++
Sbjct: 319 QVMLCTYDKVQRVKSKWKCTLKDGILTTGGKEYVFHKGTGEFEW 362
>gi|358332278|dbj|GAA50950.1| transcription initiation factor TFIIA large subunit [Clonorchis
sinensis]
Length = 588
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D + + ++V+ Q+DK+ R+++RW+ LKDGIM IN +D +F KA
Sbjct: 525 PLNSEDD--VSDEEPEVLFESDNVVVCQYDKIHRSRNRWRFHLKDGIMAINGRDHVFQKA 582
Query: 381 TGEFDF 386
GE ++
Sbjct: 583 VGEAEW 588
>gi|300676900|gb|ADK26772.1| general transcription factor IIA, 1-like [Zonotrichia albicollis]
Length = 1191
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 49/77 (63%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD + + D + T ++++ Q++K+ RTK++WK LKDG+M
Sbjct: 1120 QIDIVEED---PLNSGDD--VSEQDIADLFGTDNVIVCQYEKIHRTKNKWKFYLKDGVMS 1174
Query: 370 INNKDILFNKATGEFDF 386
I KD +F KATG+ ++
Sbjct: 1175 IEGKDHVFAKATGDAEW 1191
>gi|50291165|ref|XP_448015.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527326|emb|CAG60966.1| unnamed protein product [Candida glabrata]
Length = 249
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 322 LNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
L+++DD+ L + +GE+ ++++L +DKVTRTK+RWKC LKDGI +N KD F KA
Sbjct: 185 LDDSDDNYL--ISEGEDEGPDENIILCLYDKVTRTKARWKCTLKDGIATVNRKDYSFQKA 242
Query: 381 TGEFDF 386
E ++
Sbjct: 243 QVEAEW 248
>gi|1633309|pdb|1YTF|C Chain C, Yeast TfiiaTBPDNA COMPLEX
gi|38492532|pdb|1NH2|C Chain C, Crystal Structure Of A Yeast TfiiaTBPDNA COMPLEX
Length = 79
Score = 61.2 bits (147), Expect = 9e-07, Method: Composition-based stats.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 3/72 (4%)
Query: 316 DDDDEPLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
D+ L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D
Sbjct: 9 DEVGSELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRND 66
Query: 375 ILFNKATGEFDF 386
F KA E ++
Sbjct: 67 YTFQKAQVEAEW 78
>gi|410901529|ref|XP_003964248.1| PREDICTED: stonin-1-like [Takifugu rubripes]
Length = 1037
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 311 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
++ A +D++PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M
Sbjct: 964 DELASVEDEDPLNSGDD--VIEQDIPDLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVMCH 1021
Query: 371 NNKDILFNKATGEFDF 386
+D +F+KA GE ++
Sbjct: 1022 RGRDYVFSKAVGEAEW 1037
>gi|119186417|ref|XP_001243815.1| hypothetical protein CIMG_03256 [Coccidioides immitis RS]
gi|392870531|gb|EAS32339.2| hypothetical protein CIMG_03256 [Coccidioides immitis RS]
Length = 389
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R KS+WKC LKDGI+ K+ +F+K TGEF++
Sbjct: 345 QVMLCTYDKVQRVKSKWKCTLKDGILTTGGKEYVFHKGTGEFEW 388
>gi|303317782|ref|XP_003068893.1| Transcription factor IIA, alpha/beta subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240108574|gb|EER26748.1| Transcription factor IIA, alpha/beta subunit family protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 389
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R KS+WKC LKDGI+ K+ +F+K TGEF++
Sbjct: 345 QVMLCTYDKVQRVKSKWKCTLKDGILTTGGKEYVFHKGTGEFEW 388
>gi|67517071|ref|XP_658420.1| hypothetical protein AN0816.2 [Aspergillus nidulans FGSC A4]
gi|40746490|gb|EAA65646.1| hypothetical protein AN0816.2 [Aspergillus nidulans FGSC A4]
gi|259488901|tpe|CBF88727.1| TPA: transcription factor TFIIA complex subunit Toa1, putative
(AFU_orthologue; AFUA_1G14740) [Aspergillus nidulans
FGSC A4]
Length = 419
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 8/70 (11%)
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
DD + L DD++ D V Q ++L +DKV R K++WKC LKDGI+ K+ +
Sbjct: 358 DDPDDLVAQDDEDDDAVGQ--------VMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYV 409
Query: 377 FNKATGEFDF 386
F+K GEF++
Sbjct: 410 FHKGQGEFEW 419
>gi|388580000|gb|EIM20318.1| TFIIA-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 175
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 34/43 (79%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+VL +DKV R K++W+ LKDGI+ INNKD LF+K +GEF++
Sbjct: 133 IVLCLYDKVQRVKNKWRMQLKDGIISINNKDYLFSKCSGEFEW 175
>gi|363755108|ref|XP_003647769.1| hypothetical protein Ecym_7100 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891805|gb|AET40952.1| hypothetical protein Ecym_7100 [Eremothecium cymbalariae
DBVPG#7215]
Length = 238
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 301 QASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWK 360
QA A++ ++ D DD DDE + + E N +++L ++KV R K++WK
Sbjct: 159 QAKKSALLETDEINSDLDDT------DDEYVNFGEEENGNDVNIMLCLYEKVLRVKNKWK 212
Query: 361 CALKDGIMHINNKDILFNKATGEFDF 386
C LKDGI INNKD F KA GE ++
Sbjct: 213 CNLKDGIATINNKDYAFQKAQGESEW 238
>gi|341886698|gb|EGT42633.1| CBN-PQN-51 protein [Caenorhabditis brenneri]
Length = 353
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++V+ QF+KV R +++WK LKDGIMHI+ KD F K TGE ++
Sbjct: 310 NIVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 353
>gi|85116223|ref|XP_965018.1| hypothetical protein NCU02615 [Neurospora crassa OR74A]
gi|28926818|gb|EAA35782.1| predicted protein [Neurospora crassa OR74A]
gi|38567155|emb|CAE76449.1| related to transcription factor TFIIA-L [Neurospora crassa]
Length = 421
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 34/43 (79%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDG++ +N K+ +F+KA GE+++
Sbjct: 379 IMLCLYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKANGEYEW 421
>gi|336464804|gb|EGO53044.1| hypothetical protein NEUTE1DRAFT_91976 [Neurospora tetrasperma FGSC
2508]
Length = 408
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 34/43 (79%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDG++ +N K+ +F+KA GE+++
Sbjct: 366 IMLCLYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKANGEYEW 408
>gi|350296905|gb|EGZ77882.1| transcription factor IIA, alpha/beta subunit [Neurospora
tetrasperma FGSC 2509]
Length = 422
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 34/43 (79%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDG++ +N K+ +F+KA GE+++
Sbjct: 380 IMLCLYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKANGEYEW 422
>gi|17562510|ref|NP_504355.1| Protein PQN-51 [Caenorhabditis elegans]
gi|351057796|emb|CCD64397.1| Protein PQN-51 [Caenorhabditis elegans]
Length = 354
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+V+ QF+KV R +++WK LKDGIMHI+ KD F K TGE ++
Sbjct: 312 VVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 354
>gi|358059611|dbj|GAA94602.1| hypothetical protein E5Q_01254 [Mixia osmundae IAM 14324]
Length = 217
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
LV+A +DKV R K++WK LKDGIM IN KD LF++ GE ++
Sbjct: 175 LVIALYDKVQRVKNKWKIVLKDGIMSINGKDYLFSRCNGELEW 217
>gi|388856850|emb|CCF49637.1| related to TOA1-transcription factor TFIIA-L [Ustilago hordei]
Length = 214
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+VL +DKV R K++WKC LKDG+ I+ +D LF K GEF++
Sbjct: 172 MVLCLYDKVQRVKNKWKCVLKDGVASIDGRDYLFAKCNGEFEW 214
>gi|345561295|gb|EGX44391.1| hypothetical protein AOL_s00193g119 [Arthrobotrys oligospora ATCC
24927]
Length = 320
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 35/44 (79%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV RTK++WKC L++G++ +N K+ +F KATGE+++
Sbjct: 277 QIMLCMYDKVQRTKNKWKCWLRNGVLTVNGKEYVFGKATGEYEW 320
>gi|268556742|ref|XP_002636360.1| C. briggsae CBR-PQN-51 protein [Caenorhabditis briggsae]
Length = 353
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++V+ QF+KV R +++WK LKDGIMHI+ KD F K TGE ++
Sbjct: 310 NVVMCQFEKVNRARTKWKFQLKDGIMHIDKKDYCFQKCTGEAEW 353
>gi|453086494|gb|EMF14536.1| transcription factor IIA, alpha/beta subunit [Mycosphaerella
populorum SO2202]
Length = 423
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 32/42 (76%)
Query: 345 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+L +DKV R K++WKC LKDG+M ++ K+ +F+K GEF++
Sbjct: 382 ILCTYDKVQRVKNKWKCTLKDGVMSVSGKEWVFHKGMGEFEW 423
>gi|354474742|ref|XP_003499589.1| PREDICTED: TFIIA-alpha and beta-like factor isoform 2 [Cricetulus
griseus]
Length = 442
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M
Sbjct: 371 QIDTMEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNRWKFYLKDGVMC 425
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA GE ++
Sbjct: 426 FGGRDYVFAKAIGEAEW 442
>gi|336262854|ref|XP_003346209.1| hypothetical protein SMAC_05746 [Sordaria macrospora k-hell]
gi|380093538|emb|CCC08501.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 394
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 34/43 (79%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDG++ +N K+ +F+KA GE+++
Sbjct: 352 IMLCLYDKVQRVKNKWKCTLKDGVLTVNGKEYVFHKANGEYEW 394
>gi|443893851|dbj|GAC71307.1| RNA polymerase II transcription initiation factor TFIIA, large
chain [Pseudozyma antarctica T-34]
Length = 214
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+VL +DKV R K++WKC LKDG+ I+ +D LF K GEF++
Sbjct: 172 MVLCLYDKVQRVKNKWKCVLKDGVASIDGRDYLFAKCNGEFEW 214
>gi|71022199|ref|XP_761330.1| hypothetical protein UM05183.1 [Ustilago maydis 521]
gi|46097824|gb|EAK83057.1| hypothetical protein UM05183.1 [Ustilago maydis 521]
Length = 214
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+VL +DKV R K++WKC LKDG+ I+ +D LF K GEF++
Sbjct: 172 MVLCLYDKVQRVKNKWKCVLKDGVASIDGRDYLFAKCNGEFEW 214
>gi|354474740|ref|XP_003499588.1| PREDICTED: TFIIA-alpha and beta-like factor isoform 1 [Cricetulus
griseus]
Length = 476
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M
Sbjct: 405 QIDTMEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNRWKFYLKDGVMC 459
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA GE ++
Sbjct: 460 FGGRDYVFAKAIGEAEW 476
>gi|343428839|emb|CBQ72384.1| related to TOA1-transcription factor TFIIA-L [Sporisorium reilianum
SRZ2]
Length = 212
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+VL +DKV R K++WKC LKDG+ I+ +D LF K GEF++
Sbjct: 170 MVLCLYDKVQRVKNKWKCVLKDGVASIDGRDYLFAKCNGEFEW 212
>gi|254910985|ref|NP_076119.2| TFIIA-alpha and beta-like factor [Mus musculus]
gi|34098596|sp|Q8R4I4.2|TF2AY_MOUSE RecName: Full=TFIIA-alpha and beta-like factor; AltName:
Full=General transcription factor II A, 1-like factor
gi|12838693|dbj|BAB24296.1| unnamed protein product [Mus musculus]
gi|30047818|gb|AAH50756.1| General transcription factor IIA, 1-like [Mus musculus]
gi|148706704|gb|EDL38651.1| general transcription factor II A, 1-like factor [Mus musculus]
Length = 468
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T+++++ Q+DK+ R+K+RWK LKDG+M +D +F
Sbjct: 402 EEDPLNSGDD--VSEQDVPDLFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVF 459
Query: 378 NKATGEFDF 386
KA GE ++
Sbjct: 460 AKAIGEAEW 468
>gi|12313737|gb|AAG50432.1|AF250835_1 TFIIA-alpha/beta-like factor [Mus musculus]
Length = 468
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T+++++ Q+DK+ R+K+RWK LKDG+M +D +F
Sbjct: 402 EEDPLNSGDD--VSEQDVPDLFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVF 459
Query: 378 NKATGEFDF 386
KA GE ++
Sbjct: 460 AKAIGEAEW 468
>gi|348507302|ref|XP_003441195.1| PREDICTED: stonin-1-like [Oreochromis niloticus]
Length = 1115
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 311 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
++ A ++++PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M
Sbjct: 1042 DELANIEEEDPLNSGDD--VIEQDIPDLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVMCY 1099
Query: 371 NNKDILFNKATGEFDF 386
+D +F+KA GE ++
Sbjct: 1100 GGRDYVFSKAVGEAEW 1115
>gi|115492297|ref|XP_001210776.1| predicted protein [Aspergillus terreus NIH2624]
gi|114197636|gb|EAU39336.1| predicted protein [Aspergillus terreus NIH2624]
Length = 441
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
DD + L D D D V Q ++L +DKV R K++WKC LKDGI+ K+ +
Sbjct: 380 DDPDDLVAEDHDAEDAVGQ--------VMLCTYDKVARVKNKWKCTLKDGILTTGGKEYV 431
Query: 377 FNKATGEFDF 386
F+K GEF++
Sbjct: 432 FHKGQGEFEW 441
>gi|378730061|gb|EHY56520.1| transcription initiation factor TFIIA large subunit [Exophiala
dermatitidis NIH/UT8656]
Length = 382
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
NT ++L +DKV R K++WKC LKDGI ++ + +F+K GEF++
Sbjct: 336 NTDQVMLCTYDKVQRVKNKWKCTLKDGIFRVDGTEYVFHKGQGEFEW 382
>gi|361129224|gb|EHL01136.1| putative Transcription initiation factor IIA large subunit [Glarea
lozoyensis 74030]
Length = 429
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 14/79 (17%)
Query: 310 QNDAAEDDDDEPLNENDDDE------LDDVDQG------EELNTQHLVLAQFDKVTRTKS 357
Q+D A DDD L E D DE LDD D G +E + H++L +DKV R K+
Sbjct: 351 QHDGAGSDDD--LKEEDIDEDAINSDLDDPDDGLNEEDDDEDSNSHIMLCMYDKVQRVKN 408
Query: 358 RWKCALKDGIMHINNKDIL 376
+WKC +KDG++ +N K+ +
Sbjct: 409 KWKCVMKDGVLTVNGKETI 427
>gi|119494970|ref|XP_001264282.1| transcription factor TFIIA complex subunit Toa1, putative
[Neosartorya fischeri NRRL 181]
gi|119412444|gb|EAW22385.1| transcription factor TFIIA complex subunit Toa1, putative
[Neosartorya fischeri NRRL 181]
Length = 409
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 325 NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
+D D+L D E + ++L +DKV R K++WKC LKDGI+ K+ +F+K GEF
Sbjct: 348 DDPDDLVAEDHDAEDSVGQVMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEF 407
Query: 385 DF 386
++
Sbjct: 408 EW 409
>gi|47228952|emb|CAG09467.1| unnamed protein product [Tetraodon nigroviridis]
Length = 936
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
++++PLN DD + + D + +T ++++ Q+DK+ R+K+RWK LKDG+M +D +
Sbjct: 869 EEEDPLNSGDD--VIEQDIPDLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVMCYGGRDYV 926
Query: 377 FNKATGEFDF 386
F+KA GE ++
Sbjct: 927 FSKAVGEAEW 936
>gi|160331641|ref|XP_001712527.1| hypothetical protein HAN_3g392 [Hemiselmis andersenii]
gi|159765976|gb|ABW98202.1| hypothetical protein HAN_3g392 [Hemiselmis andersenii]
Length = 281
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 61/128 (47%), Gaps = 11/128 (8%)
Query: 268 PYDDVLSTP-NIYNYQ--------GVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDD 318
P + S+P NI+ Y+ + E+ + P N A + D +
Sbjct: 152 PLEKFFSSPINIFKYEKNWFNKYGSFLEENLDFFFDPKKNSTLAEKKNFQEEKDQNFSNL 211
Query: 319 DEPLNENDDDELDDVDQG--EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
+ L D+EL+ + G EE ++ +LA +KV R ++W+ LKDGI+H+N KD+L
Sbjct: 212 IDSLGSELDEELESNEIGGVEEKIPKNFILAITEKVYRRNTKWRITLKDGILHLNEKDLL 271
Query: 377 FNKATGEF 384
FN EF
Sbjct: 272 FNSCKCEF 279
>gi|392574378|gb|EIW67514.1| hypothetical protein TREMEDRAFT_64096 [Tremella mesenterica DSM
1558]
Length = 230
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+V +DKV R K++WK KDG++HIN +D LF + TGEF++
Sbjct: 188 IVFCVYDKVQRVKNKWKTVFKDGLVHINGRDYLFTRCTGEFEW 230
>gi|317025725|ref|XP_001389682.2| transcription factor IIA, alpha/beta subunit family protein
[Aspergillus niger CBS 513.88]
Length = 416
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
DD + L D D D V Q ++L +DKV R K++WKC LKDGI+ K+ +
Sbjct: 355 DDPDDLVAEDHDAEDAVGQ--------VMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYV 406
Query: 377 FNKATGEFDF 386
F+K GEF++
Sbjct: 407 FHKGQGEFEW 416
>gi|121701035|ref|XP_001268782.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus clavatus NRRL 1]
gi|119396925|gb|EAW07356.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus clavatus NRRL 1]
Length = 402
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%)
Query: 325 NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
+D D+L D E ++L +DKV R K++WKC LKDGI+ K+ +F+K GEF
Sbjct: 341 DDPDDLVAEDHDAEDAVGQVMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEF 400
Query: 385 DF 386
++
Sbjct: 401 EW 402
>gi|256085877|ref|XP_002579137.1| tfiia large subunit [Schistosoma mansoni]
gi|353228765|emb|CCD74936.1| putative tfiia large subunit [Schistosoma mansoni]
Length = 448
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D + + ++V+ Q+DK+ R +++W+ LKDGIM IN +D +F KA
Sbjct: 385 PLNSEDD--VSDEEPEVLFESDNVVVCQYDKIHRARNKWRFHLKDGIMSINGRDHIFQKA 442
Query: 381 TGEFDF 386
GE ++
Sbjct: 443 VGEAEW 448
>gi|256085875|ref|XP_002579136.1| tfiia large subunit [Schistosoma mansoni]
Length = 578
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D + + ++V+ Q+DK+ R +++W+ LKDGIM IN +D +F KA
Sbjct: 515 PLNSEDD--VSDEEPEVLFESDNVVVCQYDKIHRARNKWRFHLKDGIMSINGRDHIFQKA 572
Query: 381 TGEFDF 386
GE ++
Sbjct: 573 VGEAEW 578
>gi|353228766|emb|CCD74937.1| putative tfiia large subunit [Schistosoma mansoni]
Length = 578
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D + + ++V+ Q+DK+ R +++W+ LKDGIM IN +D +F KA
Sbjct: 515 PLNSEDD--VSDEEPEVLFESDNVVVCQYDKIHRARNKWRFHLKDGIMSINGRDHIFQKA 572
Query: 381 TGEFDF 386
GE ++
Sbjct: 573 VGEAEW 578
>gi|348574700|ref|XP_003473128.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 2 [Cavia
porcellus]
Length = 442
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 309 TQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIM 368
+Q D E+D PLN DD DV + +T ++++ Q+DK+ R K++WK LKDG+M
Sbjct: 370 SQADIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRNKNKWKFYLKDGVM 424
Query: 369 HINNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 425 CFGGRDYVFAKAIGDAEW 442
>gi|325651986|ref|NP_001191774.1| TFIIA-alpha and beta-like factor [Equus caballus]
Length = 473
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 49/78 (62%), Gaps = 5/78 (6%)
Query: 309 TQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIM 368
+Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDGIM
Sbjct: 401 SQIDVVEED---PLNSGDD--VSEQDMSDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGIM 455
Query: 369 HINNKDILFNKATGEFDF 386
+D +F +A G+ ++
Sbjct: 456 CFGGRDYVFARAIGDAEW 473
>gi|331229675|ref|XP_003327503.1| hypothetical protein PGTG_09037 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309306493|gb|EFP83084.1| hypothetical protein PGTG_09037 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 189
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
LV+A +DKV R K++WK LKDGI+ + KD LF+K GEF++
Sbjct: 147 LVIALYDKVQRVKNKWKITLKDGIVSVQGKDYLFHKCNGEFEW 189
>gi|403260710|ref|XP_003922802.1| PREDICTED: stonin-1 isoform 1 [Saimiri boliviensis boliviensis]
gi|403260712|ref|XP_003922803.1| PREDICTED: stonin-1 isoform 2 [Saimiri boliviensis boliviensis]
Length = 1182
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 286 NEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE----------PLNENDDDELDDVDQ 335
NE I++T ++ ++ ++ AA D+E PLN DD + + D
Sbjct: 1074 NELLGIIDTEDLKVLEEEADSISNEDSAANSSDNEDSQVDIVEEDPLNSGDD--VSEQDV 1131
Query: 336 GEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ +T ++++ Q+DK+ R+K++WK LKDG+M +D +F KA G+ ++
Sbjct: 1132 PDLFDTDNIIVCQYDKIHRSKNKWKFFLKDGVMCFGGRDYVFAKAIGDAEW 1182
>gi|226295290|gb|EEH50710.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 531
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R KS+WKC LKDGI+ K+ +F+K GEF++
Sbjct: 487 QVMLCTYDKVQRVKSKWKCTLKDGILTSGGKEYVFHKGNGEFEW 530
>gi|301753275|ref|XP_002912472.1| PREDICTED: stonin-1-like [Ailuropoda melanoleuca]
gi|281352647|gb|EFB28231.1| hypothetical protein PANDA_000224 [Ailuropoda melanoleuca]
Length = 1181
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1110 QRDVVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 1164
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 1165 FGGRDYVFAKAIGDAEW 1181
>gi|260941582|ref|XP_002614957.1| hypothetical protein CLUG_04972 [Clavispora lusitaniae ATCC 42720]
gi|238851380|gb|EEQ40844.1| hypothetical protein CLUG_04972 [Clavispora lusitaniae ATCC 42720]
Length = 260
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 7/71 (9%)
Query: 316 DDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 375
D DDE +E DDE D DQ ++L +DKV R K++WKC LK+GI +I +D
Sbjct: 197 DLDDELDSEKSDDE--DADQ-----EGQIMLCLYDKVQRVKNKWKCNLKEGIANIEGRDF 249
Query: 376 LFNKATGEFDF 386
+F +ATGE ++
Sbjct: 250 VFQRATGESEW 260
>gi|385301255|gb|EIF45458.1| tfiia large subunit [Dekkera bruxellensis AWRI1499]
Length = 329
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 317 DDDEPLNENDDDELDDVDQGEELNT--QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
D DE ++ DD E DD++ E+ + +++L +D+V R ++RWKC+LKDGI +I+ +D
Sbjct: 258 DSDEINSDLDDPESDDINSDEDNDNPEANIMLCLYDRVQRVRNRWKCSLKDGIANIDGQD 317
Query: 375 ILFNKATGEFDF 386
F KATG+ ++
Sbjct: 318 YAFQKATGDSEW 329
>gi|348574698|ref|XP_003473127.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 1 [Cavia
porcellus]
Length = 476
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 309 TQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIM 368
+Q D E+D PLN DD DV + +T ++++ Q+DK+ R K++WK LKDG+M
Sbjct: 404 SQADIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRNKNKWKFYLKDGVM 458
Query: 369 HINNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 459 CFGGRDYVFAKAIGDAEW 476
>gi|325651976|ref|NP_001191770.1| TFIIA-alpha and beta-like factor [Callithrix jacchus]
Length = 478
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 18/141 (12%)
Query: 257 KIPQLDGPIPDPYDDVLSTPNIYNYQGV-VNEDYNIVNTPAPNDIQASTPAVVTQNDAAE 315
+I Q+DG D S I N + V NE I++T ++ ++ ++ AA
Sbjct: 345 EIIQVDG-----IGDTSSNEEIGNARDVDENEFLGIIDTGDLKVLEEEADSISNEDSAAT 399
Query: 316 DDDDE----------PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKD 365
D+E PLN DD DV + +T ++++ Q+DK+ R+K++WK LKD
Sbjct: 400 SSDNEDPQVDIVEEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKD 457
Query: 366 GIMHINNKDILFNKATGEFDF 386
G+M +D +F+KA G+ ++
Sbjct: 458 GVMCFGGRDYVFSKAIGDAEW 478
>gi|260830589|ref|XP_002610243.1| hypothetical protein BRAFLDRAFT_126818 [Branchiostoma floridae]
gi|229295607|gb|EEN66253.1| hypothetical protein BRAFLDRAFT_126818 [Branchiostoma floridae]
Length = 311
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%), Gaps = 14/79 (17%)
Query: 314 AEDDDDEPLNENDDDE------LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGI 367
AE +++EPLN DD L D+D ++V+ Q++++ R+K++WK LKDGI
Sbjct: 241 AEGEEEEPLNSEDDVSDDDPTDLFDID--------NVVVCQYERINRSKNKWKFHLKDGI 292
Query: 368 MHINNKDILFNKATGEFDF 386
M++ KD +F KATG+ ++
Sbjct: 293 MNLGGKDYVFQKATGDAEW 311
>gi|395508072|ref|XP_003758339.1| PREDICTED: TFIIA-alpha and beta-like factor [Sarcophilus harrisii]
Length = 487
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 416 QIDIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 470
Query: 370 INNKDILFNKATGEFDF 386
KD +F KA G+ ++
Sbjct: 471 FGGKDYVFAKAIGDAEW 487
>gi|432906525|ref|XP_004077573.1| PREDICTED: stonin-1-like [Oryzias latipes]
Length = 1077
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 311 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
++ A+ ++ +PLN DD D+ + +T ++++ Q+DK+ R+K+RWK LKDG++
Sbjct: 1004 DELADVEEGDPLNSGDDVVEQDIP--DLFDTDNVIVCQYDKIHRSKNRWKFHLKDGVICY 1061
Query: 371 NNKDILFNKATGEFDF 386
+D +F+KA GE ++
Sbjct: 1062 GGRDYVFSKAVGEAEW 1077
>gi|449277475|gb|EMC85630.1| Stonin-1 [Columba livia]
Length = 1215
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD++ + D + +T +++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1144 QVDIVEED---PLN--SDDDVSEQDIPDLFDTDNVIFCQYDKIHRSKNKWKFYLKDGVMS 1198
Query: 370 INNKDILFNKATGEFDF 386
KD +F KA G+ ++
Sbjct: 1199 FEGKDHVFAKAVGDAEW 1215
>gi|325652002|ref|NP_001191779.1| TFIIA-alpha and beta-like factor [Monodelphis domestica]
Length = 487
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 416 QIDIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 470
Query: 370 INNKDILFNKATGEFDF 386
KD +F KA G+ ++
Sbjct: 471 FGGKDYVFAKAIGDAEW 487
>gi|452844491|gb|EME46425.1| hypothetical protein DOTSEDRAFT_110198, partial [Dothistroma
septosporum NZE10]
Length = 72
Score = 57.8 bits (138), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 345 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+L +DKV R K++WKC LKDG+M +N K+ +F+K GEF++
Sbjct: 31 ILCTYDKVQRVKNKWKCTLKDGVMSVNGKEWVFHKGMGEFEW 72
>gi|242778223|ref|XP_002479195.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722814|gb|EED22232.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces stipitatus ATCC 10500]
Length = 374
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDGI+ K+ +F+K GEF++
Sbjct: 332 VMLCTYDKVQRVKNKWKCTLKDGILSTGGKEYVFHKGQGEFEW 374
>gi|295664316|ref|XP_002792710.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226278824|gb|EEH34390.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 579
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 31/44 (70%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R KS+WKC LKDGI+ K+ +F+K GEF++
Sbjct: 535 QVMLCTYDKVQRVKSKWKCTLKDGILTSGGKEYVFHKGNGEFEW 578
>gi|302309478|ref|NP_986894.2| AGR228Cp [Ashbya gossypii ATCC 10895]
gi|299788378|gb|AAS54718.2| AGR228Cp [Ashbya gossypii ATCC 10895]
gi|374110144|gb|AEY99049.1| FAGR228Cp [Ashbya gossypii FDAG1]
Length = 200
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 10/88 (11%)
Query: 301 QASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQ--HLVLAQFDKVTRTKSR 358
QA A++ ++ D DD DDE V+ GEE N +++L ++KV R K++
Sbjct: 121 QAKKSALLETDEINSDLDD------TDDEY--VNFGEEENGSDVNIMLCLYEKVLRVKNK 172
Query: 359 WKCALKDGIMHINNKDILFNKATGEFDF 386
WKC LKDG+ INNKD F K+ GE ++
Sbjct: 173 WKCNLKDGVATINNKDYAFQKSQGESEW 200
>gi|340713524|ref|XP_003395292.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 1 [Bombus terrestris]
gi|340713526|ref|XP_003395293.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 2 [Bombus terrestris]
gi|350409465|ref|XP_003488747.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 1 [Bombus impatiens]
Length = 382
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 314 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 373
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM++N K
Sbjct: 312 AAAREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLNGK 369
Query: 374 DILFNKATGEFDF 386
D +F K G+ ++
Sbjct: 370 DYVFQKMNGDAEW 382
>gi|313225923|emb|CBY21066.1| unnamed protein product [Oikopleura dioica]
Length = 326
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 316 DDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 375
+D EPLN +DD D + E T+++++ QF+K+ R ++RW+ L +GIM +N KD
Sbjct: 258 QEDAEPLNSDDDV--SDSNDNEIFETENILICQFEKIARVRNRWRFQLVNGIMTLNGKDY 315
Query: 376 LFNKATGEFDF 386
+F KATGE ++
Sbjct: 316 VFQKATGEGEW 326
>gi|238487178|ref|XP_002374827.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus flavus NRRL3357]
gi|220699706|gb|EED56045.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus flavus NRRL3357]
gi|391867341|gb|EIT76587.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus oryzae 3.042]
Length = 411
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDGI+ K+ +F+K GEF++
Sbjct: 368 QVMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEFEW 411
>gi|169770413|ref|XP_001819676.1| transcription factor IIA, alpha/beta subunit family protein
[Aspergillus oryzae RIB40]
gi|83767535|dbj|BAE57674.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 411
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDGI+ K+ +F+K GEF++
Sbjct: 368 QVMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEFEW 411
>gi|255713680|ref|XP_002553122.1| KLTH0D09482p [Lachancea thermotolerans]
gi|238934502|emb|CAR22684.1| KLTH0D09482p [Lachancea thermotolerans CBS 6340]
Length = 224
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 9/76 (11%)
Query: 311 NDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
N +D +D+ LN + +DE D +++VL ++KV R K++WKC LKDG+ I
Sbjct: 158 NSDLDDSEDDYLNSSGEDEGQD---------ENIVLCLYEKVLRVKNKWKCNLKDGLATI 208
Query: 371 NNKDILFNKATGEFDF 386
N+KD F +A GE ++
Sbjct: 209 NHKDYAFQRAQGETEW 224
>gi|212533489|ref|XP_002146901.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces marneffei ATCC 18224]
gi|210072265|gb|EEA26354.1| transcription factor TFIIA complex subunit Toa1, putative
[Talaromyces marneffei ATCC 18224]
Length = 366
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 9/71 (12%)
Query: 316 DDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDI 375
DD D+ +NE D E D+ ++L +DKV R K++WKC LKDGI+ K+
Sbjct: 305 DDPDDLVNE--DPEGDEA-------VGEVMLCTYDKVQRVKNKWKCTLKDGILSTGGKEY 355
Query: 376 LFNKATGEFDF 386
+F+K GEF++
Sbjct: 356 VFHKGQGEFEW 366
>gi|328858362|gb|EGG07475.1| hypothetical protein MELLADRAFT_85732 [Melampsora larici-populina
98AG31]
Length = 187
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
LV+A +DKV R K++WK LKDGI+ + KD +F+K GEF++
Sbjct: 145 LVIALYDKVQRVKNKWKITLKDGIVSVQGKDYVFHKCNGEFEW 187
>gi|340713528|ref|XP_003395294.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 3 [Bombus terrestris]
gi|350409467|ref|XP_003488748.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 2 [Bombus impatiens]
Length = 360
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 314 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 373
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM++N K
Sbjct: 290 AAAREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLNGK 347
Query: 374 DILFNKATGEFDF 386
D +F K G+ ++
Sbjct: 348 DYVFQKMNGDAEW 360
>gi|425770639|gb|EKV09107.1| Transcription factor TFIIA complex subunit Toa1, putative
[Penicillium digitatum Pd1]
gi|425771945|gb|EKV10373.1| Transcription factor TFIIA complex subunit Toa1, putative
[Penicillium digitatum PHI26]
Length = 371
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDGI+ K+ +F+K GEF++
Sbjct: 329 VMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEFEW 371
>gi|163915442|gb|AAI57264.1| general transcription factor IIA, 1-like [Xenopus (Silurana)
tropicalis]
Length = 472
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 8/72 (11%)
Query: 318 DDEPLNENDD---DELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
+++PLN DD E+ D+ +T ++++ Q+DK+ R+K++WK LKDG+M KD
Sbjct: 406 EEDPLNSGDDVSEQEVPDL-----FDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKD 460
Query: 375 ILFNKATGEFDF 386
+F+KA GE ++
Sbjct: 461 YVFSKAIGEAEW 472
>gi|358370104|dbj|GAA86716.1| transcription factor TFIIA complex subunit Toa1 [Aspergillus
kawachii IFO 4308]
Length = 419
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 321 PLNENDDDELDDV--DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFN 378
+N + DD D V D E ++L +DKV R K++WKC LKDGI+ K+ +F+
Sbjct: 352 AINSDLDDPDDLVAEDHDAEDAVGQVMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFH 411
Query: 379 KATGEFDF 386
K GEF++
Sbjct: 412 KGQGEFEW 419
>gi|242018053|ref|XP_002429497.1| transcription initiation factor IIA alpha chain TFIIA p30, putative
[Pediculus humanus corporis]
gi|212514435|gb|EEB16759.1| transcription initiation factor IIA alpha chain TFIIA p30, putative
[Pediculus humanus corporis]
Length = 359
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 38/48 (79%)
Query: 339 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+T ++V+ QFDK+TR++++WK LKDGIM+++ KD +F ++ G+ ++
Sbjct: 312 FDTDNVVVCQFDKITRSRNKWKFYLKDGIMNLSGKDFVFQRSNGDAEW 359
>gi|255941820|ref|XP_002561679.1| Pc16g13800 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586302|emb|CAP94050.1| Pc16g13800 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 324
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC LKDGI+ K+ +F+K GEF++
Sbjct: 282 VMLCTYDKVQRVKNKWKCTLKDGILTTGGKEYVFHKGQGEFEW 324
>gi|33312516|gb|AAQ04071.1|AF424776_1 TFIIAa/b-like factor [Xenopus laevis]
gi|34099894|gb|AAP44968.1| transcription factor ALF [Xenopus laevis]
Length = 472
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + + + +T ++++ Q+DK+ R+K++WK LKDG+M KD +F
Sbjct: 406 EEDPLNSGDD--VSEQEVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVF 463
Query: 378 NKATGEFDF 386
+KA GE ++
Sbjct: 464 SKAIGEAEW 472
>gi|113931524|ref|NP_001039213.1| TFIIA-alpha and beta-like factor [Xenopus (Silurana) tropicalis]
gi|89268881|emb|CAJ83735.1| TFIIA-alpha/beta-like factor [Xenopus (Silurana) tropicalis]
Length = 472
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%), Gaps = 8/72 (11%)
Query: 318 DDEPLNENDD---DELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
+++PLN DD E+ D+ +T ++++ Q+DK+ R+K++WK LKDG+M KD
Sbjct: 406 EEDPLNSGDDVSEQEVPDL-----FDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKD 460
Query: 375 ILFNKATGEFDF 386
+F+KA GE ++
Sbjct: 461 YVFSKAIGEAEW 472
>gi|351695612|gb|EHA98530.1| Stonin-1 [Heterocephalus glaber]
Length = 1174
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 309 TQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIM 368
+Q D E+D PLN DD DV + +T ++++ Q+DK+ R K++WK LKDGIM
Sbjct: 1102 SQLDIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRNKNKWKFYLKDGIM 1156
Query: 369 HINNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 1157 CFGGRDYVFAKAIGDAEW 1174
>gi|332022952|gb|EGI63218.1| Transcription initiation factor IIA subunit 1 [Acromyrmex
echinatior]
Length = 373
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 38/48 (79%)
Query: 339 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+T ++V+ Q+DK+TR++++WK LKDGIM+++ KD +F KA G+ ++
Sbjct: 326 FDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGKDYVFQKANGDAEW 373
>gi|148222810|ref|NP_001082755.1| TFIIA-alpha and beta-like factor [Xenopus laevis]
gi|49118685|gb|AAH73725.1| ALF protein [Xenopus laevis]
Length = 472
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + + + +T ++++ Q+DK+ R+K++WK LKDG+M KD +F
Sbjct: 406 EEDPLNSGDD--VSEQEVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMSFGGKDYVF 463
Query: 378 NKATGEFDF 386
+KA GE ++
Sbjct: 464 SKAIGEAEW 472
>gi|327262767|ref|XP_003216195.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Anolis
carolinensis]
Length = 152
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 339 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+T ++++ Q+DKV R+K+RWK LKDG+M KD +F+KA G+ ++
Sbjct: 105 FDTDNIIVCQYDKVQRSKNRWKFYLKDGVMCFEGKDYVFSKAVGDAEW 152
>gi|307179337|gb|EFN67701.1| Transcription initiation factor IIA subunit 1 [Camponotus
floridanus]
Length = 373
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 38/48 (79%)
Query: 339 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+T ++V+ Q+DK+TR++++WK LKDGIM+++ KD +F KA G+ ++
Sbjct: 326 FDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGKDYVFQKANGDAEW 373
>gi|332226473|ref|XP_003262414.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Nomascus
leucogenys]
Length = 444
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 373 QVDIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 427
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 428 FGGRDYVFAKAIGDAEW 444
>gi|332226467|ref|XP_003262411.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Nomascus
leucogenys]
Length = 478
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 407 QVDIVEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 461
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 462 FGGRDYVFAKAIGDAEW 478
>gi|339235659|ref|XP_003379384.1| transcription initiation factor IIA subunit 1 [Trichinella
spiralis]
gi|316977961|gb|EFV60997.1| transcription initiation factor IIA subunit 1 [Trichinella
spiralis]
Length = 431
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
+D EPLN +DD + D E + ++ Q++KVTRT+++WK KDGIM+IN KD++
Sbjct: 229 EDGEPLNSDDDISVGD--PCEIFESDNVTACQYEKVTRTRNKWKFIFKDGIMNINGKDLV 286
>gi|291386812|ref|XP_002709923.1| PREDICTED: hCG16775-like [Oryctolagus cuniculus]
Length = 1176
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1110 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1167
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1168 AKAIGDAEW 1176
>gi|332226469|ref|XP_003262412.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Nomascus
leucogenys]
gi|441641692|ref|XP_004090392.1| PREDICTED: TFIIA-alpha and beta-like factor-like [Nomascus
leucogenys]
Length = 1182
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1111 QVDIVEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 1165
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 1166 FGGRDYVFAKAIGDAEW 1182
>gi|325651994|ref|NP_001191776.1| TFIIA-alpha and beta-like factor [Oryctolagus cuniculus]
Length = 475
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 409 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 466
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 467 AKAIGDAEW 475
>gi|297265978|ref|XP_002808082.1| PREDICTED: LOW QUALITY PROTEIN: stonin-1-like [Macaca mulatta]
Length = 1182
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1111 QVDIVEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 1165
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 1166 FGGRDYVFAKAIGDAEW 1182
>gi|355565684|gb|EHH22113.1| hypothetical protein EGK_05316 [Macaca mulatta]
Length = 1182
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1111 QVDIVEED---PLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 1165
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 1166 FGGRDYVFAKAIGDAEW 1182
>gi|67969611|dbj|BAE01154.1| unnamed protein product [Macaca fascicularis]
gi|67969631|dbj|BAE01164.1| unnamed protein product [Macaca fascicularis]
gi|67971998|dbj|BAE02341.1| unnamed protein product [Macaca fascicularis]
Length = 478
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 407 QVDIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 461
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 462 FGGRDYVFAKAIGDAEW 478
>gi|307213766|gb|EFN89104.1| Transcription initiation factor IIA subunit 1 [Harpegnathos
saltator]
Length = 367
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 38/48 (79%)
Query: 339 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+T ++V+ Q+DK+TR++++WK LKDGIM+++ KD +F KA G+ ++
Sbjct: 320 FDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGKDYVFQKANGDAEW 367
>gi|402890863|ref|XP_003908691.1| PREDICTED: stonin-1 [Papio anubis]
gi|402890865|ref|XP_003908692.1| PREDICTED: stonin-1 [Papio anubis]
Length = 1182
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 1111 QVDIVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 1165
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 1166 FGGRDYVFAKAIGDAEW 1182
>gi|395829640|ref|XP_003787956.1| PREDICTED: stonin-1 isoform 1 [Otolemur garnettii]
Length = 1179
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 286 NEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE----------PLNENDDDELDDVDQ 335
NE I++T ++ +V ++ A D+E PLN DD DV
Sbjct: 1071 NEFLGIIDTGDLKVLEEEADSVSNEDSPANSSDNEDPKVARVEEDPLNSGDDVSEQDVP- 1129
Query: 336 GEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ +T ++++ Q+DK+ R+K++WK LKDG+M +D +F KA G+ ++
Sbjct: 1130 -DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFAKAIGDAEW 1179
>gi|325651980|ref|NP_001191772.1| TFIIA-alpha and beta-like factor [Canis lupus familiaris]
Length = 476
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 405 QIDIVEED---PLNSGDDVSEQDV--PDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 459
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 460 FGGRDYVFAKAIGDAEW 476
>gi|426335518|ref|XP_004029267.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 4 [Gorilla
gorilla gorilla]
Length = 444
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 378 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 435
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 436 AKAIGDAEW 444
>gi|301601620|ref|NP_001180416.1| TFIIA-alpha and beta-like factor isoform 2 [Homo sapiens]
gi|194378822|dbj|BAG63576.1| unnamed protein product [Homo sapiens]
Length = 444
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 378 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 435
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 436 AKAIGDAEW 444
>gi|444706516|gb|ELW47853.1| TFIIA-alpha and beta-like factor [Tupaia chinensis]
Length = 416
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DV + +T ++++ Q+DKV R+K++WK LKDG+M +D +F
Sbjct: 350 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKVHRSKNKWKFYLKDGVMCFGGRDYVF 407
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 408 AKAIGDAEW 416
>gi|121483876|gb|ABM54237.1| SALF [Pan paniscus]
Length = 437
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 371 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 428
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 429 AKAIGDAEW 437
>gi|431912697|gb|ELK14715.1| TFIIA-alpha and beta-like factor [Pteropus alecto]
Length = 808
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 5/77 (6%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D E+D PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M
Sbjct: 737 QIDIVEED---PLNSGDD--VSEQDAPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMC 791
Query: 370 INNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 792 FGGRDYVFAKAIGDAEW 808
>gi|40555809|gb|AAH64585.1| GTF2A1L protein [Homo sapiens]
Length = 477
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 411 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 468
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 469 AKAIGDAEW 477
>gi|397504297|ref|XP_003822737.1| PREDICTED: stonin-1 [Pan paniscus]
Length = 1182
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1116 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1173
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1174 AKAIGDAEW 1182
>gi|5091688|gb|AAD39634.1|AF106857_1 TFIIA large subunit isoform ALF [Homo sapiens]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
>gi|62898261|dbj|BAD97070.1| TFIIA-alpha/beta-like factor isoform 1 variant [Homo sapiens]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
>gi|395829642|ref|XP_003787957.1| PREDICTED: stonin-1 isoform 2 [Otolemur garnettii]
Length = 1132
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 12/111 (10%)
Query: 286 NEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDE----------PLNENDDDELDDVDQ 335
NE I++T ++ +V ++ A D+E PLN DD DV
Sbjct: 1024 NEFLGIIDTGDLKVLEEEADSVSNEDSPANSSDNEDPKVARVEEDPLNSGDDVSEQDVP- 1082
Query: 336 GEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ +T ++++ Q+DK+ R+K++WK LKDG+M +D +F KA G+ ++
Sbjct: 1083 -DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVFAKAIGDAEW 1132
>gi|343962023|dbj|BAK62599.1| stonin-1 [Pan troglodytes]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
>gi|26787968|ref|NP_006863.2| TFIIA-alpha and beta-like factor isoform 1 [Homo sapiens]
gi|327478545|sp|Q9UNN4.2|TF2AY_HUMAN RecName: Full=TFIIA-alpha and beta-like factor; AltName:
Full=General transcription factor II A, 1-like factor
gi|19684124|gb|AAH25991.1| General transcription factor IIA, 1-like [Homo sapiens]
gi|119620599|gb|EAX00194.1| hCG2045898, isoform CRA_b [Homo sapiens]
gi|123981326|gb|ABM82492.1| TFIIA-alpha/beta-like factor [synthetic construct]
gi|123996161|gb|ABM85682.1| TFIIA-alpha/beta-like factor [synthetic construct]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
>gi|119620600|gb|EAX00195.1| hCG16775 [Homo sapiens]
Length = 1182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1116 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1173
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1174 AKAIGDAEW 1182
>gi|5091669|gb|AAD39617.1|AF026169_1 SALF [Homo sapiens]
Length = 1182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1116 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1173
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1174 AKAIGDAEW 1182
>gi|29553944|ref|NP_758515.1| STON1-GTF2A1L protein isoform 1 [Homo sapiens]
gi|62822516|gb|AAY15064.1| unknown [Homo sapiens]
Length = 1182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1116 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1173
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1174 AKAIGDAEW 1182
>gi|330040435|ref|XP_003239911.1| hypothetical protein CPARA_3gp355 [Cryptomonas paramecium]
gi|327206837|gb|AEA39013.1| hypothetical protein CPARA_3gp355 [Cryptomonas paramecium]
Length = 275
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 5/66 (7%)
Query: 324 ENDDDELDDVD-----QGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFN 378
E+ D E ++++ + +E N+ + +L+ +K+ R +RWK LKDGI+H+NN+D+LF+
Sbjct: 208 ESTDSEYNNINNQPTNKHKEDNSINFILSIVNKIYRRNARWKVILKDGILHVNNRDLLFS 267
Query: 379 KATGEF 384
EF
Sbjct: 268 SCKCEF 273
>gi|325651934|ref|NP_001191755.1| TFIIA-alpha and beta-like factor [Pan troglodytes]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
>gi|426335514|ref|XP_004029265.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 2 [Gorilla
gorilla gorilla]
Length = 1186
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1120 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1177
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1178 AKAIGDAEW 1186
>gi|426335512|ref|XP_004029264.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 1 [Gorilla
gorilla gorilla]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
>gi|75516982|gb|AAI01773.1| STON1-GTF2A1L readthrough transcript [Homo sapiens]
gi|75517271|gb|AAI01775.1| STON1-GTF2A1L readthrough transcript [Homo sapiens]
Length = 1182
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1116 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1173
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1174 AKAIGDAEW 1182
>gi|325651941|ref|NP_001191758.1| TFIIA-alpha and beta-like factor [Pongo abelii]
Length = 478
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DV + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDDVSEQDVP--DLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
>gi|76157743|gb|AAX28576.2| SJCHGC06110 protein [Schistosoma japonicum]
Length = 185
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D + + ++V+ Q+DK+ R +++W+ LKDGIM IN +D +F KA
Sbjct: 122 PLNSEDD--VSDEEPEVLFESDNVVVCQYDKIHRARNKWRFHLKDGIMSINGRDHVFQKA 179
Query: 381 TGEFDF 386
GE ++
Sbjct: 180 VGEAEW 185
>gi|320582199|gb|EFW96417.1| TFIIA large subunit [Ogataea parapolymorpha DL-1]
Length = 234
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+++L +D+V R K++WKC LKDGI +I+ +D F KATGE ++
Sbjct: 191 NIMLCLYDRVQRVKNKWKCNLKDGIANIDGRDYAFQKATGESEW 234
>gi|310703594|ref|NP_001185523.1| STON1-GTF2A1L protein isoform 3 [Homo sapiens]
Length = 1135
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1069 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1126
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1127 AKAIGDAEW 1135
>gi|302664214|ref|XP_003023741.1| transcription factor TFIIA complex subunit Toa1, putative
[Trichophyton verrucosum HKI 0517]
gi|291187751|gb|EFE43123.1| transcription factor TFIIA complex subunit Toa1, putative
[Trichophyton verrucosum HKI 0517]
Length = 411
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 318 DDEPLNENDDDELDDV-----------DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 366
DD P+ ++DD++ + +QGE+ ++L +DKV R KS+WKC LKDG
Sbjct: 313 DDYPVKKDDDEDAINSDLDDPDDLLDEEQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDG 372
Query: 367 IMHINNKDILFNKATGEFDF 386
I+ + K+ +F +T +F F
Sbjct: 373 ILTSDGKECVFPSSTIQFIF 392
>gi|219520014|gb|AAI43521.1| STON1-GTF2A1L protein [Homo sapiens]
Length = 1135
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1069 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1126
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1127 AKAIGDAEW 1135
>gi|426335516|ref|XP_004029266.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 3 [Gorilla
gorilla gorilla]
Length = 1139
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 1073 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 1130
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1131 AKAIGDAEW 1139
>gi|344305167|gb|EGW35399.1| hypothetical protein SPAPADRAFT_58617 [Spathaspora passalidarum
NRRL Y-27907]
Length = 276
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 320 EPLNENDDDELDDVDQGEELNTQ--HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+ +N + DDE D EE Q ++L +DKV R K++WK LK+GI +I+ KD +F
Sbjct: 208 DDINSDLDDEFDSERSDEEDGDQEGQIMLCLYDKVQRIKNKWKSNLKEGIANIDGKDYVF 267
Query: 378 NKATGEFDF 386
+KATGE ++
Sbjct: 268 HKATGESEW 276
>gi|50310187|ref|XP_455113.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644249|emb|CAG97820.1| KLLA0F00748p [Kluyveromyces lactis]
Length = 229
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 3/57 (5%)
Query: 330 LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+D D+G ++N ++L +DKV R K++WKC LK+G++ I++KD F KA GE ++
Sbjct: 176 MDVEDEGTDVN---MMLCLYDKVLRVKNKWKCNLKEGVVTIDHKDFAFQKAQGESEW 229
>gi|380011560|ref|XP_003689869.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 1 [Apis florea]
Length = 385
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 314 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 373
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM+++ K
Sbjct: 315 ATTREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGK 372
Query: 374 DILFNKATGEFDF 386
D +F K G+ ++
Sbjct: 373 DYVFQKMNGDAEW 385
>gi|398412714|ref|XP_003857675.1| hypothetical protein MYCGRDRAFT_29663, partial [Zymoseptoria
tritici IPO323]
gi|339477560|gb|EGP92651.1| hypothetical protein MYCGRDRAFT_29663 [Zymoseptoria tritici IPO323]
Length = 72
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 345 VLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+L +DKV R K++WKC LKDG+M + K+ +F+K GEF++
Sbjct: 31 ILCTYDKVQRVKNKWKCTLKDGVMSVGGKEWVFHKGMGEFEW 72
>gi|320164633|gb|EFW41532.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 339
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 323 NENDDDEL----DDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFN 378
E DDEL D+ + EE ++++L +KVTR ++RWK L+ GI+ I +D +F
Sbjct: 272 QEYKDDELLSDSDEEEAPEETGEKNMMLCTAEKVTRNRNRWKTTLRGGIVTIRGRDYVFR 331
Query: 379 KATGEFDF 386
ATGEF F
Sbjct: 332 TATGEFTF 339
>gi|328793106|ref|XP_003251828.1| PREDICTED: transcription initiation factor IIA subunit 1 isoform 1
[Apis mellifera]
Length = 384
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 314 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 373
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM+++ K
Sbjct: 314 ATAREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGK 371
Query: 374 DILFNKATGEFDF 386
D +F K G+ ++
Sbjct: 372 DYVFQKMNGDAEW 384
>gi|380011562|ref|XP_003689870.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 2 [Apis florea]
Length = 359
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 314 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 373
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM+++ K
Sbjct: 289 ATTREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGK 346
Query: 374 DILFNKATGEFDF 386
D +F K G+ ++
Sbjct: 347 DYVFQKMNGDAEW 359
>gi|307103811|gb|EFN52068.1| hypothetical protein CHLNCDRAFT_27230 [Chlorella variabilis]
Length = 80
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 314 AEDDDDEPLNENDDDELDDVDQGEELNTQHL---VLAQFDKVTRTKSRWKCALKDGIMHI 370
A D PL N + + G+E++ L VL QF+KV R+KS+WK LKD I+ +
Sbjct: 5 AHDLQPSPLRHNPEPPQNVYLTGDEVDEASLANVVLGQFEKVQRSKSKWKVVLKDCILTL 64
Query: 371 NNKDILFNKATGEFDF 386
N +D L + TGE DF
Sbjct: 65 NGRDYLVRRCTGEMDF 80
>gi|383849463|ref|XP_003700364.1| PREDICTED: transcription initiation factor IIA subunit 1-like
[Megachile rotundata]
Length = 360
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 37/48 (77%)
Query: 339 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+T ++V+ Q+DK+TR++++WK LKDGIM+++ KD +F K G+ ++
Sbjct: 313 FDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGKDYVFQKMNGDAEW 360
>gi|302499850|ref|XP_003011920.1| transcription factor TFIIA complex subunit Toa1, putative
[Arthroderma benhamiae CBS 112371]
gi|291175474|gb|EFE31280.1| transcription factor TFIIA complex subunit Toa1, putative
[Arthroderma benhamiae CBS 112371]
Length = 472
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 11/80 (13%)
Query: 318 DDEPLNENDDDELDDV-----------DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDG 366
DD P+ ++DD++ + +QGE+ ++L +DKV R KS+WKC LKDG
Sbjct: 374 DDYPVKKDDDEDAINSDLDDPDDLLDEEQGEDDAVGQVMLCTYDKVQRVKSKWKCVLKDG 433
Query: 367 IMHINNKDILFNKATGEFDF 386
I+ + K+ +F +T +F F
Sbjct: 434 ILTSDGKECVFPSSTIQFIF 453
>gi|328793108|ref|XP_395730.3| PREDICTED: transcription initiation factor IIA subunit 1 isoform 2
[Apis mellifera]
Length = 358
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 51/73 (69%), Gaps = 2/73 (2%)
Query: 314 AEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK 373
A ++EPLN +D++ D D + +T ++V+ Q+DK+TR++++WK LKDGIM+++ K
Sbjct: 288 ATAREEEPLN--SEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNLSGK 345
Query: 374 DILFNKATGEFDF 386
D +F K G+ ++
Sbjct: 346 DYVFQKMNGDAEW 358
>gi|50427499|ref|XP_462362.1| DEHA2G18920p [Debaryomyces hansenii CBS767]
gi|49658032|emb|CAG90869.1| DEHA2G18920p [Debaryomyces hansenii CBS767]
Length = 272
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
D DE L DE D +G+ ++L +DKV R K++WK LK+G+ +IN +D +
Sbjct: 209 DLDEGLESEKSDEEDGDQEGQ------IMLCLYDKVQRVKNKWKSNLKEGVANINGRDYV 262
Query: 377 FNKATGEFDF 386
F KATGE ++
Sbjct: 263 FQKATGESEW 272
>gi|426223699|ref|XP_004006012.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 4 [Ovis
aries]
Length = 435
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DV + + ++++ Q+DK+ R+K +WK LKDG+M +D +F
Sbjct: 369 EEDPLNSGDDVSEQDVP--DLFDMDNVIVCQYDKIHRSKDKWKFYLKDGVMCFGGRDYVF 426
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 427 AKAIGDAEW 435
>gi|448103235|ref|XP_004199990.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
gi|359381412|emb|CCE81871.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
Length = 273
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQ--HLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
+D + +N + DD L+ EE Q ++L +D+V R +++WK LK+G+ +IN KD
Sbjct: 202 NDSDDINSDLDDGLESEKSDEEDADQEGQIMLCLYDRVQRVRNKWKSNLKEGVANINGKD 261
Query: 375 ILFNKATGEFDF 386
+F KATGE ++
Sbjct: 262 YVFQKATGESEW 273
>gi|448099401|ref|XP_004199139.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
gi|359380561|emb|CCE82802.1| Piso0_002549 [Millerozyma farinosa CBS 7064]
Length = 272
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 317 DDDEPLNENDDDELDDVDQGEELNTQ--HLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
+D + +N + DD L+ EE Q ++L +D+V R +++WK LK+G+ +IN KD
Sbjct: 201 NDSDDINSDLDDGLESEKSDEEDADQEGQIMLCLYDRVQRVRNKWKSNLKEGVANINGKD 260
Query: 375 ILFNKATGEFDF 386
+F KATGE ++
Sbjct: 261 YVFQKATGESEW 272
>gi|406607660|emb|CCH41131.1| TFIIA-alpha and beta-like factor, 1-like factor [Wickerhamomyces
ciferrii]
Length = 207
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L ++KV R K++WKC LKDG+ +IN +D F K TGE ++
Sbjct: 165 IILCLYEKVLRVKNKWKCNLKDGVANINGRDYAFAKGTGESEW 207
>gi|426223693|ref|XP_004006009.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 1 [Ovis
aries]
Length = 1170
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DV + + ++++ Q+DK+ R+K +WK LKDG+M +D +F
Sbjct: 1104 EEDPLNSGDDVSEQDVP--DLFDMDNVIVCQYDKIHRSKDKWKFYLKDGVMCFGGRDYVF 1161
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1162 AKAIGDAEW 1170
>gi|171695472|ref|XP_001912660.1| hypothetical protein [Podospora anserina S mat+]
gi|170947978|emb|CAP60142.1| unnamed protein product [Podospora anserina S mat+]
Length = 541
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 21/65 (32%)
Query: 343 HLVLAQFDKVTRTKSRW---------------------KCALKDGIMHINNKDILFNKAT 381
H++L +DKV R K++W KC LKDG++ +N K+ +F+KAT
Sbjct: 477 HMMLCMYDKVQRVKNKWCVSLLPRNLYNISDTNTLGYRKCTLKDGVLTVNGKEYVFHKAT 536
Query: 382 GEFDF 386
GE+++
Sbjct: 537 GEYEW 541
>gi|426223697|ref|XP_004006011.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 3 [Ovis
aries]
Length = 1123
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD DV + + ++++ Q+DK+ R+K +WK LKDG+M +D +F
Sbjct: 1057 EEDPLNSGDDVSEQDVP--DLFDMDNVIVCQYDKIHRSKDKWKFYLKDGVMCFGGRDYVF 1114
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 1115 AKAIGDAEW 1123
>gi|354547630|emb|CCE44365.1| hypothetical protein CPAR2_401670 [Candida parapsilosis]
Length = 284
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WK LK+GI +I+ KD +F+KATGE ++
Sbjct: 241 QIMLCLYDKVQRIKNKWKSNLKEGIANIDGKDYVFHKATGECEW 284
>gi|296482566|tpg|DAA24681.1| TPA: STON1-GTF2A1L protein [Bos taurus]
Length = 388
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + + ++++ Q+DK+ R+K +WK LKDG+M +D +F
Sbjct: 322 EEDPLNSGDD--VSEQDVPDLFDMDNVIVCQYDKIHRSKDKWKFYLKDGVMCFGGRDYVF 379
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 380 AKAIGDAEW 388
>gi|170651810|gb|ACB21682.1| TfIIA-L [Lutzomyia intermedia]
Length = 57
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 320 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
EPLN DD + D D + +T ++V+ Q+DKVTR++++WK LKDGIM+I
Sbjct: 9 EPLNSEDD--VTDEDASDLFDTDNVVVCQYDKVTRSRNKWKFYLKDGIMNI 57
>gi|170651848|gb|ACB21701.1| TfIIA-L [Lutzomyia whitmani]
gi|170651852|gb|ACB21703.1| TfIIA-L [Lutzomyia whitmani]
gi|170651868|gb|ACB21711.1| TfIIA-L [Lutzomyia whitmani]
Length = 57
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 38/51 (74%), Gaps = 2/51 (3%)
Query: 320 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
EPLN DD + D D + +T ++V++Q+DK+TR++++WK LKDGIM+I
Sbjct: 9 EPLNSEDD--VTDEDASDLFDTDNVVVSQYDKITRSRNKWKFYLKDGIMNI 57
>gi|149237086|ref|XP_001524420.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146451955|gb|EDK46211.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 314
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WK LK+GI +I+ KD +F+KATGE ++
Sbjct: 271 QIMLCLYDKVQRIKNKWKLNLKEGIANIDGKDYVFHKATGECEW 314
>gi|71033955|ref|XP_766619.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353576|gb|EAN34336.1| hypothetical protein, conserved [Theileria parva]
Length = 210
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 10/103 (9%)
Query: 290 NIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQF 349
N V+T +P + + S+ +++ +D+ D ++ +D +LDD EE T LV+
Sbjct: 112 NPVSTESPKNNKDSSNLEKAGDNSEKDNPDTDISISDISDLDD----EEPETDDLVIGML 167
Query: 350 DKVTRTKSR------WKCALKDGIMHINNKDILFNKATGEFDF 386
DKVTR S+ WK LK GIM INN +I F+ GEF+F
Sbjct: 168 DKVTRPSSKKFGPPLWKLKLKYGIMQINNVEIPFDTLEGEFEF 210
>gi|91091108|ref|XP_969067.1| PREDICTED: similar to TFIIA [Tribolium castaneum]
gi|270013142|gb|EFA09590.1| hypothetical protein TcasGA2_TC011708 [Tribolium castaneum]
Length = 312
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 36/48 (75%)
Query: 339 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+T ++V+ Q+DK+ R +++WK LKDGIM+++ +D +F KA G+ ++
Sbjct: 265 FDTDNIVVCQYDKIIRNRNKWKFYLKDGIMNLSGQDYVFQKANGDAEW 312
>gi|122692319|ref|NP_001073698.1| TFIIA-alpha and beta-like factor [Bos taurus]
gi|75773523|gb|AAI05173.1| STON1-GTF2A1L readthrough transcript [Bos taurus]
Length = 388
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + + ++++ Q+DK+ R+K +WK LKDG+M +D +F
Sbjct: 322 EEDPLNSGDD--VSEQDVPDLFDMDNVIVCQYDKIHRSKDKWKFYLKDGVMCFGGRDYVF 379
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 380 AKAIGDAEW 388
>gi|164660676|ref|XP_001731461.1| hypothetical protein MGL_1644 [Malassezia globosa CBS 7966]
gi|159105361|gb|EDP44247.1| hypothetical protein MGL_1644 [Malassezia globosa CBS 7966]
Length = 217
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WKC L+DG+ I +D LF+K G +
Sbjct: 164 MILCLYDKVQRVKNKWKCVLRDGVASIGGRDYLFSKCNGYVSY 206
>gi|448529684|ref|XP_003869892.1| Toa1 protein [Candida orthopsilosis Co 90-125]
gi|380354246|emb|CCG23759.1| Toa1 protein [Candida orthopsilosis]
Length = 282
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 33/44 (75%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WK LK+G+ +I+ KD +F+KATGE ++
Sbjct: 239 QIMLCLYDKVQRIKNKWKSNLKEGVANIDGKDYVFHKATGECEW 282
>gi|399949624|gb|AFP65282.1| hypothetical protein CMESO_83 [Chroomonas mesostigmatica CCMP1168]
Length = 280
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 327 DDELD-DVDQG-EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
++EL+ QG +E + ++ +LA +KV R ++W+ LKDGI+H+N KD LFN EF
Sbjct: 219 EEELESQFSQGIDEQSPKNFILALSEKVNRRNTKWRVILKDGILHMNEKDFLFNTCKCEF 278
>gi|170651798|gb|ACB21676.1| TfIIA-L [Lutzomyia intermedia]
gi|170651800|gb|ACB21677.1| TfIIA-L [Lutzomyia intermedia]
gi|170651804|gb|ACB21679.1| TfIIA-L [Lutzomyia intermedia]
gi|170651806|gb|ACB21680.1| TfIIA-L [Lutzomyia intermedia]
gi|170651808|gb|ACB21681.1| TfIIA-L [Lutzomyia intermedia]
gi|170651812|gb|ACB21683.1| TfIIA-L [Lutzomyia intermedia]
gi|170651814|gb|ACB21684.1| TfIIA-L [Lutzomyia intermedia]
gi|170651816|gb|ACB21685.1| TfIIA-L [Lutzomyia intermedia]
gi|170651818|gb|ACB21686.1| TfIIA-L [Lutzomyia intermedia]
gi|170651820|gb|ACB21687.1| TfIIA-L [Lutzomyia intermedia]
gi|170651822|gb|ACB21688.1| TfIIA-L [Lutzomyia intermedia]
gi|170651824|gb|ACB21689.1| TfIIA-L [Lutzomyia intermedia]
gi|170651826|gb|ACB21690.1| TfIIA-L [Lutzomyia intermedia]
gi|170651828|gb|ACB21691.1| TfIIA-L [Lutzomyia intermedia]
gi|170651830|gb|ACB21692.1| TfIIA-L [Lutzomyia intermedia]
gi|170651832|gb|ACB21693.1| TfIIA-L [Lutzomyia intermedia]
gi|170651834|gb|ACB21694.1| TfIIA-L [Lutzomyia intermedia]
gi|170651836|gb|ACB21695.1| TfIIA-L [Lutzomyia intermedia]
gi|170651838|gb|ACB21696.1| TfIIA-L [Lutzomyia intermedia]
gi|170651840|gb|ACB21697.1| TfIIA-L [Lutzomyia intermedia]
gi|170651842|gb|ACB21698.1| TfIIA-L [Lutzomyia intermedia]
gi|170651844|gb|ACB21699.1| TfIIA-L [Lutzomyia whitmani]
gi|170651846|gb|ACB21700.1| TfIIA-L [Lutzomyia whitmani]
gi|170651850|gb|ACB21702.1| TfIIA-L [Lutzomyia whitmani]
gi|170651854|gb|ACB21704.1| TfIIA-L [Lutzomyia whitmani]
gi|170651856|gb|ACB21705.1| TfIIA-L [Lutzomyia whitmani]
gi|170651858|gb|ACB21706.1| TfIIA-L [Lutzomyia whitmani]
gi|170651860|gb|ACB21707.1| TfIIA-L [Lutzomyia whitmani]
gi|170651862|gb|ACB21708.1| TfIIA-L [Lutzomyia whitmani]
gi|170651866|gb|ACB21710.1| TfIIA-L [Lutzomyia whitmani]
gi|170651870|gb|ACB21712.1| TfIIA-L [Lutzomyia whitmani]
gi|170651872|gb|ACB21713.1| TfIIA-L [Lutzomyia whitmani]
gi|170651874|gb|ACB21714.1| TfIIA-L [Lutzomyia whitmani]
gi|170651876|gb|ACB21715.1| TfIIA-L [Lutzomyia whitmani]
gi|170651878|gb|ACB21716.1| TfIIA-L [Lutzomyia whitmani]
gi|170651880|gb|ACB21717.1| TfIIA-L [Lutzomyia whitmani]
gi|170651882|gb|ACB21718.1| TfIIA-L [Lutzomyia whitmani]
gi|170651884|gb|ACB21719.1| TfIIA-L [Lutzomyia whitmani]
Length = 57
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 320 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
EPLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIM+I
Sbjct: 9 EPLNSEDD--VTDEDASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNI 57
>gi|313235126|emb|CBY24998.1| unnamed protein product [Oikopleura dioica]
gi|313246320|emb|CBY35241.1| unnamed protein product [Oikopleura dioica]
Length = 331
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 61/107 (57%), Gaps = 7/107 (6%)
Query: 282 QGVVNEDYNIVNTP--APNDIQASTPAVVTQNDAAEDDDDEPLNE---NDDDELDDVDQG 336
+G+++ED IV +D+ + + + + DA D D E ++E N DD
Sbjct: 224 RGLLDEDAEIVVQIDGVGDDVSSGSLSSTSDEDA--DSDTEHIDEPALNSDDNCPSPSAD 281
Query: 337 EELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGE 383
E + +++++ +DK+TR K++WK LK+GIM++ D +F KA+G+
Sbjct: 282 ETFDCENILICMYDKITRNKNQWKIILKEGIMNLRGVDHVFWKASGD 328
>gi|406694572|gb|EKC97896.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 8904]
Length = 200
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 382
+V +DKV R K++WK KDG++HIN +D LF K G
Sbjct: 142 IVFCVYDKVQRVKNKWKTVFKDGMIHINGRDYLFAKCQG 180
>gi|170651864|gb|ACB21709.1| TfIIA-L [Lutzomyia whitmani]
Length = 57
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 320 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
EPLN DD + D D + +T ++V+ Q+DK+TR++++WK LKDGIM+I
Sbjct: 9 EPLNSEDD--VTDEDASDPFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNI 57
>gi|126274465|ref|XP_001387553.1| transcription initiation factor TFIIA large subunit (TOA1)
[Scheffersomyces stipitis CBS 6054]
gi|126213423|gb|EAZ63530.1| transcription initiation factor TFIIA large subunit (TOA1)
[Scheffersomyces stipitis CBS 6054]
Length = 249
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 33/44 (75%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
++L +DKV R K++WK LK+GI +I+ KD +F+KATGE ++
Sbjct: 206 QIMLCLYDKVQRIKNKWKSNLKEGIANIDGKDYVFHKATGESEW 249
>gi|401885134|gb|EJT49261.1| ribosomal protein [Trichosporon asahii var. asahii CBS 2479]
Length = 562
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 344 LVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 382
+V +DKV R K++WK KDG++HIN +D LF K G
Sbjct: 142 IVFCVYDKVQRVKNKWKTVFKDGMIHINGRDYLFAKCQG 180
>gi|403221450|dbj|BAM39583.1| kinesin [Theileria orientalis strain Shintoku]
Length = 926
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 10/85 (11%)
Query: 308 VTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSR------WKC 361
+ ++ AEDD D L+ ++ +LDD +E T LV+ DKVTR S+ WK
Sbjct: 846 IEESKEAEDDPDTELSISEISDLDD----DEPETNDLVIGMLDKVTRPSSKKFGPPLWKV 901
Query: 362 ALKDGIMHINNKDILFNKATGEFDF 386
LK GIM +NN +I F+ GEF+F
Sbjct: 902 KLKYGIMQVNNVEIPFDTLEGEFEF 926
>gi|403359039|gb|EJY79177.1| General transcription factor IIA, 1 [Oxytricha trifallax]
Length = 348
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ ++ + AQ++KV RTK ++KC KD I+H+N KD + K T + ++
Sbjct: 302 DCKNYIAAQYEKVQRTKQKYKCIFKDAIIHLNGKDFVVKKFTADIEY 348
>gi|50548421|ref|XP_501680.1| YALI0C10472p [Yarrowia lipolytica]
gi|49647547|emb|CAG81987.1| YALI0C10472p [Yarrowia lipolytica CLIB122]
Length = 249
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 24/92 (26%)
Query: 308 VTQNDAAEDDDDEPL-------------NENDDDELDDVDQGEELNTQHLVLAQFDKVTR 354
V Q D AEDD+DE NE++DD N + +L +D++ R
Sbjct: 169 VPQTDGAEDDEDELNSDLDDSSDDNLSGNEDEDD-----------NHGNTILCVYDRIHR 217
Query: 355 TKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
K+ K +DGI+++N KD +F +ATGE ++
Sbjct: 218 VKNNRKFTFRDGIVNVNRKDYVFGRATGESEW 249
>gi|240274639|gb|EER38155.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
capsulatus H143]
gi|325090973|gb|EGC44283.1| transcription factor TFIIA complex subunit Toa1 [Ajellomyces
capsulatus H88]
Length = 425
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 311 NDAAEDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGI 367
N E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI
Sbjct: 360 NTGREEADEDAINSDLDDSEDMLDDSNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGI 418
Query: 368 MHINNKD 374
+ K+
Sbjct: 419 LTSGGKE 425
>gi|225561537|gb|EEH09817.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 424
Score = 51.2 bits (121), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 311 NDAAEDDDDEPLNENDDDE---LDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGI 367
N E+ D++ +N + DD LDD + G++ Q ++L +DKV R KS+WKC LKDGI
Sbjct: 359 NTGREEADEDAINSDLDDSEDMLDDSNDGDDAVGQ-VMLCTYDKVQRVKSKWKCTLKDGI 417
Query: 368 MHINNKD 374
+ K+
Sbjct: 418 LTSGGKE 424
>gi|428673418|gb|EKX74331.1| conserved hypothetical protein [Babesia equi]
Length = 223
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 83/186 (44%), Gaps = 37/186 (19%)
Query: 236 RQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTP 295
+Q + N+ + A + KIP+ I D ++ + N+++ + ++++ +
Sbjct: 40 KQSWIENLNKRLNAVKTETDAKIPRTSSFIQDSFES--KSENVHDRESSSDDEFLDADVE 97
Query: 296 A---------PNDIQASTP-----------AVVTQNDAAEDDDDEPLNENDDDELDDVD- 334
+ P D TP A T+ D+ ++ + +P + DD +DD D
Sbjct: 98 SVTVSDLKSLPQDTHVETPIAKSERTEAIFASETKEDSNKEVESDPKSTRDDKNVDDSDV 157
Query: 335 --------QGEELNTQHLVLAQFDKVTRTKSR------WKCALKDGIMHINNKDILFNKA 380
+ +E +Q +++ DK+TR S+ WK LK GIM IN+ +I F+
Sbjct: 158 SFSDVSDLEDQEPESQDMIIGILDKITRPSSKKFGPPLWKLKLKHGIMQINDVEIPFDSL 217
Query: 381 TGEFDF 386
GEF+F
Sbjct: 218 QGEFEF 223
>gi|326505918|dbj|BAJ91198.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 321
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 334 DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ GEE + +++V +DKV R K++WK +DG+ +N KD LF KAT + ++
Sbjct: 270 EDGEEAD-ENIVFCVYDKVNRVKNKWKMVFRDGMAKVNGKDYLFAKATCDVEW 321
>gi|387593838|gb|EIJ88862.1| hypothetical protein NEQG_00681 [Nematocida parisii ERTm3]
gi|387595142|gb|EIJ92768.1| hypothetical protein NEPG_02459 [Nematocida parisii ERTm1]
Length = 175
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D + ++E L+ ND E D D E T++++L FDKVTR K + +C LK G +
Sbjct: 100 QYDGLPEGNEEELDSNDLSE-SDCDIESEEPTKNVMLCLFDKVTRVKDKRRCTLKHGFLT 158
Query: 370 INNKDILFNKATGEFDF 386
I D FN A G+ ++
Sbjct: 159 IGRTDYTFNVANGDLEW 175
>gi|378756235|gb|EHY66260.1| hypothetical protein NERG_00956 [Nematocida sp. 1 ERTm2]
Length = 175
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMH 369
Q D + ++E L+ ND E D D E T++++L FDKVTR K + +C LK G +
Sbjct: 100 QYDGLPEGNEEELDSNDLSE-SDCDIESEEPTKNVMLCLFDKVTRVKDKRRCTLKHGFLT 158
Query: 370 INNKDILFNKATGEFDF 386
I D FN A G+ ++
Sbjct: 159 IGRTDYTFNVANGDLEW 175
>gi|170651802|gb|ACB21678.1| TfIIA-L [Lutzomyia intermedia]
Length = 57
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
++EPLN DD + D + +T ++V+ Q+DK+TR++++WK LKDGIM+I
Sbjct: 7 EEEPLNSEDD--VTDEGASDLFDTDNVVVCQYDKITRSRNKWKFYLKDGIMNI 57
>gi|241954470|ref|XP_002419956.1| transcription factor IIA (TFIIA) subunit alpha, putative [Candida
dubliniensis CD36]
gi|223643297|emb|CAX42171.1| transcription factor IIA (TFIIA) subunit alpha, putative [Candida
dubliniensis CD36]
Length = 268
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ L FDKV R K++WK L GI +IN KD +F+KA GE ++
Sbjct: 225 NFALCLFDKVQRIKNKWKSTLVAGIANINGKDYVFHKANGESEW 268
>gi|313217437|emb|CBY38533.1| unnamed protein product [Oikopleura dioica]
Length = 802
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 27/36 (75%)
Query: 341 TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDIL 376
T + ++ Q+DK+ R K+RW+ LKDGIMH++ +D +
Sbjct: 370 TDNQIVCQYDKIQRVKNRWRFCLKDGIMHLHGRDFV 405
>gi|68470856|ref|XP_720435.1| hypothetical protein CaO19.2682 [Candida albicans SC5314]
gi|68471314|ref|XP_720205.1| hypothetical protein CaO19.10197 [Candida albicans SC5314]
gi|46442061|gb|EAL01353.1| hypothetical protein CaO19.10197 [Candida albicans SC5314]
gi|46442302|gb|EAL01592.1| hypothetical protein CaO19.2682 [Candida albicans SC5314]
Length = 275
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ L FDKV R K++WK L GI +IN KD +F+KA GE ++
Sbjct: 232 NFALCLFDKVQRIKNKWKSTLVAGIANINGKDYVFHKANGESEW 275
>gi|238881539|gb|EEQ45177.1| hypothetical protein CAWG_03491 [Candida albicans WO-1]
Length = 275
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGE 383
+ L FDKV R K++WK L GI +IN KD +F+KA GE
Sbjct: 232 NFALCLFDKVQRIKNKWKSTLVAGIANINGKDYVFHKANGE 272
>gi|443911024|gb|ELU35575.1| TFIIA domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 100
Score = 48.9 bits (115), Expect = 0.005, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 348 QFDKVTRTKSRWKCALKDGIMHINNKDILFNKATG 382
+ +V R K++WKC LKDG++H+N KD LF K G
Sbjct: 14 RLSQVQRVKNKWKCVLKDGMIHVNGKDYLFMKCNG 48
>gi|301769485|ref|XP_002920171.1| PREDICTED: mucin-5AC-like [Ailuropoda melanoleuca]
Length = 2878
Score = 48.9 bits (115), Expect = 0.005, Method: Composition-based stats.
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 67 PTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNST 112
P++ +L PL P PLP S PLP STPLP S PLP +A ST
Sbjct: 1999 PSSTLLPSSAPL--PSSVPLPSSAPLPSSTPLPSSAPLPSSAAPST 2042
Score = 46.2 bits (108), Expect = 0.030, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 75 PTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDY 122
P+ P PLP S PLP S PLP STPLP +A + P+ + Y
Sbjct: 1999 PSSTLLPSSAPLPSSVPLPSSAPLPSSTPLPSSAPLPSSAAPSTRTCY 2046
Score = 43.5 bits (101), Expect = 0.18, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 57 PYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGT 107
PY + +P E + + P PLP S PLP S PLP S PLP +
Sbjct: 1927 PYLTSPTTRSPAPESTSVLSTVPLPSSAPLPSSAPLPSSVPLPSSVPLPSS 1977
>gi|440494088|gb|ELQ76500.1| RNA polymerase II transcription initiation factor TFIIA, large
chain [Trachipleistophora hominis]
Length = 122
Score = 48.1 bits (113), Expect = 0.007, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Query: 320 EPLNENDD--DELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
EP+ E+ D DD+ +G+ NTQ+ ++ +DKVT++K +W+ K G ++I N D F
Sbjct: 57 EPIVESASCSDSEDDI-KGK--NTQNFMMCLYDKVTKSKYKWRVNFKQGFLNIGNSDYAF 113
Query: 378 NKATGEFDF 386
+ G+ D+
Sbjct: 114 SLGQGDLDW 122
>gi|449015336|dbj|BAM78738.1| similar to transcription factor IIA large subunit [Cyanidioschyzon
merolae strain 10D]
Length = 198
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 325 NDDDELDDVDQGEELNTQHLVLAQFDKV----TRTKSRWKCALKDGIMHINNKDILFNKA 380
+DDDE+ V E T + VL+Q+++V T + W+ L+D ++HIN +D+L N+
Sbjct: 133 DDDDEISQVAGQPEPETANYVLSQYERVLAPSTNKQRIWRVFLRDAMVHINGQDLLLNQL 192
Query: 381 TGEFDF 386
+FD+
Sbjct: 193 QCQFDW 198
>gi|340713530|ref|XP_003395295.1| PREDICTED: transcription initiation factor IIA subunit 1-like
isoform 4 [Bombus terrestris]
Length = 333
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 88/203 (43%), Gaps = 47/203 (23%)
Query: 212 IPQQDGAGDAMSEIFELEV--SEFPGRQDS------VTTANREIFANLASSSVK------ 257
+P Q G DA + ++V S G Q V TA + ANLAS+ ++
Sbjct: 150 LPPQTGVPDAPLRVLTIQVPASAIQGNQLHTILTGPVITAAMGLPANLASTLLQQHVNST 209
Query: 258 --------------IPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQAS 303
I QLDGP+ D ++D D +
Sbjct: 210 LQGQATLTPLQLNNIAQLDGPLGDS-----------------SDDDEEEEEEDNEDEEED 252
Query: 304 TPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCAL 363
+ +EPL N +D++ D D + +T ++V+ Q+DK+TR++++WK L
Sbjct: 253 LDDKEEDENDEAAAREEPL--NSEDDVTDDDPADLFDTDNVVVCQYDKITRSRNKWKFYL 310
Query: 364 KDGIMHINNKDILFNKATGEFDF 386
KDGIM++N KD +F K G+ ++
Sbjct: 311 KDGIMNLNGKDYVFQKMNGDAEW 333
>gi|429965781|gb|ELA47778.1| hypothetical protein VCUG_00739 [Vavraia culicis 'floridensis']
Length = 120
Score = 47.8 bits (112), Expect = 0.009, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 331 DDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
D D+ + NTQ+ ++ +DKVT++K +W+ K G ++I N D F+ G+ D+
Sbjct: 65 DSEDEIKGKNTQNFMMCLYDKVTKSKYKWRVNFKQGFLNIGNSDYAFSLGQGDLDW 120
>gi|396081097|gb|AFN82716.1| transcription initiation factor TFIIA-like protein [Encephalitozoon
romaleae SJ-2008]
Length = 157
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 287 EDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLN-ENDDDELDDVDQGEELNTQHLV 345
E Y P+ + + D +D E L+ + D E+ G++ N + +
Sbjct: 61 EGYRGYERPSEGRVNGFNGKTTVEKDVGMFEDYESLSASSGDSEI----IGKKDNVGNCM 116
Query: 346 LAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+ + KV +K +WKC K G + I N D +FN A GE ++
Sbjct: 117 VCLYVKVNMSKGKWKCTFKQGFISIGNIDFVFNSAQGELEW 157
>gi|21220728|ref|NP_626507.1| multidomain-containing protein family [Streptomyces coelicolor
A3(2)]
gi|6469244|emb|CAB61705.1| putative multi-domain regulatory protein [Streptomyces coelicolor
A3(2)]
Length = 1334
Score = 47.8 bits (112), Expect = 0.010, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 49/136 (36%), Gaps = 12/136 (8%)
Query: 38 APKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTP 97
A PAPG P GT P + + P TP PG+ P PGSTP
Sbjct: 383 AGTTPAPG---------TAPAPGTA---GPARDTSYAPGTAPVAGTTPAPGTAPAPGSTP 430
Query: 98 LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPSPWMNPR 157
PG+ P PGTA G PAS +G +S P PR
Sbjct: 431 APGTVPAPGTAPAPGPQPADGRRPVTGPASGTGPGAATPPEAAAAASAGSAPSPAPEGPR 490
Query: 158 PPLSVDVNVAYVEGRD 173
P ++ + GRD
Sbjct: 491 PRGNLRARLTSFVGRD 506
>gi|410954749|ref|XP_003984024.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 2 [Felis
catus]
Length = 1182
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSR-WKCALKDGIM 368
Q D E+D PLN DD DV + +T ++++ Q+DKV + R WK LKDG+M
Sbjct: 1110 QIDVVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKVPYSPFRLWKFYLKDGVM 1164
Query: 369 HINNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 1165 CFGGRDYVFAKAIGDAEW 1182
>gi|410954755|ref|XP_003984027.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 5 [Felis
catus]
Length = 444
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSR-WKCALKDGIM 368
Q D E+D PLN DD DV + +T ++++ Q+DKV + R WK LKDG+M
Sbjct: 372 QIDVVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKVPYSPFRLWKFYLKDGVM 426
Query: 369 HINNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 427 CFGGRDYVFAKAIGDAEW 444
>gi|428181881|gb|EKX50743.1| hypothetical protein GUITHDRAFT_103334 [Guillardia theta CCMP2712]
Length = 249
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHI----NNKDILFNKATGEFDF 386
+T +L+L Q++KV+RTK++WK LK G+M + +D +F K + +F
Sbjct: 197 STHNLILCQYEKVSRTKNKWKAQLKFGVMTLAINDGGRDFVFKKGNSDMNF 247
>gi|410954753|ref|XP_003984026.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 4 [Felis
catus]
Length = 1135
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSR-WKCALKDGIM 368
Q D E+D PLN DD DV + +T ++++ Q+DKV + R WK LKDG+M
Sbjct: 1063 QIDVVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKVPYSPFRLWKFYLKDGVM 1117
Query: 369 HINNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 1118 CFGGRDYVFAKAIGDAEW 1135
>gi|410954751|ref|XP_003984025.1| PREDICTED: TFIIA-alpha and beta-like factor-like isoform 3 [Felis
catus]
Length = 478
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 310 QNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSR-WKCALKDGIM 368
Q D E+D PLN DD DV + +T ++++ Q+DKV + R WK LKDG+M
Sbjct: 406 QIDVVEED---PLNSGDDVSEQDVP--DLFDTDNVIVCQYDKVPYSPFRLWKFYLKDGVM 460
Query: 369 HINNKDILFNKATGEFDF 386
+D +F KA G+ ++
Sbjct: 461 CFGGRDYVFAKAIGDAEW 478
>gi|70996176|ref|XP_752843.1| transcription factor TFIIA complex subunit Toa1 [Aspergillus
fumigatus Af293]
gi|66850478|gb|EAL90805.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus fumigatus Af293]
gi|159131597|gb|EDP56710.1| transcription factor TFIIA complex subunit Toa1, putative
[Aspergillus fumigatus A1163]
Length = 392
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 325 NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
+D D+L D E + ++L +DKV R K++WKC LKDGI+ K+
Sbjct: 343 DDPDDLVAEDHDAEDSVGEVMLCTYDKVQRVKNKWKCTLKDGILTTGGKE 392
>gi|269859665|ref|XP_002649557.1| transcription initiation factor IIA large chain [Enterocytozoon
bieneusi H348]
gi|220067108|gb|EED44576.1| transcription initiation factor IIA large chain [Enterocytozoon
bieneusi H348]
Length = 144
Score = 45.1 bits (105), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 320 EPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNK-DILFN 378
E +E++ DE D+ + E+ TQ + F KV ++K +WKC KDG ++I+ + D FN
Sbjct: 78 EFSDESEYDEDSDIKKAEKY-TQSYFICLFVKVIKSKGKWKCIFKDGFINIDGREDQPFN 136
Query: 379 KATGEFDF 386
A+GE ++
Sbjct: 137 NASGELEW 144
>gi|350638671|gb|EHA27027.1| hypothetical protein ASPNIDRAFT_46333 [Aspergillus niger ATCC 1015]
Length = 386
Score = 45.1 bits (105), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 325 NDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
+D D+L D E ++L +DKV R K++WKC LKDGI+ K+
Sbjct: 337 DDPDDLVAEDHDAEDAVGQVMLCTYDKVQRVKNKWKCTLKDGILTTGGKE 386
>gi|225677571|gb|EEH15855.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 405
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 343 HLVLAQFDKVTRTKSRWKCALKDGIMHINNKD 374
++L +DKV R KS+WKC LKDGI+ K+
Sbjct: 374 QVMLCTYDKVQRVKSKWKCTLKDGILTSGGKE 405
>gi|258563172|ref|XP_002582331.1| predicted protein [Uncinocarpus reesii 1704]
gi|237907838|gb|EEP82239.1| predicted protein [Uncinocarpus reesii 1704]
Length = 385
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 103/259 (39%), Gaps = 45/259 (17%)
Query: 164 VNVAYVEGRD-------EADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHNGGYNIP--- 213
++A D A HQ Q +S ++R P Q+ G P
Sbjct: 135 AHIAQQRAADALQQRYGAAAASQIHQLQAQSQAALSLPGQQRFQ-PGQFPAGQSQDPKLP 193
Query: 214 -----------QQDGAGDAMSEIFELEVSEFPGRQDSV----TTANREIFANLASSSVKI 258
Q DGA D+ S+ +E R+++ A+R + + +K
Sbjct: 194 PHQAPQPVGHSQTDGADDSGSDPLTEWKAEVARRREAAEQNGANADRVMREYV---EIKG 250
Query: 259 PQLDG-PIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDD 317
Q++G + P D N + + E+ + + A PA Q + +
Sbjct: 251 RQMEGNGLLAPLRDRYPRANGKQRKDAIKENPTLSAL-----VAAEAPATPRQANGYDGV 305
Query: 318 DDEPLNENDDDELDDVDQGEELNTQ----------HLVLAQFDKVTRTKSRWKCALKDGI 367
DD + +++D++ + D + + ++L +DKV R KS+WKC LKDGI
Sbjct: 306 DDYGIKKDEDEDAINSDLDDPDDPLDDPEGDDAVGQVMLCTYDKVQRVKSKWKCTLKDGI 365
Query: 368 MHINNKDILFNKATGEFDF 386
+ K+ +F+K GEF++
Sbjct: 366 LTTGGKEYVFHKGNGEFEW 384
>gi|393220362|gb|EJD05848.1| hypothetical protein FOMMEDRAFT_79779, partial [Fomitiporia
mediterranea MF3/22]
Length = 823
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 62/171 (36%), Positives = 82/171 (47%), Gaps = 29/171 (16%)
Query: 38 APKQPAPGGPITPVHDLNVPYEGTE-EYETPTAEILFPPTPLQTPI-QTPL-PGSTP--- 91
A + P G TP+H P GT E TP ++ F P PL TP Q L PG+TP
Sbjct: 376 AVQTPLLGDENTPLH--TAPGGGTGFEGATPRHQVAFTPNPLATPARQDSLGPGATPRSE 433
Query: 92 LPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPS 151
PG+TPL TPL DN + N P+G+ AS G + G G SS S
Sbjct: 434 FPGATPL--RTPL---RDNLSLN-PSGA------ASSVGDTPRERRGRGGMSSL----KS 477
Query: 152 PWMN-PRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAG-KRKRED 200
+MN PRP + ++ V E +DE+ T+ P+ +D A KR RE+
Sbjct: 478 AFMNLPRPENNFELLVPEDEEQDES---TAAVPMEEDAAERDARLKRLREE 525
>gi|345571083|gb|EGX53898.1| hypothetical protein AOL_s00004g557 [Arthrobotrys oligospora ATCC
24927]
Length = 781
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 45 GGPITPVHDLNVPYEGTEEYE--TPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGST 102
GG TP+H+ +GT +E TP + P P+ TP++ +PG+TPL + LPG T
Sbjct: 393 GGENTPLHE----GKGTTGFEGMTPRRSAIVTPNPMATPMRPGMPGATPL--HSGLPGQT 446
Query: 103 PLPGTADNSTYN 114
PL DN N
Sbjct: 447 PLRTPRDNLAIN 458
>gi|156084039|ref|XP_001609503.1| DNA-directed RNA polymerase II large subunit [Babesia bovis T2Bo]
gi|154796754|gb|EDO05935.1| DNA-directed RNA polymerase II large subunit, putative [Babesia
bovis]
Length = 179
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 315 EDDDDEPLNENDDDELD--DVDQGEELNTQHLVLAQFDKVTRTKSR------WKCALKDG 366
E DD E+D + LD D+D +E T+ +V+ DK++R ++ WK LK G
Sbjct: 101 EQTDDTTECEDDMEILDVSDLDD-QEPETKDIVIGIIDKISRPSTKKTTAPTWKVKLKYG 159
Query: 367 IMHINNKDILFNKATGEFDF 386
I+ IN +I F+ GEF+F
Sbjct: 160 ILQINGVEIPFDNLEGEFEF 179
>gi|406698650|gb|EKD01884.1| pre-mRNA splicing factor CEF1 (PRP19-associated complex protein 85)
[Trichosporon asahii var. asahii CBS 8904]
Length = 827
Score = 41.2 bits (95), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 37 SAPKQPAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGS- 95
S+ + P G TP+H+ P G + TP TP P +TP G+
Sbjct: 390 SSVQTPLLGEENTPMHEEAAPGAG------------YSATPRHNVASTPNPLATPARGAM 437
Query: 96 -TP--LPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPP 149
TP LPG+TPL DN N P G+ TPA+D +A+ + +P P
Sbjct: 438 ATPRGLPGATPLRTPRDNLALNTPAGAGWGETPATDRRRMKDARRALKAGFASLPKP 494
>gi|167519254|ref|XP_001743967.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777929|gb|EDQ91545.1| predicted protein [Monosiga brevicollis MX1]
Length = 158
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 339 LNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+T + +L +D+V++TK +KCAL++ ++ ++ K +F+K E +
Sbjct: 111 FHTANSLLCFYDRVSKTKGAYKCALRNAVLTVDRKSYVFSKIQAELKW 158
>gi|221052724|ref|XP_002261085.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
gi|194247089|emb|CAQ38273.1| hypothetical protein, conserved in Plasmodium species [Plasmodium
knowlesi strain H]
Length = 687
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 307 VVTQNDAAEDDDDEPLNENDD---DELDDVDQGEELNTQHLVLAQFDKVTR------TKS 357
+V A+DD+ + LNE DD +L DVD T ++++ DK+T+ S
Sbjct: 76 IVELEHRAQDDEADELNELDDISISDLSDVDPP----TSNVIVGICDKITKPCGRRNASS 131
Query: 358 RWKCALKDGIMHINNKDILFNKATGEFDF 386
WK LK G+M ++ K++ F G+ +
Sbjct: 132 NWKIKLKGGLMKVDGKEMFFRSLQGDLEL 160
>gi|194769960|ref|XP_001967069.1| GF21853 [Drosophila ananassae]
gi|190622864|gb|EDV38388.1| GF21853 [Drosophila ananassae]
Length = 1618
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 74 PPTPLQTPIQTP----LPGSTPLPGSTPLPGSTPLPGTADN-STYNIPTGSSDYPTPASD 128
PP P PI P LPG T LP +PLPG LPG A S ++P G+S P+ AS
Sbjct: 1476 PPRPQTAPITAPAMASLPGVTSLPSVSPLPGVASLPGLASLPSAVSLPGGAS-LPSVASL 1534
Query: 129 SG 130
+G
Sbjct: 1535 AG 1536
>gi|32398660|emb|CAD98620.1| DNA-directed RNA polymerase ii largest subunit, possible
[Cryptosporidium parvum]
Length = 297
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 329 ELDDVDQGEELNTQHLVLAQFDKVTR-------TKSRWKCALKDGIMHINNKDILFNKAT 381
+LDD EE +++ F+KV R K +W+ L++GI I N++I F+
Sbjct: 237 DLDD----EEPECSDVIIGHFEKVIRPYTRKKNQKGKWRVKLRNGIAQIANQEIPFDTLI 292
Query: 382 GEFDF 386
GEF+F
Sbjct: 293 GEFEF 297
>gi|156094515|ref|XP_001613294.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802168|gb|EDL43567.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 610
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 13/80 (16%)
Query: 315 EDDDDEPLNENDD---DELDDVDQGEELNTQHLVLAQFDKVTR------TKSRWKCALKD 365
+DD+ + LNE DD +L DVD T ++++ DK+T+ S WK LK
Sbjct: 96 QDDEADELNELDDISISDLSDVDPP----TSNVIVGICDKITKPCGRRNASSNWKIKLKG 151
Query: 366 GIMHINNKDILFNKATGEFD 385
G+M ++ K++ F G+ D
Sbjct: 152 GLMKVDGKEMFFRSLQGDLD 171
>gi|66475180|ref|XP_625357.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46226334|gb|EAK87343.1| hypothetical protein cgd6_180 [Cryptosporidium parvum Iowa II]
Length = 333
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 329 ELDDVDQGEELNTQHLVLAQFDKVTR-------TKSRWKCALKDGIMHINNKDILFNKAT 381
+LDD EE +++ F+KV R K +W+ L++GI I N++I F+
Sbjct: 273 DLDD----EEPECSDVIIGHFEKVIRPYTRKKNQKGKWRVKLRNGIAQIANQEIPFDTLI 328
Query: 382 GEFDF 386
GEF+F
Sbjct: 329 GEFEF 333
>gi|160878988|ref|YP_001557956.1| redoxin domain-containing protein [Clostridium phytofermentans
ISDg]
gi|160427654|gb|ABX41217.1| Redoxin domain protein [Clostridium phytofermentans ISDg]
Length = 329
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 75 PTPLQTPIQT--PLPGSTPLPGSTPLPGSTPLP 105
P P +TP+ T P+P STP P STP+P STP+P
Sbjct: 153 PVPTKTPVSTSTPVPTSTPFPTSTPVPTSTPVP 185
>gi|30984464|ref|NP_851896.1| large tegument protein [Macacine herpesvirus 1]
gi|30844278|gb|AAP41454.1| very large tegument protein [Macacine herpesvirus 1]
Length = 3288
Score = 39.3 bits (90), Expect = 3.1, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 42 PAPGGPITPVHDLNVPYEGTEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGS 101
P P GP T + P T P PPTP P P P + P P
Sbjct: 455 PTPAGPTTASSEPPTPAGPTTASSEPPTPAGRPPTPAGRP---PTPANPTASSEPPTPAG 511
Query: 102 TPLPGTADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPSSYMPPPPS 151
P T PT SS+ PTP + G PSS PP +
Sbjct: 512 RPPTPAGRPPTPANPTASSEPPTPNPE---------GAPAPSSNEQPPAA 552
>gi|67585023|ref|XP_665087.1| DNA-directed RNA polymerase ii largest subunit [Cryptosporidium
hominis TU502]
gi|54655497|gb|EAL34857.1| DNA-directed RNA polymerase ii largest subunit [Cryptosporidium
hominis]
Length = 214
Score = 39.3 bits (90), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 329 ELDDVDQGEELNTQHLVLAQFDKVTR-------TKSRWKCALKDGIMHINNKDILFNKAT 381
+LDD EE +++ F+KV R K +W+ L++GI I N++I F+
Sbjct: 154 DLDD----EEPECSDVIIGHFEKVIRPYTRKKNQKGKWRVKLRNGIAQIANQEIPFDTLI 209
Query: 382 GEFDF 386
GEF+F
Sbjct: 210 GEFEF 214
>gi|429962118|gb|ELA41662.1| hypothetical protein VICG_01295 [Vittaforma corneae ATCC 50505]
Length = 118
Score = 38.9 bits (89), Expect = 4.3, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 299 DIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLV--LAQFDKVTRTK 356
++ S P V T + A + DE ++ D L + D+ + L Q V + F KVT+TK
Sbjct: 28 EVLQSEPVVNTADLAELQERDESFEDSHSDLLSEEDRLDRLERQIGVYMVCFFTKVTKTK 87
Query: 357 SRWKCALKDGIMHINNKDILFNKATGEF 384
++WKC+ K+G ++++N DI ++ ATGEF
Sbjct: 88 TKWKCSFKNGFINLDNYDIPYSTATGEF 115
>gi|453054178|gb|EMF01633.1| DedA protein [Streptomyces mobaraensis NBRC 13819 = DSM 40847]
Length = 493
Score = 38.1 bits (87), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 27/54 (50%)
Query: 77 PLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSG 130
P P P PGS P PGS P PG+ P PG A S G++ P PAS G
Sbjct: 266 PAPEPGSAPQPGSAPRPGSAPRPGAAPQPGAAPWSGATPQPGAAPQPGPASRPG 319
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,484,746,242
Number of Sequences: 23463169
Number of extensions: 404138975
Number of successful extensions: 2342309
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2082
Number of HSP's successfully gapped in prelim test: 11449
Number of HSP's that attempted gapping in prelim test: 2144520
Number of HSP's gapped (non-prelim): 105520
length of query: 386
length of database: 8,064,228,071
effective HSP length: 144
effective length of query: 242
effective length of database: 8,980,499,031
effective search space: 2173280765502
effective search space used: 2173280765502
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 78 (34.7 bits)