BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016630
(386 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P52655|TF2AA_HUMAN Transcription initiation factor IIA subunit 1 OS=Homo sapiens
GN=GTF2A1 PE=1 SV=1
Length = 376
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376
>sp|Q5RCU0|TF2AA_PONAB Transcription initiation factor IIA subunit 1 OS=Pongo abelii
GN=GTF2A1 PE=2 SV=1
Length = 376
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 303 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 360
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 361 NGRDYIFSKAIGDAEW 376
>sp|O08949|TF2AA_RAT Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus
GN=Gtf2a1 PE=2 SV=1
Length = 377
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 304 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 361
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 362 NGRDYIFSKAIGDAEW 377
>sp|Q99PM3|TF2AA_MOUSE Transcription initiation factor IIA subunit 1 OS=Mus musculus
GN=Gtf2a1 PE=2 SV=2
Length = 378
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 54/76 (71%), Gaps = 4/76 (5%)
Query: 313 AAEDD--DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHI 370
AED ++EPLN DD + D + E +T+++V+ Q+DK+ R+K++WK LKDGIM++
Sbjct: 305 GAEDGQVEEEPLNSEDD--VSDEEGQELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNL 362
Query: 371 NNKDILFNKATGEFDF 386
N +D +F+KA G+ ++
Sbjct: 363 NGRDYIFSKAIGDAEW 378
>sp|Q54G80|TF2AA_DICDI Transcription initiation factor IIA subunit 1 OS=Dictyostelium
discoideum GN=gtf2a1 PE=3 SV=1
Length = 310
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 33/43 (76%)
Query: 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEF 384
+H VL Q++KV+R K++ KC KDGIMH+N KD LFNKA GE
Sbjct: 265 EHFVLCQYEKVSRIKNKRKCNFKDGIMHLNGKDTLFNKANGEM 307
>sp|Q9USU9|TOA1_SCHPO Transcription initiation factor IIA large subunit
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=toa1 PE=1 SV=1
Length = 369
Score = 65.9 bits (159), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 47/149 (31%), Positives = 72/149 (48%), Gaps = 20/149 (13%)
Query: 252 ASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVV--------------NEDYNIVNTPAP 297
A+S +PQ DG I D DD S N + + + N I T
Sbjct: 226 ANSRNDVPQTDGAIHD-LDDAGSPSNFESNRFAIAQKADAEIYEVLKKNRILQIDGTIED 284
Query: 298 NDIQASTPAVVTQNDAAEDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKS 357
N+ + P ++A D D+P D DE + ++G ++ Q +VL +DKV K+
Sbjct: 285 NEDEKKPPVDTPSDEAINSDLDDP----DSDEAPETEEGSDIG-QAIVLCLYDKVNHHKN 339
Query: 358 RWKCALKDGIMHINNKDILFNKATGEFDF 386
+WKC +DG++ +N KD LF KA GEF++
Sbjct: 340 KWKCVFRDGVVGVNGKDYLFFKANGEFEW 368
>sp|P52654|TF2AA_DROME Transcription initiation factor IIA subunit 1 OS=Drosophila
melanogaster GN=TfIIA-L PE=1 SV=2
Length = 366
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
Query: 321 PLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKA 380
PLN DD + D D E +T ++++ Q+DK+TR++++WK LKDGIM++ KD +F K+
Sbjct: 303 PLNSEDD--VTDEDSAEMFDTDNVIVCQYDKITRSRNKWKFYLKDGIMNMRGKDYVFQKS 360
Query: 381 TGEFDF 386
G+ ++
Sbjct: 361 NGDAEW 366
>sp|P32773|TOA1_YEAST Transcription initiation factor IIA large subunit OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TOA1 PE=1
SV=1
Length = 286
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 321 PLNENDDDELDDVDQGEELN-TQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNK 379
L+++DDD L + +GEE ++L+L +DKVTRTK+RWKC+LKDG++ IN D F K
Sbjct: 221 ELDDSDDDYL--ISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQK 278
Query: 380 ATGEFDF 386
A E ++
Sbjct: 279 AQVEAEW 285
>sp|Q8R4I4|TF2AY_MOUSE TFIIA-alpha and beta-like factor OS=Mus musculus GN=Gtf2a1l PE=2
SV=2
Length = 468
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T+++++ Q+DK+ R+K+RWK LKDG+M +D +F
Sbjct: 402 EEDPLNSGDD--VSEQDVPDLFDTENVIVCQYDKIHRSKNRWKFYLKDGVMCFGGRDYVF 459
Query: 378 NKATGEFDF 386
KA GE ++
Sbjct: 460 AKAIGEAEW 468
>sp|Q9UNN4|TF2AY_HUMAN TFIIA-alpha and beta-like factor OS=Homo sapiens GN=GTF2A1L PE=2
SV=2
Length = 478
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 318 DDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILF 377
+++PLN DD + + D + +T ++++ Q+DK+ R+K++WK LKDG+M +D +F
Sbjct: 412 EEDPLNSGDD--VSEQDVPDLFDTDNVIVCQYDKIHRSKNKWKFYLKDGVMCFGGRDYVF 469
Query: 378 NKATGEFDF 386
KA G+ ++
Sbjct: 470 AKAIGDAEW 478
>sp|Q8SW23|TOA1_ENCCU Transcription initiation factor IIA large subunit
OS=Encephalitozoon cuniculi (strain GB-M1) GN=TOA1 PE=1
SV=1
Length = 157
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 340 NTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386
+T + ++ + KV +K +WKC K G + I N D +FN A GE ++
Sbjct: 111 STGNCMVCLYVKVNMSKGKWKCTFKQGFISIGNIDFVFNSAQGELEW 157
>sp|Q6A068|CDC5L_MOUSE Cell division cycle 5-like protein OS=Mus musculus GN=Cdc5l PE=1
SV=2
Length = 802
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 42 PAPGGPITPVHDLNVPYEGTEEYETPTAEILFPP-----TPLQTPIQ-----TPLPGSTP 91
P GG TP+H+ + + G TP +++ P TP +TP TP G+TP
Sbjct: 378 PLKGGLNTPLHESD--FSGV----TPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTP 431
Query: 92 LPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPA 126
P + PG TPL D N G +DY P+
Sbjct: 432 KPVTNATPGRTPL---RDKLNINPEDGMADYSDPS 463
>sp|O08837|CDC5L_RAT Cell division cycle 5-like protein OS=Rattus norvegicus GN=Cdc5l
PE=1 SV=2
Length = 802
Score = 36.2 bits (82), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 42 PAPGGPITPVHDLNVPYEGTEEYETPTAEILFPP-----TPLQTPIQ-----TPLPGSTP 91
P GG TP+H+ + + G TP +++ P TP +TP TP G+TP
Sbjct: 378 PLKGGLNTPLHESD--FSGV----TPQRQVVQTPNTVLSTPFRTPSNGAEGLTPRSGTTP 431
Query: 92 LPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPA 126
P + PG TPL D N G +DY P+
Sbjct: 432 KPVTNATPGRTPL---RDKLNINPEDGMADYSDPS 463
>sp|C3PH19|IF2_CORA7 Translation initiation factor IF-2 OS=Corynebacterium aurimucosum
(strain ATCC 700975 / DSM 44827 / CN-1) GN=infB PE=3
SV=1
Length = 905
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 75 PTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTA---DNSTYNIPTGSSDYPTPAS 127
P+ P P PG P PG P PG+TP PG A N GS TP S
Sbjct: 92 PSAAPKPGAAPKPGGAPKPGGAPKPGATPKPGGAPKPGAQRKNTEKGSERAVTPRS 147
>sp|A4GSN8|NUA_ARATH Nuclear-pore anchor OS=Arabidopsis thaliana GN=NUA PE=1 SV=1
Length = 2093
Score = 34.3 bits (77), Expect = 1.9, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query: 75 PTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYNIPTGSSDYPTPASDSGGNTE 134
PT + T + +P + P T +P STPL + +T +P +SD N E
Sbjct: 1635 PTDMVTEPSSGIPAAEP-STMTRVPSSTPLIKSPVATTQQLPKVASD----------NKE 1683
Query: 135 AKSGNGRPSSYMPPPPS------PWMNPRPPLSVDVNVAYVEGR-DEADRGTSHQPLTQ 186
+ + +PS+ P + P VDV++ EG DE + +H+P +Q
Sbjct: 1684 KRLISQKPSTEFRRPSGRRIVRPQLVKPEESPKVDVDMPEAEGTGDEGKQPAAHEPESQ 1742
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,209,938
Number of Sequences: 539616
Number of extensions: 9317692
Number of successful extensions: 53420
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 1241
Number of HSP's that attempted gapping in prelim test: 41326
Number of HSP's gapped (non-prelim): 8086
length of query: 386
length of database: 191,569,459
effective HSP length: 119
effective length of query: 267
effective length of database: 127,355,155
effective search space: 34003826385
effective search space used: 34003826385
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)