Query 016630
Match_columns 386
No_of_seqs 106 out of 151
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 08:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2652 RNA polymerase II tran 100.0 1.7E-65 3.6E-70 494.8 18.5 312 1-386 1-348 (348)
2 PF03153 TFIIA: Transcription 100.0 7.6E-57 1.6E-61 425.0 5.5 309 8-386 1-375 (375)
3 COG5149 TOA1 Transcription ini 99.9 3.8E-23 8.1E-28 195.3 6.2 66 321-386 224-292 (293)
4 COG5149 TOA1 Transcription ini 89.2 0.15 3.2E-06 50.1 0.7 32 1-32 1-52 (293)
5 PF09211 DUF1958: Domain of un 73.8 3.7 7.9E-05 33.1 3.0 29 348-376 23-52 (65)
6 KOG1924 RhoA GTPase effector D 73.5 16 0.00036 41.5 8.8 9 12-20 458-466 (1102)
7 KOG2652 RNA polymerase II tran 65.4 9.3 0.0002 39.2 4.5 61 249-329 241-301 (348)
8 PF09026 CENP-B_dimeris: Centr 61.4 2.7 5.8E-05 36.5 0.0 7 343-349 40-46 (101)
9 COG5013 NarG Nitrate reductase 59.1 6 0.00013 45.3 2.2 27 347-373 41-75 (1227)
10 KOG1999 RNA polymerase II tran 54.5 1.1E+02 0.0023 35.6 10.7 35 31-67 748-783 (1024)
11 PF04584 Pox_A28: Poxvirus A28 48.2 8.7 0.00019 35.1 1.0 16 352-367 65-80 (140)
12 KOG1832 HIV-1 Vpr-binding prot 41.7 14 0.0003 42.8 1.5 11 59-69 928-938 (1516)
13 KOG0943 Predicted ubiquitin-pr 37.4 32 0.0007 41.4 3.5 10 48-57 1380-1389(3015)
14 PF08629 PDE8: PDE8 phosphodie 35.9 26 0.00056 27.5 1.8 30 27-56 10-45 (52)
15 KOG1924 RhoA GTPase effector D 34.8 2.2E+02 0.0047 33.1 9.2 20 87-106 545-565 (1102)
16 KOG0131 Splicing factor 3b, su 32.3 33 0.00072 33.0 2.3 25 7-32 10-36 (203)
17 PF14812 PBP1_TM: Transmembran 32.0 15 0.00033 30.7 0.0 7 353-359 61-67 (81)
18 PRK09719 hypothetical protein; 29.3 16 0.00034 30.7 -0.4 12 345-356 57-68 (89)
19 PF15471 TMEM171: Transmembran 28.7 1E+02 0.0023 31.4 5.1 57 52-114 186-254 (319)
20 PF03153 TFIIA: Transcription 27.7 23 0.0005 34.7 0.4 13 212-224 270-282 (375)
21 KOG0943 Predicted ubiquitin-pr 27.1 35 0.00075 41.1 1.7 9 285-293 1716-1724(3015)
22 KOG3130 Uncharacterized conser 25.9 37 0.0008 36.2 1.5 13 344-356 310-322 (514)
23 PF12139 APS-reductase_C: Aden 25.3 51 0.0011 28.0 2.0 16 359-378 25-40 (83)
24 KOG4672 Uncharacterized conser 23.1 1.7E+02 0.0037 31.5 5.6 9 163-171 403-411 (487)
25 PF05616 Neisseria_TspB: Neiss 21.7 4.8E+02 0.01 28.5 8.6 29 98-126 334-362 (502)
26 PF03115 Astro_capsid: Astrovi 21.6 31 0.00067 38.7 0.0 11 357-367 745-755 (787)
27 KOG1832 HIV-1 Vpr-binding prot 20.8 52 0.0011 38.5 1.5 6 301-306 1387-1392(1516)
28 PTZ00486 apyrase Superfamily; 20.5 94 0.002 32.1 3.1 30 345-374 60-91 (352)
29 PF10382 DUF2439: Protein of u 20.3 1.2E+02 0.0026 24.7 3.1 31 345-379 4-38 (83)
30 cd06477 ACD_HspB3_Like Alpha c 20.1 58 0.0013 26.5 1.3 32 343-374 46-83 (83)
No 1
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=100.00 E-value=1.7e-65 Score=494.77 Aligned_cols=312 Identities=35% Similarity=0.550 Sum_probs=263.5
Q ss_pred CCcc-ccceEEeehHHHHHHH--------------------HHHHhhhhccee---eecCCCCCCCCCCCCCCcccccCC
Q 016630 1 MATS-ATGMVYIRVIEDVISK--------------------IWEMKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNV 56 (386)
Q Consensus 1 ma~s-~~s~vyi~viedvi~k--------------------~we~km~q~g~i---i~r~~a~~~~~p~gp~tpvhDLNv 56 (386)
||+. +++.||.|||||||++ |||.||||+||. ++|.+++.+ .+|+. .| ||
T Consensus 1 ~~~~~~v~kvY~~VIeDVI~~vRe~F~~~GiDeqvL~eLk~lWe~Kl~qs~~~~~~~d~~s~~~p-~~~~q---~~--~~ 74 (348)
T KOG2652|consen 1 MASTNTVSKVYESVIEDVINNVREDFLENGIDEQVLSELKNLWETKLIQSGVATFPWDRESNQRP-PPGVQ---LH--HV 74 (348)
T ss_pred CCcccchHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhcccccCcccccccCC-CCccc---cc--Cc
Confidence 4444 8999999999999999 999999999999 999999987 55663 45 89
Q ss_pred CCCC-cccccCCCceeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCcccCCCCCCCCC--CCCCCCCCC
Q 016630 57 PYEG-TEEYETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPG-TADNSTYNIPTGSSDYP--TPASDSGGN 132 (386)
Q Consensus 57 Pyeg-tEEyetPtaemLFpPtPlqtp~qTPlp~~~~~~~~~~~~~~~~~~g-~~~~~myniptg~s~yp--~~~~d~g~~ 132 (386)
||++ |.+|+||+ +||.+++|++..++|| | .+..+|||||.+.+.|+ .|......|
T Consensus 75 ~~~~~~~~~~~Pa---~~~~~~q~~~~~~~l~------------------~~~~~~s~~~i~~~~t~~~~~~P~~q~~~N 133 (348)
T KOG2652|consen 75 PLQSATANLATPA---VFPGAPQQTPAGVPLP------------------GLSGHLSKANIPLPSTATNGQHPSQQVNVN 133 (348)
T ss_pred ccccccccccCCc---cccccccccCcCccCc------------------cccccccccCccccccccCCcCcccccccc
Confidence 9999 79999999 8999999999999999 7 67899999999999998 677776666
Q ss_pred CCCcCCCCCCCCCCCCCCCCCCCCCCCcccceeeeeecCc-----cccccCCCCCCCccceecccccccccccCCcCCCC
Q 016630 133 TEAKSGNGRPSSYMPPPPSPWMNPRPPLSVDVNVAYVEGR-----DEADRGTSHQPLTQDFFTMSAGKRKREDFPAQYHN 207 (386)
Q Consensus 133 ~d~k~~~grps~ym~~~pspw~~~~~~l~vdVnvAYvegr-----de~drg~s~q~lTqdfftmSSGKRKRdD~~~qy~~ 207 (386)
. -++.|+|+| .|.|.++|+. ++ ||.+| ..+.+|..+++.||+-|.-++| |+.+.-.+|.+
T Consensus 134 ~------~q~~p~~~p-~s~~~~~q~s----~~--~v~~~~~ip~~~p~~~~~~~~~tqq~~~~~~g--~~pq~~~~~~~ 198 (348)
T KOG2652|consen 134 S------TQPVPALSP-WSLQLNTQKS----QQ--TVLQQSAIPPSGPVDGNHNQPVTQQILVPPGG--KSPQSSFHYIN 198 (348)
T ss_pred c------cCCCcCcCc-cccccccccc----cc--cccccccccccCcccccccCccccccccCCCC--CCcccccceec
Confidence 6 488899999 9999985554 33 99999 8999999999999999988888 88888888888
Q ss_pred CCcccccCCCCCCCcccceeeeecCCCCccccccccchhhhhhhhccccccCCCCCCCCCCCCCcCCCCcccccCCcccc
Q 016630 208 GGYNIPQQDGAGDAMSEIFELEVSEFPGRQDSVTTANREIFANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNE 287 (386)
Q Consensus 208 gg~~iPQQDGa~D~~~e~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~IPQlDGp~pdpydd~~~tpniy~yqGv~~E 287 (386)
++ |||++|+++...+... ..+.++....|...+.+.....+|.|+||++.. ++.+++|-+++ .|
T Consensus 199 ~~--~~q~~~s~nd~~~~~~-------~~~a~~~~~~~~~~~~~~s~~~~i~qv~~~~~~-----~~Q~Dg~~~~~--eE 262 (348)
T KOG2652|consen 199 LN--IPQVDGSENDVEQIDG-------TDLAIHILKDRMVPRDSVSEKDKIAQVDLSLRK-----ILQVDGTGDTS--EE 262 (348)
T ss_pred cC--Cccccccccccccccc-------ccccccccccccccccccchhhhhhhhcccccc-----eeecccccccc--cc
Confidence 88 8999999999888765 236678888888888888899999999999984 78899999988 56
Q ss_pred cccccCCCCCCCcccCCCcccccCCcCCCCCCCCCCCCCCC--CCcccccccCC-CCCCEEEEEEeeeeecCCceeEEee
Q 016630 288 DYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDD--ELDDVDQGEEL-NTQHLVLAQFDKVTRTKSRWKCALK 364 (386)
Q Consensus 288 dyn~~~~~ap~e~~ast~~~~~~~~~~de~dEdpLNsdDDd--d~dD~Dd~Ed~-~t~NvVLCqYDKV~R~KNKWKc~LK 364 (386)
|=||-. ..+ ...+++|+.+|+|||| ++++++.++|. +|+||||||||||+|+||||||+||
T Consensus 263 ~e~Eee---------------~~~-~~~~~dee~~n~Dd~D~~EeeplnsedDvsdt~nvVvCqyDKV~RsKnKWKc~LK 326 (348)
T KOG2652|consen 263 DENEEE---------------DDD-PDPDEDEELGNSDDDDGVEEEPLNSEDDVSDTQNVVVCQYDKVNRSKNKWKCYLK 326 (348)
T ss_pred cccccc---------------ccC-cccchhhhcccccccCccccccccCcccccccceeEEEeeeeeccccceeeEEee
Confidence 444411 111 1133567777877755 56666665566 4899999999999999999999999
Q ss_pred cceeEECCeeeeeecccccccC
Q 016630 365 DGIMHINNKDILFNKATGEFDF 386 (386)
Q Consensus 365 DGIm~INGKDyvF~KatGEfEw 386 (386)
|||||||||||||+||+|||||
T Consensus 327 DGIM~ingkDY~F~KA~GeaEW 348 (348)
T KOG2652|consen 327 DGVMHINGKDYVFQKAQGEAEW 348 (348)
T ss_pred cceEEeCCceeEeeecccccCC
Confidence 9999999999999999999999
No 2
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=100.00 E-value=7.6e-57 Score=425.01 Aligned_cols=309 Identities=34% Similarity=0.509 Sum_probs=71.3
Q ss_pred eEEeehHHHHHHH--------------------HHHHhhhhccee---eecCCCCCCCCCCCCCCcccccCCCCCCcccc
Q 016630 8 MVYIRVIEDVISK--------------------IWEMKMIQAGVI---IDRTSAPKQPAPGGPITPVHDLNVPYEGTEEY 64 (386)
Q Consensus 8 ~vyi~viedvi~k--------------------~we~km~q~g~i---i~r~~a~~~~~p~gp~tpvhDLNvPyegtEEy 64 (386)
.||.+||||||++ |||.||+|+||+ .++..++.++.+..|..+
T Consensus 1 kvY~~VI~dVI~~vr~dF~~~Gvde~vL~eLk~~We~KL~qs~v~~~~~d~~~~~~~~~~~~p~~~-------------- 66 (375)
T PF03153_consen 1 KVYESVIDDVINNVREDFEEEGVDEQVLQELKQLWESKLSQSGVADFPWDPPPAPPPPPPQQPQPP-------------- 66 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHH-SS--TTGGGG---------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCccCCCCcccCCCcccccCCCCc--------------
Confidence 4899999999999 999999999999 555555444233333222
Q ss_pred cCCCceeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCcccCCCCCCCCCCCCCCCCCCCCCcCCCCCCC
Q 016630 65 ETPTAEILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPG-TADNSTYNIPTGSSDYPTPASDSGGNTEAKSGNGRPS 143 (386)
Q Consensus 65 etPtaemLFpPtPlqtp~qTPlp~~~~~~~~~~~~~~~~~~g-~~~~~myniptg~s~yp~~~~d~g~~~d~k~~~grps 143 (386)
+.||+++++++ +++++ . ...+.++++|++.+.+..+......+. +. +++.
T Consensus 67 ------~~~~~~~~~~~-~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~ 117 (375)
T PF03153_consen 67 ------QSTPPSPSQQP-QAPQA------------------IPQGQSQQQNQPSSMSNSNPPATFSTPPG--QV--PAPP 117 (375)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------ccCCCCCCCCc-ccccc------------------cCCCCccccccccccCcCCCcccccCCCc--cc--CCCC
Confidence 78888888888 77776 3 455677888888777633322221111 33 5788
Q ss_pred CCCCCCCCCCCCCCCCcccceeeeeecCccccccCCCCCCCccceecccccccc-----------cccCCcCCCCCCc-c
Q 016630 144 SYMPPPPSPWMNPRPPLSVDVNVAYVEGRDEADRGTSHQPLTQDFFTMSAGKRK-----------REDFPAQYHNGGY-N 211 (386)
Q Consensus 144 ~ym~~~pspw~~~~~~l~vdVnvAYvegrde~drg~s~q~lTqdfftmSSGKRK-----------RdD~~~qy~~gg~-~ 211 (386)
++|++ |..|++.+.|..+..+.++..++..+.+....+++++.|+.+++.+++ +.....++..|+. .
T Consensus 118 ~iq~~-pG~~~~~~~P~~~~~~~~~~~~~~~~aqq~~~qq~~q~~g~~aa~q~~~~~qq~q~~~~~~~~~~~~~~~~~~~ 196 (375)
T PF03153_consen 118 TIQQP-PGQQYQVQVPSMNNQPPGNQQIAQQPAQQRAAQQLQQPYGQPAAQQISQQQQQQQPQQQQQQQQQQQQPGQQVQ 196 (375)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccCC-CccccCcccCCccCCcccccccccccccccccccccccccccccccCCccccccccccccccccccccCCCccC
Confidence 88888 999999999998999999999999999999999999999999999999 5666666766665 3
Q ss_pred cccCCCCCCCcc----cceeeeec-CC--------------------CCccccccccchhhhh--hhhccccccCCCCCC
Q 016630 212 IPQQDGAGDAMS----EIFELEVS-EF--------------------PGRQDSVTTANREIFA--NLASSSVKIPQLDGP 264 (386)
Q Consensus 212 iPQQDGa~D~~~----e~~~~e~~-~~--------------------~~~~~~~~~~~~~~~~--~~~~~~~~IPQlDGp 264 (386)
++|.||+++... +..+.... .. ...+............ ...+...+|+|+||+
T Consensus 197 ~~Qtdga~d~~~~~~~~~~~~~~~~~~~~~d~~L~~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Q~DG~ 276 (375)
T PF03153_consen 197 QQQTDGAGDSESNSQPRRLEAAVPLQRNEIDQVLRSQIENRAMQLEGGGLMSPLSQASKASKQNKSSNSESSRIPQLDGA 276 (375)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccCCCCcccchhccccccccccccccccccccccccccccccchhhccchhhcccccccccccccccccccccccCC
Confidence 588999999852 11111111 00 0000000000000000 011112469999999
Q ss_pred CCCCCCCcCCCCcccccCCcccccccccCCCCCCCcccCCCcccccCCcCCCCCCCCCCCCCCCCCc---ccccccCCCC
Q 016630 265 IPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDDELD---DVDQGEELNT 341 (386)
Q Consensus 265 ~pdpydd~~~tpniy~yqGv~~Edyn~~~~~ap~e~~ast~~~~~~~~~~de~dEdpLNsdDDdd~d---D~Dd~Ed~~t 341 (386)
.++..++.+. +....+||+.+ .+.++++++.+|||+|+++| |+|.++++++
T Consensus 277 ~d~~~~e~~~------~~~~~d~d~~~--------------------~~~~~~~~~~~~~~~~~~~dd~~~~~~~~~~~~ 330 (375)
T PF03153_consen 277 GDDSDDEEDD------DDDDDDEDDED--------------------KDKDEDDEDAINSDLDDSDDDVSDEDDEDDFDT 330 (375)
T ss_dssp ---------------------------------------------------------------------B-------STT
T ss_pred CCCccccccc------ccccccccccc--------------------ccccccccccccCCcCCccccccccccccccCc
Confidence 9886654433 34456666610 01112334445555433333 3344456799
Q ss_pred CCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630 342 QHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386 (386)
Q Consensus 342 ~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 386 (386)
+||||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus 331 ~~~~~c~~~kv~r~k~~wk~~lk~g~~~~~~~d~~f~~~~ge~~w 375 (375)
T PF03153_consen 331 DNVVLCQYDKVTRVKNKWKCTLKDGIMHINGKDYVFQKATGEFEW 375 (375)
T ss_dssp S-EEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEE-
T ss_pred CCEEEEEeeccccccceeEEEeeeeEEEECCeEEEEeeeeeeecC
Confidence 999999999999999999999999999999999999999999999
No 3
>COG5149 TOA1 Transcription initiation factor IIA, large chain [Transcription]
Probab=99.88 E-value=3.8e-23 Score=195.32 Aligned_cols=66 Identities=38% Similarity=0.685 Sum_probs=52.9
Q ss_pred CCCCCCCCCCccccccc---CCCCCCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630 321 PLNENDDDELDDVDQGE---ELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386 (386)
Q Consensus 321 pLNsdDDdd~dD~Dd~E---d~~t~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 386 (386)
..+||.||+++|.-+.+ .....|+|||+||||+|+|+||||+|||||+.|||+||+|+||+|||||
T Consensus 224 ~~~sdlddsD~d~~~se~egt~~~~n~mlCLYdKVn~~K~kWKCtfkdGvV~In~~Dy~F~kAqgE~EW 292 (293)
T COG5149 224 GMFSDLDDSDVDSGDSEIEGTKGSTNCMLCLYDKVNMSKGKWKCTFKDGVVSINNIDYVFNKAQGELEW 292 (293)
T ss_pred ccccccCCccccccccccccCCCCceEEEEEeeecccccceeeEEeecceEEecCceeEEeeccceEee
Confidence 45555444333332222 2345699999999999999999999999999999999999999999999
No 4
>COG5149 TOA1 Transcription initiation factor IIA, large chain [Transcription]
Probab=89.23 E-value=0.15 Score=50.13 Aligned_cols=32 Identities=41% Similarity=0.725 Sum_probs=27.8
Q ss_pred CCccccceEEeehHHHHHHH--------------------HHHHhhhhccee
Q 016630 1 MATSATGMVYIRVIEDVISK--------------------IWEMKMIQAGVI 32 (386)
Q Consensus 1 ma~s~~s~vyi~viedvi~k--------------------~we~km~q~g~i 32 (386)
|.-|.++.||-|||+|||+. ||..|+..--|-
T Consensus 1 msns~~~~vy~~vi~~vi~~~r~dfe~~gvdd~tlrelqnlwq~kl~~t~va 52 (293)
T COG5149 1 MSNSIVGEVYHHVILDVIANSRSDFEENGVDDATLRELQNLWQSKLVATDVA 52 (293)
T ss_pred CCcchhhHHHHHHHHHHHHHhhhHHHhcCccHHHHHHHHHHHHHhhhhheee
Confidence 66678999999999999998 999999876654
No 5
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=73.84 E-value=3.7 Score=33.08 Aligned_cols=29 Identities=31% Similarity=0.597 Sum_probs=21.3
Q ss_pred EEeeeeecCCceeEEeecceeEE-CCeeee
Q 016630 348 QFDKVTRTKSRWKCALKDGIMHI-NNKDIL 376 (386)
Q Consensus 348 qYDKV~R~KNKWKc~LKDGIm~I-NGKDyv 376 (386)
+||=|-+-+++|++.++||.++| +++.|+
T Consensus 23 lYd~VpK~~~~~~~~v~dg~v~vd~~r~fl 52 (65)
T PF09211_consen 23 LYDVVPKGKKPYKLKVKDGKVHVDYGRQFL 52 (65)
T ss_dssp EEEEEETT--GSEEEEETTEEEEE-S--BS
T ss_pred hhhhccCCCccceEEEeCCEEEEeCCcccC
Confidence 68888899899999999999999 566654
No 6
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=73.52 E-value=16 Score=41.47 Aligned_cols=9 Identities=22% Similarity=0.660 Sum_probs=5.6
Q ss_pred ehHHHHHHH
Q 016630 12 RVIEDVISK 20 (386)
Q Consensus 12 ~viedvi~k 20 (386)
+.|++.|+|
T Consensus 458 ~liD~~vdk 466 (1102)
T KOG1924|consen 458 ELIDKMVDK 466 (1102)
T ss_pred HHHHHHHHH
Confidence 356666666
No 7
>KOG2652 consensus RNA polymerase II transcription initiation factor TFIIA, large chain [Transcription]
Probab=65.36 E-value=9.3 Score=39.16 Aligned_cols=61 Identities=28% Similarity=0.304 Sum_probs=33.9
Q ss_pred hhhhccccccCCCCCCCCCCCCCcCCCCcccccCCcccccccccCCCCCCCcccCCCcccccCCcCCCCCCCCCCCCCCC
Q 016630 249 ANLASSSVKIPQLDGPIPDPYDDVLSTPNIYNYQGVVNEDYNIVNTPAPNDIQASTPAVVTQNDAAEDDDDEPLNENDDD 328 (386)
Q Consensus 249 ~~~~~~~~~IPQlDGp~pdpydd~~~tpniy~yqGv~~Edyn~~~~~ap~e~~ast~~~~~~~~~~de~dEdpLNsdDDd 328 (386)
+++..+-.+|-|+||-...= -..+|= .||++...+.+ + .....+++|.+|||+|||+||.
T Consensus 241 ~qv~~~~~~~~Q~Dg~~~~~----eE~e~E-------ee~~~~~~~~d--e-------e~~n~Dd~D~~EeeplnsedDv 300 (348)
T KOG2652|consen 241 AQVDLSLRKILQVDGTGDTS----EEDENE-------EEDDDPDPDED--E-------ELGNSDDDDGVEEEPLNSEDDV 300 (348)
T ss_pred hhhcccccceeecccccccc----cccccc-------ccccCcccchh--h-------hcccccccCccccccccCcccc
Confidence 45555556699999966542 122332 55565555443 1 1222233333489999998865
Q ss_pred C
Q 016630 329 E 329 (386)
Q Consensus 329 d 329 (386)
.
T Consensus 301 s 301 (348)
T KOG2652|consen 301 S 301 (348)
T ss_pred c
Confidence 3
No 8
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box. CENP-B may organise arrays of centromere satellite DNA into a higher order structure, which then directs centromere formation and kinetochore assembly in mammalian chromosomes. The CENP-B dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation []. ; GO: 0003677 DNA binding, 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 1UFI_A.
Probab=61.37 E-value=2.7 Score=36.52 Aligned_cols=7 Identities=14% Similarity=0.534 Sum_probs=0.4
Q ss_pred CEEEEEE
Q 016630 343 HLVLAQF 349 (386)
Q Consensus 343 NvVLCqY 349 (386)
-+.+|-|
T Consensus 40 e~p~p~f 46 (101)
T PF09026_consen 40 EVPVPEF 46 (101)
T ss_dssp ------H
T ss_pred cccchhH
Confidence 3455544
No 9
>COG5013 NarG Nitrate reductase alpha subunit [Energy production and conversion]
Probab=59.10 E-value=6 Score=45.27 Aligned_cols=27 Identities=33% Similarity=0.624 Sum_probs=23.4
Q ss_pred EEEeeeeecC--------CceeEEeecceeEECCe
Q 016630 347 AQFDKVTRTK--------SRWKCALKDGIMHINNK 373 (386)
Q Consensus 347 CqYDKV~R~K--------NKWKc~LKDGIm~INGK 373 (386)
-|||||-|+- ..||+..|||||+-..+
T Consensus 41 WqhDKvVRSTHGVNCTGSCSWkIYVKdGiITWEtQ 75 (1227)
T COG5013 41 WQHDKVVRSTHGVNCTGSCSWKIYVKNGLITWETQ 75 (1227)
T ss_pred hcccceeeccCCccccceeeEEEEEeCCEEEEeec
Confidence 5899999975 57999999999997765
No 10
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=54.51 E-value=1.1e+02 Score=35.64 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=24.0
Q ss_pred eeeecCCCCCCCC-CCCCCCcccccCCCCCCcccccCC
Q 016630 31 VIIDRTSAPKQPA-PGGPITPVHDLNVPYEGTEEYETP 67 (386)
Q Consensus 31 ~ii~r~~a~~~~~-p~gp~tpvhDLNvPyegtEEyetP 67 (386)
.++.|-.+..+.- -.|+.||.|+-|+|--| -+-||
T Consensus 748 ~~~~~~g~~~~~~~~~Gs~tp~~~s~tpl~~--~s~tp 783 (1024)
T KOG1999|consen 748 ERTPGYGRVTPARYGMGSSTPMYGSNTPLWG--GSRTP 783 (1024)
T ss_pred cccccccccCccccCCCCcCccCCCCCCCCC--cccCc
Confidence 3455544555422 37889999999999988 36666
No 11
>PF04584 Pox_A28: Poxvirus A28 family; InterPro: IPR007664 The poxvirus A28 protein is expressed at late times during the virus replication cycle and is a membrane component of the intracellular mature virion. Repression of A28 inhibits cell-to-cell spread, suggesting that all poxviruses use a common A28-dependent mechanism of cell penetration []. An N-terminal hydrophobic sequence, present in all poxvirus A28 orthologues, anchors the protein in the virion surface membrane so that most of it is exposed to the cytoplasm [].; GO: 0016032 viral reproduction, 0019031 viral envelope
Probab=48.19 E-value=8.7 Score=35.10 Aligned_cols=16 Identities=25% Similarity=0.777 Sum_probs=12.9
Q ss_pred eeecCCceeEEeecce
Q 016630 352 VTRTKSRWKCALKDGI 367 (386)
Q Consensus 352 V~R~KNKWKc~LKDGI 367 (386)
|.-+|.||||++.+++
T Consensus 65 ~~DvkqKWRCv~~~~~ 80 (140)
T PF04584_consen 65 VYDVKQKWRCVKYNNV 80 (140)
T ss_pred ccChhhceEEEeeCCe
Confidence 4557999999998865
No 12
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=41.70 E-value=14 Score=42.81 Aligned_cols=11 Identities=27% Similarity=0.175 Sum_probs=4.7
Q ss_pred CCcccccCCCc
Q 016630 59 EGTEEYETPTA 69 (386)
Q Consensus 59 egtEEyetPta 69 (386)
.+|-|-..++|
T Consensus 928 ~~~Se~~a~~a 938 (1516)
T KOG1832|consen 928 ADTSETAAELA 938 (1516)
T ss_pred cccccccchhc
Confidence 34555333443
No 13
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=37.40 E-value=32 Score=41.36 Aligned_cols=10 Identities=50% Similarity=0.723 Sum_probs=7.4
Q ss_pred CCcccccCCC
Q 016630 48 ITPVHDLNVP 57 (386)
Q Consensus 48 ~tpvhDLNvP 57 (386)
-+|-||||-|
T Consensus 1380 ~~PdHdLePP 1389 (3015)
T KOG0943|consen 1380 DMPDHDLEPP 1389 (3015)
T ss_pred CCCccCCCCc
Confidence 4588888866
No 14
>PF08629 PDE8: PDE8 phosphodiesterase; InterPro: IPR013938 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP. They are divided into 11 families. They regulate the localisation, duration and amplitude of cyclic nucleotide signalling within subcellular domains. PDEs are therefore important for signal transduction. PDE enzymes are often targets for pharmacological inhibition due to their unique tissue distribution, structural properties, and functional properties. Inhibitors include: Roflumilast for chronic obstructive pulmonary disease and asthma [], Sildenafil for erectile dysfunction [] and Cilostazol for peripheral arterial occlusive disease [], amongst others. Retinal 3',5'-cGMP phosphodiesterase is located in photoreceptor outer segments: it is light activated, playing a pivotal role in signal transduction. In rod cells, PDE is oligomeric, comprising an alpha-, a beta- and 2 gamma-subunits, while in cones, PDE is a homodimer of alpha chains, which are associated with several smaller subunits. Both rod and cone PDEs catalyse the hydrolysis of cAMP or cGMP to the corresponding nucleoside 5' monophosphates, both enzymes also binding cGMP with high affinity. The cGMP-binding sites are located in the N-terminal half of the protein sequence, while the catalytic core resides in the C-terminal portion. This region is found at the N terminus of members of PDE8 phosphodiesterase family []. Phosphodiesterase 8 (PDE8) regulates chemotaxis of activated lymphocytes [].
Probab=35.89 E-value=26 Score=27.47 Aligned_cols=30 Identities=33% Similarity=0.649 Sum_probs=20.7
Q ss_pred hhcceeeec----CCCCCCC--CCCCCCCcccccCC
Q 016630 27 IQAGVIIDR----TSAPKQP--APGGPITPVHDLNV 56 (386)
Q Consensus 27 ~q~g~ii~r----~~a~~~~--~p~gp~tpvhDLNv 56 (386)
-|.|||+-| ++.+.|- +.-||.+|+|-|-|
T Consensus 10 SqSgVvy~res~es~sP~qTtt~SQg~~~pl~GLFi 45 (52)
T PF08629_consen 10 SQSGVVYCRESDESNSPRQTTTVSQGPAAPLPGLFI 45 (52)
T ss_pred cccceEEEeccccCCCCCcceeeecCCCCCccceEE
Confidence 489999544 4444442 34789999998865
No 15
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=34.84 E-value=2.2e+02 Score=33.11 Aligned_cols=20 Identities=50% Similarity=1.027 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCC-CCCCCC
Q 016630 87 PGSTPLPGSTPLPG-STPLPG 106 (386)
Q Consensus 87 p~~~~~~~~~~~~~-~~~~~g 106 (386)
|+..||||..++|- ..||||
T Consensus 545 PppPPlpggag~PPPPpplPg 565 (1102)
T KOG1924|consen 545 PPPPPLPGGAGPPPPPPPLPG 565 (1102)
T ss_pred CCCCCCCCCCCCCccCCCCCc
Confidence 33445555544332 334555
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=32.34 E-value=33 Score=33.05 Aligned_cols=25 Identities=28% Similarity=0.724 Sum_probs=21.8
Q ss_pred ceEEeehHHHHHHH--HHHHhhhhccee
Q 016630 7 GMVYIRVIEDVISK--IWEMKMIQAGVI 32 (386)
Q Consensus 7 s~vyi~viedvi~k--~we~km~q~g~i 32 (386)
.+||+--|+.-+.+ |||+ |+|||-+
T Consensus 10 ~tiyvgnld~kvs~~~l~EL-~iqagpV 36 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYEL-FIQAGPV 36 (203)
T ss_pred ceEEEecCCHHHHHHHHHHH-HHhcCce
Confidence 57999999999987 9998 8999944
No 17
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=31.96 E-value=15 Score=30.71 Aligned_cols=7 Identities=57% Similarity=1.275 Sum_probs=0.0
Q ss_pred eecCCce
Q 016630 353 TRTKSRW 359 (386)
Q Consensus 353 ~R~KNKW 359 (386)
.|.|-+|
T Consensus 61 ~rkKrrw 67 (81)
T PF14812_consen 61 PRKKRRW 67 (81)
T ss_dssp -------
T ss_pred ccccchh
Confidence 3444444
No 18
>PRK09719 hypothetical protein; Provisional
Probab=29.28 E-value=16 Score=30.70 Aligned_cols=12 Identities=33% Similarity=0.473 Sum_probs=9.8
Q ss_pred EEEEEeeeeecC
Q 016630 345 VLAQFDKVTRTK 356 (386)
Q Consensus 345 VLCqYDKV~R~K 356 (386)
--|||||.+|+-
T Consensus 57 wrcqydklhrvp 68 (89)
T PRK09719 57 WRCQYDKLHRVP 68 (89)
T ss_pred hhcchhhhhccc
Confidence 469999999875
No 19
>PF15471 TMEM171: Transmembrane protein family 171
Probab=28.70 E-value=1e+02 Score=31.41 Aligned_cols=57 Identities=30% Similarity=0.522 Sum_probs=31.9
Q ss_pred cccCCCCCCc--ccccCCCce----------eccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 016630 52 HDLNVPYEGT--EEYETPTAE----------ILFPPTPLQTPIQTPLPGSTPLPGSTPLPGSTPLPGTADNSTYN 114 (386)
Q Consensus 52 hDLNvPyegt--EEyetPtae----------mLFpPtPlqtp~qTPlp~~~~~~~~~~~~~~~~~~g~~~~~myn 114 (386)
|.||+-=+.+ ||=.|++-| |+|||-|-+-=...+. ++-|+-||+..||-..|..-|+
T Consensus 186 ~nln~~qd~se~Ee~~~qs~Ep~qVTVGDaViiFPPPPPPYF~ess~------~a~t~~~~~~~l~~senPPsY~ 254 (319)
T PF15471_consen 186 NNLNGSQDASESEEGQTQSTEPVQVTVGDAVIIFPPPPPPYFPESSA------SAVTRSPGANSLPPSENPPSYY 254 (319)
T ss_pred cCCCcccCccccccCCCCCCCCEEEEecCEEEEcCCccCCCCCCCCc------ccccCCCCCCCCCCCCCCCCcc
Confidence 6788877777 454577654 8999955332222222 2344555555555544444444
No 20
>PF03153 TFIIA: Transcription factor IIA, alpha/beta subunit; InterPro: IPR004855 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the precursor that yields both the alpha and beta subunits of TFIIA. The TFIIA heterotrimer is an essential general transcription initiation factor for the expression of genes transcribed by RNA polymerase II []. ; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_B 1YTF_B 1RM1_C 1NH2_B.
Probab=27.72 E-value=23 Score=34.65 Aligned_cols=13 Identities=62% Similarity=1.004 Sum_probs=0.0
Q ss_pred cccCCCCCCCccc
Q 016630 212 IPQQDGAGDAMSE 224 (386)
Q Consensus 212 iPQQDGa~D~~~e 224 (386)
|+|-||++|...+
T Consensus 270 ~~Q~DG~~d~~~~ 282 (375)
T PF03153_consen 270 IPQLDGAGDDSDD 282 (375)
T ss_dssp -------------
T ss_pred cccccCCCCCccc
Confidence 7888888876655
No 21
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=27.12 E-value=35 Score=41.11 Aligned_cols=9 Identities=22% Similarity=0.158 Sum_probs=4.0
Q ss_pred ccccccccC
Q 016630 285 VNEDYNIVN 293 (386)
Q Consensus 285 ~~Edyn~~~ 293 (386)
.++|..+.+
T Consensus 1716 tnaDnEEre 1724 (3015)
T KOG0943|consen 1716 TNADNEERE 1724 (3015)
T ss_pred cccchhhhc
Confidence 455544333
No 22
>KOG3130 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.89 E-value=37 Score=36.16 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=7.0
Q ss_pred EEEEEEeeeeecC
Q 016630 344 LVLAQFDKVTRTK 356 (386)
Q Consensus 344 vVLCqYDKV~R~K 356 (386)
+-+.+-+|-+|+|
T Consensus 310 i~f~~~~ep~~~~ 322 (514)
T KOG3130|consen 310 IYFSHTVEPKRVR 322 (514)
T ss_pred cccccccCcccce
Confidence 4466666644443
No 23
>PF12139 APS-reductase_C: Adenosine-5'-phosphosulfate reductase beta subunit; InterPro: IPR022738 This domain is found in bacteria and archaea and is typically between 112 to 142 amino acids in length. It is found in association with PF00037 from PFAM, and has a conserved FPIRTT sequence motif. The whole beta subunit has the enzymic properties of 1.8.99.2 from EC. ; PDB: 1JNZ_B 2FJE_D 2FJD_B 1JNR_D 2FJB_B 2FJA_B 3GYX_J.
Probab=25.28 E-value=51 Score=28.00 Aligned_cols=16 Identities=25% Similarity=0.733 Sum_probs=11.8
Q ss_pred eeEEeecceeEECCeeeeee
Q 016630 359 WKCALKDGIMHINNKDILFN 378 (386)
Q Consensus 359 WKc~LKDGIm~INGKDyvF~ 378 (386)
|+|+|+||.+ |+|.|-
T Consensus 25 WtikFRnG~~----KrFkfP 40 (83)
T PF12139_consen 25 WTIKFRNGTV----KRFKFP 40 (83)
T ss_dssp EEEE-TTS-E----EEEEEE
T ss_pred EEEEecCCce----eeeecc
Confidence 9999999965 678774
No 24
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=23.09 E-value=1.7e+02 Score=31.45 Aligned_cols=9 Identities=33% Similarity=0.475 Sum_probs=7.0
Q ss_pred ceeeeeecC
Q 016630 163 DVNVAYVEG 171 (386)
Q Consensus 163 dVnvAYveg 171 (386)
|.++|.+|-
T Consensus 403 d~s~a~ies 411 (487)
T KOG4672|consen 403 DMSRATIES 411 (487)
T ss_pred Ccccccccc
Confidence 668888887
No 25
>PF05616 Neisseria_TspB: Neisseria meningitidis TspB protein; InterPro: IPR008708 This family consists mainly of Neisseria meningitidis TspB virulence factor proteins.
Probab=21.73 E-value=4.8e+02 Score=28.48 Aligned_cols=29 Identities=34% Similarity=0.485 Sum_probs=16.6
Q ss_pred CCCCCCCCCCCCCCcccCCCCCCCCCCCC
Q 016630 98 LPGSTPLPGTADNSTYNIPTGSSDYPTPA 126 (386)
Q Consensus 98 ~~~~~~~~g~~~~~myniptg~s~yp~~~ 126 (386)
.++.++-|++.++..+|=.|.|...|.|.
T Consensus 334 ~p~P~~NP~~~pnPn~nPgT~PnP~p~Pd 362 (502)
T PF05616_consen 334 NPGPNTNPGTNPNPNENPGTNPNPDPDPD 362 (502)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 33455555655555666666666555554
No 26
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=21.60 E-value=31 Score=38.68 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=0.0
Q ss_pred CceeEEeecce
Q 016630 357 SRWKCALKDGI 367 (386)
Q Consensus 357 NKWKc~LKDGI 367 (386)
+-..+.|-||+
T Consensus 745 ~vy~d~LaDGl 755 (787)
T PF03115_consen 745 NVYMDALADGL 755 (787)
T ss_dssp -----------
T ss_pred hhHHhhhccCC
Confidence 44555555553
No 27
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.81 E-value=52 Score=38.48 Aligned_cols=6 Identities=67% Similarity=0.440 Sum_probs=2.5
Q ss_pred ccCCCc
Q 016630 301 QASTPA 306 (386)
Q Consensus 301 ~ast~~ 306 (386)
+.||-+
T Consensus 1387 q~sT~~ 1392 (1516)
T KOG1832|consen 1387 QFSTSA 1392 (1516)
T ss_pred hhhhhh
Confidence 344433
No 28
>PTZ00486 apyrase Superfamily; Provisional
Probab=20.49 E-value=94 Score=32.14 Aligned_cols=30 Identities=17% Similarity=0.529 Sum_probs=20.7
Q ss_pred EEEEEeeeee--cCCceeEEeecceeEECCee
Q 016630 345 VLAQFDKVTR--TKSRWKCALKDGIMHINNKD 374 (386)
Q Consensus 345 VLCqYDKV~R--~KNKWKc~LKDGIm~INGKD 374 (386)
|++=-||-.| .+++|++.||-|.+..+++.
T Consensus 60 iIaDlD~~S~~~~~~~w~S~~~~G~L~~~~~~ 91 (352)
T PTZ00486 60 LVADLDKASKDKEGKKWRSKVIKGTIFRQGNG 91 (352)
T ss_pred EEecCchhccccCCCceEEEEEEEEEEEcCCC
Confidence 3444455555 47889999999988776653
No 29
>PF10382 DUF2439: Protein of unknown function (DUF2439); InterPro: IPR018838 This domain is found at the N-terminal of proteins implicated in telomere maintenance in Saccharomyces cerevisiae (Baker's yeast) [] and in meiotic chromosome segregation in Schizosaccharomyces pombe (Fission yeast) [].
Probab=20.27 E-value=1.2e+02 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.560 Sum_probs=21.2
Q ss_pred EEEEEeeeeecCCc-eeEEeecceeEEC---Ceeeeeec
Q 016630 345 VLAQFDKVTRTKSR-WKCALKDGIMHIN---NKDILFNK 379 (386)
Q Consensus 345 VLCqYDKV~R~KNK-WKc~LKDGIm~IN---GKDyvF~K 379 (386)
--|||-+=.|.|.| | .||++.+. +|=.||.-
T Consensus 4 y~~lYT~q~~kK~K~W----~DG~l~~~~~~~kv~Lyde 38 (83)
T PF10382_consen 4 YECLYTHQKTKKRKKW----HDGFLKYHSFNKKVMLYDE 38 (83)
T ss_pred EEEEEEccccccceee----ECCEEEEEeCCCEEEEEcC
Confidence 35999887777765 7 49999875 44555543
No 30
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=20.09 E-value=58 Score=26.45 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=22.6
Q ss_pred CEEEEEEeeeeec-----CCceeEEe-ecceeEECCee
Q 016630 343 HLVLAQFDKVTRT-----KSRWKCAL-KDGIMHINNKD 374 (386)
Q Consensus 343 NvVLCqYDKV~R~-----KNKWKc~L-KDGIm~INGKD 374 (386)
+++-+.|-+..+- ..+=+..| +|||+.|.+||
T Consensus 46 ~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~~~~ 83 (83)
T cd06477 46 GFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVETKD 83 (83)
T ss_pred CEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEEecC
Confidence 3455566655543 26788887 89999999875
Done!