Query 016630
Match_columns 386
No_of_seqs 106 out of 151
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 16:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rm1_C Transcription initiatio 100.0 5.4E-39 1.8E-43 303.7 5.2 71 316-386 212-285 (286)
2 1nvp_C Transcription initiatio 100.0 5.8E-36 2E-40 238.3 6.2 70 315-386 7-76 (76)
3 1nh2_C Transcription initiatio 100.0 2.5E-34 8.7E-39 230.3 6.2 71 316-386 5-78 (79)
4 1nvp_B Transcription initiatio 98.3 1.1E-07 3.7E-12 72.0 -0.2 28 5-32 8-55 (57)
5 1nh2_B Transcription initiatio 98.0 6.8E-07 2.3E-11 66.8 -0.3 28 5-32 4-51 (53)
6 2v8f_C MDIA1, profilin IIA; al 34.1 25 0.00086 23.3 2.2 17 91-107 6-22 (26)
7 1e0n_A Hypothetical protein; Y 25.3 40 0.0014 21.6 2.0 20 367-386 5-24 (27)
8 1s1d_A Apyrase; adpase, five-b 24.9 47 0.0016 32.6 3.4 34 345-378 39-76 (331)
9 2dk1_A WW domain-binding prote 23.4 38 0.0013 24.6 1.8 27 355-386 5-31 (50)
10 2k7i_A UPF0339 protein ATU0232 20.9 44 0.0015 26.8 1.9 21 345-366 22-42 (83)
11 1e0l_A Formin binding protein; 20.1 42 0.0014 22.4 1.4 25 357-386 6-30 (37)
No 1
>1rm1_C Transcription initiation factor IIA large chain; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.4e-39 Score=303.70 Aligned_cols=71 Identities=42% Similarity=0.670 Sum_probs=49.2
Q ss_pred CCCCCCCCCCCCCCCccc---ccccCCCCCCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630 316 DDDDEPLNENDDDELDDV---DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386 (386)
Q Consensus 316 e~dEdpLNsdDDdd~dD~---Dd~Ed~~t~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 386 (386)
..++|++|||+||+++|. +++++..+.|+||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus 212 ~~d~d~insdlDd~dd~~~~~~~~~~~~~~n~vlc~ydKV~R~knkWKc~lKdGi~~ingkdy~F~ka~GE~ew 285 (286)
T 1rm1_C 212 LLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 285 (286)
T ss_dssp ----------------CCBCCC---CSTTSCEEEEEEEEEEEETTEEEEEEEEEEEECSSCEEEEEEEEEEEEC
T ss_pred ccccccccCccCCcccccccccccccccccceEEEEEeeeeecccceeEEeeeeeEEECCceeeeeeccEEEee
Confidence 357889999986666543 33446689999999999999999999999999999999999999999999999
No 2
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=100.00 E-value=5.8e-36 Score=238.30 Aligned_cols=70 Identities=40% Similarity=0.773 Sum_probs=46.8
Q ss_pred CCCCCCCCCCCCCCCCcccccccCCCCCCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630 315 EDDDDEPLNENDDDELDDVDQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386 (386)
Q Consensus 315 de~dEdpLNsdDDdd~dD~Dd~Ed~~t~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 386 (386)
++++||+|||+||+++++. .++++++|+||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus 7 ~~~~ed~lnsd~Dd~dd~~--~~~~~~~n~vlC~ydKV~R~KnkWKc~LKdGim~ingkdy~F~ka~GE~eW 76 (76)
T 1nvp_C 7 GQVEEEPLNSEDDVSDEEG--QELFDTENVVVCQYDKIHRSKNKWKFHLKDGIMNLNGRDYIFSKAIGDAEW 76 (76)
T ss_dssp -------------------------CCCCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccccccccCCcCCCccccc--ccccCCCcEEEEEEEEEeccCceEEEEEeccEEEECCEEEEEeccceeecC
Confidence 4578999999998765544 346789999999999999999999999999999999999999999999999
No 3
>1nh2_C Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: b.56.1.1 PDB: 1ytf_C*
Probab=100.00 E-value=2.5e-34 Score=230.28 Aligned_cols=71 Identities=42% Similarity=0.670 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCCCCCccc---ccccCCCCCCEEEEEEeeeeecCCceeEEeecceeEECCeeeeeecccccccC
Q 016630 316 DDDDEPLNENDDDELDDV---DQGEELNTQHLVLAQFDKVTRTKSRWKCALKDGIMHINNKDILFNKATGEFDF 386 (386)
Q Consensus 316 e~dEdpLNsdDDdd~dD~---Dd~Ed~~t~NvVLCqYDKV~R~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 386 (386)
+.++|+||||+|++++|. +++++.++.|+||||||||+|+||||||+|||||||||||||||+||+|||||
T Consensus 5 ~~d~d~insdlDd~dd~~~~~~~~~d~~~~n~vlC~ydKV~R~KnKWKc~LKdGi~~ingkDy~F~ka~GE~eW 78 (79)
T 1nh2_C 5 LLDTDEVGSELDDSDDDYLISEGEEDGPDENLMLCLYDKVTRTKARWKCSLKDGVVTINRNDYTFQKAQVEAEW 78 (79)
T ss_dssp ----------------CCBC---------CCEEEEEEEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred ccccccccCccCCccccccccccccccccCcEEEEEEEEEeeecceEEEEEeeeEEEECCEEEEEecccEEEEE
Confidence 357889999987665554 33345589999999999999999999999999999999999999999999999
No 4
>1nvp_B Transcription initiation factor IIA alpha chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1
Probab=98.25 E-value=1.1e-07 Score=72.04 Aligned_cols=28 Identities=39% Similarity=0.738 Sum_probs=22.1
Q ss_pred ccceEEeehHHHHHHH--------------------HHHHhhhhccee
Q 016630 5 ATGMVYIRVIEDVISK--------------------IWEMKMIQAGVI 32 (386)
Q Consensus 5 ~~s~vyi~viedvi~k--------------------~we~km~q~g~i 32 (386)
+++.||.+||||||++ +||.||+|.||+
T Consensus 8 ~v~~vY~~VIedVI~~vr~~F~~~Gvde~vL~eLk~~We~KL~~s~a~ 55 (57)
T 1nvp_B 8 TVPKLYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAV 55 (57)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC-----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 6799999999999998 999999999986
No 5
>1nh2_B Transcription initiation factor IIA large chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 PDB: 1ytf_B*
Probab=98.00 E-value=6.8e-07 Score=66.77 Aligned_cols=28 Identities=29% Similarity=0.622 Sum_probs=22.7
Q ss_pred ccceEEeehHHHHHHH--------------------HHHHhhhhccee
Q 016630 5 ATGMVYIRVIEDVISK--------------------IWEMKMIQAGVI 32 (386)
Q Consensus 5 ~~s~vyi~viedvi~k--------------------~we~km~q~g~i 32 (386)
.++.||.+||+|||++ +||.||+|+||+
T Consensus 4 ~v~~vY~~VI~dVI~~vr~~F~~~Gvde~vL~eLk~~We~KL~~s~va 51 (53)
T 1nh2_B 4 EASRVYEIIVESVVNEVREDFENAGIDEQTLQDLKNIWQKKLTETKVT 51 (53)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHcCCC
Confidence 4788999999999998 999999999985
No 6
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=34.06 E-value=25 Score=23.29 Aligned_cols=17 Identities=53% Similarity=1.122 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCCCCCC
Q 016630 91 PLPGSTPLPGSTPLPGT 107 (386)
Q Consensus 91 ~~~~~~~~~~~~~~~g~ 107 (386)
||||...+|-..||||.
T Consensus 6 plPg~~giPpPpplPg~ 22 (26)
T 2v8f_C 6 PLPGVASIPPPPPLPGX 22 (26)
T ss_pred CCCCCCCCCCCCCCCCc
Confidence 45565556666677773
No 7
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=25.32 E-value=40 Score=21.58 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=16.8
Q ss_pred eeEECCeeeeeecccccccC
Q 016630 367 IMHINNKDILFNKATGEFDF 386 (386)
Q Consensus 367 Im~INGKDyvF~KatGEfEw 386 (386)
+-+-.||-|.|+..|++-.|
T Consensus 5 ~~~~~g~~YYyN~~T~~s~W 24 (27)
T 1e0n_A 5 IIHENGRPLYYNAEQKTKLH 24 (27)
T ss_dssp EEESSSSEEEEETTTTEEES
T ss_pred EECCCCCeEEEECCCCCEec
Confidence 45568999999999999776
No 8
>1s1d_A Apyrase; adpase, five-blade beta propeller, calcium-binding protein, nucleotide-binding motif, hydrolase; HET: GP2; 1.60A {Homo sapiens} SCOP: b.67.3.1 PDB: 1s18_A* 2h2n_A 2h2u_A
Probab=24.92 E-value=47 Score=32.64 Aligned_cols=34 Identities=24% Similarity=0.563 Sum_probs=24.3
Q ss_pred EEEEEeeeeec--CCceeEEeecceeEECCe--eeeee
Q 016630 345 VLAQFDKVTRT--KSRWKCALKDGIMHINNK--DILFN 378 (386)
Q Consensus 345 VLCqYDKV~R~--KNKWKc~LKDGIm~INGK--DyvF~ 378 (386)
|+.=-||-.|. +++|++.||-|.+..+++ .|-|.
T Consensus 39 iIaDLD~~Sk~~~~~~w~S~~~~G~L~~~~~~~~~si~ 76 (331)
T 1s1d_A 39 VIADLDTESRAQEENTWFSYLKKGYLTLSDSGDKVAVE 76 (331)
T ss_dssp EEEECGGGGBCSSTTCEEEEEEEEEEEEETTSSCEEEE
T ss_pred EEecCchhccccCCCcEEEEEEEEEEEECCCCCeEEEE
Confidence 55556777774 788999999999988763 44443
No 9
>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1
Probab=23.44 E-value=38 Score=24.58 Aligned_cols=27 Identities=11% Similarity=0.411 Sum_probs=21.4
Q ss_pred cCCceeEEeecceeEECCeeeeeecccccccC
Q 016630 355 TKSRWKCALKDGIMHINNKDILFNKATGEFDF 386 (386)
Q Consensus 355 ~KNKWKc~LKDGIm~INGKDyvF~KatGEfEw 386 (386)
.++.|+...-. +|+.|.|+..|+|..|
T Consensus 5 ~~~~W~e~~s~-----~G~~YYyN~~T~eS~W 31 (50)
T 2dk1_A 5 SSGRWVEGITS-----EGYHYYYDLISGASQW 31 (50)
T ss_dssp CSCCEEECCCS-----TTCCCEEESSSCCEES
T ss_pred CCCCeEEEECC-----CCCEEEEECCCCCEEe
Confidence 45678876433 7999999999999877
No 10
>2k7i_A UPF0339 protein ATU0232; protein of unknown function, swapped dimer. PSI2, structural genomics, unknown function; NMR {Agrobacterium tumefaciens str} SCOP: d.348.1.1
Probab=20.91 E-value=44 Score=26.77 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=17.7
Q ss_pred EEEEEeeeeecCCceeEEeecc
Q 016630 345 VLAQFDKVTRTKSRWKCALKDG 366 (386)
Q Consensus 345 VLCqYDKV~R~KNKWKc~LKDG 366 (386)
|.. |+.-....++|+|.||.+
T Consensus 22 Mag-FEi~k~~~Gq~rFrLkA~ 42 (83)
T 2k7i_A 22 MYK-FEIYQDKAGEYRFRFKAS 42 (83)
T ss_dssp CCE-EEEEECTTSCEEEEECCT
T ss_pred ccc-EEEEEcCCCCEEEEEEEC
Confidence 445 999989999999999975
No 11
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=20.13 E-value=42 Score=22.44 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=19.3
Q ss_pred CceeEEeecceeEECCeeeeeecccccccC
Q 016630 357 SRWKCALKDGIMHINNKDILFNKATGEFDF 386 (386)
Q Consensus 357 NKWKc~LKDGIm~INGKDyvF~KatGEfEw 386 (386)
..|+...- -+|+-|-||..|+|..|
T Consensus 6 ~~W~e~~~-----~~G~~YYyN~~T~es~W 30 (37)
T 1e0l_A 6 SEWTEYKT-----ADGKTYYYNNRTLESTW 30 (37)
T ss_dssp CSCEEEEC-----TTSCEEEEETTTTEEES
T ss_pred CCeEEEEC-----CCCCEEEEECCCCCEEe
Confidence 45766543 36999999999999877
Done!