Query 016631
Match_columns 386
No_of_seqs 146 out of 1109
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 08:35:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0960 Mitochondrial processi 100.0 5E-60 1.1E-64 395.5 32.8 385 1-386 82-467 (467)
2 COG0612 PqqL Predicted Zn-depe 100.0 3.5E-49 7.5E-54 365.2 34.6 361 1-373 66-436 (438)
3 KOG2067 Mitochondrial processi 100.0 1.7E-48 3.7E-53 326.8 28.4 378 1-383 73-459 (472)
4 PRK15101 protease3; Provisiona 100.0 1.8E-40 4E-45 335.3 32.3 358 1-369 93-463 (961)
5 TIGR02110 PQQ_syn_pqqF coenzym 100.0 7.4E-40 1.6E-44 308.4 33.4 288 1-303 49-348 (696)
6 PTZ00432 falcilysin; Provision 100.0 8.1E-35 1.8E-39 291.3 34.7 359 1-369 139-575 (1119)
7 PRK15101 protease3; Provisiona 100.0 1E-29 2.3E-34 257.3 32.2 325 18-359 587-918 (961)
8 COG1025 Ptr Secreted/periplasm 100.0 1.7E-28 3.7E-33 230.1 30.5 358 1-369 73-442 (937)
9 COG1026 Predicted Zn-dependent 100.0 2.2E-28 4.8E-33 230.2 26.3 360 1-372 66-462 (978)
10 KOG0959 N-arginine dibasic con 100.0 1.1E-26 2.3E-31 221.9 30.3 354 1-367 77-445 (974)
11 KOG2583 Ubiquinol cytochrome c 99.9 4.2E-24 9.2E-29 180.8 31.8 354 2-377 72-429 (429)
12 PF05193 Peptidase_M16_C: Pept 99.9 2.5E-24 5.4E-29 176.2 16.4 178 115-301 1-184 (184)
13 KOG2019 Metalloendoprotease HM 99.9 9.9E-23 2.1E-27 183.1 26.0 364 2-377 99-504 (998)
14 KOG0961 Predicted Zn2+-depende 99.9 7.6E-23 1.6E-27 183.6 24.4 366 1-380 65-466 (1022)
15 COG1026 Predicted Zn-dependent 99.9 3.5E-20 7.6E-25 175.4 25.6 344 4-367 578-957 (978)
16 PTZ00432 falcilysin; Provision 99.9 2.9E-19 6.2E-24 180.1 28.6 351 4-373 711-1108(1119)
17 COG1025 Ptr Secreted/periplasm 99.8 1.6E-17 3.5E-22 156.9 31.0 328 22-367 570-908 (937)
18 KOG2019 Metalloendoprotease HM 99.8 1.4E-17 3.1E-22 150.3 23.2 345 2-370 610-987 (998)
19 KOG0959 N-arginine dibasic con 99.8 3.2E-16 7E-21 150.7 30.2 321 21-357 576-910 (974)
20 PF00675 Peptidase_M16: Insuli 99.7 8.7E-17 1.9E-21 126.3 10.9 109 1-109 40-148 (149)
21 KOG0961 Predicted Zn2+-depende 99.6 3.1E-14 6.8E-19 128.9 18.7 333 10-356 607-970 (1022)
22 TIGR02110 PQQ_syn_pqqF coenzym 98.6 4.2E-06 9E-11 80.8 17.4 174 183-369 14-195 (696)
23 COG0612 PqqL Predicted Zn-depe 98.5 5.3E-06 1.1E-10 77.4 15.5 184 188-384 36-223 (438)
24 PF00675 Peptidase_M16: Insuli 97.4 0.0078 1.7E-07 46.9 13.5 136 182-330 4-141 (149)
25 PF08367 M16C_assoc: Peptidase 97.2 0.0056 1.2E-07 52.2 10.8 63 2-64 119-192 (248)
26 KOG0960 Mitochondrial processi 96.9 0.075 1.6E-06 46.9 14.8 174 183-369 47-224 (467)
27 KOG2067 Mitochondrial processi 96.5 0.016 3.5E-07 51.0 8.2 120 21-143 324-445 (472)
28 KOG2583 Ubiquinol cytochrome c 91.6 7.9 0.00017 34.8 13.0 178 183-378 36-218 (429)
29 PF08367 M16C_assoc: Peptidase 90.2 5.4 0.00012 34.0 11.0 116 185-306 86-207 (248)
30 PHA03081 putative metalloprote 73.4 69 0.0015 30.0 11.0 130 25-164 57-195 (595)
31 PF09186 DUF1949: Domain of un 72.6 19 0.00042 22.0 6.1 49 9-57 5-54 (56)
32 cd04910 ACT_AK-Ectoine_1 ACT d 62.5 36 0.00078 22.5 5.4 52 5-57 13-65 (71)
33 PF03410 Peptidase_M44: Protei 60.1 1.5E+02 0.0033 27.8 12.4 130 25-164 57-195 (590)
34 PF05193 Peptidase_M16_C: Pept 59.0 20 0.00043 28.2 4.7 42 32-73 140-184 (184)
35 PF12122 DUF3582: Protein of u 56.8 47 0.001 23.8 5.6 49 11-60 13-62 (101)
36 COG1725 Predicted transcriptio 56.3 45 0.00097 24.9 5.6 65 231-302 52-120 (125)
37 PF01729 QRPTase_C: Quinolinat 49.5 19 0.00041 28.6 3.0 45 109-153 102-147 (169)
38 cd04922 ACT_AKi-HSDH-ThrA_2 AC 48.6 66 0.0014 20.2 5.2 46 12-57 19-65 (66)
39 PF11517 Nab2: Nuclear abundan 45.5 1E+02 0.0022 21.7 5.5 49 307-355 25-74 (107)
40 PRK08385 nicotinate-nucleotide 44.6 50 0.0011 28.7 5.0 41 113-153 208-251 (278)
41 COG0157 NadC Nicotinate-nucleo 44.1 57 0.0012 28.2 5.1 39 113-151 214-252 (280)
42 PRK09016 quinolinate phosphori 42.6 55 0.0012 28.7 5.0 38 113-152 234-271 (296)
43 PRK06978 nicotinate-nucleotide 40.5 68 0.0015 28.1 5.2 38 113-152 231-268 (294)
44 PRK06559 nicotinate-nucleotide 40.0 63 0.0014 28.2 4.9 39 113-153 223-261 (290)
45 PF09851 SHOCT: Short C-termin 39.4 62 0.0014 17.2 4.0 28 47-74 3-30 (31)
46 cd04916 ACT_AKiii-YclM-BS_2 AC 38.6 99 0.0022 19.3 5.4 47 12-58 19-66 (66)
47 PF13840 ACT_7: ACT domain ; P 38.1 1.1E+02 0.0023 19.6 4.9 40 13-54 26-65 (65)
48 PRK06543 nicotinate-nucleotide 36.4 77 0.0017 27.6 4.9 38 113-152 219-256 (281)
49 cd04923 ACT_AK-LysC-DapG-like_ 36.1 1E+02 0.0023 18.9 5.1 44 12-56 18-61 (63)
50 cd04919 ACT_AK-Hom3_2 ACT doma 35.7 1.1E+02 0.0025 19.1 5.3 47 11-57 18-65 (66)
51 cd04936 ACT_AKii-LysC-BS-like_ 35.6 1.1E+02 0.0023 18.8 5.2 45 11-56 17-61 (63)
52 PRK07896 nicotinate-nucleotide 35.3 99 0.0021 27.1 5.4 41 113-153 225-266 (289)
53 cd04924 ACT_AK-Arch_2 ACT doma 34.4 1.2E+02 0.0025 18.9 5.2 45 12-56 19-64 (66)
54 cd05023 S-100A11 S-100A11: S-1 32.4 1.7E+02 0.0037 20.2 6.7 74 270-344 3-83 (89)
55 PRK06106 nicotinate-nucleotide 31.5 1E+02 0.0022 26.9 4.9 38 113-152 220-257 (281)
56 cd04914 ACT_AKi-DapG-BS_1 ACT 31.2 1.5E+02 0.0032 19.1 4.7 48 12-60 17-64 (67)
57 TIGR01334 modD putative molybd 31.2 1.2E+02 0.0026 26.4 5.3 40 113-152 214-254 (277)
58 cd04892 ACT_AK-like_2 ACT doma 30.9 1.3E+02 0.0028 18.3 5.6 46 12-57 18-64 (65)
59 PRK05986 cob(I)alamin adenolsy 30.6 82 0.0018 25.6 3.9 38 113-152 130-167 (191)
60 cd08805 Death_ank1 Death domai 30.3 1.8E+02 0.004 19.9 6.7 72 273-351 9-83 (84)
61 COG3870 Uncharacterized protei 29.1 2.1E+02 0.0046 20.3 5.1 54 231-284 13-66 (109)
62 PRK05848 nicotinate-nucleotide 28.6 1.5E+02 0.0032 25.8 5.4 40 113-152 208-248 (273)
63 PF06153 DUF970: Protein of un 27.6 1.9E+02 0.004 21.1 4.9 54 232-285 14-67 (109)
64 PF04444 Dioxygenase_N: Catech 26.7 1.7E+02 0.0038 19.5 4.3 37 270-306 3-41 (74)
65 PHA01346 hypothetical protein 25.9 1.4E+02 0.0031 17.1 4.2 26 53-78 24-49 (53)
66 cd08317 Death_ank Death domain 25.6 2.2E+02 0.0048 19.3 8.1 74 270-350 6-82 (84)
67 cd05026 S-100Z S-100Z: S-100Z 25.4 2.4E+02 0.0052 19.6 6.9 75 268-343 2-83 (93)
68 TIGR00708 cobA cob(I)alamin ad 25.2 1.2E+02 0.0026 24.2 4.0 37 114-152 113-149 (173)
69 PRK05742 nicotinate-nucleotide 25.0 1.5E+02 0.0032 25.8 4.8 36 114-151 216-251 (277)
70 KOG0071 GTP-binding ADP-ribosy 24.9 1.2E+02 0.0026 23.3 3.5 39 118-156 71-109 (180)
71 PRK06096 molybdenum transport 24.5 1.9E+02 0.0041 25.3 5.3 45 14-58 52-102 (284)
72 PF14659 Phage_int_SAM_3: Phag 24.3 67 0.0015 19.5 2.0 18 338-355 41-58 (58)
73 PRK07414 cob(I)yrinic acid a,c 24.1 1.2E+02 0.0026 24.3 3.8 37 114-152 131-167 (178)
74 KOG0088 GTPase Rab21, small G 23.2 99 0.0021 24.1 2.9 33 115-147 98-133 (218)
75 PRK07428 nicotinate-nucleotide 22.6 2E+02 0.0043 25.3 5.1 25 32-56 87-111 (288)
76 cd04937 ACT_AKi-DapG-BS_2 ACT 22.6 2.1E+02 0.0045 18.0 5.3 44 12-56 19-62 (64)
77 PF13373 DUF2407_C: DUF2407 C- 22.4 1E+02 0.0023 23.5 3.0 25 282-306 3-28 (140)
78 PF10369 ALS_ss_C: Small subun 22.4 2.4E+02 0.0051 18.8 4.4 43 11-54 16-58 (75)
79 PF12780 AAA_8: P-loop contain 22.1 3E+02 0.0066 23.8 6.1 72 6-79 65-140 (268)
80 PRK06063 DNA polymerase III su 22.0 2.3E+02 0.0051 25.1 5.6 65 2-71 239-306 (313)
81 PF13075 DUF3939: Protein of u 21.9 1.9E+02 0.0041 22.0 4.1 44 339-383 7-53 (140)
82 KOG3432 Vacuolar H+-ATPase V1 21.6 2.4E+02 0.0051 20.4 4.3 46 115-160 44-89 (121)
83 cd07055 BMC_like_2 Bacterial M 20.8 1.2E+02 0.0026 19.3 2.5 14 130-143 34-48 (61)
84 PF03197 FRD2: Bacteriophage F 20.6 1.8E+02 0.004 20.4 3.5 27 257-283 75-101 (102)
85 cd05024 S-100A10 S-100A10: A s 20.4 3.2E+02 0.0068 19.2 7.4 74 271-345 3-80 (91)
No 1
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-60 Score=395.46 Aligned_cols=385 Identities=58% Similarity=0.939 Sum_probs=368.4
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (386)
|+|+||++++...++..++..|+++|++|+++.|.|++++++++++.++++|.|++++.++.+..|++||++++.|++..
T Consensus 82 laFKGT~~Rs~~alElEieniGahLNAytSReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqev 161 (467)
T KOG0960|consen 82 LAFKGTKNRSQAALELEIENIGAHLNAYTSREQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEV 161 (467)
T ss_pred HHhcCCCcchhHHHHHHHHHHHHHhcccccccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (386)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 160 (386)
+.+..+..++.++...|.++|+++.+.|+.+.|++|+.+||++|.++||.+++|++..+|.++++++.++++++|+.++.
T Consensus 162 d~~~~eVVfdhLHatafQgtPL~~tilGp~enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~ 241 (467)
T KOG0960|consen 162 DKNHQEVVFDHLHATAFQGTPLGRTILGPSENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSK 241 (467)
T ss_pred HhhhhHHHHHHHHHHHhcCCcccccccChhhhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcc
Confidence 98899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 016631 161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240 (386)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre 240 (386)
...+..+. ..+++.|.+.+++...++.|.+++.+++-+.+|.+||+.++.+++.++|+|..+.|.|....|+|-+.+-+
T Consensus 242 ~~~~~~~~-~~~~~~FtgsEvR~rdd~lP~a~~AiAVEG~~w~~pD~~~l~van~iiG~wdr~~g~g~~~~s~La~~~~~ 320 (467)
T KOG0960|consen 242 LQTGDKVP-LVPPARFTGSEVRVRDDDLPLAHIAIAVEGVSWAHPDYFALMVANTIIGNWDRTEGGGRNLSSRLAQKIQQ 320 (467)
T ss_pred cccCcCCC-CCCCccccCceeeecCCCCchhheeeeEecCCcCCccHHHHHHHHHHhhhhhcccCCccCCccHHHHHHHH
Confidence 44443322 22577799999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccceeeeeecccccCCcceeEEEeee-CcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHH
Q 016631 241 NEIAESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDI 319 (386)
Q Consensus 241 ~gl~y~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~ 319 (386)
..++-++.++...|.++|++++|+.+ ++..++.++..+..++.+|..-+|+.|+++||+++..++....+.....++.+
T Consensus 321 ~~l~~sfqsFnt~YkDTGLwG~y~V~~~~~~iddl~~~vl~eW~rL~~~vteaEV~RAKn~Lkt~Lll~ldgttpi~edi 400 (467)
T KOG0960|consen 321 DQLCHSFQSFNTSYKDTGLWGIYFVTDNLTMIDDLIHSVLKEWMRLATSVTEAEVERAKNQLKTNLLLSLDGTTPIAEDI 400 (467)
T ss_pred HHHHHHHhhhhcccccccceeEEEEecChhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence 88999999999999999999999999 77999999999999999998799999999999999999999999999999999
Q ss_pred HHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhhhhccC
Q 016631 320 GRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 386 (386)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~~~~~~ 386 (386)
+++.+.+|...+..++...|++||.++|+++|.+|+..+.++++.+||...+|+++.++..|+|+||
T Consensus 401 GrqlL~~Grri~l~El~~rId~vt~~~Vr~va~k~iyd~~iAia~vG~ie~lpdy~~irs~m~w~R~ 467 (467)
T KOG0960|consen 401 GRQLLTYGRRIPLAELEARIDAVTAKDVREVASKYIYDKDIAIAAVGPIEGLPDYNRIRSGMSWMRW 467 (467)
T ss_pred HHHHhhcCCcCChHHHHHHHhhccHHHHHHHHHHHhhcCCcceeeecccccCchHHHHhccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999997
No 2
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=3.5e-49 Score=365.21 Aligned_cols=361 Identities=33% Similarity=0.547 Sum_probs=320.3
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (386)
|+|+||++++..++.+.++..|+.+|++|+++.|.|++++.+++++.+|+++.+++.+|.|++++|++||+++++|++..
T Consensus 66 m~fkgt~~~~~~~i~~~~~~~G~~~na~ts~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~ 145 (438)
T COG0612 66 MAFKGTTGLPSAELAEAFEKLGGQLNAFTSFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMR 145 (438)
T ss_pred HHccCCCCCChHHHHHHHHHhcCeeeccccchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 79999999998899999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (386)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 160 (386)
..+|...+...+...+|+++|++++++|+.+.|.++|.++|++||++||+|+||+++|+||++++++.++++++|+.|+.
T Consensus 146 ~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~ 225 (438)
T COG0612 146 QDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPG 225 (438)
T ss_pred ccCchHHHHHHHHHHhhccCCCCCCCCCCHHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCCcccccccCCCCccCCCceEE-e---cCCCCceEEEEEeccCCCCCc-hhhHHHHHHHHcCCCCCCCCCCCCcccHHH
Q 016631 161 DPTTASQLVANEPAIFTGSEVRI-I---DDDIPLAQFAVAFAGASWTDP-DSIALMVMQAMLGSWNKNSVGGKHMGSELA 235 (386)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~~-~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~ 235 (386)
..+....+ ..+...+..+.. . .++..++++.++++.+....+ +++++.+++.+||+ +++|+||
T Consensus 226 -~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~llgg---------~~~SrLf 293 (438)
T COG0612 226 -AAPPPKIP--PEPPLGPERVVRVNDPEQPDLEQAWLALGYPGPDYDSPDDYAALLLLNGLLGG---------GFSSRLF 293 (438)
T ss_pred -cCCCCCCC--CccccCCCceEEecCCCCchhhhhhhhccccCcCcCcchhhHHHHHHHHHhCC---------CcchHHH
Confidence 22222111 222222222222 2 345567788888888877665 78899999999984 4789999
Q ss_pred HHhcc-ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-C---CCHHHHHHHHHHHHHhhHhhcc
Q 016631 236 QRVGI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-R---VSEADVTRARNQLKSSLLLHID 310 (386)
Q Consensus 236 ~~lre-~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~---~~~~el~~~k~~~~~~~~~~~~ 310 (386)
+.+|+ +|++|+++++...+.+.+.+.+++.+.+.+..++.+.+.+.+..++. . +++++++.+|..+...+....+
T Consensus 294 ~~~re~~glay~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~ 373 (438)
T COG0612 294 QELREKRGLAYSVSSFSDFLSDSGLFSIYAGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLD 373 (438)
T ss_pred HHHHHhcCceeeeccccccccccCCceEEEEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccC
Confidence 99997 69999999888888889999999999988888888888888888877 4 9999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCC
Q 016631 311 GTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPD 373 (386)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~ 373 (386)
++...++.+.......+.....+++.+.|+.||++||++++++++.+++.+++++||.+..+.
T Consensus 374 s~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~~~~~ 436 (438)
T COG0612 374 SPSSIAELLGQYLLLGGSLITLEELLERIEAVTLEDVNAVAKKLLAPENLTIVVLGPEKALKD 436 (438)
T ss_pred CHHHHHHHHHHHHHhcCCccCHHHHHHHHHhcCHHHHHHHHHHhcCCCCcEEEEEcccccccc
Confidence 999999999877655566677899999999999999999999999998899999999876543
No 3
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-48 Score=326.82 Aligned_cols=378 Identities=34% Similarity=0.530 Sum_probs=347.5
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (386)
|+|+.|.+++..++...|+.+|+.+.|+++++.+.|.+++.++.++.++++|.|.+.+|.|++++++.++..+.-|+...
T Consensus 73 LAF~ST~~~~~~ei~~~LE~~GGn~~cqsSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el 152 (472)
T KOG2067|consen 73 LAFKSTERFSSKEILAELEKLGGNCDCQSSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEEL 152 (472)
T ss_pred HhhccccCCcHHHHHHHHHHhCCcccccccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhhecccc
Confidence 68999999998899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (386)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 160 (386)
...|+..+.+.++.+.|.+...+.+.+++.+.++.|+.+.|.+|.+.+|+|.+|++..+| ++.+++.+.++++++.||+
T Consensus 153 ~~~Pe~lL~e~iH~Aay~~ntlg~pl~cp~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vG-V~heelv~~~~~~~~~~~s 231 (472)
T KOG2067|consen 153 WMRPEPLLTEMIHSAAYSGNTLGLPLLCPEENIDKINREVLEEYLKYFYTPERMVLAGVG-VEHEELVEIAEKLLGDLPS 231 (472)
T ss_pred ccCchhhHHHHHHHHHhccCcccccccCChhhhhhhhHHHHHHHHHhcCChhheEeeecC-CCHHHHHHHHHHHhccCCc
Confidence 889999999999999999999999999999999999999999999999999999999999 9999999999999999998
Q ss_pred CCCcccccccCCCCccCCCceEEec------CCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCC--CCCCCccc
Q 016631 161 DPTTASQLVANEPAIFTGSEVRIID------DDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNS--VGGKHMGS 232 (386)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~--~~~~~~~s 232 (386)
...+.... .++...++...+.. ....-++|.++|-++++.++|.+++.+++-++|++++|+ |||+||.|
T Consensus 232 ~~~p~i~~---~~aQYtGG~~~~~~d~~~~~~g~EltHv~lg~Eg~~~~deD~v~~avLq~lmGGGGSFSAGGPGKGMyS 308 (472)
T KOG2067|consen 232 TKVPPIDE---SKAQYTGGELKIDTDAPQVTGGPELTHVVLGFEGCSWNDEDFVALAVLQMLMGGGGSFSAGGPGKGMYS 308 (472)
T ss_pred cCCCCccc---chhhccccccccCCCCccccCccceeeeeEeeccCCCCChhHHHHHHHHHHhcCCcccCCCCCCcchHH
Confidence 64333211 34555555433221 112567999999999999999999999999999999999 99999999
Q ss_pred HHHHHhc-cccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccC
Q 016631 233 ELAQRVG-INEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDG 311 (386)
Q Consensus 233 ~L~~~lr-e~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~ 311 (386)
|||..+- +..+.|++.+++..|.++|+|.|+.+++|+.+.++++.+..++-.+..+++++|+++||.++...+....++
T Consensus 309 rLY~~vLNry~wv~sctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLES 388 (472)
T KOG2067|consen 309 RLYLNVLNRYHWVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLES 388 (472)
T ss_pred HHHHHHHhhhHHHHHhhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 9999886 569999999999999999999999999999999999999999998877999999999999999999999999
Q ss_pred chHHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhhhh
Q 016631 312 TSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYW 383 (386)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~~~ 383 (386)
-.-.++.+.++.+.+|....++++.+.|+++|++||.++++++|. .+.+++-.|+...+|++..+.++.+.
T Consensus 389 R~V~~EDvGRQVL~~g~rk~p~e~~~~Ie~lt~~DI~rva~kvlt-~~p~va~~Gd~~~lpt~~~i~~~~~~ 459 (472)
T KOG2067|consen 389 RPVAFEDVGRQVLTTGERKPPDEFIKKIEQLTPSDISRVASKVLT-GKPSVAAFGDGTGLPTYDHIGNAVSS 459 (472)
T ss_pred cchhHHHHhHHHHhccCcCCHHHHHHHHHhcCHHHHHHHHHHHhc-CCceeccCCcccCCcchhhhhhhccc
Confidence 999999999999999998899999999999999999999999887 45789999999999999999887653
No 4
>PRK15101 protease3; Provisional
Probab=100.00 E-value=1.8e-40 Score=335.33 Aligned_cols=358 Identities=16% Similarity=0.151 Sum_probs=291.4
Q ss_pred CccccCCCCC-hHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 016631 1 MIFKGTEKRT-ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (386)
Q Consensus 1 m~f~Gt~~~~-~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~ 79 (386)
|+|+||+++| ..++.+.++.+|+++|++|+.++|.|++++++++++.+|+++++++.+|.|+++++++||+++.+|++.
T Consensus 93 mlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~ 172 (961)
T PRK15101 93 MVLMGSKKYPQPDSLAEFLKKHGGSHNASTASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTM 172 (961)
T ss_pred HHhcCCccCCCcchHHHHHHHhCCCccceECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 8999999997 578999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhccc----CHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 016631 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTI----TKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLF 155 (386)
Q Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i----~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~ 155 (386)
...+|...+...+...+|++|||+++.+|+.++|+++ +.++|++||++||.|+||+++|+|+++++++.++++++|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~hp~~~~~~G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F 252 (961)
T PRK15101 173 ARSRDGMRMAQVSAETINPAHPGSRFSGGNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTF 252 (961)
T ss_pred hcCCHHHHHHHHHHhhCCCCCCcccCCCCCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHh
Confidence 8888999999999999999999999999999999997 699999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCc-hhhHHHHHHHHcCCCCCCCCCCCCcccHH
Q 016631 156 TKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDP-DSIALMVMQAMLGSWNKNSVGGKHMGSEL 234 (386)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~ll~~iL~~~~~~~~~~~~~~s~L 234 (386)
+.||++..+..............+......+..++..+.+.|+.|..... ......+++.+|++. ..+.|
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~p~~~~~~~~~~~~~l~~ll~~~---------~~g~l 323 (961)
T PRK15101 253 GRVPNKNASVPEITVPVVTDAQKGIIIHYVPAQPRKVLRVEFRIDNNSAKFRSKTDEYISYLIGNR---------SPGTL 323 (961)
T ss_pred ccCCCCCCCCCCCCCCCCCHHHcCeEEEEEECCCCcEEEEEEecCCcHHHHhhCHHHHHHHHhcCC---------CCCcH
Confidence 99987653321111001111111222233345566788888987764322 233567899999852 34678
Q ss_pred HHHhccccceeeeeecccc--cCCcceeEEEeeeCc---ccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhh
Q 016631 235 AQRVGINEIAESMMAFNTN--YKDTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLH 308 (386)
Q Consensus 235 ~~~lre~gl~y~~~~~~~~--~~~~~~~~i~~~~~~---~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~ 308 (386)
+..|+++|++|+++++... ..+.+.|.+++.+.+ ++..++++.+.++|+.+++ |+++++++++|+.+..++...
T Consensus 324 ~~~L~~~gla~~v~s~~~~~~~~~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~~g~~~~el~~~k~~~~~~~~~~ 403 (961)
T PRK15101 324 SDWLQKQGLAEGISAGADPMVDRNSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLREKGIDKSYFDELAHVLDLDFRYP 403 (961)
T ss_pred HHHHHHcCccceeeeccccccCCCceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhccccCC
Confidence 8888889999999887653 356789999999887 4889999999999999998 999999999999999887543
Q ss_pred -ccCchHHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 309 -IDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 309 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
...+...+..++..+ ....+.+.......+..++.++|++.++. |.++++.+++++|..
T Consensus 404 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~i~~~~~~-l~~~n~~i~~~~~~~ 463 (961)
T PRK15101 404 SITRDMDYIEWLADTM-LRVPVEHTLDAPYIADRYDPKAIKARLAE-MTPQNARIWYISPQE 463 (961)
T ss_pred CCCChHHHHHHHHHHh-hhCCHHHheeCchhhhcCCHHHHHHHHhh-cCHhHEEEEEEeCCC
Confidence 234455556665543 22222223345678899999999999987 788899999999864
No 5
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=7.4e-40 Score=308.42 Aligned_cols=288 Identities=18% Similarity=0.223 Sum_probs=245.2
Q ss_pred CccccCCCCChH-HHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 016631 1 MIFKGTEKRTAR-DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (386)
Q Consensus 1 m~f~Gt~~~~~~-~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~ 79 (386)
|+|+||++++.. +|.+.++.+|+++|++|+.++|.|++++++++++.+|+++.+++.+|.|+++++++||+++.+|++.
T Consensus 49 MLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~ 128 (696)
T TIGR02110 49 LLFLGGERFQGDDRLMPWVQRQGGQVNATTLERTTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIA 128 (696)
T ss_pred HHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 799999999985 7999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccC---HHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhc
Q 016631 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTIT---KEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFT 156 (386)
Q Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~---~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~ 156 (386)
..++|...+.+.+...+|++|||+++.+|+.+++++++ .++|++||++||.|+||+++|+||+++++++++++++|+
T Consensus 129 ~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~esL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~ 208 (696)
T TIGR02110 129 WQNDADTLREAALLDALQAGHPLRRFHAGSRDSLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGA 208 (696)
T ss_pred HhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999876 999999999999999999999999999999999999999
Q ss_pred CCCCCCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHH
Q 016631 157 KLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQ 236 (386)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~ 236 (386)
.|+.+..+.... +.+........+.....++.++.+.++.++..+++ .+.+++.+|++ +++|+|++
T Consensus 209 ~~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~q~~l~~~~p~~~~~d~~--al~lL~~iLg~---------g~sSrL~~ 274 (696)
T TIGR02110 209 SLAAGGECAQAP---PAPLLRFDRLTLAGGSEPRLWLLFALAGLPATARD--NVTLLCEFLQD---------EAPGGLLA 274 (696)
T ss_pred CCCCCCCCCCCC---CCCCCCCceeEEEecCcceEEEEEeecCCCCCChH--HHHHHHHHhCC---------CcchHHHH
Confidence 998764432111 12222222223333445667777777765555544 57899999985 57899999
Q ss_pred HhccccceeeeeecccccCCcc--eeEEEeee---CcccHHHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHH
Q 016631 237 RVGINEIAESMMAFNTNYKDTG--LFGVYAVA---KPDCLDDLAYAIMYETTKLAY---RVSEADVTRARNQLKS 303 (386)
Q Consensus 237 ~lre~gl~y~~~~~~~~~~~~~--~~~i~~~~---~~~~~~~~~~~~~~~i~~l~~---~~~~~el~~~k~~~~~ 303 (386)
.||++|++|+++++. .+.+.+ .|.|++.+ .+++.+++++.+.++|+++++ +++.+|++++|.+-..
T Consensus 275 ~LRe~GLaysV~s~~-~~~~~g~~lf~I~~~lt~~~~~~~~~v~~~i~~~L~~L~~~~~~~~~eel~rlk~~~~~ 348 (696)
T TIGR02110 275 QLRERGLAESVAATW-LYQDAGQALLALEFSARCISAAAAQQIEQLLTQWLGALAEQTWAEQLEHYAQLAQRRFQ 348 (696)
T ss_pred HHHHCCCEEEEEEec-cccCCCCcEEEEEEEEcCCCccCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhh
Confidence 999999999999865 444444 89999987 246899999999999999954 6889999999987433
No 6
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=8.1e-35 Score=291.33 Aligned_cols=359 Identities=14% Similarity=0.141 Sum_probs=271.8
Q ss_pred CccccCCCCChHHHHHHHHhcC--CeeeeeecceEEEEEEEeccc-cHHHHHHHHHHhhcCCCCChHHH--H--------
Q 016631 1 MIFKGTEKRTARDLEEEIENMG--GHLNAYTSREQTTYYAKVLDK-DVNNALDILADILQNSTFDQARI--T-------- 67 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g--~~~~~~t~~~~~~~~~~~~~~-~l~~~l~~l~~~~~~~~~~~~~~--~-------- 67 (386)
|+|+||++||..++...+...| +.+||+|+.|+|+|.+++.++ ++..+++++.+.+.+|.|+++++ .
T Consensus 139 ~~f~GS~k~p~~~~~~~l~~~gl~~~lNA~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~ 218 (1119)
T PTZ00432 139 SVLSGSKKYNYKDSFSLLVQGGFNSFLNAYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKV 218 (1119)
T ss_pred HHhCCCCCCCcccHHHHHHhcCcCCCccccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccc
Confidence 7899999999999999998765 789999999999999999885 69999999999999999988753 2
Q ss_pred -HH--------------------HHHHHHHHHHhhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHH
Q 016631 68 -RE--------------------RDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIH 126 (386)
Q Consensus 68 -~~--------------------k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~ 126 (386)
++ +++|.+|++....+|...+.+.+.+.+| ++||+++.+|++++|.+++.++|++||+
T Consensus 219 ~~~~~~~~~~~e~~~~~~~~l~~kgVV~~Emk~~~~~p~~~~~~~~~~~lf-~~pY~~~~~G~~~~I~~lt~e~l~~Fh~ 297 (1119)
T PTZ00432 219 TKLKDDEKNADELGNVHDRHVSYSGIVYSEMKKRFSDPLSFGYSVIYQNLF-SNVYKYDSGGDPKDIVELTYEELVEFYK 297 (1119)
T ss_pred cccccccccccccccccccccchhhHHHHHHHHhhCCHHHHHHHHHHHHHh-CCCCCCCCCCChHhhccCCHHHHHHHHH
Confidence 21 7889999999999999999999999999 9999999999999999999999999999
Q ss_pred hhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCCCCcc----c--ccccCC-CCccCCCc-eEE--ecCCCCceEEEEE
Q 016631 127 THYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTA----S--QLVANE-PAIFTGSE-VRI--IDDDIPLAQFAVA 196 (386)
Q Consensus 127 ~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~-~~~~~~~~-~~~--~~~~~~~~~v~~~ 196 (386)
+||.|+|++++++||+|++++.++++++|+.+|+..... . +..+.+ .+.+.+.. +.. ...+..+..+.++
T Consensus 298 ~~Y~P~N~~l~v~Gdid~~~~l~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~ 377 (1119)
T PTZ00432 298 TYYGPKTATVYFYGPNDVTERLEFVDNYLTKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSV 377 (1119)
T ss_pred HhcCccceEEEEEcCCCHHHHHHHHHHHHhhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEE
Confidence 999999999999999999999999999998887652211 0 000001 01111221 111 1223334556554
Q ss_pred -eccC-CC----------CC-chhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeee-eecccccCCcceeEE
Q 016631 197 -FAGA-SW----------TD-PDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESM-MAFNTNYKDTGLFGV 262 (386)
Q Consensus 197 -~~~~-~~----------~~-~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~-~~~~~~~~~~~~~~i 262 (386)
|+.+ .. .+ ++..++.|++.+|++ +.+|+|++.||+.|++|++ .++.......+.|.+
T Consensus 378 ~w~~~p~~~~~~~~~~~~~d~~~~~AL~VLs~lLgg---------g~sS~L~q~LrE~GLa~svv~~~~~~~~~~~~f~I 448 (1119)
T PTZ00432 378 SWLLNPKHNGSKDYDKSLIDPVDYLALLVLNYLLLG---------TPESVLYKALIDSGLGKKVVGSGLDDYFKQSIFSI 448 (1119)
T ss_pred EEEcCCccccccccccccCCHHHHHHHHHHHHHHcC---------CCccHHHHHHHhcCCCcCCCcCcccCCCCceEEEE
Confidence 8763 21 23 578999999999985 5699999999999999995 445555667788888
Q ss_pred Eee-eCc-------ccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhccC----chHHHHHHHHHHHhhCCc
Q 016631 263 YAV-AKP-------DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDG----TSPVAEDIGRQLLTYGRR 329 (386)
Q Consensus 263 ~~~-~~~-------~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 329 (386)
.+. +.. +++.++.+.+.++|+++.+ |+++++++++++++.-.+...... ....+..+...++..+++
T Consensus 449 ~l~g~~~~~~~~~~~~~~ev~~~I~~~L~~l~~eGi~~eele~a~~qlef~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp 528 (1119)
T PTZ00432 449 GLKGIKETNEKRKDKVHYTFEKVVLNALTKVVTEGFNKSAVEASLNNIEFVMKELNLGTYPKGLMLIFLMQSRLQYGKDP 528 (1119)
T ss_pred EEEcCChHhccchhhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHhcCCCH
Confidence 875 332 3477999999999999988 999999999999988877754221 245566666655444555
Q ss_pred cCH---HHHHHHHh---cCCHHHHHHHHHHhhccCCcE-EEEecCCC
Q 016631 330 IPF---AELFARID---SVDASTVKRVANRFIYDRDIA-IAAMGPIQ 369 (386)
Q Consensus 330 ~~~---~~~~~~i~---~vt~~dv~~~~~~~l~~~~~~-~~i~gp~~ 369 (386)
... +...+.++ .-+..-+..++++||-+++.+ ++++-|..
T Consensus 529 ~~~l~~~~~l~~lr~~~~~~~~y~e~Li~k~ll~N~h~~~v~~~p~~ 575 (1119)
T PTZ00432 529 FEILRFEKLLNELKLRIDNESKYLEKLIEKHLLNNNHRVTVHLEAVE 575 (1119)
T ss_pred HHHHhhHHHHHHHHHHHhcccHHHHHHHHHHccCCCeeeEEEEecCC
Confidence 442 22222222 123457999999999766643 34444443
No 7
>PRK15101 protease3; Provisional
Probab=99.98 E-value=1e-29 Score=257.29 Aligned_cols=325 Identities=11% Similarity=0.065 Sum_probs=244.2
Q ss_pred HHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhhC-ChHHHHHHHHHHhh
Q 016631 18 IENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEG-QTEEVIFDHLHATA 96 (386)
Q Consensus 18 l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~-~p~~~~~~~~~~~~ 96 (386)
....|.+++.. +.+++.+++++++++++.+|+++.+.+.+|.|++++|+++|+.+++++++... .|...+...+ ..
T Consensus 587 a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~~~~~~~~~~~~~~~--~~ 663 (961)
T PRK15101 587 ASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDSAEKGKAYEQAIMPA--QM 663 (961)
T ss_pred HHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhcccCcHHHHHHHH--HH
Confidence 33458888888 78999999999999999999999999999999999999999999999998543 3333332222 34
Q ss_pred cCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCCCCcccccccCCCCcc
Q 016631 97 FQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIF 176 (386)
Q Consensus 97 ~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (386)
+..+||+.. .++.+.++++|.++|++||+++|.|.|++++|+||++.+++.++++++++.++..+...........+.
T Consensus 664 ~~~~py~~~-~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l~~~~~~~~~~~~~~~~~- 741 (961)
T PRK15101 664 LSQVPYFER-DERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQLGADGTEWWRGKDVVVDK- 741 (961)
T ss_pred HhcCCCCCH-HHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHhccCCcccccccceEeCC-
Confidence 678888864 568999999999999999999999999999999999999999999998888865322110000000111
Q ss_pred CCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc-ccceeeeeecccccC
Q 016631 177 TGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI-NEIAESMMAFNTNYK 255 (386)
Q Consensus 177 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre-~gl~y~~~~~~~~~~ 255 (386)
.........+...+..+.+.+..++.. .....+++.+|++ ++++|||+.||+ +||+|+|+++.....
T Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~~~~v~~~lLg~---------~~ssrlf~~LRtk~qLgY~V~s~~~~~~ 809 (961)
T PRK15101 742 KQSVNFEKAGSSTDSALAAVYVPTGYD---EYQSSAYSSLLGQ---------IIQPWFYNQLRTEEQLGYAVFAFPMSVG 809 (961)
T ss_pred CCeEEEecCCCCCCCeEEEEEEeCCCC---CHHHHHHHHHHHH---------HHhHHHHHHHHHHhhhceEEEEEeeccC
Confidence 011111222233444455555433332 2566788888874 568999999995 799999999887777
Q ss_pred CcceeEEEeeeCc---ccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccC-
Q 016631 256 DTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIP- 331 (386)
Q Consensus 256 ~~~~~~i~~~~~~---~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 331 (386)
+.+.+.+.++++. +.+.+.+..+.+.+.....++|++||+++|+.++..+....+++...+..++..+..++...+
T Consensus 810 ~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l~~lt~eE~~~~k~~l~~~~~~~~~sl~~~a~~~~~~i~~~~~~fd~ 889 (961)
T PRK15101 810 RQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKLRAMKPEEFAQYQQALINQLLQAPQTLGEEASRLSKDFDRGNMRFDS 889 (961)
T ss_pred CeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCcCh
Confidence 6677777776654 445555555554432222389999999999999999999999999999999888754555555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh-hccCC
Q 016631 332 FAELFARIDSVDASTVKRVANRF-IYDRD 359 (386)
Q Consensus 332 ~~~~~~~i~~vt~~dv~~~~~~~-l~~~~ 359 (386)
.++..+.|++||.+||+++++++ +.++.
T Consensus 890 ~~~~~~~i~~vT~edv~~~~~~~~~~~~~ 918 (961)
T PRK15101 890 RDKIIAQIKLLTPQKLADFFHQAVIEPQG 918 (961)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcCCCC
Confidence 47899999999999999999998 66655
No 8
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-28 Score=230.13 Aligned_cols=358 Identities=15% Similarity=0.167 Sum_probs=285.7
Q ss_pred CccccCCCCC-hHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 016631 1 MIFKGTEKRT-ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (386)
Q Consensus 1 m~f~Gt~~~~-~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~ 79 (386)
|+|+|+++|| ..++..+|..+||+.||+|..+.|+|++...++.++.+|+.+++.+.+|.|+++.+++|+.+|-+|+..
T Consensus 73 mlfmGseKYP~~~~f~~fLskhgGs~NA~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~ 152 (937)
T COG1025 73 MLFMGSEKYPDEGGFSEFLSKHGGSHNASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTM 152 (937)
T ss_pred HHHhcCccCCCccchHHHHHHcCCccccccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhc
Confidence 7899999998 567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcc----cCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 016631 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKT----ITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLF 155 (386)
Q Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~----i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~ 155 (386)
...+-..++.+.....+-++||+++...|..+.+.. ...+++.+||+++|.++||+++|.|+-+.+++.+++.+.|
T Consensus 153 ~~~~D~~R~~~~~~~~~np~HP~srFs~GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F 232 (937)
T COG1025 153 NLTSDGWRMYQVQALTANPGHPLSKFSTGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLF 232 (937)
T ss_pred CcCchHHHHHHHHHhhcCCCCCccccCCCChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHh
Confidence 777767777777777777899999999999999988 5679999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCc-hhhHHHHHHHHcCCCCCCCCCCCCcccHH
Q 016631 156 TKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDP-DSIALMVMQAMLGSWNKNSVGGKHMGSEL 234 (386)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~ll~~iL~~~~~~~~~~~~~~s~L 234 (386)
+.+|+.....++.+..+..+.....+....+..+...+.+.|+.+..... ..-...+++++||+- | .+-|
T Consensus 233 ~~Ipn~~~~~p~~p~p~~~d~~t~~ii~i~p~~~~~~L~i~f~i~~~~~~~~~~~~~~~s~Lig~e----s-----~gsL 303 (937)
T COG1025 233 GDIPNRARKIPPIPVPVVTDEQTGKIIHIVPAKPRPRLRIYFPIDDNSAKFRSKPDEYLSHLIGNE----S-----PGSL 303 (937)
T ss_pred CcCCCCCCCCCCCCCCCCChHHhCceEEeccCCCCceEEEEEEcCCcccccccCCHHHHHHHhccC----C-----CchH
Confidence 99998665444333112223333344445555566778889987765443 234567888899862 2 3447
Q ss_pred HHHhccccceeeeeeccccc-CCcceeEEEeeeCc---ccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhc
Q 016631 235 AQRVGINEIAESMMAFNTNY-KDTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHI 309 (386)
Q Consensus 235 ~~~lre~gl~y~~~~~~~~~-~~~~~~~i~~~~~~---~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~ 309 (386)
-..|.++|++-++.+..... .+.+.|.|...... ++.++++..+.+.+.-+.. ++....|+...+..-..+....
T Consensus 304 ~~~Lk~~Glit~l~a~~~~~~~n~~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~~~~~~~~f~Elq~v~~l~f~y~~ 383 (937)
T COG1025 304 LAWLKKQGLITELSAGLDPISGNYGVFAISYELTDKGLAHYDRVIALTFQYLNLLREKGIPKYTFDELQNVLDLDFRYPS 383 (937)
T ss_pred HHHHHhccchhhhccccccccCCcceEEEEeehhhcchhhHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHhhhcccc
Confidence 77888999999988876554 46788888876543 8899999999999999988 9999889888777666666543
Q ss_pred c-CchHHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 310 D-GTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 310 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
. .+.+....++..+. .-.+.......-.+..-++++++.++..+. |++.++..+++..
T Consensus 384 ~t~~~~~~~~l~~~m~-~~p~~~~~~~~~~~~~yd~~~~~~~l~~~~-pen~R~~lis~~~ 442 (937)
T COG1025 384 KTRPMDYVSWLADNME-REPVEHTLYASLVLPRYDPKAIQERLALMT-PENARLWLISKLE 442 (937)
T ss_pred cCChHHHHHHHHHhcc-cCChhhhhchhhcccccCHHHHHHHHHhhC-ccceEEEEecCCC
Confidence 3 45566666654332 112222345567788889999999999866 8998888888654
No 9
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.97 E-value=2.2e-28 Score=230.19 Aligned_cols=360 Identities=17% Similarity=0.214 Sum_probs=284.5
Q ss_pred CccccCCCCChHHHHHHHH--hcCCeeeeeecceEEEEEEEecc-ccHHHHHHHHHHhhcCCCCChHHHHHH--------
Q 016631 1 MIFKGTEKRTARDLEEEIE--NMGGHLNAYTSREQTTYYAKVLD-KDVNNALDILADILQNSTFDQARITRE-------- 69 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~--~~g~~~~~~t~~~~~~~~~~~~~-~~l~~~l~~l~~~~~~~~~~~~~~~~~-------- 69 (386)
|+|+|+++||-++....+. +.+..+||.|+.|.|+|.+++.. +++-.++....|.+.+|.++++.|.+|
T Consensus 66 tvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~T~YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~ 145 (978)
T COG1026 66 TVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKD 145 (978)
T ss_pred HhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCcceeeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCC
Confidence 5799999999888544444 34777999999999999998775 679999999999999999999998877
Q ss_pred ------HHHHHHHHHHhhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCC
Q 016631 70 ------RDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (386)
Q Consensus 70 ------k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (386)
+.+|.+|++....+|..+++..+.+.+||+..|+....|.+..|..++.+++++||+++|.|+|+.++++||++
T Consensus 146 ~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~ 225 (978)
T COG1026 146 ESNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIP 225 (978)
T ss_pred CccceeeeEEeehhcccccCchhHHHHHHHHhhCCCccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCC
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH-hcCCCCCCCcccccccCCCCccCC--Cc---eEE--ecCCCCceEEEEEeccCCCCC-chhhHHHHHH
Q 016631 144 HEEVVEQVKKL-FTKLSADPTTASQLVANEPAIFTG--SE---VRI--IDDDIPLAQFAVAFAGASWTD-PDSIALMVMQ 214 (386)
Q Consensus 144 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~--~~~~~~~~~v~~~~~~~~~~~-~~~~~~~ll~ 214 (386)
.++....+++. +...++.. ...+.+. .+.+.. .. ..+ ...+..++.+.++|.++...+ .+..++.|+.
T Consensus 226 ~~~~L~~iee~~l~~~~k~~-~~~~i~~--~~~~~~~~~~~~~ypi~~~~~de~q~~~~lsWl~~~~~d~~~~lal~vL~ 302 (978)
T COG1026 226 TERLLDFIEEKVLRPFGKRE-LDVPIPD--QKAFKKPRRKVLEYPISFDEEDEDQGLLSLSWLGGSASDAEDSLALEVLE 302 (978)
T ss_pred HHHHHHHHHHhhhccccccc-cCCCCCc--ccccCcccccceeeccCCCCCCCceeEEEEEEecCCcccHHHHHHHHHHH
Confidence 99999999887 65555443 2221111 111111 11 112 344567888999999887655 5789999999
Q ss_pred HHcCCCCCCCCCCCCcccHHHHHhccccce-eeeeecccccCCcceeEEEeee-CcccHHHHHHHHHHHHHHhhc-CCCH
Q 016631 215 AMLGSWNKNSVGGKHMGSELAQRVGINEIA-ESMMAFNTNYKDTGLFGVYAVA-KPDCLDDLAYAIMYETTKLAY-RVSE 291 (386)
Q Consensus 215 ~iL~~~~~~~~~~~~~~s~L~~~lre~gl~-y~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~i~~l~~-~~~~ 291 (386)
.+|-+ +..++|.+.|-|.|++ +.+.+.+........|.+.+.. ..++..+..+.+.+.++++.+ |+++
T Consensus 303 ~iLl~---------~~asPl~~~liesglg~~~~~g~~~~~~~~~~f~v~~~gv~~ek~~~~k~lV~~~L~~l~~~gi~~ 373 (978)
T COG1026 303 EILLD---------SAASPLTQALIESGLGFADVSGSYDSDLKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVKNGIDK 373 (978)
T ss_pred HHHcc---------CcccHHHHHHHHcCCCcccccceeccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 99985 5689999999998888 5555545555556677766654 458999999999999999998 9999
Q ss_pred HHHHHHHHHHHHhhHhhccCc--hHHHHHHHHHHHhhCCccCH---HHHHHHHhcCCHHH--HHHHHHHhhccCC-cEEE
Q 016631 292 ADVTRARNQLKSSLLLHIDGT--SPVAEDIGRQLLTYGRRIPF---AELFARIDSVDAST--VKRVANRFIYDRD-IAIA 363 (386)
Q Consensus 292 ~el~~~k~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~vt~~d--v~~~~~~~l~~~~-~~~~ 363 (386)
+.++.++.++.-++......+ -..+......+..++++.+. ....+.|++--..+ +.++.++||-.++ .+++
T Consensus 374 ~~ie~~~~q~E~s~ke~~s~pfgl~l~~~~~~gw~~G~dp~~~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v 453 (978)
T COG1026 374 KLIEAILHQLEFSLKEVKSYPFGLGLMFRSLYGWLNGGDPEDSLRFLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTV 453 (978)
T ss_pred HHHHHHHHHHHHhhhhhcCCCccHHHHHHhccccccCCChhhhhhhHHHHHHHHHhhhcChHHHHHHHHHhhcCCccEEE
Confidence 999999999999988864444 33445555555556666543 44556666555555 9999999998777 7888
Q ss_pred EecCCCCCC
Q 016631 364 AMGPIQGLP 372 (386)
Q Consensus 364 i~gp~~~~~ 372 (386)
++.|...++
T Consensus 454 ~~~Ps~~~~ 462 (978)
T COG1026 454 IVLPSPELE 462 (978)
T ss_pred EEecChHHH
Confidence 888876543
No 10
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.1e-26 Score=221.87 Aligned_cols=354 Identities=15% Similarity=0.169 Sum_probs=275.8
Q ss_pred CccccCCCCC-hHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 016631 1 MIFKGTEKRT-ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (386)
Q Consensus 1 m~f~Gt~~~~-~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~ 79 (386)
|+|.||++|| .+++..++..+|++.||+|+.+.|+|++...++.++.+|+.+++++..|.|+++.+++|+.+|.+|++.
T Consensus 77 MlFmGS~KYP~En~y~~~lsk~gGssNA~T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~ 156 (974)
T KOG0959|consen 77 MLFMGSEKYPDENEYSKFLSKNGGSSNAYTDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEK 156 (974)
T ss_pred HHhhccccCCCcchhHHHHHhcCCccccccccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHh
Confidence 8999999998 777999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccC-----HHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHH
Q 016631 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTIT-----KEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKL 154 (386)
Q Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~-----~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~ 154 (386)
...+...+..+......-++||+++..+|..+.|.... .+.|.+||++||.+++|+++|+|+.+.+.+..++.+.
T Consensus 157 nl~~D~wr~~ql~~~l~~~~hp~~kF~tGN~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~ 236 (974)
T KOG0959|consen 157 NLNSDGWRFDQLLRSLSNPGHPYSKFSTGNKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRL 236 (974)
T ss_pred ccCcchhHHHHHHHHhcCCCCcchhccccchhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHH
Confidence 88877777777777777799999999999999999998 9999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccccCCCCccC--CCceEEecCCCCceEEEEEeccCCCC-CchhhHHHHHHHHcCCCCCCCCCCCCcc
Q 016631 155 FTKLSADPTTASQLVANEPAIFT--GSEVRIIDDDIPLAQFAVAFAGASWT-DPDSIALMVMQAMLGSWNKNSVGGKHMG 231 (386)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~ll~~iL~~~~~~~~~~~~~~ 231 (386)
|+.+++...+.+..+. .+..+ .+......+-.....+.+.|+.|+.. .-..-..+.+.+++|. +|.
T Consensus 237 F~~i~N~~~~~p~f~~--~p~~~e~~~~~~~v~pik~~~~l~is~~~p~~~~~y~~kP~~y~~hLigh----eg~----- 305 (974)
T KOG0959|consen 237 FDEISNKKKPRPVFPE--PPFLPEELKKLVRVVPIKDGRSLMISWPVPPLNHHYKSKPLRYLSHLIGH----EGP----- 305 (974)
T ss_pred cccccccCCCCCcccC--CCCChHHhCcEEEEEeccccceEEEEEecCCcccccccCcHHHHHHHhcc----CCc-----
Confidence 9999987766543332 11111 11222223333556788889988643 3355566888888885 333
Q ss_pred cHHHHHhccccceeeeeeccc-ccCCcceeEEEeeeCc---ccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhH
Q 016631 232 SELAQRVGINEIAESMMAFNT-NYKDTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLL 306 (386)
Q Consensus 232 s~L~~~lre~gl~y~~~~~~~-~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~ 306 (386)
+-|...|+.+|++-+..+... ...+.+.|.+.+.... +++++++..+.+.|..+.. +.-+.-++.....-...+.
T Consensus 306 GSL~~~Lk~~gw~~sl~a~~~~~as~~~~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~~~~~~~i~~E~~~~~~~~Fr 385 (974)
T KOG0959|consen 306 GSLLSYLKRLGWATSLEAGIPEFASGYSFFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQSAGPEKWIFKELQLISEVKFR 385 (974)
T ss_pred chHHHHHHHhhchheeecCCCccccccceEEEEEEeccccchhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhhhhhee
Confidence 457788899999888777655 3455677777775543 8889999999999998877 7766666666554444444
Q ss_pred hhc-cCchHHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecC
Q 016631 307 LHI-DGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGP 367 (386)
Q Consensus 307 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp 367 (386)
... +.+...+..++..+. .=...+.-.....+....++-|+.+... +.|.++.++++.-
T Consensus 386 f~~k~~p~~~~~~~~~nlq-~~P~~~il~~~~ll~~~~p~~i~~~~~~-L~p~n~~v~~~s~ 445 (974)
T KOG0959|consen 386 FQDKEPPMEYASEIASNLQ-YYPVEDVLTGSYLLTEFDPDLIQEVLSS-LVPSNMRVILVSR 445 (974)
T ss_pred ecccCCcHHHHHHHHhhcc-cCChHHhhcchhhhhhcChHHHHHHHHh-cCcccceeeeeee
Confidence 432 356777777765432 1111223344577888899999998875 7778777776663
No 11
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=99.95 E-value=4.2e-24 Score=180.75 Aligned_cols=354 Identities=23% Similarity=0.338 Sum_probs=267.4
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHH-HHHHHHHHHh
Q 016631 2 IFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRER-DVILREMEEV 80 (386)
Q Consensus 2 ~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k-~~~~~~~~~~ 80 (386)
.|+.|+++|...|.+..+..|+.++..++++.+.+++++++++++..+.+|.+++.+|.|.+++++... ..+..++.
T Consensus 72 ~g~~Tq~~sal~ivr~se~~GG~Lss~~tRe~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~-- 149 (429)
T KOG2583|consen 72 VGRDTQERSALKIVRESEQLGGTLSSTATRELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLA-- 149 (429)
T ss_pred cccCccccchhhhhhhhHhhCceeeeeeecceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhh--
Confidence 477899999999999999999999999999999999999999999999999999999999999999888 66665555
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (386)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 160 (386)
..+|...+.+.+++..|.+ .++.+++.+.-.+.+++.++|.+|..++|..+|++++-+| +|.+.++.+.++++ .++.
T Consensus 150 ~~t~~~~a~e~lH~aAfRn-gLgnslY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg~n-vd~~~L~~~~~~~~-~~~~ 226 (429)
T KOG2583|consen 150 YQTPYTIAIEQLHAAAFRN-GLGNSLYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVGVN-VDHDDLKQFADEYA-PIRD 226 (429)
T ss_pred hcChHHHHHHHHHHHHHhc-ccCCcccCCcccccCccHHHHHHHHHHHhhccceEEEecC-CChHHHHHHHHHhc-cccC
Confidence 4689999999999999998 8889888777789999999999999999999999999999 99999999999883 2222
Q ss_pred CCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCC-CCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc
Q 016631 161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGAS-WTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG 239 (386)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lr 239 (386)
+. +..+ .+..+.++..+....+ ..+++.+.-.+-. .+.++..+..++...|+...... .+ ++.+.+..-
T Consensus 227 ~~-~~k~----a~a~~~gGe~Rk~~~g-~~~~v~vagegAAa~~~k~~~a~av~~~~Lg~~~~~k---~~-t~~~~~aa~ 296 (429)
T KOG2583|consen 227 GL-PLKP----APAKYSGGEARKDARG-NRVHVAVAGEGAAAGNLKVLAAQAVLLAALGNSAPVK---RG-TGLLSEAAG 296 (429)
T ss_pred CC-CCCC----CCccccCCccccccCC-ceeEEEEecCcccccchHHHHHHHHHHHHHhcccccc---cc-cchHHHHHh
Confidence 11 1110 2334445555544433 4455555433332 34678888899999998631110 00 333433332
Q ss_pred cc-cceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhccCchHHHH
Q 016631 240 IN-EIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAE 317 (386)
Q Consensus 240 e~-gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~~~~~~~~~ 317 (386)
.. +..-++.++..+|.+.|+|++++..+..+..++++.....+...+. +++......+++.+........+. ...
T Consensus 297 ~a~~~~~s~sA~~a~ysDsGL~gv~~~~~~~~a~~~v~s~v~~lks~~~~~id~~~~~a~~~~l~~~~~ss~~a---~~~ 373 (429)
T KOG2583|consen 297 AAGEQGASASAFNAPYSDSGLFGVYVSAQGSQAGKVVSSEVKKLKSALVSDIDNAKVKAAIKALKASYLSSVEA---LEL 373 (429)
T ss_pred hccccCceeeeecccccCCceEEEEEEecCccHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhcchHH---HHH
Confidence 21 2344567788889999999999999998888888888888887766 777766666666665555443322 111
Q ss_pred HHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHH
Q 016631 318 DIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWF 377 (386)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~ 377 (386)
.. ... .+-......+.+.|++||..||.+.+++++. .+..++.+|.-..+|..+++
T Consensus 374 ~~--~~~-a~~~~~~d~~i~~id~Vt~sdV~~a~kk~~s-~kls~aA~Gnl~~vPY~DEL 429 (429)
T KOG2583|consen 374 AT--GSQ-ANLVSEPDAFIQQIDKVTASDVQKAAKKFLS-GKLSLAAYGNLSNVPYLDEL 429 (429)
T ss_pred hh--HHH-hcCCCChHHHHHHhccccHHHHHHHHHHhcc-CcceeeeeccccCCcccccC
Confidence 11 111 2222256789999999999999999999764 56899999999999988753
No 12
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.92 E-value=2.5e-24 Score=176.18 Aligned_cols=178 Identities=29% Similarity=0.445 Sum_probs=146.8
Q ss_pred ccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCCCC---cccccccCCCCccCCCceEEecCCCCce
Q 016631 115 TITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPT---TASQLVANEPAIFTGSEVRIIDDDIPLA 191 (386)
Q Consensus 115 ~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (386)
++|.++|++||++||.|+||+++|+||++++++.+.++++|+.|+.... .................+.....+.+.+
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQS 80 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSSE
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 4789999999999999999999999999999999999999999987642 1111111011222333344444455789
Q ss_pred EEEEEeccCCC-CCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc-cccceeeeeecccccCCcceeEEEeeeCcc
Q 016631 192 QFAVAFAGASW-TDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG-INEIAESMMAFNTNYKDTGLFGVYAVAKPD 269 (386)
Q Consensus 192 ~v~~~~~~~~~-~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lr-e~gl~y~~~~~~~~~~~~~~~~i~~~~~~~ 269 (386)
.+.++|+.++. +.++..++.+++.+|++ +++++|+..|| ++|++|+++++...+.+.+.|.+++.+.++
T Consensus 81 ~v~~~~~~~~~~~~~~~~~~~~l~~~l~~---------~~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~~~~ 151 (184)
T PF05193_consen 81 IVSIAFPGPPIKDSKDYFALNLLSSLLGN---------GMSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQVTPE 151 (184)
T ss_dssp EEEEEEEEEETGTSTTHHHHHHHHHHHHC---------STTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEEEGG
T ss_pred ccccccccccccccchhhHHHHHHHHHhc---------CccchhHHHHHhccccceEEEeeeeccccceEEEEEEEcCcc
Confidence 99999999887 88999999999999995 46899999999 579999999997777788999999999999
Q ss_pred cHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHH
Q 016631 270 CLDDLAYAIMYETTKLAY-RVSEADVTRARNQL 301 (386)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~ 301 (386)
++.++++.+.+.++++.+ |++++||+++|++|
T Consensus 152 ~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 152 NLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp GHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 999999999999999999 89999999999875
No 13
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=9.9e-23 Score=183.10 Aligned_cols=364 Identities=16% Similarity=0.173 Sum_probs=276.0
Q ss_pred ccccCCCCChHH-HHHHHHh-cCCeeeeeecceEEEEEEEecc-ccHHHHHHHHHHhhcCCCCChHHHHHH---------
Q 016631 2 IFKGTEKRTARD-LEEEIEN-MGGHLNAYTSREQTTYYAKVLD-KDVNNALDILADILQNSTFDQARITRE--------- 69 (386)
Q Consensus 2 ~f~Gt~~~~~~~-l~~~l~~-~g~~~~~~t~~~~~~~~~~~~~-~~l~~~l~~l~~~~~~~~~~~~~~~~~--------- 69 (386)
+..|+.+||-++ +.+.|.. ....+||+|..|+|.|-+.+.+ .++..+.+...|....|.+.+.+|.+|
T Consensus 99 vLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dp 178 (998)
T KOG2019|consen 99 VLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDP 178 (998)
T ss_pred eeeccCcCcccChHHHHHHHHHHHHHhhccCCCcceeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCC
Confidence 357999999544 7777774 4677899999999999997664 789999999999999999888888776
Q ss_pred ---------HHHHHHHHHHhhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeC
Q 016631 70 ---------RDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 140 (386)
Q Consensus 70 ---------k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G 140 (386)
|.+|.+|++..-.+|...+...+.+.++|.+.|+....|++..|-.++.++|++||+++|.|+|..++..|
T Consensus 179 sd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYG 258 (998)
T KOG2019|consen 179 SDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYG 258 (998)
T ss_pred CCCcccceeeeeeeecccccccChhHHHHHHHHHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeec
Confidence 78999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcccccccCCCCccC-CCceEE------ecCCCCceEEEEEeccCC-CCCchhhHHHH
Q 016631 141 AVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFT-GSEVRI------IDDDIPLAQFAVAFAGAS-WTDPDSIALMV 212 (386)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~v~~~~~~~~-~~~~~~~~~~l 212 (386)
|++.++...+++..|....+.+...... ....+. ...+.. ...+..++...+.|-.+. .+..+..++-+
T Consensus 259 n~Pl~~~l~~l~e~~~~~sk~~~s~kv~---~qk~f~kp~rvve~~p~d~~~~p~Kq~~~s~s~L~~~p~d~~etfaL~~ 335 (998)
T KOG2019|consen 259 NFPLEDLLKQLEEDFSPFSKRELSSKVT---FQKLFDKPRRVVEKGPADPGDLPKKQTKCSNSFLSNDPLDTYETFALKV 335 (998)
T ss_pred CchHHHHHHHHHHhhcccccccccCccc---cccccccCceeeeecCCCCCCCccceeEEEEEeecCCchhHHHHHHHHH
Confidence 9999999999988877664433221111 111111 111111 123345666777777664 45578899999
Q ss_pred HHHHcCCCCCCCCCCCCcccHHHHHhccccce--eeeeecccccCCcceeEEEeeeCc-ccHHHHHHHHHHHHHHhhc-C
Q 016631 213 MQAMLGSWNKNSVGGKHMGSELAQRVGINEIA--ESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAY-R 288 (386)
Q Consensus 213 l~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~--y~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~i~~l~~-~ 288 (386)
+.+++-+ +.+|++++.|-|.|+. +++++.+...-..+.|++-...-. ++++.+.+.+...+..+.. +
T Consensus 336 L~~Ll~~---------gpsSp~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~g 406 (998)
T KOG2019|consen 336 LSHLLLD---------GPSSPFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETG 406 (998)
T ss_pred HHHHhcC---------CCccHHHHHHHHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999974 6799999999997665 567777776666788888776654 8899999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHhhHhhccC-chHHHHHHHHHHHhhCCccCHHH-------HHHHHhcCCHHHHHHHHHHhhccCC-
Q 016631 289 VSEADVTRARNQLKSSLLLHIDG-TSPVAEDIGRQLLTYGRRIPFAE-------LFARIDSVDASTVKRVANRFIYDRD- 359 (386)
Q Consensus 289 ~~~~el~~~k~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~i~~vt~~dv~~~~~~~l~~~~- 359 (386)
|+.+-++....++..++..+... --..+..+...+....+|..+-. +...+..-+..=++..+++|+..++
T Consensus 407 fd~drieAil~qiEislk~qst~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~lIkkYilnn~h 486 (998)
T KOG2019|consen 407 FDNDRIEAILHQIEISLKHQSTGFGLSLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQPLIKKYILNNPH 486 (998)
T ss_pred cchHHHHHHHHHhhhhhhccccchhHHHHHHHhhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHHHHHHHHhcCCc
Confidence 99999999888887777664332 12233444444444555654322 3344555567778999999998776
Q ss_pred cEEEEecCCCCCCChHHH
Q 016631 360 IAIAAMGPIQGLPDYNWF 377 (386)
Q Consensus 360 ~~~~i~gp~~~~~~~~~~ 377 (386)
.++.-..|....+...+-
T Consensus 487 ~~t~smqpd~e~~~~~~~ 504 (998)
T KOG2019|consen 487 CFTFSMQPDPEFAEKLEQ 504 (998)
T ss_pred eEEEEecCCchhhHHHHH
Confidence 445555566666665443
No 14
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.6e-23 Score=183.60 Aligned_cols=366 Identities=17% Similarity=0.225 Sum_probs=271.3
Q ss_pred CccccCCCCChHHHHHHHHhc-CCeeeeeecceEEEEEEEec-cccHHHHHHHHHHhhcCCCCChHHHHHH---------
Q 016631 1 MIFKGTEKRTARDLEEEIENM-GGHLNAYTSREQTTYYAKVL-DKDVNNALDILADILQNSTFDQARITRE--------- 69 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~-g~~~~~~t~~~~~~~~~~~~-~~~l~~~l~~l~~~~~~~~~~~~~~~~~--------- 69 (386)
|.|+|+++||.+.+.+.++.. -+..||.|+.|+|.|++++. .+.+-.+|....+-+..|-++++.+-.|
T Consensus 65 L~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~YtLStag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~ 144 (1022)
T KOG0961|consen 65 LVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYTLSTAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGN 144 (1022)
T ss_pred HhhhccccCCcccHHHHhhcchhcccccccccCcceEEeecccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCC
Confidence 579999999999998888876 46699999999999999876 4669999999999999999999999877
Q ss_pred -HHHHHHHHHHhhCChHHHHHHHHHHhhcC-CCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHH
Q 016631 70 -RDVILREMEEVEGQTEEVIFDHLHATAFQ-YTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEV 147 (386)
Q Consensus 70 -k~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~ 147 (386)
+.++..|++..+......+.+.....+|| .++|...+.|..+.++.+|.+.+++||+++|.++||+++|+|.++.+++
T Consensus 145 d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~eTGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~l 224 (1022)
T KOG0961|consen 145 DAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVETGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQL 224 (1022)
T ss_pred ccceeehhhhhhhcccchhhhhhhheeecCCCCCceeccCCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHH
Confidence 57888999998887788888888899997 7788899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCc-----cccccc--C--CCCccCCCceEEecCCCCceEEEEEeccCCCCC-chhhHHHHHHHHc
Q 016631 148 VEQVKKLFTKLSADPTT-----ASQLVA--N--EPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTD-PDSIALMVMQAML 217 (386)
Q Consensus 148 ~~~~~~~~~~~~~~~~~-----~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~ll~~iL 217 (386)
.......-..++..... .+|+.. . ..+....+.+.....+..+..|.++|.++++++ ....+++++..+|
T Consensus 225 L~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~t~~tVefp~~Des~G~v~~aW~g~s~sD~~t~~a~~vL~dyl 304 (1022)
T KOG0961|consen 225 LEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKESTVHTVEFPTDDESRGAVEVAWFGHSPSDLETHSALHVLFDYL 304 (1022)
T ss_pred HHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCccceeeeecCCcccccceEEEEEcCCCHHHhhhHHHHHHHHHHh
Confidence 88777665544432211 111110 0 112222233444555677888999999988765 5667899999999
Q ss_pred CCCCCCCCCCCCcccHHHHHhcc--ccceeeeeecccccCCcceeEEEeeeCc-ccHHHHHHHHHHHHHHhhcCCCHHHH
Q 016631 218 GSWNKNSVGGKHMGSELAQRVGI--NEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAYRVSEADV 294 (386)
Q Consensus 218 ~~~~~~~~~~~~~~s~L~~~lre--~gl~y~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~el 294 (386)
.+ ..-+++.+.+-| ..++-+++...... -...+.+.+..-| +++.+....+.+.+.+-. .|+-+-.
T Consensus 305 s~---------savapf~~~fVeieDP~assv~f~~~~~-vrc~i~L~f~gVP~EKi~~~~~k~l~~l~et~-~iDm~Rm 373 (1022)
T KOG0961|consen 305 SN---------SAVAPFQKDFVEIEDPLASSVSFHIAEG-VRCDIRLNFAGVPVEKIDECAPKFLDKLVETA-NIDMERM 373 (1022)
T ss_pred cc---------ccccccccceEEecCccccceeeeeecc-cceeEEEeecCCcHHHhhhhhHHHHHHHHHhc-ccCHHHH
Confidence 86 346778887764 58887776655433 3344555555544 888888887777775433 5776666
Q ss_pred HHHHHHHHHhhHhhcc--CchHHHHHHHHHHHhhCCcc--CH------HHHHHHHhcCCHHHHHHHHHHhhccCCcEEEE
Q 016631 295 TRARNQLKSSLLLHID--GTSPVAEDIGRQLLTYGRRI--PF------AELFARIDSVDASTVKRVANRFIYDRDIAIAA 364 (386)
Q Consensus 295 ~~~k~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i 364 (386)
.....+.+-++....+ .+...+.-+....+ +|..+ +. -++.+.+......|..++.++||..++.++++
T Consensus 374 ~~~i~~t~~~yL~nlE~n~~s~fms~ii~d~~-ygnedg~~l~~~lk~l~~~~~L~~w~~kdW~~Llnk~Fven~s~tVi 452 (1022)
T KOG0961|consen 374 GYLIDQTILNYLVNLETNAPSDFMSHIIGDQL-YGNEDGELLKKRLKELDFLKKLKSWPAKDWVQLLNKYFVENPSATVI 452 (1022)
T ss_pred HHHHHHHHHHHHHhhhcCChHHHHHHHhhhhh-ccCcchhHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhccCCCeEEE
Confidence 6666666666665544 35666666666554 44432 22 13568889999999999999999987777777
Q ss_pred ecCCCCCCChHHHHHh
Q 016631 365 MGPIQGLPDYNWFRRR 380 (386)
Q Consensus 365 ~gp~~~~~~~~~~~~~ 380 (386)
.-|... ..+.++++
T Consensus 453 a~Ps~e--m~e~i~kE 466 (1022)
T KOG0961|consen 453 AVPSEE--MVEKIAKE 466 (1022)
T ss_pred ecCcHH--HHHHHHHH
Confidence 777543 33444433
No 15
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.87 E-value=3.5e-20 Score=175.37 Aligned_cols=344 Identities=17% Similarity=0.229 Sum_probs=234.7
Q ss_pred ccCCCCChHHHHHHHHhcCCeeeee----ecc-------eEEEEEEEeccccHHHHHHHHHHhhcCCCC-ChHHHHHHHH
Q 016631 4 KGTEKRTARDLEEEIENMGGHLNAY----TSR-------EQTTYYAKVLDKDVNNALDILADILQNSTF-DQARITRERD 71 (386)
Q Consensus 4 ~Gt~~~~~~~l~~~l~~~g~~~~~~----t~~-------~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~k~ 71 (386)
.||.++++.++.+.++.+.+.++++ ++. ..+.+++.+.+++.+.+++++.+++.++.| |.+++....+
T Consensus 578 lgt~~~~y~e~~~~i~~~TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~ 657 (978)
T COG1026 578 LGTETYSYKELLNQIERHTGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLE 657 (978)
T ss_pred cCCCCcCHHHHHHHHHHHhCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHH
Confidence 6999999999999999874433333 322 578899999999999999999999999999 4555555555
Q ss_pred HHHHHHHHh-hCChHHHHHHHHHHhhcCCCCCCCCCCC--CchhhcccC-----------HHHHHHHHHhhCCCCCeEEE
Q 016631 72 VILREMEEV-EGQTEEVIFDHLHATAFQYTPLGRTILG--PAQNIKTIT-----------KEHLQNYIHTHYTAPRMVIA 137 (386)
Q Consensus 72 ~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~g--~~~~l~~i~-----------~~~l~~~~~~~~~~~~~~l~ 137 (386)
..++.+... .+++...+.......++....+.....| ..+-|.++. .+.|++.+++.+..+|+.+.
T Consensus 658 q~~~~l~~~vr~sG~~~A~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~ 737 (978)
T COG1026 658 QYLSDLTSSVRNSGHSIASSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIA 737 (978)
T ss_pred HHHhhhHHhhhccchHHHHHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEE
Confidence 555555553 3446666666665555554333322211 122222221 25688889999999999888
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCCC-----CCcccccccCCCCccC-CCceEEecCCCCceEEEEEeccCCCCCchhhHHH
Q 016631 138 ASGAVKHEEVVEQVKKLFTKLSAD-----PTTASQLVANEPAIFT-GSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALM 211 (386)
Q Consensus 138 i~G~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 211 (386)
+.|+.+ .+.+.+++.|.++... ..+..+..+ ...... .....+...+.+...+++.+...++.+|+.+++.
T Consensus 738 i~~~~~--~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ii~~p~a~~~l~fs~~~~~y~hpd~~~l~ 814 (978)
T COG1026 738 IIGDID--KILDLLENPLLKFLEHLLPGFELPTPPKNP-HLDLISSLSEATIIPSPVAYNALAFSIGGLPYTHPDYAALQ 814 (978)
T ss_pred EecChh--hhHHHHHHHhhhhhcccCcccccCCCCCCc-chhhhccccceEEeccHHHHHHHhhhccCCCCCCccchHHH
Confidence 889775 3334444444433321 111111110 111111 2223333333333445555557789999999999
Q ss_pred HHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-CCC
Q 016631 212 VMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVS 290 (386)
Q Consensus 212 ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~ 290 (386)
|++++|+ .++||..+|++|++||.+++.. ...|.|.++...+| ++-+..+.+.+.++.+.. .++
T Consensus 815 vls~~L~------------~~~lw~~IR~~GGAYGa~as~~--~~~G~f~f~sYRDP-n~~kt~~v~~~~v~~l~s~~~~ 879 (978)
T COG1026 815 VLSEYLG------------SGYLWNKIREKGGAYGASASID--ANRGVFSFASYRDP-NILKTYKVFRKSVKDLASGNFD 879 (978)
T ss_pred HHHHHhc------------cchhHHHHHhhccccccccccc--cCCCeEEEEecCCC-cHHHHHHHHHHHHHHHHcCCCC
Confidence 9999998 6999999999999999888875 45688988888887 588999999999999988 999
Q ss_pred HHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCH-HHHHHHHhcCCHHHHHHHHHHhhcc--CCcEEEEecC
Q 016631 291 EADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPF-AELFARIDSVDASTVKRVANRFIYD--RDIAIAAMGP 367 (386)
Q Consensus 291 ~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vt~~dv~~~~~~~l~~--~~~~~~i~gp 367 (386)
+.++++++-..++.+.... +|......-.... ..|...+. +.+.+.+.+||++||..++++|+.+ +.-++++++.
T Consensus 880 ~~d~~~~ilg~i~~~d~p~-sp~~~~~~s~~~~-~sg~~~~~~qa~re~~l~vt~~di~~~~~~yl~~~~~e~~i~~~~~ 957 (978)
T COG1026 880 ERDLEEAILGIISTLDTPE-SPASEGSKSFYRD-LSGLTDEERQAFRERLLDVTKEDIKEVMDKYLLNFSSENSIAVFAG 957 (978)
T ss_pred HHHHHHHHHHhhccccccc-CCcceehhhHHHH-HhcCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccceEEEEec
Confidence 9999999999999888764 4444433332222 34554444 6789999999999999999999984 4445666554
No 16
>PTZ00432 falcilysin; Provisional
Probab=99.86 E-value=2.9e-19 Score=180.07 Aligned_cols=351 Identities=13% Similarity=0.097 Sum_probs=237.7
Q ss_pred ccCCCCChHHHHHHHHhcCCeeeee----ec------------ceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHH-H
Q 016631 4 KGTEKRTARDLEEEIENMGGHLNAY----TS------------REQTTYYAKVLDKDVNNALDILADILQNSTFDQAR-I 66 (386)
Q Consensus 4 ~Gt~~~~~~~l~~~l~~~g~~~~~~----t~------------~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~-~ 66 (386)
.||+++++.++...+...-+.++++ ++ ...+.++++++.++++.+++++.+++.++.|++.. +
T Consensus 711 ~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl 790 (1119)
T PTZ00432 711 NGTDKLSSEEFTYKREKNLGGLSASTAFYSETNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKG 790 (1119)
T ss_pred cCCCCCCHHHHHHHHHHhCCCeEEEEEEeccccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 6999999999999999875544433 22 23688899999999999999999999999998744 6
Q ss_pred HHHHHHHHHHHHHhh-CChHHHHHHHHHHhhcCCCCCCCCCCC---CchhhcccC-----------HHHHHHHHHhhCCC
Q 016631 67 TRERDVILREMEEVE-GQTEEVIFDHLHATAFQYTPLGRTILG---PAQNIKTIT-----------KEHLQNYIHTHYTA 131 (386)
Q Consensus 67 ~~~k~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~g---~~~~l~~i~-----------~~~l~~~~~~~~~~ 131 (386)
....+..+..+.+.. .++...+...+...+.+.. +....++ ....|+.+. .+.|.+.+++.+.+
T Consensus 791 ~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~S~~~-~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~ 869 (1119)
T PTZ00432 791 VEILKRKINGMKTVFSSKGHKFALKRMKSKFSVSD-YADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSM 869 (1119)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCHHH-HHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCc
Confidence 555566666665533 2444444433332221110 1111111 222233221 24578889999999
Q ss_pred CCeEEEEeCCC-CHHHHHHHHHHHhcCCCCC----C--CcccccccC--CCCccCC-CceEEecCCCCceEEEEEeccCC
Q 016631 132 PRMVIAASGAV-KHEEVVEQVKKLFTKLSAD----P--TTASQLVAN--EPAIFTG-SEVRIIDDDIPLAQFAVAFAGAS 201 (386)
Q Consensus 132 ~~~~l~i~G~~-~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~ 201 (386)
+|+.+.|+|+. ..+.+.+.+..++..++.. . ....++... ....+.. ........+....++..+.+...
T Consensus 870 ~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~V~yv~~~~~~~~ 949 (1119)
T PTZ00432 870 KNLTVNVTGDSELLDSLLDDSTTFLKKLSSTFKENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPTRVNFVGMGGKLFD 949 (1119)
T ss_pred CCcEEEEEeCHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccCCcccceEEEccCceeEEEEeccccc
Confidence 99999999987 4556666666677766421 1 111111100 0000110 01112222445556666644445
Q ss_pred CCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHH
Q 016631 202 WTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYE 281 (386)
Q Consensus 202 ~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 281 (386)
..++..+++.|+..+|. .+.||+.+|++|++||+++... ..|.|.++...+| ++.++++.+.+.
T Consensus 950 ~~~~~~~~l~Vl~~~L~------------~~yLw~~IR~~GGAYG~~~~~~---~~G~~~f~SYRDP-n~~~Tl~~f~~~ 1013 (1119)
T PTZ00432 950 KSDKVDGSFQVIVHYLK------------NSYLWKTVRMSLGAYGVFADLL---YTGHVIFMSYADP-NFEKTLEVYKEV 1013 (1119)
T ss_pred CCCccCHHHHHHHHHHc------------cccchHHHcccCCccccCCccC---CCCeEEEEEecCC-CHHHHHHHHHHH
Confidence 56677899999999998 6999999999999999886553 3588888888887 577888888888
Q ss_pred HHHhhc---CCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccC-HHHHHHHHhcCCHHHHHHHHHHhhcc
Q 016631 282 TTKLAY---RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIP-FAELFARIDSVDASTVKRVANRFIYD 357 (386)
Q Consensus 282 i~~l~~---~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vt~~dv~~~~~~~l~~ 357 (386)
.+.+.. .+|++++++++-..+..++.+. +|..........+ ..|.... .+++++.|-++|++||+++|..+...
T Consensus 1014 ~~~l~~~~~~~~~~~l~~~iig~~~~~D~p~-~p~~~g~~~~~~~-l~g~t~e~rq~~R~~il~~t~edi~~~a~~~~~~ 1091 (1119)
T PTZ00432 1014 ASALREAAETLTDKDLLRYKIGKISNIDKPL-HVDELSKLALLRI-IRNESDEDRQKFRKDILETTKEDFYRLADLMEKS 1091 (1119)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhccCCCC-ChHHHHHHHHHHH-HcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888766 3999999999999999999864 5666665554443 3555443 57899999999999999999999874
Q ss_pred -CCcEEEEecCCCCCCC
Q 016631 358 -RDIAIAAMGPIQGLPD 373 (386)
Q Consensus 358 -~~~~~~i~gp~~~~~~ 373 (386)
+.-.++|+|++.++.+
T Consensus 1092 ~~~~~~~v~g~~~~~~~ 1108 (1119)
T PTZ00432 1092 KEWEKVIAVVNSKTSDT 1108 (1119)
T ss_pred hccCeEEEEECHHHhhh
Confidence 3357888888776544
No 17
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.6e-17 Score=156.95 Aligned_cols=328 Identities=10% Similarity=0.074 Sum_probs=245.1
Q ss_pred CCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh-hCChHHHHHHHHHHhhcCCC
Q 016631 22 GGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV-EGQTEEVIFDHLHATAFQYT 100 (386)
Q Consensus 22 g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~ 100 (386)
|.+++...+.+++.++++|.++.++.++..+.+.+....++++.++..|+.+.++++.. ...|...+.+.+...+-+.+
T Consensus 570 G~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a~~~~p~~~~~~~l~~l~~~~~ 649 (937)
T COG1025 570 GLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNALTGKPYRQALDGLTGLLQVPY 649 (937)
T ss_pred ceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHhhhhhCCCC
Confidence 77888888889999999999999999999999999999999999999999999999994 57799888888876665542
Q ss_pred CCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCCCCcccccccCCCCccCCCc
Q 016631 101 PLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSE 180 (386)
Q Consensus 101 ~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (386)
.+.....+.++.++.+++..|...++++....+.|.|++..+++.+..+.....++.......+.+. ......+..
T Consensus 650 ---~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~~~s~~~~~~~-~~~~~~~~~ 725 (937)
T COG1025 650 ---WSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPAIGSTWYRNPS-VYLLKGGTR 725 (937)
T ss_pred ---cCHHHHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcccCCcccCCCc-eeccCCCee
Confidence 2222356778899999999999999999999999999999999988887766666543331111110 011111112
Q ss_pred eEEecCCCCceEEEEEeccCCCC-CchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc-cccceeeeeecccccCCcc
Q 016631 181 VRIIDDDIPLAQFAVAFAGASWT-DPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG-INEIAESMMAFNTNYKDTG 258 (386)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lr-e~gl~y~~~~~~~~~~~~~ 258 (386)
......+.+.+...+.+....++ .++.+...++.+++ .-++|..|| |++|+|-|.+......+..
T Consensus 726 ~~e~~~~~~~~an~~i~~~~~~~~~~~~a~s~Ll~~l~-------------~~~ff~~LRTkeQLGY~Vfs~~~~v~~~~ 792 (937)
T COG1025 726 IFETVGGESDSANAAILYPQQYDEIKSSALSSLLGQLI-------------HPWFFDQLRTKEQLGYAVFSGPREVGRTP 792 (937)
T ss_pred EeeeccCCcccccceeEeccccchHHHHHHHHHHHHHH-------------hHHhHHHhhhhhhcceEEEecceeecCcc
Confidence 22222233333333333333343 34445556777777 488999999 6899999999998887777
Q ss_pred eeEEEeeeCc---ccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCc-cC-HH
Q 016631 259 LFGVYAVAKP---DCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRR-IP-FA 333 (386)
Q Consensus 259 ~~~i~~~~~~---~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 333 (386)
...++++++. +...+.++.+.+..+....++++++|+..|..+++++.....+....+.+++. .+..|.- ++ .+
T Consensus 793 gi~f~vqS~~~~p~~L~~r~~~F~~~~~~~l~~ms~e~Fe~~k~alin~il~~~~nl~e~a~r~~~-~~~~g~~~Fd~~e 871 (937)
T COG1025 793 GIGFLVQSNSKSPSYLLERINAFLETAEPELREMSEEDFEQIKKALINQILQPPQNLAEEASRLWK-AFGRGNLDFDHRE 871 (937)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHccCCCHHHHHHHHHH-HhccCCCCcCcHH
Confidence 7777887765 34555566666655554449999999999999999999999999999999984 4444442 33 46
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhccC---CcEEEEecC
Q 016631 334 ELFARIDSVDASTVKRVANRFIYDR---DIAIAAMGP 367 (386)
Q Consensus 334 ~~~~~i~~vt~~dv~~~~~~~l~~~---~~~~~i~gp 367 (386)
...+.++.+|.+++.+++...+... .+.+.|.|+
T Consensus 872 k~i~~vk~LT~~~l~~f~~~~l~~~~g~~l~~~i~g~ 908 (937)
T COG1025 872 KKIEAVKTLTKQKLLDFFENALSYEQGSKLLSHIRGQ 908 (937)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhcccccceeeeeeecc
Confidence 7899999999999999999988754 355667773
No 18
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-17 Score=150.30 Aligned_cols=345 Identities=16% Similarity=0.168 Sum_probs=234.9
Q ss_pred ccccCCCCChHHHHHHHHhcC--Ceeeeeecc--------eEEEEEEEeccccHHHHHHHHHHhhcCCCCCh-HHHHHHH
Q 016631 2 IFKGTEKRTARDLEEEIENMG--GHLNAYTSR--------EQTTYYAKVLDKDVNNALDILADILQNSTFDQ-ARITRER 70 (386)
Q Consensus 2 ~f~Gt~~~~~~~l~~~l~~~g--~~~~~~t~~--------~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~~~~~~k 70 (386)
+-.||+..+..++.+.+..+. ++++..+.. ..+.+...+...+++.+++++..++.++.|++ +.|+...
T Consensus 610 l~lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlv 689 (998)
T KOG2019|consen 610 LNLGTGDLSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLV 689 (998)
T ss_pred HhcCCCcccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHH
Confidence 347999999999999999884 444443332 34667777888899999999999999999984 4455555
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHH-hhcCCCCCCCCCCCCchhhccc------C-------HHHHHHHHHhhCCCCCeEE
Q 016631 71 DVILREMEEVEGQTEEVIFDHLHA-TAFQYTPLGRTILGPAQNIKTI------T-------KEHLQNYIHTHYTAPRMVI 136 (386)
Q Consensus 71 ~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~~~~~~~~g~~~~l~~i------~-------~~~l~~~~~~~~~~~~~~l 136 (386)
....+++.+.-.+ .......++. +.+.....-...+|-.+.++=+ . .+.|.+..+-+...++|.+
T Consensus 690 k~s~s~~~n~i~d-sGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~ 768 (998)
T KOG2019|consen 690 KQSASRMTNGIAD-SGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIV 768 (998)
T ss_pred HHHHHHhhccCCc-ccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEE
Confidence 5555555553222 1222222221 1111111112223333332211 1 2346666677778899999
Q ss_pred EEeCC-CCHHHHHHHHHHHhcCCCCC-CCcccccccCCCCccC-CC-ceEEecCCCCceEEEEEeccCCCCCchhhHHHH
Q 016631 137 AASGA-VKHEEVVEQVKKLFTKLSAD-PTTASQLVANEPAIFT-GS-EVRIIDDDIPLAQFAVAFAGASWTDPDSIALMV 212 (386)
Q Consensus 137 ~i~G~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 212 (386)
.|..+ .....+++.+++++..+|.. +...... .-+..+ +. .+.+..+--+..++.-+..+.++++++.+.+.|
T Consensus 769 ~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~st---~d~r~p~~~~~i~~~~P~fqvnyvgka~~~vpyt~~d~asl~v 845 (998)
T KOG2019|consen 769 NITADPKQLTNVEKAVEKFLDSLPRENPSGSKST---WDARLPLRSEAIRVVIPTFQVNYVGKAGLGVPYTHPDGASLQV 845 (998)
T ss_pred EEecCcccchhHHHHHHHHHHhccccCCCCCccC---ccccCCCCceeEEEeccccchhhhhhhcccccCCCCCCcHHHH
Confidence 99876 57788999999999998852 2222111 111111 11 222333333455666677788899999999999
Q ss_pred HHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-CCCH
Q 016631 213 MQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSE 291 (386)
Q Consensus 213 l~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~ 291 (386)
++.+|. +..||.++||+|.+|+-++.+. ...|+|.++...+| +.-+.++.+...-+-++. .+++
T Consensus 846 lS~~lt------------~k~Lh~evRekGGAYGgg~s~~--sh~GvfSf~SYRDp-n~lktL~~f~~tgd~~~~~~~~~ 910 (998)
T KOG2019|consen 846 LSKLLT------------NKWLHDEVREKGGAYGGGCSYS--SHSGVFSFYSYRDP-NPLKTLDIFDGTGDFLRGLDVDQ 910 (998)
T ss_pred HHHHHH------------HHHHHHHHHHhcCccCCccccc--cccceEEEEeccCC-chhhHHHhhcchhhhhhcCCccc
Confidence 999997 6999999999999998877765 45799999888888 466778888887777777 8999
Q ss_pred HHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCH-HHHHHHHhcCCHHHHHHHHHHhhccCC--cEEEEecCC
Q 016631 292 ADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPF-AELFARIDSVDASTVKRVANRFIYDRD--IAIAAMGPI 368 (386)
Q Consensus 292 ~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vt~~dv~~~~~~~l~~~~--~~~~i~gp~ 368 (386)
+++++||-..+....... .|.... +.+ +..|..+.. +...+.|-+++..|+.+++.+|+.... ..+++.||+
T Consensus 911 ~dldeAkl~~f~~VDap~-~P~~kG--~~~--fl~gvtDemkQarREqll~vSl~d~~~vae~yl~~~~~~~~vav~g~E 985 (998)
T KOG2019|consen 911 QDLDEAKLGTFGDVDAPQ-LPDAKG--LLR--FLLGVTDEMKQARREQLLAVSLKDFKAVAEAYLGVGDKGVAVAVAGPE 985 (998)
T ss_pred cchhhhhhhhcccccCCc-CCcccc--hHH--HHhcCCHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCcceEEEeeCcc
Confidence 999999999999888754 333222 222 345666555 567899999999999999999987554 556777776
Q ss_pred CC
Q 016631 369 QG 370 (386)
Q Consensus 369 ~~ 370 (386)
..
T Consensus 986 ~~ 987 (998)
T KOG2019|consen 986 DI 987 (998)
T ss_pred Cc
Confidence 64
No 19
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=3.2e-16 Score=150.73 Aligned_cols=321 Identities=10% Similarity=0.109 Sum_probs=243.2
Q ss_pred cCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH-hhCChHHHHHHHHHHhhcCC
Q 016631 21 MGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE-VEGQTEEVIFDHLHATAFQY 99 (386)
Q Consensus 21 ~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~ 99 (386)
.|..+..+.+..+..+++.+.++++..+++.+.+.+.+..++++.|+..++.+..++++ ...+|...+.+...-. ...
T Consensus 576 aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n~~~~~p~~~a~~~~~ll-l~~ 654 (974)
T KOG0959|consen 576 AGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRNHAFDNPYQLANDYLLLL-LEE 654 (974)
T ss_pred ccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHH-hhc
Confidence 48888999999999999999999999999999999999999999999999999999999 4566666666555444 444
Q ss_pred CCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCCCCccccc-----ccCCCC
Q 016631 100 TPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQL-----VANEPA 174 (386)
Q Consensus 100 ~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 174 (386)
..+. .....+.++.++++++..|...++++-.+.++|.||++.+++.++++.....++.......+. .+....
T Consensus 655 ~~W~--~~e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l~~~~~~~~p~~~~~~~~~~~~ 732 (974)
T KOG0959|consen 655 SIWS--KEELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDILKSAAPNSRPLFRSEHLPRREI 732 (974)
T ss_pred cccc--hHHHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhhhccCCCCccccccccCcccce
Confidence 3333 333667888899999999999999999999999999999999998777766662211111111 000111
Q ss_pred ccC-CCceEEe---cCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc-cccceeeeee
Q 016631 175 IFT-GSEVRII---DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG-INEIAESMMA 249 (386)
Q Consensus 175 ~~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lr-e~gl~y~~~~ 249 (386)
.++ +...... ....+.+.+.+.+.+...+..+.+.+.++..++. .++|+.|| +.+++|-|.+
T Consensus 733 ~lp~G~~~~~~~~~n~~~~ns~i~~~~Q~~~~~~~~~~~~~L~~~li~-------------ep~Fd~LRTkeqLGYiv~~ 799 (974)
T KOG0959|consen 733 QLPNGDYYFYRHLLNKTDDNSCIEVYYQIGVQDTRDNAVLGLLEQLIK-------------EPAFDQLRTKEQLGYIVST 799 (974)
T ss_pred eccCCceEEEEcccccCCCCceEEEEEEcccchhHHHHHHHHHHHHhc-------------cchHHhhhhHHhhCeEeee
Confidence 122 2222221 2233566778878765566678888899999995 78999999 5688888887
Q ss_pred cccccCCcceeEEEeeeC--cccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhC
Q 016631 250 FNTNYKDTGLFGVYAVAK--PDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYG 327 (386)
Q Consensus 250 ~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (386)
......+...+.+.+++. ++.++..++.+.+.+.+....+++++|+.-+..++........+.......+|.......
T Consensus 800 ~~r~~~G~~~~~i~Vqs~~~~~~le~rIe~fl~~~~~~i~~m~~e~Fe~~~~~lI~~~~ek~~~l~~e~~~~w~ei~~~~ 879 (974)
T KOG0959|consen 800 GVRLNYGTVGLQITVQSEKSVDYLEERIESFLETFLEEIVEMSDEEFEKHKSGLIASKLEKPKNLSEESSRYWDEIIIGQ 879 (974)
T ss_pred eeeeecCcceeEEEEccCCCchHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHhhcCcchhHHHHHHHHHHHhhh
Confidence 766555555555555543 366777777777777665558999999999999999999988888888888888876666
Q ss_pred CccCH-HHHHHHHhcCCHHHHHHHHHHhhcc
Q 016631 328 RRIPF-AELFARIDSVDASTVKRVANRFIYD 357 (386)
Q Consensus 328 ~~~~~-~~~~~~i~~vt~~dv~~~~~~~l~~ 357 (386)
..++. +...+.++.+|.+|+-.++..++..
T Consensus 880 y~f~r~~~~v~~l~~i~k~~~i~~f~~~~~~ 910 (974)
T KOG0959|consen 880 YNFDRDEKEVEALKKITKEDVINFFDEYIRK 910 (974)
T ss_pred hcchhhHHHHHHHHhhhHHHHHHHHHhhccc
Confidence 65554 6778889999999999999998874
No 20
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.71 E-value=8.7e-17 Score=126.32 Aligned_cols=109 Identities=43% Similarity=0.820 Sum_probs=105.4
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (386)
|+|+||++++..++.+.++..|+.++++|+.+++.|++++++++++.+|++|.+++.+|.|++++|+++|+.+..+++..
T Consensus 40 l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~ 119 (149)
T PF00675_consen 40 LLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVLSEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEI 119 (149)
T ss_dssp HTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEEGGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEecccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCCC
Q 016631 81 EGQTEEVIFDHLHATAFQYTPLGRTILGP 109 (386)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~ 109 (386)
..+|...+...+.+.+|.++||++++.|+
T Consensus 120 ~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 120 KENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp TTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred HCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 99999999999999999999999998876
No 21
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.1e-14 Score=128.92 Aligned_cols=333 Identities=15% Similarity=0.151 Sum_probs=219.9
Q ss_pred ChHHHHHHHHhcCCeeeee-----ecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhhCCh
Q 016631 10 TARDLEEEIENMGGHLNAY-----TSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEGQT 84 (386)
Q Consensus 10 ~~~~l~~~l~~~g~~~~~~-----t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~p 84 (386)
+.+++.+.+.+..++.+.. +..+-+.+.+++..++.+....++...+....|+++++....+..+.++..++.+.
T Consensus 607 s~~~v~~~~~s~~id~si~~g~~G~~~~lvn~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg 686 (1022)
T KOG0961|consen 607 SADDVAKHFTSDLIDHSIQVGVSGLYDRLVNLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDG 686 (1022)
T ss_pred hHHHHHHHHHhhhhhhhhcccccccchhheeEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCc
Confidence 4567777776655443333 34578899999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhhcCCCCCCCC--CCCCchhhcccCH----------HHHHHHHHhhCCCCCeEEEEeCCCCH-HH-HHHH
Q 016631 85 EEVIFDHLHATAFQYTPLGRT--ILGPAQNIKTITK----------EHLQNYIHTHYTAPRMVIAASGAVKH-EE-VVEQ 150 (386)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~--~~g~~~~l~~i~~----------~~l~~~~~~~~~~~~~~l~i~G~~~~-~~-~~~~ 150 (386)
...+.......+|+...+... ++-..+-++.+.. +.+++..+-....+.+.+.++||++. ++ ...+
T Consensus 687 ~~vlss~~~~~lY~~~slk~s~d~L~~Ek~l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~W 766 (1022)
T KOG0961|consen 687 CTVLSSAVASMLYGKNSLKISFDELVLEKLLEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSW 766 (1022)
T ss_pred cEehHHHHHHHHhcccchhhcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCc
Confidence 888888888889976544432 2222222222211 23333333234467888999999851 11 1111
Q ss_pred HHHHhcCCCCCCCccccc--c--c--C-CCCccCC-CceEEecCCCCceEEEEEeccC-CCCCchhhHHHHHHHHcCCCC
Q 016631 151 VKKLFTKLSADPTTASQL--V--A--N-EPAIFTG-SEVRIIDDDIPLAQFAVAFAGA-SWTDPDSIALMVMQAMLGSWN 221 (386)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~--~--~--~-~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~ll~~iL~~~~ 221 (386)
...... ++-..|.... + . . +....++ +...+..+..+.+.+....+.. .|.+++.+...++..+|+.
T Consensus 767 -n~l~~~-~~~~nP~~~f~~tf~~~~~~s~e~gsssk~~~I~~p~sESs~l~~sip~~~~w~dpel~~~~l~~~YL~~-- 842 (1022)
T KOG0961|consen 767 -NWLQAD-PRFGNPGHQFSATFEAGENVSLELGSSSKELLIGVPGSESSFLYQSIPLDANWNDPELIPAMLFGQYLSQ-- 842 (1022)
T ss_pred -hhhhcC-cccCCchhhcccccccCcccceeccCCcceeEecCCCccccceeeecccccccCCcchhHHHHHHHHHHh--
Confidence 001111 1111111100 0 0 0 0111111 2234555666666677776644 6899999999999999985
Q ss_pred CCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHH
Q 016631 222 KNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQ 300 (386)
Q Consensus 222 ~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~ 300 (386)
+.+|+|+.+|..|++|+++.+....++.-.|.|+.+.++..+-+.-+.+.+.+.. .. .+++.+|+.||..
T Consensus 843 --------~eGPfW~~IRG~GLAYGanm~~~~d~~~~~~~iyr~ad~~kaye~~rdiV~~~vs-G~~e~s~~~~egAk~s 913 (1022)
T KOG0961|consen 843 --------CEGPFWRAIRGDGLAYGANMFVKPDRKQITLSIYRCADPAKAYERTRDIVRKIVS-GSGEISKAEFEGAKRS 913 (1022)
T ss_pred --------cccchhhhhcccchhccceeEEeccCCEEEEEeecCCcHHHHHHHHHHHHHHHhc-CceeecHHHhccchHH
Confidence 6899999999999999999988888878888888888875444433333333322 13 8999999999999
Q ss_pred HHHhhHhhccCchH-HHHHHHHHHHhhCCccCH-HHHHHHHhcCCHHHHHHHHHHhhc
Q 016631 301 LKSSLLLHIDGTSP-VAEDIGRQLLTYGRRIPF-AELFARIDSVDASTVKRVANRFIY 356 (386)
Q Consensus 301 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~i~~vt~~dv~~~~~~~l~ 356 (386)
.+............ -+...... ...+.+.+. ..+.+.|.+||.+|+.+..+.|+.
T Consensus 914 ~~~~~~~~Eng~~~~a~~~~~l~-~~~q~~~~fn~~~leri~nvT~~~~~~~~~~y~~ 970 (1022)
T KOG0961|consen 914 TVFEMMKRENGTVSGAAKISILN-NFRQTPHPFNIDLLERIWNVTSEEMVKIGGPYLA 970 (1022)
T ss_pred HHHHHHHHhccceechHHHHHHH-HHHhcCCcccHHHHHHHHHhhHHHHHHhccccee
Confidence 98888876543322 22222222 223444454 689999999999999999887754
No 22
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=98.57 E-value=4.2e-06 Score=80.77 Aligned_cols=174 Identities=13% Similarity=0.072 Sum_probs=118.7
Q ss_pred EecCCCCceEEEEEeccCCCCCc--hhhHHHHHHHHcCCCCCCCCCCCCccc-HHHHHhccccceeeeeecccccCCcce
Q 016631 183 IIDDDIPLAQFAVAFAGASWTDP--DSIALMVMQAMLGSWNKNSVGGKHMGS-ELAQRVGINEIAESMMAFNTNYKDTGL 259 (386)
Q Consensus 183 ~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~ll~~iL~~~~~~~~~~~~~~s-~L~~~lre~gl~y~~~~~~~~~~~~~~ 259 (386)
+..++.+.+.+.+.++.....++ .....+++.+++-. |.++.... .+.+.+...|..++++.. ...
T Consensus 14 v~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFk-----GT~~~~~~~~i~~~le~lGG~lNA~Ts------~d~ 82 (696)
T TIGR02110 14 YHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFL-----GGERFQGDDRLMPWVQRQGGQVNATTL------ERT 82 (696)
T ss_pred EECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhc-----CCCCCCcHHHHHHHHHHhCCeEEEEEc------CCe
Confidence 44556677888888887665443 23455778777753 44433222 466666666766544333 233
Q ss_pred eEEEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCH--HHHHH
Q 016631 260 FGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPF--AELFA 337 (386)
Q Consensus 260 ~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 337 (386)
..+++.+.+++.++++..+.+.+.+- -|+++++++.|...+.++....+++...+.......++.+.+... --..+
T Consensus 83 T~y~~~v~~~~l~~aL~lLaD~l~~P--~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~e 160 (696)
T TIGR02110 83 TAFFFELPAAALAAGLARLCDMLARP--LLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRD 160 (696)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 44456677788888887766655422 799999999999999999988888888777766655544444331 12244
Q ss_pred HHhc---CCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 338 RIDS---VDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 338 ~i~~---vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
.|.+ +|.+|++++.++++.+++++++|+|+.+
T Consensus 161 sL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs 195 (696)
T TIGR02110 161 SLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQS 195 (696)
T ss_pred HHhCcccchHHHHHHHHHHhcchhcEEEEEEeCCC
Confidence 4554 4599999999999999999999999865
No 23
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=98.48 E-value=5.3e-06 Score=77.39 Aligned_cols=184 Identities=13% Similarity=0.058 Sum_probs=128.2
Q ss_pred CCceEEEEEeccCCCC--CchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEEEee
Q 016631 188 IPLAQFAVAFAGASWT--DPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAV 265 (386)
Q Consensus 188 ~~~~~v~~~~~~~~~~--~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~~ 265 (386)
.+...+.+.+...... .......+++.+++-. |..+...+-+.+.+-..|.... ++.. .+...+. +.
T Consensus 36 ~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fk-----gt~~~~~~~i~~~~~~~G~~~n--a~ts--~d~t~y~--~~ 104 (438)
T COG0612 36 APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFK-----GTTGLPSAELAEAFEKLGGQLN--AFTS--FDYTVYY--LS 104 (438)
T ss_pred CCEEEEEEEEeecccCCCCCcccHHHHHHHHHcc-----CCCCCChHHHHHHHHHhcCeee--cccc--chhhhhh--hh
Confidence 5666777777743322 2234456777777753 2222222246666666665533 3221 1222333 22
Q ss_pred eCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCH--HHHHHHHhcCC
Q 016631 266 AKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPF--AELFARIDSVD 343 (386)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~vt 343 (386)
+.+++.+++++.+.+.+..- -|++++|++.|..++..+....++|...+...+...+..+.+... --..+.|.++|
T Consensus 105 ~l~~~~~~~l~llad~l~~p--~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e~I~~it 182 (438)
T COG0612 105 VLPDNLDKALDLLADILLNP--TFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEESIEAIT 182 (438)
T ss_pred hchhhhHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCHHHHHhCC
Confidence 56788899998888877643 699999999999999999999999999988887776665555443 34589999999
Q ss_pred HHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhhhhc
Q 016631 344 ASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWN 384 (386)
Q Consensus 344 ~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~~~~ 384 (386)
.+|+.++.+++..|++++++|+|+.+.-.....+++....|
T Consensus 183 ~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~ 223 (438)
T COG0612 183 REDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDL 223 (438)
T ss_pred HHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccC
Confidence 99999999999999999999999876544556666666544
No 24
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=97.42 E-value=0.0078 Score=46.92 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=92.6
Q ss_pred EEecCCCCceEEEEEeccCCCCCc--hhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcce
Q 016631 182 RIIDDDIPLAQFAVAFAGASWTDP--DSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGL 259 (386)
Q Consensus 182 ~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~ 259 (386)
....++.+.+.+.+.+......++ ......++.+++.. |..+.....+.+.+...|..+.+... ...
T Consensus 4 ~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~-----gs~~~~~~~l~~~l~~~G~~~~~~t~------~d~ 72 (149)
T PF00675_consen 4 LVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFR-----GSKKYSSDELQEELESLGASFNASTS------RDS 72 (149)
T ss_dssp EEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTS-----BBSSSBHHHHHHHHHHTTCEEEEEEE------SSE
T ss_pred EEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhccc-----ccchhhhhhhHHHhhhhccccceEec------ccc
Confidence 345557788899999987664443 23566788887764 22222223466666666776654433 345
Q ss_pred eEEEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCcc
Q 016631 260 FGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRI 330 (386)
Q Consensus 260 ~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (386)
..+++.+.++++..+++.+.+.+..- .+++++|++.|..+...+....+++...+...+....+.+.+.
T Consensus 73 t~~~~~~~~~~~~~~l~~l~~~~~~P--~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~ 141 (149)
T PF00675_consen 73 TSYSASVLSEDLEKALELLADMLFNP--SFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPY 141 (149)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHSB--GGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGG
T ss_pred eEEEEEEecccchhHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCC
Confidence 55667777788888888887776532 7999999999999999999988888777777766666555543
No 25
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=97.16 E-value=0.0056 Score=52.22 Aligned_cols=63 Identities=25% Similarity=0.370 Sum_probs=49.2
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeecc-----------eEEEEEEEeccccHHHHHHHHHHhhcCCCCChH
Q 016631 2 IFKGTEKRTARDLEEEIENMGGHLNAYTSR-----------EQTTYYAKVLDKDVNNALDILADILQNSTFDQA 64 (386)
Q Consensus 2 ~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~-----------~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 64 (386)
.-.||+++++.++...+..+-|.+++++.. ..+.++++++.++++.+++++.+++.++.|++.
T Consensus 119 ~~lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~ 192 (248)
T PF08367_consen 119 GELGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDK 192 (248)
T ss_dssp CCS-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-H
T ss_pred HhCCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcH
Confidence 346999999999999999885555555422 467889999999999999999999999999974
No 26
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.075 Score=46.91 Aligned_cols=174 Identities=12% Similarity=0.052 Sum_probs=112.9
Q ss_pred EecCCCCceEEEEEeccCCC--CCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCccee
Q 016631 183 IIDDDIPLAQFAVAFAGASW--TDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLF 260 (386)
Q Consensus 183 ~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~ 260 (386)
....+...+.|.+.+..... +.++....+.+.++.- .|.+.....-|-.++..-|. ..+.+...-.-
T Consensus 47 TE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaF-----KGT~~Rs~~alElEieniGa------hLNAytSReqT 115 (467)
T KOG0960|consen 47 TEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAF-----KGTKNRSQAALELEIENIGA------HLNAYTSREQT 115 (467)
T ss_pred eccCCCcceEEEEEeccCccccccccccHHHHHHHHHh-----cCCCcchhHHHHHHHHHHHH------Hhcccccccce
Confidence 33345667788887776543 3455666677777432 23332222222222211232 22222222333
Q ss_pred EEEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCH--HHHHHH
Q 016631 261 GVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPF--AELFAR 338 (386)
Q Consensus 261 ~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 338 (386)
..|+.+-++++++++..+.+.+..- .+.+.+|++-+...+.+.....++.....-.+.....+.|.|... ..-.+.
T Consensus 116 ~yyakal~~dv~kavdiLaDIlqns--~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~en 193 (467)
T KOG0960|consen 116 VYYAKALSKDVPKAVDILADILQNS--KLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPSEN 193 (467)
T ss_pred eeehhhccccchHHHHHHHHHHHhC--ccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChhhh
Confidence 4467777888999998877755432 799999999999998888876666555555555555556777654 456799
Q ss_pred HhcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 339 IDSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 339 i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
|++|+.+|+..+++.++.+.+++++..|..+
T Consensus 194 I~si~r~DL~~yi~thY~~~RmVlaaaGgV~ 224 (467)
T KOG0960|consen 194 IKSISRADLKDYINTHYKASRMVLAAAGGVK 224 (467)
T ss_pred hhhhhHHHHHHHHHhcccCccEEEEecCCcC
Confidence 9999999999999999999999999998543
No 27
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.016 Score=50.95 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=92.3
Q ss_pred cCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCC--CCChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcC
Q 016631 21 MGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNS--TFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQ 98 (386)
Q Consensus 21 ~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 98 (386)
.-+.-+.+.+.--++++++++++.+.++++++..-+.+. ..++++++|.|..+.+.+-+...+-.-.+.|.-++.+-.
T Consensus 324 ctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~ 403 (472)
T KOG2067|consen 324 CTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTT 403 (472)
T ss_pred hhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhc
Confidence 345567777888899999999999999999998877553 388999999999999999987777666777777877754
Q ss_pred CCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCC
Q 016631 99 YTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVK 143 (386)
Q Consensus 99 ~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~ 143 (386)
+.. .++---.+.|++++.+|+.++.++.++. +-++.-.||+.
T Consensus 404 g~r--k~p~e~~~~Ie~lt~~DI~rva~kvlt~-~p~va~~Gd~~ 445 (472)
T KOG2067|consen 404 GER--KPPDEFIKKIEQLTPSDISRVASKVLTG-KPSVAAFGDGT 445 (472)
T ss_pred cCc--CCHHHHHHHHHhcCHHHHHHHHHHHhcC-CceeccCCccc
Confidence 321 2222245678899999999999998864 45566667763
No 28
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=91.57 E-value=7.9 Score=34.80 Aligned_cols=178 Identities=11% Similarity=0.041 Sum_probs=103.0
Q ss_pred EecCCCCceEEEEEeccCCCCCchh--hHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccc-cceeeeeecccccCCcce
Q 016631 183 IIDDDIPLAQFAVAFAGASWTDPDS--IALMVMQAMLGSWNKNSVGGKHMGSELAQRVGIN-EIAESMMAFNTNYKDTGL 259 (386)
Q Consensus 183 ~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~-gl~y~~~~~~~~~~~~~~ 259 (386)
....+.+.+.+.+.|.......+.. ..-++++..-+.. --+..=++..|+. .+ ++........-.
T Consensus 36 s~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~--------Tq~~sal~ivr~se~~----GG~Lss~~tRe~ 103 (429)
T KOG2583|consen 36 SREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRD--------TQERSALKIVRESEQL----GGTLSSTATREL 103 (429)
T ss_pred eccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccC--------ccccchhhhhhhhHhh----Cceeeeeeecce
Confidence 4455667889999999776444322 4456666665531 1123334455642 21 111122233456
Q ss_pred eEEEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCHHHHH--H
Q 016631 260 FGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELF--A 337 (386)
Q Consensus 260 ~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 337 (386)
+.+.+.+..++.+-.+..+.+....- .|.+.|++...- ........+.++...+....+..-+.+ .....-+. -
T Consensus 104 ~~~tvt~lrd~~~~~l~~L~~V~~~p--aFkPwEl~D~~~-~ti~~~l~~~t~~~~a~e~lH~aAfRn-gLgnslY~p~~ 179 (429)
T KOG2583|consen 104 IGLTVTFLRDDLEYYLSLLGDVLDAP--AFKPWELEDVVL-ATIDADLAYQTPYTIAIEQLHAAAFRN-GLGNSLYSPGY 179 (429)
T ss_pred EEEEEEEecccHHHHHHHHHHhhccc--CcCchhhhhhhh-hhhHHHhhhcChHHHHHHHHHHHHHhc-ccCCcccCCcc
Confidence 77777777777766666655554321 788888888774 222333344666666554444332222 22222232 3
Q ss_pred HHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHH
Q 016631 338 RIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFR 378 (386)
Q Consensus 338 ~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~ 378 (386)
++.+++.+|+..|+++.|...+.+++-+|+.. +++..+.
T Consensus 180 ~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~--~~L~~~~ 218 (429)
T KOG2583|consen 180 QVGSVSSSELKDFAAKHFVKGNAVLVGVNVDH--DDLKQFA 218 (429)
T ss_pred cccCccHHHHHHHHHHHhhccceEEEecCCCh--HHHHHHH
Confidence 69999999999999999999988888777633 3444443
No 29
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=90.23 E-value=5.4 Score=34.03 Aligned_cols=116 Identities=15% Similarity=0.127 Sum_probs=71.4
Q ss_pred cCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc--ccceeeeeeccc---ccCCcce
Q 016631 185 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI--NEIAESMMAFNT---NYKDTGL 259 (386)
Q Consensus 185 ~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre--~gl~y~~~~~~~---~~~~~~~ 259 (386)
.+....+++.+.|+.+..+..+...+.++..+|+. .|.+.....-|-..+.. .|+..++.+... .......
T Consensus 86 ~~TnGI~Y~~l~fdl~~l~~e~l~yl~Ll~~ll~~----lgT~~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~~~~ 161 (248)
T PF08367_consen 86 QPTNGIVYVRLYFDLSDLPEEDLPYLPLLTDLLGE----LGTKNYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKYRPY 161 (248)
T ss_dssp ---TTEEEEEEEEE-TTS-CCCHCCHHHHHHHCCC----S-BSSS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCCEEE
T ss_pred cCCCCeEEEEEEecCCCCCHHHHHhHHHHHHHHHh----CCCCCCCHHHHHHHHHHhCCCeEEEeeeccCCCCccceeEE
Confidence 33456689999999888888888889999999986 35555444445555543 255555544332 2344467
Q ss_pred eEEEeeeCcccHHHHHHHHHHHHHHhhcCCCHHH-HHHHHHHHHHhhH
Q 016631 260 FGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEAD-VTRARNQLKSSLL 306 (386)
Q Consensus 260 ~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~e-l~~~k~~~~~~~~ 306 (386)
|.+.+.+-.++++++++.+.+.+.+. .|++.+ +.....+....+.
T Consensus 162 l~is~k~L~~~~~~~~~ll~eil~~~--~f~d~~rl~~ll~~~~s~~~ 207 (248)
T PF08367_consen 162 LVISAKCLDEKLDEAFELLSEILTET--DFDDKERLKELLKELKSDME 207 (248)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHCB---TT-HHHHHHHHHHHHHHHH
T ss_pred EEEEEEeHhhhHHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHHHHH
Confidence 77888888899999999998888653 677653 3333334443333
No 30
>PHA03081 putative metalloprotease; Provisional
Probab=73.44 E-value=69 Score=29.96 Aligned_cols=130 Identities=15% Similarity=0.200 Sum_probs=75.0
Q ss_pred eeeeecceEEEEEEEecccc-HHHHHHHHHHhhcCCC-----CChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcC
Q 016631 25 LNAYTSREQTTYYAKVLDKD-VNNALDILADILQNST-----FDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQ 98 (386)
Q Consensus 25 ~~~~t~~~~~~~~~~~~~~~-l~~~l~~l~~~~~~~~-----~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 98 (386)
-||+|.+.+..|-+.+.... ..+++.-+.+++.+.. |+...++...+.+-+|+- ..+-.....+.+.- +.+
T Consensus 57 anast~r~ymsfwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~ik~~ikELENEYY--FRnEvfHCmDvLTf-L~g 133 (595)
T PHA03081 57 ANASTARSYMSFWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSKIRNHIKELENEYY--FRNEVFHCMDVLTF-LGG 133 (595)
T ss_pred ccchhhhhhHhHhhHhhcCCchHHHHHHHHHHhccCCccccccchhhHHHHHHHHhhhhh--hhhhhHHHHHHHHH-hcC
Confidence 58899999998887766543 4677888888887665 444444433333333332 22334455555533 334
Q ss_pred CCCCCCCCCCCchhhcccCHHHHHHHHHh---hCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCCCCc
Q 016631 99 YTPLGRTILGPAQNIKTITKEHLQNYIHT---HYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTT 164 (386)
Q Consensus 99 ~~~~~~~~~g~~~~l~~i~~~~l~~~~~~---~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~ 164 (386)
+.-|. .|..+.++++ +++++.... .....|++++|- .++ +.+..++.+.||.+|+.+..
T Consensus 134 GDLYN---GGRi~ML~~l--~~i~~~L~~RM~~I~GpniVIFVk-~ln-~~~l~lL~~TFGtLP~~P~~ 195 (595)
T PHA03081 134 GDLYN---GGRIDMLDNL--NDVRDMLSNRMHRISGPNIVIFVK-ELN-PNTLSLLNNTFGTLPSCPET 195 (595)
T ss_pred CcccC---CchHHHHhhh--HHHHHHHHHHHHhhcCCcEEEEEe-ccC-HHHHHHHHHhcCCCCCCccc
Confidence 44443 3444444443 233333222 223456766664 476 55678999999999987644
No 31
>PF09186 DUF1949: Domain of unknown function (DUF1949); InterPro: IPR015269 Members of this entry are a set of functionally uncharacterised hypothetical bacterial proteins. They adopt a ferredoxin-like fold, with a beta-alpha-beta-beta-alpha-beta arrangement []. This entry contains the protein Impact, which is a translational regulator that ensures constant high levels of translation under amino acid starvation. It acts by interacting with Gcn1/Gcn1L1, thereby preventing activation of Gcn2 protein kinases (EIF2AK1 to 4) and subsequent down-regulation of protein synthesis. It is evolutionary conserved from eukaryotes to archaea []. ; PDB: 2CVE_A 1VI7_A.
Probab=72.58 E-value=19 Score=22.01 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=40.3
Q ss_pred CC-hHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhc
Q 016631 9 RT-ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQ 57 (386)
Q Consensus 9 ~~-~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 57 (386)
|+ ...+..+|..+++.+.-....+.+.+.+..+.+..+.+.+.|.++..
T Consensus 5 Y~~~~~v~~~l~~~~~~i~~~~y~~~V~~~v~v~~~~~~~f~~~l~~~t~ 54 (56)
T PF09186_consen 5 YSQYGKVERLLEQNGIEIVDEDYTDDVTLTVAVPEEEVEEFKAQLTDLTS 54 (56)
T ss_dssp CCCHHHHHHHHHHTTTEEEEEEECTTEEEEEEEECCCHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHCCCEEEcceecceEEEEEEECHHHHHHHHHHHHHHcC
Confidence 44 45688899999999866666667999999999999999999988653
No 32
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=62.54 E-value=36 Score=22.50 Aligned_cols=52 Identities=13% Similarity=0.090 Sum_probs=41.7
Q ss_pred cCCCCChHHHHHHHHhcCCe-eeeeecceEEEEEEEeccccHHHHHHHHHHhhc
Q 016631 5 GTEKRTARDLEEEIENMGGH-LNAYTSREQTTYYAKVLDKDVNNALDILADILQ 57 (386)
Q Consensus 5 Gt~~~~~~~l~~~l~~~g~~-~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 57 (386)
|..+|+ .++.+.|..++++ ++-.++.+.+++++.+..+.++.++..|...+-
T Consensus 13 G~~g~d-~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p 65 (71)
T cd04910 13 GEVGYD-LEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFP 65 (71)
T ss_pred CChhHH-HHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCc
Confidence 444455 3788899999887 467888899999999999999988888877663
No 33
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=60.11 E-value=1.5e+02 Score=27.81 Aligned_cols=130 Identities=16% Similarity=0.212 Sum_probs=73.2
Q ss_pred eeeeecceEEEEEEEecccc-HHHHHHHHHHhhcCC-----CCChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcC
Q 016631 25 LNAYTSREQTTYYAKVLDKD-VNNALDILADILQNS-----TFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQ 98 (386)
Q Consensus 25 ~~~~t~~~~~~~~~~~~~~~-l~~~l~~l~~~~~~~-----~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 98 (386)
-||+|++.+..|=+.+.... ..+++.-+.+++..- .|+...++...+.+-+|+-- .+-.....+.+.-+ .+
T Consensus 57 ANASTaRsYMSFWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEYYF--RnEvfHCmDvLtfL-~g 133 (590)
T PF03410_consen 57 ANASTARSYMSFWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEYYF--RNEVFHCMDVLTFL-GG 133 (590)
T ss_pred cccchhhhhhhhhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhhhh--hhhHHHHHHHHHHh-cC
Confidence 58999999999988777644 455566666665442 25555555444444443322 23344555555333 34
Q ss_pred CCCCCCCCCCCchhhcccCHHHHHHHHHh---hCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCCCCc
Q 016631 99 YTPLGRTILGPAQNIKTITKEHLQNYIHT---HYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTT 164 (386)
Q Consensus 99 ~~~~~~~~~g~~~~l~~i~~~~l~~~~~~---~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~ 164 (386)
+.-|. .|..+.+.+++ ++.+.... .....|++++|-- ++ +.+..++++.||.+|+.+..
T Consensus 134 GDLYN---GGRi~ML~~l~--~i~~mL~~RM~~I~GpniVIFVk~-l~-~~~l~lL~~TFGtLP~cP~~ 195 (590)
T PF03410_consen 134 GDLYN---GGRIDMLNNLN--DIRNMLSNRMHRIIGPNIVIFVKE-LN-PNILSLLSNTFGTLPSCPLT 195 (590)
T ss_pred CcccC---CchHHHHhhhH--HHHHHHHHHHHhhcCCcEEEEEec-cC-HHHHHHHHHhcCCCCCCccc
Confidence 44443 23444444432 22222111 2234567766644 76 55678999999999987654
No 34
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=58.96 E-value=20 Score=28.21 Aligned_cols=42 Identities=10% Similarity=0.239 Sum_probs=29.0
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhhcCC---CCChHHHHHHHHHH
Q 016631 32 EQTTYYAKVLDKDVNNALDILADILQNS---TFDQARITRERDVI 73 (386)
Q Consensus 32 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~---~~~~~~~~~~k~~~ 73 (386)
..+.+.+++.+++++.+++.+.+.+... .+++++|++.|+.+
T Consensus 140 ~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 140 GLFSISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred eEEEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 4566777777778777777666666442 49999999988753
No 35
>PF12122 DUF3582: Protein of unknown function (DUF3582); InterPro: IPR022732 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the N-terminal domain of membrane-bound serine endopeptidases belonging to MEROPS peptidase family S54 (rhomboid-1, clan ST). This domain contains a conserved ASW sequence motif and a single completely conserved residue F that may be functionally important. The tertiary structure of the GlpG protein from Escherichia coli has been determined []. The GlpG protein has six transmembrane domains (other members of the family are predicted to have seven), with the N- and C-terminal ends anchored in the cytoplasm. One transmembrane domain is shorter than the rest, creating an internal, aqueous cavity just below the membrane surface and it is here were proteolysis occurs. There is also a membrane-embedded loop between the first and second transmembrane domains which is postulated to act as a gate controlling substrate access to the active site. No other family of serine peptidases is known to have active site residues within transmembrane domains (although transmembrane active sites are known for aspartic peptidase and metallopeptidases), and the GlpG protein has the type structure for clan ST.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....
Probab=56.84 E-value=47 Score=23.76 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=34.7
Q ss_pred hHHHHHHHHhcCCeeeeeecceE-EEEEEEeccccHHHHHHHHHHhhcCCC
Q 016631 11 ARDLEEEIENMGGHLNAYTSREQ-TTYYAKVLDKDVNNALDILADILQNST 60 (386)
Q Consensus 11 ~~~l~~~l~~~g~~~~~~t~~~~-~~~~~~~~~~~l~~~l~~l~~~~~~~~ 60 (386)
+..|.++|...|+.+........ ..+-+. ..++++.+-..+...+.+|.
T Consensus 13 AqaF~DYl~sqgI~~~i~~~~~~~~~lwl~-de~~~~~a~~el~~Fl~nP~ 62 (101)
T PF12122_consen 13 AQAFIDYLASQGIELQIEPEGQGQFALWLH-DEEHLEQAEQELEEFLQNPN 62 (101)
T ss_dssp HHHHHHHHHHTT--EEEE-SSSE--EEEES--GGGHHHHHHHHHHHHHS-S
T ss_pred HHHHHHHHHHCCCeEEEEECCCCceEEEEe-CHHHHHHHHHHHHHHHHCCC
Confidence 56799999999999888865544 455444 66789999999999999995
No 36
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=56.31 E-value=45 Score=24.91 Aligned_cols=65 Identities=9% Similarity=-0.017 Sum_probs=41.8
Q ss_pred ccHHHHHhccccceeeeeecccccCCcceeEEEe---eeCcccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHH
Q 016631 231 GSELAQRVGINEIAESMMAFNTNYKDTGLFGVYA---VAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLK 302 (386)
Q Consensus 231 ~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~ 302 (386)
.++-|+.|.+.|+.|.. ++.|.|.--- ..++.....+.+.+...+..++. |++.+++-.......
T Consensus 52 v~raY~eLE~eG~i~t~-------rg~G~fV~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~G~s~eei~~~~~~~~ 120 (125)
T COG1725 52 VQRAYQELEREGIVETK-------RGKGTFVTEDAKEILDQLKRELAEEELEEFIEEAKALGLSLEEILELLKEIY 120 (125)
T ss_pred HHHHHHHHHHCCCEEEe-------cCeeEEEcCCchhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 36778888888988875 3344433100 11224555666777778888888 999998877665544
No 37
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=49.47 E-value=19 Score=28.62 Aligned_cols=45 Identities=24% Similarity=0.372 Sum_probs=34.4
Q ss_pred CchhhcccCHHHHHHHHHhhC-CCCCeEEEEeCCCCHHHHHHHHHH
Q 016631 109 PAQNIKTITKEHLQNYIHTHY-TAPRMVIAASGAVKHEEVVEQVKK 153 (386)
Q Consensus 109 ~~~~l~~i~~~~l~~~~~~~~-~~~~~~l~i~G~~~~~~~~~~~~~ 153 (386)
+.=.+++.+++++++..+..- .+.++.+.++|.++++.+.++.+.
T Consensus 102 d~I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 102 DIIMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp SEEEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred CEEEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 334677889999999998542 355699999999999999888653
No 38
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=48.60 E-value=66 Score=20.17 Aligned_cols=46 Identities=11% Similarity=0.141 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCCeeeeee-cceEEEEEEEeccccHHHHHHHHHHhhc
Q 016631 12 RDLEEEIENMGGHLNAYT-SREQTTYYAKVLDKDVNNALDILADILQ 57 (386)
Q Consensus 12 ~~l~~~l~~~g~~~~~~t-~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 57 (386)
..+.+.|...|+.+..-. +.....+++..+.++.+.++..|++.+.
T Consensus 19 ~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 19 ATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 467788888898875443 2244888888888899999999988764
No 39
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=45.53 E-value=1e+02 Score=21.74 Aligned_cols=49 Identities=22% Similarity=0.135 Sum_probs=30.3
Q ss_pred hhccCchHHHHHHHHHHHhhCCccCH-HHHHHHHhcCCHHHHHHHHHHhh
Q 016631 307 LHIDGTSPVAEDIGRQLLTYGRRIPF-AELFARIDSVDASTVKRVANRFI 355 (386)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vt~~dv~~~~~~~l 355 (386)
.--+...+.++.+.-.+..+|.+++. +++....+.|+.+.+..+....|
T Consensus 25 NFnEDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF 74 (107)
T PF11517_consen 25 NFNEDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAF 74 (107)
T ss_dssp T--SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred CccccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 33456777777777665555666664 67888889999998877666544
No 40
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=44.56 E-value=50 Score=28.71 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=30.9
Q ss_pred hcccCHHHHHHHHHhhCC---CCCeEEEEeCCCCHHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYT---APRMVIAASGAVKHEEVVEQVKK 153 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~---~~~~~l~i~G~~~~~~~~~~~~~ 153 (386)
+++++++++++.....-. +.++.+.++|+++++.+.++.+.
T Consensus 208 LDn~~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~t 251 (278)
T PRK08385 208 LDNMTPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKL 251 (278)
T ss_pred ECCCCHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHc
Confidence 567788888888775421 35788999999999988877653
No 41
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=44.09 E-value=57 Score=28.16 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=24.1
Q ss_pred hcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQV 151 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~ 151 (386)
+++++++++++..+..-.+.++.+=++|+++++.+....
T Consensus 214 LDNm~~e~~~~av~~l~~~~~~~lEaSGgIt~~ni~~yA 252 (280)
T COG0157 214 LDNMSPEELKEAVKLLGLAGRALLEASGGITLENIREYA 252 (280)
T ss_pred ecCCCHHHHHHHHHHhccCCceEEEEeCCCCHHHHHHHh
Confidence 455666666666666544556666666666666665554
No 42
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=42.60 E-value=55 Score=28.67 Aligned_cols=38 Identities=21% Similarity=0.360 Sum_probs=30.1
Q ss_pred hcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
+++.+.+++++..+.. +.++.+-++|+++++.+.++.+
T Consensus 234 LDn~s~e~~~~av~~~--~~~~~ieaSGGI~~~ni~~yA~ 271 (296)
T PRK09016 234 LDNFTTEQMREAVKRT--NGRALLEVSGNVTLETLREFAE 271 (296)
T ss_pred eCCCChHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHh
Confidence 5677888999888843 4588899999999888877754
No 43
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.45 E-value=68 Score=28.10 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=27.6
Q ss_pred hcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
+++.+++++++..... +.++.+-++|+++++.+.++.+
T Consensus 231 LDnmspe~l~~av~~~--~~~~~lEaSGGIt~~ni~~yA~ 268 (294)
T PRK06978 231 LDNFTLDMMREAVRVT--AGRAVLEVSGGVNFDTVRAFAE 268 (294)
T ss_pred ECCCCHHHHHHHHHhh--cCCeEEEEECCCCHHHHHHHHh
Confidence 4667888888877643 4577788888888888777654
No 44
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.96 E-value=63 Score=28.25 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=28.2
Q ss_pred hcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKK 153 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~ 153 (386)
+++++++++++..... +.++.+-++|+++++.+.+....
T Consensus 223 LDnmspe~l~~av~~~--~~~~~leaSGGI~~~ni~~yA~t 261 (290)
T PRK06559 223 LDNMSLEQIEQAITLI--AGRSRIECSGNIDMTTISRFRGL 261 (290)
T ss_pred ECCCCHHHHHHHHHHh--cCceEEEEECCCCHHHHHHHHhc
Confidence 5677888888887632 45777888888888887776543
No 45
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=39.37 E-value=62 Score=17.22 Aligned_cols=28 Identities=11% Similarity=0.359 Sum_probs=23.3
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 016631 47 NALDILADILQNSTFDQARITRERDVIL 74 (386)
Q Consensus 47 ~~l~~l~~~~~~~~~~~~~~~~~k~~~~ 74 (386)
.-+..|.+...+-.+++++|++.|..++
T Consensus 3 ~~L~~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 3 DRLEKLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 4577788888888999999999888764
No 46
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.60 E-value=99 Score=19.32 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=34.8
Q ss_pred HHHHHHHHhcCCeeeeeec-ceEEEEEEEeccccHHHHHHHHHHhhcC
Q 016631 12 RDLEEEIENMGGHLNAYTS-REQTTYYAKVLDKDVNNALDILADILQN 58 (386)
Q Consensus 12 ~~l~~~l~~~g~~~~~~t~-~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 58 (386)
..+...|...|+.+..-.. .....+++..+.++.+.++..|++.+.+
T Consensus 19 ~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 19 ARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred HHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 4577778888888754432 2447788888889999999999887753
No 47
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=38.08 E-value=1.1e+02 Score=19.60 Aligned_cols=40 Identities=13% Similarity=0.238 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHH
Q 016631 13 DLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILAD 54 (386)
Q Consensus 13 ~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~ 54 (386)
.+..-|...|+++-.-. .+...++-.+.++++.+++.|++
T Consensus 26 ~i~~~La~~~I~i~~is--S~~~~~ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 26 KIFSALAEAGINIFMIS--SEISISILVKEEDLEKAVEALHE 65 (65)
T ss_dssp HHHHHHHHTTS-ECEEE--ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEE--EeeeEEEEEeHHHHHHHHHHhcC
Confidence 46677888899876665 44455555678899999998874
No 48
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=36.45 E-value=77 Score=27.58 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=29.0
Q ss_pred hcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
+++++++++++..... +.+..+-++|+++++.+.+...
T Consensus 219 LDn~s~e~l~~av~~~--~~~~~leaSGgI~~~ni~~yA~ 256 (281)
T PRK06543 219 LDNFSLDDLREGVELV--DGRAIVEASGNVNLNTVGAIAS 256 (281)
T ss_pred ECCCCHHHHHHHHHHh--CCCeEEEEECCCCHHHHHHHHh
Confidence 5777888888888743 4566888888888888877754
No 49
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.11 E-value=1e+02 Score=18.87 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhh
Q 016631 12 RDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADIL 56 (386)
Q Consensus 12 ~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~ 56 (386)
.++.+.|...|+.+...... ...+++..+.++.+.+...|++.+
T Consensus 18 ~~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~~~~~~~~~l~~~l 61 (63)
T cd04923 18 AKMFKALAEAGINIEMISTS-EIKISCLVDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHCCCCEEEEEcc-CCeEEEEEeHHHHHHHHHHHHHHh
Confidence 46888888999887666543 466778888888898898888776
No 50
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.68 E-value=1.1e+02 Score=19.13 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=34.5
Q ss_pred hHHHHHHHHhcCCeeeeee-cceEEEEEEEeccccHHHHHHHHHHhhc
Q 016631 11 ARDLEEEIENMGGHLNAYT-SREQTTYYAKVLDKDVNNALDILADILQ 57 (386)
Q Consensus 11 ~~~l~~~l~~~g~~~~~~t-~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 57 (386)
..++.+.|...|+.+..-. +.....+++..+.++.+.+++.|++.+.
T Consensus 18 ~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~~~~a~~~lh~~~~ 65 (66)
T cd04919 18 AGRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIHTNLL 65 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHh
Confidence 3467888888898874332 2244778888888889999999988764
No 51
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=35.62 E-value=1.1e+02 Score=18.82 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=34.7
Q ss_pred hHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhh
Q 016631 11 ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADIL 56 (386)
Q Consensus 11 ~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~ 56 (386)
..++...|...|+.+...+.. ...+++..+.++.+.+...|+..+
T Consensus 17 ~~~i~~~L~~~~i~v~~i~~s-~~~is~~v~~~d~~~~~~~l~~~~ 61 (63)
T cd04936 17 AAKMFEALAEAGINIEMISTS-EIKISCLIDEDDAEKAVRALHEAF 61 (63)
T ss_pred HHHHHHHHHHCCCcEEEEEcc-CceEEEEEeHHHHHHHHHHHHHHh
Confidence 346888889999887766543 477778888888888888888766
No 52
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=35.31 E-value=99 Score=27.09 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=30.3
Q ss_pred hcccCHHHHHHHHHhhC-CCCCeEEEEeCCCCHHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHY-TAPRMVIAASGAVKHEEVVEQVKK 153 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~-~~~~~~l~i~G~~~~~~~~~~~~~ 153 (386)
+++++++++++.....- ...++.+-++|+++++.+.++.+.
T Consensus 225 LDnm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~yA~t 266 (289)
T PRK07896 225 LDNFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAYAET 266 (289)
T ss_pred eCCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHhc
Confidence 56778888888886421 245788888999998888777653
No 53
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.43 E-value=1.2e+02 Score=18.94 Aligned_cols=45 Identities=11% Similarity=0.047 Sum_probs=33.9
Q ss_pred HHHHHHHHhcCCeeeeeec-ceEEEEEEEeccccHHHHHHHHHHhh
Q 016631 12 RDLEEEIENMGGHLNAYTS-REQTTYYAKVLDKDVNNALDILADIL 56 (386)
Q Consensus 12 ~~l~~~l~~~g~~~~~~t~-~~~~~~~~~~~~~~l~~~l~~l~~~~ 56 (386)
.++.+.|...|+.+..-.. .....+++..+.++.+.+++.|++.+
T Consensus 19 ~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~Lh~~~ 64 (66)
T cd04924 19 GRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHDEF 64 (66)
T ss_pred HHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHh
Confidence 4577888888888754432 23477888888899999999998876
No 54
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=32.39 E-value=1.7e+02 Score=20.21 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=42.4
Q ss_pred cHHHHHHHHHHHHHH-hhc-----CCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCC-ccCHHHHHHHHhcC
Q 016631 270 CLDDLAYAIMYETTK-LAY-----RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGR-RIPFAELFARIDSV 342 (386)
Q Consensus 270 ~~~~~~~~~~~~i~~-l~~-----~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~v 342 (386)
.+++++..+...+.. ... .++.+||..........+.....++ ..+..++...-..++ ..+++++...+..+
T Consensus 3 ~le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~-~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 3 ETERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDP-GVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCH-HHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 355667777777766 322 3889999888877766665433333 334444443222222 24567777777665
Q ss_pred CH
Q 016631 343 DA 344 (386)
Q Consensus 343 t~ 344 (386)
+.
T Consensus 82 ~~ 83 (89)
T cd05023 82 AV 83 (89)
T ss_pred HH
Confidence 43
No 55
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.51 E-value=1e+02 Score=26.88 Aligned_cols=38 Identities=21% Similarity=0.301 Sum_probs=25.4
Q ss_pred hcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
+++.+++++++..... +.+..+-++|+++++.+.++.+
T Consensus 220 LDn~s~e~l~~av~~~--~~~~~leaSGGI~~~ni~~yA~ 257 (281)
T PRK06106 220 LDNMTPDTLREAVAIV--AGRAITEASGRITPETAPAIAA 257 (281)
T ss_pred eCCCCHHHHHHHHHHh--CCCceEEEECCCCHHHHHHHHh
Confidence 4666777777777743 3344577778888777766654
No 56
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=31.25 E-value=1.5e+02 Score=19.09 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCC
Q 016631 12 RDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST 60 (386)
Q Consensus 12 ~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~ 60 (386)
.++...|...|+++..-.-. ...++++.+..+++.+.+++.++=.+|.
T Consensus 17 a~if~~La~~~InvDmI~~~-~~~isFtv~~~d~~~~~~il~~~~~~~~ 64 (67)
T cd04914 17 QRVFKALANAGISVDLINVS-PEEVIFTVDGEVAEKAVDILEKMGLDPS 64 (67)
T ss_pred HHHHHHHHHcCCcEEEEEec-CCCEEEEEchhhHHHHHHHHHHcCCceE
Confidence 45888899999887766322 1157788888888888888777665554
No 57
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=31.23 E-value=1.2e+02 Score=26.37 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=27.3
Q ss_pred hcccCHHHHHHHHHhhC-CCCCeEEEEeCCCCHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHY-TAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~-~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
+++++.+++++..+..- ...++.+-++|.++++.+.++..
T Consensus 214 lDn~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ya~ 254 (277)
T TIGR01334 214 LDKFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADYIE 254 (277)
T ss_pred ECCCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHHHh
Confidence 45667777777777542 23467788888888887766654
No 58
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=30.89 E-value=1.3e+02 Score=18.33 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCCeeeeeec-ceEEEEEEEeccccHHHHHHHHHHhhc
Q 016631 12 RDLEEEIENMGGHLNAYTS-REQTTYYAKVLDKDVNNALDILADILQ 57 (386)
Q Consensus 12 ~~l~~~l~~~g~~~~~~t~-~~~~~~~~~~~~~~l~~~l~~l~~~~~ 57 (386)
..+.+.|...++.+..... .....+++..+.++.+.++..|++.+.
T Consensus 18 ~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~~~~~~~~l~~~~~ 64 (65)
T cd04892 18 ARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALHEEFF 64 (65)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHHHHHHHHHHHHHHh
Confidence 4577888888888765543 234777888888889999998887764
No 59
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=30.62 E-value=82 Score=25.60 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=31.8
Q ss_pred hcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
..=++.+++.++.+. .|.++.++++|.--++++.+.++
T Consensus 130 ~gli~~eevi~~L~~--rp~~~evVlTGR~~p~~Lie~AD 167 (191)
T PRK05986 130 YGYLDVEEVLEALNA--RPGMQHVVITGRGAPRELIEAAD 167 (191)
T ss_pred CCCccHHHHHHHHHc--CCCCCEEEEECCCCCHHHHHhCc
Confidence 345789999999986 79999999999988888877754
No 60
>cd08805 Death_ank1 Death domain of Ankyrin-1. Death Domain (DD) of the human protein ankyrin-1 (ANK-1) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-1, also called ankyrin-R (for restricted), is found in brain, muscle, and erythrocytes and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. It plays a critical nonredundant role in erythroid development and is associated with hereditary spherocytosis (HS), a common disorder of the red cell membrane. The small alternatively-spliced variant, sANK-1, found in striated muscle and concentrated in the sarcoplasmic reticulum (SR) binds obscurin and titin, which facilitates the anchoring of the network SR to the contractile apparatus. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common featur
Probab=30.33 E-value=1.8e+02 Score=19.93 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHh-hCCccCHHHHHHHHhcCCHHHHHH
Q 016631 273 DLAYAIMYETTKLAY--RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLT-YGRRIPFAELFARIDSVDASTVKR 349 (386)
Q Consensus 273 ~~~~~~~~~i~~l~~--~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~vt~~dv~~ 349 (386)
.+.+.+-....++.. ++++.+++..+...-+++ ...+..+...+.. .|.....+.+...+.++...||..
T Consensus 9 ~Ia~~LG~dW~~Lar~L~vs~~dI~~I~~e~p~~l-------~~Q~~~~L~~W~~r~g~~At~~~L~~AL~~i~R~div~ 81 (84)
T cd08805 9 VIREHLGLSWAELARELQFSVEDINRIRVENPNSL-------LEQSTALLNLWVDREGENAKMSPLYPALYSIDRLTIVN 81 (84)
T ss_pred HHHHHhcchHHHHHHHcCCCHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHhcCccchHHHHHHHHHHCChHHHHH
Confidence 344444445555544 999999999886543332 2233333332222 344445678999999999999876
Q ss_pred HH
Q 016631 350 VA 351 (386)
Q Consensus 350 ~~ 351 (386)
..
T Consensus 82 ~~ 83 (84)
T cd08805 82 ML 83 (84)
T ss_pred hh
Confidence 53
No 61
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.14 E-value=2.1e+02 Score=20.31 Aligned_cols=54 Identities=15% Similarity=0.132 Sum_probs=36.1
Q ss_pred ccHHHHHhccccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHH
Q 016631 231 GSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTK 284 (386)
Q Consensus 231 ~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~ 284 (386)
+.+|.+.|+++++...=-+....+-..|--.+.++++.++++++...|.+..+.
T Consensus 13 a~~l~~~L~d~~fraTkLAsTGGFlkaGNTTfliGved~~vd~~~s~Ike~C~~ 66 (109)
T COG3870 13 ANELEDALTDKNFRATKLASTGGFLKAGNTTFLIGVEDDRVDALRSLIKENCKS 66 (109)
T ss_pred HHHHHHHHHhCCceeEEeeccCceeecCCeEEEEecccchhHHHHHHHHHHhhh
Confidence 577888888775544323344444445666677888888898888888776543
No 62
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.56 E-value=1.5e+02 Score=25.79 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=28.2
Q ss_pred hcccCHHHHHHHHHhhCC-CCCeEEEEeCCCCHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYT-APRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~-~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
+++.+++++++..+..-. ..++.+.++|+++++.+.+.++
T Consensus 208 LDn~~~e~l~~~v~~~~~~~~~~~ieAsGgIt~~ni~~ya~ 248 (273)
T PRK05848 208 CDNMSVEEIKEVVAYRNANYPHVLLEASGNITLENINAYAK 248 (273)
T ss_pred ECCCCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHH
Confidence 566788888888774211 2467788888888888877754
No 63
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=27.61 E-value=1.9e+02 Score=21.09 Aligned_cols=54 Identities=11% Similarity=0.122 Sum_probs=34.3
Q ss_pred cHHHHHhccccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHh
Q 016631 232 SELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKL 285 (386)
Q Consensus 232 s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l 285 (386)
..|.+.|.+.|+.-.--+....+-..|--.+-++++.++++++++.+.+....-
T Consensus 14 ~~l~~~L~~~g~~~TkLsstGGFLr~GNtTlliGvede~v~~vl~iIk~~c~~R 67 (109)
T PF06153_consen 14 DDLSDALNENGFRVTKLSSTGGFLREGNTTLLIGVEDEKVDEVLEIIKENCKKR 67 (109)
T ss_dssp HHHHHHHHHTT--EEEEEEEETTTTEEEEEEEEEEEGGGHHHHHHHHHHHH--E
T ss_pred HHHHHHHHHCCceEEEEecccceeccCCEEEEEEecHHHHHHHHHHHHHhhcCc
Confidence 445556666554433223334455567777788999999999999999887653
No 64
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=26.66 E-value=1.7e+02 Score=19.50 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=23.0
Q ss_pred cHHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHhhH
Q 016631 270 CLDDLAYAIMYETTKLAY--RVSEADVTRARNQLKSSLL 306 (386)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~--~~~~~el~~~k~~~~~~~~ 306 (386)
.+.+++..+...+..+.. .+|.+|+..++.-+..--.
T Consensus 3 R~~~i~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~G~ 41 (74)
T PF04444_consen 3 RLKEIMARLVRHLHDFIREVDLTEDEWWAAVDFLNRVGQ 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 345566666666666543 9999999999976654433
No 65
>PHA01346 hypothetical protein
Probab=25.89 E-value=1.4e+02 Score=17.15 Aligned_cols=26 Identities=27% Similarity=0.512 Sum_probs=19.6
Q ss_pred HHhhcCCCCChHHHHHHHHHHHHHHH
Q 016631 53 ADILQNSTFDQARITRERDVILREME 78 (386)
Q Consensus 53 ~~~~~~~~~~~~~~~~~k~~~~~~~~ 78 (386)
...+.+|+|+++.+..+.+.++..+.
T Consensus 24 lsavsdpdfsqekihaeldsllrkls 49 (53)
T PHA01346 24 LSAVSDPDFSQEKIHAELDSLLRKLS 49 (53)
T ss_pred hhhcCCCCccHHHHHHHHHHHHHHHH
Confidence 45678899999888888777766553
No 66
>cd08317 Death_ank Death domain associated with Ankyrins. Death Domain (DD) associated with Ankyrins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. Ankyrins function as adaptor proteins and they interact, through ANK repeats, with structurally diverse membrane proteins, including ion channels/pumps, calcium release channels, and cell adhesion molecules. They play critical roles in the proper expression and membrane localization of these proteins. In mammals, this family includes ankyrin-R for restricted (or ANK1), ankyrin-B for broadly expressed (or ANK2) and ankyrin-G for general or giant (or ANK3). They are expressed in different combinations in many tissues and play non-overlapping functions. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-associati
Probab=25.62 E-value=2.2e+02 Score=19.32 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=45.1
Q ss_pred cHHHHHHHHHHHHHHhhc--CCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHH-hhCCccCHHHHHHHHhcCCHHH
Q 016631 270 CLDDLAYAIMYETTKLAY--RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDAST 346 (386)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~--~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~vt~~d 346 (386)
....+.+.+-....++.. |+++.+++..+...-. +....+..+...+. ..|.......+.+.+..+...|
T Consensus 6 ~l~~ia~~lG~dW~~LAr~Lg~~~~dI~~i~~~~~~-------~~~eq~~~mL~~W~~r~g~~at~~~L~~AL~~i~r~D 78 (84)
T cd08317 6 RLADISNLLGSDWPQLARELGVSETDIDLIKAENPN-------SLAQQAQAMLKLWLEREGKKATGNSLEKALKKIGRDD 78 (84)
T ss_pred hHHHHHHHHhhHHHHHHHHcCCCHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHcChHH
Confidence 344555555566666654 9999999987753222 12222333332222 2455456788999999999999
Q ss_pred HHHH
Q 016631 347 VKRV 350 (386)
Q Consensus 347 v~~~ 350 (386)
|.+-
T Consensus 79 i~~~ 82 (84)
T cd08317 79 IVEK 82 (84)
T ss_pred HHHH
Confidence 8764
No 67
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=25.39 E-value=2.4e+02 Score=19.60 Aligned_cols=75 Identities=12% Similarity=0.180 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHHHHHHhh---c-C--CCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCC-ccCHHHHHHHHh
Q 016631 268 PDCLDDLAYAIMYETTKLA---Y-R--VSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGR-RIPFAELFARID 340 (386)
Q Consensus 268 ~~~~~~~~~~~~~~i~~l~---~-~--~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~ 340 (386)
|..+++++..+.+.+.... . | |+.+||..+............. .......+....-..++ ..+++++...+.
T Consensus 2 ~~~le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~-~~~~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 2 PTQLEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQK-DPMLVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhccccc-CHHHHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 3456777777777776665 2 3 8999998877654433222222 33344445444322222 245667666665
Q ss_pred cCC
Q 016631 341 SVD 343 (386)
Q Consensus 341 ~vt 343 (386)
.++
T Consensus 81 ~l~ 83 (93)
T cd05026 81 ALT 83 (93)
T ss_pred HHH
Confidence 553
No 68
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=25.25 E-value=1.2e+02 Score=24.18 Aligned_cols=37 Identities=8% Similarity=0.124 Sum_probs=31.1
Q ss_pred cccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 114 KTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 114 ~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
.=++.+++.++.+. .|.++.++++|.--++++.+.++
T Consensus 113 gli~~~~v~~lL~~--rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 113 GYLDVEEVVEALQE--RPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCcCHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhCc
Confidence 45788999999976 79999999999988888877754
No 69
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.01 E-value=1.5e+02 Score=25.83 Aligned_cols=36 Identities=14% Similarity=0.269 Sum_probs=19.3
Q ss_pred cccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHH
Q 016631 114 KTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQV 151 (386)
Q Consensus 114 ~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~ 151 (386)
++++++++++..+.. +.++.+.++|.++++.+.++.
T Consensus 216 D~~~~e~l~~~v~~~--~~~i~leAsGGIt~~ni~~~a 251 (277)
T PRK05742 216 DELSLDDMREAVRLT--AGRAKLEASGGINESTLRVIA 251 (277)
T ss_pred CCCCHHHHHHHHHHh--CCCCcEEEECCCCHHHHHHHH
Confidence 445556665555422 235556666666666655554
No 70
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.93 E-value=1.2e+02 Score=23.27 Aligned_cols=39 Identities=13% Similarity=0.256 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhc
Q 016631 118 KEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFT 156 (386)
Q Consensus 118 ~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~ 156 (386)
.+.++.+|++||....-.++|+-.-+.+++++.=.+..+
T Consensus 71 qd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ 109 (180)
T KOG0071|consen 71 QDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHR 109 (180)
T ss_pred chhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHH
Confidence 367999999999988888888777776666655444433
No 71
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=24.51 E-value=1.9e+02 Score=25.31 Aligned_cols=45 Identities=11% Similarity=0.103 Sum_probs=23.9
Q ss_pred HHHHHHhcCCeeeeeec------ceEEEEEEEeccccHHHHHHHHHHhhcC
Q 016631 14 LEEEIENMGGHLNAYTS------REQTTYYAKVLDKDVNNALDILADILQN 58 (386)
Q Consensus 14 l~~~l~~~g~~~~~~t~------~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 58 (386)
..+.+...|..+..... .....+.++++...+-.+-....+++..
T Consensus 52 a~~if~~l~~~v~~~~~dG~~v~~G~~i~~~~G~a~~ll~~eR~alN~l~~ 102 (284)
T PRK06096 52 ACKMLTTLGLTIDDAVSDGSQANAGQRLISAQGNAAALHQGWKAVQNVLEW 102 (284)
T ss_pred HHHHHHHcCCEEEEEeCCCCEeCCCCEEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 34445555655554433 3556677777776654444444444433
No 72
>PF14659 Phage_int_SAM_3: Phage integrase, N-terminal SAM-like domain; PDB: 2KD1_A 2KOB_A 2KHQ_A 3LYS_E 2KIW_A 2KKP_A.
Probab=24.29 E-value=67 Score=19.55 Aligned_cols=18 Identities=11% Similarity=0.447 Sum_probs=11.8
Q ss_pred HHhcCCHHHHHHHHHHhh
Q 016631 338 RIDSVDASTVKRVANRFI 355 (386)
Q Consensus 338 ~i~~vt~~dv~~~~~~~l 355 (386)
.|.+||+.+|+++.++++
T Consensus 41 ~i~~It~~~i~~~~~~l~ 58 (58)
T PF14659_consen 41 KIKDITPRDIQNFINELL 58 (58)
T ss_dssp BGGG--HHHHHHHHHHH-
T ss_pred cHHHCCHHHHHHHHHHcC
Confidence 367789999999887753
No 73
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=24.12 E-value=1.2e+02 Score=24.31 Aligned_cols=37 Identities=8% Similarity=0.215 Sum_probs=30.9
Q ss_pred cccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 114 KTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 114 ~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
.=++.+++.++.+. .|.++.++++|.--++++.+.++
T Consensus 131 gli~~eeVl~~L~~--rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 131 GLIPETEVLEFLEK--RPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCccHHHHHHHHHh--CCCCCEEEEECCCCCHHHHHhCC
Confidence 44788999999986 79999999999988888776643
No 74
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=23.22 E-value=99 Score=24.14 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=24.4
Q ss_pred ccCHHHHHHHHHhhCC--CCCeEEEEeCC-CCHHHH
Q 016631 115 TITKEHLQNYIHTHYT--APRMVIAASGA-VKHEEV 147 (386)
Q Consensus 115 ~i~~~~l~~~~~~~~~--~~~~~l~i~G~-~~~~~~ 147 (386)
.-+.+.++.|...+-+ .+-+.+.|+|| +|.++-
T Consensus 98 rdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 98 RDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE 133 (218)
T ss_pred hHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh
Confidence 4467888999887643 56789999998 676653
No 75
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=22.62 E-value=2e+02 Score=25.27 Aligned_cols=25 Identities=4% Similarity=-0.177 Sum_probs=13.2
Q ss_pred eEEEEEEEeccccHHHHHHHHHHhh
Q 016631 32 EQTTYYAKVLDKDVNNALDILADIL 56 (386)
Q Consensus 32 ~~~~~~~~~~~~~l~~~l~~l~~~~ 56 (386)
....+.+.++...+-.+-....+++
T Consensus 87 g~~i~~~~G~a~~ll~~eR~~lN~l 111 (288)
T PRK07428 87 GQVVAEIEGPLDALLMGERVALNLA 111 (288)
T ss_pred CCEEEEEEEcHHHHHHHHHHHHHHH
Confidence 4566677777665443333333333
No 76
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=22.60 E-value=2.1e+02 Score=17.97 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=33.5
Q ss_pred HHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhh
Q 016631 12 RDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADIL 56 (386)
Q Consensus 12 ~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~ 56 (386)
..+...|...|+.+...+. ....+++-.+.++.+.++..|++.+
T Consensus 19 ~~if~aL~~~~I~v~~~~~-Se~~is~~v~~~~~~~av~~Lh~~f 62 (64)
T cd04937 19 AKIVGALSKEGIEILQTAD-SHTTISCLVSEDDVKEAVNALHEAF 62 (64)
T ss_pred HHHHHHHHHCCCCEEEEEc-CccEEEEEEcHHHHHHHHHHHHHHh
Confidence 4677778888998865553 4566777778888999999888765
No 77
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=22.45 E-value=1e+02 Score=23.55 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=21.7
Q ss_pred HHHhhc-CCCHHHHHHHHHHHHHhhH
Q 016631 282 TTKLAY-RVSEADVTRARNQLKSSLL 306 (386)
Q Consensus 282 i~~l~~-~~~~~el~~~k~~~~~~~~ 306 (386)
+.+|.. |+|++|++..+.++...+.
T Consensus 3 FDRLl~~GFS~~eI~~LR~QF~~~~~ 28 (140)
T PF13373_consen 3 FDRLLSAGFSPEEIQDLRSQFHSIYG 28 (140)
T ss_pred hhHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 456777 9999999999999988887
No 78
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=22.38 E-value=2.4e+02 Score=18.78 Aligned_cols=43 Identities=7% Similarity=0.074 Sum_probs=32.5
Q ss_pred hHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHH
Q 016631 11 ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILAD 54 (386)
Q Consensus 11 ~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~ 54 (386)
..++.+..+.+++.+ ...+.+++.+.+++.+++++.++++|..
T Consensus 16 r~ei~~l~~~f~a~i-vd~~~~~~iie~tG~~~kid~fi~~l~~ 58 (75)
T PF10369_consen 16 RSEILQLAEIFRARI-VDVSPDSIIIELTGTPEKIDAFIKLLKP 58 (75)
T ss_dssp HHHHHHHHHHTT-EE-EEEETTEEEEEEEE-HHHHHHHHHHSTG
T ss_pred HHHHHHHHHHhCCEE-EEECCCEEEEEEcCCHHHHHHHHHHhhh
Confidence 457888888888774 4456678999999999999999988765
No 79
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=22.11 E-value=3e+02 Score=23.82 Aligned_cols=72 Identities=13% Similarity=0.175 Sum_probs=37.5
Q ss_pred CCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCC----CChHHHHHHHHHHHHHHHH
Q 016631 6 TEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST----FDQARITRERDVILREMEE 79 (386)
Q Consensus 6 t~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~----~~~~~~~~~k~~~~~~~~~ 79 (386)
+++|+..++.+.|... ...+.+....++|-++-..=.-+..|+.+.+++..-. |++++++.....+..+.+.
T Consensus 65 ~~~y~~~~f~~dLk~~--~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~ 140 (268)
T PF12780_consen 65 TKGYSIKDFKEDLKKA--LQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKA 140 (268)
T ss_dssp STTTHHHHHHHHHHHH--HHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHH--HHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHH
Confidence 4556655555444432 1122234556777776543223456677777766533 7777777666666555443
No 80
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=21.95 E-value=2.3e+02 Score=25.15 Aligned_cols=65 Identities=15% Similarity=0.118 Sum_probs=43.9
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEE-Ee--ccccHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 016631 2 IFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYA-KV--LDKDVNNALDILADILQNSTFDQARITRERD 71 (386)
Q Consensus 2 ~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~-~~--~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~ 71 (386)
+|.|+-..++.++.+.+...|+.+..+++.....+-+ .. .+.++..+-++ -=|.+++++|-+..+
T Consensus 239 v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~-----gi~ii~e~~f~~ll~ 306 (313)
T PRK06063 239 ALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQL-----GVPVLDEAAFLELLR 306 (313)
T ss_pred EEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHc-----CCccccHHHHHHHHH
Confidence 5778877899999999999999998888775444422 11 12455555552 335677777765443
No 81
>PF13075 DUF3939: Protein of unknown function (DUF3939)
Probab=21.92 E-value=1.9e+02 Score=21.96 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=27.7
Q ss_pred HhcCCHHHHHHHHHHhhcc--CCc-EEEEecCCCCCCChHHHHHhhhh
Q 016631 339 IDSVDASTVKRVANRFIYD--RDI-AIAAMGPIQGLPDYNWFRRRTYW 383 (386)
Q Consensus 339 i~~vt~~dv~~~~~~~l~~--~~~-~~~i~gp~~~~~~~~~~~~~~~~ 383 (386)
+..||.++|+++..+|... +.+ ..+++.+ +.-=++..++..|..
T Consensus 7 ~~~vTldevr~Av~~f~~~lp~gi~rt~lv~~-d~~iD~~~L~~yL~g 53 (140)
T PF13075_consen 7 IVDVTLDEVRRAVHQFEEDLPKGINRTILVND-DQSIDFERLAPYLGG 53 (140)
T ss_pred cccccHHHHHHHHHHHHHhCccCCceEEEEcC-CceecHHHHhhhcCC
Confidence 5679999999999997653 333 3444444 333456666665543
No 82
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=21.63 E-value=2.4e+02 Score=20.42 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=38.1
Q ss_pred ccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631 115 TITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (386)
Q Consensus 115 ~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 160 (386)
.-+.+++.+.++.+.....+.+++...+=.+.++..++.+-..+|.
T Consensus 44 ~Tt~~eiedaF~~f~~RdDIaIiLInq~~Ae~iR~~vD~h~~~vPA 89 (121)
T KOG3432|consen 44 KTTVEEIEDAFKSFTARDDIAIILINQFIAEMIRDRVDAHTQAVPA 89 (121)
T ss_pred cCCHHHHHHHHHhhccccCeEEEEEhHHHHHHHHHHHHhccccCCe
Confidence 4688999999999999999999998888778888888877655554
No 83
>cd07055 BMC_like_2 Bacterial Micro-Compartment (BMC)-like domain 2. BMC like 2 domains exist in cyanobacteria, proteobacteria, and actinobacteria and are homologs of carboxysome shell proteins. They might be encoded from putative organelles involved in unknown metabolic process. Although it has been suggested that these carboxysome shell protein homologs form hexamers and further assemble into the flat facets of the polyhedral bacterial organelles shell at present no experimental evidence exists to directly support this view.
Probab=20.83 E-value=1.2e+02 Score=19.33 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=10.0
Q ss_pred CCCCeEEE-EeCCCC
Q 016631 130 TAPRMVIA-ASGAVK 143 (386)
Q Consensus 130 ~~~~~~l~-i~G~~~ 143 (386)
+|+++..+ |.|++.
T Consensus 34 CPq~~~~l~i~Gdvs 48 (61)
T cd07055 34 CPQHMITLAIFGETS 48 (61)
T ss_pred CCCceEEEEEEecHH
Confidence 58876655 899873
No 84
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=20.61 E-value=1.8e+02 Score=20.42 Aligned_cols=27 Identities=7% Similarity=0.204 Sum_probs=23.9
Q ss_pred cceeEEEeeeCcccHHHHHHHHHHHHH
Q 016631 257 TGLFGVYAVAKPDCLDDLAYAIMYETT 283 (386)
Q Consensus 257 ~~~~~i~~~~~~~~~~~~~~~~~~~i~ 283 (386)
.|.-.|.+.++..|++++++++.+.++
T Consensus 75 ~gvt~IHciVde~NvdeIIeLl~kTFk 101 (102)
T PF03197_consen 75 SGVTKIHCIVDENNVDEIIELLQKTFK 101 (102)
T ss_pred cCceEEEEEEccCCHHHHHHHHHHHhc
Confidence 678889999999999999999988764
No 85
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=20.38 E-value=3.2e+02 Score=19.17 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCC-ccCHHHHHHHHhcCCHH
Q 016631 271 LDDLAYAIMYETTKLAY---RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGR-RIPFAELFARIDSVDAS 345 (386)
Q Consensus 271 ~~~~~~~~~~~i~~l~~---~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~vt~~ 345 (386)
++.++..+...+.+... -++..||......-+..+.....++.. .+.+....-.+++ ..+++++...|..++..
T Consensus 3 LE~ai~~lI~~FhkYaG~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~-vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~a 80 (91)
T cd05024 3 LEHSMEKMMLTFHKFAGEKNYLNRDDLQKLMEKEFSEFLKNQNDPMA-VDKIMKDLDDCRDGKVGFQSFFSLIAGLLIA 80 (91)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCHHHHHHHHHHHhHHHHcCCCCHHH-HHHHHHHhCCCCCCcCcHHHHHHHHHHHHHH
Confidence 45677777777776642 589999999988888887776555543 3444433222222 23678888888777543
Done!