Query 016631
Match_columns 386
No_of_seqs 146 out of 1109
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 16:50:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_A Ubiquinol-cytochrome C 100.0 2.1E-56 7.3E-61 415.7 41.3 385 1-386 62-446 (446)
2 3eoq_A Putative zinc protease; 100.0 1.9E-55 6.5E-60 404.4 41.7 354 1-369 51-405 (406)
3 3hdi_A Processing protease; CA 100.0 1.3E-54 4.3E-59 401.0 42.7 358 1-374 51-410 (421)
4 1hr6_B Beta-MPP, mitochondrial 100.0 1.7E-53 6E-58 396.1 42.9 381 1-381 56-441 (443)
5 1hr6_A Alpha-MPP, mitochondria 100.0 2.1E-52 7.2E-57 391.5 45.3 377 1-382 54-451 (475)
6 3ami_A Zinc peptidase; alpha/b 100.0 4.1E-53 1.4E-57 393.5 38.0 365 1-376 56-430 (445)
7 1pp9_B Ubiquinol-cytochrome C 100.0 5.8E-50 2E-54 372.0 42.5 365 1-376 72-438 (439)
8 3gwb_A Peptidase M16 inactive 100.0 1.8E-50 6.2E-55 374.9 38.3 359 1-372 62-425 (434)
9 3cx5_A Cytochrome B-C1 complex 100.0 2E-50 7E-55 374.2 36.2 375 1-386 50-431 (431)
10 3amj_B Zinc peptidase inactive 100.0 8E-49 2.8E-53 362.6 38.4 356 1-371 53-417 (424)
11 3d3y_A Uncharacterized protein 100.0 6.7E-46 2.3E-50 343.2 37.4 353 1-369 49-423 (425)
12 1q2l_A Protease III; hydrolase 100.0 3.2E-44 1.1E-48 362.8 33.6 359 1-371 70-442 (939)
13 3go9_A Insulinase family prote 100.0 6.2E-43 2.1E-47 327.4 31.3 356 1-379 77-459 (492)
14 2fge_A Atprep2;, zinc metallop 100.0 1.2E-42 4.2E-47 352.7 28.0 359 1-371 82-487 (995)
15 3s5m_A Falcilysin; M16 metallo 100.0 8.6E-42 2.9E-46 342.7 32.0 361 1-370 134-589 (1193)
16 3cww_A Insulysin, insulin-degr 100.0 1.7E-40 5.7E-45 337.2 31.2 355 1-369 84-456 (990)
17 3cx5_B Cytochrome B-C1 complex 100.0 2.3E-38 8E-43 285.2 21.9 311 1-376 38-351 (352)
18 2fge_A Atprep2;, zinc metallop 100.0 7.5E-33 2.6E-37 281.0 25.0 346 4-373 604-980 (995)
19 1q2l_A Protease III; hydrolase 100.0 6.9E-31 2.3E-35 265.5 32.1 330 21-369 567-907 (939)
20 3cww_A Insulysin, insulin-degr 100.0 1.4E-29 4.8E-34 257.1 29.8 334 22-371 586-936 (990)
21 3s5m_A Falcilysin; M16 metallo 100.0 4.7E-30 1.6E-34 258.0 20.9 349 2-369 767-1174(1193)
22 3ih6_A Putative zinc protease; 99.9 2.2E-25 7.4E-30 183.3 19.1 176 185-370 19-196 (197)
23 3hdi_A Processing protease; CA 98.7 6.6E-07 2.3E-11 81.8 16.9 186 184-383 17-206 (421)
24 3eoq_A Putative zinc protease; 98.6 7.3E-07 2.5E-11 81.1 15.7 185 184-382 17-205 (406)
25 3cx5_B Cytochrome B-C1 complex 98.6 4.7E-07 1.6E-11 80.7 12.9 169 184-366 6-175 (352)
26 3amj_B Zinc peptidase inactive 98.6 7.2E-07 2.4E-11 81.6 14.4 173 185-370 20-200 (424)
27 1pp9_A Ubiquinol-cytochrome C 98.6 2.4E-06 8.1E-11 78.8 17.1 176 181-369 25-204 (446)
28 1hr6_B Beta-MPP, mitochondrial 98.5 2.6E-06 9E-11 78.3 15.8 168 189-369 27-198 (443)
29 3gwb_A Peptidase M16 inactive 98.5 9.5E-07 3.2E-11 81.1 12.7 172 185-369 30-206 (434)
30 3ami_A Zinc peptidase; alpha/b 98.5 3.6E-06 1.2E-10 77.5 16.4 172 185-369 23-199 (445)
31 1hr6_A Alpha-MPP, mitochondria 98.4 6.2E-06 2.1E-10 76.6 15.4 175 181-369 17-195 (475)
32 1pp9_B Ubiquinol-cytochrome C 98.3 7.4E-06 2.5E-10 75.2 14.1 167 187-367 41-211 (439)
33 3d3y_A Uncharacterized protein 98.3 5.9E-06 2E-10 75.4 13.2 173 187-369 21-210 (425)
34 3cx5_A Cytochrome B-C1 complex 98.3 2.9E-05 9.8E-10 71.0 16.7 165 185-369 17-189 (431)
35 3ih6_A Putative zinc protease; 98.2 2E-05 6.8E-10 63.7 12.6 108 32-142 83-194 (197)
36 3go9_A Insulinase family prote 97.4 0.0001 3.5E-09 68.6 4.8 179 188-384 47-236 (492)
37 3lh2_S 4E10_1VI7A_S0_002_N (T8 55.4 31 0.0011 22.0 5.4 47 12-58 20-66 (76)
38 2v75_A Nuclear polyadenylated 48.1 58 0.002 21.8 5.6 53 303-355 19-72 (104)
39 1g6u_A Domain swapped dimer; d 43.1 39 0.0013 18.2 4.2 25 276-300 3-28 (48)
40 3ov5_A VIRB7 (XAC2622), unchar 41.3 38 0.0013 21.8 3.8 43 99-141 33-75 (85)
41 3gnn_A Nicotinate-nucleotide p 41.0 29 0.001 29.2 4.3 40 112-153 234-273 (298)
42 2l4w_A Uncharacterized protein 36.2 51 0.0017 22.6 4.0 43 99-141 63-105 (120)
43 2vi8_A Serine hydroxymethyltra 33.7 89 0.003 27.1 6.7 65 9-74 322-401 (405)
44 2cok_A Poly [ADP-ribose] polym 31.6 43 0.0015 23.5 3.3 61 2-67 17-81 (113)
45 3paj_A Nicotinate-nucleotide p 28.2 77 0.0026 27.0 4.9 39 112-152 256-294 (320)
46 1k8r_B Protein kinase BYR2; si 27.0 32 0.0011 22.9 1.8 43 337-379 48-90 (110)
47 2zrr_A Mundticin KS immunity p 25.4 1.8E+02 0.0061 20.4 6.2 54 266-319 29-82 (118)
48 1g5t_A COB(I)alamin adenosyltr 24.8 1.1E+02 0.0038 23.9 4.9 39 112-152 134-172 (196)
49 2gqc_A Rhomboid intramembrane 22.5 1.4E+02 0.0049 18.6 4.3 52 9-61 13-64 (70)
50 1fad_A Protein (FADD protein); 21.8 1.8E+02 0.0063 19.3 6.9 73 276-355 22-97 (99)
51 1qap_A Quinolinic acid phospho 21.7 1.1E+02 0.0038 25.7 4.7 39 113-153 234-272 (296)
52 3ewt_E Tumor necrosis factor r 21.4 64 0.0022 15.6 1.8 17 337-353 6-22 (25)
53 2k6g_A Replication factor C su 21.4 58 0.002 22.6 2.4 62 2-68 39-103 (109)
54 1zav_U 50S ribosomal protein L 20.9 97 0.0033 15.7 2.9 23 332-354 3-25 (30)
55 2w7n_A TRFB transcriptional re 20.7 2.1E+02 0.0071 19.5 6.2 80 287-378 3-90 (101)
56 3tqv_A Nicotinate-nucleotide p 20.4 86 0.0029 26.2 3.6 38 113-152 224-261 (287)
57 2ebu_A Replication factor C su 20.1 73 0.0025 22.3 2.7 35 2-36 29-64 (112)
58 3l0g_A Nicotinate-nucleotide p 20.0 88 0.003 26.3 3.6 38 113-152 233-270 (300)
No 1
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=2.1e-56 Score=415.74 Aligned_cols=385 Identities=42% Similarity=0.774 Sum_probs=340.9
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (386)
|+|+||+++|..++.+.++.+|+++|++|+.++|.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++..
T Consensus 62 mlf~GT~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~ 141 (446)
T 1pp9_A 62 LAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQEN 141 (446)
T ss_dssp HTTSCBSSSTTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCHHHHHHHHHHcCCEEEEEEcCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (386)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 160 (386)
.++|...+.+.+...+|+++||+++.+|+.+.|++++.++|++||++||.|+|++++|+||++++++.++++++|+.|+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 221 (446)
T 1pp9_A 142 DTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSG 221 (446)
T ss_dssp TTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCS
T ss_pred hcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 016631 161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240 (386)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre 240 (386)
...+..+..+ ..+...+..+.+..++.+++++.++|+.+++++++.+++.|++.+||++....|+|++++|+||+.+|+
T Consensus 222 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~~~~~~~~g~~~~srL~~~lr~ 300 (446)
T 1pp9_A 222 TYDEDAVPTL-SPCRFTGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLASIAAT 300 (446)
T ss_dssp CCCSSCCCCC-CCCCCCCEEEEEEETTSSSEEEEEEEEECCTTCTHHHHHHHHHHHHCEEETTCSCGGGCSSHHHHHHHH
T ss_pred CCCCCccccC-CCCCCCCceEEEecCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCCCCHHHHHHHh
Confidence 5443221110 122222333333455678899999999998888999999999999986544344445689999999999
Q ss_pred ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHH
Q 016631 241 NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIG 320 (386)
Q Consensus 241 ~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~ 320 (386)
+|++|+++++...+.+.|.|.+++.++|++..++++.+.++++++..+++++||+++|..++.++....+++..++..++
T Consensus 301 ~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~ 380 (446)
T 1pp9_A 301 NKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVLRGKNLLRNALVSHLDGTTPVCEDIG 380 (446)
T ss_dssp HTCCSEEEEEEEECSSCEEEEEEEEECTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHH
T ss_pred cCCeEEEEEecccCCCCeEEEEEEEECHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 89999998877666778999999999999999999999999999876899999999999999999999899999998887
Q ss_pred HHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhhhhccC
Q 016631 321 RQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 386 (386)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~~~~~~ 386 (386)
..++..|.+.+++++.+.|.+||++||++++++++.+++.+++++||..++|.++++...+.|+||
T Consensus 381 ~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 446 (446)
T 1pp9_A 381 RSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMFWLRF 446 (446)
T ss_dssp HHHHHTSSCCCHHHHHHHHHTCCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTC----
T ss_pred HHHHHcCCCCCHHHHHHHHHcCCHHHHHHHHHHHcCCCCcEEEEECCcccCcCHHHHHhhHHhhcC
Confidence 776567877778888999999999999999999999888999999999999999999999999886
No 2
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-55 Score=404.42 Aligned_cols=354 Identities=23% Similarity=0.344 Sum_probs=323.6
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (386)
|+|+||+++|..++.+.++.+|+++|++|+.++|.|++++++++++.+|+++.+++ +|.|++++|+++|+.+.+|++..
T Consensus 51 mlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~ 129 (406)
T 3eoq_A 51 MVFKGPEDMDALAVNRAFDRMGAQYNAFTSEEATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARY 129 (406)
T ss_dssp HHTTCCTTCCHHHHHHHHHHTTCEEEEEECSSCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHhCCCccceecCCeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999 99999999999999999999998
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (386)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 160 (386)
.++|...+.+.+.+.+|+++||+++++|+.++|++++.++|++||++||.|+||+++|+||+|++++.++++++|+.|+.
T Consensus 130 ~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 209 (406)
T 3eoq_A 130 QDRPGFMAYEWARARFFQGHPLGNSVLGTRESITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPE 209 (406)
T ss_dssp HHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 016631 161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240 (386)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre 240 (386)
.+.+.. . .+....+..+.+..+..+++++.++|++++.++++.+++.|++.+||+ +++|+|++.||+
T Consensus 210 ~~~~~~-~---~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~d~~~l~vl~~iLgg---------~~~srL~~~lre 276 (406)
T 3eoq_A 210 GEAERA-Y---PPLTPAFGVEERPYEKARALYLVALFPGVAYQEEARFPGQVLAHLLGE---------EGSGRLHFALVD 276 (406)
T ss_dssp CCCCCC-C---CCCCCCCEEEEEECTTCSSEEEEEEEECCCTTCTTHHHHHHHHHHHHC---------TTTSHHHHHTTT
T ss_pred CCCCCC-C---CCCCCCCceEEEecCCccceEEEEEecCCCCCCchHHHHHHHHHHhCC---------CcchHHHHHHHH
Confidence 543322 1 111112223333333338999999999999889999999999999985 568999999999
Q ss_pred ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhccCchHHHHHH
Q 016631 241 NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDI 319 (386)
Q Consensus 241 ~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~ 319 (386)
+|++|+++++...+.+.|.|.+++.+++++..++++.+.++++++++ ++|++||+++|+.++.++....+++..++..+
T Consensus 277 ~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~ 356 (406)
T 3eoq_A 277 KGLAEVASFGLEEADRAGTFHAYVQADPARKGEVLAVLQEELDRLGREGVGEEEVERAKTPLATGLVFAGETPMQRLFHL 356 (406)
T ss_dssp TTSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred cCCeeEEEEEecccCCceEEEEEEEeCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999988888889999999999999999999999999999988 99999999999999999999999999999999
Q ss_pred HHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 320 GRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
+...+..+.+.+++++.+.|.+||++||++++++||.+++. ++++||..
T Consensus 357 ~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 357 GMEYLYTGRYLSLEEVKARVQRVTSREVNALLERGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp HHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHTTTTTSCE-EEEEECCC
T ss_pred HHHHHhcCCCCCHHHHHHHHHhCCHHHHHHHHHHhcCcccE-EEEECCCC
Confidence 88877778777889999999999999999999999998887 99999974
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.3e-54 Score=401.02 Aligned_cols=358 Identities=28% Similarity=0.538 Sum_probs=328.8
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (386)
|+|+||++++..++.+.++..|+.+|++|+.+.+.|++++++++++.+|+++.+++.+|.|++++++++|+.+.++++..
T Consensus 51 ~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~ 130 (421)
T 3hdi_A 51 MFFKGTNTRSAQEIAEFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMV 130 (421)
T ss_dssp HTTSBBSSSBHHHHHHHHHTTTSCEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCCCHHHHHHHHHHhCCceeeeeccceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (386)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 160 (386)
.++|...+.+.+.+.+|+++|++++.+|+.+.|++++.++|++||++||.|+|++++|+||++ +++.++++++|+.|+.
T Consensus 131 ~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~ 209 (421)
T 3hdi_A 131 DDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKP 209 (421)
T ss_dssp HTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCC
T ss_pred hCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999 9999999999999987
Q ss_pred CCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 016631 161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240 (386)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre 240 (386)
...+... ..+...+ .......+.+++++.++|++++.++++.+++.|++.+||+ +++|+||+.||+
T Consensus 210 ~~~~~~~----~~~~~~~-~~~~~~~~~~q~~v~~~~~~~~~~~~d~~~l~vl~~iLgg---------~~~srL~~~lRe 275 (421)
T 3hdi_A 210 TTYNYQG----EKPMFLP-NRIVRKKETEQAHLCLGYPGLPIGDKDVYALVLLNNVLGG---------SMSSRLFQDIRE 275 (421)
T ss_dssp CCCCCCC----CCCCCCC-CEEEEECCCSEEEEEEEEECCCTTCTTHHHHHHHHHHHTS---------SSSSHHHHHHTT
T ss_pred CCCCCCC----CCCCCCC-ceEEecCCCCceEEEEEEecCCCCCchHHHHHHHHHHhCC---------CcccHHHHHHHH
Confidence 6543211 1222222 3344556778999999999988889999999999999984 578999999997
Q ss_pred -ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhccCchHHHHH
Q 016631 241 -NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAED 318 (386)
Q Consensus 241 -~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~ 318 (386)
+|++|+++++...+.+.+.|.+++.++|+++.++++.+.+++++++. +++++||+++|..++.++....+++..++..
T Consensus 276 ~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~ 355 (421)
T 3hdi_A 276 KRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQLDDLVYSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNSRMSR 355 (421)
T ss_dssp TTCCCSCEEEEEEECSSCEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCEEEEEEeecccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 59999999988777889999999999999999999999999999988 9999999999999999999999999999998
Q ss_pred HHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCCh
Q 016631 319 IGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDY 374 (386)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~ 374 (386)
++...+..|...+.+++.+.|.+||++||++++++++ +++.+++++||..++|+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~-~~~~~~~vvgp~~~ip~~ 410 (421)
T 3hdi_A 356 NGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILL-SASPSISLINANGELPKA 410 (421)
T ss_dssp HHHHHHHTSCCCCHHHHHHHHHHCCHHHHHHHHHHHT-TSCCEEEEEESSCSCCSC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHHc-ccCcEEEEECchhcCcch
Confidence 8777666777777889999999999999999999999 888999999999999975
No 4
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=1.7e-53 Score=396.05 Aligned_cols=381 Identities=39% Similarity=0.691 Sum_probs=337.0
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (386)
|+|+||+++|..++.+.++.+|+++|++|+.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++..
T Consensus 56 ~~~~Gt~~~~~~~l~~~l~~~g~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~ 135 (443)
T 1hr6_B 56 LAFKGTQNRPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEV 135 (443)
T ss_dssp HTTSBBSSCBHHHHHHHHHHTTCEEEEEECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCCHHHHHHHHHHcCCeEEEEECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (386)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 160 (386)
.++|...+.+.+...+|+++|++++++|+.+.|++++.++|++||++||.|+|++++|+||++++++.++++++|+.|+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~ 215 (443)
T 1hr6_B 136 DKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPK 215 (443)
T ss_dssp TTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCC
T ss_pred hCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCCccccccc-CCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhc
Q 016631 161 DPTTASQLVA-NEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVG 239 (386)
Q Consensus 161 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lr 239 (386)
...+...... ...+.+.+..+.+..++.+++++.++|+.+++++++.+++.|++.+|+++....|+|++++|+|++.+|
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lr 295 (443)
T 1hr6_B 216 SESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAAS 295 (443)
T ss_dssp CSSCCCTTSCCSSCCCCCCEEEEEECTTCSEEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHH
T ss_pred CCCCCCcccccCCCCCCCCCeEEeccCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHH
Confidence 5433221100 011222233333345567889999999998888899999999999998533223444567899999999
Q ss_pred c-ccceeeeeecccccCCcceeEEEeeeC--cccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhccCchHH
Q 016631 240 I-NEIAESMMAFNTNYKDTGLFGVYAVAK--PDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPV 315 (386)
Q Consensus 240 e-~gl~y~~~~~~~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~~~~~~~ 315 (386)
| +|++|+++++...+.+.+.|.+++.++ |+++.++++.+.++++++.. +++++||+++|..++.++....+++..+
T Consensus 296 e~~glay~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~ 375 (443)
T 1hr6_B 296 QNGSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAI 375 (443)
T ss_dssp STTCSCSEEEEEEEECSSCEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHH
T ss_pred HHcCCeEEEEeeecCCCCceEEEEEEEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHH
Confidence 5 799999988877777789999999999 99999999999999999988 8999999999999999999998999999
Q ss_pred HHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhh
Q 016631 316 AEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRT 381 (386)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~ 381 (386)
+..+....+..|.+.+++++.+.|.+||++||++++++|+.+++.+++++||...+|+.+++...+
T Consensus 376 ~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~ 441 (443)
T 1hr6_B 376 VEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKL 441 (443)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHHSSSCCEEEEEEECGGGCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCCcCCHHHHHHHHHhCCHHHHHHHHHHHhccCCcEEEEECCcccCccHHHHHHHh
Confidence 988887655567777788899999999999999999999998889999999999999999987765
No 5
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=2.1e-52 Score=391.54 Aligned_cols=377 Identities=28% Similarity=0.413 Sum_probs=336.9
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (386)
|+|+||+++|..++.+.++..|+.+|++|+.+.|.|++++++++++.+|++|.+++.+|.|++++|+++|+++.++++..
T Consensus 54 m~f~Gt~~~~~~~~~~~le~~G~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~ 133 (475)
T 1hr6_A 54 LAFKSTEHVEGRAMAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEV 133 (475)
T ss_dssp TTTSCBTTBCHHHHHHHHHHTTSCEEEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCCHHHHHHHHHHcCCEEEEEEccCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (386)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 160 (386)
.++|...+.+.+...+|+++||+++.+|+.+.|++++.++|++||++||.|+||+++|+| +|++++.++++++|+.|+.
T Consensus 134 ~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~d~~~~~~~i~~~f~~~~~ 212 (475)
T 1hr6_A 134 WMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPENTVAAFVG-VPHEKALELTGKYLGDWQS 212 (475)
T ss_dssp TTCHHHHHHHHHHHHHTTTSGGGSCSSCCGGGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHHHTTCCC
T ss_pred hcCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhcCHHHHHHHHHHhCCcccEEEEEeC-CCHHHHHHHHHHHhccCCC
Confidence 899999999999999999999999999999999999999999999999999999999999 9999999999999999987
Q ss_pred CCCcccccccCCCCccCCCceEEec-----CCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCC--CCCCCcccH
Q 016631 161 DPTTASQLVANEPAIFTGSEVRIID-----DDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNS--VGGKHMGSE 233 (386)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~--~~~~~~~s~ 233 (386)
...+... ..+.+.+....+.. .+.+++++.++|+++++++++.+++.|++.+||++..|. |+|.++.++
T Consensus 213 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~ 288 (475)
T 1hr6_A 213 THPPITK----KVAQYTGGESCIPPAPVFGNLPELFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSR 288 (475)
T ss_dssp CCCCCCC----CCCCCCCEEEEECCCCCCSSSCCCEEEEEEEECCCTTCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSH
T ss_pred CCCCCCC----CCCCCcCCeEEEecccccCCCccceEEEEEEecCCCCCccHHHHHHHHHHhCCCcccccCCCCCCcCCH
Confidence 5433111 12222222222221 466788999999988888889999999999999765444 777889999
Q ss_pred HHHHhcc-ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc----CCCHHHHHHHHHHHHHhhHhh
Q 016631 234 LAQRVGI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY----RVSEADVTRARNQLKSSLLLH 308 (386)
Q Consensus 234 L~~~lre-~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~el~~~k~~~~~~~~~~ 308 (386)
||+.||+ +|++|+++++...+.+.+.|.+++.++|+++.++++.+.++++++.+ ++|++||+++|+.++.++...
T Consensus 289 L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~ 368 (475)
T 1hr6_A 289 LYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMN 368 (475)
T ss_dssp HHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEEECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCeeEEEEeccccCCCceEEEEEEeCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999996 69999999988777778999999999999999999999999999875 599999999999999999998
Q ss_pred ccCchHHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhcc---------CCcEEEEecCCCCCCChHHHHH
Q 016631 309 IDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYD---------RDIAIAAMGPIQGLPDYNWFRR 379 (386)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~---------~~~~~~i~gp~~~~~~~~~~~~ 379 (386)
.+++..++..+++.++..|.+.+.+++.+.|.+||++||++++++++.+ ++.+++++||..++|+.+++.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 448 (475)
T 1hr6_A 369 LESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLK 448 (475)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHHTCCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHH
Confidence 8999999998888766678777788899999999999999999999987 5789999999999999999877
Q ss_pred hhh
Q 016631 380 RTY 382 (386)
Q Consensus 380 ~~~ 382 (386)
.+.
T Consensus 449 ~~~ 451 (475)
T 1hr6_A 449 AYG 451 (475)
T ss_dssp HTT
T ss_pred Hhc
Confidence 653
No 6
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=4.1e-53 Score=393.49 Aligned_cols=365 Identities=22% Similarity=0.325 Sum_probs=317.3
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH-H
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREME-E 79 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~-~ 79 (386)
|+|+||+++|..++.+.++.+|+++|++|+.+.|.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++ .
T Consensus 56 mlf~Gt~~~~~~~l~~~l~~~g~~~na~t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~ 135 (445)
T 3ami_A 56 MMFKGTKDVGPGEFSKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWR 135 (445)
T ss_dssp HTTSCBSSSCTTHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHT
T ss_pred hhcCCCCCCCHHHHHHHHHHhCCccccccCCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred hhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCC
Q 016631 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLS 159 (386)
Q Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~ 159 (386)
..++|...+.+.+.+.+|+++||+++++|+.++|++++.++|++||++||.|+||+++|+||+|++++.++++++|+.||
T Consensus 136 ~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~ 215 (445)
T 3ami_A 136 TDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLA 215 (445)
T ss_dssp GGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSC
T ss_pred ccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCC
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCC---CC-CchhhHHHHHHHHcCCCCCCCCCCCCcccHHH
Q 016631 160 ADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGAS---WT-DPDSIALMVMQAMLGSWNKNSVGGKHMGSELA 235 (386)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~-~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~ 235 (386)
....+....+ ..+...+........+.+++.+.++|+++. .+ .++.+++.+++.+|++ +++|||+
T Consensus 216 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~---------~~~srL~ 284 (445)
T 3ami_A 216 RVEAPARKQQ--GEPQQAGVRRVTVKAPAELPYLALAWHVPAIVDLDKSRDAYALEILAAVLDG---------YDGARMT 284 (445)
T ss_dssp CCCCCCCCCC--CCCCCCSCEEEEEEEECSSCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHS---------STTCHHH
T ss_pred CCCCCCCCCC--CCCCCCCceEEEEecCCCccEEEEEEEcCCcccccCChhHHHHHHHHHHHcC---------CcchHHH
Confidence 7543322111 112222222222333467888999999888 77 8899999999999984 5689999
Q ss_pred HHhc-cccceeeeeecccc-cCC-cceeEEEeeeCcc-cHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhcc
Q 016631 236 QRVG-INEIAESMMAFNTN-YKD-TGLFGVYAVAKPD-CLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHID 310 (386)
Q Consensus 236 ~~lr-e~gl~y~~~~~~~~-~~~-~~~~~i~~~~~~~-~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~~ 310 (386)
+.|| ++|++|+++++... ..+ .+.|.+++.+.++ +++++++.+.++|+++.+ |++++||+++|+.++.++....+
T Consensus 285 ~~lre~~gl~y~v~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~g~t~~el~~ak~~~~~~~~~~~~ 364 (445)
T 3ami_A 285 RQLVRGNKHAVSAGAGYDSLSRGQQGLFILEGVPSKGVTIAQLETDLRAQVRDIAAKGVTEAELSRVKSQMVAGKVYEQD 364 (445)
T ss_dssp HHTTTTSCCEEEEEEECCCCCSSCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHhhcCCcEEEEEeeccccccCCCCeEEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 9999 57999999987663 456 7999999999887 599999999999999998 99999999999999999999999
Q ss_pred CchHHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHH
Q 016631 311 GTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNW 376 (386)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~ 376 (386)
++..++..+....+..+....+.++.+.|++||.+||+++++++|.+++.+++++||.+..|..++
T Consensus 365 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~~~~~~~~~ 430 (445)
T 3ami_A 365 SLMGQATQIGGLEVLGLSWRDDDRFYQQLRSVTAAEVKAAAARLLTDDTLTVANLVPLPPDPKAQQ 430 (445)
T ss_dssp SHHHHHHHHHHHHTTTCCTTHHHHHHHHHHTCCHHHHHHHHHTTSCSTTEEEEEEEEECC------
T ss_pred CHHHHHHHHHHHHHcCCChHHHHHHHHHHHcCCHHHHHHHHHHHcCcCCeEEEEEccCccCccccc
Confidence 999999999877654444444688999999999999999999999998999999999988777654
No 7
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=5.8e-50 Score=371.97 Aligned_cols=365 Identities=23% Similarity=0.384 Sum_probs=325.5
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV 80 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 80 (386)
|+|+||+++|..++.+.++..|+++|++|+.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++..
T Consensus 72 ~~~~gt~~~~~~~~~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~ 151 (439)
T 1pp9_B 72 ASSLTTKGASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVA 151 (439)
T ss_dssp TTTSCBSSSCHHHHHHHHHHTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCcCCHHHHHHHHHHhCCeEEEEecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCC
Q 016631 81 EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSA 160 (386)
Q Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~ 160 (386)
.++|...+.+.+...+|+ +|++++.+|+.+.+++++.++|++||+++|.|+|++++|+|+ +++++.++++++|+ |+.
T Consensus 152 ~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~-~~~~~~~~~~~~~~-~~~ 228 (439)
T 1pp9_B 152 LQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKVTPVELHDYVQNHFTSARMALIGLGV-SHPVLKQVAEQFLN-IRG 228 (439)
T ss_dssp TTSHHHHHHHHHHHHHBS-SGGGSCSSCCGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESS-CHHHHHHHHHHHCC-CCC
T ss_pred HcCHHHHHHHHHHHHHhc-CCCCCCccCCHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCC-CHHHHHHHHHHHhC-CCC
Confidence 899999999999999999 999999999999999999999999999999999999999999 99999999999998 876
Q ss_pred CCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc
Q 016631 161 DPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI 240 (386)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre 240 (386)
...+.. ..+.+.+.... ...+.+++++.++|+.++.++++.+++.|++.+|+++..+. .|++++++||+.||+
T Consensus 229 ~~~~~~-----~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iLg~~~~~~-~~~g~~s~L~~~lRe 301 (439)
T 1pp9_B 229 GLGLSG-----AKAKYHGGEIR-EQNGDSLVHAALVAESAAIGSAEANAFSVLQHVLGAGPHVK-RGSNATSSLYQAVAK 301 (439)
T ss_dssp CC-CCC-----CCCCBCCEEEE-EECCCSEEEEEEEEECCCTTSHHHHHHHHHHHHHCCSCSBT-TCCCTTCHHHHHHHH
T ss_pred CCCCCC-----CCCCCcCCeEE-ecCCccceEEEEEecCCCCCchHHHHHHHHHHHhCCCcccC-CCCCccCHHHHHHHH
Confidence 543211 11222222232 33456789999999998888899999999999998754433 444689999999995
Q ss_pred -ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhccCchHHHHH
Q 016631 241 -NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAED 318 (386)
Q Consensus 241 -~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~ 318 (386)
+|++|+++++...+.+.+.|.+++.++|+++.++++.+.++++++.+ +++++||+++|+.++.++....+++..++..
T Consensus 302 ~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~ 381 (439)
T 1pp9_B 302 GVHQPFDVSAFNASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQGNLSNPDVQAAKNKLKAGYLMSVESSEGFLDE 381 (439)
T ss_dssp HCCSCEEEEEEEEEETTEEEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred hcCCceEEEEeeccccccceEEEEEEeCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 69999999887666778999999999999999999999999999988 9999999999999999999988999999998
Q ss_pred HHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHH
Q 016631 319 IGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNW 376 (386)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~ 376 (386)
++...+..+.+.+.+++.+.|.+||++||++++++++. ++.+++++||..++|.+++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~~~-~~~~~~v~g~~~~~~~~~~ 438 (439)
T 1pp9_B 382 VGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVS-GRKSMAASGNLGHTPFIDE 438 (439)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHTCCHHHHHHHHHHHHH-SCEEEEEEECGGGCCCGGG
T ss_pred HHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHhc-CCceEEEECCcccCCcccc
Confidence 88776666777778899999999999999999999998 7889999999999998764
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=1.8e-50 Score=374.86 Aligned_cols=359 Identities=16% Similarity=0.244 Sum_probs=318.5
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEecccc--HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKD--VNNALDILADILQNSTFDQARITRERDVILREME 78 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~--l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~ 78 (386)
|+|+||++++..++.+.++.+|+++|++|+.+++.|++++++++ ++.+|+++.+++.+|.|++++|+++|+.+.++++
T Consensus 62 ll~~gt~~~~~~~l~~~l~~~g~~~~a~t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~ 141 (434)
T 3gwb_A 62 MLNEGVAGKDVGAIAQGFEGLGADFGNGAYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFE 141 (434)
T ss_dssp HGGGEETTEEHHHHHHHHHTTTCEEEEEECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHhcCcccCCHHHHHHHHHHhCCEEEeeecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999988 9999999999999999999999999999999999
Q ss_pred HhhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCC
Q 016631 79 EVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKL 158 (386)
Q Consensus 79 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~ 158 (386)
+...+|...+.+.+...+|+++|++++.+|+.+.+++++.++|++||+++|.|+|++++|+||++++++.++++++|+.|
T Consensus 142 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l 221 (434)
T 3gwb_A 142 YQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAAL 221 (434)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHS
T ss_pred HhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHh
Q 016631 159 SADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRV 238 (386)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~l 238 (386)
|..+.+..+. .+... .+.......+.+++.+.++|+.++.++++.+++.+++.+||+ ++++++||+.|
T Consensus 222 ~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~vl~~iLg~--------~~~~s~L~~~l 289 (434)
T 3gwb_A 222 PKGPALAKIE---QPAEP-KASIGHIEFPSSQTSLMLAQLGIDRDDPDYAAVSLGNQILGG--------GGFGTRLMSEV 289 (434)
T ss_dssp CCCCCCCCCC---CCCCC-CCEEEEEECCSSEEEEEEEEECCBTTCTTHHHHHHHHHHHHS--------SSSCSHHHHHH
T ss_pred CCCCCCCCCC---CCCCC-CCceEEEeCCCCceeEEecCcCCCCCCcchHHHHHHHHHhCC--------CcccchhHHHH
Confidence 8764332211 11112 222233334458899999999988888999999999999984 12789999999
Q ss_pred cc-ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhccCchHHH
Q 016631 239 GI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVA 316 (386)
Q Consensus 239 re-~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~~~~~~~~ 316 (386)
|+ +|++|+++++...+.+.+.|.+++.++|+++.++++.+.++++++.. +++++||+++|..++.++....+++..++
T Consensus 290 Re~~gl~Y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~~el~~ak~~~~~~~~~~~~~~~~~~ 369 (434)
T 3gwb_A 290 REKRGLTYGVYSGFTPMQARGPFMINLQTRAEMSEGTLKLVQDVFAEYLKNGPTQKELDDAKRELAGSFPLSTASNADIV 369 (434)
T ss_dssp TTTTCCCSCEEEEECCBSSCCEEEEEEEEEGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC---CCCCHHHHH
T ss_pred HhhcCCcceeeeecccCCCceeEEEEEecchhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhhhccCHHHHH
Confidence 97 59999999988877888999999999999999999999999999988 99999999999999999999999999999
Q ss_pred HHHHHHHHhhCCccC-HHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCC
Q 016631 317 EDIGRQLLTYGRRIP-FAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLP 372 (386)
Q Consensus 317 ~~~~~~~~~~~~~~~-~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~ 372 (386)
..++... ..|.+.+ .+++.+.|.+||++||+++++++|.+++.+++++||...-|
T Consensus 370 ~~~~~~~-~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~vvg~~~~~~ 425 (434)
T 3gwb_A 370 GQLGAMG-FYNLPLSYLEDFMRQSQELTVEQVKAAMNKHLNVDKMVIVSAGPTVAQK 425 (434)
T ss_dssp HHHHHHH-HTTCCTTHHHHHHHHHHHCCHHHHHHHHHHHCCGGGCEEEEEECCCCCC
T ss_pred HHHHHHH-HcCCCccHHHHHHHHHHhCCHHHHHHHHHHhcChhhEEEEEEcCccccC
Confidence 9998764 4555555 57899999999999999999999999899999999976533
No 9
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=2e-50 Score=374.20 Aligned_cols=375 Identities=25% Similarity=0.444 Sum_probs=326.2
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCC---CChHHHHHHHHHHHHHH
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNST---FDQARITRERDVILREM 77 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~---~~~~~~~~~k~~~~~~~ 77 (386)
|+|+||++ ..++..|+++|++|+.+++.|++++++++++.+|+++.+++.+|. |++++|+++|+.+.+++
T Consensus 50 ~l~~gt~~-------~~~~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~ 122 (431)
T 3cx5_A 50 IFLSKENS-------AVAAKEGLALSSNISRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQV 122 (431)
T ss_dssp HHTSHHHH-------HHHHHTTCEEEEEECSSCEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHH
T ss_pred HHhcCCCc-------ccHHHcCCeeeeeecCCeEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHH
Confidence 45666543 236778999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHhhCCh-HHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhc
Q 016631 78 EEVEGQT-EEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFT 156 (386)
Q Consensus 78 ~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~ 156 (386)
+...++| ...+.+.+...+|+++|++++++|+.+.|++++.++|++||+++|.|+|++++|+||++++++.++++++|+
T Consensus 123 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~ 202 (431)
T 3cx5_A 123 QDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNL 202 (431)
T ss_dssp HHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCC
T ss_pred HhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhC
Confidence 9888899 999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHH
Q 016631 157 KLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQ 236 (386)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~ 236 (386)
.||.+..+.. . .++...+..+.+...+.+++.+.++|+.++.++++.+++.+++.+|+++.+....+++++++||+
T Consensus 203 ~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iL~~~~~~~~~~~~~~s~L~~ 278 (431)
T 3cx5_A 203 SLQTGTKPVL--K--KKAAFLGSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLD 278 (431)
T ss_dssp CSSCSCCCCC--C--CCCCCCCEEEEEECTTSSSEEEEEEEECCCTTCTTHHHHHHHHHHHCEEETTCTTGGGSSCTHHH
T ss_pred CCCCCCCCCC--C--CCCcccCceEEEcCCCCCceEEEEEeecCCCCCccHHHHHHHHHHcCCCccCCCCccccccHHHH
Confidence 8886543211 1 12222233333334456789999999998888899999999999998532211112246799999
Q ss_pred HhccccceeeeeecccccCCcceeEEEeeeCc-ccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHh--hccCch
Q 016631 237 RVGINEIAESMMAFNTNYKDTGLFGVYAVAKP-DCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLL--HIDGTS 313 (386)
Q Consensus 237 ~lre~gl~y~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~--~~~~~~ 313 (386)
.||++|++|+++++...+.+.+.|.+++.++| +++.++++.+.++++++.++++++||+++|+.++.++.. ..+++.
T Consensus 279 ~lRe~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~l~~l~~~~t~~el~~ak~~~~~~~~~~~~~~~~~ 358 (431)
T 3cx5_A 279 NIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISVTDTEVERAKSLLKLQLGQLYESGNPV 358 (431)
T ss_dssp HHHTTTCCSEEEEEEEECSSCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHSCSCHH
T ss_pred HHHhcCceeeEeEeecccCCCceEEEEEeeCchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCHH
Confidence 99998999999988766677899999999999 999999999999999986699999999999999999999 889999
Q ss_pred HHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhhhhccC
Q 016631 314 PVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWNRY 386 (386)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~~~~~~ 386 (386)
.++..++...+..|.+.+++++.+.|.+||++||++++++++.+++.+++++||..++|+.+++.+.++|++|
T Consensus 359 ~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 431 (431)
T 3cx5_A 359 NDANLLGAEVLIKGSKLSLGEAFKKIDAITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMSMMRW 431 (431)
T ss_dssp HHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTSCCCC
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHcccCCcEEEEEcchhcccCHHHHHhHHHhhcC
Confidence 9999888765556776677889999999999999999999999888999999999999999999999999987
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=8e-49 Score=362.64 Aligned_cols=356 Identities=20% Similarity=0.334 Sum_probs=314.0
Q ss_pred CccccCC----CCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccH--HHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 016631 1 MIFKGTE----KRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDV--NNALDILADILQNSTFDQARITRERDVIL 74 (386)
Q Consensus 1 m~f~Gt~----~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l--~~~l~~l~~~~~~~~~~~~~~~~~k~~~~ 74 (386)
|+|+||+ ++|..++.+.++.+|+++|++|+.+.+.|+++++++++ +.+|+++.+++.+|.|++++|+++|+.+.
T Consensus 53 ~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~ 132 (424)
T 3amj_B 53 LMDAGTGSGKSALDENAIADRLADIGARLGGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAI 132 (424)
T ss_dssp TGGGEECSTTSCEEHHHHHHHHHHTTCEEEEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHH
T ss_pred HHHhccCCCccCCCHHHHHHHHHHhCCEEEeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 7899999 99999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HHHHHhhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHH
Q 016631 75 REMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKL 154 (386)
Q Consensus 75 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~ 154 (386)
++++....+|...+.+.+...+|+++|++++. +.+.+++++.++|++||++||.|+|++++|+||++++++.++++++
T Consensus 133 ~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~ 210 (424)
T 3amj_B 133 AGLREAQTQPGSILGRRFTELAYGKHPYGHVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQL 210 (424)
T ss_dssp HHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHT
T ss_pred HHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHH
Confidence 99999888999999999999999999999887 8899999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHH
Q 016631 155 FTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSEL 234 (386)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L 234 (386)
|+.||....+.. .+ .++ ...+.......+.+++.+.++|+.++.+.++.+++.+++.+||+ +++++||
T Consensus 211 f~~~~~~~~~~~-~~--~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~vl~~iLg~--------~~~~srL 278 (424)
T 3amj_B 211 TADLPAGATLPP-LP--DPA-MPRATVERIANPATQAHIAIGMPTLKRGDPDFFPLVVGNYALGG--------GGFESRL 278 (424)
T ss_dssp TTTSCCCCCCCC-CC--CCC-CCCCEEEEEECSSSEEEEEEEEEEEBTTCTTHHHHHHHHHHHTT--------SGGGSHH
T ss_pred HhcCCCCCCCCC-CC--CCC-CCCCceEEeeCCCCccEEEeeccCCCCCCcchHHHHHHHHHhCC--------CCccchh
Confidence 999986543321 11 111 11222223333458899999999888888999999999999984 1278999
Q ss_pred HHHhcc-ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhccCc
Q 016631 235 AQRVGI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGT 312 (386)
Q Consensus 235 ~~~lre-~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~~~~ 312 (386)
|+.||+ +|++|++++......+.+.|.+++.++|+++.++++.+.++++++.. +++++||+++|+.++.++....+++
T Consensus 279 ~~~lR~~~gl~y~v~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~i~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~ 358 (424)
T 3amj_B 279 MKEIRDKRGLSYGAYSYFSPQKSMGLFQIGFETRAEKADEAVQVANDTLDAFLREGPTDAELQAAKDNLINGFALRLDSN 358 (424)
T ss_dssp HHHHTTTTCCEEEEEEEECCBSSCEEEEEEEEEESTTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSGGGGSSH
T ss_pred HHHHHHhCCeEEEeeeeeccCCCceeEEEEEEeCcccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhhhHhcCCH
Confidence 999996 69999999888777778999999999999999999999999999988 9999999999999999999988999
Q ss_pred hHHHHHHHHHHHhhCCccC-HHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCC
Q 016631 313 SPVAEDIGRQLLTYGRRIP-FAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGL 371 (386)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~ 371 (386)
..++..+.... ..|.+.+ .+++.+.|.+||++||++++++++.+++.+++++||...+
T Consensus 359 ~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~ 417 (424)
T 3amj_B 359 AKILGQVAVIG-YYGLPLDYLDHYTERVQAVTVEQVREAFARHVKRENLITVVVGGKASL 417 (424)
T ss_dssp HHHHHHHHHHH-HTTCCTTTTTSHHHHHHTCCHHHHHHHHHHHCCGGGCEEEEEECC---
T ss_pred HHHHHHHHHHH-HcCCChhHHHHHHHHHHcCCHHHHHHHHHHhcCccceEEEEECChhhh
Confidence 99999887644 4555544 5788999999999999999999999989999999997543
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=6.7e-46 Score=343.24 Aligned_cols=353 Identities=16% Similarity=0.211 Sum_probs=304.4
Q ss_pred CccccCCCC-ChHHHHHHHHhc-CCeeeeeecceE----EEEEEEeccc-------cHHHHHHHHHHhhcCCC-----CC
Q 016631 1 MIFKGTEKR-TARDLEEEIENM-GGHLNAYTSREQ----TTYYAKVLDK-------DVNNALDILADILQNST-----FD 62 (386)
Q Consensus 1 m~f~Gt~~~-~~~~l~~~l~~~-g~~~~~~t~~~~----~~~~~~~~~~-------~l~~~l~~l~~~~~~~~-----~~ 62 (386)
|+|+||+++ +..++.+.++.+ |+++|++|+.+. +.|+++++++ +++.+|+++.+++.+|. |+
T Consensus 49 ~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~ 128 (425)
T 3d3y_A 49 LMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFE 128 (425)
T ss_dssp HHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEETTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEEC
T ss_pred HHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeecCceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCC
Confidence 578999999 788999999998 999999999988 6999999987 69999999999999999 99
Q ss_pred hHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhc-CCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCC
Q 016631 63 QARITRERDVILREMEEVEGQTEEVIFDHLHATAF-QYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 141 (386)
Q Consensus 63 ~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~ 141 (386)
+++|+++|+.+.++++....+|...+.+.+...+| +++|++++.+|+.+.|++++.++|++||+++|.|+|++++|+||
T Consensus 129 ~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~ 208 (425)
T 3d3y_A 129 AETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGD 208 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 99999999999999999888999999999999999 88999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccC-CCCCchhhHHHHHHHHcCCC
Q 016631 142 VKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGA-SWTDPDSIALMVMQAMLGSW 220 (386)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~ll~~iL~~~ 220 (386)
++++++.+++ ++|+ |+....+..+.+. ..+...........++.+++++.++|+.+ +++.++.+++.|++.+||+
T Consensus 209 ~~~~~~~~~~-~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vl~~iLg~- 284 (425)
T 3d3y_A 209 VNEAELVPLF-KQLP-FTPREEGKAAIFY-NQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGG- 284 (425)
T ss_dssp CCHHHHHHHH-HTSC-CCCCCCCCCCSCC-CCCCCSSCEEEEEEEECSSEEEEEEEECCCCTTSTTHHHHHHHHHHHTT-
T ss_pred CCHHHHHHHH-HhCC-CCccccccccccc-cccCCCcceeEEecCCccccEEEEEeecCCCCCCchHHHHHHHHHHhCC-
Confidence 9999999999 9999 9865432211110 11111112233344567889999999986 6888999999999999984
Q ss_pred CCCCCCCCCcccHHHHHhcc-ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-CCCHHHHHHHH
Q 016631 221 NKNSVGGKHMGSELAQRVGI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRAR 298 (386)
Q Consensus 221 ~~~~~~~~~~~s~L~~~lre-~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k 298 (386)
+++++||+.||+ +|++|++++.... ..|.|.+++.++|+++.++++.+.++++++.. +++++||+++|
T Consensus 285 --------~~~s~L~~~lRe~~glaY~v~~~~~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~el~~ak 354 (425)
T 3d3y_A 285 --------FPHSKLFMNVREKEHLAYYASSSIDT--FRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTK 354 (425)
T ss_dssp --------STTSHHHHHTTTTSCCCSEEEEEEET--TTTEEEEEEEECGGGHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred --------ChhhHHHHHHHHhcCeEEEEeccccc--cCceEEEEEecCHhhHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 568999999997 5999999887653 37889999999999999999999999999988 99999999999
Q ss_pred HHHHHhhHhhccCchHHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 299 NQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
..++.++....+++..++..++...+..|.+.+.+++.+.|.+||++||++++++++.. ..++++|+++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~edv~~~a~~~~~~--~~~~v~g~~~ 423 (425)
T 3d3y_A 355 AMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLELQ--AIFFLEGETE 423 (425)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHSTTSCCCHHHHHHHHHHCCHHHHHHHHHHCEEE--EEEEEEEECC
T ss_pred HHHHHhHHhcccCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHhCCHHHHHHHHHhccCc--eEEEEeCCCC
Confidence 99999999999999999998887665436666778999999999999999999998743 4556666543
No 12
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=3.2e-44 Score=362.76 Aligned_cols=359 Identities=16% Similarity=0.154 Sum_probs=304.5
Q ss_pred CccccCCCCC-hHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 016631 1 MIFKGTEKRT-ARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (386)
Q Consensus 1 m~f~Gt~~~~-~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~ 79 (386)
|+|+||++|| ..++.++++.+|+++|++|+.++|+|++++++++++.+|+++.+++.+|.|+++++++||+++.+|++.
T Consensus 70 mlf~Gt~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~ 149 (939)
T 1q2l_A 70 MSLMGSKKYPQADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTM 149 (939)
T ss_dssp HTTSCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHH
T ss_pred HHccCCCCCCCcchHHHHHHHcCCcceEEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence 7999999998 479999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcc----cCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHh
Q 016631 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKT----ITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLF 155 (386)
Q Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~----i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~ 155 (386)
..++|..++.+.+...+|++|||+++++|+.+.|++ ++.++|++||++||.|+||+++|+||+|++++.++++++|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f 229 (939)
T 1q2l_A 150 ARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTF 229 (939)
T ss_dssp HTTSHHHHHHHHHHHSSCTTSGGGSCCSCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTG
T ss_pred ccCCHHHHHHHHHHHhcCCCCCCccCCCCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCCcc-CCCceEEecCCCCceEEEEEeccCCCCCc-hhhHHHHHHHHcCCCCCCCCCCCCcccH
Q 016631 156 TKLSADPTTASQLVANEPAIF-TGSEVRIIDDDIPLAQFAVAFAGASWTDP-DSIALMVMQAMLGSWNKNSVGGKHMGSE 233 (386)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~ll~~iL~~~~~~~~~~~~~~s~ 233 (386)
+.|+++..+...... ++... .........+..+++.+.++|+.|...+. +..++.+++.+||+ +..|+
T Consensus 230 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~l~~lLg~---------~~~s~ 299 (939)
T 1q2l_A 230 GRVPNKESKKPEITV-PVVTDAQKGIIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGN---------RSPGT 299 (939)
T ss_dssp GGSCCCCCCCCCCCS-CSCCGGGSSEEEEECCSSCCCEEEEEEEEECCGGGGGGCHHHHHHHHHHC---------CCTTS
T ss_pred hhhccCCCCCCCCCC-CCCCHHHcCEEEEEEeCCCCcEEEEEEEcCChHHhhhhCHHHHHHHHhcC---------CCCCc
Confidence 999876543221110 11111 11222233456678899999998876544 66788999999985 35789
Q ss_pred HHHHhccccceeeeeecc--cccCCcceeEEEeeeCc---ccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHh
Q 016631 234 LAQRVGINEIAESMMAFN--TNYKDTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLL 307 (386)
Q Consensus 234 L~~~lre~gl~y~~~~~~--~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~ 307 (386)
|++.||++|++|+++++. ....+.+.|.+++.+.+ +++.++++.+.++|+++++ |++++|++++|+.+..++..
T Consensus 300 L~~~L~~~gl~~~~~a~~~~~~~~~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~~g~~~~el~~~k~~~~~~~~~ 379 (939)
T 1q2l_A 300 LSDWLQKQGLVEGISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDELANVLDIDFRY 379 (939)
T ss_dssp HHHHHHHTTCEEEEEEEEESSTTSSEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCchheeeccccccCCCceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccc
Confidence 999999999999998864 34466799999999887 5999999999999999988 99999999999999999987
Q ss_pred hc-cCchHHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCC
Q 016631 308 HI-DGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGL 371 (386)
Q Consensus 308 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~ 371 (386)
.. +++...+..++..+. ...+.........+.++|+++|+++++. +.+++++++++||....
T Consensus 380 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~i~~vt~~~i~~~~~~-l~~~~~~~~~~~p~~~~ 442 (939)
T 1q2l_A 380 PSITRDMDYVEWLADTMI-RVPVEHTLDAVNIADRYDAKAVKERLAM-MTPQNARIWYISPKEPH 442 (939)
T ss_dssp CCCCCSHHHHHHHHHHHT-TSCGGGTTTTTTCCCCCCHHHHHHHHHH-CSGGGCEEEEECTTCCC
T ss_pred cCCCChHHHHHHHHHHhh-cCCHHHHhcCchhhhccCHHHHHHHHHh-cCHHHcEEEEEcCCCCC
Confidence 65 677778888876643 3322223344567999999999999987 67788899999997653
No 13
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=6.2e-43 Score=327.39 Aligned_cols=356 Identities=14% Similarity=0.105 Sum_probs=282.6
Q ss_pred CccccCCCCChHHHHHHHH----hcCCeeeeeecceEEEEEEEecc---ccHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 016631 1 MIFKGTEKRTARDLEEEIE----NMGGHLNAYTSREQTTYYAKVLD---KDVNNALDILADILQNSTFDQARITRERDVI 73 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~----~~g~~~~~~t~~~~~~~~~~~~~---~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~ 73 (386)
|+|+||+++|..++.+.++ ..|+.+|++|+.++|.|++++++ ++++.+|++|.+++.+|.|++++|+++|..+
T Consensus 77 mlf~GT~~~~~~~~~~~~~~~~~~~G~~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~ 156 (492)
T 3go9_A 77 LALMSSASFTPAQLQSLWQQGIDNERPLPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTA 156 (492)
T ss_dssp HHHHCCTTCCHHHHHHHHHTCSCSSSCCCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCS
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHhcCCCcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 7899999999999998765 47999999999999999999998 6799999999999999999999999999987
Q ss_pred HHHHHHhhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHH
Q 016631 74 LREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKK 153 (386)
Q Consensus 74 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~ 153 (386)
.++++....+|....+ ...+++.++++++..+ +.+++++.++|++||++||.|+|++++|+||+|++++.+++++
T Consensus 157 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~ 231 (492)
T 3go9_A 157 TDPIATFPQNIQEPWW---RYRLKGSSLIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISK 231 (492)
T ss_dssp SCCEEESSSCTTCHHH---HHHTTTSTTTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHH
T ss_pred HHHHHhcccchhhHHH---HHHhccCCcccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHH
Confidence 7777666566654333 3456677677766543 6789999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHH------HHHHHHcCCCCCCCCCC
Q 016631 154 LFTKLSADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIAL------MVMQAMLGSWNKNSVGG 227 (386)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------~ll~~iL~~~~~~~~~~ 227 (386)
+|+.|+.+.....+.+ ..++.....+.+...+.++++|.++|+.+....++..++ .+++.+|+
T Consensus 232 ~f~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~q~~v~l~~~~~~~~~~d~~~l~~~~~~~v~~~iLg--------- 300 (492)
T 3go9_A 232 AFSELKGKRTAPAAVA--TLAPLPPEPVSLMNEQAAQDTLSLMWDTPWHPIQDSMALSRYWRSDLAREALF--------- 300 (492)
T ss_dssp HHTTCCCCCSSCCCCC--CCCCCCSSCEEEEESSCSSEEEEEEEEEECCCCCSHHHHHHHHHHHHHHHHHH---------
T ss_pred HhhcCCCCCCCCCCCC--CCCCCCCCceEEEcCCCCCcEEEEEecCCCCCcccHHHHHHHHHHHHHHHHHH---------
Confidence 9999987653222111 122222333445556778999999999987776665444 89999996
Q ss_pred CCcccHHHHHhcc---ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHH
Q 016631 228 KHMGSELAQRVGI---NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKS 303 (386)
Q Consensus 228 ~~~~s~L~~~lre---~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~ 303 (386)
++|+..+|+ +|++|+++++.....+.+.| ++.+++++..++++.+.++++++++ |+|++||+++|+.+++
T Consensus 301 ----~~L~~~lre~~~~gl~y~~~s~~~~~~~~~~~--~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~ 374 (492)
T 3go9_A 301 ----WHIKQVLEKNNQKNLKLGFDCRVQYQRAQCAI--HLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKND 374 (492)
T ss_dssp ----HHHHHHHHHSCCTTCEEEEEEEEETTEEEEEE--EEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHhhccccccccCchhhhhhcceEE--EEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 799999986 49999999877655544544 4556889999999999999999988 9999999999999999
Q ss_pred hhHhhcc-----CchHHHHHHHHHHHhhCCccCHH----HHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCC-
Q 016631 304 SLLLHID-----GTSPVAEDIGRQLLTYGRRIPFA----ELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPD- 373 (386)
Q Consensus 304 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~- 373 (386)
++....+ ++..+++.+.+..........++ .+.+.|.+||.+||++++++++.++ ..++++||..++..
T Consensus 375 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~-~~~vvvg~~~~~e~~ 453 (492)
T 3go9_A 375 QLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQD-TTLVLMQPKGEPEVN 453 (492)
T ss_dssp HHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSC-CEEEEEEETTSCCCC
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCC-CeEEEEcCCCCCCcc
Confidence 9987644 46677777776554433222332 3447799999999999999999965 67888888777664
Q ss_pred hHHHHH
Q 016631 374 YNWFRR 379 (386)
Q Consensus 374 ~~~~~~ 379 (386)
.+++..
T Consensus 454 ~~~l~~ 459 (492)
T 3go9_A 454 VKALQE 459 (492)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 14
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.2e-42 Score=352.71 Aligned_cols=359 Identities=14% Similarity=0.154 Sum_probs=294.0
Q ss_pred CccccCCCCChHH-HHHHHHh-cCCeeeeeecceEEEEEEEec-cccHHHHHHHHHHhhcCCCC--ChHHHHHH------
Q 016631 1 MIFKGTEKRTARD-LEEEIEN-MGGHLNAYTSREQTTYYAKVL-DKDVNNALDILADILQNSTF--DQARITRE------ 69 (386)
Q Consensus 1 m~f~Gt~~~~~~~-l~~~l~~-~g~~~~~~t~~~~~~~~~~~~-~~~l~~~l~~l~~~~~~~~~--~~~~~~~~------ 69 (386)
|+|+||++||..+ +.+.+.. .|+.+|++|+.++|+|.+.++ +++++.+|+++.+++.+|.| +++.|++|
T Consensus 82 m~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~ 161 (995)
T 2fge_A 82 SVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYEL 161 (995)
T ss_dssp HTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEEC
T ss_pred HHhCCCCCCCCccHHHHHHHhccCCCceeeECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhc
Confidence 7999999999777 5555554 699999999999999999876 56899999999999999999 99999999
Q ss_pred ---------HHHHHHHHHHhhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeC
Q 016631 70 ---------RDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASG 140 (386)
Q Consensus 70 ---------k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G 140 (386)
|+++.+|++...++|..++.+.+.+.+|++|||+++++|+.++|++++.++|++||++||.|+||+++|+|
T Consensus 162 ~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~G 241 (995)
T 2fge_A 162 NDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYG 241 (995)
T ss_dssp SCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEE
T ss_pred ccccccccccchHHHHHHhhhCCHHHHHHHHHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEc
Confidence 89999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCC--CCCCcccccccCCCCccCCCc---eEE-e---cCCCCceEEEEEeccCCCC--CchhhH
Q 016631 141 AVKHEEVVEQVKKLFTKLS--ADPTTASQLVANEPAIFTGSE---VRI-I---DDDIPLAQFAVAFAGASWT--DPDSIA 209 (386)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~-~---~~~~~~~~v~~~~~~~~~~--~~~~~~ 209 (386)
|+|++++.++++++|+.|+ ....+.. .+ ..+.+.... ... . .++.+++.+.++|+.+... .++..+
T Consensus 242 d~d~~~~~~~i~~~f~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a 318 (995)
T 2fge_A 242 DDDPVHRLRVLSEYLDMFEASPSPNSSK-IK--FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSEKPLDLQTQLA 318 (995)
T ss_dssp SSCHHHHHHHHHHHHTTCCCCSHHHHSC-CC--CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCSSCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCccccCCCcc-cC--CCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCCCcCCHHHHHH
Confidence 9999999999999999998 4221111 00 112222221 111 1 3345789999999988766 578999
Q ss_pred HHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeec-ccccCCcceeEEE-eeeCcccHHHHHHHHHHHHHHhhc
Q 016631 210 LMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAF-NTNYKDTGLFGVY-AVAKPDCLDDLAYAIMYETTKLAY 287 (386)
Q Consensus 210 ~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~-~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~i~~l~~ 287 (386)
+.+++.+|++ +.+|||++.||++|++|+++++ +......+.|.+. ..++++++.++++.+.++|+++.+
T Consensus 319 ~~vl~~~Lg~---------~~~S~L~~~l~e~gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~ 389 (995)
T 2fge_A 319 LGFLDHLMLG---------TPASPLRKILLESGLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAE 389 (995)
T ss_dssp HHHHHHHHHS---------STTSHHHHHHHHTTSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcC---------CCCCHHHHHHHhcCCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999984 4689999999998999998865 5545557899986 468899999999999999999988
Q ss_pred -CCCHHHHHHHHHHHHHhhHhhc--cCch--HHHHHHHHHHHhhCCccCHHHHHHHHhcCCH----H----HHHHHHHHh
Q 016631 288 -RVSEADVTRARNQLKSSLLLHI--DGTS--PVAEDIGRQLLTYGRRIPFAELFARIDSVDA----S----TVKRVANRF 354 (386)
Q Consensus 288 -~~~~~el~~~k~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~----~----dv~~~~~~~ 354 (386)
|+++++|+++|+.+...+.... +++. .++..++..++..+.+....+..+.+..++. + +|++++++|
T Consensus 390 ~g~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 469 (995)
T 2fge_A 390 EGFDNDAVEASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKL 469 (995)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9999999999999998887543 2344 4556666665555565554444466665555 8 899999999
Q ss_pred hccC-CcEEEEecCCCCC
Q 016631 355 IYDR-DIAIAAMGPIQGL 371 (386)
Q Consensus 355 l~~~-~~~~~i~gp~~~~ 371 (386)
|.++ +.++++++|....
T Consensus 470 l~~~~~~~~~~~~p~~~~ 487 (995)
T 2fge_A 470 ILNNSHRVTIEMQPDPEK 487 (995)
T ss_dssp TTTCCCEEEEEEEEETTH
T ss_pred hcCCCceEEEEEEcCccH
Confidence 9764 5678888887643
No 15
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=8.6e-42 Score=342.72 Aligned_cols=361 Identities=13% Similarity=0.163 Sum_probs=292.2
Q ss_pred CccccCCCCChHHHHHHHHh--cCCeeeeeecceEEEEEEEecc-ccHHHHHHHHHHhhcCCCCChHH--HHHH------
Q 016631 1 MIFKGTEKRTARDLEEEIEN--MGGHLNAYTSREQTTYYAKVLD-KDVNNALDILADILQNSTFDQAR--ITRE------ 69 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~--~g~~~~~~t~~~~~~~~~~~~~-~~l~~~l~~l~~~~~~~~~~~~~--~~~~------ 69 (386)
|+|+||++||..++...+.. .|+.+|++|+.++|+|.+++++ ++++.+|+++.+++.+|.|++++ |.++
T Consensus 134 mlf~GS~k~p~~e~~~~l~~~slG~~lNA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~ 213 (1193)
T 3s5m_A 134 SVLSGSKNYNYKNSIGLLEKGTLHTHLNAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEV 213 (1193)
T ss_dssp HTTSCBTTBCCTTHHHHHHHSCCEEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEE
T ss_pred HHhCCCCCCChhhHHHHHHHhccCceEEeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhh
Confidence 78999999999999888888 8999999999999999999887 89999999999999999999887 7776
Q ss_pred -----------------------HHHHHHHHHHhhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHH
Q 016631 70 -----------------------RDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIH 126 (386)
Q Consensus 70 -----------------------k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~ 126 (386)
|+++.+|++...++|...+.+.+.+.+|++|||+++.+|++++|.+++.++|++||+
T Consensus 214 e~~~~~Er~~~~~~~~~~~~l~~k~vV~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~ 293 (1193)
T 3s5m_A 214 EKLKEDEKGKAEIPQMKDYKVSFNGIVYNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYY 293 (1193)
T ss_dssp EECCTTTTTCTTSCEETTEEEEEECHHHHHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHH
T ss_pred hccchhhhccccccccccchhhHHHHHHHHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCCCCcccccccC-CCCccCCC-ceEEe---cCCCCceEEEEEeccCC
Q 016631 127 THYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVAN-EPAIFTGS-EVRII---DDDIPLAQFAVAFAGAS 201 (386)
Q Consensus 127 ~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~---~~~~~~~~v~~~~~~~~ 201 (386)
+||.|+|++++++||+|++++.++++++|+.|+.++.+..+.... ..++..+. .+... .++.+++++.++|+.++
T Consensus 294 ~~Y~P~Na~l~v~Gdid~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~ 373 (1193)
T 3s5m_A 294 KNYNPKKVKVFFFSKNNPTELLNFVDQYLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNP 373 (1193)
T ss_dssp HHSCTTTCEEEEEESSCTHHHHHHHHHHHTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSC
T ss_pred HhcCccceEEEEEecCCHHHHHHHHHHHhccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecC
Confidence 999999999999999999999999999999998654321110000 11222222 22221 13567889999999875
Q ss_pred C-----C-----------------------------CchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeee
Q 016631 202 W-----T-----------------------------DPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESM 247 (386)
Q Consensus 202 ~-----~-----------------------------~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~ 247 (386)
. + .++.+++.|++.+|++ +.+|||++.||++|++|++
T Consensus 374 ~~~~~~d~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~d~~al~vL~~iLgg---------g~sSrL~~~L~e~gLa~~v 444 (1193)
T 3s5m_A 374 KVDKTNNHNNNHSNNQSSENNGYSNGSHSSDLSLENPTDYFVLLIINNLLIH---------TPESVLYKALTDCGLGNNV 444 (1193)
T ss_dssp BCC----------------------CCCCSTTCCCSHHHHHHHHHHHHHHHS---------STTSHHHHHHHHHCSCSEE
T ss_pred cccccccccccccccccccccccccccccccccccCccHHHHHHHHHHHHCC---------CCCCHHHHHHHhcCCeeee
Confidence 2 2 3688999999999984 5799999999999999999
Q ss_pred e-ecccccCCcceeEEEe-eeCccc--------H-HHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhh-ccCchH
Q 016631 248 M-AFNTNYKDTGLFGVYA-VAKPDC--------L-DDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLH-IDGTSP 314 (386)
Q Consensus 248 ~-~~~~~~~~~~~~~i~~-~~~~~~--------~-~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~-~~~~~~ 314 (386)
+ +++......+.|.+.+ .+++++ + +++.+.|.++|+++.+ |+++++++++++++...+... ..++..
T Consensus 445 ~~~~~~~~~~~~~f~i~~~g~~~~~~~~~~~~~~~~~~~~~I~~~L~~l~~~gi~~~ele~a~~~le~~~re~~~~~~~g 524 (1193)
T 3s5m_A 445 IDRGLNDSLVQYIFSIGLKGIKRNNEKIKNFDKVHYEVEDVIMNALKKVVKEGFNKSAVEASINNIEFILKEANLKTSKS 524 (1193)
T ss_dssp EEEEEECSSSSCEEEEEEEEECTTCTTCSCGGGHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHTTSTTHH
T ss_pred cccccccccCCcEEEEEEecCChhhccccchhhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCCcH
Confidence 7 5666666678888887 455543 6 7999999999999998 999999999999999988774 334443
Q ss_pred H--HHHHHHHHHhhCCccC---HHHHHHHHhcCC---HHHHHHHHHHhhccCC-cEEEEecCCCC
Q 016631 315 V--AEDIGRQLLTYGRRIP---FAELFARIDSVD---ASTVKRVANRFIYDRD-IAIAAMGPIQG 370 (386)
Q Consensus 315 ~--~~~~~~~~~~~~~~~~---~~~~~~~i~~vt---~~dv~~~~~~~l~~~~-~~~~i~gp~~~ 370 (386)
. +..++..++..|+|.. ++...+.++..+ +.++.+++++||..++ .+++++-|...
T Consensus 525 l~~~~~~~~~w~~~~dp~~~l~~~~~l~~l~~~~~~~~~~~~~li~~yll~n~~~~~~~~~P~~~ 589 (1193)
T 3s5m_A 525 IDFVFEMTSKLNYNRDPLLIFEFEKYLNIVKNKIKNEPMYLEKFVEKHFINNAHRSVILLEGDEN 589 (1193)
T ss_dssp HHHHHHHHHHHHTTCCTTTTTSHHHHHHHHHHHHHHSTTHHHHHHHHHTTTCCCEEEEEEEEESS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHhccCCceEEEEEEcCCC
Confidence 3 3445555666787776 345555555543 4599999999986554 46667777654
No 16
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=1.7e-40 Score=337.23 Aligned_cols=355 Identities=16% Similarity=0.185 Sum_probs=293.3
Q ss_pred CccccCCCCCh-HHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 016631 1 MIFKGTEKRTA-RDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEE 79 (386)
Q Consensus 1 m~f~Gt~~~~~-~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~ 79 (386)
|+|+||++||. .++.++++.+|+.+|++|+.++|+|.+++++++++.+|+++.+++.+|.|++++|++|+.+|.+|++.
T Consensus 84 mlf~GT~~~p~~~~~~~~l~~~Gg~~NA~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~ 163 (990)
T 3cww_A 84 MLFLGTKKYPKENEYSQFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEK 163 (990)
T ss_dssp HGGGCBSSSCSTTHHHHHHHTTTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCcchHHHHHHHcCCceeEEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHh
Confidence 78999999996 79999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhccc-------CHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTI-------TKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i-------~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
...+|...+...+...++++|||+++.+|+.+.|.++ +.++|++||++||.|+||+++|+||+|++++.++++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~py~~~~~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~ 243 (990)
T 3cww_A 164 NVMNDAWRLFQLEKATGNPKHPFSKFGTGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVV 243 (990)
T ss_dssp HHTCHHHHHHHHHHHTSCTTSGGGCCCSCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHhcCCCCCcccCCCCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHH
Confidence 8888998888888899999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCcccccccCCCCccC---CCceEEecCCCCceEEEEEeccCCCC-CchhhHHHHHHHHcCCCCCCCCCCC
Q 016631 153 KLFTKLSADPTTASQLVANEPAIFT---GSEVRIIDDDIPLAQFAVAFAGASWT-DPDSIALMVMQAMLGSWNKNSVGGK 228 (386)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~ll~~iL~~~~~~~~~~~ 228 (386)
++|+.|+.+..+.... ..+++. .+......+..+++.+.++|+.+... ..+..++.+++.+||+.
T Consensus 244 ~~f~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~lLg~~-------- 312 (990)
T 3cww_A 244 KLFSEVENKNVPLPEF---PEHPFQEEHLKQLYKIVPIKDIRNLYVTFPIPDLQKYYKSNPGHYLGHLIGHE-------- 312 (990)
T ss_dssp HHHTTSCCCCCCCCCC---CSCSSCGGGSSEEEEECCSSSCCEEEEEEEECCCGGGTTTCHHHHHHHHHTCC--------
T ss_pred HHhcCCccCCCCCCCC---CCCCCChHHcCeEEEEEECCCCcEEEEEEEcCChhhhhhhCHHHHHHHHhcCC--------
Confidence 9999998764432211 111111 11222334445678999999988765 35678899999999841
Q ss_pred CcccHHHHHhccccceeeeeecccc-cCCcceeEEEeeeCc---ccHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHH
Q 016631 229 HMGSELAQRVGINEIAESMMAFNTN-YKDTGLFGVYAVAKP---DCLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKS 303 (386)
Q Consensus 229 ~~~s~L~~~lre~gl~y~~~~~~~~-~~~~~~~~i~~~~~~---~~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~ 303 (386)
+.++ |+..||++|++|+++++... ..+.+.|.+++.+.+ +++.++++.+.++|+++++ |++++++++++.....
T Consensus 313 ~~~s-l~~~Lr~~g~~~~~~a~~~~~~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~~g~~~~~l~~~~~~~~~ 391 (990)
T 3cww_A 313 GPGS-LLSELKSKGWVNTLVGGQKAGARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRAEGPQEWVFQELKDLNAV 391 (990)
T ss_dssp STTC-HHHHHHHTTSCSCEEEEEEEEETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCc-HHHHHHHCCCcceeeeccccCCCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 2234 67799999999999886653 345689999998765 4999999999999999988 9999999999988887
Q ss_pred hhHhh-ccCchHHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 304 SLLLH-IDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 304 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
.+... .+++..++..+...+ ....+.......+.+.++|+++|+++++. +.+++.+++++||..
T Consensus 392 ~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~i~~~t~~~i~~~~~~-l~~~~~~~~~~~p~~ 456 (990)
T 3cww_A 392 AFRFKDKERPRGYTSKIAGIL-HYYPLEEVLTAEYLLEEFRPDLIEMVLDK-LRPENVRVAIVSKSF 456 (990)
T ss_dssp HHHTCCCCCHHHHHHHHHHHT-TTSCGGGTTTTTTCCCCCCHHHHHHHHTT-CSGGGCEEEEECGGG
T ss_pred hcccCCcCCHHHHHHHHHHHH-hhCCHHHHhccchhhhcCCHHHHHHHHHh-cCHhHEEEEEEcCCC
Confidence 77654 356777777775543 23222223344577999999999999996 556677888999854
No 17
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=2.3e-38 Score=285.23 Aligned_cols=311 Identities=21% Similarity=0.281 Sum_probs=253.1
Q ss_pred CccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHH-HHHHHHHHHHHH
Q 016631 1 MIFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARIT-RERDVILREMEE 79 (386)
Q Consensus 1 m~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~-~~k~~~~~~~~~ 79 (386)
|+|+||+++|..++.+.++..|+++|++|+.+++.|++++++++++.+|+++.+++.+|.|++++|+ ++|+.+.++++.
T Consensus 38 ~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~ 117 (352)
T 3cx5_B 38 FNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAV 117 (352)
T ss_dssp HTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHH
T ss_pred HhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEechhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999998 999999999999
Q ss_pred hhCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHH-HHHhcCC
Q 016631 80 VEGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQV-KKLFTKL 158 (386)
Q Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~-~~~~~~~ 158 (386)
..++|...+.+.+...+|+ +|++++.. .+.+++++.++|++||++||.|+|++++|+| +|++++.+++ +++|+.|
T Consensus 118 ~~~~p~~~~~~~~~~~~~~-~p~~~~~~--~~~l~~it~~~l~~f~~~~y~~~n~~l~v~G-~~~~~~~~~i~~~~f~~~ 193 (352)
T 3cx5_B 118 AEQCPVKSAEDQLYAITFR-KGLGNPLL--YDGVERVSLQDIKDFADKVYTKENLEVSGEN-VVEADLKRFVDESLLSTL 193 (352)
T ss_dssp HHTCHHHHHHHHHHHHHHT-TTTTSCSS--CCSSSCCCHHHHHHHHHHHCCGGGEEEEEES-SCHHHHHHHHHHSTTTTS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCCCCccc--hhhhccCCHHHHHHHHHHhCCcCcEEEEEeC-CCHHHHHHHHHHHhhccC
Confidence 8899999999999999997 89998874 6899999999999999999999999999999 9999999999 8999999
Q ss_pred CCCCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHh
Q 016631 159 SADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRV 238 (386)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~l 238 (386)
|....+... . ..+...+....+.. ..++.+.+++ +.++++.+++.|++.+|| + .|
T Consensus 194 ~~~~~~~~~-~--~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~l~vl~~iLg-------------~----~l 248 (352)
T 3cx5_B 194 PAGKSLVSK-S--EPKFFLGEENRVRF--IGDSVAAIGI---PVNKASLAQYEVLANYLT-------------S----AL 248 (352)
T ss_dssp CCCCCCCCC-S--CCCCCCSCEEEEEC--SSSEEEEEEE---EECTTTHHHHHHHHHHHH-------------S----TT
T ss_pred CCCCCCCCC-C--CCCCccCCeEEEec--CCCceEEEec---CCCChhHHHHHHHHHHhC-------------c----ch
Confidence 865433211 1 11122232333322 2555555543 346678999999999997 2 57
Q ss_pred cc-ccceeeeeecccccCCcceeEEEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHH
Q 016631 239 GI-NEIAESMMAFNTNYKDTGLFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAE 317 (386)
Q Consensus 239 re-~gl~y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~ 317 (386)
|+ .|++ ++++...+.+.|.|.+++.++ +.+++.+.+.+.++. +++++||+++|+.++.++....+++
T Consensus 249 re~~gl~--~~~~~~~~~~~g~~~i~~~~~--~~~~~~~~i~~~l~~---~~t~~el~~ak~~~~~~~~~~~~~~----- 316 (352)
T 3cx5_B 249 SELSGLI--SSAKLDKFTDGGLFTLFVRDQ--DSAVVSSNIKKIVAD---LKKGKDLSPAINYTKLKNAVQNESV----- 316 (352)
T ss_dssp STTGGGC--SEEEEEEETTEEEEEEEEEES--CHHHHHHHHHHHHHH---HHSCEECGGGHHHHHHHHHHHCCST-----
T ss_pred hcccCce--EEEeecCcCcceeEEEEEEeC--CHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHhhhhcc-----
Confidence 85 5776 455444456778999999986 455666666655543 6999999999999999999887762
Q ss_pred HHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHH
Q 016631 318 DIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNW 376 (386)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~ 376 (386)
|.+.++ .|++||. ++ | ++++++++||.+++|.+++
T Consensus 317 ---------~~~~~~-----~i~~vt~-------~~-~--~~~~~~~~G~~~~~~~~~~ 351 (352)
T 3cx5_B 317 ---------SSPIEL-----NFDAVKD-------FK-L--GKFNYVAVGDVSNLPYLDE 351 (352)
T ss_dssp ---------TCCCCS-----CGGGCCE-------EC-C--CSCEEEEEESGGGSCCGGG
T ss_pred ---------CCccce-----eeeeeeH-------hh-c--CCceEEEEccccccCcccc
Confidence 333344 5889992 23 4 7799999999999998764
No 18
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=7.5e-33 Score=281.01 Aligned_cols=346 Identities=12% Similarity=0.002 Sum_probs=271.1
Q ss_pred ccCCCCChHHHHHHHHhcCCeeee-----eecc-----eEEEEEEEeccccHHHHHHHHHHhhcCCCCChH-HHHHHHHH
Q 016631 4 KGTEKRTARDLEEEIENMGGHLNA-----YTSR-----EQTTYYAKVLDKDVNNALDILADILQNSTFDQA-RITRERDV 72 (386)
Q Consensus 4 ~Gt~~~~~~~l~~~l~~~g~~~~~-----~t~~-----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~-~~~~~k~~ 72 (386)
.||+++++.++.+.++...+.+++ +++. +.+.+++++++++++.+|+++.+++.+|.|+++ +|+++++.
T Consensus 604 ~Gt~~~s~~el~~~l~~~~ggl~~~~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~ 683 (995)
T 2fge_A 604 MGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQ 683 (995)
T ss_dssp SCCSSSCHHHHHHHHHHHSSEEEEEEEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHhcCceEeeccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 599999999999999966555555 5544 899999999999999999999999999999998 99999999
Q ss_pred HHHHHHHhh-CChHHHHHHHHHHhhcCCCCCCCCCCC-----Cc--------hhhcccCHHHHHHHHHhhCCCCCeEEEE
Q 016631 73 ILREMEEVE-GQTEEVIFDHLHATAFQYTPLGRTILG-----PA--------QNIKTITKEHLQNYIHTHYTAPRMVIAA 138 (386)
Q Consensus 73 ~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~g-----~~--------~~l~~i~~~~l~~~~~~~~~~~~~~l~i 138 (386)
++.++++.. +++...+...+...+.+.++++....| .. +.++.+ .++|++||+++|.+++++++|
T Consensus 684 ~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v 762 (995)
T 2fge_A 684 SRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNM 762 (995)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHTTCHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEE
T ss_pred HHHHHHHhhhccHHHHHHHHHHHhCChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEE
Confidence 999999975 567777777777665545444322111 11 557889 999999999999999999999
Q ss_pred eCCCCH-HHHHHHHHHHhcCC-CCCCCcccccccCCCCccCCCceEEecCCCCceEEEEEeccCCCCCchhhHHHHHHHH
Q 016631 139 SGAVKH-EEVVEQVKKLFTKL-SADPTTASQLVANEPAIFTGSEVRIIDDDIPLAQFAVAFAGASWTDPDSIALMVMQAM 216 (386)
Q Consensus 139 ~G~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~i 216 (386)
+||++. +++.+.++++|+.+ |....+..+. ..+.. ........ +....++..+++..++++++.+++.|++.+
T Consensus 763 ~Gd~~~~~~~~~~~~~~~~~l~p~~~~~~~~~---~~~~~-~~~~~~~~-~~~v~~~~~~~~~~~~~~~d~~al~vl~~i 837 (995)
T 2fge_A 763 TADGKSLTNVEKSVAKFLDLLPENPSGGLVTW---DGRLP-LRNEAIVI-PTQVNYVGKAGNIYSTGYELDGSAYVISKH 837 (995)
T ss_dssp EECHHHHHHHHHHHHHHHHTSCSSCSSCSCCC---CCCCC-CCCEEEEC-SCSSBEEEEEEEGGGGTCCCCTHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHHHhhCccCCCCCCcc---cccCC-ccceEEEe-cCceEEEEEecCCCCCCCcccHHHHHHHHH
Confidence 999994 89999999999999 7644322111 11111 11111222 344455555665667888999999999999
Q ss_pred cCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeE-EEeeeCcccHHHHHHHHHHHHHHhhc-CCCHHHH
Q 016631 217 LGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFG-VYAVAKPDCLDDLAYAIMYETTKLAY-RVSEADV 294 (386)
Q Consensus 217 L~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~i~~l~~-~~~~~el 294 (386)
|+ .++||+.||++|++|++++.... .|.|. +++..+| +..++++.+.+.++.+.. ++|++||
T Consensus 838 Lg------------~~~L~~~iRe~g~aYg~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~~~~te~el 901 (995)
T 2fge_A 838 IS------------NTWLWDRVRVSGGAYGGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRGLDVDQETL 901 (995)
T ss_dssp HH------------HTHHHHHTTTTTCCSEEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHTCCCCHHHH
T ss_pred HC------------CCccHHHhhhcCCCcccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 98 47999999999999999988654 58888 7777777 688899999999988877 9999999
Q ss_pred HHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccC-HHHHHHHHhcCCHHHHHHHHHHhhcc-CCcEEEEecCCCCCC
Q 016631 295 TRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIP-FAELFARIDSVDASTVKRVANRFIYD-RDIAIAAMGPIQGLP 372 (386)
Q Consensus 295 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vt~~dv~~~~~~~l~~-~~~~~~i~gp~~~~~ 372 (386)
+++|..++.++.. ..++...+...+... ..|.+.+ .+++.+.|.+||.+||++++++|+.+ ++..++|+|+..+++
T Consensus 902 ~~ak~~li~~~~~-~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~~~i~ 979 (995)
T 2fge_A 902 TKAIIGTIGDVDS-YQLPDAKGYSSLLRH-LLGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDID 979 (995)
T ss_dssp HHHHHHHHHHHTC-CCCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECHHHHH
T ss_pred HHHHHHHHHhccC-CCCHHHHHHHHHHHH-HcCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEEEECCHHHHH
Confidence 9999999999854 466777777666544 3565444 47889999999999999999999987 567889999876544
Q ss_pred C
Q 016631 373 D 373 (386)
Q Consensus 373 ~ 373 (386)
+
T Consensus 980 ~ 980 (995)
T 2fge_A 980 A 980 (995)
T ss_dssp H
T ss_pred h
Confidence 3
No 19
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=6.9e-31 Score=265.48 Aligned_cols=330 Identities=9% Similarity=0.060 Sum_probs=257.5
Q ss_pred cCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHh-hCChHHHHHHHHHHhhcCC
Q 016631 21 MGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEV-EGQTEEVIFDHLHATAFQY 99 (386)
Q Consensus 21 ~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~ 99 (386)
.|..++++. .+.+.+.+++.+++++.+|+++.+.+.+|.|++++|+++|+.++.++++. ..+|...+.+.+...++++
T Consensus 567 ~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~~~p~~~a~~~l~~~l~~~ 645 (939)
T 1q2l_A 567 GGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVP 645 (939)
T ss_dssp TTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHTTSSS
T ss_pred cCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhhcChHHHHHHHHHHHhcCC
Confidence 477788888 89999999999999999999999999999999999999999999999997 4578888999999988875
Q ss_pred CCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCCCCcccccccCCCCccCCC
Q 016631 100 TPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKKLFTKLSADPTTASQLVANEPAIFTGS 179 (386)
Q Consensus 100 ~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (386)
. ++..++.+.+++++.++|++|++++|.+.+++++|+||++.+++.++++++++.++....+...... .... .+.
T Consensus 646 ~---~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~~~~~~~~~-~~~~-~~~ 720 (939)
T 1q2l_A 646 Y---FSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKD-VVVD-KKQ 720 (939)
T ss_dssp C---CCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCCSCCCCCEE-ECCC-SCE
T ss_pred C---CCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCCccccccce-EEeC-CCc
Confidence 2 4445788999999999999999999999999999999999999999999999888754322111100 0111 111
Q ss_pred c-eEEecCCCCceEE-EEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc-ccceeeeeeccccc-C
Q 016631 180 E-VRIIDDDIPLAQF-AVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI-NEIAESMMAFNTNY-K 255 (386)
Q Consensus 180 ~-~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre-~gl~y~~~~~~~~~-~ 255 (386)
. ......+..++.+ .+.++.+..+.++.+.+.++..++ +++||+.||+ +|++|+++++.... .
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~~-------------~s~lf~~LRek~gl~Y~v~s~~~~~~~ 787 (939)
T 1q2l_A 721 SVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIV-------------QPWFYNQLRTEEQLGYAVFAFPMSVGR 787 (939)
T ss_dssp EEEEEECCSSSCEEEEEEEECSSCCHHHHHHHHHHHHHHH-------------HHHHTHHHHTSCCSSSCEEEEEEEETT
T ss_pred eEEEecCCCCCCceeEEEEEecCCCCHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhCceeeeeEeecCC
Confidence 1 1122223234444 666665533334445555555554 6999999995 69999999876533 3
Q ss_pred Ccce-eEEEe-eeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCH-
Q 016631 256 DTGL-FGVYA-VAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPF- 332 (386)
Q Consensus 256 ~~~~-~~i~~-~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 332 (386)
..|. |.++. .++|+++.++++.+.+++.++..++|++||+++|+.++.++....+++...+..++..+...+...+.
T Consensus 788 ~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~~~t~~el~~~k~~l~~~~~~~~~s~~~~~~~~w~~i~~~~~~~d~~ 867 (939)
T 1q2l_A 788 QWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSR 867 (939)
T ss_dssp EEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHTCTTCCHH
T ss_pred eeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCCCCChH
Confidence 3342 55666 57899999999999999998766999999999999999999999899888888887776655655564
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhc-cCCc--EEEEecCCC
Q 016631 333 AELFARIDSVDASTVKRVANRFIY-DRDI--AIAAMGPIQ 369 (386)
Q Consensus 333 ~~~~~~i~~vt~~dv~~~~~~~l~-~~~~--~~~i~gp~~ 369 (386)
+++.+.|++||++||++++++++. ++.. ++.++|+..
T Consensus 868 ~~~~~~i~~vT~~dv~~~a~~~l~~~~~~~l~v~v~G~~~ 907 (939)
T 1q2l_A 868 DKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQN 907 (939)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHTTSCSSEEEEEEECCSSH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 788999999999999999999875 4444 455888763
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=99.97 E-value=1.4e-29 Score=257.13 Aligned_cols=334 Identities=9% Similarity=0.079 Sum_probs=265.9
Q ss_pred CCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHhhC-ChHHHHHHHHHHhhcCCC
Q 016631 22 GGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTFDQARITRERDVILREMEEVEG-QTEEVIFDHLHATAFQYT 100 (386)
Q Consensus 22 g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~ 100 (386)
|++++++++.+.+.+++++.+++++.+|+++.+++.+|.|+++.|++.|+.+...+++... +|...+...+...+++ +
T Consensus 586 G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~~~p~~~a~~~~~~~l~~-~ 664 (990)
T 3cww_A 586 GLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRAEQPHQHAMYYLRLLMTE-V 664 (990)
T ss_dssp TEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHBS-S
T ss_pred CeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcChHHHHHHHHHHHhCC-C
Confidence 8889999999999999999999999999999999999999999999999999999999766 8999999999999885 4
Q ss_pred CCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHH---HHHHhcCCCCC-CCcccccccCCCCcc
Q 016631 101 PLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQ---VKKLFTKLSAD-PTTASQLVANEPAIF 176 (386)
Q Consensus 101 ~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~ 176 (386)
++. ..+..+.|++++.++|.+|+++++.+.+++++|+||++.+++.++ +.++++.+|.. +.+............
T Consensus 665 ~~~--~~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 742 (990)
T 3cww_A 665 AWT--KDELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHAHTKPLLPSQLAAYREVQL 742 (990)
T ss_dssp CCC--HHHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHHCCEECCGGGCCCCCBBCC
T ss_pred CCC--HHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccCCCCCCchhhccccceEEc
Confidence 444 234788999999999999999999999999999999999998887 67777766533 111100000000011
Q ss_pred CCCce-EE--ecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhcc-ccceeeeeeccc
Q 016631 177 TGSEV-RI--IDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGI-NEIAESMMAFNT 252 (386)
Q Consensus 177 ~~~~~-~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre-~gl~y~~~~~~~ 252 (386)
+.+.. .+ ..++..++.+.+++..+.++.++.+++.|++.+| ++++|+.||+ .|++|++++...
T Consensus 743 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~ll~~il-------------~~~lf~~LRek~~lgY~v~s~~~ 809 (990)
T 3cww_A 743 PDRGWFVYQQRNEVHNNSGIEIYYQTDMQSTSENMFLELFAQII-------------SEPAFNTLRTKEQLGYIVFSGPR 809 (990)
T ss_dssp CTTEEEEEEEECSSCSSEEEEEEEEEEECCHHHHHHHHHHHHHH-------------HHHHHHHHTTTTCCCSEEEEEEE
T ss_pred CCCCeEEEEecCCCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHH-------------HHHHHHHHHhccCCcEEEEEEEE
Confidence 11222 12 3445667777777776667778899999999999 4999999996 699999998776
Q ss_pred ccCCcceeE--EEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCcc
Q 016631 253 NYKDTGLFG--VYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRI 330 (386)
Q Consensus 253 ~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (386)
...+...+. ++..++|+++.++++.+.+.+..+..++|++||+++|..++.++....+++...+..++..+...+...
T Consensus 810 ~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~~~te~el~~~k~~li~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 889 (990)
T 3cww_A 810 RANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIEDMTEEAFQKHIQALAIRRLDKPKKLSAESAKYWGEIISQQYNF 889 (990)
T ss_dssp EETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHTTCCCT
T ss_pred eeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCCC
Confidence 543333333 344557789999999999999988669999999999999999999988888888887877766555455
Q ss_pred CH-HHHHHHHhcCCHHHHHHHHHHhhcc-----CCcEEEEecCCCCC
Q 016631 331 PF-AELFARIDSVDASTVKRVANRFIYD-----RDIAIAAMGPIQGL 371 (386)
Q Consensus 331 ~~-~~~~~~i~~vt~~dv~~~~~~~l~~-----~~~~~~i~gp~~~~ 371 (386)
+. ++..+.|.+||.+||++++++++.+ ++..++|+|+..+.
T Consensus 890 d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~~~~ 936 (990)
T 3cww_A 890 DRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDS 936 (990)
T ss_dssp THHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTTC--
T ss_pred ChHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCEEEEEEECCCCcc
Confidence 54 7889999999999999999999886 56888999987644
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.97 E-value=4.7e-30 Score=258.01 Aligned_cols=349 Identities=12% Similarity=0.050 Sum_probs=256.6
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeec----------------ceEEEEEEEeccccHHHHHHHHHHhhcCCCCChHH
Q 016631 2 IFKGTEKRTARDLEEEIENMGGHLNAYTS----------------REQTTYYAKVLDKDVNNALDILADILQNSTFDQAR 65 (386)
Q Consensus 2 ~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~----------------~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~ 65 (386)
.-.||+++++.++.+.++.+++.++++++ ..++.+++.++.++++.+++++.+++.+|.|++.+
T Consensus 767 ~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~e 846 (1193)
T 3s5m_A 767 LENKTNKRSSEDFVILREKNIGSMSANVALYSKDDHLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKK 846 (1193)
T ss_dssp TTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCBTTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHH
T ss_pred HhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccccccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHH
Confidence 34699999999999999999888877763 34578999999999999999999999999999854
Q ss_pred -HHHHHHHHHHHHHHh-hCChHHHHHHHHHHhhcCCCCCCCCCCCCchhhcccC-------------HHHHHHHHHhhCC
Q 016631 66 -ITRERDVILREMEEV-EGQTEEVIFDHLHATAFQYTPLGRTILGPAQNIKTIT-------------KEHLQNYIHTHYT 130 (386)
Q Consensus 66 -~~~~k~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~i~-------------~~~l~~~~~~~~~ 130 (386)
+...+...+..+.+. ..++...+...+...+.+.+++.....| .+.+..++ .++|+++++++|+
T Consensus 847 Rlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l~~~L~~i~~~if~ 925 (1193)
T 3s5m_A 847 KVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNSKHYAHNIIYG-YENYLKLQEQLELAENDFKTLENILVRIRNKIFN 925 (1193)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCHHHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCcchhhhhhhCC-hHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHcC
Confidence 666666666666553 3445555555555555444333322222 22222222 6799999999999
Q ss_pred CCCeEEEEeCCCC-HHHHHHHHHHHhcCCCCC----CC----------cc--ccc---cc-CCCCccCCCceEEecCCCC
Q 016631 131 APRMVIAASGAVK-HEEVVEQVKKLFTKLSAD----PT----------TA--SQL---VA-NEPAIFTGSEVRIIDDDIP 189 (386)
Q Consensus 131 ~~~~~l~i~G~~~-~~~~~~~~~~~~~~~~~~----~~----------~~--~~~---~~-~~~~~~~~~~~~~~~~~~~ 189 (386)
++|+.+.++|+.+ .+.+.+.++++++.++.. .. .. ... .. ................+.+
T Consensus 926 ~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~ 1005 (1193)
T 3s5m_A 926 KKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPTF 1005 (1193)
T ss_dssp STTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHHHGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCCS
T ss_pred CCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccccccccceeEecCCc
Confidence 9999999999985 577776666666554320 00 00 000 00 0000011112223334667
Q ss_pred ceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEEEeeeCcc
Q 016631 190 LAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVAKPD 269 (386)
Q Consensus 190 ~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~~~~~~ 269 (386)
+.++..+++.....+++++++.|++.+|| +++||++|||+|++|++++++. ..|.|.++...+|
T Consensus 1006 v~yv~~~~~~~~~~~~d~~al~Vl~~iLg------------~~~L~~eIREkgGAYg~~s~~~---~~G~f~~~syrdp- 1069 (1193)
T 3s5m_A 1006 VNSVSMSGILFKPGEYLDPSFTVIVAALK------------NSYLWDTVRGLNGAYGVFADIE---YDGSVVFLSARDP- 1069 (1193)
T ss_dssp SBEEEEEEECSCTTCBCCTHHHHHHHHHH------------HTHHHHHHTTTTCCSEEEEEEC---TTSEEEEEEESBS-
T ss_pred ceEEEEEecCCCCCCCchHHHHHHHHHHC------------ccHHHHHHHhcCCeeEEEEecc---CCCcEEEEEEeCC-
Confidence 88888888888888899999999999998 5899999999877999999865 5788888887777
Q ss_pred cHHHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccC-HHHHHHHHhcCCHH
Q 016631 270 CLDDLAYAIMYETTKLAY---RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIP-FAELFARIDSVDAS 345 (386)
Q Consensus 270 ~~~~~~~~~~~~i~~l~~---~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vt~~ 345 (386)
+..++++.+.++++.+.. ++|++||+++|..++.++. ...++...+...... ...|.+.+ .+++.+.|.+||++
T Consensus 1070 ~~~~tl~~~~~~~~~l~~~~~~~teeEL~~ak~~~~~~~d-~p~~p~~~a~~~~~~-~~~Gl~~d~~~~~~~~I~aVT~e 1147 (1193)
T 3s5m_A 1070 NLEKTLATFRESAKGLRKMADTMTENDLLRYIINTIGTID-KPRRGIELSKLSFLR-LISNESEQDRVEFRKRIMNTKKE 1147 (1193)
T ss_dssp CSHHHHHHHHTHHHHHHHHHHHCCHHHHHHHHHHHHHHHS-CCCCTHHHHHHHHHH-HHTTCCHHHHHHHHHHHHTCCHH
T ss_pred CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhccc-ccCChHHHHHHHHHH-HHcCcCHHHHHHHHHHHHcCCHH
Confidence 578888888888877765 8999999999999999976 445677777777654 45676665 47899999999999
Q ss_pred HHHHHHHHhhcc---CCcEEEEecCCC
Q 016631 346 TVKRVANRFIYD---RDIAIAAMGPIQ 369 (386)
Q Consensus 346 dv~~~~~~~l~~---~~~~~~i~gp~~ 369 (386)
||+++|++++.+ ++..++++||..
T Consensus 1148 dv~~vA~~~~~~l~~~~~~~vvvG~~~ 1174 (1193)
T 3s5m_A 1148 DFYKFADLLESKVNEFEKNIVIITTKE 1174 (1193)
T ss_dssp HHHHHHHHHHHTHHHHTTEEEEEECHH
T ss_pred HHHHHHHHHhhhhcccCceEEEEcCHH
Confidence 999999999987 568899999854
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.94 E-value=2.2e-25 Score=183.31 Aligned_cols=176 Identities=16% Similarity=0.158 Sum_probs=156.8
Q ss_pred cCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEEEe
Q 016631 185 DDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYA 264 (386)
Q Consensus 185 ~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~ 264 (386)
..+.+++++.++|++++.++++.+++.|++.+|++ +.+|+|++.|||+|++|+++++...+.+.+.|.+++
T Consensus 19 ~~~~~~~~v~~~~~~~~~~~~d~~al~vl~~iLgg---------g~sSrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~ 89 (197)
T 3ih6_A 19 RRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILAD---------TPSSRLYHALVPTKLASGVFGFTMDQLDPGLAMFGA 89 (197)
T ss_dssp ---CCSCEEEEEEECCCTTSTTHHHHHHHHHHHHS---------STTSHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEE
T ss_pred ECCCCCceEEEEEecCCCCCCcHHHHHHHHHHHcC---------CCCchHHHHHHhcCceEEEEeccccccCCeEEEEEE
Confidence 34568899999999999888999999999999984 568999999998899999999887778899999999
Q ss_pred eeCcc-cHHHHHHHHHHHHHHhhc-CCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCHHHHHHHHhcC
Q 016631 265 VAKPD-CLDDLAYAIMYETTKLAY-RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSV 342 (386)
Q Consensus 265 ~~~~~-~~~~~~~~~~~~i~~l~~-~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 342 (386)
.++|+ +.+++.+.+.++|+++.. +++++||+++|+.++.++....+++..++..++...+ .|.+....++.+.|.+|
T Consensus 90 ~~~~~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~-~g~~~~~~~~~~~i~~v 168 (197)
T 3ih6_A 90 QLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDWRLFFLQRDRVREA 168 (197)
T ss_dssp ECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCTTHHHHHHHHHHTC
T ss_pred EECCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhC
Confidence 99997 699999999999999988 9999999999999999999999999999999987765 46555568899999999
Q ss_pred CHHHHHHHHHHhhccCCcEEEEecCCCC
Q 016631 343 DASTVKRVANRFIYDRDIAIAAMGPIQG 370 (386)
Q Consensus 343 t~~dv~~~~~~~l~~~~~~~~i~gp~~~ 370 (386)
|++||++++++||.+++.++++++|+.+
T Consensus 169 T~~dv~~~a~~~l~~~~~~~~~~~P~~~ 196 (197)
T 3ih6_A 169 KLDDVQRAAVAYLVRSNRTEGRYIPTEK 196 (197)
T ss_dssp CHHHHHHHHHHHSSGGGCEEEEECC---
T ss_pred CHHHHHHHHHHhCCccCeEEEEEeCCCC
Confidence 9999999999999998899999999653
No 23
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=98.69 E-value=6.6e-07 Score=81.79 Aligned_cols=186 Identities=8% Similarity=0.035 Sum_probs=127.9
Q ss_pred ecCCCCceEEEEEeccCCCCCc--hhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeE
Q 016631 184 IDDDIPLAQFAVAFAGASWTDP--DSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFG 261 (386)
Q Consensus 184 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~ 261 (386)
..+..+.+.+.+.+.......+ .....+++.+++.. |.......-+.+.+...|...+++... ....
T Consensus 17 ~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~-----gt~~~~~~~~~~~l~~~G~~~na~t~~------d~t~ 85 (421)
T 3hdi_A 17 KMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFK-----GTNTRSAQEIAEFFDSIGGQVNAFTSK------EYTC 85 (421)
T ss_dssp ECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTS-----BBSSSBHHHHHHHHHTTTSCEEEEECS------SCEE
T ss_pred ECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcC-----CCCCCCHHHHHHHHHHhCCceeeeecc------ceEE
Confidence 3444567788888887665443 34566788888864 333332334555665556554433332 2234
Q ss_pred EEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCH--HHHHHHH
Q 016631 262 VYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPF--AELFARI 339 (386)
Q Consensus 262 i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i 339 (386)
+++.+.+++++++++.+.+.+... .++++++++.|..+...+....+++...+.......+..+.+... -...+.|
T Consensus 86 ~~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~l 163 (421)
T 3hdi_A 86 YYAKVLDDHAGQAIDTLSDMFFHS--TFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETL 163 (421)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHSB--CCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHH
Confidence 556666788888888887776543 799999999999999999988888888887776665555544322 2246888
Q ss_pred hcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhhhh
Q 016631 340 DSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYW 383 (386)
Q Consensus 340 ~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~~~ 383 (386)
.++|.+|+.++.++++.+++++++++|+.+ -.....+++.++.
T Consensus 164 ~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~ 206 (421)
T 3hdi_A 164 NSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQ 206 (421)
T ss_dssp HHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcC
Confidence 999999999999999999999999999876 2223444555543
No 24
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=98.64 E-value=7.3e-07 Score=81.09 Aligned_cols=185 Identities=10% Similarity=-0.004 Sum_probs=127.3
Q ss_pred ecCCCCceEEEEEeccCCCCCc--hhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeE
Q 016631 184 IDDDIPLAQFAVAFAGASWTDP--DSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFG 261 (386)
Q Consensus 184 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~ 261 (386)
..+..+.+.+.+.+.......+ .....+++.+++-. |.......-+.+.+...|...+++... ....
T Consensus 17 ~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~-----Gt~~~~~~~~~~~l~~~G~~~na~t~~------d~t~ 85 (406)
T 3eoq_A 17 VVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFK-----GPEDMDALAVNRAFDRMGAQYNAFTSE------EATV 85 (406)
T ss_dssp ECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTT-----CCTTCCHHHHHHHHHHTTCEEEEEECS------SCEE
T ss_pred ECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhC-----CCCCCCHHHHHHHHHHhCCCccceecC------CeEE
Confidence 3444577888888887655443 34566788888754 333333335666665556544433322 2244
Q ss_pred EEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCH--HHHHHHH
Q 016631 262 VYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPF--AELFARI 339 (386)
Q Consensus 262 i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i 339 (386)
+++.+.++++.+++..+.+.+ .- .+++++|++.|..+...+....+++...+.......+..+.+... -...+.|
T Consensus 86 y~~~~~~~~l~~~l~ll~d~~-~p--~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~~i 162 (406)
T 3eoq_A 86 YYGAVLPEFAYDLLGLFAKLL-RP--ALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRESI 162 (406)
T ss_dssp EEEEECGGGHHHHHHHHHHHT-SC--CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHHHH
T ss_pred EEEEecHHHHHHHHHHHHHHh-cC--CCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHHHH
Confidence 566777888888888887776 43 799999999999999999988888888887777666555544332 2346788
Q ss_pred hcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhhh
Q 016631 340 DSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTY 382 (386)
Q Consensus 340 ~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~~ 382 (386)
.++|.+|+.++.++++.+++++++++|+.+.-.....+++.++
T Consensus 163 ~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~ 205 (406)
T 3eoq_A 163 TALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTE 205 (406)
T ss_dssp HHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHT
T ss_pred hhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999998643222233344443
No 25
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=98.60 E-value=4.7e-07 Score=80.68 Aligned_cols=169 Identities=11% Similarity=0.037 Sum_probs=117.0
Q ss_pred ecCCCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEEE
Q 016631 184 IDDDIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVY 263 (386)
Q Consensus 184 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~ 263 (386)
...+.+.+.+.+.++............+++.+++.. |.++....-+.+.+...|..++++.. .....++
T Consensus 6 ~~~~~~~v~~~~~~~~Gs~~e~~~G~ah~leh~lf~-----Gt~~~~~~~l~~~l~~~G~~~na~t~------~~~t~~~ 74 (352)
T 3cx5_B 6 RDAPTKISTLAVKVHGGSRYATKDGVAHLLNRFNFQ-----NTNTRSALKLVRESELLGGTFKSTLD------REYITLK 74 (352)
T ss_dssp ECCSCSEEEEEEEESCSGGGCSSTTHHHHHHHHTTS-----CBSSSCHHHHHHHHHHHTCEEEEEEC------SSCEEEE
T ss_pred eeCCCceEEEEEEEeeeccCCCcccHHHHHHHHhcc-----CcCCCCHHHHHHHHHHhCCeEEEEEc------cceEEEE
Confidence 344456667777777655444455677888888853 33333333455566555655444332 2244556
Q ss_pred eeeCcccHHHHHHHHHHHHHHhhcCCCHHHHH-HHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCHHHHHHHHhcC
Q 016631 264 AVAKPDCLDDLAYAIMYETTKLAYRVSEADVT-RARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSV 342 (386)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~-~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 342 (386)
+.+.+++++.+++.+.+.+..- .+++++|+ +.|..+...+....+++...+........+ +.+.......+.|+++
T Consensus 75 ~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~-~~p~~~~~~~~~l~~i 151 (352)
T 3cx5_B 75 ATFLKDDLPYYVNALADVLYKT--AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITF-RKGLGNPLLYDGVERV 151 (352)
T ss_dssp EEEEGGGHHHHHHHHHHHHHHB--CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTTTSCSSCCSSSCC
T ss_pred EEechhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCCCccchhhhccC
Confidence 6677778888888887776543 79999998 999999999988778888777666555443 3433221125789999
Q ss_pred CHHHHHHHHHHhhccCCcEEEEec
Q 016631 343 DASTVKRVANRFIYDRDIAIAAMG 366 (386)
Q Consensus 343 t~~dv~~~~~~~l~~~~~~~~i~g 366 (386)
|.+|+.++.++++.+++++++++|
T Consensus 152 t~~~l~~f~~~~y~~~n~~l~v~G 175 (352)
T 3cx5_B 152 SLQDIKDFADKVYTKENLEVSGEN 175 (352)
T ss_dssp CHHHHHHHHHHHCCGGGEEEEEES
T ss_pred CHHHHHHHHHHhCCcCcEEEEEeC
Confidence 999999999999999999999999
No 26
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=98.60 E-value=7.2e-07 Score=81.63 Aligned_cols=173 Identities=9% Similarity=0.018 Sum_probs=116.9
Q ss_pred cCCCCceEEEEEeccCCCCC--chhhHHHHHHHHcCCCCCCCCCC----CCcccHHHHHhccccceeeeeecccccCCcc
Q 016631 185 DDDIPLAQFAVAFAGASWTD--PDSIALMVMQAMLGSWNKNSVGG----KHMGSELAQRVGINEIAESMMAFNTNYKDTG 258 (386)
Q Consensus 185 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~ll~~iL~~~~~~~~~~----~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~ 258 (386)
.+..+.+.+.+.+..+.... .......++.+++.. |.+ .....-+.+.+...|..+++.... .
T Consensus 20 ~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~-----Gt~~~~~~~~~~~~~~~l~~~G~~~~a~t~~------~ 88 (424)
T 3amj_B 20 NRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDA-----GTGSGKSALDENAIADRLADIGARLGGGAEA------D 88 (424)
T ss_dssp CCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGG-----EECSTTSCEEHHHHHHHHHHTTCEEEEEECS------S
T ss_pred CCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHh-----ccCCCccCCCHHHHHHHHHHhCCEEEeecCC------C
Confidence 34456778888888765433 244667888888853 222 111223444454456655443321 2
Q ss_pred eeEEEeeeCcccH--HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCHHHHH
Q 016631 259 LFGVYAVAKPDCL--DDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELF 336 (386)
Q Consensus 259 ~~~i~~~~~~~~~--~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (386)
...+++.+.+++. ..+++.+.+.+... .+++++|++.|..+...+....+++...+.......+..+.+.......
T Consensus 89 ~t~~~~~~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~~ 166 (424)
T 3amj_B 89 RASFSLRVLSSPAERNSALTILRDILAHP--TFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVSSV 166 (424)
T ss_dssp CEEEEEEEESSHHHHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCCCH
T ss_pred eEEEEEEEeccccChhHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCCCH
Confidence 2445566666666 77777777665433 7999999999999999998877788877776666555444443211156
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCC
Q 016631 337 ARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQG 370 (386)
Q Consensus 337 ~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~ 370 (386)
+.|+++|.+++.++.++++.++++.++++|+.+.
T Consensus 167 ~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~ 200 (424)
T 3amj_B 167 ATLQKISRDQLVSFHRTHYVARTAVVTLVGDITR 200 (424)
T ss_dssp HHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCH
T ss_pred HHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCH
Confidence 7788999999999999999999999999998653
No 27
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=98.57 E-value=2.4e-06 Score=78.76 Aligned_cols=176 Identities=12% Similarity=0.085 Sum_probs=119.8
Q ss_pred eEEecCCCCceEEEEEeccCCCCCc--hhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcc
Q 016631 181 VRIIDDDIPLAQFAVAFAGASWTDP--DSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTG 258 (386)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~ 258 (386)
+.+...+.+.+.+.+.++.+....+ .....+++.+++.. |.......-+.+.+...|... +++.. .+
T Consensus 25 v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~-----GT~~~~~~~~~~~l~~~G~~~--na~t~--~d-- 93 (446)
T 1pp9_A 25 VASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFK-----GTKNRPGNALEKEVESMGAHL--NAYST--RE-- 93 (446)
T ss_dssp EEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTS-----CBSSSTTTHHHHHHHHTTCEE--EEEEC--SS--
T ss_pred EEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcC-----CCCCCCHHHHHHHHHHcCCEE--EEEEc--CC--
Confidence 3333334466778888886655432 34566788888853 333322334555555556543 33322 11
Q ss_pred eeEEEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCH--HHHH
Q 016631 259 LFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPF--AELF 336 (386)
Q Consensus 259 ~~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 336 (386)
...+++.+..+++++++..+.+.+... .+++++|++.|..+...+....+++...+.......+..+.+... -...
T Consensus 94 ~t~~~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 94 HTAYYIKALSKDLPKAVELLADIVQNC--SLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHHHHB--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 245556666778888888888877654 699999999999999999887788877776665554444444321 2246
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 337 ARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 337 ~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
+.|+++|.+++.++.++++.+++++++++|+.+
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~ 204 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLE 204 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCC
Confidence 778889999999999999999999999999865
No 28
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=98.51 E-value=2.6e-06 Score=78.33 Aligned_cols=168 Identities=10% Similarity=0.014 Sum_probs=115.8
Q ss_pred CceEEEEEeccCCCCCc--hhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEEEeee
Q 016631 189 PLAQFAVAFAGASWTDP--DSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYAVA 266 (386)
Q Consensus 189 ~~~~v~~~~~~~~~~~~--~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~~~ 266 (386)
+.+.+.+.++......+ .....+++.+++.. |.+.....-+.+.+...|... +++.. .....+++.+
T Consensus 27 ~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~-----Gt~~~~~~~l~~~l~~~g~~~--na~t~----~~~t~~~~~~ 95 (443)
T 1hr6_B 27 SSATVGIFVDAGSRAENVKNNGTAHFLEHLAFK-----GTQNRPQQGIELEIENIGSHL--NAYTS----RENTVYYAKS 95 (443)
T ss_dssp SEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTS-----BBSSCBHHHHHHHHHHTTCEE--EEEEC----SSEEEEEEEE
T ss_pred CEEEEEEEEccccCCCCCCCCcHHHHHHHHhhc-----CCCCCCHHHHHHHHHHcCCeE--EEEEC----CCeEEEEEEe
Confidence 36678888886654432 34566788887753 333322334555555555543 33332 1234556667
Q ss_pred CcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCH--HHHHHHHhcCCH
Q 016631 267 KPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPF--AELFARIDSVDA 344 (386)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~vt~ 344 (386)
.+++++.+++.+.+.+... .+++++|++.|..+...+....+++...+.......+..+.+... -...+.|+++|.
T Consensus 96 ~~~~l~~~l~ll~d~~~~p--~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~ 173 (443)
T 1hr6_B 96 LQEDIPKAVDILSDILTKS--VLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITR 173 (443)
T ss_dssp EGGGHHHHHHHHHHHHHSB--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCHHHHHHCCH
T ss_pred cHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCcCCHHHHhhCCH
Confidence 7788888888887776543 799999999999999999988788877776665555444444321 124677889999
Q ss_pred HHHHHHHHHhhccCCcEEEEecCCC
Q 016631 345 STVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 345 ~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
+++.++.++++.+++++++++|+.+
T Consensus 174 ~~l~~f~~~~y~~~n~~l~v~Gd~~ 198 (443)
T 1hr6_B 174 TDLKDYITKNYKGDRMVLAGAGAVD 198 (443)
T ss_dssp HHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred HHHHHHHHhcCcCCCEEEEEEcCCC
Confidence 9999999999999999999999865
No 29
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=98.51 E-value=9.5e-07 Score=81.06 Aligned_cols=172 Identities=13% Similarity=0.063 Sum_probs=117.5
Q ss_pred cCCCCceEEEEEeccCCCCC-chhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEEE
Q 016631 185 DDDIPLAQFAVAFAGASWTD-PDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVY 263 (386)
Q Consensus 185 ~~~~~~~~v~~~~~~~~~~~-~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~ 263 (386)
.+..+.+.+.+.+..+.... .......++..++.. |.+.....-+.+.+...|..++++... ....++
T Consensus 30 ~~~~~~~~~~~~~~~Gs~~e~~~~g~a~lle~ll~~-----gt~~~~~~~l~~~l~~~g~~~~a~t~~------~~~~~~ 98 (434)
T 3gwb_A 30 ARELPMFDLRLIFAAGSSQDGNAPGVALLTNAMLNE-----GVAGKDVGAIAQGFEGLGADFGNGAYK------DMAVAS 98 (434)
T ss_dssp CCSSSEEEEEEEESCSGGGCTTSTTHHHHHHHHGGG-----EETTEEHHHHHHHHHTTTCEEEEEECS------SCEEEE
T ss_pred CCCCCEEEEEEEEecccccCCcchhHHHHHHHHHhc-----CcccCCHHHHHHHHHHhCCEEEeeecC------CeEEEE
Confidence 33457778888888765443 334456777777753 222211223555555556665544332 233444
Q ss_pred eeeCccc--HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCHH--HHHHHH
Q 016631 264 AVAKPDC--LDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFA--ELFARI 339 (386)
Q Consensus 264 ~~~~~~~--~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i 339 (386)
+.+.+++ ...+++.+.+.+... .+++++|++.|..+...+....+++...+.......+..+.+.... ...+.|
T Consensus 99 ~~~~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~~~l 176 (434)
T 3gwb_A 99 LRSLSAVDKREPALKLFAEVVGKP--TFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGDAKSI 176 (434)
T ss_dssp EEEECSHHHHHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCCTTTT
T ss_pred EEecCccccHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCCHHHH
Confidence 5554444 888888777766533 7999999999999999999888888888876666655544443321 246788
Q ss_pred hcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 340 DSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 340 ~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
.++|.+++.++.++++.++++.++++|+.+
T Consensus 177 ~~it~~~l~~f~~~~y~~~~~~l~v~G~~~ 206 (434)
T 3gwb_A 177 PPITLAQLKAFHAKAYAAGNVVIALVGDLS 206 (434)
T ss_dssp TTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HhCCHHHHHHHHHHhcCcCCeEEEEEcCCC
Confidence 999999999999999999999999999865
No 30
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=98.50 E-value=3.6e-06 Score=77.47 Aligned_cols=172 Identities=14% Similarity=0.091 Sum_probs=115.7
Q ss_pred cCCCCceEEEEEeccCCCCCc--hhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEE
Q 016631 185 DDDIPLAQFAVAFAGASWTDP--DSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGV 262 (386)
Q Consensus 185 ~~~~~~~~v~~~~~~~~~~~~--~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i 262 (386)
.+..+.+.+.+.+.......+ .....+++.+++-. |.+.....-+.+.+...|... +++.. .+... +
T Consensus 23 ~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~-----Gt~~~~~~~l~~~l~~~g~~~--na~t~--~d~t~--y 91 (445)
T 3ami_A 23 DHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFK-----GTKDVGPGEFSKRVAAMGGRD--NAFTT--RDYTA--Y 91 (445)
T ss_dssp CTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTS-----CBSSSCTTHHHHHHHHTTCEE--EEEEC--SSCEE--E
T ss_pred CCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcC-----CCCCCCHHHHHHHHHHhCCcc--ccccC--CCeEE--E
Confidence 344567778888876554332 34456677777753 333333445666666666543 33332 22233 3
Q ss_pred EeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhH-hhccCchHHHHHHHHHHHhhCCccCH--HHHHHHH
Q 016631 263 YAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLL-LHIDGTSPVAEDIGRQLLTYGRRIPF--AELFARI 339 (386)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i 339 (386)
++.+.++++..+++.+.+.+..- .+++++|++.|..+...+. ...+++...+.......++.+.+... -...+.|
T Consensus 92 ~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~e~l 169 (445)
T 3ami_A 92 YQQVPSSRLSDVMGLEADRMANL--VVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIGWMNDI 169 (445)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTCCHHHH
T ss_pred EEECCHHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCCCHHHH
Confidence 44556678888888877776532 7999999999999999988 55677777766555555544444332 1246788
Q ss_pred hcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 340 DSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 340 ~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
.++|.+++.++.++++.+++++++++|+.+
T Consensus 170 ~~it~~~l~~f~~~~y~p~n~~l~vvGd~d 199 (445)
T 3ami_A 170 QNMTAQDVRDWYKRWYGPNNATVVVVGDVE 199 (445)
T ss_dssp HHCCHHHHHHHHHHHCSGGGEEEEEEESCC
T ss_pred hhCCHHHHHHHHHHhCCccceEEEEEcCCC
Confidence 899999999999999999999999999865
No 31
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=98.40 E-value=6.2e-06 Score=76.62 Aligned_cols=175 Identities=8% Similarity=-0.019 Sum_probs=119.1
Q ss_pred eEEecCCCCceEEEEEeccCCCCC--chhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcc
Q 016631 181 VRIIDDDIPLAQFAVAFAGASWTD--PDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTG 258 (386)
Q Consensus 181 ~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~ 258 (386)
+.....+.+.+.+.+.+..+.... ......+++.+++.. |.......-+.+.+...|..++++... .
T Consensus 17 v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~-----Gt~~~~~~~~~~~le~~G~~~na~t~~------d 85 (475)
T 1hr6_A 17 VATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFK-----STEHVEGRAMAETLELLGGNYQCTSSR------E 85 (475)
T ss_dssp EEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTS-----CBTTBCHHHHHHHHHHTTSCEEEEECS------S
T ss_pred EEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhC-----CCCCCCHHHHHHHHHHcCCEEEEEEcc------C
Confidence 333334456778888888665433 234566777777753 332222234555555456654443321 2
Q ss_pred eeEEEeeeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCH--HHHH
Q 016631 259 LFGVYAVAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPF--AELF 336 (386)
Q Consensus 259 ~~~i~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 336 (386)
...+++.+.+++++.+++.+.+.+... .+++++|++.|..++..+....+++...+.......+..+.+... -...
T Consensus 86 ~t~y~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 86 NLMYQASVFNQDVGKMLQLMSETVRFP--KITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp CEEEEEEECGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 355566777788888888888776543 799999999999999999887788888777666655544433221 2245
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 337 ARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 337 ~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
+.|+++|.+|+.++.++++.+++++++++| .+
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~d 195 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVG-VP 195 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEES-SC
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeC-CC
Confidence 778999999999999999999999999999 54
No 32
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=98.33 E-value=7.4e-06 Score=75.17 Aligned_cols=167 Identities=10% Similarity=0.014 Sum_probs=114.4
Q ss_pred CCCceEEEEEeccCCCCCc--hhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEEEe
Q 016631 187 DIPLAQFAVAFAGASWTDP--DSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGVYA 264 (386)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~--~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i~~ 264 (386)
..+.+.+.+.++.+....+ .....+++.+++.. |.+.....-+.+.+...|..++++.. .....+++
T Consensus 41 ~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~-----gt~~~~~~~~~~~l~~~G~~~na~t~------~~~t~~~~ 109 (439)
T 1pp9_B 41 YAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSL-----TTKGASSFKITRGIEAVGGKLSVTST------RENMAYTV 109 (439)
T ss_dssp CCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTS-----CBSSSCHHHHHHHHHHTTCEEEEEEC------SSCEEEEE
T ss_pred CCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcC-----CCCcCCHHHHHHHHHHhCCeEEEEec------ceEEEEEE
Confidence 4566778888887654332 35566788887753 22222223455555555665543332 23445566
Q ss_pred eeCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccC--HHHHHHHHhcC
Q 016631 265 VAKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIP--FAELFARIDSV 342 (386)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~v 342 (386)
.+.++++..+++.+.+.+... .+++++|++.|..+...+....+++...+.......+.. .+.. .....+.|.++
T Consensus 110 ~~~~~~l~~~l~ll~~~~~~p--~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~i 186 (439)
T 1pp9_B 110 ECLRDDVDILMEFLLNVTTAP--EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYR-NALANSLYCPDYRIGKV 186 (439)
T ss_dssp EEEGGGHHHHHHHHHHHHHCB--CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBS-SGGGSCSSCCGGGTTTC
T ss_pred EeehhhHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhc-CCCCCCccCCHHHHhhc
Confidence 677788888888888776543 799999999999999999887778877776655554432 3221 12345678899
Q ss_pred CHHHHHHHHHHhhccCCcEEEEecC
Q 016631 343 DASTVKRVANRFIYDRDIAIAAMGP 367 (386)
Q Consensus 343 t~~dv~~~~~~~l~~~~~~~~i~gp 367 (386)
|.+|+.++.++++.++++.++++|+
T Consensus 187 t~~~l~~f~~~~y~~~~~~l~v~G~ 211 (439)
T 1pp9_B 187 TPVELHDYVQNHFTSARMALIGLGV 211 (439)
T ss_dssp CHHHHHHHHHHHCSGGGEEEEEESS
T ss_pred CHHHHHHHHHHhCCCCceEEEEeCC
Confidence 9999999999999999999999997
No 33
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=98.33 E-value=5.9e-06 Score=75.44 Aligned_cols=173 Identities=9% Similarity=0.064 Sum_probs=115.7
Q ss_pred CCCceEEEEEeccCCCCCchhhHHHHHHHHcCCCCCCCCCCCC-cccHHHHHhccc-cceeeeeecccccCCcceeEEEe
Q 016631 187 DIPLAQFAVAFAGASWTDPDSIALMVMQAMLGSWNKNSVGGKH-MGSELAQRVGIN-EIAESMMAFNTNYKDTGLFGVYA 264 (386)
Q Consensus 187 ~~~~~~v~~~~~~~~~~~~~~~~~~ll~~iL~~~~~~~~~~~~-~~s~L~~~lre~-gl~y~~~~~~~~~~~~~~~~i~~ 264 (386)
..+.+.+.+.+..+....+ ....+++.+++.. |.++. ....+.+.+... |..+++..... .....+.+++
T Consensus 21 ~~~~~~~~~~~~~g~~~e~-~g~a~ll~~~l~~-----gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~--~t~~~~~~~~ 92 (425)
T 3d3y_A 21 KYKTVRLLVRFNTRLNHET-ITKRTLLSSLMET-----NSLNYPNQVKLSERLAELYGASFGIGVSKK--GNQHWFNISM 92 (425)
T ss_dssp SCSEEEEEEEEEEECCTTT-HHHHHHHHHHHHH-----CCSSSCSHHHHHHHHHHTTSCEEEEEEEEE--TTEEEEEEEE
T ss_pred ccceEEEEEEEeCCCCccc-hhHHHHHHHHHHh-----hhhcCCCHHHHHHHHHHHhCceEeeeeeec--CceEEEEEEE
Confidence 4467788888886654332 4456777777742 22221 112355555554 76665554322 1112244555
Q ss_pred eeCcc-------cHHHHHHHHHHHHHHhhcC-----CCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHh-hCCccC
Q 016631 265 VAKPD-------CLDDLAYAIMYETTKLAYR-----VSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLT-YGRRIP 331 (386)
Q Consensus 265 ~~~~~-------~~~~~~~~~~~~i~~l~~~-----~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 331 (386)
.+.++ ++..+++.+.+.+... . +++++|++.|..+...+....+++...+.......+. .+.+..
T Consensus 93 ~~~~~~~~~~~~~l~~~l~ll~~~l~~p--~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 170 (425)
T 3d3y_A 93 NIVNDHYLQDSQVLAEAVDFLKEIIFAP--NIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQK 170 (425)
T ss_dssp EEECGGGCSSCCHHHHHHHHHHHHHHSC--SEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTCTTTT
T ss_pred EecChhhccchhHHHHHHHHHHHHHhCc--ccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCCCCcc
Confidence 55443 6888888887776543 5 8999999999999999988777888777666655554 344433
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 332 --FAELFARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 332 --~~~~~~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
.....+.|.++|.+|+.++.++++.++++.++++|+.+
T Consensus 171 ~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 210 (425)
T 3d3y_A 171 IPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVN 210 (425)
T ss_dssp SCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCC
T ss_pred CCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 22346778899999999999999999999999999864
No 34
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=98.28 E-value=2.9e-05 Score=71.01 Aligned_cols=165 Identities=8% Similarity=0.068 Sum_probs=114.6
Q ss_pred cCCCCceEEEEEeccCCCCC--chhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccccceeeeeecccccCCcceeEE
Q 016631 185 DDDIPLAQFAVAFAGASWTD--PDSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGINEIAESMMAFNTNYKDTGLFGV 262 (386)
Q Consensus 185 ~~~~~~~~v~~~~~~~~~~~--~~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~gl~y~~~~~~~~~~~~~~~~i 262 (386)
.+..+.+.+.+.+..+.... .+....+++.+++.. + +.. ..+...|..++++... ....+
T Consensus 17 ~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~---------g-t~~--~~~~~~G~~~na~t~~------~~t~~ 78 (431)
T 3cx5_A 17 NPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLS---------K-ENS--AVAAKEGLALSSNISR------DFQSY 78 (431)
T ss_dssp CTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTS---------H-HHH--HHHHHTTCEEEEEECS------SCEEE
T ss_pred CCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhc---------C-CCc--ccHHHcCCeeeeeecC------CeEEE
Confidence 33446778888888765443 345677888888863 1 111 1122346554443322 23456
Q ss_pred EeeeCcccHHHHHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHhhHhhccCc-hHHHHHHHHHHHhhCCccC--HHHHH
Q 016631 263 YAVAKPDCLDDLAYAIMYETTKLAYR---VSEADVTRARNQLKSSLLLHIDGT-SPVAEDIGRQLLTYGRRIP--FAELF 336 (386)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~l~~~---~~~~el~~~k~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~ 336 (386)
++.+.++++..+++.+.+.+... . +++++|++.|..+...+....+++ ...+.......+..+.+.. .....
T Consensus 79 ~~~~~~~~l~~~l~ll~~~~~~p--~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~ 156 (431)
T 3cx5_A 79 IVSSLPGSTDKSLDFLNQSFIQQ--KANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTL 156 (431)
T ss_dssp EEEECSTTHHHHHHHHHHHHHTC--STTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCCH
T ss_pred EEEechhhHHHHHHHHHHHHhCc--ccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCCH
Confidence 67777788888888888776543 4 999999999999999988777778 7777666555544444432 22356
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCcEEEEecCCC
Q 016631 337 ARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQ 369 (386)
Q Consensus 337 ~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~ 369 (386)
+.|.++|.+|+.++.++++.++++.++++|+.+
T Consensus 157 ~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 189 (431)
T 3cx5_A 157 ESLENLVVADLESFANNHFLNSNAVVVGTGNIK 189 (431)
T ss_dssp HHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCC
Confidence 788999999999999999999999999999865
No 35
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.22 E-value=2e-05 Score=63.70 Aligned_cols=108 Identities=15% Similarity=0.099 Sum_probs=84.7
Q ss_pred eEEEEEEEeccc-cHHHHHHHHHHhhcCC---CCChHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHhhcCCCCCCCCCC
Q 016631 32 EQTTYYAKVLDK-DVNNALDILADILQNS---TFDQARITRERDVILREMEEVEGQTEEVIFDHLHATAFQYTPLGRTIL 107 (386)
Q Consensus 32 ~~~~~~~~~~~~-~l~~~l~~l~~~~~~~---~~~~~~~~~~k~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 107 (386)
..+.+++.+.++ +++.+++.+.+.+.+. .++++++++.|..+...+.....++...+.......+++ .+. ...
T Consensus 83 g~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g-~~~--~~~ 159 (197)
T 3ih6_A 83 GLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASG-DWR--LFF 159 (197)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTT-CTT--HHH
T ss_pred eEEEEEEEECCCCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcC-CHH--HHH
Confidence 345666666666 5898888888777554 589999999999999999888888888888777776663 221 112
Q ss_pred CCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCCC
Q 016631 108 GPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGAV 142 (386)
Q Consensus 108 g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~ 142 (386)
...+.|+++|.++++++.++++.+.+.+++++|.-
T Consensus 160 ~~~~~i~~vT~~dv~~~a~~~l~~~~~~~~~~~P~ 194 (197)
T 3ih6_A 160 LQRDRVREAKLDDVQRAAVAYLVRSNRTEGRYIPT 194 (197)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHSSGGGCEEEEECC-
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCccCeEEEEEeCC
Confidence 24577899999999999999999999999998853
No 36
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=97.43 E-value=0.0001 Score=68.65 Aligned_cols=179 Identities=12% Similarity=0.033 Sum_probs=100.2
Q ss_pred CCceEEEEEeccCCCCCc--hhhHHHHHHHHcCCCCCCCCCCCCcccHHHHHhccc--cceeeeeecccccCCcceeEEE
Q 016631 188 IPLAQFAVAFAGASWTDP--DSIALMVMQAMLGSWNKNSVGGKHMGSELAQRVGIN--EIAESMMAFNTNYKDTGLFGVY 263 (386)
Q Consensus 188 ~~~~~v~~~~~~~~~~~~--~~~~~~ll~~iL~~~~~~~~~~~~~~s~L~~~lre~--gl~y~~~~~~~~~~~~~~~~i~ 263 (386)
.+.+.+.+.++......+ .....+++.+++.. |.+.....-+.+.+.+. .++-.++++.. .+...+.
T Consensus 47 ~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~-----GT~~~~~~~~~~~~~~~~~~~G~~~na~t~--~d~t~y~-- 117 (492)
T 3go9_A 47 SDRIELRLIVNTGSLSENTQEVGFAHLLPRLALM-----SSASFTPAQLQSLWQQGIDNERPLPPAITS--YDFTLYS-- 117 (492)
T ss_dssp TSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHH-----CCTTCCHHHHHHHHHTCSCSSSCCCSEEEC--SSCEEEE--
T ss_pred CCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHhcCCCcceEeC--CCeEEEE--
Confidence 356788888887655443 34456788887753 33322222233333221 11112233322 2233333
Q ss_pred eeeCc---ccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHh----hCCccCHHHHH
Q 016631 264 AVAKP---DCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLT----YGRRIPFAELF 336 (386)
Q Consensus 264 ~~~~~---~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 336 (386)
+.+.. +++++++..+.+.+... .|++++|++.|...+..+....+++..... +..+. .+.+.. .
T Consensus 118 ~~~~~~~~~~l~~~l~ll~d~~~~p--~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~----~ 188 (492)
T 3go9_A 118 LSLPNNRPDLLKDALAWLSDTAGNL--AVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSSLIGHDPG----Q 188 (492)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHCC--CCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTSTTTTCCTT----C
T ss_pred EECCCCcHHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCCcccCCCc----h
Confidence 34443 56777777776665432 899999999987655444433334433221 11111 122211 2
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHHhhhhc
Q 016631 337 ARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRRRTYWN 384 (386)
Q Consensus 337 ~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~~~~~~ 384 (386)
+.|+++|.+|+.++.++++.+++++++++|+.+.-.....+++.++.|
T Consensus 189 ~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~ 236 (492)
T 3go9_A 189 PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSEL 236 (492)
T ss_dssp CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTC
T ss_pred hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcC
Confidence 458999999999999999999999999999864222223344444433
No 37
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=55.36 E-value=31 Score=21.98 Aligned_cols=47 Identities=11% Similarity=0.021 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcC
Q 016631 12 RDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQN 58 (386)
Q Consensus 12 ~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~ 58 (386)
..+...|+..|+.+--....+...+.+..+.+..+.+.+.|.++...
T Consensus 20 g~v~~~L~~~~~~I~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~G 66 (76)
T 3lh2_S 20 TGILWLLGQVDGKIINSDVQAFVLLRVALPAAKVAEFSAKLADFSGG 66 (76)
T ss_dssp HHHHHHHHHTTCEEEEEEEEEEEEEEEEECC-CC-CHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCEEEcccccCeEEEEEEECHHHHHHHHHHHHHHhCC
Confidence 45788899999887666667779999999999999999999887654
No 38
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=48.07 E-value=58 Score=21.82 Aligned_cols=53 Identities=23% Similarity=0.157 Sum_probs=35.9
Q ss_pred HhhHhhccCchHHHHHHHHHHHhhCCccCH-HHHHHHHhcCCHHHHHHHHHHhh
Q 016631 303 SSLLLHIDGTSPVAEDIGRQLLTYGRRIPF-AELFARIDSVDASTVKRVANRFI 355 (386)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~vt~~dv~~~~~~~l 355 (386)
..+..--+.+.+.++.+.-.+..+|.+.+. +++......|..+.+..+....|
T Consensus 19 ~~~~NF~EDv~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt~F 72 (104)
T 2v75_A 19 AGIPNFNEDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQTAF 72 (104)
T ss_dssp TTSTTCCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred ccccCccccHHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 333333456777777777665555666664 67888889999997777766544
No 39
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=43.15 E-value=39 Score=18.18 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhc-CCCHHHHHHHHHH
Q 016631 276 YAIMYETTKLAY-RVSEADVTRARNQ 300 (386)
Q Consensus 276 ~~~~~~i~~l~~-~~~~~el~~~k~~ 300 (386)
..+..++..+++ ||+.+|+......
T Consensus 3 aalkselqalkkegfspeelaalese 28 (48)
T 1g6u_A 3 AALKSELQALKKEGFSPEELAALESE 28 (48)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345677777877 9999998765443
No 40
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=41.30 E-value=38 Score=21.78 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=36.8
Q ss_pred CCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCC
Q 016631 99 YTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 141 (386)
Q Consensus 99 ~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~ 141 (386)
++++....++....|++.+.++...-..+.|....+++.|.|+
T Consensus 33 ~~~sDyTLy~~Vs~I~tt~~~~A~~eLs~~Y~aqgv~vsv~~n 75 (85)
T 3ov5_A 33 NLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSAN 75 (85)
T ss_dssp CSSSCCBCCGGGGGCEESCHHHHHHHHHHHHGGGTEEEEEETT
T ss_pred cCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEECC
Confidence 4556666778888999999999888899999999999999997
No 41
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=41.01 E-value=29 Score=29.21 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=32.2
Q ss_pred hhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHH
Q 016631 112 NIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKK 153 (386)
Q Consensus 112 ~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~ 153 (386)
.+++.+++++++..+.. ..++.+.++|+++++.+.++.+.
T Consensus 234 ~LDn~~~~~l~~av~~i--~~~v~ieaSGGI~~~~i~~~a~t 273 (298)
T 3gnn_A 234 LLDNFTLDMMRDAVRVT--EGRAVLEVSGGVNFDTVRAIAET 273 (298)
T ss_dssp EEESCCHHHHHHHHHHH--TTSEEEEEESSCSTTTHHHHHHT
T ss_pred EECCCCHHHHHHHHHHh--CCCCeEEEEcCCCHHHHHHHHHc
Confidence 45778889998888766 46889999999999988887653
No 42
>2l4w_A Uncharacterized protein; type IV secretion system, VIRB7, N0 domain, membrane protein xanthomonas, lipoprotein; NMR {Xanthomonas axonopodis PV}
Probab=36.19 E-value=51 Score=22.59 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=37.3
Q ss_pred CCCCCCCCCCCchhhcccCHHHHHHHHHhhCCCCCeEEEEeCC
Q 016631 99 YTPLGRTILGPAQNIKTITKEHLQNYIHTHYTAPRMVIAASGA 141 (386)
Q Consensus 99 ~~~~~~~~~g~~~~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~ 141 (386)
++++....++..+.|.+.+.++...-..+.|....+++.|.|+
T Consensus 63 ~~~~DyTLy~~vs~I~tt~~~qA~~ELs~iY~akgv~vsv~~~ 105 (120)
T 2l4w_A 63 NLPSDYTLIGPVSAISTTSVQQAATELSAVYAAQGVSVSVSAN 105 (120)
T ss_dssp CCSSCCBCCSTTTTCCBSCHHHHHHHHHHHHGGGTEEEEECSS
T ss_pred cCccceeeehhhhhhhhhhHHHHHHHHHHHHHhCCeEEEEECC
Confidence 5566777788889999999999888889999999999999986
No 43
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=33.66 E-value=89 Score=27.13 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=43.4
Q ss_pred CChHHHHHHHHhcCCeeeeee---------cceEEEEEEEe------ccccHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 016631 9 RTARDLEEEIENMGGHLNAYT---------SREQTTYYAKV------LDKDVNNALDILADILQNSTFDQARITRERDVI 73 (386)
Q Consensus 9 ~~~~~l~~~l~~~g~~~~~~t---------~~~~~~~~~~~------~~~~l~~~l~~l~~~~~~~~~~~~~~~~~k~~~ 73 (386)
.+..++.+.|...|+.+.... ....+.+.+.. ..++++.+++.|.+.+.... +++.+++.|+.|
T Consensus 322 ~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 400 (405)
T 2vi8_A 322 LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKNVG-SEQALEEARQRV 400 (405)
T ss_dssp CCHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTCTT-CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhccc-ccccHHHHHHHH
Confidence 356778888988888776532 12344444432 26789999999999987765 566676666654
Q ss_pred H
Q 016631 74 L 74 (386)
Q Consensus 74 ~ 74 (386)
.
T Consensus 401 ~ 401 (405)
T 2vi8_A 401 A 401 (405)
T ss_dssp H
T ss_pred H
Confidence 4
No 44
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=31.59 E-value=43 Score=23.48 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=40.1
Q ss_pred ccccCCCCChHHHHHHHHhcCCeeeeeecceEEEEEEEe----ccccHHHHHHHHHHhhcCCCCChHHHH
Q 016631 2 IFKGTEKRTARDLEEEIENMGGHLNAYTSREQTTYYAKV----LDKDVNNALDILADILQNSTFDQARIT 67 (386)
Q Consensus 2 ~f~Gt~~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~----~~~~l~~~l~~l~~~~~~~~~~~~~~~ 67 (386)
+|.|+-..++.++.+.++.+|+.+..+++...+.+-... ...++..+-+ +-=|.++++.++
T Consensus 17 ViTG~l~~~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~-----lgI~IvsE~~l~ 81 (113)
T 2cok_A 17 LTLGKLSRNKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKE-----ANIRVVSEDFLQ 81 (113)
T ss_dssp EECSCCSSCHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHH-----TTCCEECTHHHH
T ss_pred EEEecCCCCHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHH-----CCCcEEeHHHHH
Confidence 466777678999999999999999999987665443321 2234444433 233556776544
No 45
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=28.25 E-value=77 Score=27.00 Aligned_cols=39 Identities=15% Similarity=0.301 Sum_probs=30.8
Q ss_pred hhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 112 NIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 112 ~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
.+++.+++++++..+.. ..++.+.++|+++++.+.++.+
T Consensus 256 ~LDn~~~~~l~~av~~l--~~~v~ieaSGGIt~~~I~~~a~ 294 (320)
T 3paj_A 256 MLDNFSLEMMREAVKIN--AGRAALENSGNITLDNLKECAE 294 (320)
T ss_dssp EEESCCHHHHHHHHHHH--TTSSEEEEESSCCHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHh--CCCCeEEEECCCCHHHHHHHHH
Confidence 35678889998888763 3578999999999998877764
No 46
>1k8r_B Protein kinase BYR2; signal transduction, cancer, GTPase, ubiquitin fold, signaling protein; HET: GNP; 3.00A {Schizosaccharomyces pombe} SCOP: d.15.1.5 PDB: 1i35_A
Probab=26.98 E-value=32 Score=22.90 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=25.1
Q ss_pred HHHhcCCHHHHHHHHHHhhccCCcEEEEecCCCCCCChHHHHH
Q 016631 337 ARIDSVDASTVKRVANRFIYDRDIAIAAMGPIQGLPDYNWFRR 379 (386)
Q Consensus 337 ~~i~~vt~~dv~~~~~~~l~~~~~~~~i~gp~~~~~~~~~~~~ 379 (386)
..+.-+|.+++..+++..-.|+.-.++++-..+..|.++++++
T Consensus 48 sr~~~it~e~f~~icr~~srPEReRLIl~~K~~p~psfEdlrr 90 (110)
T 1k8r_B 48 SRIKLITEEEFKQICFNSSSPERDRLIIVPKEKPCPSFEDLRR 90 (110)
T ss_dssp SSEEECCCC-------------CCCEEEEESSSCCCCHHHHHH
T ss_pred ceEEEecHhHHHHHHhCCCCcchheeEEecCCCCCCCHHHHHH
Confidence 5677789999999999988888878888888888999999875
No 47
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=25.35 E-value=1.8e+02 Score=20.42 Aligned_cols=54 Identities=9% Similarity=-0.001 Sum_probs=42.2
Q ss_pred eCcccHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhHhhccCchHHHHHH
Q 016631 266 AKPDCLDDLAYAIMYETTKLAYRVSEADVTRARNQLKSSLLLHIDGTSPVAEDI 319 (386)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~l~~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~ 319 (386)
.-.+..++++..|.+.+..+......+.|...-..+..++.....+...+.+++
T Consensus 29 GGkER~~~Ai~II~~Ll~~l~~~~~~~~Lk~vL~~Y~~ELk~~~tSvPfILSRM 82 (118)
T 2zrr_A 29 GGDDRRKKAEVIITELLDDLEIDLGNESLRKVLGSYLKKLKNEGTSVPLVLSRM 82 (118)
T ss_dssp -CCCHHHHHHHHHHHHHHHHCSCSSSHHHHHHHHHHHHHHHHCCSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcCCCCchhHHHHh
Confidence 445788899999999999987656667799999999999888777755555555
No 48
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=24.79 E-value=1.1e+02 Score=23.88 Aligned_cols=39 Identities=8% Similarity=0.193 Sum_probs=32.6
Q ss_pred hhcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 112 NIKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 112 ~l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
.+.-++.+++.+++.+ .|.++.++++|+-.++++.+.++
T Consensus 134 ~~g~l~~~ev~~~l~~--Rp~~~~vIlTGr~ap~~l~e~AD 172 (196)
T 1g5t_A 134 AYDYLPLEEVISALNA--RPGHQTVIITGRGCHRDILDLAD 172 (196)
T ss_dssp HTTSSCHHHHHHHHHT--SCTTCEEEEECSSCCHHHHHHCS
T ss_pred cCCCCCHHHHHHHHHh--CcCCCEEEEECCCCcHHHHHhCc
Confidence 4467899999999986 67899999999999998877753
No 49
>2gqc_A Rhomboid intramembrane protease; alpha-beta domain, hydrolase; NMR {Pseudomonas aeruginosa}
Probab=22.51 E-value=1.4e+02 Score=18.55 Aligned_cols=52 Identities=2% Similarity=-0.032 Sum_probs=36.9
Q ss_pred CChHHHHHHHHhcCCeeeeeecceEEEEEEEeccccHHHHHHHHHHhhcCCCC
Q 016631 9 RTARDLEEEIENMGGHLNAYTSREQTTYYAKVLDKDVNNALDILADILQNSTF 61 (386)
Q Consensus 9 ~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~ 61 (386)
...+.|.++|.+.|+.+...-..+...+-+ ..+++++.+-..+..++.+|.-
T Consensus 13 r~aqaf~dyL~~~~I~~~v~~~~~~~~Lwl-~d~~~~~~a~~el~~F~~~P~~ 64 (70)
T 2gqc_A 13 VDLAGFVGLLRRLNVPHRVSEESGQQVLWV-PDERLAEQVRELYRRYPEGDPQ 64 (70)
T ss_dssp TTGGGHHHHHHTTTCCSEEEEETTEEEEEC-CCSSHHHHHHHHHTTSSSTTTT
T ss_pred HHHHHHHHHHHHCCCcEEEEECCCceEEEE-cCHHHHHHHHHHHHHHHhCCCc
Confidence 346689999999999887776666543322 2234678888888888888763
No 50
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=21.85 E-value=1.8e+02 Score=19.34 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhc--CCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHH-hhCCccCHHHHHHHHhcCCHHHHHHHHH
Q 016631 276 YAIMYETTKLAY--RVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLL-TYGRRIPFAELFARIDSVDASTVKRVAN 352 (386)
Q Consensus 276 ~~~~~~i~~l~~--~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~vt~~dv~~~~~ 352 (386)
+.+-..+..+.. |+++.+++..+.... .+.......+...+. ..|...+...+.+.+..+...++.+-..
T Consensus 22 ~~lg~~Wk~Lar~Lg~~~~~I~~I~~~~~-------~d~~eq~~~mL~~W~~~~g~~At~~~L~~AL~~~~~~~iae~i~ 94 (99)
T 1fad_A 22 DNVGRDWKRLARELKVSEAKMDGIEEKYP-------RSLSERVRESLKVWKNAEKKNASVAGLVKALRTCRLNLVADLVE 94 (99)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHCS-------SCHHHHHHHHHHHHHHHHGGGGSHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhhhHHHHHHHcCCCHHHHHHHHHHCC-------CCHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHCCcHHHHHHHH
Confidence 333444455544 999999988765432 222233333332222 2345556788999999998888887776
Q ss_pred Hhh
Q 016631 353 RFI 355 (386)
Q Consensus 353 ~~l 355 (386)
..+
T Consensus 95 ~~~ 97 (99)
T 1fad_A 95 EAQ 97 (99)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 51
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=21.73 E-value=1.1e+02 Score=25.68 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=29.6
Q ss_pred hcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVKK 153 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~ 153 (386)
+++.+.++++...+. ...++.+.++|.++++.+.++++.
T Consensus 234 ld~~~~e~l~~~v~~--~~~~~~I~ASGGIt~~~i~~~a~~ 272 (296)
T 1qap_A 234 LDNFNTDQMREAVKR--VNGQARLEVSGNVTAETLREFAET 272 (296)
T ss_dssp ESSCCHHHHHHHHHT--TCTTCCEEECCCSCHHHHHHHHHT
T ss_pred ECCCCHHHHHHHHHH--hCCCCeEEEECCCCHHHHHHHHHc
Confidence 456888888888763 334788899999998888877653
No 52
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=21.39 E-value=64 Score=15.64 Aligned_cols=17 Identities=18% Similarity=0.157 Sum_probs=12.9
Q ss_pred HHHhcCCHHHHHHHHHH
Q 016631 337 ARIDSVDASTVKRVANR 353 (386)
Q Consensus 337 ~~i~~vt~~dv~~~~~~ 353 (386)
+..+.+|..||++|+++
T Consensus 6 ~IAe~M~~~~Vk~fvR~ 22 (25)
T 3ewt_E 6 TIAGVMTLSQVKGFVRK 22 (26)
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 44556788899999886
No 53
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=21.37 E-value=58 Score=22.64 Aligned_cols=62 Identities=13% Similarity=0.200 Sum_probs=38.6
Q ss_pred ccccCC-CCChHHHHHHHHhcCCeeeeeecceEEEEEEEec-c-ccHHHHHHHHHHhhcCCCCChHHHHH
Q 016631 2 IFKGTE-KRTARDLEEEIENMGGHLNAYTSREQTTYYAKVL-D-KDVNNALDILADILQNSTFDQARITR 68 (386)
Q Consensus 2 ~f~Gt~-~~~~~~l~~~l~~~g~~~~~~t~~~~~~~~~~~~-~-~~l~~~l~~l~~~~~~~~~~~~~~~~ 68 (386)
+|.|+- .+++.++.+.++.+|+.+..+++.....+-+--. . .++..+.++ -=|.+++++|..
T Consensus 39 v~TG~l~~~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~l-----gI~Ii~E~~f~~ 103 (109)
T 2k6g_A 39 VITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAAL-----GTKIIDEDGLLN 103 (109)
T ss_dssp EEESBCSSCCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHH-----TCEEECHHHHHH
T ss_pred EEeeeCCCCCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHc-----CCeEEeHHHHHH
Confidence 456665 4689999999999999988888765443333211 1 344444432 234466666643
No 54
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=20.89 E-value=97 Score=15.74 Aligned_cols=23 Identities=13% Similarity=0.400 Sum_probs=19.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh
Q 016631 332 FAELFARIDSVDASTVKRVANRF 354 (386)
Q Consensus 332 ~~~~~~~i~~vt~~dv~~~~~~~ 354 (386)
.+++.+.|.++|.-++..+.+.+
T Consensus 3 ~~~iie~i~~lTvlEl~eLvk~l 25 (30)
T 1zav_U 3 IDEIIEAIEKLTVSELAELVKKL 25 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHH
Confidence 35788999999999999888763
No 55
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=20.74 E-value=2.1e+02 Score=19.50 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=44.7
Q ss_pred cCCCHHHHHHHHHHHHHhhHhhccCchHHHHHHHHHHHhhCCccCHHHHHHHHhcCCHHHHHHHHHHhh-------ccCC
Q 016631 287 YRVSEADVTRARNQLKSSLLLHIDGTSPVAEDIGRQLLTYGRRIPFAELFARIDSVDASTVKRVANRFI-------YDRD 359 (386)
Q Consensus 287 ~~~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~~~~~~l-------~~~~ 359 (386)
..+|+++|+.+...+ .....+..++..+...|. +-.++.+.+. +|..-|.+..++.- .|..
T Consensus 3 ~rmT~~eFe~~~~~l---------~~~~~~~~~A~lyYv~g~--tQ~eIA~~lG-iSR~~VsrlL~~Ar~~~~~~~~P~g 70 (101)
T 2w7n_A 3 KRLTESQFQEAIQGL---------EVGQQTIEIARGVLVDGK--PQATFATSLG-LTRGAVSQAVHRVWAAFEDKNLPEG 70 (101)
T ss_dssp CCCCHHHHHHHHTTC---------CCCHHHHHHHHHHHTTCC--CHHHHHHHHT-CCHHHHHHHHHHHHHHHHHTCCCTT
T ss_pred ccCCHHHHHHHHccC---------ChHHHHHHHHHHHHHcCC--CHHHHHHHHC-CCHHHHHHHHHHHHHHHhccCCCCC
Confidence 368999999998665 233444555544333333 4455555555 77777766665422 2333
Q ss_pred -cEEEEecCCCCCCChHHHH
Q 016631 360 -IAIAAMGPIQGLPDYNWFR 378 (386)
Q Consensus 360 -~~~~i~gp~~~~~~~~~~~ 378 (386)
..+.++.|+...+..-.+.
T Consensus 71 ~~rv~v~lP~~~a~~v~~~~ 90 (101)
T 2w7n_A 71 YARVTAVLPEHQAYIVRKWE 90 (101)
T ss_dssp EEEEEEEECHHHHHHHHHHH
T ss_pred eeEEeeecCHHHHHHHHHHH
Confidence 3356777765444444443
No 56
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=20.44 E-value=86 Score=26.23 Aligned_cols=38 Identities=13% Similarity=0.319 Sum_probs=23.7
Q ss_pred hcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
+++.+++++++..+.. ..++.+.++|+++++.+.++.+
T Consensus 224 LDn~~~~~l~~av~~~--~~~v~ieaSGGIt~~~i~~~a~ 261 (287)
T 3tqv_A 224 LDNFSGEDIDIAVSIA--RGKVALEVSGNIDRNSIVAIAK 261 (287)
T ss_dssp EESCCHHHHHHHHHHH--TTTCEEEEESSCCTTTHHHHHT
T ss_pred EcCCCHHHHHHHHHhh--cCCceEEEECCCCHHHHHHHHH
Confidence 4556667776666543 2466777777777776655543
No 57
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.08 E-value=73 Score=22.27 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=27.2
Q ss_pred ccccCC-CCChHHHHHHHHhcCCeeeeeecceEEEE
Q 016631 2 IFKGTE-KRTARDLEEEIENMGGHLNAYTSREQTTY 36 (386)
Q Consensus 2 ~f~Gt~-~~~~~~l~~~l~~~g~~~~~~t~~~~~~~ 36 (386)
+|.|+- .+++.++.+.++.+|+.+..+++.....+
T Consensus 29 v~TG~l~~~~R~e~~~~i~~~Ggkv~~sVSkkTd~L 64 (112)
T 2ebu_A 29 VITGVLESIERDEAKSLIERYGGKVTGNVSKKTNYL 64 (112)
T ss_dssp EECSCCSSSCHHHHHHHHHHTTCEECSSCCSSCCEE
T ss_pred EEeeeCCCCCHHHHHHHHHHcCCEEeccccCCeeEE
Confidence 466776 46899999999999999888887654444
No 58
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=20.04 E-value=88 Score=26.34 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=25.9
Q ss_pred hcccCHHHHHHHHHhhCCCCCeEEEEeCCCCHHHHHHHHH
Q 016631 113 IKTITKEHLQNYIHTHYTAPRMVIAASGAVKHEEVVEQVK 152 (386)
Q Consensus 113 l~~i~~~~l~~~~~~~~~~~~~~l~i~G~~~~~~~~~~~~ 152 (386)
+++++.+++++..+.. ..++.+-++|+++++.+.++.+
T Consensus 233 LDn~s~~~l~~av~~~--~~~v~leaSGGIt~~~i~~~A~ 270 (300)
T 3l0g_A 233 LDNMSISEIKKAVDIV--NGKSVLEVSGCVNIRNVRNIAL 270 (300)
T ss_dssp EESCCHHHHHHHHHHH--TTSSEEEEESSCCTTTHHHHHT
T ss_pred ECCCCHHHHHHHHHhh--cCceEEEEECCCCHHHHHHHHH
Confidence 4667777777777653 2467777788887777766654
Done!