Query 016634
Match_columns 385
No_of_seqs 252 out of 1431
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 08:37:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.7E-53 3.6E-58 429.0 32.9 332 4-381 4-356 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.7E-46 3.6E-51 375.4 25.3 262 102-382 39-316 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 1.8E-41 3.9E-46 344.2 29.1 232 96-360 107-355 (482)
4 cd06096 Plasmepsin_5 Plasmepsi 100.0 9.3E-41 2E-45 325.7 24.9 234 108-358 2-257 (326)
5 cd05478 pepsin_A Pepsin A, asp 100.0 1.2E-40 2.7E-45 323.5 25.3 222 101-360 2-234 (317)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 2.3E-40 5E-45 322.6 24.3 219 104-359 1-233 (325)
7 cd05477 gastricsin Gastricsins 100.0 1E-39 2.3E-44 317.1 25.1 218 107-362 1-231 (318)
8 cd05488 Proteinase_A_fungi Fun 100.0 7.1E-40 1.5E-44 318.6 23.8 220 101-358 2-231 (320)
9 cd05485 Cathepsin_D_like Cathe 100.0 1.1E-39 2.4E-44 318.5 23.9 222 101-359 3-237 (329)
10 cd06098 phytepsin Phytepsin, a 100.0 3.5E-39 7.7E-44 313.4 24.5 217 101-355 2-233 (317)
11 cd05486 Cathespin_E Cathepsin 100.0 2.7E-39 5.9E-44 314.0 22.8 211 110-358 1-224 (316)
12 cd05489 xylanase_inhibitor_I_l 100.0 3.3E-39 7.1E-44 318.5 23.2 239 116-381 2-279 (362)
13 cd06097 Aspergillopepsin_like 100.0 5.5E-39 1.2E-43 306.3 23.2 212 110-358 1-224 (278)
14 cd05472 cnd41_like Chloroplast 100.0 1E-38 2.2E-43 307.6 22.0 209 109-381 1-220 (299)
15 cd05487 renin_like Renin stimu 100.0 2.4E-38 5.2E-43 308.7 24.8 219 103-359 2-234 (326)
16 PTZ00147 plasmepsin-1; Provisi 100.0 8.7E-38 1.9E-42 315.1 26.6 222 96-359 126-359 (453)
17 cd05473 beta_secretase_like Be 100.0 1.7E-37 3.6E-42 307.2 24.5 233 108-380 2-261 (364)
18 PTZ00013 plasmepsin 4 (PM4); P 100.0 2.6E-36 5.6E-41 303.9 29.0 220 97-358 126-357 (450)
19 cd05475 nucellin_like Nucellin 100.0 7.2E-37 1.6E-41 291.2 22.0 190 109-351 2-196 (273)
20 cd05471 pepsin_like Pepsin-lik 100.0 5E-36 1.1E-40 284.8 24.6 218 110-364 1-234 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 2.3E-34 4.9E-39 272.7 18.9 178 109-351 1-195 (265)
22 PF00026 Asp: Eukaryotic aspar 100.0 3.4E-33 7.3E-38 270.0 18.1 217 109-363 1-230 (317)
23 cd05474 SAP_like SAPs, pepsin- 100.0 1.2E-32 2.5E-37 264.4 21.4 197 109-380 2-222 (295)
24 PF14543 TAXi_N: Xylanase inhi 100.0 1E-32 2.2E-37 243.1 14.5 157 110-293 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 4.6E-23 9.9E-28 168.9 12.9 107 112-256 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.1 7E-11 1.5E-15 103.7 6.9 70 313-382 1-82 (161)
27 cd05483 retropepsin_like_bacte 97.6 0.00029 6.2E-09 55.3 8.1 92 109-258 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 95.0 0.3 6.4E-06 40.6 10.0 35 102-138 4-38 (121)
29 PF13650 Asp_protease_2: Aspar 93.9 0.67 1.4E-05 35.4 9.2 24 113-138 2-25 (90)
30 cd05479 RP_DDI RP_DDI; retrope 93.3 0.94 2E-05 37.7 9.8 31 107-139 14-44 (124)
31 cd05484 retropepsin_like_LTR_2 90.3 0.35 7.6E-06 37.7 3.6 27 110-138 1-27 (91)
32 PF13650 Asp_protease_2: Aspar 87.5 0.71 1.5E-05 35.2 3.5 29 321-354 3-31 (90)
33 TIGR02281 clan_AA_DTGA clan AA 86.6 1.5 3.3E-05 36.3 5.3 35 312-354 10-44 (121)
34 PF13975 gag-asp_proteas: gag- 84.4 1.6 3.4E-05 32.6 4.0 29 321-354 13-41 (72)
35 cd05484 retropepsin_like_LTR_2 83.9 1.4 3.1E-05 34.2 3.7 31 320-355 4-34 (91)
36 cd05483 retropepsin_like_bacte 80.4 3 6.5E-05 32.0 4.4 30 320-354 6-35 (96)
37 PF13975 gag-asp_proteas: gag- 80.2 3.7 8.1E-05 30.5 4.6 31 107-139 6-36 (72)
38 PF00077 RVP: Retroviral aspar 79.3 3.1 6.7E-05 32.7 4.1 26 111-138 7-32 (100)
39 cd06095 RP_RTVL_H_like Retrope 71.5 4.8 0.0001 31.0 3.3 29 321-354 3-31 (86)
40 cd05479 RP_DDI RP_DDI; retrope 70.8 5.1 0.00011 33.2 3.5 29 321-354 21-49 (124)
41 cd05482 HIV_retropepsin_like R 69.0 7 0.00015 30.5 3.6 23 114-138 3-25 (87)
42 PF00077 RVP: Retroviral aspar 66.4 4.2 9.1E-05 31.9 2.0 27 320-351 9-35 (100)
43 COG3577 Predicted aspartyl pro 60.7 48 0.001 30.2 7.7 85 93-219 89-173 (215)
44 cd05481 retropepsin_like_LTR_1 59.2 10 0.00022 29.8 2.9 31 321-355 3-33 (93)
45 cd06095 RP_RTVL_H_like Retrope 58.8 13 0.00028 28.5 3.5 23 114-138 3-25 (86)
46 PF09668 Asp_protease: Asparty 57.4 12 0.00026 31.3 3.2 29 321-354 29-57 (124)
47 COG3577 Predicted aspartyl pro 53.1 33 0.00071 31.2 5.4 34 312-353 104-137 (215)
48 COG5550 Predicted aspartyl pro 45.2 13 0.00029 30.9 1.6 20 335-354 29-49 (125)
49 PF11925 DUF3443: Protein of u 44.9 1.3E+02 0.0029 29.8 8.7 136 197-350 83-273 (370)
50 PF09668 Asp_protease: Asparty 44.7 19 0.0004 30.1 2.4 35 108-144 23-58 (124)
51 TIGR03698 clan_AA_DTGF clan AA 41.1 18 0.00039 29.2 1.8 23 332-354 16-39 (107)
52 PF12384 Peptidase_A2B: Ty3 tr 37.9 40 0.00087 29.6 3.5 27 112-138 35-61 (177)
53 cd00303 retropepsin_like Retro 31.1 89 0.0019 21.8 4.2 21 334-354 11-31 (92)
54 PF08284 RVP_2: Retroviral asp 28.8 1.5E+02 0.0032 24.9 5.5 20 334-353 34-53 (135)
55 cd05480 NRIP_C NRIP_C; putativ 22.5 1.2E+02 0.0025 24.5 3.4 29 321-354 3-31 (103)
56 cd06097 Aspergillopepsin_like 22.0 80 0.0017 29.6 3.0 28 320-350 4-31 (278)
57 TIGR03698 clan_AA_DTGF clan AA 21.4 1.3E+02 0.0027 24.2 3.6 27 112-138 2-33 (107)
58 cd06096 Plasmepsin_5 Plasmepsi 21.1 74 0.0016 30.7 2.6 30 318-350 5-34 (326)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.7e-53 Score=429.00 Aligned_cols=332 Identities=25% Similarity=0.460 Sum_probs=246.6
Q ss_pred HHHHHHHHH-HHhhcccccccceEEEEeecChhhHhhhhccCCCCccCCCCCCCCcHHHHHHHhhchhhhhhhhhhhhcC
Q 016634 4 LVAICMLFG-CILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWKRQKTRVKLQSN 82 (385)
Q Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~~~~l~hr~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 82 (385)
|++++|+.. .+....+...+++++|+||+++++| +++ +.....+.++++++++.+|.+......
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp---------~~~----~~~~~~~~~~~~~~~~~~r~~~~~~~~-- 68 (431)
T PLN03146 4 LLALCLFSFSELSAAEAPKGGFTVDLIHRDSPKSP---------FYN----PSETPSQRLRNAFRRSISRVNHFRPTD-- 68 (431)
T ss_pred hHHHHHHHHhhhhhccccCCceEEEEEeCCCCCCC---------CCC----CCCChhHHHHHHHHHHHHHHHHHhhcc--
Confidence 344444433 2333556778999999999999865 322 222345666666666665554432210
Q ss_pred CCCCCccccccCCCCceeEeccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCC
Q 016634 83 NNSSRNQLLFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEY 161 (385)
Q Consensus 83 ~~~~~~~~~~~~~g~~~~~~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f 161 (385)
.... +.. .++ ...+..|+++|.||||||++.|++||||+++||+|. |..|..+. .+.|
T Consensus 69 ---~~~~---~~~----~~~-~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~----------~~~f 127 (431)
T PLN03146 69 ---ASPN---DPQ----SDL-ISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV----------SPLF 127 (431)
T ss_pred ---ccCC---ccc----cCc-ccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC----------CCcc
Confidence 0000 000 011 122457999999999999999999999999999998 88887654 4789
Q ss_pred CCCCCCCCccccCCCcCCCCCC---CCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEE
Q 016634 162 DPSSSSSSKNVSCSHPLCKSRS---SCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGR 238 (385)
Q Consensus 162 ~ps~SsT~~~v~C~~~~C~~~~---~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~ 238 (385)
||++|+||+.++|+++.|+... .|... +.|.|.+.|+|| +.+.|.+++|+|+|++..+.. ...+++.|||++
T Consensus 128 dps~SST~~~~~C~s~~C~~~~~~~~c~~~-~~c~y~i~Ygdg-s~~~G~l~~Dtltlg~~~~~~---~~v~~~~FGc~~ 202 (431)
T PLN03146 128 DPKKSSTYKDVSCDSSQCQALGNQASCSDE-NTCTYSYSYGDG-SFTKGNLAVETLTIGSTSGRP---VSFPGIVFGCGH 202 (431)
T ss_pred cCCCCCCCcccCCCCcccccCCCCCCCCCC-CCCeeEEEeCCC-CceeeEEEEEEEEeccCCCCc---ceeCCEEEeCCC
Confidence 9999999999999999998642 37543 469999999996 678999999999998753211 246899999999
Q ss_pred eccCCCCCCCCCCeeeecCCCCCChHHHHHHcCCCCCceEEeecC-----CCcceEEEcccCCCC---ceeeeeeecCCC
Q 016634 239 KQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE-----NDSGSVFFGDQGPAT---QQSTSFLPIGEK 310 (385)
Q Consensus 239 ~~~g~~~~~~~~dGIlGLg~~~~S~~~~l~~~g~i~~~FS~cl~~-----~~~G~l~fG~~d~~~---~~~tp~v~~~~~ 310 (385)
.+.|.|.. ..+||||||++.+|+++||... +.++|||||.+ ...|.|+||+..... ..+||+++...
T Consensus 203 ~~~g~f~~--~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~- 277 (431)
T PLN03146 203 NNGGTFDE--KGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP- 277 (431)
T ss_pred CCCCCccC--CCceeEecCCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-
Confidence 88776532 4699999999999999999753 56699999964 236999999853221 34678775433
Q ss_pred CccEEEeEeEEEEcCeEeecCC--------ceEEEcCcccccccCHHHHHHHHHHHHHhhccccccccccccccccccc
Q 016634 311 YDAYFVGVESYCIGNSCLTQSG--------FQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNAR 381 (385)
Q Consensus 311 ~~~y~v~l~~isVg~~~~~~~~--------~~~iiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~s 381 (385)
+.+|+|+|++|+||++.+.... ..+||||||++|+||+++|++|.++|.++++..+.......+++||+..
T Consensus 278 ~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~ 356 (431)
T PLN03146 278 DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSST 356 (431)
T ss_pred CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCC
Confidence 3799999999999999875321 3699999999999999999999999999998765544444578999853
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-46 Score=375.40 Aligned_cols=262 Identities=35% Similarity=0.604 Sum_probs=212.8
Q ss_pred eccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecC-CC-CCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCC
Q 016634 102 FGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CI-QCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLC 179 (385)
Q Consensus 102 ~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~-~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C 179 (385)
+....+.+||++|.||||||.|.|++||||+++||+|. |. .|..+. .+.|+|++||||+.+.|+++.|
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~----------~~~f~p~~SSt~~~~~c~~~~c 108 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQH----------NPIFDPSASSTYKSVGCSSPRC 108 (398)
T ss_pred cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccC----------CCccCccccccccccCCCCccc
Confidence 33455668999999999999999999999999999998 88 686542 2459999999999999999999
Q ss_pred CCCCCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCC-CCCCeeeecCC
Q 016634 180 KSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDG-AAPDGVMGLGL 258 (385)
Q Consensus 180 ~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~-~~~dGIlGLg~ 258 (385)
.....|...++.|.|.+.|+|| ++++|.+++|+|++++.+. ...+++.|||+..+.+. +.. .+.|||||||+
T Consensus 109 ~~~~~~~~~~~~C~y~i~Ygd~-~~~~G~l~~Dtv~~~~~~~-----~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~ 181 (398)
T KOG1339|consen 109 KSLPQSCSPNSSCPYSIQYGDG-SSTSGYLATDTVTFGGTTS-----LPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGR 181 (398)
T ss_pred cccccCcccCCcCceEEEeCCC-CceeEEEEEEEEEEccccc-----cccccEEEEeeecCccc-cccccccceEeecCC
Confidence 9876555556789999999995 6899999999999998530 24578999999999876 332 57899999999
Q ss_pred CCCChHHHHHHcCCCCCceEEeecCC-----CcceEEEcccCCCC-ceeeeeeecCCCC-ccEEEeEeEEEEcCeE----
Q 016634 259 GDVSVPSLLAKAGLIQNSFSICFDEN-----DSGSVFFGDQGPAT-QQSTSFLPIGEKY-DAYFVGVESYCIGNSC---- 327 (385)
Q Consensus 259 ~~~S~~~~l~~~g~i~~~FS~cl~~~-----~~G~l~fG~~d~~~-~~~tp~v~~~~~~-~~y~v~l~~isVg~~~---- 327 (385)
+.+|+++|+...+...++|||||.++ .+|.|.||+.|..+ .+.+.|+|+.... .+|+|+|++|+||++.
T Consensus 182 ~~~S~~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~ 261 (398)
T KOG1339|consen 182 GSLSVPSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGS 261 (398)
T ss_pred CCccceeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCc
Confidence 99999999987766667999999876 37999999999986 4445555554442 3999999999999843
Q ss_pred --eecCCceEEEcCcccccccCHHHHHHHHHHHHHhhcccccccccccccccccccc
Q 016634 328 --LTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNARL 382 (385)
Q Consensus 328 --~~~~~~~~iiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~s~ 382 (385)
......++||||||++|+||+++|++|.++|...+.. ......+++.||+.+.
T Consensus 262 ~~~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~ 316 (398)
T KOG1339|consen 262 SLFCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSIST 316 (398)
T ss_pred ceEecCCCCEEEECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCC
Confidence 2223578999999999999999999999999888611 2122245779998764
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=1.8e-41 Score=344.23 Aligned_cols=232 Identities=22% Similarity=0.366 Sum_probs=191.3
Q ss_pred CCceeEeccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCC
Q 016634 96 GSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCS 175 (385)
Q Consensus 96 g~~~~~~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~ 175 (385)
+....++.|+.+.+||++|.||||||+|.|++||||+++||+|. .|....|. .++.|||++|+||+.+.+.
T Consensus 107 ~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~--~C~~~~C~-------~~~~yd~s~SSTy~~~~~~ 177 (482)
T PTZ00165 107 QYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK--ECKSGGCA-------PHRKFDPKKSSTYTKLKLG 177 (482)
T ss_pred cccceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch--hcCccccc-------ccCCCCccccCCcEecCCC
Confidence 34678899999999999999999999999999999999999995 44333332 3578999999999985321
Q ss_pred CcCCCCCCCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeee
Q 016634 176 HPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMG 255 (385)
Q Consensus 176 ~~~C~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlG 255 (385)
. ....+.++|++| +..|.+++|+|+|++. .++++.|||++.+++..+...+.|||||
T Consensus 178 ~-------------~~~~~~i~YGsG--s~~G~l~~DtV~ig~l--------~i~~q~FG~a~~~s~~~f~~~~~DGILG 234 (482)
T PTZ00165 178 D-------------ESAETYIQYGTG--ECVLALGKDTVKIGGL--------KVKHQSIGLAIEESLHPFADLPFDGLVG 234 (482)
T ss_pred C-------------ccceEEEEeCCC--cEEEEEEEEEEEECCE--------EEccEEEEEEEeccccccccccccceee
Confidence 1 112577999997 6789999999999885 5789999999988765445557899999
Q ss_pred cCCCCC---------ChHHHHHHcCCC-CCceEEeecCC--CcceEEEcccCCCCc---eeeeeeecCCCCccEEEeEeE
Q 016634 256 LGLGDV---------SVPSLLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPATQ---QSTSFLPIGEKYDAYFVGVES 320 (385)
Q Consensus 256 Lg~~~~---------S~~~~l~~~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~~~---~~tp~v~~~~~~~~y~v~l~~ 320 (385)
||++.+ ++..+|++||++ +++||+||.++ .+|.|+||++|+.+. +.+.|+|+... .+|+|.+++
T Consensus 235 Lg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~-~yW~i~l~~ 313 (482)
T PTZ00165 235 LGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST-DYWEIEVVD 313 (482)
T ss_pred cCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc-ceEEEEeCe
Confidence 999875 235569999999 79999999753 469999999998653 47899998775 899999999
Q ss_pred EEEcCeEee--cCCceEEEcCcccccccCHHHHHHHHHHHHH
Q 016634 321 YCIGNSCLT--QSGFQALVDSGASFTFLPTEIYAEVVVKFDK 360 (385)
Q Consensus 321 isVg~~~~~--~~~~~~iiDSGTs~t~Lp~~~y~~l~~~~~~ 360 (385)
|+||++.+. ...+.+||||||+++++|+++|++|.+++..
T Consensus 314 i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~ 355 (482)
T PTZ00165 314 ILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPL 355 (482)
T ss_pred EEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCC
Confidence 999998764 3567899999999999999999888777643
No 4
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=9.3e-41 Score=325.68 Aligned_cols=234 Identities=27% Similarity=0.485 Sum_probs=189.5
Q ss_pred cEEEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCC
Q 016634 108 WLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCK 186 (385)
Q Consensus 108 ~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~ 186 (385)
.+||++|.||||+|+|.|+|||||+++||+|. |..|..+. .+.|+|++|+|++.++|++..|.....|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~----------~~~y~~~~Sst~~~~~C~~~~c~~~~~~~ 71 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM----------EPPYNLNNSITSSILYCDCNKCCYCLSCL 71 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC----------CCCcCcccccccccccCCCccccccCcCC
Confidence 37999999999999999999999999999998 88886443 37899999999999999999997655564
Q ss_pred CCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCC-h--
Q 016634 187 SLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS-V-- 263 (385)
Q Consensus 187 ~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S-~-- 263 (385)
. +.|.|.+.|++| +.+.|.+++|+|+|++..... .......+.|||+..+.+.+... ..|||||||+...+ .
T Consensus 72 ~--~~~~~~i~Y~~g-s~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~~~-~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 72 N--NKCEYSISYSEG-SSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFLTQ-QATGILGLSLTKNNGLPT 146 (326)
T ss_pred C--CcCcEEEEECCC-CceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCccccc-ccceEEEccCCcccccCc
Confidence 4 569999999996 678999999999998763210 00123468999999887766443 56999999998753 2
Q ss_pred HH-HHHHcCCC-C--CceEEeecCCCcceEEEcccCCCCc-----------eeeeeeecCCCCccEEEeEeEEEEcCeE-
Q 016634 264 PS-LLAKAGLI-Q--NSFSICFDENDSGSVFFGDQGPATQ-----------QSTSFLPIGEKYDAYFVGVESYCIGNSC- 327 (385)
Q Consensus 264 ~~-~l~~~g~i-~--~~FS~cl~~~~~G~l~fG~~d~~~~-----------~~tp~v~~~~~~~~y~v~l~~isVg~~~- 327 (385)
+. +|.+++.+ . ++||+||+++ .|.|+||++|+.+. +.+.|+|+... .+|.|++++|+||++.
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~-~~y~v~l~~i~vg~~~~ 224 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK-YYYYVKLEGLSVYGTTS 224 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCC-ceEEEEEEEEEEccccc
Confidence 22 24455554 3 8999999974 79999999998653 46778887765 7999999999999985
Q ss_pred --eecCCceEEEcCcccccccCHHHHHHHHHHH
Q 016634 328 --LTQSGFQALVDSGASFTFLPTEIYAEVVVKF 358 (385)
Q Consensus 328 --~~~~~~~~iiDSGTs~t~Lp~~~y~~l~~~~ 358 (385)
.......+||||||++++||+++|++|.+++
T Consensus 225 ~~~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~ 257 (326)
T cd06096 225 NSGNTKGLGMLVDSGSTLSHFPEDLYNKINNFF 257 (326)
T ss_pred ceecccCCCEEEeCCCCcccCCHHHHHHHHhhc
Confidence 2335678999999999999999999998877
No 5
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.2e-40 Score=323.53 Aligned_cols=222 Identities=28% Similarity=0.469 Sum_probs=188.1
Q ss_pred EeccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCC
Q 016634 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCK 180 (385)
Q Consensus 101 ~~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~ 180 (385)
|+.|+.+.+||++|.||||+|++.|++||||+++||+|. .|....|. .++.|+|++|+|++..
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~--~C~~~~c~-------~~~~f~~~~Sst~~~~-------- 64 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV--YCSSQACS-------NHNRFNPRQSSTYQST-------- 64 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC--CCCccccc-------ccCcCCCCCCcceeeC--------
Confidence 577888999999999999999999999999999999995 33332321 3578999999999974
Q ss_pred CCCCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCC
Q 016634 181 SRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD 260 (385)
Q Consensus 181 ~~~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~ 260 (385)
.|.|.+.|++| ++.|.+++|+|+|++. ..+++.|||++.+.+.+......|||||||++.
T Consensus 65 ----------~~~~~~~yg~g--s~~G~~~~D~v~ig~~--------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~ 124 (317)
T cd05478 65 ----------GQPLSIQYGTG--SMTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPS 124 (317)
T ss_pred ----------CcEEEEEECCc--eEEEEEeeeEEEECCE--------EECCEEEEEEEecCccccccccccceeeeccch
Confidence 48999999997 5799999999999885 568899999998877655444579999999976
Q ss_pred CC------hHHHHHHcCCC-CCceEEeecCCC--cceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCeEeec
Q 016634 261 VS------VPSLLAKAGLI-QNSFSICFDEND--SGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ 330 (385)
Q Consensus 261 ~S------~~~~l~~~g~i-~~~FS~cl~~~~--~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~~~~~ 330 (385)
++ +..+|+++|+| +++||+||.++. .|.|+||++|+.+ .+.+.|+|+... .+|.|.+++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~-~~w~v~l~~v~v~g~~~~~ 203 (317)
T cd05478 125 IASSGATPVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE-TYWQITVDSVTINGQVVAC 203 (317)
T ss_pred hcccCCCCHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC-cEEEEEeeEEEECCEEEcc
Confidence 43 57789999999 799999998763 6899999999876 578888887664 8999999999999998853
Q ss_pred -CCceEEEcCcccccccCHHHHHHHHHHHHH
Q 016634 331 -SGFQALVDSGASFTFLPTEIYAEVVVKFDK 360 (385)
Q Consensus 331 -~~~~~iiDSGTs~t~Lp~~~y~~l~~~~~~ 360 (385)
.+..+||||||++++||+++|++|.+++..
T Consensus 204 ~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~ 234 (317)
T cd05478 204 SGGCQAIVDTGTSLLVGPSSDIANIQSDIGA 234 (317)
T ss_pred CCCCEEEECCCchhhhCCHHHHHHHHHHhCC
Confidence 456899999999999999999998877643
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.3e-40 Score=322.63 Aligned_cols=219 Identities=26% Similarity=0.423 Sum_probs=181.6
Q ss_pred cccccEEEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCC
Q 016634 104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSR 182 (385)
Q Consensus 104 ~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~ 182 (385)
|+.+.+||++|.||||||+|.|++||||+++||+|. |..|. ..| ..++.|+|++|+|++.
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~C-------~~~~~y~~~~SsT~~~----------- 61 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLD-IAC-------WLHHKYNSSKSSTYVK----------- 61 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCC-ccc-------cCcCcCCcccCcceee-----------
Confidence 466889999999999999999999999999999996 65321 122 2357899999999987
Q ss_pred CCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCC
Q 016634 183 SSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVS 262 (385)
Q Consensus 183 ~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S 262 (385)
..|.|.+.|++| ++.|.+++|+|+|++. ..+++.|||++.+.+..+.....|||||||++..+
T Consensus 62 -------~~~~~~i~Yg~G--~~~G~~~~D~v~~g~~--------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s 124 (325)
T cd05490 62 -------NGTEFAIQYGSG--SLSGYLSQDTVSIGGL--------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRIS 124 (325)
T ss_pred -------CCcEEEEEECCc--EEEEEEeeeEEEECCE--------EEcCEEEEEEeeccCCcccceeeeEEEecCCcccc
Confidence 248999999997 5799999999999875 56889999999887643333467999999998765
Q ss_pred h------HHHHHHcCCC-CCceEEeecCC----CcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCeEee-
Q 016634 263 V------PSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSCLT- 329 (385)
Q Consensus 263 ~------~~~l~~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~~~~- 329 (385)
. ..+|+++|++ +++||+||.++ ..|.|+||++|+.+ .+++.|+++... .+|.|+|++|+||++...
T Consensus 125 ~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~-~~w~v~l~~i~vg~~~~~~ 203 (325)
T cd05490 125 VDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK-AYWQIHMDQVDVGSGLTLC 203 (325)
T ss_pred ccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc-eEEEEEeeEEEECCeeeec
Confidence 4 4578999998 79999999863 36999999999876 468888887664 799999999999987543
Q ss_pred cCCceEEEcCcccccccCHHHHHHHHHHHH
Q 016634 330 QSGFQALVDSGASFTFLPTEIYAEVVVKFD 359 (385)
Q Consensus 330 ~~~~~~iiDSGTs~t~Lp~~~y~~l~~~~~ 359 (385)
.....+||||||+++++|+++|++|.+++.
T Consensus 204 ~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~ 233 (325)
T cd05490 204 KGGCEAIVDTGTSLITGPVEEVRALQKAIG 233 (325)
T ss_pred CCCCEEEECCCCccccCCHHHHHHHHHHhC
Confidence 345689999999999999999998887764
No 7
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1e-39 Score=317.12 Aligned_cols=218 Identities=23% Similarity=0.428 Sum_probs=182.2
Q ss_pred ccEEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCC
Q 016634 107 YWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCK 186 (385)
Q Consensus 107 ~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~ 186 (385)
|..|+++|.||||||++.|++||||+++||+|. .|..+.|. .++.|||++|+|++.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~--~C~~~~C~-------~~~~f~~~~SsT~~~--------------- 56 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV--LCQSQACT-------NHTKFNPSQSSTYST--------------- 56 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC--CCCCcccc-------ccCCCCcccCCCceE---------------
Confidence 467999999999999999999999999999995 44433332 357899999999997
Q ss_pred CCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCC------
Q 016634 187 SLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD------ 260 (385)
Q Consensus 187 ~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~------ 260 (385)
..|.|++.|++| ++.|.+++|+|+|++. ..+++.|||++...+..+...+.+||||||++.
T Consensus 57 ---~~~~~~~~Yg~G--s~~G~~~~D~i~~g~~--------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 123 (318)
T cd05477 57 ---NGETFSLQYGSG--SLTGIFGYDTVTVQGI--------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGA 123 (318)
T ss_pred ---CCcEEEEEECCc--EEEEEEEeeEEEECCE--------EEcCEEEEEEEecccccccccceeeEeecCcccccccCC
Confidence 359999999997 5799999999999875 568999999998765433334569999999864
Q ss_pred CChHHHHHHcCCC-CCceEEeecCC---CcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCeEee--cCCc
Q 016634 261 VSVPSLLAKAGLI-QNSFSICFDEN---DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSCLT--QSGF 333 (385)
Q Consensus 261 ~S~~~~l~~~g~i-~~~FS~cl~~~---~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~~~~--~~~~ 333 (385)
.+++.+|+++|.| +++||+||.++ ..|.|+||++|+.+ .+.+.|+|+... .+|.|.|++|+||++.+. ..+.
T Consensus 124 ~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~-~~w~v~l~~i~v~g~~~~~~~~~~ 202 (318)
T cd05477 124 TTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE-TYWQIGIQGFQINGQATGWCSQGC 202 (318)
T ss_pred CCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc-eEEEEEeeEEEECCEEecccCCCc
Confidence 4567889999999 89999999864 46999999999876 467888887765 899999999999999764 3456
Q ss_pred eEEEcCcccccccCHHHHHHHHHHHHHhh
Q 016634 334 QALVDSGASFTFLPTEIYAEVVVKFDKLV 362 (385)
Q Consensus 334 ~~iiDSGTs~t~Lp~~~y~~l~~~~~~~~ 362 (385)
.+||||||++++||+++|++|++++..+.
T Consensus 203 ~~iiDSGtt~~~lP~~~~~~l~~~~~~~~ 231 (318)
T cd05477 203 QAIVDTGTSLLTAPQQVMSTLMQSIGAQQ 231 (318)
T ss_pred eeeECCCCccEECCHHHHHHHHHHhCCcc
Confidence 79999999999999999999988875543
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=7.1e-40 Score=318.64 Aligned_cols=220 Identities=26% Similarity=0.429 Sum_probs=185.3
Q ss_pred EeccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCC
Q 016634 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCK 180 (385)
Q Consensus 101 ~~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~ 180 (385)
++.|+.+.+||++|.||||+|+|.|++||||+++||+|. .|....|. .++.|+|++|+|++.
T Consensus 2 ~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~--~C~~~~C~-------~~~~y~~~~Sst~~~--------- 63 (320)
T cd05488 2 PLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV--KCGSIACF-------LHSKYDSSASSTYKA--------- 63 (320)
T ss_pred cccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC--CCCCcccC-------CcceECCCCCcceee---------
Confidence 567888899999999999999999999999999999995 44333332 246899999999987
Q ss_pred CCCCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCC
Q 016634 181 SRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD 260 (385)
Q Consensus 181 ~~~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~ 260 (385)
+.|.|.+.|++| +++|.+++|+|+|++. ..+++.|||+..+.+..+.....|||||||++.
T Consensus 64 ---------~~~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~ 124 (320)
T cd05488 64 ---------NGTEFKIQYGSG--SLEGFVSQDTLSIGDL--------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDT 124 (320)
T ss_pred ---------CCCEEEEEECCc--eEEEEEEEeEEEECCE--------EECCEEEEEEecCCCcceeeeeeceEEecCCcc
Confidence 459999999997 5799999999999875 457899999988766544444679999999988
Q ss_pred CChH------HHHHHcCCC-CCceEEeecCC--CcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCeEeec
Q 016634 261 VSVP------SLLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQ 330 (385)
Q Consensus 261 ~S~~------~~l~~~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~~~~~ 330 (385)
.+.+ .+|+++|+| +++||+||.++ ..|.|+||++|+.+ .+.+.|+|.... .+|.|++++|+||++.+..
T Consensus 125 ~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-~~w~v~l~~i~vg~~~~~~ 203 (320)
T cd05488 125 ISVNKIVPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK-AYWEVELEKIGLGDEELEL 203 (320)
T ss_pred ccccCCCCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC-cEEEEEeCeEEECCEEecc
Confidence 7653 358899999 79999999874 57999999999876 467888887654 7999999999999998876
Q ss_pred CCceEEEcCcccccccCHHHHHHHHHHH
Q 016634 331 SGFQALVDSGASFTFLPTEIYAEVVVKF 358 (385)
Q Consensus 331 ~~~~~iiDSGTs~t~Lp~~~y~~l~~~~ 358 (385)
....++|||||++++||++++++|.+++
T Consensus 204 ~~~~~ivDSGtt~~~lp~~~~~~l~~~~ 231 (320)
T cd05488 204 ENTGAAIDTGTSLIALPSDLAEMLNAEI 231 (320)
T ss_pred CCCeEEEcCCcccccCCHHHHHHHHHHh
Confidence 6678999999999999999988876665
No 9
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.1e-39 Score=318.47 Aligned_cols=222 Identities=25% Similarity=0.427 Sum_probs=185.9
Q ss_pred EeccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCC
Q 016634 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLC 179 (385)
Q Consensus 101 ~~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C 179 (385)
++.|+.+.+||++|.||||+|++.|++||||+++||+|. |..|. ..| ..++.|+|++|+|++..
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~c-------~~~~~y~~~~Sst~~~~------- 67 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTN-IAC-------LLHNKYDSTKSSTYKKN------- 67 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCC-ccc-------cCCCeECCcCCCCeEEC-------
Confidence 567899999999999999999999999999999999996 65332 112 12478999999999973
Q ss_pred CCCCCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCC
Q 016634 180 KSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG 259 (385)
Q Consensus 180 ~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~ 259 (385)
.|.|.+.|++| ++.|.+++|+++|++. ..+++.|||+.++.+..+...+.+||||||++
T Consensus 68 -----------~~~~~i~Y~~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~ 126 (329)
T cd05485 68 -----------GTEFAIQYGSG--SLSGFLSTDTVSVGGV--------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYS 126 (329)
T ss_pred -----------CeEEEEEECCc--eEEEEEecCcEEECCE--------EECCEEEEEEEecCCccccccccceEEEcCCc
Confidence 58999999997 5899999999999875 45789999998876643333467999999998
Q ss_pred CCCh------HHHHHHcCCC-CCceEEeecCC----CcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCeE
Q 016634 260 DVSV------PSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSC 327 (385)
Q Consensus 260 ~~S~------~~~l~~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~~ 327 (385)
..+. ..+|++||+| ++.||+||.++ ..|.|+||++|+.+ .+.+.|+|+... .+|.|.+++|+||++.
T Consensus 127 ~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~-~~~~v~~~~i~v~~~~ 205 (329)
T cd05485 127 SISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK-GYWQFKMDSVSVGEGE 205 (329)
T ss_pred cccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc-eEEEEEeeEEEECCee
Confidence 7764 4679999999 79999999864 35999999999876 467778887654 8999999999999998
Q ss_pred eecCCceEEEcCcccccccCHHHHHHHHHHHH
Q 016634 328 LTQSGFQALVDSGASFTFLPTEIYAEVVVKFD 359 (385)
Q Consensus 328 ~~~~~~~~iiDSGTs~t~Lp~~~y~~l~~~~~ 359 (385)
+......+||||||++++||+++|++|.+++.
T Consensus 206 ~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~ 237 (329)
T cd05485 206 FCSGGCQAIADTGTSLIAGPVDEIEKLNNAIG 237 (329)
T ss_pred ecCCCcEEEEccCCcceeCCHHHHHHHHHHhC
Confidence 86566789999999999999999988876654
No 10
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=3.5e-39 Score=313.37 Aligned_cols=217 Identities=28% Similarity=0.442 Sum_probs=179.8
Q ss_pred EeccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCC-CCcccccccCCCCCCCCCCCCCCCccccCCCcCC
Q 016634 101 FFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAP-LSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLC 179 (385)
Q Consensus 101 ~~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~-~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C 179 (385)
++.|+.+.+||++|.||||||+|.|++||||+++||+|. .|.. ..| ..++.|+|++|+|++..
T Consensus 2 ~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~--~C~~~~~C-------~~~~~y~~~~SsT~~~~------- 65 (317)
T cd06098 2 ALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS--KCYFSIAC-------YFHSKYKSSKSSTYKKN------- 65 (317)
T ss_pred cccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecC--CCCCCccc-------cccCcCCcccCCCcccC-------
Confidence 567888999999999999999999999999999999995 3421 122 13578999999999873
Q ss_pred CCCCCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCC
Q 016634 180 KSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG 259 (385)
Q Consensus 180 ~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~ 259 (385)
.+.+.+.|++| ++.|.+++|+|+|++. ..+++.|||++.+.+..+.....|||||||++
T Consensus 66 -----------~~~~~i~Yg~G--~~~G~~~~D~v~ig~~--------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~ 124 (317)
T cd06098 66 -----------GTSASIQYGTG--SISGFFSQDSVTVGDL--------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQ 124 (317)
T ss_pred -----------CCEEEEEcCCc--eEEEEEEeeEEEECCE--------EECCEEEEEEEecCCccccccccceecccccc
Confidence 47889999997 5799999999999875 56899999998876543333467999999998
Q ss_pred CCCh------HHHHHHcCCC-CCceEEeecCC----CcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCeE
Q 016634 260 DVSV------PSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSC 327 (385)
Q Consensus 260 ~~S~------~~~l~~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~~ 327 (385)
..+. ..+|+++|++ +++||+||.++ ..|.|+||++|+.+ .+++.|+|+... .+|.|.+++|+||++.
T Consensus 125 ~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~-~~w~v~l~~i~v~g~~ 203 (317)
T cd06098 125 EISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK-GYWQFEMGDVLIGGKS 203 (317)
T ss_pred chhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC-cEEEEEeCeEEECCEE
Confidence 7654 4568999998 78999999753 46999999999886 568888888665 7999999999999987
Q ss_pred ee--cCCceEEEcCcccccccCHHHHHHHH
Q 016634 328 LT--QSGFQALVDSGASFTFLPTEIYAEVV 355 (385)
Q Consensus 328 ~~--~~~~~~iiDSGTs~t~Lp~~~y~~l~ 355 (385)
+. .....+||||||++++||++++++|.
T Consensus 204 ~~~~~~~~~aivDTGTs~~~lP~~~~~~i~ 233 (317)
T cd06098 204 TGFCAGGCAAIADSGTSLLAGPTTIVTQIN 233 (317)
T ss_pred eeecCCCcEEEEecCCcceeCCHHHHHhhh
Confidence 64 34567999999999999999887664
No 11
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=2.7e-39 Score=314.01 Aligned_cols=211 Identities=23% Similarity=0.412 Sum_probs=177.3
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCC
Q 016634 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLK 189 (385)
Q Consensus 110 y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~~~~ 189 (385)
||++|.||||||+|.|+|||||+++||+|. .|....|. .++.|+|++|+|++..
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~--~C~~~~C~-------~~~~y~~~~SsT~~~~----------------- 54 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI--YCTSQACT-------KHNRFQPSESSTYVSN----------------- 54 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC--CCCCcccC-------ccceECCCCCcccccC-----------------
Confidence 789999999999999999999999999995 44333332 3478999999999873
Q ss_pred CCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCCh------
Q 016634 190 DPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSV------ 263 (385)
Q Consensus 190 ~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~------ 263 (385)
.|.|.+.|++| ++.|.+++|+|+|++. ...++.|||+..+.+..+.....|||||||++.++.
T Consensus 55 -~~~~~i~Yg~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~ 123 (316)
T cd05486 55 -GEAFSIQYGTG--SLTGIIGIDQVTVEGI--------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPV 123 (316)
T ss_pred -CcEEEEEeCCc--EEEEEeeecEEEECCE--------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCH
Confidence 59999999997 6899999999999875 567999999988776544444679999999987653
Q ss_pred HHHHHHcCCC-CCceEEeecCC----CcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCeEee-cCCceEE
Q 016634 264 PSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSCLT-QSGFQAL 336 (385)
Q Consensus 264 ~~~l~~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~~~~-~~~~~~i 336 (385)
..+|++||++ +++||+||.++ ..|.|+||++|+.+ .+++.|+|+... .+|.|++++|+||++.+. .....+|
T Consensus 124 ~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~-~~w~v~l~~i~v~g~~~~~~~~~~ai 202 (316)
T cd05486 124 FDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ-GYWQIQLDNIQVGGTVIFCSDGCQAI 202 (316)
T ss_pred HHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc-eEEEEEeeEEEEecceEecCCCCEEE
Confidence 5678999999 79999999864 36999999999876 568888887765 899999999999998764 3457899
Q ss_pred EcCcccccccCHHHHHHHHHHH
Q 016634 337 VDSGASFTFLPTEIYAEVVVKF 358 (385)
Q Consensus 337 iDSGTs~t~Lp~~~y~~l~~~~ 358 (385)
|||||++++||+++|++|.+++
T Consensus 203 iDTGTs~~~lP~~~~~~l~~~~ 224 (316)
T cd05486 203 VDTGTSLITGPSGDIKQLQNYI 224 (316)
T ss_pred ECCCcchhhcCHHHHHHHHHHh
Confidence 9999999999999998886655
No 12
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.3e-39 Score=318.51 Aligned_cols=239 Identities=23% Similarity=0.369 Sum_probs=184.2
Q ss_pred ecCCCeE-EEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCC--C---------
Q 016634 116 IGTPNVS-FLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSR--S--------- 183 (385)
Q Consensus 116 iGTP~q~-~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~--~--------- 183 (385)
+|||-.+ |.|++||||+++||+|. |.+|+||+.++|+++.|+.. .
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-----------------------~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~ 58 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-----------------------AGHSSTYQTVPCSSSVCSLANRYHCPGTCGGA 58 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-----------------------CCCcCCCCccCcCChhhccccccCCCccccCC
Confidence 5888777 99999999999999992 45789999999999999753 1
Q ss_pred ---CCCCCCCCCceEEe-cCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCC
Q 016634 184 ---SCKSLKDPCPYIAD-YSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLG 259 (385)
Q Consensus 184 ---~C~~~~~~c~~~~~-Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~ 259 (385)
.|.+ +.|.|... |++| +.+.|.+++|+|+|+..++........+++.|||++++...... ...|||||||++
T Consensus 59 ~~~~c~~--~~C~y~~~~y~~g-s~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~-~~~dGIlGLg~~ 134 (362)
T cd05489 59 PGPGCGN--NTCTAHPYNPVTG-ECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLP-PGAQGVAGLGRS 134 (362)
T ss_pred CCCCCCC--CcCeeEccccccC-cEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCc-cccccccccCCC
Confidence 3432 35888665 7775 78999999999999865332100024689999999886432121 246999999999
Q ss_pred CCChHHHHHHcCCCCCceEEeecCC--CcceEEEcccCCCC----------ceeeeeeecCCCCccEEEeEeEEEEcCeE
Q 016634 260 DVSVPSLLAKAGLIQNSFSICFDEN--DSGSVFFGDQGPAT----------QQSTSFLPIGEKYDAYFVGVESYCIGNSC 327 (385)
Q Consensus 260 ~~S~~~~l~~~g~i~~~FS~cl~~~--~~G~l~fG~~d~~~----------~~~tp~v~~~~~~~~y~v~l~~isVg~~~ 327 (385)
++|+++||..++..+++|||||+++ ..|.|+||+.+..+ ..+||++..+..+.+|+|+|++|+||++.
T Consensus 135 ~lSl~sql~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~ 214 (362)
T cd05489 135 PLSLPAQLASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHA 214 (362)
T ss_pred ccchHHHhhhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEE
Confidence 9999999987766789999999864 47999999987532 34666655432347999999999999998
Q ss_pred eec----------CCceEEEcCcccccccCHHHHHHHHHHHHHhhcccccccc-ccccccccccc
Q 016634 328 LTQ----------SGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQ-GNSWKYCYNAR 381 (385)
Q Consensus 328 ~~~----------~~~~~iiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~-~~~~~~Cy~~s 381 (385)
+.. ...++||||||++|+||+++|++|.++|.++++..+.... ...+++||+.+
T Consensus 215 l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~ 279 (362)
T cd05489 215 VPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPAS 279 (362)
T ss_pred CCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCC
Confidence 753 1347999999999999999999999999999876543322 22248999864
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5.5e-39 Score=306.34 Aligned_cols=212 Identities=23% Similarity=0.365 Sum_probs=178.1
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 016634 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (385)
Q Consensus 110 y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~~~ 188 (385)
|+++|.||||||++.|++||||+++||+|. |..|.... ++.|+|++|+|++.+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~----------~~~y~~~~Sst~~~~---------------- 54 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGG----------HKLYDPSKSSTAKLL---------------- 54 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhcc----------CCcCCCccCccceec----------------
Confidence 789999999999999999999999999997 77775322 467999999999875
Q ss_pred CCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCCh-----
Q 016634 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSV----- 263 (385)
Q Consensus 189 ~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~----- 263 (385)
..|.|.+.|++| +.+.|.+++|+|+|++. ..+++.|||++...+.+......|||||||++..+.
T Consensus 55 -~~~~~~i~Y~~G-~~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~ 124 (278)
T cd06097 55 -PGATWSISYGDG-SSASGIVYTDTVSIGGV--------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPK 124 (278)
T ss_pred -CCcEEEEEeCCC-CeEEEEEEEEEEEECCE--------EECCeEEEEEeecCccccccccccceeeeccccccccccCC
Confidence 258999999996 66899999999999875 568899999998876444545789999999986543
Q ss_pred ----HHHHHHcCCCCCceEEeecCCCcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCeEe-ecCCceEEE
Q 016634 264 ----PSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSCL-TQSGFQALV 337 (385)
Q Consensus 264 ----~~~l~~~g~i~~~FS~cl~~~~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~~~-~~~~~~~ii 337 (385)
..+|.+++. ++.||+||.++..|.|+||++|+.+ .+++.|+|+.....+|.|++++|+||++.. ......+||
T Consensus 125 ~~~~~~~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~ii 203 (278)
T cd06097 125 QKTFFENALSSLD-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIA 203 (278)
T ss_pred CCCHHHHHHHhcc-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEe
Confidence 445777754 8999999997778999999999876 568888887653489999999999999843 346678999
Q ss_pred cCcccccccCHHHHHHHHHHH
Q 016634 338 DSGASFTFLPTEIYAEVVVKF 358 (385)
Q Consensus 338 DSGTs~t~Lp~~~y~~l~~~~ 358 (385)
||||++++||++++++|.+++
T Consensus 204 DSGTs~~~lP~~~~~~l~~~l 224 (278)
T cd06097 204 DTGTTLILLPDAIVEAYYSQV 224 (278)
T ss_pred ecCCchhcCCHHHHHHHHHhC
Confidence 999999999999998887666
No 14
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=1e-38 Score=307.59 Aligned_cols=209 Identities=29% Similarity=0.526 Sum_probs=169.9
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 016634 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (385)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~~~ 188 (385)
+|+++|.||||||++.|++||||+++||+| ..|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c--~~c--------------------------------------------- 33 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQC--QPC--------------------------------------------- 33 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccC--CCC---------------------------------------------
Confidence 499999999999999999999999999988 222
Q ss_pred CCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCChHHHHH
Q 016634 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLA 268 (385)
Q Consensus 189 ~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~~l~ 268 (385)
|.|.+.|++| +.++|.+++|+|+|++. ...+++.|||++.+++.+. ..+||||||+..++++.||.
T Consensus 34 ---~~~~i~Yg~G-s~~~G~~~~D~v~ig~~-------~~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~ 99 (299)
T cd05472 34 ---CLYQVSYGDG-SYTTGDLATDTLTLGSS-------DVVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTA 99 (299)
T ss_pred ---CeeeeEeCCC-ceEEEEEEEEEEEeCCC-------CccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhh
Confidence 6899999996 66799999999999874 1457899999998876542 56999999999999999987
Q ss_pred HcCCCCCceEEeecC---CCcceEEEcccCCCCceeeeeeecCC---CCccEEEeEeEEEEcCeEeec-----CCceEEE
Q 016634 269 KAGLIQNSFSICFDE---NDSGSVFFGDQGPATQQSTSFLPIGE---KYDAYFVGVESYCIGNSCLTQ-----SGFQALV 337 (385)
Q Consensus 269 ~~g~i~~~FS~cl~~---~~~G~l~fG~~d~~~~~~tp~v~~~~---~~~~y~v~l~~isVg~~~~~~-----~~~~~ii 337 (385)
.+ .+++||+||.+ ...|.|+||++|+. .+.+.|+|+.. ...+|.|+|++|+||++.+.. ....+||
T Consensus 100 ~~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~iv 176 (299)
T cd05472 100 SS--YGGVFSYCLPDRSSSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVII 176 (299)
T ss_pred Hh--hcCceEEEccCCCCCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEE
Confidence 64 57899999986 35799999999987 44444444432 236899999999999998753 2457999
Q ss_pred cCcccccccCHHHHHHHHHHHHHhhccccccccccccccccccc
Q 016634 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNAR 381 (385)
Q Consensus 338 DSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~s 381 (385)
||||++++||+++|++|.++|.+++...........++.||+.+
T Consensus 177 DSGTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~ 220 (299)
T cd05472 177 DSGTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLS 220 (299)
T ss_pred eCCCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCC
Confidence 99999999999999999999998775432222223466899764
No 15
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.4e-38 Score=308.68 Aligned_cols=219 Identities=26% Similarity=0.435 Sum_probs=180.0
Q ss_pred ccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCC
Q 016634 103 GNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKS 181 (385)
Q Consensus 103 ~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~ 181 (385)
.|+.+.+||++|.||||+|++.|++||||+++||+|. |..|. ..| ..++.|+|++|+|++.
T Consensus 2 ~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~-~~c-------~~~~~y~~~~SsT~~~---------- 63 (326)
T cd05487 2 TNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLY-TAC-------VTHNLYDASDSSTYKE---------- 63 (326)
T ss_pred cccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcc-hhh-------cccCcCCCCCCeeeeE----------
Confidence 4777899999999999999999999999999999995 65432 122 2357899999999997
Q ss_pred CCCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCCC
Q 016634 182 RSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV 261 (385)
Q Consensus 182 ~~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~ 261 (385)
..|.|.+.|++| ++.|.+++|+|+|++. .. ++.|||+....+.-+.....|||||||++..
T Consensus 64 --------~~~~~~~~Yg~g--~~~G~~~~D~v~~g~~--------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~ 124 (326)
T cd05487 64 --------NGTEFTIHYASG--TVKGFLSQDIVTVGGI--------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQ 124 (326)
T ss_pred --------CCEEEEEEeCCc--eEEEEEeeeEEEECCE--------Ee-eEEEEEEEeccCCccceeecceEEecCChhh
Confidence 359999999997 5899999999999875 22 5789999876432222335799999999765
Q ss_pred C------hHHHHHHcCCC-CCceEEeecCC----CcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCeEee
Q 016634 262 S------VPSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSCLT 329 (385)
Q Consensus 262 S------~~~~l~~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~~~~ 329 (385)
+ +...|++||+| +++||+||.++ ..|.|+||++|+.+ .+.+.|++.... .+|.|.|++|+||++.+.
T Consensus 125 s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~-~~w~v~l~~i~vg~~~~~ 203 (326)
T cd05487 125 AIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT-GFWQIQMKGVSVGSSTLL 203 (326)
T ss_pred cccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC-ceEEEEecEEEECCEEEe
Confidence 4 24568999999 89999999864 36999999999987 567888887664 899999999999999875
Q ss_pred -cCCceEEEcCcccccccCHHHHHHHHHHHH
Q 016634 330 -QSGFQALVDSGASFTFLPTEIYAEVVVKFD 359 (385)
Q Consensus 330 -~~~~~~iiDSGTs~t~Lp~~~y~~l~~~~~ 359 (385)
.....+||||||++++||+++|++|++++.
T Consensus 204 ~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~ 234 (326)
T cd05487 204 CEDGCTAVVDTGASFISGPTSSISKLMEALG 234 (326)
T ss_pred cCCCCEEEECCCccchhCcHHHHHHHHHHhC
Confidence 245689999999999999999998887764
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=8.7e-38 Score=315.08 Aligned_cols=222 Identities=21% Similarity=0.323 Sum_probs=182.3
Q ss_pred CCceeEeccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCC
Q 016634 96 GSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCS 175 (385)
Q Consensus 96 g~~~~~~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~ 175 (385)
.+..+++.|..+.+||++|.||||||+|.|++||||+++||+|. .|....|. .++.|||++|+|++..
T Consensus 126 ~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~--~C~~~~C~-------~~~~yd~s~SsT~~~~--- 193 (453)
T PTZ00147 126 EFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI--KCTTEGCE-------TKNLYDSSKSKTYEKD--- 193 (453)
T ss_pred CCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec--CCCccccc-------CCCccCCccCcceEEC---
Confidence 34678888999999999999999999999999999999999995 44332332 3578999999999873
Q ss_pred CcCCCCCCCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCC--CCCCCCCCee
Q 016634 176 HPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGS--YLDGAAPDGV 253 (385)
Q Consensus 176 ~~~C~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~--~~~~~~~dGI 253 (385)
.|.|.+.|++| ++.|.+++|+|+|++. ..+ ..|+|+.++.+. +......|||
T Consensus 194 ---------------~~~f~i~Yg~G--svsG~~~~DtVtiG~~--------~v~-~qF~~~~~~~~f~~~~~~~~~DGI 247 (453)
T PTZ00147 194 ---------------GTKVEMNYVSG--TVSGFFSKDLVTIGNL--------SVP-YKFIEVTDTNGFEPFYTESDFDGI 247 (453)
T ss_pred ---------------CCEEEEEeCCC--CEEEEEEEEEEEECCE--------EEE-EEEEEEEeccCcccccccccccce
Confidence 48999999997 5899999999999875 334 579998876542 2233467999
Q ss_pred eecCCCCCCh------HHHHHHcCCC-CCceEEeecCC--CcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEE
Q 016634 254 MGLGLGDVSV------PSLLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCI 323 (385)
Q Consensus 254 lGLg~~~~S~------~~~l~~~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isV 323 (385)
||||++.++. +.+|++||+| +++||+||+++ ..|.|+||++|+.+ .+++.|+|+... .+|.|.++ +.+
T Consensus 248 LGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~-~~W~V~l~-~~v 325 (453)
T PTZ00147 248 FGLGWKDLSIGSVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD-LYWQVDLD-VHF 325 (453)
T ss_pred ecccCCccccccCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC-ceEEEEEE-EEE
Confidence 9999987654 5579999999 78999999863 46999999999886 568888888654 89999998 588
Q ss_pred cCeEeecCCceEEEcCcccccccCHHHHHHHHHHHH
Q 016634 324 GNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFD 359 (385)
Q Consensus 324 g~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l~~~~~ 359 (385)
|+... ....+||||||++++||++++++|.+++.
T Consensus 326 g~~~~--~~~~aIiDSGTsli~lP~~~~~ai~~~l~ 359 (453)
T PTZ00147 326 GNVSS--EKANVIVDSGTSVITVPTEFLNKFVESLD 359 (453)
T ss_pred CCEec--CceeEEECCCCchhcCCHHHHHHHHHHhC
Confidence 87543 45789999999999999999988887764
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.7e-37 Score=307.17 Aligned_cols=233 Identities=21% Similarity=0.238 Sum_probs=178.7
Q ss_pred cEEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 016634 108 WLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKS 187 (385)
Q Consensus 108 ~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~~ 187 (385)
..||++|.||||+|+|.|+|||||+++||+|. .|.. .++.|+|++|+|++..
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~--~~~~-----------~~~~f~~~~SsT~~~~--------------- 53 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAA--PHPF-----------IHTYFHRELSSTYRDL--------------- 53 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcC--CCcc-----------ccccCCchhCcCcccC---------------
Confidence 46999999999999999999999999999995 2311 1368999999999984
Q ss_pred CCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCCh----
Q 016634 188 LKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSV---- 263 (385)
Q Consensus 188 ~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~---- 263 (385)
.|.|.+.|++| ++.|.+++|+|+|++... ....+.|++.....+.+......|||||||++.++.
T Consensus 54 ---~~~~~i~Yg~G--s~~G~~~~D~v~ig~~~~------~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~ 122 (364)
T cd05473 54 ---GKGVTVPYTQG--SWEGELGTDLVSIPKGPN------VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSS 122 (364)
T ss_pred ---CceEEEEECcc--eEEEEEEEEEEEECCCCc------cceEEeeEEEeccccceecccccceeeeecccccccCCCC
Confidence 48999999997 679999999999986411 223345677766555444444679999999987643
Q ss_pred ----HHHHHHcCCCCCceEEeecC-----------CCcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCeE
Q 016634 264 ----PSLLAKAGLIQNSFSICFDE-----------NDSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSC 327 (385)
Q Consensus 264 ----~~~l~~~g~i~~~FS~cl~~-----------~~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~~ 327 (385)
..+|++|+.++++||++|.. ...|.|+||++|+.+ .+.+.|+|+... .+|.|.|++|+||++.
T Consensus 123 ~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~-~~~~v~l~~i~vg~~~ 201 (364)
T cd05473 123 VEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE-WYYEVIILKLEVGGQS 201 (364)
T ss_pred CCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc-eeEEEEEEEEEECCEe
Confidence 44688888888899997731 136999999999876 456777777654 7999999999999998
Q ss_pred eecC-----CceEEEcCcccccccCHHHHHHHHHHHHHhhccccccccc--ccccccccc
Q 016634 328 LTQS-----GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQG--NSWKYCYNA 380 (385)
Q Consensus 328 ~~~~-----~~~~iiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~--~~~~~Cy~~ 380 (385)
+... ...+||||||++++||+++|++|.++|.++......+... .....|++.
T Consensus 202 ~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~ 261 (364)
T cd05473 202 LNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQK 261 (364)
T ss_pred cccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccc
Confidence 7531 1369999999999999999999999998876533222211 112479864
No 18
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=2.6e-36 Score=303.90 Aligned_cols=220 Identities=18% Similarity=0.325 Sum_probs=179.4
Q ss_pred CceeEeccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCC
Q 016634 97 SQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSH 176 (385)
Q Consensus 97 ~~~~~~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~ 176 (385)
+..+++.|+.+.+||++|.||||+|+|.|++||||+++||+|. .|....|. .++.|+|++|+|++..
T Consensus 126 ~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~--~C~~~~C~-------~~~~yd~s~SsT~~~~---- 192 (450)
T PTZ00013 126 NDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK--KCDSIGCS-------IKNLYDSSKSKSYEKD---- 192 (450)
T ss_pred CCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc--cCCccccc-------cCCCccCccCcccccC----
Confidence 4568888888999999999999999999999999999999995 34332332 3578999999999873
Q ss_pred cCCCCCCCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccC--CCCCCCCCCeee
Q 016634 177 PLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTG--SYLDGAAPDGVM 254 (385)
Q Consensus 177 ~~C~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g--~~~~~~~~dGIl 254 (385)
.|.+.+.|++| ++.|.+++|+|+|++. ..+ ..|+++....+ ..+.....||||
T Consensus 193 --------------~~~~~i~YG~G--sv~G~~~~Dtv~iG~~--------~~~-~~f~~~~~~~~~~~~~~~~~~dGIl 247 (450)
T PTZ00013 193 --------------GTKVDITYGSG--TVKGFFSKDLVTLGHL--------SMP-YKFIEVTDTDDLEPIYSSSEFDGIL 247 (450)
T ss_pred --------------CcEEEEEECCc--eEEEEEEEEEEEECCE--------EEc-cEEEEEEeccccccceeccccccee
Confidence 58999999997 5899999999999885 333 67888876542 222334679999
Q ss_pred ecCCCCCC------hHHHHHHcCCC-CCceEEeecCC--CcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEc
Q 016634 255 GLGLGDVS------VPSLLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIG 324 (385)
Q Consensus 255 GLg~~~~S------~~~~l~~~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg 324 (385)
|||++.++ ++.+|++||+| +++||+||+++ ..|.|+||++|+.+ .+++.|+|+... .+|.|.++ +.+|
T Consensus 248 GLg~~~~s~~~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~-~yW~I~l~-v~~G 325 (450)
T PTZ00013 248 GLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD-LYWQIDLD-VHFG 325 (450)
T ss_pred cccCCccccccCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC-ceEEEEEE-EEEC
Confidence 99998765 35679999999 78999999864 47999999999886 578888888764 89999998 7777
Q ss_pred CeEeecCCceEEEcCcccccccCHHHHHHHHHHH
Q 016634 325 NSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKF 358 (385)
Q Consensus 325 ~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l~~~~ 358 (385)
.... ....+||||||+++++|+++++++.+++
T Consensus 326 ~~~~--~~~~aIlDSGTSli~lP~~~~~~i~~~l 357 (450)
T PTZ00013 326 KQTM--QKANVIVDSGTTTITAPSEFLNKFFANL 357 (450)
T ss_pred ceec--cccceEECCCCccccCCHHHHHHHHHHh
Confidence 6544 3567999999999999999988777655
No 19
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=7.2e-37 Score=291.16 Aligned_cols=190 Identities=33% Similarity=0.678 Sum_probs=156.1
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeeecC--CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCC
Q 016634 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ--CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCK 186 (385)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~--c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~ 186 (385)
.||++|.||||||+|.|++||||+++||+|. |..|
T Consensus 2 ~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c------------------------------------------- 38 (273)
T cd05475 2 YYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC------------------------------------------- 38 (273)
T ss_pred ceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------------
Confidence 5999999999999999999999999999983 3332
Q ss_pred CCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCC-CCCCCCeeeecCCCCCChHH
Q 016634 187 SLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYL-DGAAPDGVMGLGLGDVSVPS 265 (385)
Q Consensus 187 ~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~-~~~~~dGIlGLg~~~~S~~~ 265 (385)
.|.|.+.|+|+ +.++|.+++|+|+|+...+. ...+++.|||+..+.+.+. ...+.|||||||+++.+++.
T Consensus 39 ----~c~~~i~Ygd~-~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 109 (273)
T cd05475 39 ----QCDYEIEYADG-GSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPS 109 (273)
T ss_pred ----cCccEeEeCCC-CceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHH
Confidence 28999999985 68899999999999754321 2457899999988766432 33467999999999999999
Q ss_pred HHHHcCCCCCceEEeecCCCcceEEEcccCCCCceeeeeeecCCC--CccEEEeEeEEEEcCeEeecCCceEEEcCcccc
Q 016634 266 LLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK--YDAYFVGVESYCIGNSCLTQSGFQALVDSGASF 343 (385)
Q Consensus 266 ~l~~~g~i~~~FS~cl~~~~~G~l~fG~~d~~~~~~tp~v~~~~~--~~~y~v~l~~isVg~~~~~~~~~~~iiDSGTs~ 343 (385)
||+++++++++||+||+++..|.|+||+... +.+.+.|+|+... ..+|.|++++|+||++.+......+||||||++
T Consensus 110 ql~~~~~i~~~Fs~~l~~~~~g~l~~G~~~~-~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~ 188 (273)
T cd05475 110 QLASQGIIKNVIGHCLSSNGGGFLFFGDDLV-PSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSY 188 (273)
T ss_pred HHHhcCCcCceEEEEccCCCCeEEEECCCCC-CCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCce
Confidence 9999998899999999987779999996432 3344555554432 379999999999999976556678999999999
Q ss_pred cccCHHHH
Q 016634 344 TFLPTEIY 351 (385)
Q Consensus 344 t~Lp~~~y 351 (385)
++||+++|
T Consensus 189 t~lp~~~y 196 (273)
T cd05475 189 TYFNAQAY 196 (273)
T ss_pred EEcCCccc
Confidence 99999988
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=5e-36 Score=284.78 Aligned_cols=218 Identities=30% Similarity=0.562 Sum_probs=180.8
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 016634 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (385)
Q Consensus 110 y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~~~ 188 (385)
|+++|.||||+|++.|++||||+++||+|. |..|....+. ...|++..|+++..
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~--------~~~~~~~~s~~~~~----------------- 55 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHP--------RFKYDSSKSSTYKD----------------- 55 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCC--------CCccCccCCceeec-----------------
Confidence 788999999999999999999999999997 7776543321 11377777776665
Q ss_pred CCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCC------CC
Q 016634 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD------VS 262 (385)
Q Consensus 189 ~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~------~S 262 (385)
..|.|.+.|++| ...|.+++|+|+|++. ..+++.|||++...+.+. ....+||||||+.. .+
T Consensus 56 -~~~~~~~~Y~~g--~~~g~~~~D~v~~~~~--------~~~~~~fg~~~~~~~~~~-~~~~~GilGLg~~~~~~~~~~s 123 (283)
T cd05471 56 -TGCTFSITYGDG--SVTGGLGTDTVTIGGL--------TIPNQTFGCATSESGDFS-SSGFDGILGLGFPSLSVDGVPS 123 (283)
T ss_pred -CCCEEEEEECCC--eEEEEEEEeEEEECCE--------EEeceEEEEEeccCCccc-ccccceEeecCCcccccccCCC
Confidence 469999999986 7899999999999986 468999999998875332 34679999999998 78
Q ss_pred hHHHHHHcCCC-CCceEEeecCC----CcceEEEcccCCCC-ceeeeeeecCCC-CccEEEeEeEEEEcCe--EeecCCc
Q 016634 263 VPSLLAKAGLI-QNSFSICFDEN----DSGSVFFGDQGPAT-QQSTSFLPIGEK-YDAYFVGVESYCIGNS--CLTQSGF 333 (385)
Q Consensus 263 ~~~~l~~~g~i-~~~FS~cl~~~----~~G~l~fG~~d~~~-~~~tp~v~~~~~-~~~y~v~l~~isVg~~--~~~~~~~ 333 (385)
++.+|.++++| +++||+||.+. ..|.|+||++++.+ .+.+.|+|+... ..+|.|.|++|.|+++ .......
T Consensus 124 ~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~ 203 (283)
T cd05471 124 FFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGG 203 (283)
T ss_pred HHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCc
Confidence 99999999998 89999999874 68999999999875 455666665542 4899999999999997 3444667
Q ss_pred eEEEcCcccccccCHHHHHHHHHHHHHhhcc
Q 016634 334 QALVDSGASFTFLPTEIYAEVVVKFDKLVSS 364 (385)
Q Consensus 334 ~~iiDSGTs~t~Lp~~~y~~l~~~~~~~~~~ 364 (385)
.++|||||++++||+++|++|.+++......
T Consensus 204 ~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~ 234 (283)
T cd05471 204 GAIVDSGTSLIYLPSSVYDAILKALGAAVSS 234 (283)
T ss_pred EEEEecCCCCEeCCHHHHHHHHHHhCCcccc
Confidence 8999999999999999999999888877664
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.3e-34 Score=272.74 Aligned_cols=178 Identities=30% Similarity=0.595 Sum_probs=151.0
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 016634 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (385)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~~~ 188 (385)
+|+++|.||||||++.|+|||||+++||+|
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-------------------------------------------------- 30 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC-------------------------------------------------- 30 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC--------------------------------------------------
Confidence 499999999999999999999999999986
Q ss_pred CCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCChHHHHH
Q 016634 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLA 268 (385)
Q Consensus 189 ~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~~l~ 268 (385)
|.|.+.|++| +.++|.+++|+|+|++.. ...+++.|||++.+.+ + .....+||||||+...|++.||.
T Consensus 31 ---~~~~~~Y~dg-~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~-~~~~~~GIlGLg~~~~s~~~ql~ 98 (265)
T cd05476 31 ---CSYEYSYGDG-SSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-G-SFGGADGILGLGRGPLSLVSQLG 98 (265)
T ss_pred ---CceEeEeCCC-ceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-C-ccCCCCEEEECCCCcccHHHHhh
Confidence 6889999985 789999999999999852 1468899999999876 3 33467999999999999999998
Q ss_pred HcCCCCCceEEeecC----CCcceEEEcccCCCCceeeeeeecCC---CCccEEEeEeEEEEcCeEee----------cC
Q 016634 269 KAGLIQNSFSICFDE----NDSGSVFFGDQGPATQQSTSFLPIGE---KYDAYFVGVESYCIGNSCLT----------QS 331 (385)
Q Consensus 269 ~~g~i~~~FS~cl~~----~~~G~l~fG~~d~~~~~~tp~v~~~~---~~~~y~v~l~~isVg~~~~~----------~~ 331 (385)
.++ ++||+||.+ +..|+|+||++|+.+.+.+.|+|+.. ...+|.|+|++|+||++.+. ..
T Consensus 99 ~~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~ 175 (265)
T cd05476 99 STG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDG 175 (265)
T ss_pred ccc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCC
Confidence 876 899999986 34799999999987544555555433 24799999999999999764 24
Q ss_pred CceEEEcCcccccccCHHHH
Q 016634 332 GFQALVDSGASFTFLPTEIY 351 (385)
Q Consensus 332 ~~~~iiDSGTs~t~Lp~~~y 351 (385)
...+||||||++++||+++|
T Consensus 176 ~~~ai~DTGTs~~~lp~~~~ 195 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDPAY 195 (265)
T ss_pred CCcEEEeCCCcceEcCcccc
Confidence 56799999999999999998
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.4e-33 Score=270.00 Aligned_cols=217 Identities=30% Similarity=0.556 Sum_probs=179.4
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 016634 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKS 187 (385)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~~ 187 (385)
.|+++|.||||+|++.|++||||+.+||++. |..|. .| .....|+|.+|+|++..
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~--~~-------~~~~~y~~~~S~t~~~~--------------- 56 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCS--SC-------ASSGFYNPSKSSTFSNQ--------------- 56 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHT--HH-------CTSC-BBGGGSTTEEEE---------------
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceecccccc--cc-------ccccccccccccccccc---------------
Confidence 4999999999999999999999999999986 66551 11 12478999999999985
Q ss_pred CCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCC-------
Q 016634 188 LKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGD------- 260 (385)
Q Consensus 188 ~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~------- 260 (385)
.+.+.+.|++| .++|.+++|+|.|++. ...++.||++....+........+||||||+..
T Consensus 57 ---~~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~ 123 (317)
T PF00026_consen 57 ---GKPFSISYGDG--SVSGNLVSDTVSIGGL--------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTY 123 (317)
T ss_dssp ---EEEEEEEETTE--EEEEEEEEEEEEETTE--------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS
T ss_pred ---eeeeeeeccCc--ccccccccceEeeeec--------cccccceeccccccccccccccccccccccCCcccccccC
Confidence 37899999997 4999999999999886 567899999999755433334679999999753
Q ss_pred CChHHHHHHcCCC-CCceEEeecCCC--cceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCe-EeecCCceE
Q 016634 261 VSVPSLLAKAGLI-QNSFSICFDEND--SGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNS-CLTQSGFQA 335 (385)
Q Consensus 261 ~S~~~~l~~~g~i-~~~FS~cl~~~~--~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~-~~~~~~~~~ 335 (385)
.++..+|.++|+| +++||++|.+.. .|.|+||++|+.+ .+++.|++.... .+|.|.+++|.++++ ........+
T Consensus 124 ~~~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~-~~w~v~~~~i~i~~~~~~~~~~~~~ 202 (317)
T PF00026_consen 124 PTFLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS-GYWSVPLDSISIGGESVFSSSGQQA 202 (317)
T ss_dssp -SHHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST-TTTEEEEEEEEETTEEEEEEEEEEE
T ss_pred CcceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcccc-cccccccccccccccccccccceee
Confidence 4567789999999 899999998864 6999999999987 567888888754 899999999999999 444455789
Q ss_pred EEcCcccccccCHHHHHHHHHHHHHhhc
Q 016634 336 LVDSGASFTFLPTEIYAEVVVKFDKLVS 363 (385)
Q Consensus 336 iiDSGTs~t~Lp~~~y~~l~~~~~~~~~ 363 (385)
+|||||++++||++++++|++++.....
T Consensus 203 ~~Dtgt~~i~lp~~~~~~i~~~l~~~~~ 230 (317)
T PF00026_consen 203 ILDTGTSYIYLPRSIFDAIIKALGGSYS 230 (317)
T ss_dssp EEETTBSSEEEEHHHHHHHHHHHTTEEE
T ss_pred ecccccccccccchhhHHHHhhhccccc
Confidence 9999999999999999999888876544
No 23
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=1.2e-32 Score=264.39 Aligned_cols=197 Identities=27% Similarity=0.455 Sum_probs=162.4
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 016634 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSL 188 (385)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~~~ 188 (385)
.|+++|.||||+|++.|++||||+++||+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~--------------------------------------------------- 30 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP--------------------------------------------------- 30 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee---------------------------------------------------
Confidence 68999999999999999999999999994
Q ss_pred CCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCCC-------
Q 016634 189 KDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDV------- 261 (385)
Q Consensus 189 ~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~------- 261 (385)
.|++.|++| +.+.|.+++|+|+|++. ...++.|||++... ..+||||||+...
T Consensus 31 ----~~~~~Y~~g-~~~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~ 90 (295)
T cd05474 31 ----DFSISYGDG-TSASGTWGTDTVSIGGA--------TVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTG 90 (295)
T ss_pred ----eeEEEeccC-CcEEEEEEEEEEEECCe--------EecceEEEEEecCC-------CCcceeeECCCCCcccccCC
Confidence 467889985 68999999999999875 45789999998732 4589999999886
Q ss_pred ----ChHHHHHHcCCC-CCceEEeecCC--CcceEEEcccCCCC-ceeeeeeecCCCC-----ccEEEeEeEEEEcCeEe
Q 016634 262 ----SVPSLLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPAT-QQSTSFLPIGEKY-----DAYFVGVESYCIGNSCL 328 (385)
Q Consensus 262 ----S~~~~l~~~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~~-~~~tp~v~~~~~~-----~~y~v~l~~isVg~~~~ 328 (385)
+++.+|+++|+| +++||+||++. ..|.|+||++|..+ .+.+.|+|+.... .+|.|.+++|+|+++.+
T Consensus 91 ~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~ 170 (295)
T cd05474 91 YTYPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSG 170 (295)
T ss_pred CcCCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCC
Confidence 678999999999 79999999874 57999999999876 4566666655432 68999999999999875
Q ss_pred e----cCCceEEEcCcccccccCHHHHHHHHHHHHHhhcccccccccccccccccc
Q 016634 329 T----QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNA 380 (385)
Q Consensus 329 ~----~~~~~~iiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~ 380 (385)
. .....+||||||++++||+++|++|.+++.+..... ....+..|++.
T Consensus 171 ~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~----~~~~~~~C~~~ 222 (295)
T cd05474 171 NTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD----EGLYVVDCDAK 222 (295)
T ss_pred cccccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC----CcEEEEeCCCC
Confidence 3 345689999999999999999999988886654322 22345678764
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=100.00 E-value=1e-32 Score=243.12 Aligned_cols=157 Identities=39% Similarity=0.764 Sum_probs=127.7
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCC----CC
Q 016634 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRS----SC 185 (385)
Q Consensus 110 y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~----~C 185 (385)
||++|.||||+|++.|++||||+++|++| ..+.|+|++|+||+.++|+++.|.... .|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C------------------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~ 62 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC------------------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCC 62 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET----------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCC
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC------------------CCcccCCccCCcccccCCCCcchhhcccccccC
Confidence 89999999999999999999999999998 148899999999999999999998542 34
Q ss_pred CCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCCCCCChHH
Q 016634 186 KSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPS 265 (385)
Q Consensus 186 ~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~ 265 (385)
....+.|.|.+.|++ ++.+.|.+++|+|+++...+.. ....++.|||++.+.|.+. ..+||||||++++|+++
T Consensus 63 ~~~~~~C~y~~~y~~-~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~s 135 (164)
T PF14543_consen 63 CCSNNSCPYSQSYGD-GSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPS 135 (164)
T ss_dssp TCESSEEEEEEEETT-TEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHH
T ss_pred CCCcCcccceeecCC-CccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHH
Confidence 555578999999999 4899999999999999874332 3567999999999987664 56999999999999999
Q ss_pred HHHHcCCCCCceEEeecC---CCcceEEEcc
Q 016634 266 LLAKAGLIQNSFSICFDE---NDSGSVFFGD 293 (385)
Q Consensus 266 ~l~~~g~i~~~FS~cl~~---~~~G~l~fG~ 293 (385)
||+++ ..++|||||.+ +..|.|+||+
T Consensus 136 Ql~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 136 QLASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HHHHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred HHHHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 99887 78999999988 4679999995
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.90 E-value=4.6e-23 Score=168.91 Aligned_cols=107 Identities=38% Similarity=0.609 Sum_probs=90.3
Q ss_pred EEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCC-CCCCCCCCccccCCCcCCCCCCCCCCCC
Q 016634 112 TWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEY-DPSSSSSSKNVSCSHPLCKSRSSCKSLK 189 (385)
Q Consensus 112 ~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f-~ps~SsT~~~v~C~~~~C~~~~~C~~~~ 189 (385)
++|.||||||++.|+|||||+++||+|. |..|.... .+.| +|++|++++.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~----------~~~~~~~~~sst~~~------------------ 52 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS----------HSSYDDPSASSTYSD------------------ 52 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc----------ccccCCcCCCCCCCC------------------
Confidence 3689999999999999999999999997 77665433 2445 9999999987
Q ss_pred CCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeec
Q 016634 190 DPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGL 256 (385)
Q Consensus 190 ~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGL 256 (385)
..|.|.+.|++| ++.|.++.|+|+|++. ..+++.|||++...+.++.....+|||||
T Consensus 53 ~~~~~~~~Y~~g--~~~g~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 53 NGCTFSITYGTG--SLSGGLSTDTVSIGDI--------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCcEEEEEeCCC--eEEEEEEEEEEEECCE--------EECCEEEEEEEecCCccccccccccccCC
Confidence 359999999997 6789999999999875 46899999999998875555577999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.15 E-value=7e-11 Score=103.68 Aligned_cols=70 Identities=24% Similarity=0.525 Sum_probs=54.5
Q ss_pred cEEEeEeEEEEcCeEeec--C-------CceEEEcCcccccccCHHHHHHHHHHHHHhhccccc---ccccccccccccc
Q 016634 313 AYFVGVESYCIGNSCLTQ--S-------GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRI---SLQGNSWKYCYNA 380 (385)
Q Consensus 313 ~y~v~l~~isVg~~~~~~--~-------~~~~iiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~---~~~~~~~~~Cy~~ 380 (385)
+|+|+|++|+||++++.. . ...+||||||++|+||+++|++|+++|.+++..... .....++++||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 599999999999999863 2 346999999999999999999999999999988753 2334679999998
Q ss_pred cc
Q 016634 381 RL 382 (385)
Q Consensus 381 s~ 382 (385)
++
T Consensus 81 ~~ 82 (161)
T PF14541_consen 81 SS 82 (161)
T ss_dssp GC
T ss_pred cc
Confidence 86
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.63 E-value=0.00029 Score=55.33 Aligned_cols=92 Identities=12% Similarity=0.079 Sum_probs=60.7
Q ss_pred EEEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 016634 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKS 187 (385)
Q Consensus 109 ~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~~~C~~ 187 (385)
.|++++.|+ .+++.+++|||++.+|+... ...+. . + ..
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~~l~---------------~--~-----~~----------------- 40 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAERLG---------------L--P-----LT----------------- 40 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHHHcC---------------C--C-----cc-----------------
Confidence 478999999 79999999999999999763 11111 0 0 00
Q ss_pred CCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecCC
Q 016634 188 LKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGL 258 (385)
Q Consensus 188 ~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg~ 258 (385)
......+...+| .........+.+++++. ...++.+........ ..|||||+.+
T Consensus 41 --~~~~~~~~~~~G-~~~~~~~~~~~i~ig~~--------~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 41 --LGGKVTVQTANG-RVRAARVRLDSLQIGGI--------TLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred --CCCcEEEEecCC-CccceEEEcceEEECCc--------EEeccEEEEeCCccc------CCceEeChHH
Confidence 124556666765 44555566888899875 345566666544321 4699999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=94.98 E-value=0.3 Score=40.63 Aligned_cols=35 Identities=9% Similarity=-0.005 Sum_probs=29.2
Q ss_pred eccccccEEEEEEEecCCCeEEEEEEEcCCCceeeec
Q 016634 102 FGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPC 138 (385)
Q Consensus 102 ~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c 138 (385)
+.-..+..|++++.|. ++++.+++|||++.+-+..
T Consensus 4 i~~~~~g~~~v~~~In--G~~~~flVDTGAs~t~is~ 38 (121)
T TIGR02281 4 LAKDGDGHFYATGRVN--GRNVRFLVDTGATSVALNE 38 (121)
T ss_pred EEEcCCCeEEEEEEEC--CEEEEEEEECCCCcEEcCH
Confidence 3445577899999997 7899999999999988865
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=93.87 E-value=0.67 Score=35.36 Aligned_cols=24 Identities=8% Similarity=0.198 Sum_probs=19.9
Q ss_pred EEEecCCCeEEEEEEEcCCCceeeec
Q 016634 113 WIDIGTPNVSFLVALDAGSNLLWVPC 138 (385)
Q Consensus 113 ~i~iGTP~q~~~v~~DTGS~~~Wv~c 138 (385)
++.|+ .+++.+++|||++.+.+..
T Consensus 2 ~v~vn--g~~~~~liDTGa~~~~i~~ 25 (90)
T PF13650_consen 2 PVKVN--GKPVRFLIDTGASISVISR 25 (90)
T ss_pred EEEEC--CEEEEEEEcCCCCcEEECH
Confidence 45676 6899999999999888765
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.32 E-value=0.94 Score=37.65 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=26.7
Q ss_pred ccEEEEEEEecCCCeEEEEEEEcCCCceeeecC
Q 016634 107 YWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ 139 (385)
Q Consensus 107 ~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~ 139 (385)
...+|+++.|+ ++++.+++|||+...++...
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 34688999998 78999999999999998764
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=90.25 E-value=0.35 Score=37.72 Aligned_cols=27 Identities=15% Similarity=0.170 Sum_probs=24.3
Q ss_pred EEEEEEecCCCeEEEEEEEcCCCceeeec
Q 016634 110 HYTWIDIGTPNVSFLVALDAGSNLLWVPC 138 (385)
Q Consensus 110 y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c 138 (385)
+|+.+.|+ ++++.+.+||||+..++.-
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~ 27 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISE 27 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCH
Confidence 57888998 8999999999999999976
No 32
>PF13650 Asp_protease_2: Aspartyl protease
Probab=87.50 E-value=0.71 Score=35.21 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=24.3
Q ss_pred EEEcCeEeecCCceEEEcCcccccccCHHHHHHH
Q 016634 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (385)
Q Consensus 321 isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l 354 (385)
+.|+|+.+ .++||||.+.+.+.+++++++
T Consensus 3 v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 67788755 499999999999999988666
No 33
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=86.59 E-value=1.5 Score=36.32 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=28.1
Q ss_pred ccEEEeEeEEEEcCeEeecCCceEEEcCcccccccCHHHHHHH
Q 016634 312 DAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (385)
Q Consensus 312 ~~y~v~l~~isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l 354 (385)
++|.+. +.|+|+.+ ..+||||.+.+.++.++.+++
T Consensus 10 g~~~v~---~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 677665 56788854 599999999999999977655
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=84.45 E-value=1.6 Score=32.59 Aligned_cols=29 Identities=31% Similarity=0.554 Sum_probs=25.0
Q ss_pred EEEcCeEeecCCceEEEcCcccccccCHHHHHHH
Q 016634 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (385)
Q Consensus 321 isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l 354 (385)
+.|++..+. ++||||.+-.+++.+..+++
T Consensus 13 ~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 667887664 99999999999999988776
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=83.88 E-value=1.4 Score=34.22 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=26.2
Q ss_pred EEEEcCeEeecCCceEEEcCcccccccCHHHHHHHH
Q 016634 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355 (385)
Q Consensus 320 ~isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l~ 355 (385)
.+.|+|+.+. ++||||++.+.++++.+.++-
T Consensus 4 ~~~Ing~~i~-----~lvDTGA~~svis~~~~~~lg 34 (91)
T cd05484 4 TLLVNGKPLK-----FQLDTGSAITVISEKTWRKLG 34 (91)
T ss_pred EEEECCEEEE-----EEEcCCcceEEeCHHHHHHhC
Confidence 3678888775 999999999999999887663
No 36
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=80.38 E-value=3 Score=31.98 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=24.0
Q ss_pred EEEEcCeEeecCCceEEEcCcccccccCHHHHHHH
Q 016634 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (385)
Q Consensus 320 ~isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l 354 (385)
.+.|+++.+ .++||||++.++++.+..+++
T Consensus 6 ~v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 366777665 499999999999999876655
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=80.23 E-value=3.7 Score=30.53 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=27.2
Q ss_pred ccEEEEEEEecCCCeEEEEEEEcCCCceeeecC
Q 016634 107 YWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ 139 (385)
Q Consensus 107 ~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~ 139 (385)
...+++.+.|| ++.+.+++|||++-..|+..
T Consensus 6 ~g~~~v~~~I~--g~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIG--GVQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEEC--CEEEEEEEeCCCcceecCHH
Confidence 46788999999 69999999999999988774
No 38
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=79.29 E-value=3.1 Score=32.69 Aligned_cols=26 Identities=19% Similarity=0.334 Sum_probs=21.6
Q ss_pred EEEEEecCCCeEEEEEEEcCCCceeeec
Q 016634 111 YTWIDIGTPNVSFLVALDAGSNLLWVPC 138 (385)
Q Consensus 111 ~~~i~iGTP~q~~~v~~DTGS~~~Wv~c 138 (385)
+.+|.|. .+++.+++||||+.+-++.
T Consensus 7 ~i~v~i~--g~~i~~LlDTGA~vsiI~~ 32 (100)
T PF00077_consen 7 YITVKIN--GKKIKALLDTGADVSIISE 32 (100)
T ss_dssp EEEEEET--TEEEEEEEETTBSSEEESS
T ss_pred eEEEeEC--CEEEEEEEecCCCcceecc
Confidence 3456777 6799999999999998876
No 39
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=71.54 E-value=4.8 Score=30.98 Aligned_cols=29 Identities=21% Similarity=0.345 Sum_probs=24.1
Q ss_pred EEEcCeEeecCCceEEEcCcccccccCHHHHHHH
Q 016634 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (385)
Q Consensus 321 isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l 354 (385)
+.|+|+.+. .++|||.+.+.++++..+++
T Consensus 3 v~InG~~~~-----fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-----FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-----EEEECCCCeEEECHHHhhhc
Confidence 567777654 89999999999999987664
No 40
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=70.77 E-value=5.1 Score=33.18 Aligned_cols=29 Identities=28% Similarity=0.347 Sum_probs=23.6
Q ss_pred EEEcCeEeecCCceEEEcCcccccccCHHHHHHH
Q 016634 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (385)
Q Consensus 321 isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l 354 (385)
+.|+|..+ .++||||.+.++++.+..+++
T Consensus 21 ~~Ing~~~-----~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 21 VEINGVPV-----KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEECCEEE-----EEEEeCCCceEEeCHHHHHHc
Confidence 56677765 489999999999999987664
No 41
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=68.99 E-value=7 Score=30.50 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=19.9
Q ss_pred EEecCCCeEEEEEEEcCCCceeeec
Q 016634 114 IDIGTPNVSFLVALDAGSNLLWVPC 138 (385)
Q Consensus 114 i~iGTP~q~~~v~~DTGS~~~Wv~c 138 (385)
+.|+ .|.+.+++|||+|++-+.-
T Consensus 3 ~~i~--g~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 3 LYIN--GKLFEGLLDTGADVSIIAE 25 (87)
T ss_pred EEEC--CEEEEEEEccCCCCeEEcc
Confidence 4566 7999999999999999865
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=66.42 E-value=4.2 Score=31.91 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=22.0
Q ss_pred EEEEcCeEeecCCceEEEcCcccccccCHHHH
Q 016634 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEIY 351 (385)
Q Consensus 320 ~isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y 351 (385)
.|.++|+.+. ++||||...++++.+.+
T Consensus 9 ~v~i~g~~i~-----~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKIK-----ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEEE-----EEEETTBSSEEESSGGS
T ss_pred EEeECCEEEE-----EEEecCCCcceeccccc
Confidence 3667777654 99999999999998865
No 43
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=60.69 E-value=48 Score=30.20 Aligned_cols=85 Identities=8% Similarity=-0.015 Sum_probs=57.8
Q ss_pred cCCCCceeEeccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccc
Q 016634 93 PSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNV 172 (385)
Q Consensus 93 ~~~g~~~~~~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v 172 (385)
...|...+.+....+..|+++..|- +|++..++|||-..+-++-. .-. .--+|....
T Consensus 89 ~~~g~~~v~Lak~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~--dA~-------------RlGid~~~l------ 145 (215)
T COG3577 89 VGDGYQEVSLAKSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEE--DAR-------------RLGIDLNSL------ 145 (215)
T ss_pred CCCCceEEEEEecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHH--HHH-------------HhCCCcccc------
Confidence 3344456777777788899999997 89999999999988887651 110 012444321
Q ss_pred cCCCcCCCCCCCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccC
Q 016634 173 SCSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASF 219 (385)
Q Consensus 173 ~C~~~~C~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~ 219 (385)
..++.+.-.+| ......+--|.|.|+++
T Consensus 146 ------------------~y~~~v~TANG-~~~AA~V~Ld~v~IG~I 173 (215)
T COG3577 146 ------------------DYTITVSTANG-RARAAPVTLDRVQIGGI 173 (215)
T ss_pred ------------------CCceEEEccCC-ccccceEEeeeEEEccE
Confidence 35666777776 33344677899999987
No 44
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=59.22 E-value=10 Score=29.85 Aligned_cols=31 Identities=19% Similarity=0.313 Sum_probs=23.8
Q ss_pred EEEcCeEeecCCceEEEcCcccccccCHHHHHHHH
Q 016634 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVV 355 (385)
Q Consensus 321 isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l~ 355 (385)
+.++++ ......+|||.+...||...|.++.
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhhc
Confidence 556663 1235899999999999999988774
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=58.79 E-value=13 Score=28.51 Aligned_cols=23 Identities=17% Similarity=0.323 Sum_probs=19.3
Q ss_pred EEecCCCeEEEEEEEcCCCceeeec
Q 016634 114 IDIGTPNVSFLVALDAGSNLLWVPC 138 (385)
Q Consensus 114 i~iGTP~q~~~v~~DTGS~~~Wv~c 138 (385)
+.|. ++++.+++|||++.+-+..
T Consensus 3 v~In--G~~~~fLvDTGA~~tii~~ 25 (86)
T cd06095 3 ITVE--GVPIVFLVDTGATHSVLKS 25 (86)
T ss_pred EEEC--CEEEEEEEECCCCeEEECH
Confidence 4555 7899999999999999876
No 46
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=57.39 E-value=12 Score=31.29 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=23.5
Q ss_pred EEEcCeEeecCCceEEEcCcccccccCHHHHHHH
Q 016634 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (385)
Q Consensus 321 isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l 354 (385)
+.|+|+.+. |+||||+..+.++.+..+++
T Consensus 29 ~~ing~~vk-----A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 29 CKINGVPVK-----AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEETTEEEE-----EEEETT-SS-EEEHHHHHHT
T ss_pred EEECCEEEE-----EEEeCCCCccccCHHHHHHc
Confidence 678898875 99999999999999988774
No 47
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=53.06 E-value=33 Score=31.23 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=28.0
Q ss_pred ccEEEeEeEEEEcCeEeecCCceEEEcCcccccccCHHHHHH
Q 016634 312 DAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAE 353 (385)
Q Consensus 312 ~~y~v~l~~isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~ 353 (385)
++|.++ ..|+|+.+. .++|||.|.+.|+++.-+.
T Consensus 104 GHF~a~---~~VNGk~v~-----fLVDTGATsVal~~~dA~R 137 (215)
T COG3577 104 GHFEAN---GRVNGKKVD-----FLVDTGATSVALNEEDARR 137 (215)
T ss_pred CcEEEE---EEECCEEEE-----EEEecCcceeecCHHHHHH
Confidence 788776 679999886 8999999999999886433
No 48
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=45.20 E-value=13 Score=30.87 Aligned_cols=20 Identities=25% Similarity=0.672 Sum_probs=18.1
Q ss_pred EEEcCccc-ccccCHHHHHHH
Q 016634 335 ALVDSGAS-FTFLPTEIYAEV 354 (385)
Q Consensus 335 ~iiDSGTs-~t~Lp~~~y~~l 354 (385)
.+||||-+ ++.+|.++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 58999999 999999998876
No 49
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=44.87 E-value=1.3e+02 Score=29.80 Aligned_cols=136 Identities=15% Similarity=0.294 Sum_probs=69.3
Q ss_pred ecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEE----------EEEecc-CCCCCCCCCCeeeecCCCCCCh--
Q 016634 197 DYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIG----------CGRKQT-GSYLDGAAPDGVMGLGLGDVSV-- 263 (385)
Q Consensus 197 ~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fG----------c~~~~~-g~~~~~~~~dGIlGLg~~~~S~-- 263 (385)
.|++| ..=|-+.+-.|+|+++... .++-|+++ |..... ..-......+||||+|.-..--
T Consensus 83 ~F~sg--ytWGsVr~AdV~igge~A~-----~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~ 155 (370)
T PF11925_consen 83 QFASG--YTWGSVRTADVTIGGETAS-----SIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGA 155 (370)
T ss_pred hccCc--ccccceEEEEEEEcCeecc-----ccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCc
Confidence 45665 4558889999999987321 12333333 322211 0001123569999998743211
Q ss_pred ---------------------HHH--HHHcCCCCCceEEeecCC----------------CcceEEEcccCCCC--cee-
Q 016634 264 ---------------------PSL--LAKAGLIQNSFSICFDEN----------------DSGSVFFGDQGPAT--QQS- 301 (385)
Q Consensus 264 ---------------------~~~--l~~~g~i~~~FS~cl~~~----------------~~G~l~fG~~d~~~--~~~- 301 (385)
... +.+| +..|+..+-.+.| ..|.|+||=--... ...
T Consensus 156 ~C~~sa~~~~YY~C~~~~sCt~t~v~~~~Q-V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~ 234 (370)
T PF11925_consen 156 ACAQSALPGNYYSCPSGGSCTSTTVPLAQQ-VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSG 234 (370)
T ss_pred hhhcccCCCceEECCCCCCeecccchhhhc-ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCccccc
Confidence 111 2322 3356655544332 24899998433332 222
Q ss_pred eeeeecCCCCccEEEeEeEEEEcCeEeecCCceEEEcCcccccccCHHH
Q 016634 302 TSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEI 350 (385)
Q Consensus 302 tp~v~~~~~~~~y~v~l~~isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~ 350 (385)
...+..+.. ++..- ..+|+... ...||||+--.++++..
T Consensus 235 ~~~~~~~~~-G~~tt-----~~~G~t~~----~sf~DSGSNg~fF~d~~ 273 (370)
T PF11925_consen 235 ATVLTTDSN-GDFTT-----TFNGQTYS----ASFFDSGSNGYFFPDSS 273 (370)
T ss_pred ceEEeecCC-ceEEE-----EecCceee----eeeEecCCceeeccCCC
Confidence 333344332 33222 22344332 24999999999988653
No 50
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=44.70 E-value=19 Score=30.12 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=25.2
Q ss_pred cEEEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCC
Q 016634 108 WLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCA 144 (385)
Q Consensus 108 ~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~ 144 (385)
...|+++.|. .+++++.+|||...+-+.-. +..|.
T Consensus 23 ~mLyI~~~in--g~~vkA~VDtGAQ~tims~~~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKIN--GVPVKAFVDTGAQSTIMSKSCAERCG 58 (124)
T ss_dssp ---EEEEEET--TEEEEEEEETT-SS-EEEHHHHHHTT
T ss_pred ceEEEEEEEC--CEEEEEEEeCCCCccccCHHHHHHcC
Confidence 3588999999 89999999999999988775 34564
No 51
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=41.15 E-value=18 Score=29.17 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=18.8
Q ss_pred CceEEEcCcccccc-cCHHHHHHH
Q 016634 332 GFQALVDSGASFTF-LPTEIYAEV 354 (385)
Q Consensus 332 ~~~~iiDSGTs~t~-Lp~~~y~~l 354 (385)
...++||||.+... +|.++++++
T Consensus 16 ~v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 16 EVRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEEECCCCeEEecCHHHHHHc
Confidence 34699999999886 999987665
No 52
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=37.85 E-value=40 Score=29.60 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.6
Q ss_pred EEEEecCCCeEEEEEEEcCCCceeeec
Q 016634 112 TWIDIGTPNVSFLVALDAGSNLLWVPC 138 (385)
Q Consensus 112 ~~i~iGTP~q~~~v~~DTGS~~~Wv~c 138 (385)
..+.+++-+.++.++|||||....+..
T Consensus 35 ~~v~l~~~~t~i~vLfDSGSPTSfIr~ 61 (177)
T PF12384_consen 35 AIVQLNCKGTPIKVLFDSGSPTSFIRS 61 (177)
T ss_pred EEEEEeecCcEEEEEEeCCCccceeeh
Confidence 346677778999999999999988876
No 53
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=31.06 E-value=89 Score=21.85 Aligned_cols=21 Identities=43% Similarity=0.691 Sum_probs=18.2
Q ss_pred eEEEcCcccccccCHHHHHHH
Q 016634 334 QALVDSGASFTFLPTEIYAEV 354 (385)
Q Consensus 334 ~~iiDSGTs~t~Lp~~~y~~l 354 (385)
.+++|+|.+...+..+.+...
T Consensus 11 ~~liDtgs~~~~~~~~~~~~~ 31 (92)
T cd00303 11 RALVDSGASVNFISESLAKKL 31 (92)
T ss_pred EEEEcCCCcccccCHHHHHHc
Confidence 599999999999999987654
No 54
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=28.82 E-value=1.5e+02 Score=24.93 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=16.6
Q ss_pred eEEEcCcccccccCHHHHHH
Q 016634 334 QALVDSGASFTFLPTEIYAE 353 (385)
Q Consensus 334 ~~iiDSGTs~t~Lp~~~y~~ 353 (385)
.++||||.|-.++......+
T Consensus 34 ~vLiDSGAThsFIs~~~a~~ 53 (135)
T PF08284_consen 34 SVLIDSGATHSFISSSFAKK 53 (135)
T ss_pred EEEEecCCCcEEccHHHHHh
Confidence 49999999999998886543
No 55
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=22.55 E-value=1.2e+02 Score=24.50 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=22.8
Q ss_pred EEEcCeEeecCCceEEEcCcccccccCHHHHHHH
Q 016634 321 YCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEV 354 (385)
Q Consensus 321 isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~y~~l 354 (385)
..++|..+. |+||||+-.|.+...--++.
T Consensus 3 Ck~nG~~vk-----AfVDsGaQ~timS~~caerc 31 (103)
T cd05480 3 CQCAGKELR-----ALVDTGCQYNLISAACLDRL 31 (103)
T ss_pred eeECCEEEE-----EEEecCCchhhcCHHHHHHc
Confidence 356666665 99999999999998876653
No 56
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=22.03 E-value=80 Score=29.59 Aligned_cols=28 Identities=18% Similarity=0.171 Sum_probs=20.8
Q ss_pred EEEEcCeEeecCCceEEEcCcccccccCHHH
Q 016634 320 SYCIGNSCLTQSGFQALVDSGASFTFLPTEI 350 (385)
Q Consensus 320 ~isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~ 350 (385)
.|.||... ..+.+++|||++.+++|..-
T Consensus 4 ~i~vGtP~---Q~~~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 4 PVKIGTPP---QTLNLDLDTGSSDLWVFSSE 31 (278)
T ss_pred eEEECCCC---cEEEEEEeCCCCceeEeeCC
Confidence 47777632 24569999999999998653
No 57
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=21.39 E-value=1.3e+02 Score=24.18 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=18.9
Q ss_pred EEEEecCC----CeEEEEEEEcCCCcee-eec
Q 016634 112 TWIDIGTP----NVSFLVALDAGSNLLW-VPC 138 (385)
Q Consensus 112 ~~i~iGTP----~q~~~v~~DTGS~~~W-v~c 138 (385)
++|.|..| .-++.+++|||....- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 45677776 2367899999988654 544
No 58
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=21.06 E-value=74 Score=30.71 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=22.0
Q ss_pred EeEEEEcCeEeecCCceEEEcCcccccccCHHH
Q 016634 318 VESYCIGNSCLTQSGFQALVDSGASFTFLPTEI 350 (385)
Q Consensus 318 l~~isVg~~~~~~~~~~~iiDSGTs~t~Lp~~~ 350 (385)
+..|.||.-. ..+.++||||++.+++|-.-
T Consensus 5 ~~~i~vGtP~---Q~~~v~~DTGS~~~wv~~~~ 34 (326)
T cd06096 5 FIDIFIGNPP---QKQSLILDTGSSSLSFPCSQ 34 (326)
T ss_pred EEEEEecCCC---eEEEEEEeCCCCceEEecCC
Confidence 3457788632 34679999999999998653
Done!