Query 016636
Match_columns 385
No_of_seqs 128 out of 1431
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 08:38:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 1.6E-46 3.5E-51 358.6 24.0 342 24-376 22-375 (437)
2 PTZ00206 amino acid transporte 100.0 1.7E-45 3.8E-50 360.9 24.1 330 38-376 58-403 (467)
3 KOG1304 Amino acid transporter 100.0 1.5E-43 3.3E-48 332.6 21.5 317 37-370 44-376 (449)
4 PF01490 Aa_trans: Transmembra 100.0 7.2E-45 1.6E-49 353.9 7.4 325 38-369 1-335 (409)
5 PLN03074 auxin influx permease 100.0 4.6E-37 1E-41 300.2 20.7 317 37-376 43-377 (473)
6 KOG1305 Amino acid transporter 100.0 5.8E-36 1.3E-40 284.8 19.5 318 36-365 2-332 (411)
7 KOG4303 Vesicular inhibitory a 100.0 4.8E-33 1E-37 247.4 9.0 324 34-375 111-455 (524)
8 COG0814 SdaC Amino acid permea 100.0 1.3E-29 2.7E-34 244.5 23.1 265 35-311 4-269 (415)
9 PRK09664 tryptophan permease T 99.9 4E-21 8.6E-26 182.6 21.5 327 36-381 5-345 (415)
10 PRK10483 tryptophan permease; 99.9 6.8E-21 1.5E-25 181.2 21.4 326 35-381 6-344 (414)
11 TIGR00837 araaP aromatic amino 99.9 7.1E-21 1.5E-25 183.5 17.6 288 46-348 3-303 (381)
12 PF03222 Trp_Tyr_perm: Tryptop 99.9 3.6E-20 7.9E-25 177.7 20.5 294 38-346 1-307 (394)
13 PRK15132 tyrosine transporter 99.8 1.2E-18 2.5E-23 166.7 20.4 291 40-348 3-306 (403)
14 TIGR00814 stp serine transport 99.7 1.5E-15 3.2E-20 145.7 19.7 291 46-345 9-312 (397)
15 PRK13629 threonine/serine tran 99.7 2.4E-15 5.3E-20 143.4 18.6 294 47-345 26-347 (443)
16 PRK10655 potE putrescine trans 99.6 3.4E-13 7.5E-18 132.5 21.0 242 36-294 4-247 (438)
17 PRK10435 cadB lysine/cadaverin 99.5 2.7E-13 5.8E-18 133.0 18.5 246 35-296 2-247 (435)
18 TIGR00906 2A0303 cationic amin 99.5 1E-12 2.2E-17 132.2 21.6 300 35-344 25-344 (557)
19 TIGR00909 2A0306 amino acid tr 99.5 2.3E-12 5.1E-17 126.3 20.5 293 37-344 2-309 (429)
20 KOG1287 Amino acid transporter 99.5 4.2E-13 9.2E-18 128.3 14.3 289 35-343 9-316 (479)
21 TIGR00905 2A0302 transporter, 99.5 2.6E-12 5.6E-17 127.4 20.2 295 35-343 4-312 (473)
22 PRK10644 arginine:agmatin anti 99.5 2.5E-12 5.5E-17 126.5 19.6 245 35-296 5-251 (445)
23 TIGR01773 GABAperm gamma-amino 99.5 3.9E-12 8.5E-17 125.5 20.9 291 35-344 9-316 (452)
24 TIGR00930 2a30 K-Cl cotranspor 99.5 2.9E-12 6.4E-17 134.9 20.7 250 35-294 73-338 (953)
25 PRK11021 putative transporter; 99.5 7.6E-12 1.6E-16 121.9 22.0 230 40-290 1-231 (410)
26 TIGR00912 2A0309 spore germina 99.5 2.3E-12 5E-17 123.3 17.2 287 38-348 1-300 (359)
27 PRK10249 phenylalanine transpo 99.5 3.7E-12 8E-17 125.7 18.9 290 35-343 18-322 (458)
28 PRK11387 S-methylmethionine tr 99.5 4.6E-12 9.9E-17 125.6 19.5 292 35-344 11-320 (471)
29 PRK11049 D-alanine/D-serine/gl 99.4 7.3E-12 1.6E-16 124.0 18.6 291 35-344 17-325 (469)
30 PRK15049 L-asparagine permease 99.4 1.6E-11 3.5E-16 122.2 20.2 292 36-344 26-334 (499)
31 PRK10836 lysine transporter; P 99.4 3E-11 6.5E-16 120.3 20.3 292 35-344 12-327 (489)
32 PRK10238 aromatic amino acid t 99.4 3.5E-11 7.5E-16 118.7 18.9 291 35-344 9-314 (456)
33 TIGR00908 2A0305 ethanolamine 99.4 5.8E-11 1.2E-15 116.9 20.2 239 35-290 4-245 (442)
34 PRK10746 putative transport pr 99.4 5E-11 1.1E-15 117.7 19.5 292 35-344 7-314 (461)
35 TIGR03810 arg_ornith_anti argi 99.4 6.1E-11 1.3E-15 117.5 19.9 292 38-343 1-308 (468)
36 PRK10580 proY putative proline 99.4 9E-11 2E-15 115.9 20.8 239 35-291 6-254 (457)
37 TIGR00911 2A0308 L-type amino 99.3 7.7E-11 1.7E-15 117.8 20.0 250 34-295 38-294 (501)
38 PRK11357 frlA putative fructos 99.3 5.8E-11 1.3E-15 116.9 18.4 241 35-292 5-251 (445)
39 TIGR00913 2A0310 amino acid pe 99.3 1.7E-10 3.6E-15 114.8 19.1 289 37-343 1-319 (478)
40 PF03845 Spore_permease: Spore 99.3 1.7E-10 3.7E-15 108.6 18.1 285 39-348 1-296 (320)
41 COG1113 AnsP Gamma-aminobutyra 99.3 2.7E-11 5.9E-16 114.3 11.1 294 35-346 10-319 (462)
42 PF13520 AA_permease_2: Amino 99.3 7.2E-11 1.6E-15 115.6 14.4 292 40-347 1-306 (426)
43 PRK10197 gamma-aminobutyrate t 99.3 2.9E-10 6.3E-15 111.9 17.9 277 49-344 3-296 (446)
44 COG0531 PotE Amino acid transp 99.2 1.2E-09 2.7E-14 108.1 18.8 295 35-343 9-316 (466)
45 KOG1286 Amino acid transporter 99.1 7.9E-10 1.7E-14 109.8 14.5 305 34-347 26-354 (554)
46 COG0833 LysP Amino acid transp 99.1 5.9E-09 1.3E-13 100.7 18.7 297 35-347 41-359 (541)
47 TIGR03428 ureacarb_perm permea 99.0 8.7E-08 1.9E-12 95.2 23.5 253 35-296 10-273 (475)
48 PF00324 AA_permease: Amino ac 98.9 6.4E-09 1.4E-13 103.4 10.9 283 49-343 6-318 (478)
49 TIGR00907 2A0304 amino acid pe 98.9 3.2E-07 6.9E-12 91.4 22.9 254 35-296 9-277 (482)
50 TIGR00910 2A0307_GadC glutamat 98.7 6.8E-07 1.5E-11 89.4 17.8 238 36-290 2-248 (507)
51 KOG3832 Predicted amino acid t 98.7 6E-08 1.3E-12 81.7 8.1 210 41-257 13-299 (319)
52 PRK15238 inner membrane transp 98.7 7E-07 1.5E-11 89.2 16.8 239 36-292 5-267 (496)
53 TIGR03813 put_Glu_GABA_T putat 98.6 3.3E-06 7.2E-11 83.9 19.2 246 38-296 1-254 (474)
54 TIGR00800 ncs1 NCS1 nucleoside 98.2 0.00041 9E-09 68.3 21.8 300 37-347 11-330 (442)
55 KOG1289 Amino acid transporter 98.1 9.9E-05 2.2E-09 71.9 15.0 252 37-297 47-313 (550)
56 PRK11375 allantoin permease; P 97.8 0.009 1.9E-07 59.5 23.5 264 71-347 60-344 (484)
57 COG3949 Uncharacterized membra 97.7 0.0022 4.7E-08 58.9 15.2 137 46-196 9-148 (349)
58 PF02554 CstA: Carbon starvati 97.4 0.0037 8.1E-08 58.5 12.9 150 38-199 50-199 (376)
59 TIGR02119 panF sodium/pantothe 97.2 0.084 1.8E-06 52.5 21.7 151 35-199 37-193 (471)
60 TIGR00813 sss transporter, SSS 97.2 0.034 7.4E-07 54.2 18.6 150 37-199 2-152 (407)
61 PRK09442 panF sodium/panthothe 97.2 0.05 1.1E-06 54.3 20.0 152 35-199 38-194 (483)
62 TIGR02358 thia_cytX probable h 97.2 0.062 1.4E-06 51.9 20.0 269 43-345 8-277 (386)
63 COG1953 FUI1 Cytosine/uracil/t 97.1 0.22 4.7E-06 48.8 22.3 240 98-349 96-360 (497)
64 COG0591 PutP Na+/proline sympo 97.1 0.13 2.8E-06 51.4 21.7 154 35-198 35-190 (493)
65 KOG1288 Amino acid transporter 96.8 0.053 1.2E-06 54.4 15.5 269 59-344 88-402 (945)
66 COG1457 CodB Purine-cytosine p 96.7 0.19 4.2E-06 48.8 18.1 219 105-347 82-304 (442)
67 TIGR00835 agcS amino acid carr 96.7 0.035 7.6E-07 53.8 12.9 147 38-199 45-201 (425)
68 PRK12488 acetate permease; Pro 96.6 0.61 1.3E-05 47.3 22.3 151 35-199 64-216 (549)
69 TIGR00796 livcs branched-chain 96.6 0.074 1.6E-06 51.0 14.3 268 47-344 2-300 (378)
70 PRK11017 codB cytosine permeas 96.4 0.39 8.5E-06 46.7 18.8 217 103-344 70-287 (404)
71 KOG2083 Na+/K+ symporter [Inor 96.4 0.012 2.6E-07 58.0 7.8 229 39-288 29-275 (643)
72 PF02133 Transp_cyt_pur: Perme 96.3 0.014 3.1E-07 57.4 8.4 295 36-345 5-316 (440)
73 TIGR03648 Na_symport_lg probab 96.3 1.2 2.5E-05 45.4 22.0 151 35-198 29-180 (552)
74 PRK09395 actP acetate permease 96.2 0.42 9.1E-06 48.6 18.0 152 35-199 66-218 (551)
75 PF00474 SSF: Sodium:solute sy 96.1 0.08 1.7E-06 51.5 12.1 151 36-199 4-156 (406)
76 PRK15015 carbon starvation pro 96.0 0.056 1.2E-06 54.3 10.5 143 43-198 86-230 (701)
77 TIGR02121 Na_Pro_sym sodium/pr 96.0 1.9 4.1E-05 43.1 22.1 154 35-199 33-192 (487)
78 TIGR02711 symport_actP cation/ 95.7 0.78 1.7E-05 46.6 17.4 150 35-198 64-215 (549)
79 PRK15419 proline:sodium sympor 95.6 2.8 6.1E-05 42.1 21.6 153 35-199 37-196 (502)
80 PRK10484 putative transporter; 95.4 1.5 3.2E-05 44.3 18.5 154 35-199 35-197 (523)
81 COG1966 CstA Carbon starvation 95.2 0.15 3.2E-06 50.2 9.8 103 39-145 51-154 (575)
82 COG0733 Na+-dependent transpor 94.5 0.95 2.1E-05 43.8 13.1 244 37-292 6-270 (439)
83 PF05525 Branch_AA_trans: Bran 94.2 1.1 2.3E-05 43.7 13.1 288 39-345 2-307 (427)
84 PF01566 Nramp: Natural resist 94.2 1.3 2.9E-05 42.3 13.8 81 105-195 43-125 (358)
85 PF05525 Branch_AA_trans: Bran 92.9 0.31 6.6E-06 47.4 6.9 76 104-189 261-336 (427)
86 TIGR00796 livcs branched-chain 92.6 0.29 6.3E-06 47.0 6.3 79 103-191 254-332 (378)
87 PF01235 Na_Ala_symp: Sodium:a 91.9 9.5 0.00021 37.1 15.6 84 35-119 14-103 (416)
88 PF00209 SNF: Sodium:neurotran 91.1 9.2 0.0002 38.6 15.5 31 40-70 5-36 (523)
89 COG4147 DhlC Predicted symport 90.0 6.4 0.00014 38.5 12.3 180 103-294 103-294 (529)
90 PRK15433 branched-chain amino 89.8 7.1 0.00015 38.2 12.7 276 41-345 9-311 (439)
91 KOG2082 K+/Cl- cotransporter K 89.8 1 2.2E-05 46.1 7.0 102 43-148 118-222 (1075)
92 COG1914 MntH Mn2+ and Fe2+ tra 89.0 13 0.00029 36.2 13.9 137 39-191 16-154 (416)
93 PHA02764 hypothetical protein; 88.1 1.8 3.8E-05 40.0 6.8 91 36-131 10-103 (399)
94 COG1114 BrnQ Branched-chain am 85.5 3.5 7.6E-05 39.6 7.5 120 49-179 207-329 (431)
95 KOG2466 Uridine permease/thiam 85.3 30 0.00065 34.1 13.7 303 26-348 41-379 (572)
96 KOG3660 Sodium-neurotransmitte 81.3 65 0.0014 33.3 15.1 53 41-93 39-96 (629)
97 PRK15433 branched-chain amino 72.3 10 0.00022 37.2 6.3 102 65-180 228-331 (439)
98 PF02028 BCCT: BCCT family tra 72.3 80 0.0017 31.6 12.7 93 106-201 164-257 (485)
99 COG1114 BrnQ Branched-chain am 68.5 1.2E+02 0.0026 29.5 13.1 75 271-345 228-309 (431)
100 PRK00701 manganese transport p 63.4 1.2E+02 0.0027 29.8 12.0 40 105-145 95-134 (439)
101 PRK13183 psbN photosystem II r 56.1 13 0.00029 23.6 2.4 30 271-300 6-35 (46)
102 KOG3659 Sodium-neurotransmitte 55.4 2.5E+02 0.0054 28.8 12.3 89 40-133 82-175 (629)
103 CHL00020 psbN photosystem II p 54.8 12 0.00025 23.5 2.0 29 272-300 4-32 (43)
104 PRK09950 putative transporter; 54.8 1.6E+02 0.0035 29.6 11.1 99 103-203 166-269 (506)
105 PF02468 PsbN: Photosystem II 54.2 16 0.00034 23.0 2.5 29 272-300 4-32 (43)
106 PF05915 DUF872: Eukaryotic pr 53.2 66 0.0014 25.2 6.5 27 39-65 38-64 (115)
107 COG1292 BetT Choline-glycine b 50.8 81 0.0018 31.7 8.1 91 106-199 177-268 (537)
108 PLN02680 carbon-monoxide oxyge 48.9 1.3E+02 0.0027 26.9 8.3 69 266-336 75-143 (232)
109 KOG1289 Amino acid transporter 47.5 2.5E+02 0.0053 28.4 10.9 47 105-152 326-372 (550)
110 COG4145 PanF Na+/panthothenate 46.8 2.8E+02 0.006 26.8 14.8 146 36-192 37-185 (473)
111 cd08765 Cyt_b561_CYBRD1 Verteb 45.2 70 0.0015 26.4 5.8 69 266-336 43-111 (153)
112 PRK09928 choline transport pro 44.9 95 0.0021 32.3 7.9 164 38-203 91-276 (679)
113 PRK03356 L-carnitine/gamma-but 44.6 3.2E+02 0.007 27.5 11.4 95 105-201 170-270 (504)
114 KOG2349 Na+:iodide/myo-inosito 44.2 79 0.0017 32.2 7.1 240 35-295 42-301 (585)
115 TIGR00906 2A0303 cationic amin 39.4 4.3E+02 0.0094 26.9 12.8 18 281-298 536-553 (557)
116 COG1115 AlsT Na+/alanine sympo 38.5 4E+02 0.0087 26.3 16.7 151 35-198 58-217 (452)
117 TIGR01197 nramp NRAMP (natural 35.2 4.3E+02 0.0092 25.6 12.5 38 105-143 65-102 (390)
118 TIGR00842 bcct choline/carniti 34.7 1.4E+02 0.0031 29.5 7.2 95 103-199 119-218 (453)
119 cd08766 Cyt_b561_ACYB-1_like P 30.6 1.1E+02 0.0023 25.1 4.7 67 268-336 38-104 (144)
120 cd08763 Cyt_b561_CYB561 Verteb 27.5 1.7E+02 0.0037 23.9 5.4 67 268-336 38-104 (143)
121 TIGR00907 2A0304 amino acid pe 27.3 6.1E+02 0.013 25.0 12.3 48 105-152 290-337 (482)
122 TIGR00909 2A0306 amino acid tr 26.9 3.9E+02 0.0084 25.8 8.9 47 105-152 265-311 (429)
123 KOG2466 Uridine permease/thiam 25.8 3.3E+02 0.0072 27.2 7.7 163 115-288 339-513 (572)
124 cd08762 Cyt_b561_CYBASC3 Verte 25.0 2.1E+02 0.0044 24.4 5.5 67 268-336 68-134 (179)
125 PF04911 ATP-synt_J: ATP synth 24.5 31 0.00066 22.9 0.4 40 229-268 9-48 (54)
126 cd08764 Cyt_b561_CG1275_like N 22.9 1.8E+02 0.0039 25.6 5.0 68 269-336 56-123 (214)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-46 Score=358.57 Aligned_cols=342 Identities=45% Similarity=0.811 Sum_probs=294.3
Q ss_pred hcccccccccccccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhc---CC
Q 016636 24 KQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMV---PG 100 (385)
Q Consensus 24 ~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~---~~ 100 (385)
+..++++|++..++|+.|++++.++.++.++|.|+|++|||+++.||+.|+++++..++++.||..+|.+|.+.+ ++
T Consensus 22 ~~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~ 101 (437)
T KOG1303|consen 22 RKSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG 101 (437)
T ss_pred cccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 566777788888889999999999999999999999999999999999999999999999999999999987643 44
Q ss_pred cccccHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCC
Q 016636 101 KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 180 (385)
Q Consensus 101 ~~~~~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 180 (385)
+++++|.|+++++||++. ++++.+++.+.++++|+.|.+..+|++..+.+......+ ..+.+.|++++.++.+|++++
T Consensus 102 ~r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-~l~~~~f~iif~~i~~~~s~l 179 (437)
T KOG1303|consen 102 KRRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-SLDKQYFIIIFGLIVLPLSQL 179 (437)
T ss_pred ccCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cccceehhhhHHHHHHHHHHC
Confidence 456789999999999865 899999999999999999999999999999999864432 344678999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHhheeeeeeeecCCC-CcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCC
Q 016636 181 PNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQP-DVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS 259 (385)
Q Consensus 181 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~ 259 (385)
++++.+++.|..+.++++.+..+.+..+..++... .+..++...... ... ++++|++.|+|.+|.++|+|+++|
T Consensus 180 p~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~--f~a~g~iaFaf~gH~v~peIq~tM-- 254 (437)
T KOG1303|consen 180 PNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTI-PTV--FTALGIIAFAYGGHAVLPEIQHTM-- 254 (437)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCC-cch--hhhhhheeeeecCCeeeeehHhhc--
Confidence 99999999999999999888877777777766443 222232221111 111 899999999999999999999999
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHH
Q 016636 260 TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM 339 (385)
Q Consensus 260 ~~~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~ 339 (385)
|+|++ ++|++..+..+++.+|+..++.||++|||++++|++.|+.++.|....+++++.+|++.++.++..|+.+.
T Consensus 255 --k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~ 330 (437)
T KOG1303|consen 255 --KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDV 330 (437)
T ss_pred --CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHH
Confidence 77887 77999999999999999999999999999999999999976689999999999999999999999999999
Q ss_pred HHHHHhhhcC-CC-Ccchhhhheehhhh------hhchhHHHHHH
Q 016636 340 IETLLVKKLN-FS-PTRLLRFVVRNLYV------GKHSPLHCHVI 376 (385)
Q Consensus 340 l~~~~~~~~~-~~-~~~~~r~~~r~~~v------~~~~p~~~~~~ 376 (385)
+|++...+++ .+ +...+|.+.|+.++ +..+|+++.+.
T Consensus 331 ~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~ 375 (437)
T KOG1303|consen 331 VEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLL 375 (437)
T ss_pred HHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHH
Confidence 9999986665 22 34567888887654 66778877765
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.7e-45 Score=360.92 Aligned_cols=330 Identities=18% Similarity=0.217 Sum_probs=259.0
Q ss_pred CCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCcc
Q 016636 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (385)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~ 117 (385)
+++|..++++|++|+++|+|+|++|++|+++||+.|++++++++.++.|+.+++.++.++ .+ ..+|+|++++++||
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~--~~sY~~la~~~~G~- 133 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADK-TN--IRTYEGVARVLLGP- 133 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC--CCCHHHHHHHHhCH-
Confidence 356779999999999999999999999999999999999999999999999999998773 33 34999999999996
Q ss_pred ccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCC---CccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 016636 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP---CKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (385)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~---~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (385)
++++++++++.+.++|+|++|+++.+|.++.+++.....+ ....++..+.++.+++++|++++|++++++++|.+++
T Consensus 134 ~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~ 213 (467)
T PTZ00206 134 WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAV 213 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHH
Confidence 5779999999999999999999999999998876432110 0112334455566778899999999999999999999
Q ss_pred HHHHHHHhheeeeeeeecCCCCcc---ccccc---ccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCC
Q 016636 195 VMSLSYSTIAWSASVRKGVQPDVA---YGYKA---KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (385)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~ 268 (385)
.+.+...+.+++....++..++.+ .+... ........+.+.++|+++|||.||.++|++++|| ++|+.++
T Consensus 214 ~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M----~~~t~~~ 289 (467)
T PTZ00206 214 SFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDM----TNRSVGK 289 (467)
T ss_pred HHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhh----cccchhH
Confidence 866655554444444443322111 01000 0001122468899999999999999999999999 7777778
Q ss_pred CchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcC-CCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHhhh
Q 016636 269 MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSL-EKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 347 (385)
Q Consensus 269 ~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~-~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~ 347 (385)
+.++...++.+++++|.++|++||++||+++++|+++|+ |.+|....++++++.+.++++||++.+|+|+.+++.+..+
T Consensus 290 ~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~ 369 (467)
T PTZ00206 290 FVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWD 369 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCC
Confidence 889999999999999999999999999999999999999 4567788889999999999999999999999999987443
Q ss_pred cCCCCcchhhhheeh------hhhhhchhHHHHHH
Q 016636 348 LNFSPTRLLRFVVRN------LYVGKHSPLHCHVI 376 (385)
Q Consensus 348 ~~~~~~~~~r~~~r~------~~v~~~~p~~~~~~ 376 (385)
.+ +...++|...+. .++++.+|.++.++
T Consensus 370 ~~-~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl 403 (467)
T PTZ00206 370 AR-KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVL 403 (467)
T ss_pred cc-cCchhhHHHHHHHHHHHHHHHHhccCCHHHhh
Confidence 32 223344533333 33456666555554
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-43 Score=332.55 Aligned_cols=317 Identities=21% Similarity=0.296 Sum_probs=270.7
Q ss_pred cCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhc---CCcccccHHHHHHHh
Q 016636 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMV---PGKRFDRYHELGQHA 113 (385)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~---~~~~~~~y~~i~~~~ 113 (385)
++..|..++..++.|.++|+|+|++|+||+++|++.|.+..++.+.++.|+++.+.+|..+. .+....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999997532 222245677776655
Q ss_pred c----------CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCc
Q 016636 114 F----------GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 183 (385)
Q Consensus 114 ~----------G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l 183 (385)
+ |+ ++|++++++++++++|.|++|+++++++++++.+... ...++.+.++.+.....+|++++|++
T Consensus 124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~---~~~~s~~~~i~~~~~~~lll~~Ir~L 199 (449)
T KOG1304|consen 124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS---PGVLSVRLYILIQLPPLLLLNLIRNL 199 (449)
T ss_pred HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC---CCCccHHHHHHHHHHHHHHHHHHHhh
Confidence 4 43 5678999999999999999999999999999998422 34678888999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCC
Q 016636 184 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (385)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~ 263 (385)
+.++.+|.++.++.++.++++..+.+.... +.++.....++.++...+|+.+|||+|+..+.|++++| |+
T Consensus 200 k~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M----k~ 269 (449)
T KOG1304|consen 200 KILSPFSLFANVFILVGLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM----KK 269 (449)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhcc----cC
Confidence 999999999999888877766666554322 11122234468899999999999999999999999999 88
Q ss_pred CCCCCCc---hhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHH
Q 016636 264 PSKGPMW---RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMI 340 (385)
Q Consensus 264 p~~~~~~---~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l 340 (385)
|++ ++ +++..++.+++++|..+|++||+.|||++++.|++|+|+ +|+...+++++++..+++||+++||+.+++
T Consensus 270 P~~--F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi 346 (449)
T KOG1304|consen 270 PQK--FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEII 346 (449)
T ss_pred hhh--cCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHH
Confidence 887 55 888899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCcchhhhheehhhhhhchh
Q 016636 341 ETLLVKKLNFSPTRLLRFVVRNLYVGKHSP 370 (385)
Q Consensus 341 ~~~~~~~~~~~~~~~~r~~~r~~~v~~~~p 370 (385)
|+.+.++-+..++++....+|+.+|.+++.
T Consensus 347 ~~~i~~k~~~~~~~~~~~~~R~~lVllt~~ 376 (449)
T KOG1304|consen 347 EPGIRKKFSENRKKLLEYALRVFLVLLTFL 376 (449)
T ss_pred HHhHHHhcCcchhHHHHHHHHHHHHHHHHH
Confidence 999877765444566778888877655443
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=7.2e-45 Score=353.86 Aligned_cols=325 Identities=29% Similarity=0.496 Sum_probs=273.2
Q ss_pred CCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcC-CcccccHHHHHHHhcCc
Q 016636 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP-GKRFDRYHELGQHAFGE 116 (385)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~-~~~~~~y~~i~~~~~G~ 116 (385)
+|.|+++++++++|+++|+|+|++|++|+++||+.|++++++++.++.+|.+++.|+.+..+ +.+..+|+|++++++||
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~ 80 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP 80 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence 58899999999999999999999999999999999999999999999999999999987543 33467999999999998
Q ss_pred cccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHH
Q 016636 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVM 196 (385)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 196 (385)
+ +++++++++.+.++|.+++|++..+|.++.+.+...+. ...+++.+.++..++++|++++|+++.+++.|.+++++
T Consensus 81 ~-~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~--~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~ 157 (409)
T PF01490_consen 81 K-GKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD--LFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFS 157 (409)
T ss_pred c-ccccccchheeccccccceeEEEeeeeeeccccccccc--ccccccccccccccccccccccchhhHHHHHhhhhhhc
Confidence 6 46999999999999999999999999999998886532 34677888888899999999999999999999999997
Q ss_pred HHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCC-CCCchhhhH
Q 016636 197 SLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK-GPMWRGVVV 275 (385)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~-~~~~~~~~~ 275 (385)
.+..+.+.+.........++.+...+......++.+++.++++++|||.||+++|++++|| |+|++ ++++++...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m----~~~~~~~~~~~~~~~ 233 (409)
T PF01490_consen 158 IFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEM----KDPSKFKKMKKVLSI 233 (409)
T ss_pred cceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeec----cCCccccccceeeee
Confidence 6653222222222222222222222222335577899999999999999999999999999 67777 567799999
Q ss_pred HHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHhhh--------
Q 016636 276 AYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK-------- 347 (385)
Q Consensus 276 s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~-------- 347 (385)
++.+++++|..+|+.||++||+++++|+++|++++++...++++++.++++.++|++.+|+++.+++.+.++
T Consensus 234 s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~ 313 (409)
T PF01490_consen 234 SMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSP 313 (409)
T ss_pred hhhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccccccc
Confidence 999999999999999999999999999999999877889999999999999999999999999999999763
Q ss_pred cCCCCcchhhhheehhhhhhch
Q 016636 348 LNFSPTRLLRFVVRNLYVGKHS 369 (385)
Q Consensus 348 ~~~~~~~~~r~~~r~~~v~~~~ 369 (385)
.+...++++|..+|+.++..+.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~ 335 (409)
T PF01490_consen 314 KNTPSSRWLRYLIRIILVLLSF 335 (409)
T ss_pred ccccccceeeeeeecchhhhhh
Confidence 1223346778888876654433
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=4.6e-37 Score=300.18 Aligned_cols=317 Identities=16% Similarity=0.221 Sum_probs=251.7
Q ss_pred cCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchh----cCC--c--c--cccH
Q 016636 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM----VPG--K--R--FDRY 106 (385)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~----~~~--~--~--~~~y 106 (385)
.++.+..++.+++++..+|+|+|+||++|++.||+.|++.+++.++++.||.+++.++... ++. . + ..+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 4578889999999999999999999999999999999999999999999999999986421 111 1 1 1368
Q ss_pred HHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhh
Q 016636 107 HELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAI 186 (385)
Q Consensus 107 ~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l 186 (385)
.|+++..+||+++ .+......+.+++.|+.|++..++.+..+- ..++.+.|++++.++.+|++++|+++++
T Consensus 123 ~e~~~~~~G~~~~-~~~~~~~~v~l~~~~v~~li~~~~~~~~l~--------~~~~~~~~~~i~~~v~~~~~~i~sl~~l 193 (473)
T PLN03074 123 FEVLDGLLGPYWK-NVGLAFNCTFLLFGSVIQLIACASNIYYIN--------DNLDKRTWTYIFGACCATTVFIPSFHNY 193 (473)
T ss_pred HHHHHHhcChhHH-HHHHHHHhhhhHHHHHHHHHHHhhhhhhhC--------CCcCCCeEEeehHHHHHHHHHccCHHHH
Confidence 9999999998655 777888889999999999998777655441 2456788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCC
Q 016636 187 AGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (385)
Q Consensus 187 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~ 266 (385)
+++|.+|+.+++...+.+++.....+..++..+ ..+.++..++.++++++|+|+||..+|++++|| +||+|
T Consensus 194 ~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~-----~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M----~~P~~ 264 (473)
T PLN03074 194 RIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKH-----SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAM----WKPQK 264 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC-----CCchhHHHHHHHHHHHHHHhcccccHHHHHHhc----cChhc
Confidence 999999988655432222222232222222111 123466778889999999999999999999999 88988
Q ss_pred CCCchhhhHHHHHHHHHHHhHHhHhhhccCCcch--hhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH
Q 016636 267 GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE--DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 344 (385)
Q Consensus 267 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~--~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~ 344 (385)
++ ++..++....+++|+.+|+.||+.|||+++ ++.+.|+|++. ...+++++++++.+.+||++++|+.+.+|+.+
T Consensus 265 F~--~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~-~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~ 341 (473)
T PLN03074 265 FK--YIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRSG-WRDAAVILMLIHQFITFGFACTPLYFVWEKAI 341 (473)
T ss_pred cc--chHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCch-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 55 888899999999999999999999999976 46677788644 47899999999999999999999999999987
Q ss_pred hhhcCCCCcchhhhheehhhh------hhchhHHHHHH
Q 016636 345 VKKLNFSPTRLLRFVVRNLYV------GKHSPLHCHVI 376 (385)
Q Consensus 345 ~~~~~~~~~~~~r~~~r~~~v------~~~~p~~~~~~ 376 (385)
..+. ......|+.+|+.++ +..+|.++.++
T Consensus 342 ~~~~--~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~ll 377 (473)
T PLN03074 342 GVHD--TKSICLRALARLPVVVPIWFLAIIFPFFGPIN 377 (473)
T ss_pred cccc--cccHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 5432 234566888887654 66777777766
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-36 Score=284.79 Aligned_cols=318 Identities=22% Similarity=0.331 Sum_probs=255.3
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcC
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G 115 (385)
.+++.|..++++++.|+++|+|++++|++|++.|++.|++++.+++.++.++.+++.++.+. .+++ +|++++++.+|
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~-~~~~--ty~~l~~~~~g 78 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKK-SGER--TYSSLGDLIFG 78 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhh-cCCC--CHHHHHHHHcC
Confidence 35678999999999999999999999999999999999999999999999999999999874 3433 99999999999
Q ss_pred ccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCc---cccchh-hhHHHHHHHHHhhCCCCchhhHHHHH
Q 016636 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCK---EIKLSY-FIMIFASVHFVLSHLPNFNAIAGVSL 191 (385)
Q Consensus 116 ~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~---~~~~~~-~~~i~~~i~~pl~~~~~l~~l~~~s~ 191 (385)
+ .|+....+.......| |++|+++++|.++.+.......+.. +.+++. +++....+++|+++.|+++++++.|.
T Consensus 79 ~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~ 156 (411)
T KOG1305|consen 79 K-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSA 156 (411)
T ss_pred C-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHH
Confidence 6 4655555555555555 6999999999999777665532211 124444 57777888999999999999999999
Q ss_pred HHHHHHHHHHhheeeeeeeecC-CCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCc
Q 016636 192 AAAVMSLSYSTIAWSASVRKGV-QPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 270 (385)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~ 270 (385)
++....+...+++++..+.... .++..+. ......+++.+.++++++|+|.||+|+.++++|| ++|+++++.
T Consensus 157 ~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El----~~~s~~~i~ 229 (411)
T KOG1305|consen 157 LSLASVVYFVVLVVYKYFQGPCALGRLSYL---VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNEL----KDRSVKKIQ 229 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCcccc---cCCcchhhhhhhhhhhhheeeeccccceeeeeee----eCchHHHHH
Confidence 9999777766665555554221 0111111 1111233689999999999999999999999999 889999999
Q ss_pred hhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHH------HHHHHHHHHHHHHHhhhccccchHHHHHHHH
Q 016636 271 RGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWL------IVMANFFVVVHVIGSYQIYAMPVFDMIETLL 344 (385)
Q Consensus 271 ~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~------~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~ 344 (385)
++...+...+.++|..+|+.||++|||++.+|++.++++.+.. ...++..+.++.+..+|+..+|+|..+...+
T Consensus 230 ~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~ 309 (411)
T KOG1305|consen 230 RVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELL 309 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence 9999999999999999999999999999999999999865443 4799999999999999999999999999988
Q ss_pred hhhcCC--CCcchhhhheehhhh
Q 016636 345 VKKLNF--SPTRLLRFVVRNLYV 365 (385)
Q Consensus 345 ~~~~~~--~~~~~~r~~~r~~~v 365 (385)
.+..+. ..+..++.++...++
T Consensus 310 ~~~~~~~~~~s~~r~~~itl~ll 332 (411)
T KOG1305|consen 310 FPYQPGLTSFSGKRHFVITLLLL 332 (411)
T ss_pred cccCCCCCCccceehhHHHHHHH
Confidence 766542 233344444444444
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.98 E-value=4.8e-33 Score=247.44 Aligned_cols=324 Identities=19% Similarity=0.265 Sum_probs=266.4
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcC--Cc---ccccHHH
Q 016636 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP--GK---RFDRYHE 108 (385)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~--~~---~~~~y~~ 108 (385)
++...|.+-+|+.+|..|++-|.=|++||+|....||. ++..++..+.++.||..+|++|..... ++ .+++|-+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHH
Confidence 44556899999999999999999999999999999986 899999999999999999999974221 11 2579999
Q ss_pred HHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHH
Q 016636 109 LGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (385)
Q Consensus 109 i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 188 (385)
+++.+++|+.|-+.+.+.+++.++..|+.|.++.+|.+..-++.. ..++..|+++..+.++|++++|+++..+.
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~------svd~~sWm~i~~a~LLpc~FLk~Lk~VS~ 263 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL------SVDKASWMMITSASLLPCSFLKDLKIVSR 263 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC------CccccchhhhhhHHHhhhHHHHHHHHHHH
Confidence 999999999886788899999999999999999999988876653 46678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCC
Q 016636 189 VSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (385)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~ 268 (385)
.|.++.+.-++.=++++.+|.-.. .++.+.......+...+...+|+++|+|..|..+|++...| ++|++++
T Consensus 264 lSf~ct~sH~viN~i~v~YCLs~~----~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM----~~ps~Fn 335 (524)
T KOG4303|consen 264 LSFFCTISHLVINLIMVLYCLSFV----SDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM----KNPSQFN 335 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----hhccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc----CChhHhe
Confidence 998888865555445556665321 12222222223355677888999999999999999999999 8899977
Q ss_pred CchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHhhhc
Q 016636 269 MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL 348 (385)
Q Consensus 269 ~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~ 348 (385)
..+-|+-+.+.++-..+|..||++|||.+++.|.+|+|+ .-.+.+++++.++.-+++||+-++.+.+.+|+-++.+.
T Consensus 336 --~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~-qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~ 412 (524)
T KOG4303|consen 336 --VMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN-QSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGY 412 (524)
T ss_pred --eeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc-cchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCC
Confidence 788899999999999999999999999999999999985 55789999999999999999999999999999877654
Q ss_pred CCC-------C----c-----chhhhheehhhhhhchhHHHHH
Q 016636 349 NFS-------P----T-----RLLRFVVRNLYVGKHSPLHCHV 375 (385)
Q Consensus 349 ~~~-------~----~-----~~~r~~~r~~~v~~~~p~~~~~ 375 (385)
++. + + ...-+++.+.++++.+|.+.-+
T Consensus 413 p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~L 455 (524)
T KOG4303|consen 413 PQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVEL 455 (524)
T ss_pred CCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHH
Confidence 321 1 0 1122445567778888876543
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.97 E-value=1.3e-29 Score=244.45 Aligned_cols=265 Identities=20% Similarity=0.225 Sum_probs=221.8
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
+..++.+.+++++++.++++|+|+|++|++++..|+..+++++++++..++++.+++.|+..+.++. +.++.+++++.+
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~-~~~~~~~~~~~~ 82 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG-KASITSLVEDYL 82 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-cccHHHHHHHHh
Confidence 4567788899999999999999999999999999999999999999999999999999998755543 259999999999
Q ss_pred CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 016636 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (385)
||+++ +++++.+.+.+++.+.+|.+..++.+++.+++....+. .+|..+.+++..++.++++.++...++..+.+..
T Consensus 83 G~~~~-~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~--~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~ 159 (415)
T COG0814 83 GKKGG-ILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNP--LPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVF 159 (415)
T ss_pred CcchH-HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCC--cchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 98755 99999999999999999999999999999998553211 6778888888888999999999999999999998
Q ss_pred HHHHHHHhheeeeeeeecCCCCcccccccccc-cchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhh
Q 016636 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTA-AGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGV 273 (385)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~ 273 (385)
......++......... +.+.....+.. +..+.....++|+++|||+||+++|++.+|| +++.+++.+|+.
T Consensus 160 ~~v~~~~~l~~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~----~~~~~~~~~k~~ 231 (415)
T COG0814 160 GKVIYLVLLVVYLIPHW----NPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYM----RKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHHhccc----CHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHh----ccchhHHHHHHH
Confidence 86665444333332211 11111111111 3577789999999999999999999999999 555554578999
Q ss_pred hHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCch
Q 016636 274 VVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPT 311 (385)
Q Consensus 274 ~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~ 311 (385)
..+..+..++|+.+++.+|..+|+.+.+|++++.++.+
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~ 269 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNI 269 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchH
Confidence 99999999999999999999999999999999997543
No 9
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.88 E-value=4e-21 Score=182.59 Aligned_cols=327 Identities=13% Similarity=0.142 Sum_probs=219.8
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcC
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G 115 (385)
.+||.+.+.+++.+.+++||+|+|++|.+.++.|+..+++++++++..+.+|..++.|+..+.++ ..++..++++.+|
T Consensus 5 ~~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~--g~~l~tma~~~LG 82 (415)
T PRK09664 5 AEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV--GSSFNTITKDLIG 82 (415)
T ss_pred hhhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHcC
Confidence 34555888899999999999999999999999999999999999999999999999998765544 3599999999999
Q ss_pred ccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 016636 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (385)
Q Consensus 116 ~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 195 (385)
|+ |+++.+++..+..++.+++|+...++.+++.++...+. +.++....+++.++.-+..+. .-+...+.+.+-+.
T Consensus 83 ~~-g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~---~i~~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~ 157 (415)
T PRK09664 83 NT-WNIISGITVAFVLYILTYAYISANGAIISETISMNLGY---HANPRIVGICTAIFVASVLWI-SSLAASRITSLFLG 157 (415)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccC---CCcHHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHH
Confidence 75 66999999999999999999999999999998763211 223333334444444444443 22444444444433
Q ss_pred HHHHHHhheeeeeeeecCCCCccccccccc-ccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhh
Q 016636 196 MSLSYSTIAWSASVRKGVQPDVAYGYKAKT-AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (385)
..++..+..+....-+. +.+.....+... ....+.....++|++++||+.|+++|++.+.++ +|++| .+|.+.
T Consensus 158 ~~ii~f~~~~~~l~~~i-~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~---~d~~~--~~kaIl 231 (415)
T PRK09664 158 LKIISFVIVFGSFFFQV-DYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYG---KRKDK--LIKSVV 231 (415)
T ss_pred HHHHHHHHHHHHHhhcc-cHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhC---ccHHH--HHHHHH
Confidence 22222211111111111 111000000000 000133577899999999999999999999984 34444 558899
Q ss_pred HHHHHHHHHHHhH--HhHh---------hhccCCcchh--hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 016636 275 VAYIVVALCYFPV--ALIG---------YWMFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (385)
Q Consensus 275 ~s~~~~~~~Y~~~--g~~g---------y~~fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~ 341 (385)
.+..+..++|+.- ++.| ...-|+++.+ ..+..-..+.+...+..++..+.+.+||--.....+|.+.
T Consensus 232 ~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~ 311 (415)
T PRK09664 232 FGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLA 311 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899653 2222 2234444444 2121123446778889999999999999999999999999
Q ss_pred HHHhhhcCCCCcchhhhheehhhhhhchhHHHHHHhhccc
Q 016636 342 TLLVKKLNFSPTRLLRFVVRNLYVGKHSPLHCHVILKQDF 381 (385)
Q Consensus 342 ~~~~~~~~~~~~~~~r~~~r~~~v~~~~p~~~~~~~~~~~ 381 (385)
+.+..+++.+.+ ..+.+++...|+...++.|.+|
T Consensus 312 D~~~~~~~~~~r------~~~~~ltflPPl~~al~~P~gF 345 (415)
T PRK09664 312 DLFKIDNSHGGR------FKTVLLTFLPPALLYLIFPNGF 345 (415)
T ss_pred HHhCCCCccccc------eeeehhhHhhhHHHHHHhhHHH
Confidence 998666432211 2224455555655555554443
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.88 E-value=6.8e-21 Score=181.19 Aligned_cols=326 Identities=14% Similarity=0.130 Sum_probs=223.2
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
.++++.+.+.+.+.+.+++||+|+|++|.+.++.|+..+++++++++..+.+|..++.|+..+.++ ..++..++++.+
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~--g~~~~tma~~~L 83 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI--GSSFDTITKDLL 83 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCHHHHHHHHc
Confidence 457789999999999999999999999999999999999999999999999999999998764444 359999999999
Q ss_pred CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 016636 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (385)
||+ |+++.+++..+..++.+++|+...++.+++.+++ .+. +.++..-.+++.++.-...+. ..+...+++.+-+
T Consensus 84 G~~-g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~~---~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~ 157 (414)
T PRK10483 84 GKG-WNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MSL---NVPARAAGFGFALLVAFVVWL-STKAVSRMTAIVL 157 (414)
T ss_pred ChH-HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cCC---CCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 976 6689999999999999999999999999999877 221 223344444444444444443 2344444444333
Q ss_pred HHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhh
Q 016636 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (385)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (385)
...++..+..+.. .....+.+...+.. ......+.....+.+++++||+.|+++|++.+.++ +|++ +.+|++.
T Consensus 158 ~~~i~~f~~~~~~-l~~~i~~~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~---~d~~--kir~~I~ 230 (414)
T PRK10483 158 GAKVITFFLTFGS-LLGHVQPATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYG---KDPK--TIVKCLV 230 (414)
T ss_pred HHHHHHHHHHHHH-HHhhcCHHHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhC---cCHH--HHHHHHH
Confidence 3222211111111 11111111111110 11122345678999999999999999999999984 3343 5679999
Q ss_pred HHHHHHHHHHHhHHhHhhhc-----------cCCcchh--hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 016636 275 VAYIVVALCYFPVALIGYWM-----------FGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (385)
Q Consensus 275 ~s~~~~~~~Y~~~g~~gy~~-----------fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~ 341 (385)
++..+..++|+..=...... -|++.+. +.+.+..++.+...+..++..+.+.+||--.....+|.+.
T Consensus 231 iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~ 310 (414)
T PRK10483 231 YGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLA 310 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999854333333 3333321 1222222334566788899999999999999999999999
Q ss_pred HHHhhhcCCCCcchhhhheehhhhhhchhHHHHHHhhccc
Q 016636 342 TLLVKKLNFSPTRLLRFVVRNLYVGKHSPLHCHVILKQDF 381 (385)
Q Consensus 342 ~~~~~~~~~~~~~~~r~~~r~~~v~~~~p~~~~~~~~~~~ 381 (385)
+.+..+++.+. | ..+.+++...|+...++.|.+|
T Consensus 311 D~~k~~~~~~~----r--~~~~~ltflPPl~~al~~P~~F 344 (414)
T PRK10483 311 DLFGFDDSAMG----R--FKTALLTFLPPVVGGLLFPNGF 344 (414)
T ss_pred HHhCCCCcccc----c--eeeehhhHhhHHHHHHHhHHHH
Confidence 99876643221 1 1234455555555555554443
No 11
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.86 E-value=7.1e-21 Score=183.49 Aligned_cols=288 Identities=15% Similarity=0.131 Sum_probs=211.1
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccccccchhH
Q 016636 46 AFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVP 125 (385)
Q Consensus 46 ~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~~~~~~~~ 125 (385)
+...+++++|+|++++|.++++.|...+++.+++.++++.++..++.|+..+.|+.+ ++.+++++.+||+.+ ++..+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~--~~~~~~~~~~G~~~g-~~~~~ 79 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGA--SFNTIAKDLLGKTGN-IIAGL 79 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHhCHHHH-HHHHH
Confidence 456789999999999999999999989999999999999999999999987666544 999999999998655 88899
Q ss_pred HHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHhhee
Q 016636 126 QQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAW 205 (385)
Q Consensus 126 ~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~ 205 (385)
...+.++..+++|....++++..+++..... ..++....+++.+++.++ ..+..+...+++.+.++..+..++..+
T Consensus 80 ~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 80 SLLFVLYILTYAYISGGGSILSRLIGEYFGF---PWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764422 123333333334344444 344667777888777775554333333
Q ss_pred eeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHH
Q 016636 206 SASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYF 285 (385)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~Y~ 285 (385)
+....+...++ ..+....+.++.++..+++...++|.+|.+++.+.+|+ +++ +++++|++.++..+++++|+
T Consensus 156 i~~~~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~----~~~-~k~i~raii~g~~i~~~lY~ 227 (381)
T TIGR00837 156 SGLLPHVKGDL---LLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYY----DGN-VKKVKKSILIGSAIALVLYI 227 (381)
T ss_pred HHHHhhccHHH---HhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHh----ccC-HHHHHHHHHHHHHHHHHHHH
Confidence 32222211111 11101112356688899999999999999999999998 545 55788999999999999999
Q ss_pred hHHhHhhhccCCcchhh-------------HhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHhhhc
Q 016636 286 PVALIGYWMFGNKVEDN-------------ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKL 348 (385)
Q Consensus 286 ~~g~~gy~~fG~~~~~~-------------il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~~ 348 (385)
++.+......+.+.-.+ ...+.-.+.+...+..++..+.++.++.-.....+|.+.+.+..++
T Consensus 228 l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~ 303 (381)
T TIGR00837 228 LWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDD 303 (381)
T ss_pred HHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 98877776665432221 1222112345677888899999999999999999999888887654
No 12
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.86 E-value=3.6e-20 Score=177.67 Aligned_cols=294 Identities=15% Similarity=0.248 Sum_probs=210.7
Q ss_pred CCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCcc
Q 016636 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (385)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~ 117 (385)
++.+.+++++.+.++++|+|+|++|.+.+..|..++++++++++..++++..++.|...+.++ ..++.+++++.+||+
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~--~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE--GSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCHHHHHHHHhChH
Confidence 466889999999999999999999999999999999999999999999999999998764444 459999999999986
Q ss_pred ccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHH
Q 016636 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (385)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 197 (385)
++++..+...+..++.+++|....++.++++++...+. +.++.....++.++...+... .-+...+++.+-+...
T Consensus 79 -g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~---~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~ 153 (394)
T PF03222_consen 79 -GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGT---DLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGM 153 (394)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC---CCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 44899999999999999999999999999999886421 233333333333333222222 2234444444444322
Q ss_pred HHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhhHHH
Q 016636 198 LSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAY 277 (385)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~ 277 (385)
+......+...+.+.. .+.-......+.++.....++|+.++||..|+++|++.+.+++ +++ +.+|++.++.
T Consensus 154 i~~~~~l~~~~~p~~~---~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~---d~~--k~~~ai~~Gs 225 (394)
T PF03222_consen 154 IISFIILVVYLIPHWN---PSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGG---DPK--KIRKAIIIGS 225 (394)
T ss_pred HHHHHHHHHHHhhhcC---HHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCc---cHH--HHHHHHHHHH
Confidence 2222221222221111 1111111123457888899999999999999999999999953 333 4669999999
Q ss_pred HHHHHHHHhHHhHhhh-----------ccCCcchh--hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH
Q 016636 278 IVVALCYFPVALIGYW-----------MFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 344 (385)
Q Consensus 278 ~~~~~~Y~~~g~~gy~-----------~fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~ 344 (385)
.+..++|+..-...-. .-+++..+ ..+.+...+.+...+..++..+.+.+||--.....+|.+.+.+
T Consensus 226 ~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~ 305 (394)
T PF03222_consen 226 LIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLF 305 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876433322 22222222 3444444456778889999999999999999999999999998
Q ss_pred hh
Q 016636 345 VK 346 (385)
Q Consensus 345 ~~ 346 (385)
..
T Consensus 306 k~ 307 (394)
T PF03222_consen 306 KL 307 (394)
T ss_pred cC
Confidence 66
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.82 E-value=1.2e-18 Score=166.67 Aligned_cols=291 Identities=14% Similarity=0.148 Sum_probs=204.9
Q ss_pred CchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCcccc
Q 016636 40 AKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLG 119 (385)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~~ 119 (385)
.+.+.+.+.+.++++|+|+|++|.+.+..|+.++++++++++.+..++.+++.|+..+.+. ..++.+++++.+||+++
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~--~~~~~~~a~~~LG~~g~ 80 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA--DTGLGTLAKRYLGRYGQ 80 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CCCHHHHHHHHhChHHH
Confidence 3778999999999999999999999999999999999999999999999999997653333 35899999999998754
Q ss_pred ccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHH
Q 016636 120 LYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLS 199 (385)
Q Consensus 120 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~ 199 (385)
++..+...+..+..+.+|....++.+.+.++.+.+.+ .+.....+++.++.....+. .-+...+++.+-+...++
T Consensus 81 -~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~---i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii 155 (403)
T PRK15132 81 -WLTGFSMMFLMYALTAAYISGAGELLASSISDWTGIS---MSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKII 155 (403)
T ss_pred -HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCC---CChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999988754321 22233344443333223332 324444444443332222
Q ss_pred HHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhhHHHHH
Q 016636 200 YSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIV 279 (385)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~ 279 (385)
..+..+.+..-+. +.+.-.+. +.+......++|++++||+.|+++|++.+.++ ++++ +.+|++..+..+
T Consensus 156 ~~~~~~~~l~p~~---~~~~L~~~---~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~---~~~~--~~~k~i~~Gs~i 224 (403)
T PRK15132 156 FLVVMLALMMPHI---HKVNLLTL---PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMG---GNIR--KLRWVFIIGSAI 224 (403)
T ss_pred HHHHHHHHHHHhc---CHHHHhcC---CccccHHHHHHHHHHHHhhCCcccHHHHHHhC---cCHH--HHHHHHHHHHHH
Confidence 1111111111111 11111100 00112378999999999999999999999984 2333 466999999999
Q ss_pred HHHHHHhHHhHhhhccCCcc----------hhhHhhcC---CCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHhh
Q 016636 280 VALCYFPVALIGYWMFGNKV----------EDNILLSL---EKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVK 346 (385)
Q Consensus 280 ~~~~Y~~~g~~gy~~fG~~~----------~~~il~~~---~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~ 346 (385)
..++|+..-......-+.+. .++++..+ .+..+...+..++..+.+.+||--.....+|.+.+.+..
T Consensus 225 ~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~ 304 (403)
T PRK15132 225 PLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR 304 (403)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999987666665554331 11222322 234567788899999999999999999999999999865
Q ss_pred hc
Q 016636 347 KL 348 (385)
Q Consensus 347 ~~ 348 (385)
++
T Consensus 305 ~~ 306 (403)
T PRK15132 305 RN 306 (403)
T ss_pred Cc
Confidence 44
No 14
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.69 E-value=1.5e-15 Score=145.66 Aligned_cols=291 Identities=10% Similarity=0.064 Sum_probs=204.1
Q ss_pred HHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccccccchhH
Q 016636 46 AFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVP 125 (385)
Q Consensus 46 ~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~~~~~~~~ 125 (385)
.+.+.++++|+|+|++|....+.||...++..++...+++++..++.|.....+. +..++.|++++.+||++| .+..+
T Consensus 9 ~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~-p~~~i~~~~~~~fGk~~G-~ii~~ 86 (397)
T TIGR00814 9 MLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN-PCEDITEVVEEHFGKNWG-ILITL 86 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHcCHHHH-HHHHH
Confidence 4789999999999999999999999988888888888889999999997432222 134899999999999877 78889
Q ss_pred HHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHhhee
Q 016636 126 QQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAW 205 (385)
Q Consensus 126 ~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~ 205 (385)
...+..+..+.+|....++.+.+.+......+. ..+....+..++++-.......+.+.+++.+-+...++..+...
T Consensus 87 lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~---p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~ 163 (397)
T TIGR00814 87 LYFFAIYPILLIYSVAITNDSASFLVNQLGTAP---PLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLS 163 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988877542211 11222222233332333445677777777777654443333322
Q ss_pred eeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCC--CCCCchhhhHHHHHHHHH
Q 016636 206 SASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS--KGPMWRGVVVAYIVVALC 283 (385)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~--~~~~~~~~~~s~~~~~~~ 283 (385)
.+...+. +.+.-.+.+.....+.++..+.++.++||.+|+++|+...+.|+..++|+ ++|.+|++..+..+..++
T Consensus 164 ~~lip~~---~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~ 240 (397)
T TIGR00814 164 LYLIPHW---NGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVAT 240 (397)
T ss_pred HHHHHHc---CHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3322211 11111111111235678999999999999999999999733321102232 456679999999999999
Q ss_pred HHhHHhHhhhccCCcchh-------hHhh----cCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHh
Q 016636 284 YFPVALIGYWMFGNKVED-------NILL----SLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (385)
Q Consensus 284 Y~~~g~~gy~~fG~~~~~-------~il~----~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~ 345 (385)
|+..-+.+....+++.-. +++. ..+ ..+...+..++..+.+..||--....++|.+.+.+.
T Consensus 241 y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~-~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 241 VMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFN-AAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred HHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999988888887754321 1222 122 345667788888889999999999999999999883
No 15
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.68 E-value=2.4e-15 Score=143.36 Aligned_cols=294 Identities=11% Similarity=0.099 Sum_probs=198.6
Q ss_pred HHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccccccchhHH
Q 016636 47 FHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQ 126 (385)
Q Consensus 47 ~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~~~~~~~~~ 126 (385)
+.+.++++|+|+|++|-.....|..++++++++++.+++++...+.|.....+ ++..++.+++++.+||+++ .+..+.
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~-~~~~~i~~v~~~~lG~~g~-~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGS-NPSGNITETVEEHFGKTGG-VVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCCCHHHHHHHHcChhHH-HHHHHH
Confidence 88999999999999999999999999999999999999999999999765321 2245999999999998866 899999
Q ss_pred HHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHhheee
Q 016636 127 QLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWS 206 (385)
Q Consensus 127 ~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~ 206 (385)
..+..+..+.+|.....+.+++.+.+..+. ...++....+++.+++...... .-+..-+++..-+...++..+....
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql~~--~~~~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~~l~~ 180 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQLGF--APLNRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLVLISL 180 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCc--CCccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888887765554321 1223444444444444333333 2244444444333322222221112
Q ss_pred eeeeecCCCCccc-cccc-ccc-c-chhhhHHHHHhhHHhhccCceeehhccccCCCCCC---CCC--CCCCchhhhHHH
Q 016636 207 ASVRKGVQPDVAY-GYKA-KTA-A-GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE---KPS--KGPMWRGVVVAY 277 (385)
Q Consensus 207 ~~~~~~~~~~~~~-~~~~-~~~-~-~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~---~p~--~~~~~~~~~~s~ 277 (385)
+.+-+...+.... +.+. +.. . ........++|++++||+-|+++|++...+|+..+ +++ +++.+|++..+.
T Consensus 181 ~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs 260 (443)
T PRK13629 181 SLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRAS 260 (443)
T ss_pred HHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHH
Confidence 2121111111000 0000 000 0 11235788999999999999999999888543111 223 456779999999
Q ss_pred HHHHHHHHhHHhHhhhccCCcch-----h--hHh----hcCCC---c-----hHHHHHHHHHHHHHHHHhhhccccchHH
Q 016636 278 IVVALCYFPVALIGYWMFGNKVE-----D--NIL----LSLEK---P-----TWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (385)
Q Consensus 278 ~~~~~~Y~~~g~~gy~~fG~~~~-----~--~il----~~~~~---~-----~~~~~~~~~~~~~~~~~s~pl~~~p~~~ 338 (385)
.+..++|+..-+.+-..-+++.- + |++ +.+++ . .+...+..++..+.+..||--....++|
T Consensus 261 ~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E 340 (443)
T PRK13629 261 MLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLE 340 (443)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877764321 1 211 22222 1 3467778888888999999999999999
Q ss_pred HHHHHHh
Q 016636 339 MIETLLV 345 (385)
Q Consensus 339 ~l~~~~~ 345 (385)
.++.++.
T Consensus 341 ~l~gl~~ 347 (443)
T PRK13629 341 GLNGLIL 347 (443)
T ss_pred HHHHHHH
Confidence 9999984
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.56 E-value=3.4e-13 Score=132.47 Aligned_cols=242 Identities=9% Similarity=0.023 Sum_probs=153.8
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcC
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G 115 (385)
++|+.|.++.+...+++++|+|++.+|..+++.|- .+++.+++.+++.......+.|...+.|... .....+++.+|
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~G--G~y~y~~~~~G 80 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRKSG--GMGGYAEYAFG 80 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCC--chHHHHHHHcC
Confidence 46789999999999999999999999988888886 5788889999999989999999876677665 77888999999
Q ss_pred ccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHH--HhhCCCCchhhHHHHHHH
Q 016636 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHF--VLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 116 ~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~--pl~~~~~l~~l~~~s~~~ 193 (385)
|++| ++..+..++.......+......+++..+.+.. .+.....++...++. -..-.+..+...+++.+.
T Consensus 81 ~~~g-f~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~-------~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~ 152 (438)
T PRK10655 81 KSGN-FMANYTYGVSLLIANVAIAISAVGYGTELFGAT-------LSPVQICLATIGVLWLCTVANFGGARITGQISSVT 152 (438)
T ss_pred cchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------cchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9888 677776655544444444444444544443210 011111111111111 111223444444444443
Q ss_pred HHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhh
Q 016636 194 AVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGV 273 (385)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~ 273 (385)
.+..++.++++++........++....+. +.....+.++..++....|+|.|.+....+.+|+ |||+| +++|++
T Consensus 153 ~~~~l~~l~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~iPrAi 226 (438)
T PRK10655 153 VWGVIIPVVGLSIIGWFWFSPSLYVAAWN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAV----ENPER-NVPIAV 226 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCcccccCCcC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHh----hCccc-cccHHH
Confidence 33222211111111111111111111111 1111234567788899999999999999999999 88887 799999
Q ss_pred hHHHHHHHHHHHhHHhHhhhc
Q 016636 274 VVAYIVVALCYFPVALIGYWM 294 (385)
Q Consensus 274 ~~s~~~~~~~Y~~~g~~gy~~ 294 (385)
..+..++.++|++........
T Consensus 227 ~~~~~~~~~~Y~l~~~~~~~~ 247 (438)
T PRK10655 227 LGGTLGAAVIYIVSTNVIAGI 247 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999876655433
No 17
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.55 E-value=2.7e-13 Score=133.01 Aligned_cols=246 Identities=11% Similarity=0.063 Sum_probs=155.8
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
+++|+.+.++.+...+++++|+|++.+|...++.|-. .++.+++.++........+.|...+.|..+ ...+.+++ +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~~G--G~y~y~~~-~ 77 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQQG--GPIAYAGE-I 77 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHH-H
Confidence 4678999999999999999999999999999888763 677788888888888899999887788765 67777888 7
Q ss_pred CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 016636 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (385)
|+++| +...+...........++.+...+++..+.+... .......+. +..+.++-+.-.+..+....++.+..
T Consensus 78 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~----~~~~~~~~~-~~i~~~~~~ln~~gvk~~~~i~~i~~ 151 (435)
T PRK10435 78 SPAFG-FQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLN----DPIPAGIAC-IAIVWVFTFVNMLGGTWVSRLTTIGL 151 (435)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC----ChHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 98888 6766655543333334444445555554443211 011111111 11111111222233444444444433
Q ss_pred HHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhh
Q 016636 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (385)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (385)
+..++.++..+.........+....+++ ...+.++.++..++....|+|.|.+.+....+|+ |||+| +++|++.
T Consensus 152 ~~~li~~~~~~i~g~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~----knP~r-~iPrAi~ 225 (435)
T PRK10435 152 VLVLIPVVGTAIVGWHWFDAATYAANWN-TSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMV----KNPKR-TVPLATM 225 (435)
T ss_pred HHHHHHHHHHHHHHHHHcCHHhhccccc-CCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHh----hCccc-cccHHHH
Confidence 3222211111111111111111111111 1112456789999999999999999999999999 78876 7899999
Q ss_pred HHHHHHHHHHHhHHhHhhhccC
Q 016636 275 VAYIVVALCYFPVALIGYWMFG 296 (385)
Q Consensus 275 ~s~~~~~~~Y~~~g~~gy~~fG 296 (385)
.+..++.++|++..+.......
T Consensus 226 ~~~~iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 226 LGTGLAGIIYIAATQVISGMFP 247 (435)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998876654443
No 18
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.53 E-value=1e-12 Score=132.23 Aligned_cols=300 Identities=12% Similarity=0.053 Sum_probs=191.8
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHHH--HhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAM--AQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af--~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~ 112 (385)
+.+|+.+.++.+...++.++|+|++.+|... ...|.. .++.+++.++.+......+.|...+.|..+ +.....++
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~sG--g~Y~y~~~ 101 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPKAG--SAYLYSYV 101 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cceeeHHH
Confidence 4688999999999999999999999999643 346754 566778888888899999999887778765 66667778
Q ss_pred hcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcC----C---C-ccccc-hhhhHHHHHHHHHhhCCCCc
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE----P---C-KEIKL-SYFIMIFASVHFVLSHLPNF 183 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~----~---~-~~~~~-~~~~~i~~~i~~pl~~~~~l 183 (385)
.+|+.++ ++..+..++.....+.+.....++++..++....+. . . ..... .....+..++++-....+..
T Consensus 102 ~~G~~~g-fi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gi 180 (557)
T TIGR00906 102 TVGELWA-FITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGV 180 (557)
T ss_pred HhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhch
Confidence 8999888 788888777666666666666677777666532110 0 0 00001 11112222222223333566
Q ss_pred hhhHHHHHHHHHHHHHHHhheeeeeeeecCCCCccccc---ccccccchhhhHHHHHhhHHhhccCceeehhccccCCCC
Q 016636 184 NAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGY---KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPST 260 (385)
Q Consensus 184 ~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~ 260 (385)
+..++++.+..+..+..++++++........++..... .+...+.++.+++.+....+|+|.|...+....+|+
T Consensus 181 k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~--- 257 (557)
T TIGR00906 181 KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEV--- 257 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhc---
Confidence 77777766665544433333333333222111111000 011223466788999999999999999999999999
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhHHhHhhhccCCc---chh---hHhhcCCCchHHHHHHHHHHHHHHHHhhhcccc
Q 016636 261 PEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK---VED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAM 334 (385)
Q Consensus 261 ~~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~---~~~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~ 334 (385)
|||+| +++|++..++.+++++|.++.+.-......+ .++ ....... .++...+..+...+..+.+..-.++
T Consensus 258 -knP~r-~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g-~~~~~~ii~~~~~~~~~~sl~~~~~ 334 (557)
T TIGR00906 258 -KNPQR-AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVG-WGPAKYIVAVGALCGMSTSLLGGMF 334 (557)
T ss_pred -cCccc-cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcC-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887 7999999999999999998876544333211 111 2222222 2455555666666666666666666
Q ss_pred chHHHHHHHH
Q 016636 335 PVFDMIETLL 344 (385)
Q Consensus 335 p~~~~l~~~~ 344 (385)
...+.+..+-
T Consensus 335 ~~sRil~ama 344 (557)
T TIGR00906 335 PLPRVIYAMA 344 (557)
T ss_pred HHHHHHHHHH
Confidence 6666666553
No 19
>TIGR00909 2A0306 amino acid transporter.
Probab=99.50 E-value=2.3e-12 Score=126.27 Aligned_cols=293 Identities=13% Similarity=0.071 Sum_probs=190.8
Q ss_pred cCCCchhHHHHHHHHhhhhhhhhhHHHHHH-hhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcC
Q 016636 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMA-QLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (385)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~-~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G 115 (385)
+|+.|.++.+...+++++|+|++.+|.... ..|. ..++.+++.++........+.|...+.|+.+ ...+..++.+|
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~G 78 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPVAG--SPYTYAYEAMG 78 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--cceeeHHHHhC
Confidence 578999999999999999999999996644 4454 4566677778888888888899877777754 67788888999
Q ss_pred ccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCcc-------ccchhhhHHHHHHHHHhhCCCCchhhHH
Q 016636 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKE-------IKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (385)
Q Consensus 116 ~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~-------~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 188 (385)
|+.| ++..+...+.....+..+....++++..+++....+.... +....+..+...+++-....+..+...+
T Consensus 79 ~~~g-~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 79 ELTA-FIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 9888 6777777777777777777777888777765321010000 0001111222222233333346676777
Q ss_pred HHHHHHHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCC
Q 016636 189 VSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (385)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~ 268 (385)
++.+.....+..++++++....+...+ .+.+ ..+.++.++..++....|+|.|.+......+|+ |||+| +
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~----~~p~r-~ 227 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASN----NYTP-FMPMGFGGVGAATALVFFAFIGFEAISTAAEEV----KNPER-D 227 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHH----hcCC-CCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhc----cCccc-c
Confidence 776666544433322222222211111 1111 123356678899999999999999999999999 77865 7
Q ss_pred CchhhhHHHHHHHHHHHhHHhHhhhccCCc----ch---hhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 016636 269 MWRGVVVAYIVVALCYFPVALIGYWMFGNK----VE---DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (385)
Q Consensus 269 ~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~----~~---~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~ 341 (385)
++|++..+..+..++|++..+........+ .+ ..+..+.. +++...+..+...+..+.+..-......+.+.
T Consensus 228 ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~ 306 (429)
T TIGR00909 228 IPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLG-QGIGGLILTAGAVFSIASVMLAGIYGTSRVLF 306 (429)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999876655432211 00 12222222 24555667777777777777777776666666
Q ss_pred HHH
Q 016636 342 TLL 344 (385)
Q Consensus 342 ~~~ 344 (385)
.+-
T Consensus 307 ~~a 309 (429)
T TIGR00909 307 AMS 309 (429)
T ss_pred HHH
Confidence 654
No 20
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.49 E-value=4.2e-13 Score=128.32 Aligned_cols=289 Identities=16% Similarity=0.193 Sum_probs=184.5
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHHH-HhhC-chHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAM-AQLG-WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af-~~~G-~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~ 112 (385)
+.+||.+.+.+++.++++++|+|++..|... +++| ...++++++++++++........|.....|+.+ .+.....+
T Consensus 9 ~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG--gd~ayi~~ 86 (479)
T KOG1287|consen 9 QLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG--GDYAYISE 86 (479)
T ss_pred cccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC--cchhhHHH
Confidence 5688999999999999999999999999764 4554 355888899999999999999999988777765 56667778
Q ss_pred hcCccccccchhHHHHHHhhhhhhhhhhhhccc-hHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHH
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKS-LHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSL 191 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~-l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 191 (385)
+||+.++-...++..++..-..+..+.+..+++ +....+ .|. ..+...-.+..+++..+.++ +....++.+.
T Consensus 87 afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----~c~-~p~~~~~lla~~~l~~lt~~-n~~~V~~a~~ 159 (479)
T KOG1287|consen 87 AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----LCD-VPRVASKLLAAALLVLLTLI-NSFSVKWATR 159 (479)
T ss_pred HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----CCC-CchHHHHHHHHHHHHHHHHH-hhhhhhHHHH
Confidence 899887743344444333334446677777777 333333 222 22222222223333333333 4444555555
Q ss_pred HHHHHHH---HHHhheeee---eeeecCCCCcccc-cccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCC
Q 016636 192 AAAVMSL---SYSTIAWSA---SVRKGVQPDVAYG-YKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (385)
Q Consensus 192 ~~~~~~~---~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p 264 (385)
+..++.. ..+.++++. -...+..++.+.. +. ....+..++..++-...|||.|+..+-.+.+|+ |||
T Consensus 160 vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~--g~~~~~g~i~lafysglfa~~GWd~lN~vteEi----knP 233 (479)
T KOG1287|consen 160 VQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE--GSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI----KNP 233 (479)
T ss_pred HHHHHHHHHHHHHHHHHHhchheeEecccccccccccc--cCcCchHHHHHHHHHhhhcccCchhhccchHhh----cCc
Confidence 5555332 112222222 2222322222211 11 122355668899999999999999999999999 889
Q ss_pred CCCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhc------CC---CchHHHHHHHHHHHHHHHHhhhccccc
Q 016636 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLS------LE---KPTWLIVMANFFVVVHVIGSYQIYAMP 335 (385)
Q Consensus 265 ~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~------~~---~~~~~~~~~~~~~~~~~~~s~pl~~~p 335 (385)
.| ++|+++..++.+++++|+++=+..+..-- .+.++.+ +. -+++. .+.-++..++.+.+.--.++.
T Consensus 234 ~k-tLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs 308 (479)
T KOG1287|consen 234 RR-TLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFS 308 (479)
T ss_pred cc-cchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHH
Confidence 87 79999999999999999998776655442 2222211 11 12333 556666667777766666666
Q ss_pred hHHHHHHH
Q 016636 336 VFDMIETL 343 (385)
Q Consensus 336 ~~~~l~~~ 343 (385)
..+.+...
T Consensus 309 ~SR~~~~~ 316 (479)
T KOG1287|consen 309 SSRLFYAG 316 (479)
T ss_pred HHHHHHHH
Confidence 65554444
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.49 E-value=2.6e-12 Score=127.41 Aligned_cols=295 Identities=12% Similarity=0.110 Sum_probs=175.8
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHHHcchhcCC-cccccHHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLG-WGPGVAILILSWIITLYTLWQMVEMHEMVPG-KRFDRYHELGQH 112 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G-~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~-~~~~~y~~i~~~ 112 (385)
+++|+.|.++++...+++++|+|++.+|....+.| ....++.+++.++........+.|...+.|+ .+ ...+..++
T Consensus 4 ~~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG--G~y~y~~~ 81 (473)
T TIGR00905 4 AKSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG--GIYAYARE 81 (473)
T ss_pred ccCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHh
Confidence 34778999999999999999999999998876544 3334567888888888888889998777777 55 67788899
Q ss_pred hcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhH-HHHHHHHHhhCCCCchhhHHHHH
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIM-IFASVHFVLSHLPNFNAIAGVSL 191 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~ 191 (385)
.+||+.| ++..+..++.......++.....+++..+.+..... ..+ ..+.. +...+++-..-.+..+...+++.
T Consensus 82 ~~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~--~~~--~~~~~~~~~~~~~~~ln~~Gi~~~~~i~~ 156 (473)
T TIGR00905 82 GFGPYIG-FMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG--NPV--PSILGASVLLWVFTFLVLRGVRQAAFINT 156 (473)
T ss_pred HcccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--CcH--HHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999888 777777665544445555555555665555532100 011 11111 11111222223345566655555
Q ss_pred HHHHHHHHHHhheeeeeeeecCCCCccccc-cc--ccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCC
Q 016636 192 AAAVMSLSYSTIAWSASVRKGVQPDVAYGY-KA--KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (385)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~ 268 (385)
+..+..+..++++++..+.....++...+. +. +.....+..+..++....|+|.|.+......+|+ || +++
T Consensus 157 ~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~--~r~ 230 (473)
T TIGR00905 157 ITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRA----KN--KSD 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHH----hc--ccc
Confidence 555432222111111111100011110011 00 1112245678888999999999999999999999 66 457
Q ss_pred CchhhhHHHHHHHHHHHhHHhHhhhccCCcc----hhh----HhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHH
Q 016636 269 MWRGVVVAYIVVALCYFPVALIGYWMFGNKV----EDN----ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMI 340 (385)
Q Consensus 269 ~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~----~~~----il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l 340 (385)
++|++..+..++.++|++.........+.+. +++ +..... +.+...+..+...+..+.+.--......+.+
T Consensus 231 iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~ 309 (473)
T TIGR00905 231 VGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIV-GKWGAVLISLGLIISVLGSLLSWTMLAAEVP 309 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHh-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988766544433211 111 111111 1233344455555555555544555555555
Q ss_pred HHH
Q 016636 341 ETL 343 (385)
Q Consensus 341 ~~~ 343 (385)
..+
T Consensus 310 ~am 312 (473)
T TIGR00905 310 FSA 312 (473)
T ss_pred HHH
Confidence 544
No 22
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.48 E-value=2.5e-12 Score=126.53 Aligned_cols=245 Identities=15% Similarity=0.114 Sum_probs=152.4
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
+++|+.+.++++...++.++|+|++.+|...++.|. ..+..+++.++........+.|.....|... ...+.+++.+
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~aG--G~y~~~~~~~ 81 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPSPG--GSYAYARRCF 81 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ChhHHHHHHc
Confidence 467899999999999999999999999998887774 3566777777787888888899877777765 6777799999
Q ss_pred CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhC--CCCchhhHHHHHH
Q 016636 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH--LPNFNAIAGVSLA 192 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~~~s~~ 192 (385)
||.+| ++..+..++.......+......++...+.+... +.....++..++++.+.. ....+...+++.+
T Consensus 82 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~i 153 (445)
T PRK10644 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-------DPLVLTITCVVVLWIFVLLNIVGPKMITRVQAV 153 (445)
T ss_pred CchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-------CcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 99888 6666665554433333333333344433332210 111111122222222222 2344555555544
Q ss_pred HHHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchh
Q 016636 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRG 272 (385)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~ 272 (385)
..+..++.++..+...+.....+.....++ .....++..+..++....|+|.|.+......+|+ |||+| +++|+
T Consensus 154 ~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~iPra 227 (445)
T PRK10644 154 ATVLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIA 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhccCCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHh----hCccc-chhHH
Confidence 443322211111111111110111011111 1112245567778889999999999999999999 78887 78999
Q ss_pred hhHHHHHHHHHHHhHHhHhhhccC
Q 016636 273 VVVAYIVVALCYFPVALIGYWMFG 296 (385)
Q Consensus 273 ~~~s~~~~~~~Y~~~g~~gy~~fG 296 (385)
+..+..++.++|.+..+......+
T Consensus 228 i~~s~~i~~v~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 228 TIGGVLIAAVCYVLSSTAIMGMIP 251 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999998877544443
No 23
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.48 E-value=3.9e-12 Score=125.47 Aligned_cols=291 Identities=15% Similarity=0.122 Sum_probs=176.1
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHH-HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLP-YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+.+|+.+.++.....+++++|+|++..| .+.+..|. .+++.+++.+++.......+.|...+.|..+ +..+.+++.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~G--g~~~~~~~~ 85 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPDTG--SFSTYADDA 85 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 4688999999999999999999999999 56778886 4788889999999999999999887777765 788899999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
+|+.+| ++..+..++.....+.+.....+.++..+.+. .....+.+++.++...+ -....+...++....
T Consensus 86 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~-n~~gv~~~~~~~~~~ 155 (452)
T TIGR01773 86 IGRWAG-FTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD--------IPLWLFSLILTIVLTLT-NLYSVKSYGEFEFWF 155 (452)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CcHHHHHHHHHHHHHHH-HHHhcchhhHHHHHH
Confidence 999888 77777777766666666655655555543221 11122122221111111 112233333333322
Q ss_pred HHHH---HHHHhh-eeeeee-eecCCC--Ccccccc-cccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCC
Q 016636 194 AVMS---LSYSTI-AWSASV-RKGVQP--DVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (385)
Q Consensus 194 ~~~~---~~~~~~-~~~~~~-~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~ 265 (385)
.+.. ++..++ .+.... .....+ +.....+ +...+.++.++..++....|+|.|.+.+....+|+ |||+
T Consensus 156 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~----k~P~ 231 (452)
T TIGR01773 156 ALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAES----SNPI 231 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhh----cChh
Confidence 2211 111111 000000 000000 0010000 11123456679999999999999999999999999 7887
Q ss_pred CCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcc----h----hhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchH
Q 016636 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV----E----DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVF 337 (385)
Q Consensus 266 ~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~----~----~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~ 337 (385)
| +++|++..+.....++|++..+......+.+. + ..+.+.... ++...+..++..+..+.+..-.++...
T Consensus 232 r-~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~-~~~~~ii~~~~~~~~~~~~~~~~~~~s 309 (452)
T TIGR01773 232 K-SITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGI-PHAKLIMDFVVLTAVLSCLNSALYTTS 309 (452)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 78999988888888899886554443333111 1 112222322 233444445555555555555555566
Q ss_pred HHHHHHH
Q 016636 338 DMIETLL 344 (385)
Q Consensus 338 ~~l~~~~ 344 (385)
+.+..+-
T Consensus 310 R~~~a~a 316 (452)
T TIGR01773 310 RMLYSLA 316 (452)
T ss_pred HHHHHHH
Confidence 6655554
No 24
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.48 E-value=2.9e-12 Score=134.95 Aligned_cols=250 Identities=14% Similarity=0.158 Sum_probs=163.8
Q ss_pred cccCCCchhHHHHHH-HHhhhhhhhh-hHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchh-cCCcccccHHHHHH
Q 016636 35 TSSRNAKWWYSAFHN-VTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM-VPGKRFDRYHELGQ 111 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l-~~~~iG~GiL-~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~-~~~~~~~~y~~i~~ 111 (385)
++.++.|++++++.- +.+++|+|++ .+++...++|...+++.++++++++..+..-+.+.... .++.+ .-+.+.+
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG--G~Y~yis 150 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG--GAYYLIS 150 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc--HHHHHHH
Confidence 456789999999999 9999999996 66788889998888999999999999999999997764 44443 5667778
Q ss_pred HhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcC-CCccc-cchhhhHHHHHHHHHhhCCCCchhhHHH
Q 016636 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE-PCKEI-KLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (385)
Q Consensus 112 ~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~-~~~~~-~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 189 (385)
+.+|+.+| ..+.+...+.....+..|.+..++++..+++..... ..... +...+.+++.+++..+. ....+...++
T Consensus 151 ralGp~~G-f~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In-~~Gvk~~ak~ 228 (953)
T TIGR00930 151 RSLGPEFG-GSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGIS-FAGMEWENKA 228 (953)
T ss_pred HHhCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 89999888 788888877777788889998999988876542100 00011 11222222222222222 2244444444
Q ss_pred HHHHHHHHHHHHhheeeeeeeecCCCCcccc--------cccc---cccchhhhHHHHHhhHHhhccCceeehhccccCC
Q 016636 190 SLAAAVMSLSYSTIAWSASVRKGVQPDVAYG--------YKAK---TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIP 258 (385)
Q Consensus 190 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~---~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~ 258 (385)
+.+.+++.++.++.+++..+..... ....+ +... ..+....+++..++++++||.|......+..|+
T Consensus 229 q~vl~vi~ll~ll~~iig~~~~~~~-~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgEl- 306 (953)
T TIGR00930 229 QVLFLVIVLLSILNIFVGTIIPAFD-KPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGDL- 306 (953)
T ss_pred HHHHHHHHHHHHHHHHheeeecCCC-CCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 4443333222222222222221110 00000 0000 011122237888999999999999999999999
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhHHhHhhhc
Q 016636 259 STPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM 294 (385)
Q Consensus 259 ~~~~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 294 (385)
|||+| ++++++..++.+++++|+++.+.....
T Consensus 307 ---KnP~r-~IPratl~ai~i~~vlYllv~~~~~~~ 338 (953)
T TIGR00930 307 ---KDPQK-AIPKGTLLAILTTTVVYLGSVVLFGAC 338 (953)
T ss_pred ---cChhh-hhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 88987 799999999999999999997644433
No 25
>PRK11021 putative transporter; Provisional
Probab=99.47 E-value=7.6e-12 Score=121.88 Aligned_cols=230 Identities=13% Similarity=0.157 Sum_probs=145.3
Q ss_pred CchhHHHHHHHHhhhhhhhhhHHHH-HHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccc
Q 016636 40 AKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (385)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~ 118 (385)
.++++++...+++|+|+|++.+|.. .+..|- .+++.+++.+++.......+.|...+.|+.. ......++.+||++
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~aG--G~y~y~~~~~G~~~ 77 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPHAG--GPAHFVGMAFGPRL 77 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHhHHHHhCchh
Confidence 3678999999999999999999965 555564 5788889999999999999999888788776 78889999999998
Q ss_pred cccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHHH
Q 016636 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSL 198 (385)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 198 (385)
| +...+..+........+.......++..+++ . ..+... ...+...+++-+.-.+..+...+++....+..+
T Consensus 78 g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~-~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~ 149 (410)
T PRK11021 78 G-RVTGWLFLSVIPVGLPAALQIAAGFGQALFG----W--SSWQLL-LAELLTLALLWLLNLRGASSSANLQTVIALLIV 149 (410)
T ss_pred H-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcC----C--CCchHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 8 6666665543222222222233333333221 1 111111 111111112222222344444444443332222
Q ss_pred HHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhhHHHH
Q 016636 199 SYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYI 278 (385)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~ 278 (385)
..+.. .. ..+..+..+...+ ...+.++.++..++...+|+|.|.+.+....+|+ |||+| +++|++..+..
T Consensus 150 ~i~~~--~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~k-~iPrAi~~~~~ 219 (410)
T PRK11021 150 ALVVA--IW--WAGDIKPADIPFP-APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEF----KNPER-DFPRALMIGLL 219 (410)
T ss_pred HHHHH--HH--HHcCCchhcCCCC-CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhc----cCccc-cccHHHHHHHH
Confidence 11111 11 1111111111111 1123467788999999999999999999999999 78887 79999999999
Q ss_pred HHHHHHHhHHhH
Q 016636 279 VVALCYFPVALI 290 (385)
Q Consensus 279 ~~~~~Y~~~g~~ 290 (385)
++.++|++..+.
T Consensus 220 ~~~~lYil~~~~ 231 (410)
T PRK11021 220 LAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 26
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.46 E-value=2.3e-12 Score=123.28 Aligned_cols=287 Identities=14% Similarity=0.200 Sum_probs=186.9
Q ss_pred CCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCcc
Q 016636 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (385)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~ 117 (385)
+|.|.+|..+.+.++++|+|++.+|....+.+--.+++..++.+++......++.+...++|++ +..++.++.+||.
T Consensus 1 ~~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~---~~~~~~~~~~Gk~ 77 (359)
T TIGR00912 1 DKISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK---NFSEILSKYLGKI 77 (359)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhhHH
Confidence 3678899999999999999999999987665544577788888888888888889888767763 7999999999998
Q ss_pred ccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhh-HHHHHHHHHhhCCCCchhhHHHHHHHHHH
Q 016636 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFI-MIFASVHFVLSHLPNFNAIAGVSLAAAVM 196 (385)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~-~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 196 (385)
.| .+..+....+....+.......++.+.... . + +...+. .+..+++.-....+.++...+++.+....
T Consensus 78 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l-~-----~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~ 147 (359)
T TIGR00912 78 LG-RLLSILFILYFFLIAAYLIRIFADFIKTYL---L-P-----RTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLII 147 (359)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c-C-----CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 88 455555555555554444444444443221 1 1 112222 22233333334446788888888877765
Q ss_pred HHHH-HhheeeeeeeecCCCCcccccccccccchhhhHHHHHh-hHHhhccCceeehhccccCCCCCCCCCCCCCchhhh
Q 016636 197 SLSY-STIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALG-DVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (385)
Q Consensus 197 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (385)
.+.. ..++......+. +.++- .+..+.++.+...+.- ...++|.+...+.....++ ++|++ .+|...
T Consensus 148 ~i~~~~~il~~~~~~~~---~~~~l--~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~----~~~~~--~~k~~~ 216 (359)
T TIGR00912 148 FLILFILVLILLAPKLG---NIKNL--LPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL----SKKKK--IKKSII 216 (359)
T ss_pred HHHHHHHHHHHHhcccc---cHHHc--cCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh----CChhh--hHHHHH
Confidence 4443 122222222111 11111 1222345666666554 8889999988888888888 55544 679999
Q ss_pred HHHHHHHHHHHhHHhHhhhccCCcchh-------hHhhcCCCchH---HHHHHHHHHHHHHHHhhhccccchHHHHHHHH
Q 016636 275 VAYIVVALCYFPVALIGYWMFGNKVED-------NILLSLEKPTW---LIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 344 (385)
Q Consensus 275 ~s~~~~~~~Y~~~g~~gy~~fG~~~~~-------~il~~~~~~~~---~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~ 344 (385)
.+..++.++|....+.....+|.+..+ +.....+-++. .-.+....-....+.+..+.++.....+.+.+
T Consensus 217 ~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~ 296 (359)
T TIGR00912 217 KAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLF 296 (359)
T ss_pred HHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988888865433 22222221222 12234445556667788888888888888887
Q ss_pred hhhc
Q 016636 345 VKKL 348 (385)
Q Consensus 345 ~~~~ 348 (385)
..++
T Consensus 297 ~~~~ 300 (359)
T TIGR00912 297 KKRK 300 (359)
T ss_pred CCCC
Confidence 6554
No 27
>PRK10249 phenylalanine transporter; Provisional
Probab=99.46 E-value=3.7e-12 Score=125.69 Aligned_cols=290 Identities=13% Similarity=0.090 Sum_probs=172.8
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHH-HHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+.+|+.+.++.....++.++|+|++..|.. .+..|. ..++.+++.+++....+..+.|...+.|... +....+++.
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~~G--g~~~y~~~~ 94 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPVSG--SFAHFAYKY 94 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Confidence 467889999999999999999999988854 556676 4788889999999999999999887778766 888899999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
+|+.+| ++..+..++.......+.....+.+++.+.+. .....+.+.+..+...+ -.+..+..+++....
T Consensus 95 ~g~~~g-f~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~~l~~~l-N~~gv~~~~~i~~~~ 164 (458)
T PRK10249 95 WGPFAG-FLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD--------VPTWIWAAAFFIIINAV-NLVNVRLYGETEFWF 164 (458)
T ss_pred hChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--------CcHHHHHHHHHHHHHHH-HHhcchhhhhHHHHH
Confidence 999888 78877776665544444444444443322211 11112222222222112 122333333333222
Q ss_pred HH---HHHHHHhheeeeeeeecC-CC--Ccccccc-cccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCC
Q 016636 194 AV---MSLSYSTIAWSASVRKGV-QP--DVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (385)
Q Consensus 194 ~~---~~~~~~~~~~~~~~~~~~-~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~ 266 (385)
.+ ..++.+++........+. .+ +.+...+ +...+.++.++..++....|+|.|.+.+....+|+ |||+|
T Consensus 165 ~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----~~P~k 240 (458)
T PRK10249 165 ALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA----RDPEK 240 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cCHhh
Confidence 11 111111110000000111 01 1111111 11123567788999999999999999999999999 78887
Q ss_pred CCCchhhhHHHHHHHHHHHhHHhHhhhccCCcc----hh---hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHH
Q 016636 267 GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV----ED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM 339 (385)
Q Consensus 267 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~----~~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~ 339 (385)
+++|++..+.....++|+...+......++.. ++ .+..+.. .++...+..+...+..+.+..-.++...+.
T Consensus 241 -~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~ 318 (458)
T PRK10249 241 -SIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLD-SNVVASALNFVILVASLSVYNSGVYSNSRM 318 (458)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999876554443333221 11 1122222 233444445555555555554445555555
Q ss_pred HHHH
Q 016636 340 IETL 343 (385)
Q Consensus 340 l~~~ 343 (385)
+..+
T Consensus 319 l~a~ 322 (458)
T PRK10249 319 LFGL 322 (458)
T ss_pred HHHH
Confidence 5554
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.46 E-value=4.6e-12 Score=125.58 Aligned_cols=292 Identities=11% Similarity=0.117 Sum_probs=170.9
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHH-HHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+.+|+.+.++.....++.++|+|++..|.. .+..|-...++.+++.+++.......+.|.....|... .+...+++.
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aG--G~y~y~~~~ 88 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETG--AFHVYAARY 88 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHh
Confidence 357889999999999999999999988865 56777544577788888999999999999887788766 788999999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
+|+.+| ++..+..++.....+.......+.++..+ .+. .....+.++..++...+ -.+..+...+.+...
T Consensus 89 ~g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~p~----~~~~~~~~~~~~~~~~i-n~~gvk~~~~~~~~~ 158 (471)
T PRK11387 89 LGPATG-YTVAWLYWLTWTVALGSSLTAAGFCMQYW----FPQ----VPVWPWCLLFCALIFGL-NVVSTRFFAEGEFWF 158 (471)
T ss_pred cChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCc----CcHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 999888 67777766655444433333333222211 111 11112222222211111 112333333332222
Q ss_pred HHHHHHHH--hheee----eeeeecCCCCcccc---cccc-cccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCC
Q 016636 194 AVMSLSYS--TIAWS----ASVRKGVQPDVAYG---YKAK-TAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (385)
Q Consensus 194 ~~~~~~~~--~~~~~----~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~ 263 (385)
....++.+ ++++. .........+.... +... ..+.+..++..++....|+|.|.+.+....+|+ ||
T Consensus 159 ~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----kn 234 (471)
T PRK11387 159 SLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET----EN 234 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh----cC
Confidence 11111111 01100 00000000000000 1000 112344567888888999999999999999999 88
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhHHhHhhhccCCc-ch---h---hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccch
Q 016636 264 PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-VE---D---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (385)
Q Consensus 264 p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~-~~---~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 336 (385)
|+| +++|++..+..++.++|+...+......+.+ .. + .+..+.. .++...+..++..+..+.+.--.++..
T Consensus 235 P~r-~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g-~~~~~~ii~~~~~~s~~~~~~~~~~~~ 312 (471)
T PRK11387 235 PAK-VIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVG-IPYAADIFNFVILTAILSAANSGLYAS 312 (471)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 977 7999999999999999998876554444321 11 1 2223332 234445555556666655555555555
Q ss_pred HHHHHHHH
Q 016636 337 FDMIETLL 344 (385)
Q Consensus 337 ~~~l~~~~ 344 (385)
.+.+..+-
T Consensus 313 sR~l~a~a 320 (471)
T PRK11387 313 GRMLWSLS 320 (471)
T ss_pred hHHHHHHH
Confidence 55555553
No 29
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.43 E-value=7.3e-12 Score=124.02 Aligned_cols=291 Identities=13% Similarity=0.100 Sum_probs=168.6
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHH-HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+.+|+.+.++.....++.+||+|++..|. +++++|. ..++.+++++++.......+.|.....+... ++.+.+++.
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~--~~~~ya~~~ 93 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLEYK--SFSDFASDL 93 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cHHHHHHHH
Confidence 47889999999999999999999998775 6778887 4677778888888888888888764333332 677899999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
+|+..| ++..+..++.......+.....+.++..+.+. .....+.+++..++..+ -....+...+++.+.
T Consensus 94 ~g~~~g-f~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~--------~~~~~~~~~~~~~~~~i-N~~g~~~~~~i~~~~ 163 (469)
T PRK11049 94 LGPWAG-YFTGWTYWFCWVVTGIADVVAITAYAQFWFPD--------LSDWVASLAVVLLLLSL-NLATVKMFGEMEFWF 163 (469)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CcHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHH
Confidence 999888 78888877665444444444444444332221 11122222211111111 112334444443332
Q ss_pred HHHHHHHHhheeeeee--e-ecC-CC-C----cccccc-cccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCC
Q 016636 194 AVMSLSYSTIAWSASV--R-KGV-QP-D----VAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (385)
Q Consensus 194 ~~~~~~~~~~~~~~~~--~-~~~-~~-~----~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~ 263 (385)
.+..+..++.+++..+ . .+. .+ + .....+ ....+.++.++..++...+|+|.|.+.+....+|+ ||
T Consensus 164 ~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~----kn 239 (469)
T PRK11049 164 AMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET----KD 239 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh----cC
Confidence 2211111111111100 0 000 00 0 100011 11123456678999999999999999999999999 78
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhHHhHhhhccCCc-c---hh---hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccch
Q 016636 264 PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-V---ED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (385)
Q Consensus 264 p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~-~---~~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 336 (385)
|+| +++|++..+.....++|.+..+.....-+.+ . ++ .+..... ..+...+..++..+..+.+.--.++..
T Consensus 240 P~r-~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~s~~~~~~~~~~~~ 317 (469)
T PRK11049 240 PEK-SLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVG-LPAAASVINFVVLTSAASSANSGVFST 317 (469)
T ss_pred Hhh-HHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcC-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 876 7889998777778888887665554332211 1 01 1112222 233444555556666555555555555
Q ss_pred HHHHHHHH
Q 016636 337 FDMIETLL 344 (385)
Q Consensus 337 ~~~l~~~~ 344 (385)
.+.+..+-
T Consensus 318 sR~l~a~a 325 (469)
T PRK11049 318 SRMLFGLA 325 (469)
T ss_pred HHHHHHHH
Confidence 55555553
No 30
>PRK15049 L-asparagine permease; Provisional
Probab=99.42 E-value=1.6e-11 Score=122.25 Aligned_cols=292 Identities=11% Similarity=0.113 Sum_probs=170.8
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhhhHHH-HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
.+|+.+.++.....++.+||+|++..|. +++..|- .+++.+++.+++....+..+.|.....|... +....+++.+
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aG--g~y~y~~~~~ 102 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSG--SFVSYAREFL 102 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHh
Confidence 5678999999999999999999998886 6777776 5678888999999999999999887778766 8899999999
Q ss_pred CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 016636 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (385)
|+++| +++.+..++.....+.......+.+.... +.+. ......+.+.+.++...+ -....+...++.....
T Consensus 103 G~~~g-f~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~-----~~~~~~~~~~~~~l~~~i-N~~gvk~~~~i~~~~~ 174 (499)
T PRK15049 103 GEKAA-YVAGWMYFINWAMTGIVDITAVALYMHYW-GAFG-----GVPQWVFALAALTIVGTM-NMIGVKWFAEMEFWFA 174 (499)
T ss_pred CcHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCC-----CCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99888 77777776654333333232233222111 1110 111111222212111111 1112333333332222
Q ss_pred HH---HHHHHhheeeeeeeecCCCC-ccccc-----ccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCC
Q 016636 195 VM---SLSYSTIAWSASVRKGVQPD-VAYGY-----KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (385)
Q Consensus 195 ~~---~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~ 265 (385)
+. .++.++++.......+...+ ...++ +....+.++.+++.++...+|+|.|.+.+....+|+ |||+
T Consensus 175 ~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~----knP~ 250 (499)
T PRK15049 175 LIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC----KDPQ 250 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh----cChh
Confidence 11 11111111001111111100 00011 111223455666777788999999999999999999 8887
Q ss_pred CCCCchhhhHHHHHHHHHHHhHHhHhhhccCCc-c---hh---hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHH
Q 016636 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNK-V---ED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (385)
Q Consensus 266 ~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~-~---~~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~ 338 (385)
| +++|++..++....++|+............+ . .+ .+..... ..+...+..+...+..+.+..-.++...+
T Consensus 251 r-~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g-~~~~~~ii~~~ilia~~ss~ns~~~~~sR 328 (499)
T PRK15049 251 T-MVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLG-VPYIGSIMNIVVLTAALSSLNSGLYCTGR 328 (499)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 7899999999999999988766554443321 1 11 1222222 13344555666666666666566666666
Q ss_pred HHHHHH
Q 016636 339 MIETLL 344 (385)
Q Consensus 339 ~l~~~~ 344 (385)
.+..+-
T Consensus 329 ~l~a~A 334 (499)
T PRK15049 329 ILRSMA 334 (499)
T ss_pred HHHHHH
Confidence 665554
No 31
>PRK10836 lysine transporter; Provisional
Probab=99.39 E-value=3e-11 Score=120.28 Aligned_cols=292 Identities=14% Similarity=0.123 Sum_probs=167.3
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHH-HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+.+|+.+.++.....++++||+|++..|. +.++.|....++.+++++++....+..+.|...+.|..+ +....+++.
T Consensus 12 ~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sG--g~y~y~~~~ 89 (489)
T PRK10836 12 GLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSG--SFATYGQNY 89 (489)
T ss_pred cccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--CHHHHHHHH
Confidence 46788999999999999999999999996 677778655688899999999999999999988788776 788888899
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHH--HHhhCCCCchhhHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH--FVLSHLPNFNAIAGVSL 191 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~--~pl~~~~~l~~l~~~s~ 191 (385)
+|+.+| ++..+..++..... .+........ +.....+. .....+..+..+++ +-+.-.|...+......
T Consensus 90 ~g~~~g-f~~Gw~~~~~~~~~-~a~~~~a~~~---~~~~~~~~----~~~~~~~~~~~~~~~~lN~~gv~~~~~~~~~~~ 160 (489)
T PRK10836 90 VEEGFG-FALGWNYWYNWAVT-IAVDLVAAQL---VMSWWFPD----TPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS 160 (489)
T ss_pred cChHHH-HHHHHHHHHHHHHH-HHHHHHHHHH---HhhhcCCC----CchHHHHHHHHHHHHHHHHHcchhhhhhHHHHH
Confidence 998888 66666655533222 2221111211 11111111 11111222222111 11112222223222222
Q ss_pred HHHHHHH---HHHhheeeeeeeecCC-CCcccccc--cccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCC
Q 016636 192 AAAVMSL---SYSTIAWSASVRKGVQ-PDVAYGYK--AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (385)
Q Consensus 192 ~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~ 265 (385)
+..+..+ +...+.......++.. .+.+ ++. ....+.++..+..+.....|+|.|.+.+....+|+ |||+
T Consensus 161 ~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~----knP~ 235 (489)
T PRK10836 161 LIKVTTVIVFIIVGVLMIIGIFKGAEPAGWS-NWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGES----EDPA 235 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCccc-cCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHh----cCHH
Confidence 1111111 1111111111111111 0000 111 01112345566666777789999999999999999 8897
Q ss_pred CCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcchh---------------hHhhcCCCchHHHHHHHHHHHHHHHHhhh
Q 016636 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED---------------NILLSLEKPTWLIVMANFFVVVHVIGSYQ 330 (385)
Q Consensus 266 ~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~---------------~il~~~~~~~~~~~~~~~~~~~~~~~s~p 330 (385)
| +++|++..++..+.++|++...........+..+ .+..+.. ..+...+..++..+..+.+.-
T Consensus 236 r-~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g-~~~~~~ii~~~il~a~~~~~n 313 (489)
T PRK10836 236 K-NIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAG-LLSAAAVMNAVILTAVLSAGN 313 (489)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcC-ChhHHHHHHHHHHHHHHHHHH
Confidence 7 7999999999999999998866554443311111 1111111 122334455555566666655
Q ss_pred ccccchHHHHHHHH
Q 016636 331 IYAMPVFDMIETLL 344 (385)
Q Consensus 331 l~~~p~~~~l~~~~ 344 (385)
-.++...+.+..+-
T Consensus 314 ~~~~~~sR~l~a~A 327 (489)
T PRK10836 314 SGMYASTRMLYTLA 327 (489)
T ss_pred HHHHHHHHHHHHHH
Confidence 55666666665553
No 32
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.37 E-value=3.5e-11 Score=118.74 Aligned_cols=291 Identities=13% Similarity=0.107 Sum_probs=173.5
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHH-HHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+.+|+.+.++..+..++.++|+|++..|.. .+..|- ..++.+++.+++.......+.|...+.|... ++.+.+++.
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aG--g~y~~~~~~ 85 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAG--SFSHFAYKY 85 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 467899999999999999999999988865 556665 5677788888888888999999877777766 888889999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
+||..+ ++..+..++.....+.+.....+++++...+. .....+.+++..+..-+. ....+...+++...
T Consensus 86 ~g~~~g-f~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~--------~~~~~~~~i~~~~~~~lN-~~gv~~~~~~~~~~ 155 (456)
T PRK10238 86 WGSFAG-FASGWNYWVLYVLVAMAELTAVGKYIQFWYPE--------IPTWVSAAVFFVVINAIN-LTNVKVFGEMEFWF 155 (456)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------CcHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHH
Confidence 999888 88888888877777776766666665443221 112222222222211111 11333333333332
Q ss_pred HHHHHHHHh---h-eeeeeeeecCCC--Ccccccc-cccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCC
Q 016636 194 AVMSLSYST---I-AWSASVRKGVQP--DVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (385)
Q Consensus 194 ~~~~~~~~~---~-~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~ 266 (385)
.+..+..++ + .+.........+ ......+ +...+.++.++..+++...|+|.|.+......+|+ |||+|
T Consensus 156 ~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~----knP~r 231 (456)
T PRK10238 156 AIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEA----DNPEQ 231 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhh----cChhh
Confidence 222111111 1 001101100011 1111011 11113456677888889999999999999999999 78877
Q ss_pred CCCchhhhHHHHHHHHHHHhHHhHhh--hccCCcc--hh---hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHH
Q 016636 267 GPMWRGVVVAYIVVALCYFPVALIGY--WMFGNKV--ED---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM 339 (385)
Q Consensus 267 ~~~~~~~~~s~~~~~~~Y~~~g~~gy--~~fG~~~--~~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~ 339 (385)
+++|++..+.....++|...-.... .-+.+-. .+ .++.+... .+...+..+...+..+.+..-..+...+.
T Consensus 232 -~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~-~~~~~i~~~~i~~~~~s~~~~~~~~~sR~ 309 (456)
T PRK10238 232 -SIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGD-TFVANALNIVVLTAALSVYNSCVYCNSRM 309 (456)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899998888887887765433211 1121111 11 12222322 33344455555555555555556666666
Q ss_pred HHHHH
Q 016636 340 IETLL 344 (385)
Q Consensus 340 l~~~~ 344 (385)
+..+-
T Consensus 310 l~a~a 314 (456)
T PRK10238 310 LFGLA 314 (456)
T ss_pred HHHHH
Confidence 55553
No 33
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.37 E-value=5.8e-11 Score=116.88 Aligned_cols=239 Identities=14% Similarity=0.120 Sum_probs=151.4
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
+.+|+.|.++.....++.++|......+..++..|+..-++.+++.++........+.|...+.|+.. .....+++.+
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~G--g~y~~~~~~~ 81 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAG--GGYGFARRAF 81 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHHh
Confidence 46788999999999999999844456678888889865555667777777777888999887788766 7888999999
Q ss_pred CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 016636 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (385)
|+.+| ++..+..++.......++....++++..+.+.. ......+++..+.. +.-.+..+...+++....
T Consensus 82 G~~~g-f~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~--------~~~~~~~~~~~~~~-~ln~~g~~~~~~i~~~~~ 151 (442)
T TIGR00908 82 GPWGG-FLAGTAILIEFAFAPPAIACFIGAYCESLFPVG--------PGWLAALVFYIVFI-GINILGVGEAAKLEFVVT 151 (442)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------chhHHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Confidence 99888 777777777666666777777777776554321 11121221111111 111123344444433333
Q ss_pred HHHHHHHhheeeeeeeecCCCCccc-cc--ccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCch
Q 016636 195 VMSLSYSTIAWSASVRKGVQPDVAY-GY--KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWR 271 (385)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~ 271 (385)
+..++.+.+++.....+....+... .. .+...+.++.++..++...+|+|.|++......+|+ |||+| +++|
T Consensus 152 ~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~----k~P~r-~ipr 226 (442)
T TIGR00908 152 AVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEET----KNPKR-DIPR 226 (442)
T ss_pred HHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCccc-ccCH
Confidence 2222211111111111100000000 00 011123345678888999999999999999999999 78877 7899
Q ss_pred hhhHHHHHHHHHHHhHHhH
Q 016636 272 GVVVAYIVVALCYFPVALI 290 (385)
Q Consensus 272 ~~~~s~~~~~~~Y~~~g~~ 290 (385)
++..+..++.++|+..-+.
T Consensus 227 ai~~s~~~~~~~~~~~~~~ 245 (442)
T TIGR00908 227 GLIGAILTLLALAAGILVV 245 (442)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999988888876443
No 34
>PRK10746 putative transport protein YifK; Provisional
Probab=99.36 E-value=5e-11 Score=117.71 Aligned_cols=292 Identities=12% Similarity=0.073 Sum_probs=175.8
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHH-HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+.+|+.+.++.....++.+||+|++..|. +.+.+|. ..++.+++.+++.......+.|.....|..+ ++.+.+++.
T Consensus 7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sG--g~~~y~~~~ 83 (461)
T PRK10746 7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPVTG--SFAVYAHRY 83 (461)
T ss_pred HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Confidence 35778999999999999999999998775 5777776 4667888888988999999999877777766 899999999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhC--CCCchhhHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH--LPNFNAIAGVSL 191 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~l~~l~~~s~ 191 (385)
+|+.+| +++.+..++.....+.+.....+.+++.+.+. .....+..+...++.-+.+ .|...++.....
T Consensus 84 ~g~~~G-f~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~--------~~~~~~~~~~~~~~~~lN~~gv~~~~~~e~~~~ 154 (461)
T PRK10746 84 MSPFFG-YLTAWSYWFMWMAVGISEITAIGVYVQFWFPE--------MAQWIPALIAVALVALANLAAVRLYGEIEFWFA 154 (461)
T ss_pred hCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--------CchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999989 78888777766655555555555554433221 1222222222222211111 122222221111
Q ss_pred -HHHHHHHHHHhhee--e-eeeeec-CCCCccccc-ccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCC
Q 016636 192 -AAAVMSLSYSTIAW--S-ASVRKG-VQPDVAYGY-KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (385)
Q Consensus 192 -~~~~~~~~~~~~~~--~-~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~ 265 (385)
+.+...+..+++.+ . ....+. ...+.++.. +....+.++.++..++....|+|.|.+.+....+|+ |||+
T Consensus 155 ~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~----knP~ 230 (461)
T PRK10746 155 MIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA----KNPQ 230 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh----cChh
Confidence 11111111111110 1 111100 000011100 011123467788999999999999999999999999 7887
Q ss_pred CCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcch----hh---HhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHH
Q 016636 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE----DN---ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (385)
Q Consensus 266 ~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~----~~---il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~ 338 (385)
| +++|++..+.....++|+...+........+.. ++ ...+... .....+.++...+..+.+..-.++...+
T Consensus 231 k-~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~-~~~~~i~~~~il~a~~s~~n~~~~~~sR 308 (461)
T PRK10746 231 V-TLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGI-TAAAGIINFVVLTAALSGCNSGMYSCGR 308 (461)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 799999988888888998865444443332211 11 1222221 2233445555666666666666666666
Q ss_pred HHHHHH
Q 016636 339 MIETLL 344 (385)
Q Consensus 339 ~l~~~~ 344 (385)
.+..+-
T Consensus 309 ~l~~~a 314 (461)
T PRK10746 309 MLYALA 314 (461)
T ss_pred HHHHHH
Confidence 666664
No 35
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.36 E-value=6.1e-11 Score=117.48 Aligned_cols=292 Identities=14% Similarity=0.136 Sum_probs=174.4
Q ss_pred CCCchhHHHHHHHHhhhhhhhhhHHHHH-HhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCc-ccccHHHHHHHhcC
Q 016636 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAM-AQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGK-RFDRYHELGQHAFG 115 (385)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~af-~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~-~~~~y~~i~~~~~G 115 (385)
|+.|.++.+...+++++|+|++.+|... +..|....++.+++.++........+.|...+.|+. . ...+.+++.+|
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gG--G~y~y~~~~fG 78 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG--GVYSYAKAGFG 78 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC--ChhhhHHhHcC
Confidence 5789999999999999999999999764 455644456678888888888889999987767753 2 56677999999
Q ss_pred ccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHH-HHHHHHHhhCCCCchhhHHHHHHHH
Q 016636 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMI-FASVHFVLSHLPNFNAIAGVSLAAA 194 (385)
Q Consensus 116 ~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i-~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (385)
|..| ++..+..++.......++......++..+.+.... ..+...+.+. ..+..+-..-.+..+..++++.+..
T Consensus 79 ~~~g-f~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~~ 153 (468)
T TIGR03810 79 PFMG-FISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGG----GNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTITT 153 (468)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC----CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9888 77777766654444444554444444433332210 0011111111 1111222222345555555555544
Q ss_pred HHHHHHHhheee--eeeeecCCCCcc-cc-cc-cccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCC
Q 016636 195 VMSLSYSTIAWS--ASVRKGVQPDVA-YG-YK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (385)
Q Consensus 195 ~~~~~~~~~~~~--~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~ 269 (385)
+..++.++++++ ....++.....+ .. .+ .......+.++..++....|+|.|.+....+.+|. || ++++
T Consensus 154 ~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~----k~--~k~i 227 (468)
T TIGR03810 154 IAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARA----EK--RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhc----cC--cccc
Confidence 432221111111 111111000000 00 00 00112234567788899999999999999988988 54 4578
Q ss_pred chhhhHHHHHHHHHHHhHHhHhhhccCCcc----h----hhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 016636 270 WRGVVVAYIVVALCYFPVALIGYWMFGNKV----E----DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (385)
Q Consensus 270 ~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~----~----~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~ 341 (385)
+|++..+...+.++|++..+..+...+++. + ..+..+.. +++...+..+...++.+.+.--.+....+.+.
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~-g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~ 306 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV-GTWGAVLINIGLIISILGAWLSWTLLPAEIPL 306 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998877665544221 1 12222322 24555667777777777777666666666655
Q ss_pred HH
Q 016636 342 TL 343 (385)
Q Consensus 342 ~~ 343 (385)
.+
T Consensus 307 a~ 308 (468)
T TIGR03810 307 LM 308 (468)
T ss_pred HH
Confidence 54
No 36
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.35 E-value=9e-11 Score=115.94 Aligned_cols=239 Identities=13% Similarity=0.131 Sum_probs=149.6
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHH-HHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+.+|+.|.++.....+++++|+|++.+|.. .+..|. .+++.+++.+++.......+.|...+.|..+ +..+.+++.
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~G--g~y~y~~~~ 82 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPAAS--SFSRYAQEN 82 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Confidence 457789999999999999999999999865 556675 4688888999999999999999887777655 777889999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
+||.+| +++.+..++.....+.......+.++..+.+. .....+.+...++..-+ -.+..+...++....
T Consensus 83 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~l-n~~gv~~~~~~~~~~ 152 (457)
T PRK10580 83 LGPLAG-YITGWTYCFEILIVAIADVTAFGIYMGVWFPT--------VPHWIWVLSVVLIICAV-NLMSVKVFGELEFWF 152 (457)
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CChHHHHHHHHHHHHHH-HHccchhHHHHHHHH
Confidence 999888 77777766655444444334444443332211 11122222222222222 222344444433322
Q ss_pred HHHHHH---HHh-h---eeeeeeeecCC-CCcccccc-cccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCC
Q 016636 194 AVMSLS---YST-I---AWSASVRKGVQ-PDVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (385)
Q Consensus 194 ~~~~~~---~~~-~---~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p 264 (385)
.+..+. ..+ . +......+... .+....++ +...+.++.++..++....|+|.|.+......+|+ |||
T Consensus 153 ~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~----knP 228 (457)
T PRK10580 153 SFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEA----KDP 228 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHh----cCh
Confidence 221111 110 0 01111111101 11111111 11224456688889999999999999999999999 788
Q ss_pred CCCCCchhhhHHHHHHHHHHHhHHhHh
Q 016636 265 SKGPMWRGVVVAYIVVALCYFPVALIG 291 (385)
Q Consensus 265 ~~~~~~~~~~~s~~~~~~~Y~~~g~~g 291 (385)
+| +++|++..+.....++|+......
T Consensus 229 ~k-~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 229 EK-SIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 788999988888888888775544
No 37
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.35 E-value=7.7e-11 Score=117.81 Aligned_cols=250 Identities=12% Similarity=0.130 Sum_probs=148.2
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhhhHHHH-HHhhCch-HHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHH
Q 016636 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWG-PGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ 111 (385)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~~-~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~ 111 (385)
.+.+|+.|.+++....+++++|+|++..|.. .+..|-. ..++.+++.+++.......+.|.....|..+ ......+
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sG--G~y~~~~ 115 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSG--GEYNYIL 115 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhHH
Confidence 4567889999999999999999999988865 5556643 2235667778888888899999887777765 6778888
Q ss_pred HhcCccccccchhHHHHH-HhhhhhhhhhhhhccchHH-HHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHH
Q 016636 112 HAFGEKLGLYIVVPQQLI-VEVGVCIVYMVTGGKSLHK-VHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (385)
Q Consensus 112 ~~~G~~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~-l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 189 (385)
+.+|+.++ ++..+.... ...+.+..+....++++.. +.+. .....+.... +.+..++++-..-.+..+...++
T Consensus 116 ~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~---~~~~~~~~~~-i~~~~i~~~~~ln~~Gvk~~~~~ 190 (501)
T TIGR00911 116 EVFGPLLA-FLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD---CEVPEWAIRL-VAVLCVLLLTLVNCLSVKWATRV 190 (501)
T ss_pred hHhCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCCchHHHHH-HHHHHHHHHHHHHHhhhHHHHHH
Confidence 89999877 555544332 2223333344444444321 1111 0001111111 11111111112222344555555
Q ss_pred HHHHHHHHHHHHhheeeee---eeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCC
Q 016636 190 SLAAAVMSLSYSTIAWSAS---VRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (385)
Q Consensus 190 s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~ 266 (385)
+.+..+..+..++++++.. ...+...+.+..........++.++..++...+|+|.|.+.+..+.+|+ |||+|
T Consensus 191 ~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~----knP~r 266 (501)
T TIGR00911 191 QDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEV----KNPYR 266 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHh----cCchh
Confidence 5544443332211111111 1111111111100000111345678889999999999999999999999 78876
Q ss_pred CCCchhhhHHHHHHHHHHHhHHhHhhhcc
Q 016636 267 GPMWRGVVVAYIVVALCYFPVALIGYWMF 295 (385)
Q Consensus 267 ~~~~~~~~~s~~~~~~~Y~~~g~~gy~~f 295 (385)
+++|++..+..++.++|++..+......
T Consensus 267 -~iPrAi~~s~~~v~~~Y~l~~~a~~~~~ 294 (501)
T TIGR00911 267 -TLPIAIIISMPIVTFIYVLTNIAYFTVL 294 (501)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999876654444
No 38
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.34 E-value=5.8e-11 Score=116.92 Aligned_cols=241 Identities=16% Similarity=0.173 Sum_probs=144.9
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHH-HHhhCc-hHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGW-GPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~-~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~ 112 (385)
+.+|+.|.++.....++.++|+|++..|.. ....|- ...++.+++.+++.......+.|.....|+.. ......++
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~G--G~y~y~~~ 82 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENG--ADYVYLKN 82 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CceeeHHH
Confidence 467899999999999999999999999876 444563 23566778888888889999999877677654 45556778
Q ss_pred hcCccccccchhHHHHH-HhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHH
Q 016636 113 AFGEKLGLYIVVPQQLI-VEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSL 191 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 191 (385)
.+||.++ ++..+.... ........+....++++....+. .... .....+..++.+-..-.+..+...+++.
T Consensus 83 ~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~------~~~~-~~~~~~~~~~~~~~ln~~gv~~~~~v~~ 154 (445)
T PRK11357 83 AGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLTPI------DPLL-GKFIAAGLIIAFMLLHLRSVEGGAAFQT 154 (445)
T ss_pred hcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------chHH-HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 8998877 566554332 22223334444555554322110 0010 0111111111121122234444444444
Q ss_pred HHHHHHHHHHhheee--eeeeecCCCCccccccc-ccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCC
Q 016636 192 AAAVMSLSYSTIAWS--ASVRKGVQPDVAYGYKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (385)
Q Consensus 192 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~ 268 (385)
+..+..+..++++++ .....+ ++.....+. .....++.++..++....|+|.|.+......+|+ |||+| +
T Consensus 155 ~~~~~~~~~l~~~ii~g~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k~P~r-~ 227 (445)
T PRK11357 155 LITIAKIIPFTIVIGLGIFWFKA--ENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEI----KNPGK-T 227 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC--ccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHh----cCccc-c
Confidence 443322221111111 111111 111100000 0111235678888999999999999999999999 88987 7
Q ss_pred CchhhhHHHHHHHHHHHhHHhHhh
Q 016636 269 MWRGVVVAYIVVALCYFPVALIGY 292 (385)
Q Consensus 269 ~~~~~~~s~~~~~~~Y~~~g~~gy 292 (385)
++|++..++.++.++|++......
T Consensus 228 iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 228 MPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999998776544
No 39
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.30 E-value=1.7e-10 Score=114.77 Aligned_cols=289 Identities=12% Similarity=0.120 Sum_probs=171.5
Q ss_pred cCCCchhHHHHHHHHhhhhhhhhhHH-HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcC-CcccccHHHHHHHhc
Q 016636 37 SRNAKWWYSAFHNVTAMVGAGVLSLP-YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP-GKRFDRYHELGQHAF 114 (385)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP-~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~-~~~~~~y~~i~~~~~ 114 (385)
+|+.+.++.....++.++|+|++..| .+.+..|....++.+++.+++.......+.|...+.| ... .|...+++.+
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG--~~~~~~~~~~ 78 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG--SFATYASRFV 78 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CHHHHHHHHc
Confidence 36789999999999999999999777 5567777543466788888888888999999887777 333 6888999999
Q ss_pred CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 016636 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (385)
|+++| ++..+..++.....+.+.....+.++..+.+ ......+..+..++.. +.-.+..+...+++....
T Consensus 79 g~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~-~in~~gv~~~~~~~~~~~ 148 (478)
T TIGR00913 79 DPAFG-FAVGWNYWLQWLIVLPLELVTASMTIQYWTD--------KVNPAVWIAIFYVFIV-IINLFGVKGYGEAEFWFS 148 (478)
T ss_pred CcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCCHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHH
Confidence 99988 7888887776666666666655555443211 1112223322222211 112234444444443332
Q ss_pred HHHH---HH-HhheeeeeeeecCCCC-ccc-cc--cccccc----chhhhHHHHHhhHHhhccCceeehhccccCCCCCC
Q 016636 195 VMSL---SY-STIAWSASVRKGVQPD-VAY-GY--KAKTAA----GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPE 262 (385)
Q Consensus 195 ~~~~---~~-~~~~~~~~~~~~~~~~-~~~-~~--~~~~~~----~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~ 262 (385)
...+ +. .++.+.........++ ... .. ++...+ ..+.++..++....|+|.|.+......+|+ |
T Consensus 149 ~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~----k 224 (478)
T TIGR00913 149 SIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEA----A 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhh----c
Confidence 2111 11 1111111000000000 000 00 000111 136678889999999999999999999999 8
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcch-------------hh---HhhcCCCchHHHHHHHHHHHHHHH
Q 016636 263 KPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE-------------DN---ILLSLEKPTWLIVMANFFVVVHVI 326 (385)
Q Consensus 263 ~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~-------------~~---il~~~~~~~~~~~~~~~~~~~~~~ 326 (385)
||+| +++|++..+..++.++|++..+......+.+.. ++ ..++.. ..+...+..++..+..+
T Consensus 225 nP~r-~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g-~~~~~~~~~~~~~~s~~ 302 (478)
T TIGR00913 225 NPRK-SIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHG-IKVLPHIFNAVILISVL 302 (478)
T ss_pred Chhh-HHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcC-CchHhHHHHHHHHHHHH
Confidence 8877 799999999999999999876543333321110 11 112222 12334455555556655
Q ss_pred HhhhccccchHHHHHHH
Q 016636 327 GSYQIYAMPVFDMIETL 343 (385)
Q Consensus 327 ~s~pl~~~p~~~~l~~~ 343 (385)
.+.--.+....+.+..+
T Consensus 303 ~~~~~~~~~~sR~l~a~ 319 (478)
T TIGR00913 303 SAANSSLYASSRTLYAL 319 (478)
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 55555555555555554
No 40
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.30 E-value=1.7e-10 Score=108.60 Aligned_cols=285 Identities=14% Similarity=0.186 Sum_probs=188.1
Q ss_pred CCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccc
Q 016636 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (385)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~ 118 (385)
|.|..|....+..+++|+|++.+|....+.+ --|++..++.+........++.+..+++|++ +..|+.++.+||..
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~---~l~~~~~~~~Gk~l 76 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRFPGK---TLVEISEKLFGKWL 76 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHhCcHH
Confidence 5788999999999999999999998866554 1344555555555555666666655556664 89999999999988
Q ss_pred cccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhH-HHHHHHHHhhCCCCchhhHHHHHHHHHHH
Q 016636 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIM-IFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (385)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 197 (385)
| .++.....+..+......+...++.+....-. ++..+.+ ...+++.-....+.++.+.+.+.+-....
T Consensus 77 g-~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp---------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~ 146 (320)
T PF03845_consen 77 G-KIINLLYILYFLLISALVLREFSEFIKTYLLP---------ETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIF 146 (320)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------cCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 8 46666666666666555555555554443211 1223333 33334444455678999998777666655
Q ss_pred HHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhhHHH
Q 016636 198 LSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAY 277 (385)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~ 277 (385)
++....+......+. ++..-.+..+.++.++..+.....+.|.+.....-+...+ ++|+| .+|....+.
T Consensus 147 ~i~~~~i~~~~~~~~-----~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~----~~~~~--~~k~~~~~~ 215 (320)
T PF03845_consen 147 LILLLLILLLSIPNI-----DWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFV----KDKKK--LKKSLLIAI 215 (320)
T ss_pred HHHHHHHHHHhcccC-----CHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHc----CCchH--HHHHHHHHH
Confidence 544443333333221 2211123345678888988888889999888888888888 55554 459999999
Q ss_pred HHHHHHHHhHHhHhhhccCCcchh-------hHhhcCCCc---hHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHhhh
Q 016636 278 IVVALCYFPVALIGYWMFGNKVED-------NILLSLEKP---TWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKK 347 (385)
Q Consensus 278 ~~~~~~Y~~~g~~gy~~fG~~~~~-------~il~~~~~~---~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~~~ 347 (385)
.+..++|...-+.....||.+..+ +.....+-+ +..-.+...........+..+..+-+.+.+.+.+..+
T Consensus 216 ~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~ 295 (320)
T PF03845_consen 216 LISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLK 295 (320)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999965333 111222111 1122334445556667788889999999999988555
Q ss_pred c
Q 016636 348 L 348 (385)
Q Consensus 348 ~ 348 (385)
+
T Consensus 296 ~ 296 (320)
T PF03845_consen 296 D 296 (320)
T ss_pred C
Confidence 4
No 41
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.27 E-value=2.7e-11 Score=114.33 Aligned_cols=294 Identities=15% Similarity=0.127 Sum_probs=199.9
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhh-hHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL-~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+.+|+.+.++.-+.-++..||+|.+ .-..+.+.+|-. -++..++++++.++-++.+.|...+.|..+ |+.+++++.
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~~p~~g--SF~~~a~~~ 86 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVANPVSG--SFSDYARKY 86 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--cHHHHHHHH
Confidence 4678889999999999999999995 777889999964 356668999999999999999877667665 999999999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHH--HHhhCCCCchhhHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH--FVLSHLPNFNAIAGVSL 191 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~--~pl~~~~~l~~l~~~s~ 191 (385)
+|+++| ++.++..+.....++++.+..++.+++..++.. .+..+.+....++ .-+...|.+.++.+.-.
T Consensus 87 lG~~Ag-f~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--------P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA 157 (462)
T COG1113 87 LGPWAG-FLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--------PQWVFALAAVVLLLAVNLISVKVFGELEFWFA 157 (462)
T ss_pred hcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988 899999999999999999999999988887663 2233333333333 44555666777764433
Q ss_pred HHHHHHHHHHhheeeeeeeecCCC-----Cccccc-ccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCC
Q 016636 192 AAAVMSLSYSTIAWSASVRKGVQP-----DVAYGY-KAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPS 265 (385)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~ 265 (385)
+--+..++.++++-...+..+... +.+.-. +.-..|+++.+++.++.+.+|||.+.+.+-....|. +||+
T Consensus 158 lIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et----~dP~ 233 (462)
T COG1113 158 LIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA----KDPE 233 (462)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh----cChh
Confidence 333322222221111111111111 111111 222357789999999999999999999999999999 7887
Q ss_pred CCCCchhhhHHHHHHHHHHH-----hHHhHhhhccCCcchh--hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHH
Q 016636 266 KGPMWRGVVVAYIVVALCYF-----PVALIGYWMFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (385)
Q Consensus 266 ~~~~~~~~~~s~~~~~~~Y~-----~~g~~gy~~fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~ 338 (385)
| .++|++.-...-..++|+ +..+.-+-.++++.++ .+...+.- .+...+.++......+.+.-=-++...+
T Consensus 234 k-~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi-~~Aa~i~N~VVLtAa~S~~NSglystsR 311 (462)
T COG1113 234 K-AIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGI-PFAAGIMNFVVLTAALSALNSGLYSTSR 311 (462)
T ss_pred h-HHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCC-cccccceeEEEeechhhcccccccccch
Confidence 7 677777655555555555 3444445455554443 23333322 2344455555566666677777788888
Q ss_pred HHHHHHhh
Q 016636 339 MIETLLVK 346 (385)
Q Consensus 339 ~l~~~~~~ 346 (385)
++..+-.+
T Consensus 312 mL~~la~~ 319 (462)
T COG1113 312 MLYSLAKQ 319 (462)
T ss_pred HHHHHhhc
Confidence 87777533
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.27 E-value=7.2e-11 Score=115.62 Aligned_cols=292 Identities=13% Similarity=0.156 Sum_probs=183.8
Q ss_pred CchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHH-HHHHHHHHHcchhcCCcccccHHHHHHHhcCccc
Q 016636 40 AKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKL 118 (385)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~-~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~ 118 (385)
.|++++....++.++|+|+...| .....|.. .++..++.+++. ......+.|...+.|+++ ......++.+||++
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~~G--G~y~~~~~~~g~~~ 76 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPSAG--GIYVWVSRAFGPFW 76 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTSST--THHHHHHHHH-HHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcC--eeeehhhhcccccc
Confidence 36889999999999999999999 66666664 566666666666 577888888766677766 88899999999998
Q ss_pred cccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHHH
Q 016636 119 GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSL 198 (385)
Q Consensus 119 ~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~ 198 (385)
| ++..+...+.......++.....+++...+....++ ..+. ...+.+..++..-..-.+..+..++++....+..+
T Consensus 77 g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i 152 (426)
T PF13520_consen 77 G-FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNP--SPWP-QFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKI 152 (426)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTC--SHHH-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred h-hcccceeEEEeeccccccccchhhhhhhcccccccc--ccch-heeeeecccccceEeeechhhhhhhhhhhhhhhhh
Confidence 8 777777777776666666666666655443221100 0111 11111222222223333456666666665555444
Q ss_pred -HHHhheeeeeeeecCCCCccc--ccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhhH
Q 016636 199 -SYSTIAWSASVRKGVQPDVAY--GYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVV 275 (385)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~ 275 (385)
..+++.++..+.....+.... ...+...+..+..+..++....|+|.|.+..+...+|+ || |+++|++..
T Consensus 153 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~----k~---k~ip~ai~~ 225 (426)
T PF13520_consen 153 VIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEEN----KN---KTIPRAIII 225 (426)
T ss_dssp HHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS----SS---HHHHHHHHH
T ss_pred hhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccc----cc---hhheeeccc
Confidence 222222222222221111110 00111223344467899999999999999999999998 44 368899999
Q ss_pred HHHHHHHHHHhHHhHhhhccCCcchh---h-------HhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHh
Q 016636 276 AYIVVALCYFPVALIGYWMFGNKVED---N-------ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (385)
Q Consensus 276 s~~~~~~~Y~~~g~~gy~~fG~~~~~---~-------il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~ 345 (385)
+..++.++|.+.........+++..+ + ..+... +++...+..+...+..+.+....+....+.+..+-.
T Consensus 226 ~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~ 304 (426)
T PF13520_consen 226 SIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVG-GSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR 304 (426)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHH-CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhhhhheeeecccchhhhcccccccccchhhcccc-ccccccccccccccccccccchhhcchhhccccccc
Confidence 99999999999987777776553221 1 111111 135566677777778888888888888777777755
Q ss_pred hh
Q 016636 346 KK 347 (385)
Q Consensus 346 ~~ 347 (385)
++
T Consensus 305 d~ 306 (426)
T PF13520_consen 305 DG 306 (426)
T ss_dssp TT
T ss_pred cc
Confidence 44
No 43
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.25 E-value=2.9e-10 Score=111.87 Aligned_cols=277 Identities=14% Similarity=0.136 Sum_probs=165.9
Q ss_pred HHHhhhhhhhhhHHH-HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccccccchhHHH
Q 016636 49 NVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQ 127 (385)
Q Consensus 49 l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~~~~~~~~~~ 127 (385)
.++++||+|++..|. +.++.|. ..++.+++.+++.......+.|.....|..+ +..+.+++.+||.+| +++.+..
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~~G--g~y~y~~~~~G~~~g-f~~gw~~ 78 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPDTG--SFSTYADKAIGRWAG-YTIGWLY 78 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--CHHHHHHHHcChHHH-HHHHHHH
Confidence 467899999998886 6778886 4788899999999999999999887777766 889999999999888 7777777
Q ss_pred HHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHhheee-
Q 016636 128 LIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWS- 206 (385)
Q Consensus 128 ~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~- 206 (385)
++.....+.......+..+... .+ ......+.+++.++...+ -....+..+.+.....+.-++.++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~l~~~~~l-N~~gv~~~~~i~~~~~~~ki~~li~~ii~ 149 (446)
T PRK10197 79 WWFWVLVIPLEANIAAMILHSW----VP----GIPIWLFSLVITLALTGS-NLLSVKNYGEFEFWLALCKVIAILAFIFL 149 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----cc----cCcHHHHHHHHHHHHHHH-HHHhhHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 6655444443333333332222 11 111111122222111111 1223333333333332211111111111
Q ss_pred -eeeeecCCC-----Ccccccc-cccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhhHHHHH
Q 016636 207 -ASVRKGVQP-----DVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIV 279 (385)
Q Consensus 207 -~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~ 279 (385)
.....+..+ +..+..+ +...+.++.++..++....|+|.|.+.+....+|+ |||+| +++|++..+...
T Consensus 150 ~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~----knP~r-~iPrai~~~~~~ 224 (446)
T PRK10197 150 GAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAES----DTPEK-HIVRATNSVIWR 224 (446)
T ss_pred HHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHh----cChhh-hHHHHHHHHHHH
Confidence 100111111 0000010 11124567789999999999999999999999999 78876 789999999999
Q ss_pred HHHHHHhHHhHhhhc--cCCcc----h--hhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHH
Q 016636 280 VALCYFPVALIGYWM--FGNKV----E--DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLL 344 (385)
Q Consensus 280 ~~~~Y~~~g~~gy~~--fG~~~----~--~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~ 344 (385)
..++|+...+..... +.+.. . ......... .+...+..+...+..+.+..-.++...+.+..+-
T Consensus 225 i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~-~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~a 296 (446)
T PRK10197 225 ISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNI-PHAKLIMDCVILLSVTSCLNSALYTASRMLYSLS 296 (446)
T ss_pred HHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999876553333 32211 1 122333432 3445566666667767777767777777766664
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.19 E-value=1.2e-09 Score=108.08 Aligned_cols=295 Identities=15% Similarity=0.214 Sum_probs=182.8
Q ss_pred cccCCCchhH-HHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWY-SAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~-~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+.+|+.+.++ ......+.++|.|++.+|......+ ....+.+++.+++.......+.|.....|+.. .+.+..++.
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--G~y~~~~~~ 85 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPSAG--GAYAYAKRA 85 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--Ceeeehhhh
Confidence 4567778888 8899999999999999998887765 22333356666666666788888776677766 788999999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHH--HhhCCCCchhhHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHF--VLSHLPNFNAIAGVSL 191 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~--pl~~~~~l~~l~~~s~ 191 (385)
+|++.+ +.......+.......+........+..+.+...... .....+..+..++.. -+.-.+..+...+...
T Consensus 86 ~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~~~~ 161 (466)
T COG0531 86 LGPRLG-FLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLS---IGPLLIILIALALIALLTLLNLRGIKASAKINS 161 (466)
T ss_pred cCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhc---CCchHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 998888 7888888887777777777777775555554311000 000122222222222 2222234555555555
Q ss_pred HHHHHHHHHHhheeeeeeeecCCCCccccccc-ccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCc
Q 016636 192 AAAVMSLSYSTIAWSASVRKGVQPDVAYGYKA-KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMW 270 (385)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~ 270 (385)
...+..++..+++.+.......... ...... ......+..+..++....++|.|.+...+..+|+ |||+| +++
T Consensus 162 ~~~~~~i~~~i~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~----knp~r-~ip 235 (466)
T COG0531 162 IITILKIIILLIFIILGLFAFGFSN-GNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEV----KNPKR-TIP 235 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccc-cccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHh----cCccc-ccc
Confidence 4444333322222222222111111 001100 0012244478899999999999999999999999 77766 588
Q ss_pred hhhhHHHHHHHHHHHhHHhHhhhccCCc-ch-----h---hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 016636 271 RGVVVAYIVVALCYFPVALIGYWMFGNK-VE-----D---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (385)
Q Consensus 271 ~~~~~s~~~~~~~Y~~~g~~gy~~fG~~-~~-----~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~ 341 (385)
|++..++.++.++|.+..+......+++ .. . ....... +.+...+..+...+..+.+..-......+.+.
T Consensus 236 ~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~ 314 (466)
T COG0531 236 RAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGG-GNWGAIIIAILALLSLFGSLLAWILAVSRVLY 314 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998888877752 11 1 1111111 23556666666667766666555555555544
Q ss_pred HH
Q 016636 342 TL 343 (385)
Q Consensus 342 ~~ 343 (385)
.+
T Consensus 315 ~~ 316 (466)
T COG0531 315 AM 316 (466)
T ss_pred HH
Confidence 44
No 45
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.14 E-value=7.9e-10 Score=109.77 Aligned_cols=305 Identities=11% Similarity=0.066 Sum_probs=205.1
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhh-hHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCc-ccccHHHHHH
Q 016636 34 ITSSRNAKWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGK-RFDRYHELGQ 111 (385)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL-~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~-~~~~y~~i~~ 111 (385)
.+.+|+.+.++..+.-++.++|+|++ ....+.++.|-..-++..++.++....+...+.|..-..|.. . ++..+++
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG--s~~~ya~ 103 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG--SFYTYAY 103 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc--cceeeee
Confidence 35688899999999999999999997 666788888887777778888899999999999988777863 4 6788888
Q ss_pred HhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHH-HhhcCCCccccchhhhHHH--HHHHHHhhCCCCchhhHH
Q 016636 112 HAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHE-LLCKEPCKEIKLSYFIMIF--ASVHFVLSHLPNFNAIAG 188 (385)
Q Consensus 112 ~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~-~~~~~~~~~~~~~~~~~i~--~~i~~pl~~~~~l~~l~~ 188 (385)
+..|+-++ +++.+-.++..+..+.+.....+.+++.+.. ..........+...|..++ ..+++.+...+-..+.++
T Consensus 104 ~~i~e~~a-F~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 104 RFVGESLA-FAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eeeCcHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 88999888 8888888898888999999999988888760 0000000111222233322 222233333444344444
Q ss_pred HHHHHHHHHH---HHHhheeeeeeeecCCCCcc---c-ccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCC
Q 016636 189 VSLAAAVMSL---SYSTIAWSASVRKGVQPDVA---Y-GYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTP 261 (385)
Q Consensus 189 ~s~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~ 261 (385)
......+..+ +...+++.....+....+.. + ..+....+.++.++..++-+..|+|.|.+.+-....|-
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~---- 258 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA---- 258 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc----
Confidence 4443333222 22222333322222111111 1 11122334458899999999999999999999999999
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhHHhHhhhc--cCCc-chhhH------hhcCCCchHHHH---HHHHHHHHHHHHhh
Q 016636 262 EKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM--FGNK-VEDNI------LLSLEKPTWLIV---MANFFVVVHVIGSY 329 (385)
Q Consensus 262 ~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~--fG~~-~~~~i------l~~~~~~~~~~~---~~~~~~~~~~~~s~ 329 (385)
|||+| .+|+++..++..++++|....+.--+. |.|. ..++. ..... ..+... +.++..++.+..+-
T Consensus 259 kNP~k-~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~-~~~~k~~~~ivna~iL~~~~s~~ 336 (554)
T KOG1286|consen 259 KNPRK-AIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIG-NAGAKYLPHIVNAGILIGLLSSL 336 (554)
T ss_pred cCCcc-cccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHh-ccCccccchhhhHHHHHHHHHHH
Confidence 88886 799999999999999999887655443 3331 11111 10111 122344 88888999999999
Q ss_pred hccccchHHHHHHHHhhh
Q 016636 330 QIYAMPVFDMIETLLVKK 347 (385)
Q Consensus 330 pl~~~p~~~~l~~~~~~~ 347 (385)
--.+++.-+.+..+-.++
T Consensus 337 n~~~y~~sR~l~amA~~G 354 (554)
T KOG1286|consen 337 NSSLYAGSRVLYALAKDG 354 (554)
T ss_pred HHHhHHhHHHHHHHHhcC
Confidence 999999999998885443
No 46
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.11 E-value=5.9e-09 Score=100.72 Aligned_cols=297 Identities=12% Similarity=0.159 Sum_probs=205.9
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhh-hHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL-~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+.+|+.+.+...+.-++..||+|++ +.-.+.+++|-...++..++.+.+.+..+.-+.|++...|... +|..++.+.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sG--sF~~ya~rf 118 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSG--SFSTYATRF 118 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--chhhhhhhh
Confidence 4668888999999999999999996 8889999999998889999999999999999999887777544 799999999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHh--hCCCCchhhHH-HH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVL--SHLPNFNAIAG-VS 190 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl--~~~~~l~~l~~-~s 190 (385)
.++.+| +.+.+..++....++...++..+..++...+.. .+...|+.++.++++.+ .-.|...+..+ +|
T Consensus 119 vdpa~G-Fa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~-------v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s 190 (541)
T COG0833 119 VDPAFG-FALGWNYWLNWAVTLPLELTAASLVIQYWFPDT-------VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFS 190 (541)
T ss_pred cCchHH-HHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC-------CChHHHHHHHHHHHHHHHHhcccccceehHHHH
Confidence 998888 788888888877777777777776665554331 34467787776666544 44566666553 33
Q ss_pred HHHHHHHHHHHhh--eeeeeeeecCCCCcccc-cc-cccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCC
Q 016636 191 LAAAVMSLSYSTI--AWSASVRKGVQPDVAYG-YK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (385)
Q Consensus 191 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~ 266 (385)
.+=++.++.++++ ++.+..... ....... ++ +...++++.++...+-+..|||.|.+.+--...|- +||+|
T Consensus 191 ~iKV~~ii~Fii~gii~~~Gg~~~-~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs----~nP~K 265 (541)
T COG0833 191 SIKVLTIIGFIILGIIIICGGGPT-HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGES----ENPRK 265 (541)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCC-CCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeeccc----CCchh
Confidence 3333322222221 111111111 1111111 11 22345678899999999999999999999999998 78877
Q ss_pred CCCchhhhHHHHHHHHHHHhHHh-Hhhh-ccCCc----------chhhHhhcCCC--chHHHHHHHHHHHHHHHHhhhcc
Q 016636 267 GPMWRGVVVAYIVVALCYFPVAL-IGYW-MFGNK----------VEDNILLSLEK--PTWLIVMANFFVVVHVIGSYQIY 332 (385)
Q Consensus 267 ~~~~~~~~~s~~~~~~~Y~~~g~-~gy~-~fG~~----------~~~~il~~~~~--~~~~~~~~~~~~~~~~~~s~pl~ 332 (385)
.+||++--..--..++|+..-+ .|.+ -|.|. ..++....+.+ -...-.+.+...+++++.+--=.
T Consensus 266 -~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~ 344 (541)
T COG0833 266 -SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSG 344 (541)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhcc
Confidence 7899998888888888876543 3333 34331 11122222211 12345677888888888888888
Q ss_pred ccchHHHHHHHHhhh
Q 016636 333 AMPVFDMIETLLVKK 347 (385)
Q Consensus 333 ~~p~~~~l~~~~~~~ 347 (385)
++...+++..+-.++
T Consensus 345 lYasSR~L~sLA~~g 359 (541)
T COG0833 345 LYASSRMLYSLAKQG 359 (541)
T ss_pred chHHHHHHHHHHhcC
Confidence 999999998886544
No 47
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.02 E-value=8.7e-08 Score=95.21 Aligned_cols=253 Identities=11% Similarity=0.032 Sum_probs=145.5
Q ss_pred cccCCCchhHHHHHHHHhh-hhhhhhhHHH-HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAM-VGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~-iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~ 112 (385)
+.+|+.|.++.+..-++.+ +|+|+...+. +....|- ..+..+++.++........+.|...+.|... ..+..+++
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~aG--G~Y~~~~~ 86 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPISG--AIYQWSRR 86 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--CHHHHHHH
Confidence 4678899999988888875 8999987775 4556666 4567778888888888999999887788765 77888899
Q ss_pred hcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhh--c-CCCc--cccc--hhhhHHHHHHHHHhhCCCCchh
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC--K-EPCK--EIKL--SYFIMIFASVHFVLSHLPNFNA 185 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~--~-~~~~--~~~~--~~~~~i~~~i~~pl~~~~~l~~ 185 (385)
.+|+.++ ++..+...+.......+.......++..+.+... + ++.. .... ...+.+...++.-+.-.+..+.
T Consensus 87 ~~g~~~g-f~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~k~ 165 (475)
T TIGR03428 87 MGGEVIG-WFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGVEW 165 (475)
T ss_pred HcCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 9999888 7777777665544333333333333333321111 0 0000 0000 1111111111111112223444
Q ss_pred hHHHHHHHHHHHHHHHhheeeeeeeecCC-CCcccccc-cccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCC
Q 016636 186 IAGVSLAAAVMSLSYSTIAWSASVRKGVQ-PDVAYGYK-AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEK 263 (385)
Q Consensus 186 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~ 263 (385)
..+++.+..+..+..++++++........ +....... ....+.....+..+.....|+|.|.+....+.+|+ ||
T Consensus 166 ~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~----kn 241 (475)
T TIGR03428 166 MSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEET----KN 241 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHh----cC
Confidence 45554444432222111111111111111 11000000 01111123345567777889999999999999999 88
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhHHhHhhhccC
Q 016636 264 PSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 296 (385)
Q Consensus 264 p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG 296 (385)
|+| +++|++..+..+..++|.+.-+......+
T Consensus 242 P~r-~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 242 PRR-VAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred cch-hhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 977 79999999999888777666555444444
No 48
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.92 E-value=6.4e-09 Score=103.44 Aligned_cols=283 Identities=14% Similarity=0.198 Sum_probs=165.5
Q ss_pred HHHhhhhhhhh-hHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccccccchhHHH
Q 016636 49 NVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQ 127 (385)
Q Consensus 49 l~~~~iG~GiL-~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~~~~~~~~~~ 127 (385)
.+..++|+|++ ..+.+..+.|....++..++.+++...+..-+.|...+.|... ++.+++++.+|+..| ....+..
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~G--g~y~y~~~~lg~~~G-f~~gw~y 82 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAG--GFYAYASRGLGPALG-FAAGWAY 82 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcccc--chhhhhhhccCCcCC-ceeeHHH
Confidence 46778999986 6677888999877778889999999999999999887777655 888999999999999 6777776
Q ss_pred HHHhhhhhhhhhhhhccchHHH--HHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHhhee
Q 016636 128 LIVEVGVCIVYMVTGGKSLHKV--HELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAW 205 (385)
Q Consensus 128 ~~~~~g~~~~y~i~~~~~l~~l--~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~ 205 (385)
++.............+..++.. .+... ....+.. .+..++.+++..+.+ ...+....+...-....++..+..+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~~~li~~i 158 (478)
T PF00324_consen 83 WLSYIAAIAAEATAAGSFLQFWGYFPGLP--STWVWGI-LIAIIFILLITLLNL-FGVRVSGKIEFILTIIKLIALIAFI 158 (478)
T ss_pred HHHHHHHHHhhhhhhhhhhcccccccccc--ccccccc-hhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhhhHhhhhh
Confidence 6666555555555555444433 11110 0010111 112222222222221 1222222222221111111111111
Q ss_pred eee-e--eecCCCCcc--c----c----ccc---ccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCC
Q 016636 206 SAS-V--RKGVQPDVA--Y----G----YKA---KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (385)
Q Consensus 206 ~~~-~--~~~~~~~~~--~----~----~~~---~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~ 269 (385)
+.. + ..+..+... . . .++ .....++.++..++...+++|.|.+......+|. |||+| ++
T Consensus 159 i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~----k~P~k-~I 233 (478)
T PF00324_consen 159 IVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA----KNPRK-TI 233 (478)
T ss_pred hhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccC----CCchh-hh
Confidence 111 1 111111111 0 0 000 0112347889999999999999999999999999 78877 79
Q ss_pred chhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHh-----------hcCCCchHHHHHHHHHHHHHHHHhhhccccchHH
Q 016636 270 WRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNIL-----------LSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (385)
Q Consensus 270 ~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il-----------~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~ 338 (385)
+|.+..++....++|+......-...+.+.....- .+.....+...+.++....+.+.+.--.++...+
T Consensus 234 Pra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR 313 (478)
T PF00324_consen 234 PRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASR 313 (478)
T ss_pred hhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcccce
Confidence 99999999999999999887766666644322111 1111123444555555555555555545555554
Q ss_pred HHHHH
Q 016636 339 MIETL 343 (385)
Q Consensus 339 ~l~~~ 343 (385)
.+..+
T Consensus 314 ~l~am 318 (478)
T PF00324_consen 314 LLYAM 318 (478)
T ss_pred eehhh
Confidence 44444
No 49
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.91 E-value=3.2e-07 Score=91.39 Aligned_cols=254 Identities=13% Similarity=0.056 Sum_probs=138.5
Q ss_pred cccCCCchhHHHHHHHHhhhh--hhhh-hHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVG--AGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ 111 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG--~GiL-~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~ 111 (385)
+.+|+.|.++.+...+. ++| +|+. ..+.+....|-...++.+++.+++.......+.|.....|... +....++
T Consensus 9 ~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~G--g~y~~~~ 85 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSG--GQYFWSA 85 (482)
T ss_pred eeecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCc--cHHHHHH
Confidence 45678888888777777 444 6765 4445677778755577888899999999999999887788765 7888888
Q ss_pred HhcCccccccc---hhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHH--HHhhCCCCchhh
Q 016636 112 HAFGEKLGLYI---VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH--FVLSHLPNFNAI 186 (385)
Q Consensus 112 ~~~G~~~~~~~---~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~--~pl~~~~~l~~l 186 (385)
+.+|+++|+.. ..+...+.....+.+.....++++..+.....+......+......+..++. +-+.-.+..+.+
T Consensus 86 ~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~k~~ 165 (482)
T TIGR00907 86 KLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPTKWL 165 (482)
T ss_pred HhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhHhHH
Confidence 88887665433 3344444444444444555555555443321111000011111122221111 111111233444
Q ss_pred HHHHHHHHHHHHHHHh-heee-eeeeecCCCCccccccccc-----ccchhhhHHHHHhhHHhhccCceeehhccccCCC
Q 016636 187 AGVSLAAAVMSLSYST-IAWS-ASVRKGVQPDVAYGYKAKT-----AAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS 259 (385)
Q Consensus 187 ~~~s~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~ 259 (385)
.++.....+..++..+ +.+. .........+.+....+.. +..+-..+..++....|+|.|.+......+|+
T Consensus 166 ~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~-- 243 (482)
T TIGR00907 166 PRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEI-- 243 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhc--
Confidence 4444333332222111 1111 1111111011011110000 01111245556666789999999999999999
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhHHhHhhhccC
Q 016636 260 TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFG 296 (385)
Q Consensus 260 ~~~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG 296 (385)
|||+| +++|++..+..+..+++.+..+..+...+
T Consensus 244 --knP~r-~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~ 277 (482)
T TIGR00907 244 --ENPEV-VGPRAIIGAVAIGIVTGFCFNIVLFFSMG 277 (482)
T ss_pred --CChhh-hcCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88877 79999999988877665554444444444
No 50
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.72 E-value=6.8e-07 Score=89.38 Aligned_cols=238 Identities=11% Similarity=0.038 Sum_probs=119.9
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHH--HHHHHHHHcchhcC-CcccccHHHHHHH
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITL--YTLWQMVEMHEMVP-GKRFDRYHELGQH 112 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~--~s~~~l~~~~~~~~-~~~~~~y~~i~~~ 112 (385)
+++|.|.++.++..+.+.. ++-.+| .+++.|+ +.+.+.+++.+.+ -....+.|.....+ ... .....+++
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G--G~y~wv~~ 74 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG--GIFAWVSN 74 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC--Ceeeehhh
Confidence 3567888888877777665 556888 4667785 4455555555543 36777788766444 433 67788899
Q ss_pred hcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHH--HHHhhCCCCchhhHHHH
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASV--HFVLSHLPNFNAIAGVS 190 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i--~~pl~~~~~l~~l~~~s 190 (385)
.+|+++| ++..+..++.......+........+..+... +. ...+.....++..++ .+-+.-.+..+...+++
T Consensus 75 a~G~~~G-f~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~---~~-~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~ 149 (507)
T TIGR00910 75 TLGERFG-FAAIFFGWFQIAIGFIPMIYFILGALSYILKF---PA-LNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIA 149 (507)
T ss_pred ccCccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ch-hccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999988 55544444433211111111111111111110 00 001111111111111 12222233444444444
Q ss_pred HHHHHHHH-HHHh--heee-eeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCC
Q 016636 191 LAAAVMSL-SYST--IAWS-ASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK 266 (385)
Q Consensus 191 ~~~~~~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~ 266 (385)
.++.+... +..+ +++. .....+.........+...+.....+....+....|+|.|.+......+|+ |||+|
T Consensus 150 ~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~----knP~r 225 (507)
T TIGR00910 150 KAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINEL----ENPGR 225 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHc----cCCcc
Confidence 43322111 1111 1111 111112111101000000011111123445555689999999999999999 88977
Q ss_pred CCCchhhhHHHHHHHHHHHhHHhH
Q 016636 267 GPMWRGVVVAYIVVALCYFPVALI 290 (385)
Q Consensus 267 ~~~~~~~~~s~~~~~~~Y~~~g~~ 290 (385)
+++|++..++.+..++|.+..+.
T Consensus 226 -~~PrAi~~~~i~~~~l~~l~~~~ 248 (507)
T TIGR00910 226 -DYPLAMILLMIAAICLDAIGGFS 248 (507)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999875543
No 51
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.70 E-value=6e-08 Score=81.65 Aligned_cols=210 Identities=18% Similarity=0.249 Sum_probs=133.8
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchh---------cCCc---c------
Q 016636 41 KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM---------VPGK---R------ 102 (385)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~---------~~~~---~------ 102 (385)
|-.-....+.|-++|+|-|++|.+|+..||.+++.++.+.++.++.+....+|+... ..+. +
T Consensus 13 sq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~st 92 (319)
T KOG3832|consen 13 SQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDEST 92 (319)
T ss_pred hhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccc
Confidence 334556788999999999999999999999999999999999999998888775210 0000 0
Q ss_pred ------------------------------------cccHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccch
Q 016636 103 ------------------------------------FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSL 146 (385)
Q Consensus 103 ------------------------------------~~~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l 146 (385)
+...++++...|. |.|.-+..++++++++|....|...+-...
T Consensus 93 asd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffn-kvgln~fyf~iiiylfgdlaiyaaavpfs~ 171 (319)
T KOG3832|consen 93 ASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFN-KVGLNFFYFAIIIYLFGDLAIYAAAVPFSA 171 (319)
T ss_pred cCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHH-hhhHHHHHHHHHHHHhhhhhhhhhcCchHh
Confidence 0124678888886 467678889999999999998887776655
Q ss_pred HHHHHHhhc-CCC-------cc-----c--------cchhhhHHHHH-HHHHhhCCCCchhhHHHHHHHHHHHHHHHhhe
Q 016636 147 HKVHELLCK-EPC-------KE-----I--------KLSYFIMIFAS-VHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIA 204 (385)
Q Consensus 147 ~~l~~~~~~-~~~-------~~-----~--------~~~~~~~i~~~-i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~ 204 (385)
-++.....+ +.| .+ | .++++++++.+ +.+|+.+. ++++.+++..+....--. ..+
T Consensus 172 m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~--~~~ 248 (319)
T KOG3832|consen 172 MNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWA--AFI 248 (319)
T ss_pred hhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHH--hcc
Confidence 555444332 211 11 1 12334444433 33566554 666666666655542211 111
Q ss_pred eeeeeeecC-CCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccC
Q 016636 205 WSASVRKGV-QPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI 257 (385)
Q Consensus 205 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m 257 (385)
......... +++... .+++...+-++-..++...|+|.+|...|.....+
T Consensus 249 ~g~~l~tmqaeedaa~---a~p~arc~cgfgkl~~~aly~~~a~cmapda~gag 299 (319)
T KOG3832|consen 249 LGISLATMQAEEDAAA---AHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAG 299 (319)
T ss_pred chhhhhhhhhcccccc---cCCccccccccccccchhhHHHHhhccCCCCCCCC
Confidence 111122111 112111 12233455566677899999999999999998887
No 52
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.69 E-value=7e-07 Score=89.22 Aligned_cols=239 Identities=16% Similarity=0.166 Sum_probs=132.6
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHH-HHHHHHHHHcchhcCC-cccccHHHHHHHh
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMVPG-KRFDRYHELGQHA 113 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~-~~s~~~l~~~~~~~~~-~~~~~y~~i~~~~ 113 (385)
.+||.|+++.+...+++++|.+ .+|.+++..|.. +++..++.+++. ......+.|.....|+ .. .-....+++
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG--G~Y~w~~~~ 79 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG--GIYSWMNKS 79 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--cHHHHHHHH
Confidence 4678999999999999999976 568888888864 455555555554 3466678887766775 34 778889999
Q ss_pred cCccccccchhHHHHHHhhhhh---h-------hhhhhhccchHHHHHHhhcCCCccccch-hhhHHHHHH--HHHhhCC
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVC---I-------VYMVTGGKSLHKVHELLCKEPCKEIKLS-YFIMIFASV--HFVLSHL 180 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~---~-------~y~i~~~~~l~~l~~~~~~~~~~~~~~~-~~~~i~~~i--~~pl~~~ 180 (385)
+||++| ++..+..+....... . ++.. .+.+.....+.. ..+.. ...++..+. ++-..-.
T Consensus 80 ~G~~~g-f~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~t~vn~ 151 (496)
T PRK15238 80 VGPKFA-FIGTFMWFASYIIWMVSTASKIWIPFSTFI-FGKDTTQTWHFL------GLNSTQVVGILAVIWMILVTFVAS 151 (496)
T ss_pred cCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcchhhhhhhh------cccchHHHHHHHHHHHHHHHHHHc
Confidence 999988 443322222111111 0 1111 111111100000 01111 111111111 2333334
Q ss_pred CCchhhHHHHHHHHHHHHH----HHhheeeeeeeecCC-CCc-c-ccc-cccccc-chhhhHHHHHhhHHhhccCceeeh
Q 016636 181 PNFNAIAGVSLAAAVMSLS----YSTIAWSASVRKGVQ-PDV-A-YGY-KAKTAA-GTVFNFFSALGDVAFAYAGHNVVL 251 (385)
Q Consensus 181 ~~l~~l~~~s~~~~~~~~~----~~~~~~~~~~~~~~~-~~~-~-~~~-~~~~~~-~~~~~~~~~~~~~~fsf~~~~~~~ 251 (385)
+..+..++++.++.+..+. .+++........+.. .+. . ..+ +...+. .+..++..++....|+|.|.+...
T Consensus 152 ~g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~ 231 (496)
T PRK15238 152 KGINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVG 231 (496)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHH
Confidence 5666666666554332211 111100111111111 000 0 001 000000 112357777888999999999999
Q ss_pred hccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhHHhHhh
Q 016636 252 EIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY 292 (385)
Q Consensus 252 ~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy 292 (385)
...+|+ |||+| +++|++..+...+.++|.+..+...
T Consensus 232 ~~a~E~----~~p~~-~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 232 GLVDKT----ENPEK-NFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred HHHHhc----cCCCc-cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 78877 7999999999999999998755443
No 53
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.62 E-value=3.3e-06 Score=83.95 Aligned_cols=246 Identities=15% Similarity=0.131 Sum_probs=120.4
Q ss_pred CCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHH-HHHHHHHHcchhcCCcccccHHHHHHHhcCc
Q 016636 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (385)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~-~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~ 116 (385)
+|.+.++.++..+.++++ +-.+|.+ ++.|.. .++.+++.+++.. -......|.....|+.+ ......++.+|+
T Consensus 1 ~~~~~~~l~~~~~~~v~~--~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~~G--G~y~~~~~a~G~ 74 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVS--LRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPEKG--GVFRWVGEAFGA 74 (474)
T ss_pred CcccHHHHHHHHHHHHHH--hhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CceeeHhhhcCh
Confidence 356666655555555444 4444655 567753 4455555555443 46777788776677755 788899999999
Q ss_pred cccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHH--HHhhCCCCchhhHHHHHHHH
Q 016636 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVH--FVLSHLPNFNAIAGVSLAAA 194 (385)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~--~pl~~~~~l~~l~~~s~~~~ 194 (385)
++| ++..+..++.......+-+...+..+....+.....+....+......+..++. +-+.-.+..+...+++....
T Consensus 75 ~~g-f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~~~ 153 (474)
T TIGR03813 75 RWG-FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKWGG 153 (474)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 988 666555554332111110011111111000000000000001111111112211 22223345555555544321
Q ss_pred H-HHHHHHhheeeeee---eecCCCCccccccccccc-chhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCC
Q 016636 195 V-MSLSYSTIAWSASV---RKGVQPDVAYGYKAKTAA-GTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPM 269 (385)
Q Consensus 195 ~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~ 269 (385)
. ..++..+++++..+ ..+..+..+...++..+. .++.....+. .++|+|.|.+......+|+ |||+| ++
T Consensus 154 ~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~----knP~r-~i 227 (474)
T TIGR03813 154 IVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDV----DNPDK-NY 227 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhc----cCccc-ch
Confidence 1 11110011011110 111111111111110111 1233333333 4578999999999999999 78877 79
Q ss_pred chhhhHHHHHHHHHHHhHHhHhhhccC
Q 016636 270 WRGVVVAYIVVALCYFPVALIGYWMFG 296 (385)
Q Consensus 270 ~~~~~~s~~~~~~~Y~~~g~~gy~~fG 296 (385)
+|++..+..++.++|.+..+......+
T Consensus 228 PrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 228 PIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999999999987666555444
No 54
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.18 E-value=0.00041 Score=68.30 Aligned_cols=300 Identities=13% Similarity=0.025 Sum_probs=154.3
Q ss_pred cCCCchhHHHHHHHHhhhhhhhhhHHHHHHhh--CchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 37 SRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQL--GWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~--G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
+|+.++++-...-....+...-+......... ++..+++..++..++...-..+...... +. ..++..+.|..|
T Consensus 11 ~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~-r~---Gl~~~v~sR~~F 86 (442)
T TIGR00800 11 ERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGA-KY---GLPFPVLSRASF 86 (442)
T ss_pred cCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHH-Hh---CCCcchhhhhhh
Confidence 44446555555555444444444444333222 2333444444443333333333333222 22 247889999999
Q ss_pred CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccc-----cchhhhHHHHHHHHHhhCCCCchhhHHH
Q 016636 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEI-----KLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~-----~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 189 (385)
|.+ |..+..+...+...+=........++.+..++....+..-..- ......+++.++.+++......+..++.
T Consensus 87 G~~-Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~~~~~~ 165 (442)
T TIGR00800 87 GIY-GSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYKIRHLF 165 (442)
T ss_pred hhh-HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 975 5578888888888887777888888888888887653210000 1122334445555665555444444444
Q ss_pred HHHHHHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCc-eeehhccccCCCCCCCCCCCC
Q 016636 190 SLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGH-NVVLEIQATIPSTPEKPSKGP 268 (385)
Q Consensus 190 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~-~~~~~i~~~m~~~~~~p~~~~ 268 (385)
...+....++.....+......+...+.....+....+.....+..+++..+=.+... .+.+...+.+ |++++..
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~----~~~~~~~ 241 (442)
T TIGR00800 166 EWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFG----KSKKTAI 241 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhc----CCccchH
Confidence 4444443222111111111111100110000000112334566666666654444444 7889999998 4444433
Q ss_pred CchhhhHHHHHHHHHHHhHHhHhhhc----cCCcchh--hHhhcCCCchHHHH-----HHHHHH-HHHHHHhhhccccch
Q 016636 269 MWRGVVVAYIVVALCYFPVALIGYWM----FGNKVED--NILLSLEKPTWLIV-----MANFFV-VVHVIGSYQIYAMPV 336 (385)
Q Consensus 269 ~~~~~~~s~~~~~~~Y~~~g~~gy~~----fG~~~~~--~il~~~~~~~~~~~-----~~~~~~-~~~~~~s~pl~~~p~ 336 (385)
+...+++....+....+|+.+... +|+...+ +++..+....+... ...++. ........-...++.
T Consensus 242 --~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N~ys~ 319 (442)
T TIGR00800 242 --WGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISANSYSA 319 (442)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence 557777777777777777777765 7765333 34444432211111 111222 222234777788888
Q ss_pred HHHHHHHHhhh
Q 016636 337 FDMIETLLVKK 347 (385)
Q Consensus 337 ~~~l~~~~~~~ 347 (385)
...+.+.+.+.
T Consensus 320 ~l~l~~l~~~~ 330 (442)
T TIGR00800 320 GLDIAALLPKY 330 (442)
T ss_pred HHHHHHhCcCc
Confidence 88888887443
No 55
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.10 E-value=9.9e-05 Score=71.87 Aligned_cols=252 Identities=11% Similarity=0.098 Sum_probs=134.4
Q ss_pred cCCCchh---HHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 37 SRNAKWW---YSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 37 ~~~~s~~---~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
+|.-|++ ...|.+.+..-|.- -++.+....+|-..-+-.+++.+........-|.|.....|... +.+-=+...
T Consensus 47 ~R~fs~~s~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~PtsG--gLy~waa~l 123 (550)
T KOG1289|consen 47 KREFSLFSIFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPTSG--GLYFWAAVL 123 (550)
T ss_pred hhhhhHHHHHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCCCC--cHHHHHHHh
Confidence 4444443 33444444333221 23444455455544444567777777778888888766666433 322223333
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhh-cCCCccccchhhhHHHHHHHHHhhCCC--CchhhHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC-KEPCKEIKLSYFIMIFASVHFVLSHLP--NFNAIAGVS 190 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~-~~~~~~~~~~~~~~i~~~i~~pl~~~~--~l~~l~~~s 190 (385)
-+||+++....++-....++............-+.++.... ..++..-++.....+..++++.++++. .-+-+++++
T Consensus 124 ap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~~I~ 203 (550)
T KOG1289|consen 124 APPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNSLPTRVLARIN 203 (550)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 47788876666665555554433332222222222222111 112222333444445544544444443 235566666
Q ss_pred HHHHHHHHHHHhheeeeee-e-ecC---CCCcccccc----cccccchhhhHHHHHhhHHhhccCceeehhccccCCCCC
Q 016636 191 LAAAVMSLSYSTIAWSASV-R-KGV---QPDVAYGYK----AKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTP 261 (385)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~-~-~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~ 261 (385)
.+++...+...++..+... . ..+ +++ ...+. ...+..+-+.+.-++-.-.+.+.|.....++.+|.
T Consensus 204 ~~~~~~~ll~~~i~~I~lla~~~~k~gFns~-~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~---- 278 (550)
T KOG1289|consen 204 SVSVYLNLLFLVILMITLLAASSKKTGFNSG-SFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEET---- 278 (550)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCCC-ceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHh----
Confidence 6666654432222222111 1 111 111 11111 11122244466667888899999999999999999
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhHHhHhhhccCC
Q 016636 262 EKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN 297 (385)
Q Consensus 262 ~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~ 297 (385)
+|++| +.+|.+..+..+..++=..+-+.-..+-+|
T Consensus 279 ~nAsk-~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~ 313 (550)
T KOG1289|consen 279 KNASK-AAPRGIISSIAIGFILGWIIIIGIAYTIPD 313 (550)
T ss_pred cchhh-hccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77776 688999999888888877777777777775
No 56
>PRK11375 allantoin permease; Provisional
Probab=97.81 E-value=0.009 Score=59.47 Aligned_cols=264 Identities=11% Similarity=0.039 Sum_probs=129.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccccccchhHHHH-HHhhhhhhhhhhhhccchHHH
Q 016636 71 GPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQL-IVEVGVCIVYMVTGGKSLHKV 149 (385)
Q Consensus 71 ~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~~~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~l 149 (385)
..+++..++..++...-+.+..+... +. ..++.-+.|..||.+ |-.+..+... +..++=-.......++.+..+
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~-~~---Gl~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~ 134 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGS-KY---GVPFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLIL 134 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc-cc---CCChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444433444443332 12 358999999999975 5345555552 344444444445666666666
Q ss_pred HHHhhcC----C----Cccccc--hhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHhheeeeeeee-cCCCCcc
Q 016636 150 HELLCKE----P----CKEIKL--SYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRK-GVQPDVA 218 (385)
Q Consensus 150 ~~~~~~~----~----~~~~~~--~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 218 (385)
+....+. + ....+. ....+++.++..+..+ ...+.++++...+.....+......++.+.+ +..+-.+
T Consensus 135 l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~ 213 (484)
T PRK11375 135 IGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFD 213 (484)
T ss_pred HHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhc
Confidence 6554321 0 011111 1122244445556654 4566666666655554433222212222211 1111000
Q ss_pred cccc-cccccchhhhHHHHHhhHHhhcc-CceeehhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhHHhHh----h
Q 016636 219 YGYK-AKTAAGTVFNFFSALGDVAFAYA-GHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIG----Y 292 (385)
Q Consensus 219 ~~~~-~~~~~~~~~~~~~~~~~~~fsf~-~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~g----y 292 (385)
.... ..........+..++...+=++. ...+.|...+.. |++++.. +...++..+...+...+|+.. .
T Consensus 214 ~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~----k~~~~~~--~~~~~g~~i~~~~~~~~g~~~~~~a~ 287 (484)
T PRK11375 214 YIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNA----HSFRAQA--LGQTLGLVVAYILFAVASVCIIAGAS 287 (484)
T ss_pred cCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhccc----CChhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 00011123445555544444454 345888888887 5554422 455556666665554444433 3
Q ss_pred hccCCcchh--hHhhcCCCchHHHHHHHHHHHHHHHHh-hhccccchHHHHHHHHhhh
Q 016636 293 WMFGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGS-YQIYAMPVFDMIETLLVKK 347 (385)
Q Consensus 293 ~~fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s-~pl~~~p~~~~l~~~~~~~ 347 (385)
..||+...+ +++.++.. .+...++-+...+..+.+ ..-.+++....+.+++.++
T Consensus 288 ~~~g~~~~dp~~i~~~~~~-~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~ 344 (484)
T PRK11375 288 IHYGADTWNVLDIVQRWDS-LFASFFAVLVILMTTISTNATGNIIPAGYQIAALAPTK 344 (484)
T ss_pred HHhCCCcCCHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHhCcCc
Confidence 456654333 44444432 334444555566666665 4569999999998888654
No 57
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.68 E-value=0.0022 Score=58.87 Aligned_cols=137 Identities=18% Similarity=0.189 Sum_probs=95.7
Q ss_pred HHHHHHhhhhhhhhhHH---HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccccccc
Q 016636 46 AFHNVTAMVGAGVLSLP---YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYI 122 (385)
Q Consensus 46 ~~~l~~~~iG~GiL~lP---~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~~~~~ 122 (385)
.+-.+.+++|+|-=+== .-|..-|+. |+.-.++++++-..++....+...+.+. .+|.|+.+.++||+++ .+
T Consensus 9 ~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a---~~y~~~~~~v~~~~~~-ki 83 (349)
T COG3949 9 AFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNA---TSYREILKYVSGPKFA-KI 83 (349)
T ss_pred HHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHhhHHHH-HH
Confidence 45566789999865322 235566764 5666677777777788888877654333 3899999999999999 69
Q ss_pred hhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHH
Q 016636 123 VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVM 196 (385)
Q Consensus 123 ~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~ 196 (385)
.|+.+.++.++.++..+...+..+++..+. ....-.++..+++..+.++++.+++-.+..+-+..
T Consensus 84 ~d~~iif~lf~~~vVM~AGags~~~e~~~l---------P~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~ 148 (349)
T COG3949 84 IDIIIIFFLFSTAVVMLAGAGSLLEEMFGL---------PYWIGALIIILLVLILLFLGRVEGIITVNGIITPF 148 (349)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhCc---------cHHHHHHHHHHHHHHHHHHhcccceeeeheeHHHH
Confidence 999999999999998888888777776544 12223245555555556666677776666555553
No 58
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.38 E-value=0.0037 Score=58.49 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=103.5
Q ss_pred CCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCcc
Q 016636 38 RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEK 117 (385)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~ 117 (385)
-..+.+...-+=..++-|+|-+.=|..-.+-||+++++..++-+++..--..+..-....+.+- +|.+|++++..||+
T Consensus 50 vP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G--~Si~~i~~~~lG~~ 127 (376)
T PF02554_consen 50 VPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKG--KSIGEIAGKYLGKR 127 (376)
T ss_pred CCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCC--ccHHHHHHHHHHHH
Confidence 3455667777888899999999999988999999998888776666554444444333322232 39999999999986
Q ss_pred ccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHH
Q 016636 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMS 197 (385)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~ 197 (385)
. |.+..+..++.+.....++....++.+...-.. ....++.+...+++-+...|+=.++...+.++++..
T Consensus 128 ~-~~lf~~f~~~~lilV~avF~~v~a~~~~~~p~~---------~~~~~~~I~~Ai~~G~~~y~~~~~~~~~t~i~vvll 197 (376)
T PF02554_consen 128 A-KKLFLIFIFFLLILVIAVFADVVANTFVNSPWA---------ATSSLLFIPIAILFGLLVYKRGGNLGPATIIGVVLL 197 (376)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHhccChhH---------HHHHHHHHHHHHHHhHhheecCCchHhhHHHHHHHH
Confidence 4 478888888888888887777777665443221 223455555556665555555555778888887754
Q ss_pred HH
Q 016636 198 LS 199 (385)
Q Consensus 198 ~~ 199 (385)
+.
T Consensus 198 ~~ 199 (376)
T PF02554_consen 198 LL 199 (376)
T ss_pred HH
Confidence 43
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=97.22 E-value=0.084 Score=52.51 Aligned_cols=151 Identities=12% Similarity=0.155 Sum_probs=94.4
Q ss_pred cccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHH-HHHHHHHHHHH----HcchhcCCcccccHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSW-IITLYTLWQMV----EMHEMVPGKRFDRYHE 108 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~-~l~~~s~~~l~----~~~~~~~~~~~~~y~~ 108 (385)
...|+.+++.....+..+.+|.+. +..|....+.|+.. ......+ ...+.....+. +..+ +.+ ..|.+|
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~T~~e 111 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGW--VLLAMIQVPTGYFVLGVLGKKFAIISR-KYN--AITIND 111 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC--CccHHH
Confidence 457889999999999999999866 57887776777631 1111111 11111111221 2122 222 459999
Q ss_pred HHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHH
Q 016636 109 LGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (385)
Q Consensus 109 i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 188 (385)
+.++-||++..+++..+...+..++...+.+...+..++.+++ ++....+++..+++.-....-.++...+
T Consensus 112 ~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g---------i~~~~~iii~~~iv~iYt~~GG~~av~~ 182 (471)
T TIGR02119 112 VLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG---------LSYLTALFIFSSSVLIYTTFGGFRAVAL 182 (471)
T ss_pred HHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999765556777776666666656556666655555532 3334445555666677777788899999
Q ss_pred HHHHHHHHHHH
Q 016636 189 VSLAAAVMSLS 199 (385)
Q Consensus 189 ~s~~~~~~~~~ 199 (385)
+..+..+..++
T Consensus 183 td~iQ~~v~~~ 193 (471)
T TIGR02119 183 TDAIQGIVMFT 193 (471)
T ss_pred HHHHHHHHHHH
Confidence 88888775444
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=97.22 E-value=0.034 Score=54.18 Aligned_cols=150 Identities=15% Similarity=0.197 Sum_probs=94.5
Q ss_pred cCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcC
Q 016636 37 SRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFG 115 (385)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G 115 (385)
.|+.+++...+.+..+.+|++. ++.|....+.|+. ++...+...........+..+..+ +.+ ..|.+|+.+.-||
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~T~~e~l~~Ryg 77 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFI-NNG--AYTMPEYLEKRFG 77 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH-HcC--CCchhHHHHHHhC
Confidence 4678888888899888888755 5888777777853 222222222222333444444332 222 4699999999999
Q ss_pred ccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 016636 116 EKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (385)
Q Consensus 116 ~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 195 (385)
++..+.+..+...+..+......+...+..++.+++ ++....+++..+++.-....-.++...+...+..+
T Consensus 78 ~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g---------i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~ 148 (407)
T TIGR00813 78 KRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG---------LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAV 148 (407)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 765655555655666666666667777766666542 23334444555555666677788888888888776
Q ss_pred HHHH
Q 016636 196 MSLS 199 (385)
Q Consensus 196 ~~~~ 199 (385)
..+.
T Consensus 149 i~~~ 152 (407)
T TIGR00813 149 IMIL 152 (407)
T ss_pred HHHH
Confidence 5443
No 61
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=97.22 E-value=0.05 Score=54.33 Aligned_cols=152 Identities=12% Similarity=0.143 Sum_probs=90.4
Q ss_pred cccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHHHHH----HHHHHHcchhcCCcccccHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYT----LWQMVEMHEMVPGKRFDRYHEL 109 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~s----~~~l~~~~~~~~~~~~~~y~~i 109 (385)
...|+.+++...+.+..+.+|++. +..|....+.|+.. .............. ...+.+..+ +.+ ..|.+|+
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~--~~T~~e~ 113 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGW-VLLAMIQVPTVWLSLGILGKKFAILAR-KYN--AVTLNDM 113 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC--CccHHHH
Confidence 457788889999999888888754 58886666667631 11111101111111 222222222 222 4699999
Q ss_pred HHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHH
Q 016636 110 GQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGV 189 (385)
Q Consensus 110 ~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~ 189 (385)
.++-||++..+.+..+...+..+......+...+..++.+++ ++....+++..+++.-.+..-.++...+.
T Consensus 114 l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g---------i~~~~~iii~~~iv~iYt~~GGl~av~~T 184 (483)
T PRK09442 114 LRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG---------ISYETGLLIFGITVALYTAFGGFRAVVLT 184 (483)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 999999765445555555554444555555566666555532 33344455556666777788888888888
Q ss_pred HHHHHHHHHH
Q 016636 190 SLAAAVMSLS 199 (385)
Q Consensus 190 s~~~~~~~~~ 199 (385)
..+..+..+.
T Consensus 185 D~iQ~~i~~~ 194 (483)
T PRK09442 185 DALQGIVMLV 194 (483)
T ss_pred HHHHHHHHHH
Confidence 8888775444
No 62
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.21 E-value=0.062 Score=51.92 Aligned_cols=269 Identities=15% Similarity=0.097 Sum_probs=145.2
Q ss_pred hHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccccccc
Q 016636 43 WYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYI 122 (385)
Q Consensus 43 ~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~~~~~ 122 (385)
....+++.+-..|+.... .++..+++..++..++...-..+...... +. ..++.-+.|..||++ |..+
T Consensus 8 ~~~~~~v~~~~~G~~l~~-------L~~~~ai~aiilG~~i~~~~~~l~~~~G~-~~---Gl~~~v~sR~~FG~~-Gs~~ 75 (386)
T TIGR02358 8 FGAAISIAEIQTGALLAP-------LGLTRGLLAILLGHLVGVLLLSAAGVIGA-DT---GLSAMGSLKLSLGSK-GSVL 75 (386)
T ss_pred HHHHhhHHHHHHHHHHHh-------ccHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc---CcCHHHHHHHHHccc-hhhH
Confidence 445555555555554321 33333444444444443333333333322 22 347999999999975 6567
Q ss_pred hhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHh
Q 016636 123 VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYST 202 (385)
Q Consensus 123 ~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~ 202 (385)
..+...+...|=-.......++.++.+++...+.+ +...+.++..++..+.+. ...+.++++..++.....+..+
T Consensus 76 ~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~----~~~~~~~i~~~l~~~~~~-~G~~~i~~~~~~~~~~~~i~~~ 150 (386)
T TIGR02358 76 PSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEE----SPMLWILIVGILVTLWLL-SGPLAFVWLNNWSVWLLLIATL 150 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777666666778888888877643221 122334444444444443 3556677777666665444332
Q ss_pred heeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhc-cCceeehhccccCCCCCCCCCCCCCchhhhHHHHHHH
Q 016636 203 IAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAY-AGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVA 281 (385)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf-~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~ 281 (385)
...+....+.... ...+. +.+ ..+..+++...-.+ ......+...+.. |+|+ +......++..+..
T Consensus 151 ~~~~~~~~~~~~~---~~~~~---~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~----k~~~--~~~~~~~~G~~i~~ 217 (386)
T TIGR02358 151 WLLVVVFSKADLS---ELWNR---AGD-MSFAVAVELVIAMPLSWLPLIADYTRFA----RNPR--HVFLGTVLGYFIGS 217 (386)
T ss_pred HHHHHHHhccchh---hhcCC---CCC-ccHHHHHHHHHHHHHHHHHHccchhhhc----CCCc--ceehHHHHHHHHHH
Confidence 2222222211111 11111 111 22333333322111 1123467777776 4443 34467777888888
Q ss_pred HHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHh
Q 016636 282 LCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (385)
Q Consensus 282 ~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~ 345 (385)
.+-.++|.....+.++....+++.... .....-+...+....+-....++....+.+.++
T Consensus 218 ~~~~~~G~~~~~a~~~~d~~~~~~~~g----~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~~ 277 (386)
T TIGR02358 218 CWMYFLGLAVTLATGQTDIISILAGAG----LGIPALLIILLSTVTTTFMDIYSAAISTGNLLP 277 (386)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHhcc----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888777777643333333331 112444555666677778889998888888874
No 63
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.12 E-value=0.22 Score=48.80 Aligned_cols=240 Identities=12% Similarity=0.077 Sum_probs=116.9
Q ss_pred cCCcc-cccHHHHHHHhcCccccc--cchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcC----C----Cccccchhh
Q 016636 98 VPGKR-FDRYHELGQHAFGEKLGL--YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE----P----CKEIKLSYF 166 (385)
Q Consensus 98 ~~~~~-~~~y~~i~~~~~G~~~~~--~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~----~----~~~~~~~~~ 166 (385)
+++.+ ..+|+...+..||-...+ .+.+..+-..-+|.-. -..+..++.++....+. + ....+...+
T Consensus 96 ~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~ 172 (497)
T COG1953 96 HAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLEL 172 (497)
T ss_pred CcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHH
Confidence 44443 578999999999853221 2344444444444322 23344444455444422 0 011122222
Q ss_pred hH--HHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHhheeeeeeeecCC---CCcccccccccccchhhhHHHHHhhHH
Q 016636 167 IM--IFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQ---PDVAYGYKAKTAAGTVFNFFSALGDVA 241 (385)
Q Consensus 167 ~~--i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (385)
+. ++-++. .+++.+..+.+|++-..+.....+.+.-.+++...+... ....+. .....+..++.+..+.. ..
T Consensus 173 i~F~ifW~l~-~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~-~~~~~~~~~w~~~~~~~-~~ 249 (497)
T COG1953 173 ICFFIFWVLQ-LLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPA-GTVSGSNSSWAFLAGIA-AW 249 (497)
T ss_pred HHHHHHHHHH-HHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCC-CCCCcchhHHHHHHHHH-HH
Confidence 22 122222 334456778888777766665444443333443333211 111110 01112223333333332 23
Q ss_pred hhccC--ceeehhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhH----HhHhhhccCCcch--hhHhhcCCCchHH
Q 016636 242 FAYAG--HNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPV----ALIGYWMFGNKVE--DNILLSLEKPTWL 313 (385)
Q Consensus 242 fsf~~--~~~~~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~Y~~~----g~~gy~~fG~~~~--~~il~~~~~~~~~ 313 (385)
..+.. .-|+|...+.- |+|+... +.-.++..+.+.+..++ +..++..||+... .+++.++.++...
T Consensus 250 v~~~Atl~lN~~DFsRfa----~s~~~~~--~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~ 323 (497)
T COG1953 250 VGFWATLALNIPDFTRFA----KSQKAQI--WGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYA 323 (497)
T ss_pred HHHHHHHhcCCchhhccc----CChhhhh--hccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHH
Confidence 33322 26888888887 4444433 33345555555555544 4567788999855 4888888754443
Q ss_pred HHHHHHHHH-HHHHHhhhccccchHHHHHHHHhhhcC
Q 016636 314 IVMANFFVV-VHVIGSYQIYAMPVFDMIETLLVKKLN 349 (385)
Q Consensus 314 ~~~~~~~~~-~~~~~s~pl~~~p~~~~l~~~~~~~~~ 349 (385)
..++.+.++ -++-+...-...+...=+.+.+++.-+
T Consensus 324 ~fl~~l~~~iati~~Ni~aN~vsp~~D~s~l~Pk~in 360 (497)
T COG1953 324 AFLAGLTFAVATISTNIAANIVSPGYDLSALFPKYIN 360 (497)
T ss_pred HHHHHHHHHHHHHhhhHHhccCChHHHHHHhcccccc
Confidence 313333333 333445555666666666677665544
No 64
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.12 E-value=0.13 Score=51.44 Aligned_cols=154 Identities=13% Similarity=0.096 Sum_probs=96.7
Q ss_pred cccCCCchhHHHHHHHHhhhh-hhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHH-cchhcCCcccccHHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVG-AGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVE-MHEMVPGKRFDRYHELGQH 112 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG-~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~-~~~~~~~~~~~~y~~i~~~ 112 (385)
...|+.+.+-..+....+.++ .-.+.+|....+.|+....+... ..+........+.+ ..+...+++..|.+|+.++
T Consensus 35 ~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~-~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~ 113 (493)
T COG0591 35 LGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIG-LLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEA 113 (493)
T ss_pred ccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHH
Confidence 456677777777777777777 66789999988899864333222 11233333333322 2221112235699999999
Q ss_pred hcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHH
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (385)
=||++..|.+..+...+..+.-+...++..++.++.... . +...-..+...++......-.++...+...+
T Consensus 114 Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i--------~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i 184 (493)
T COG0591 114 RFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-I--------SYVTGILIGALIVALYTFLGGLRAVVWTDFI 184 (493)
T ss_pred HcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-C--------CHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 999555668888888888888888888888877755543 1 2233333445555555666677777777776
Q ss_pred HHHHHH
Q 016636 193 AAVMSL 198 (385)
Q Consensus 193 ~~~~~~ 198 (385)
......
T Consensus 185 qg~im~ 190 (493)
T COG0591 185 QGLIML 190 (493)
T ss_pred HHHHHH
Confidence 666444
No 65
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.83 E-value=0.053 Score=54.43 Aligned_cols=269 Identities=14% Similarity=0.148 Sum_probs=131.7
Q ss_pred hhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcch--hcCCcccccHHHHHHHhcCccccccchhHHHHHHhhhhhh
Q 016636 59 LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE--MVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCI 136 (385)
Q Consensus 59 L~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~--~~~~~~~~~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~ 136 (385)
|-+++..-+.|+...+..+++...+..+|..=+..... ...+-+ -|.-+. +.+|+..| --+....++.+...|.
T Consensus 88 LR~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGG--aYymIS-RsLGpEfG-GSIGllFf~anV~~~a 163 (945)
T KOG1288|consen 88 LRFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGG--AYYMIS-RSLGPEFG-GSIGLLFFVANVFNCA 163 (945)
T ss_pred HHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCc--eEEEEE-cccCcccC-CeeeehhhHHHHhcch
Confidence 45667777888877777776666555555443333221 122322 344444 35677766 4555666666666776
Q ss_pred hhhhhhccchHHHHHHhhcC-----------CCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHHHHHHHHhhee
Q 016636 137 VYMVTGGKSLHKVHELLCKE-----------PCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAW 205 (385)
Q Consensus 137 ~y~i~~~~~l~~l~~~~~~~-----------~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~~~ 205 (385)
.++..+.+ .++..+... +..+|... +..++..+++.+|++- -.-++.+|.+-++........+.
T Consensus 164 m~isG~vE---~il~nfG~~a~g~sg~~~lP~g~ww~fl-y~t~vl~l~~~vc~lG-salfAkas~i~f~~is~s~~si~ 238 (945)
T KOG1288|consen 164 MNISGFVE---PILDNFGKEAQGASGSQFLPDGYWWRFL-YTTLVLALCLIVCLLG-SALFAKASNILFVVISVSLFSIP 238 (945)
T ss_pred hhhhhhhH---HHHHhcCccccCCcccccCCCCcchhhH-HHHHHHHHHHHHHHhh-HHHHHhhhhhhhhHHHHHHhhhh
Confidence 66655544 444444311 11122222 2222333333344442 22234444443332221122222
Q ss_pred eeeeeecCCCCc-----cc---------cccccc----------------ccchhhhHHHHHhhHHhhccCceeehhccc
Q 016636 206 SASVRKGVQPDV-----AY---------GYKAKT----------------AAGTVFNFFSALGDVAFAYAGHNVVLEIQA 255 (385)
Q Consensus 206 ~~~~~~~~~~~~-----~~---------~~~~~~----------------~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~ 255 (385)
+..++.+..++. ++ ++..+. ...+..++-..|++++-+-.|...=-....
T Consensus 239 iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSg 318 (945)
T KOG1288|consen 239 ISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSG 318 (945)
T ss_pred heeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCc
Confidence 223332221111 00 010000 011223555667777766666655555666
Q ss_pred cCCCCCCCCCCCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcc-hh--hHhhcCCCchHHHHHHHHHHHHHHHHhhhcc
Q 016636 256 TIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-ED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIY 332 (385)
Q Consensus 256 ~m~~~~~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~-~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~ 332 (385)
|+ |+|+| .++|....+....+++|++..+.--.+-.... ++ .+....+-..|.. .+...-..+.+--..
T Consensus 319 EL----k~PSk-SIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~isl~p~fi---~iGi~sttlfss~s~ 390 (945)
T KOG1288|consen 319 EL----KAPSK-SIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHISLHPPFI---LIGILSTTLFSSMSG 390 (945)
T ss_pred cc----cCccc-cCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeeccccchHH---HHHHHHHHHHHHHHH
Confidence 77 88998 78999999999999999998776544432221 11 2222222222222 222222333444455
Q ss_pred ccchHHHHHHHH
Q 016636 333 AMPVFDMIETLL 344 (385)
Q Consensus 333 ~~p~~~~l~~~~ 344 (385)
+..+.+.+|.+-
T Consensus 391 liGasrvL~ala 402 (945)
T KOG1288|consen 391 LIGASRVLEALA 402 (945)
T ss_pred HhhHHHHHHHHh
Confidence 666677777663
No 66
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.19 Score=48.84 Aligned_cols=219 Identities=15% Similarity=0.142 Sum_probs=128.3
Q ss_pred cHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCC--CC
Q 016636 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL--PN 182 (385)
Q Consensus 105 ~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~--~~ 182 (385)
+=..+.+..||.+ |.++..+.+.+.+.|-...-.+..++..... ...+...++++..+++...+.. |-
T Consensus 82 pqmi~sR~~fG~~-Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~---------~~~~~~~~ili~g~l~~l~~ifG~r~ 151 (442)
T COG1457 82 PQMILSRYPFGVK-GSILPSLLNGITLIGWFGVNVILSGIAIGSG---------TGLPVWAGILIIGVLMTLVTIFGYRA 151 (442)
T ss_pred Chheeecccccch-hHHHHHHHHHHHHhhHHHHHHHHhccccccC---------CCCcHHHHHHHHHHHHHHHHHHhHHH
Confidence 4456788889975 5578888888888887777777776651111 1233445555555554444333 34
Q ss_pred chhhHHHHHHHHHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCc-eeehhccccCCCCC
Q 016636 183 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGH-NVVLEIQATIPSTP 261 (385)
Q Consensus 183 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~-~~~~~i~~~m~~~~ 261 (385)
++.+.+.+..-......+.+..+.... + ..+... ...+.++.++..+++...-.+... +-.....+.+++
T Consensus 152 l~~l~~~a~~~~~~lf~~l~~~~~~~~--~-~~~~~~----~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~-- 222 (442)
T COG1457 152 LHKLERIAVPLLLLLFLYLLALLFRSK--G-GLDALW----VKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAPS-- 222 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--c-ccceee----ccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcCC--
Confidence 555555555444433332222111111 1 111111 112446666666666665555555 666777777732
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcc-hhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHH
Q 016636 262 EKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKV-EDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMI 340 (385)
Q Consensus 262 ~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~-~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l 340 (385)
++| ++.-.....+......+-.+.|.....+-|+.. ..++...+.. +...+.+...++.+.+--..+++..-.+
T Consensus 223 ~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~---~g~~~~lil~l~~~ttN~~nlYsa~ls~ 297 (442)
T COG1457 223 PTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG---FGLPAILILVLGTVTTNANNLYSAGLSF 297 (442)
T ss_pred Cch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc---HHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 222 132344446666777777788888888888776 4455455542 4566777778888888888999988888
Q ss_pred HHHHhhh
Q 016636 341 ETLLVKK 347 (385)
Q Consensus 341 ~~~~~~~ 347 (385)
.+.+.+-
T Consensus 298 ~~i~~~l 304 (442)
T COG1457 298 ANIIPKL 304 (442)
T ss_pred HHhhhhh
Confidence 8887653
No 67
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=96.66 E-value=0.035 Score=53.81 Aligned_cols=147 Identities=15% Similarity=0.118 Sum_probs=78.1
Q ss_pred CCCchhHHHHHHHHhhhhhh-hhhHHHHHHhhCchHHHHHHHHHHHHHHHHHH----HHHHcchhcCCcccccH-----H
Q 016636 38 RNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLW----QMVEMHEMVPGKRFDRY-----H 107 (385)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~l~~~s~~----~l~~~~~~~~~~~~~~y-----~ 107 (385)
++.|.+|+.+..+.+.+|+| |+.+|-+.+..|- .++..+-+.+++...+.+ +..+..+ ++++ .+| .
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGp-GAvFWMWI~allGm~~~~~e~~L~~~yr~-~~~~--g~~~GGP~y 120 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGP-GAVFWMWVTAFIGMATKFVESTLAQKYRE-RDAD--GVFRGGPMY 120 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHeee-eCCC--CCEecChHH
Confidence 45899999999999999998 9999999877773 354444444444333322 2222222 2222 236 7
Q ss_pred HHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhH
Q 016636 108 ELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIA 187 (385)
Q Consensus 108 ~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 187 (385)
++-+...||+.+ .+..++ .+..++... ......+.+...... ..+ .+...+..+++.-+.....++.+.
T Consensus 121 yi~~gl~~k~lg-~lfa~~-~i~~f~~~~---~~Q~nsi~~~~~~~~-----~~~-~~v~~i~l~~l~~~vi~GGik~Ia 189 (425)
T TIGR00835 121 YIKKGLGMRWLA-VLFAVF-LIASFGIGN---MVQANAIASALSNAF-----NVP-KLVTGIVLTVLTALIIFGGLKRIA 189 (425)
T ss_pred HHHHHhCccHHH-HHHHHH-HHHHHhhhH---HHHHHHHHHHHHHHc-----CCc-HHHHHHHHHHHHHHHHhcCchHHH
Confidence 777776665544 333333 222222211 111122222222111 111 223333344444445556788888
Q ss_pred HHHHHHHHHHHH
Q 016636 188 GVSLAAAVMSLS 199 (385)
Q Consensus 188 ~~s~~~~~~~~~ 199 (385)
.++...+.++.+
T Consensus 190 ~v~~~lvP~m~~ 201 (425)
T TIGR00835 190 KISSVVVPFMAL 201 (425)
T ss_pred HHHHHHHHHHHH
Confidence 888877775443
No 68
>PRK12488 acetate permease; Provisional
Probab=96.62 E-value=0.61 Score=47.33 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=92.6
Q ss_pred cccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHHH-HHHHHHHHcchhcCCcccccHHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQH 112 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~-~s~~~l~~~~~~~~~~~~~~y~~i~~~ 112 (385)
-..|+.+++...+.+..+.++++. +..|......|+. ++... ....+.+ ....++.+-.+ +.+..|.+|+.++
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~-~g~~~g~~~~~~~~a~~lr---~~g~~T~~d~l~~ 138 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYA-LGVLAGWPIILFLIAERLR---NLGKYTFADVVSY 138 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHH-HHHHHHHHHHHHHHHHHHH---HCCCcchHHHHHH
Confidence 356788999999999999888866 6899877778874 22221 1111221 11223333222 1224699999999
Q ss_pred hcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHH
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (385)
=||.+..|.+..+...+..+.-....++..+..++.+++ ++...-+++..+++.-.+..--++...+...+
T Consensus 139 Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g---------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T PRK12488 139 RLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG---------ISYLYAVVIVGALMVLYVTFGGMLATTWVQII 209 (549)
T ss_pred HcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 898554556666665555555555555555555544431 33344455556666667777788888888888
Q ss_pred HHHHHHH
Q 016636 193 AAVMSLS 199 (385)
Q Consensus 193 ~~~~~~~ 199 (385)
..+..+.
T Consensus 210 Q~~im~~ 216 (549)
T PRK12488 210 KAVLLLS 216 (549)
T ss_pred HHHHHHH
Confidence 8765443
No 69
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.56 E-value=0.074 Score=51.00 Aligned_cols=268 Identities=16% Similarity=0.156 Sum_probs=120.9
Q ss_pred HHHHHhhhhhhhhhHHHH-HHhhC--chHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccccccch
Q 016636 47 FHNVTAMVGAGVLSLPYA-MAQLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIV 123 (385)
Q Consensus 47 ~~l~~~~iG~GiL~lP~a-f~~~G--~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~~~~~~ 123 (385)
+.+....+|+|.|-.|-. -.++| |..+.+.+++.++..-....+ +-.+.+. +|+++.++ +||+++ .+.
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~~~gG---~~~~l~~~-~g~~f~-~lf 72 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALALVGG---GYDSLSAR-IGKVFG-ILF 72 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eeeecCC---CHHHHHHH-hChHHH-HHH
Confidence 456778899999998854 33444 455566666655554433333 2112221 68888876 588877 344
Q ss_pred hHHHHHHhhhh--------hhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHHH
Q 016636 124 VPQQLIVEVGV--------CIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAV 195 (385)
Q Consensus 124 ~~~~~~~~~g~--------~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~ 195 (385)
.+.+.+ ..|- .++|-+... + +.+............+++..+.+-+++ |.-|-..++..+-..
T Consensus 73 ~~~~~l-~iGP~~aiPRtaa~s~e~~i~-------p-~~~~~~~~~~l~i~siiff~i~~~l~~-~~~k~~~~iGk~LTP 142 (378)
T TIGR00796 73 TVILYL-TIGPLFAIPRTATVSFEMGIA-------P-LLHSPTSLLALFIFSLIFFAVVLLLSL-NPSKLIDRVGKFLTP 142 (378)
T ss_pred HHHHHH-HHHhchhhhHHHHHHHHHHHH-------h-ccCcccchHHHHHHHHHHHHHHHHHHc-CcccHHHHhHHHHHH
Confidence 333332 2222 222322211 1 111101001111122222222233333 333434444444444
Q ss_pred HHHHHHhheeeeeeeecCCC--CcccccccccccchhhhHHHHHhhHHhhcc-------Cceeehhccc-cCCCCCCCCC
Q 016636 196 MSLSYSTIAWSASVRKGVQP--DVAYGYKAKTAAGTVFNFFSALGDVAFAYA-------GHNVVLEIQA-TIPSTPEKPS 265 (385)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~-------~~~~~~~i~~-~m~~~~~~p~ 265 (385)
+.++.+.++++.++.+...+ .....+.+ + ..+.+++-.--+.++ +...+-.+.. |+ +||+
T Consensus 143 ~lLi~l~~lii~g~~~p~g~~~~~~~~~~~----~--~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~----~~~~ 212 (378)
T TIGR00796 143 ALLVTLLALIIKALLWPAGPILAASGAYAS----Q--QAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGV----TKPK 212 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCccccccc----c--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCHH
Confidence 43333333333333321111 11011110 0 112233333333333 5556666666 77 5555
Q ss_pred CCCCchhhhH---HHHHHHHHHHhHHhHhhhccC---Cc-chhhHhhcCCC---chHHHHHHHHHHHHHHHHhhhccccc
Q 016636 266 KGPMWRGVVV---AYIVVALCYFPVALIGYWMFG---NK-VEDNILLSLEK---PTWLIVMANFFVVVHVIGSYQIYAMP 335 (385)
Q Consensus 266 ~~~~~~~~~~---s~~~~~~~Y~~~g~~gy~~fG---~~-~~~~il~~~~~---~~~~~~~~~~~~~~~~~~s~pl~~~p 335 (385)
| ..++.... +......+|.-.+..|...-+ +. ..+.++.+..+ +++...+..+.+.+.++++---....
T Consensus 213 ~-~~~~~i~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~ 291 (378)
T TIGR00796 213 K-ITKYTIKAGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTA 291 (378)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 33344443 445556666666666665432 22 12344333321 23345556666666666665555555
Q ss_pred hHHHHHHHH
Q 016636 336 VFDMIETLL 344 (385)
Q Consensus 336 ~~~~l~~~~ 344 (385)
+.+.+.++.
T Consensus 292 ~a~~f~~~~ 300 (378)
T TIGR00796 292 CSEYFHKLV 300 (378)
T ss_pred HHHHHHHhc
Confidence 666666664
No 70
>PRK11017 codB cytosine permease; Provisional
Probab=96.43 E-value=0.39 Score=46.72 Aligned_cols=217 Identities=13% Similarity=0.064 Sum_probs=97.9
Q ss_pred cccHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCC
Q 016636 103 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 182 (385)
Q Consensus 103 ~~~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~ 182 (385)
..++.-+.|..||.+ |..+..+...+...+=........++.++.+.+ .+...+.+++.++..+.+.. .
T Consensus 70 G~~~~v~sR~~FG~~-Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~---------~~~~~~~~i~~~l~~~~~~~-G 138 (404)
T PRK11017 70 GLSTHLLARFSFGEK-GSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG---------LDINLLIVLSGLLMTVTAYF-G 138 (404)
T ss_pred CcCHHHHHHHHhchh-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHHHHHH-H
Confidence 358999999999975 545555555554444333333333333333221 11222444455554444443 2
Q ss_pred chhhHHHHHHHHHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccC-ceeehhccccCCCCC
Q 016636 183 FNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAG-HNVVLEIQATIPSTP 261 (385)
Q Consensus 183 l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~-~~~~~~i~~~m~~~~ 261 (385)
.+.+++++..+.....+..+........+....+.....+ +.+...+..++...+=.+.. -.+.+...+..
T Consensus 139 ~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~---- 210 (404)
T PRK11017 139 ISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIV----PAEPLDFSAALTLVVGSFISGGTLTADFVRFG---- 210 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCC----CCCcccHHHHHHHHHHHHHHhHhcCCChHhhc----
Confidence 3445555554444333222211111111110001000110 11223455555544444433 36788888876
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 016636 262 EKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIE 341 (385)
Q Consensus 262 ~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~ 341 (385)
|++++ .......+..+...+..++|.......|+....+..... + .....-+...+...++-...++...-.+.
T Consensus 211 k~~~~--~~~~~~lg~~i~~~~~~~~G~~~a~~~~~~d~~~~~~~~---~-~~~~~l~~~~l~~~t~n~~~~ys~~l~~~ 284 (404)
T PRK11017 211 RSAKI--AVLATMVAFFLGNSLMFIFGAAGAAVYGQADISDVMIAQ---G-LLIPAIVMLGLNIWTTNDNALYASGLGFC 284 (404)
T ss_pred cCccc--eeehhHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHh---c-hHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 43332 224445556566666666776666667653222222211 1 11223334444444444555555544555
Q ss_pred HHH
Q 016636 342 TLL 344 (385)
Q Consensus 342 ~~~ 344 (385)
+..
T Consensus 285 ~l~ 287 (404)
T PRK11017 285 NIT 287 (404)
T ss_pred HHh
Confidence 543
No 71
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.012 Score=58.02 Aligned_cols=229 Identities=19% Similarity=0.226 Sum_probs=129.1
Q ss_pred CCchhHHHHH--HHHhhhhhh-hhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcch---hcCCcccccHHHHHHH
Q 016636 39 NAKWWYSAFH--NVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE---MVPGKRFDRYHELGQH 112 (385)
Q Consensus 39 ~~s~~~~~~~--l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~---~~~~~~~~~y~~i~~~ 112 (385)
+-+|++.++. ++| +.|.= .|-+++...|+|+..|++++..+..++..|..=..-..+ ...+ . .| -+..+
T Consensus 29 ~fg~~~gv~~~cmln-i~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G-g--~y-flis~ 103 (643)
T KOG2083|consen 29 LFGWWDGVFVRCMLN-IFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG-G--VY-FLISR 103 (643)
T ss_pred EEeeeehhhhhhhHH-HHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC-c--EE-EEEEe
Confidence 5677776653 222 44442 367899999999999988887776666555433222221 1111 1 23 34445
Q ss_pred hcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHH
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (385)
.+|+..| -.+.+...+.+.-.|..|.+..++.+..++....... .+- ...+..++++.. +....+|.+.+
T Consensus 104 slg~efg-gsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~---i~g--i~~vt~~ill~i----~~ag~~w~~k~ 173 (643)
T KOG2083|consen 104 SLGPEFG-GSIGIIYAFANAVATAMYVVGFAESVAHLFETESKEM---IDG--IGSVTVLILLAI----NVAGVEWEAKL 173 (643)
T ss_pred ccccccc-chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHH---hcc--hhHHHHHHHHHh----hhccchhHHHH
Confidence 6777777 5666666676777778899999999888887753111 111 111122222222 33445555555
Q ss_pred HHHHHHHHHhhe---eeeeeee-c-CCCC---ccc-ccccccccchh---hhHHHHHhhHHhhccCceeehhccccCCCC
Q 016636 193 AAVMSLSYSTIA---WSASVRK-G-VQPD---VAY-GYKAKTAAGTV---FNFFSALGDVAFAYAGHNVVLEIQATIPST 260 (385)
Q Consensus 193 ~~~~~~~~~~~~---~~~~~~~-~-~~~~---~~~-~~~~~~~~~~~---~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~ 260 (385)
.++..++.++.+ ++..+.. . ...+ ... ....+. ..++ ..+|+.|++++=+..|...=..+..++
T Consensus 174 q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~-~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL--- 249 (643)
T KOG2083|consen 174 QIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENL-NPDIDPGYTFFSVFAVFFPAATGILAGANISGDL--- 249 (643)
T ss_pred HHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCC-CCCcCCCCceEeeeeeecchhhhhhccccccCCC---
Confidence 555433322221 1111111 1 0000 000 000000 1112 267777888888887776666777777
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhHH
Q 016636 261 PEKPSKGPMWRGVVVAYIVVALCYFPVA 288 (385)
Q Consensus 261 ~~~p~~~~~~~~~~~s~~~~~~~Y~~~g 288 (385)
++|++ .+++....+..+...+|+.+.
T Consensus 250 -~~Pq~-~IP~GaL~Ai~vst~~yl~~i 275 (643)
T KOG2083|consen 250 -KDPQK-AIPLGALLAIGVSTLLYLIFI 275 (643)
T ss_pred -CCchh-hcccchhhhhhhhhhhhhhhh
Confidence 78887 688999999999999996653
No 72
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.35 E-value=0.014 Score=57.41 Aligned_cols=295 Identities=13% Similarity=0.109 Sum_probs=130.6
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhC--chHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLG--WGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G--~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
++|+.++++-...-....+....+.+-......| +..+++..++..++...-..+...... +.+ .++.-+.|..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~-r~G---l~~~v~sR~~ 80 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGP-RTG---LPTMVLSRAS 80 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHH-CC------HHHHTTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccc-ccC---CCchhcchhc
Confidence 4556566666666666665555555444432333 333555555544444444444444333 333 3788999999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcC-C-------CccccchhhhHHHHHHHHHhhCCCCchh
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKE-P-------CKEIKLSYFIMIFASVHFVLSHLPNFNA 185 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~-~-------~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 185 (385)
||.+ |..+..+...+...|=........++.+..+.+...+. . ..........++..++..+.. ....+.
T Consensus 81 FG~~-Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~g~~~ 158 (440)
T PF02133_consen 81 FGYR-GSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFA-IYGMKA 158 (440)
T ss_dssp S-TT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHH-CTHHHH
T ss_pred cCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHH-hcCHHH
Confidence 9964 76777777777777777777778888888887765320 0 000111111122222333332 234555
Q ss_pred hHHHHHHHHHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCc-eeehhccccCCCCCCCC
Q 016636 186 IAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGH-NVVLEIQATIPSTPEKP 264 (385)
Q Consensus 186 l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~-~~~~~i~~~m~~~~~~p 264 (385)
+++.............+....+...+... +..... ...+.....+..++....-.+... .+.+...+.+ |++
T Consensus 159 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~----~~~ 231 (440)
T PF02133_consen 159 LRRLAVIAAPILLVVFIGMLIWALSKAGG-GPLLSA--PASPSPSGSFLAAIALVIGSWISWAPNASDYSRYA----KSD 231 (440)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHCT--HHHCCS----S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC------H
T ss_pred HHhHHhhhhHHHHhhhhheeEEEeecCCc-chhhhC--cccchhHHHHHHHHHHHHhhhhhhhhccccHHhhC----CCC
Confidence 66555554443332211111121111111 101110 011111113444444433333333 5667888888 333
Q ss_pred CCCCCchhhhHHHHHHHHHHHhHHhHhhhc----cCCcchh--hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHH
Q 016636 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWM----FGNKVED--NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFD 338 (385)
Q Consensus 265 ~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~----fG~~~~~--~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~ 338 (385)
+ +-.+...++.....+....+++.+... .++..-+ +++..+.+.-+.....-+.......+..-...++..-
T Consensus 232 ~--~~~~~~~~~~~~~~~~~~~~g~lg~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~i~~~~~~~~~~~n~ys~~~ 309 (440)
T PF02133_consen 232 T--SAWWGFWLGFPGGFIPFVLVGILGAAAGGIADGEPIWDPLQILGAFLPPFGGFFPALLILFASIWTNNAANLYSAGL 309 (440)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHTS--HHHHHHHHH-HHHHHHHTTHHHHHTHHHHH
T ss_pred C--CcEEEEeehhhhHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhHhhHHH
Confidence 3 333666677766666666666655443 3333222 3334443210211222222222333344556677666
Q ss_pred HHHHHHh
Q 016636 339 MIETLLV 345 (385)
Q Consensus 339 ~l~~~~~ 345 (385)
.+.+.+.
T Consensus 310 ~l~~~~~ 316 (440)
T PF02133_consen 310 ALQNIFP 316 (440)
T ss_dssp HHHCCST
T ss_pred HHHHccc
Confidence 6666654
No 73
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=96.29 E-value=1.2 Score=45.39 Aligned_cols=151 Identities=11% Similarity=0.068 Sum_probs=90.5
Q ss_pred cccCCCchhHHHHHHHHhhhhhh-hhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
...|+.+++...+.+..+.++++ .++.|......|+.. ....+...+.......++.+-.++ .+ ..|-+|+.++=
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p~~rr-~~--~~T~~e~l~~R 104 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAPYLRK-FG--KYTVPDFIGDR 104 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHH-CC--CccHHHHHHHH
Confidence 46789999999999999988775 468887766777632 222111111112233444443332 22 45899999999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
||++..|++..+...+..+.-....+...+..++.+++ ++...-+++..+++.-.+..--++...+.-.+.
T Consensus 105 f~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g---------i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ 175 (552)
T TIGR03648 105 YYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE---------VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQ 175 (552)
T ss_pred hCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 98665556665555555554444445555554444432 233444455555666667777888888888877
Q ss_pred HHHHH
Q 016636 194 AVMSL 198 (385)
Q Consensus 194 ~~~~~ 198 (385)
.+..+
T Consensus 176 ~iim~ 180 (552)
T TIGR03648 176 YIVLI 180 (552)
T ss_pred HHHHH
Confidence 65443
No 74
>PRK09395 actP acetate permease; Provisional
Probab=96.15 E-value=0.42 Score=48.56 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=87.9
Q ss_pred cccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
-..|+.+++...+.+..+.++++. +..|......|+.. ....+...+-......++.+-.+ +.+..|++|+.+.=
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r---~~g~~T~~d~l~~R 141 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLR---NLGKYTFADVASYR 141 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHh---hCCCccHHHHHHHH
Confidence 356788888888888888888755 68998777778742 22211111111122223333222 22246999999999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
||++.-|.+..+...+..+....+.++..+..++.++ .++....+++..+++.-.+..--++...+...+.
T Consensus 142 ygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~---------gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ 212 (551)
T PRK09395 142 LKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLF---------GLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIK 212 (551)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 9865344555444444333333444444444444432 1334444555566666677777888888888877
Q ss_pred HHHHHH
Q 016636 194 AVMSLS 199 (385)
Q Consensus 194 ~~~~~~ 199 (385)
.+..+.
T Consensus 213 ~iim~~ 218 (551)
T PRK09395 213 AVLLLS 218 (551)
T ss_pred HHHHHH
Confidence 664443
No 75
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=96.10 E-value=0.08 Score=51.52 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=82.0
Q ss_pred ccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
..|+.+++...+.+..+.+|.+. +..|....+.|+.. ....+...+........+.+-.+ +.+ ..|.+|+.++-|
T Consensus 4 agr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r-~~~--~~T~~e~~~~Ry 79 (406)
T PF00474_consen 4 AGRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLR-RSG--AVTIPEYLEKRY 79 (406)
T ss_dssp --S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHH-HTT----SHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhc-ccc--hhhhhhhhhhhc
Confidence 35778889999999999988854 68898888888753 33333333333334444444332 222 459999999999
Q ss_pred Cccc-cccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 115 GEKL-GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 115 G~~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
|++. .+.+..+...+.........+...+..++.+.+ ++....+++..+++.-....--++...+...+.
T Consensus 80 g~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g---------i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ 150 (406)
T PF00474_consen 80 GSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG---------IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQ 150 (406)
T ss_dssp -HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHTTCTT------SHHHHH
T ss_pred CCchhhhhhcccccchhhhhhhhccccccccchhhccc---------hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHH
Confidence 9875 234444444454545555555555655554432 333444555566666677777788888777777
Q ss_pred HHHHHH
Q 016636 194 AVMSLS 199 (385)
Q Consensus 194 ~~~~~~ 199 (385)
.+..++
T Consensus 151 ~~i~~~ 156 (406)
T PF00474_consen 151 GVIMII 156 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765443
No 76
>PRK15015 carbon starvation protein A; Provisional
Probab=96.04 E-value=0.056 Score=54.33 Aligned_cols=143 Identities=21% Similarity=0.163 Sum_probs=86.5
Q ss_pred hHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcch-hcCCcccccHHHHHHHhcCcccccc
Q 016636 43 WYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE-MVPGKRFDRYHELGQHAFGEKLGLY 121 (385)
Q Consensus 43 ~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~-~~~~~~~~~y~~i~~~~~G~~~~~~ 121 (385)
+-..-+=..++-|+|-+.=|....+.||+++++..++..++..--..+..-... ++.+ .|.+|++++-.|++.+ .
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R~~G---rSig~ia~~~iG~~~~-~ 161 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDG---RSLGELVKEEMGPTAG-V 161 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeecCCC---ccHHHHHHHHhhHHHH-H
Confidence 344446678899999999999999999999988887766655443333333222 2333 3999999999998644 6
Q ss_pred chhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhC-CCCchhhHHHHHHHHHHHH
Q 016636 122 IVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH-LPNFNAIAGVSLAAAVMSL 198 (385)
Q Consensus 122 ~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~-~~~l~~l~~~s~~~~~~~~ 198 (385)
+..+..++.+......+...+...+...- +-....++.+..++++-..+ .++.......|.++++..+
T Consensus 162 lfli~i~~iliiviAvfalvvv~al~~sP---------~~~fsv~~tIpiAl~mG~~l~~~r~g~v~~~SiiGvvll~ 230 (701)
T PRK15015 162 IALVACFMIMVIILAVLAMIVVKALTHSP---------WGTYTVAFTIPLALFMGIYLRYLRPGRIGEVSVIGLVFLI 230 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCc---------HHHHHHHHHHHHHHHHHHHheeecCCchHHHHHHHHHHHH
Confidence 66666666666666655555554442211 11112233333333333322 2345555566777666443
No 77
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=96.04 E-value=1.9 Score=43.15 Aligned_cols=154 Identities=13% Similarity=0.083 Sum_probs=83.5
Q ss_pred cccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcC--CcccccHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVP--GKRFDRYHELGQ 111 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~--~~~~~~y~~i~~ 111 (385)
-..|+.+++-..+.+..+.+++.. +..|......|+.. ........+........+.+-.+... +.+..|-+|+.+
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 457788898888888888887654 57887666778743 22222211222233333433221111 223568999999
Q ss_pred HhcCccccccch---hHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHH
Q 016636 112 HAFGEKLGLYIV---VPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (385)
Q Consensus 112 ~~~G~~~~~~~~---~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 188 (385)
.=||++.. .+. .+...+....-....+...+..++.+++ ++....+++..+++.-....-.++...+
T Consensus 112 ~Ryg~~~~-~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g---------i~~~~~iii~~~i~~~Yt~~GGl~av~~ 181 (487)
T TIGR02121 112 NRFNDKSR-LLRIISALIILVFFTIYTSSGLVAGGKLFESTFG---------LDYKTGLLIGALIIVIYTFFGGFLAVSW 181 (487)
T ss_pred HHhCCCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99996422 222 2222222222223333344444443321 2333444555566666677778888888
Q ss_pred HHHHHHHHHHH
Q 016636 189 VSLAAAVMSLS 199 (385)
Q Consensus 189 ~s~~~~~~~~~ 199 (385)
...+..+..++
T Consensus 182 TD~iQ~~i~~~ 192 (487)
T TIGR02121 182 TDFVQGLLMFF 192 (487)
T ss_pred HHHHHHHHHHH
Confidence 88877765443
No 78
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=95.66 E-value=0.78 Score=46.57 Aligned_cols=150 Identities=14% Similarity=0.170 Sum_probs=87.1
Q ss_pred cccCCCchhHHHHHHHHhhhhh-hhhhHHHHHHhhCchHHHHHHHHHHHHHH-HHHHHHHHcchhcCCcccccHHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGA-GVLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQH 112 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~-GiL~lP~af~~~G~~~gii~l~~~~~l~~-~s~~~l~~~~~~~~~~~~~~y~~i~~~ 112 (385)
-..|+.+++...+.+..+.+++ ..+..|......|+. ++... +...+.+ ....++.+-.+ +.+..|.+|+.++
T Consensus 64 laGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~-~g~~~~~~i~~~~~a~~lr---r~g~~T~~d~l~~ 138 (549)
T TIGR02711 64 TAGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYS-LGFLVGWPIILFLIAERLR---NLGRYTFADVASY 138 (549)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHH-HHHHHHHHHHHHHHHHHHH---HcCCccHHHHHHH
Confidence 3567778888888888887776 557999877777864 22222 1122222 22333343222 2224699999998
Q ss_pred hcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHH
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (385)
=||.|.-|.+..+...+..+.-....++..+..++.+++ ++...-+++..+++......--++...+...+
T Consensus 139 Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g---------i~~~~~iii~~~i~~~Yt~~GGm~av~~td~i 209 (549)
T TIGR02711 139 RLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG---------LNYHVAVVLVGILMVMYVLFGGMLATTWVQII 209 (549)
T ss_pred HcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 887654445555555544444444445555554444432 23333445555566666677788888888888
Q ss_pred HHHHHH
Q 016636 193 AAVMSL 198 (385)
Q Consensus 193 ~~~~~~ 198 (385)
..+..+
T Consensus 210 Q~~im~ 215 (549)
T TIGR02711 210 KAVLLL 215 (549)
T ss_pred HHHHHH
Confidence 776543
No 79
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=95.64 E-value=2.8 Score=42.09 Aligned_cols=153 Identities=10% Similarity=0.071 Sum_probs=84.5
Q ss_pred cccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHH-HHHHHHHHH-cchh-cCCcccccHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVE-MHEM-VPGKRFDRYHELG 110 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~-~~s~~~l~~-~~~~-~~~~~~~~y~~i~ 110 (385)
-..|+.+++-..+.+..+.+++.. ++.|....+.|+.. .. ..+...+. .....++.+ .... .-+.+..|.+|+.
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~~-~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l 114 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-SW-IAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYF 114 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHH
Confidence 467889999999999999988866 58898877888743 11 11111111 122222221 1100 0012246899999
Q ss_pred HHhcCccccccc---hhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhH
Q 016636 111 QHAFGEKLGLYI---VVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIA 187 (385)
Q Consensus 111 ~~~~G~~~~~~~---~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~ 187 (385)
++=||++ .|.+ ..+...+....-+.+-+...+..++.++ .++....+++..+++......--++...
T Consensus 115 ~~Ry~~~-~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~---------gi~~~~~iii~~~iv~iYt~~GGl~aV~ 184 (502)
T PRK15419 115 TGRFEDK-SRILRIISALVILLFFTIYCASGIVAGARLFESTF---------GMSYETALWAGAAATILYTFIGGFLAVS 184 (502)
T ss_pred HHHhCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999864 2222 2222222222222333333344433332 1333444555566677777788888888
Q ss_pred HHHHHHHHHHHH
Q 016636 188 GVSLAAAVMSLS 199 (385)
Q Consensus 188 ~~s~~~~~~~~~ 199 (385)
+.-.+..+..+.
T Consensus 185 ~TD~iQ~~imi~ 196 (502)
T PRK15419 185 WTDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHHH
Confidence 888888765443
No 80
>PRK10484 putative transporter; Provisional
Probab=95.45 E-value=1.5 Score=44.27 Aligned_cols=154 Identities=12% Similarity=0.037 Sum_probs=78.3
Q ss_pred cccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHH-HHHHHHHHHcchhcCCcccccHHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~-~~s~~~l~~~~~~~~~~~~~~y~~i~~~ 112 (385)
-..|+.+++-..+.+..+.++++. +..|....+.|+... . +...+.+. ......+..-.. +.+..|.+|+.++
T Consensus 35 lagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~-~-~~~~~~~~~~~~~~~~~p~~~---r~~~~T~~e~l~~ 109 (523)
T PRK10484 35 LAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVM-A-WEVTAAIALIILALIFLPRYL---KSGITTIPDFLEE 109 (523)
T ss_pred ecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHH-H-HHHHHHHHHHHHHHHHHHHHH---hcCCccHHHHHHH
Confidence 467888999999999888888765 588877667786421 1 11111111 122233332221 2235699999999
Q ss_pred hcCccccccchhHHHHHHhhhh-hhhhhhhhccchHHHHHH--hhcCCCccccchh--hh--HHHHHHHHHhhCCCCchh
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGV-CIVYMVTGGKSLHKVHEL--LCKEPCKEIKLSY--FI--MIFASVHFVLSHLPNFNA 185 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~-~~~y~i~~~~~l~~l~~~--~~~~~~~~~~~~~--~~--~i~~~i~~pl~~~~~l~~ 185 (385)
-||++.. .+......+..... +...+...+..++.+... .. ..+... +. ++..++....+..--++.
T Consensus 110 Ryg~~~~-~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~-----gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~a 183 (523)
T PRK10484 110 RYDKTTR-RIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELL-----GISYGAAIWLLVWLIGIIGAIYAVFGGLKA 183 (523)
T ss_pred hcCchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhc-----CCcHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 9997644 33333322222221 111122222222222211 11 112111 11 122334455566667888
Q ss_pred hHHHHHHHHHHHHH
Q 016636 186 IAGVSLAAAVMSLS 199 (385)
Q Consensus 186 l~~~s~~~~~~~~~ 199 (385)
..+.-.+..+..++
T Consensus 184 V~~TD~iQ~vim~i 197 (523)
T PRK10484 184 VAVSDTINGIGLLI 197 (523)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888765443
No 81
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.19 E-value=0.15 Score=50.25 Aligned_cols=103 Identities=20% Similarity=0.234 Sum_probs=72.8
Q ss_pred CCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcch-hcCCcccccHHHHHHHhcCcc
Q 016636 39 NAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE-MVPGKRFDRYHELGQHAFGEK 117 (385)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~-~~~~~~~~~y~~i~~~~~G~~ 117 (385)
..+.+...-+=..++-|+|-+.=|-.-++.||.+|.+..++-+++..--..++.-... ++.+ .|.+|++++-+|++
T Consensus 51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G---~Si~~ia~~~lG~~ 127 (575)
T COG1966 51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGG---KSIGEIAGKYLGRT 127 (575)
T ss_pred cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCC---ccHHHHHHHHhhhh
Confidence 4455666677788899999999999999999999988887776665544444443332 2333 39999999999987
Q ss_pred ccccchhHHHHHHhhhhhhhhhhhhccc
Q 016636 118 LGLYIVVPQQLIVEVGVCIVYMVTGGKS 145 (385)
Q Consensus 118 ~~~~~~~~~~~~~~~g~~~~y~i~~~~~ 145 (385)
.+ .+..+...+......+.+.....+.
T Consensus 128 a~-~~~~~~~l~iliiv~Avfa~vv~~~ 154 (575)
T COG1966 128 AK-VFFLLLALILLILVGAVFAAVIAKL 154 (575)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 6666666665555555555544444
No 82
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=94.48 E-value=0.95 Score=43.83 Aligned_cols=244 Identities=12% Similarity=0.120 Sum_probs=118.6
Q ss_pred cCCCchhHHHHHHHHhhhhhhhh-hHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcc-hhcC-CcccccHHHHHHHh
Q 016636 37 SRNAKWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMH-EMVP-GKRFDRYHELGQHA 113 (385)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL-~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~-~~~~-~~~~~~y~~i~~~~ 113 (385)
+.-.|...-++..+++.+|.|=. -.||...+.|-..=++..++ .++..=--.++.|.. -++. ++...+|+++..
T Consensus 6 e~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli-~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~-- 82 (439)
T COG0733 6 EQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLI-FLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAP-- 82 (439)
T ss_pred cchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHH-HHHHHhHHHHHHHHHhhhhcCCChhHHHHHhcc--
Confidence 34567788888999999999865 89998777775432222222 222222223334432 1111 222346666664
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCC---Cc-------cccc-hhhhHHHHHH---HHHhhC
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP---CK-------EIKL-SYFIMIFASV---HFVLSH 179 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~---~~-------~~~~-~~~~~i~~~i---~~pl~~ 179 (385)
+|++. .+.....+..+..+.-|.++.+=.+.-+.....+.- .. .... ....+...++ +--+..
T Consensus 83 -~~~~~--~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv 159 (439)
T COG0733 83 -KKKWE--WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIV 159 (439)
T ss_pred -Cccch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence 33322 333333444455555555555444443333332110 00 0001 1111111111 111122
Q ss_pred CCCchh-hHHHHHHHHHHHHHHHhheeeeeeee-cCCCCccccc-ccccccchhhhHHHHHhhHHhhccCc-eeehhccc
Q 016636 180 LPNFNA-IAGVSLAAAVMSLSYSTIAWSASVRK-GVQPDVAYGY-KAKTAAGTVFNFFSALGDVAFAYAGH-NVVLEIQA 255 (385)
Q Consensus 180 ~~~l~~-l~~~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fsf~~~-~~~~~i~~ 255 (385)
.|.+++ +.+.+.+-+...++..++.+++.+.. +..++.+.-+ ++.....++.-...++|...|+-.-- ..+.+..+
T Consensus 160 ~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsS 239 (439)
T COG0733 160 SRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSS 239 (439)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234433 77777777776665555555555432 2122222211 12222234566788999999988766 44455555
Q ss_pred cCCCCCCCCCCCCCchhhhHHHHHHHHHHHhHHhHhh
Q 016636 256 TIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGY 292 (385)
Q Consensus 256 ~m~~~~~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy 292 (385)
.+ |+|.++.+........-+.+=++.|+...
T Consensus 240 YL------~k~~~l~~sa~~v~~~n~~~s~lAGl~If 270 (439)
T COG0733 240 YL------SKKSDLVSSALSIVLLNTLISLLAGLVIF 270 (439)
T ss_pred hc------CcccchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 56 33345666666666655666555554443
No 83
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.24 E-value=1.1 Score=43.73 Aligned_cols=288 Identities=17% Similarity=0.191 Sum_probs=135.6
Q ss_pred CCchhHHHHHHHHhhhhhhhhhHHHHH---HhhCchHHHHHHHHHHHHHH-HHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 39 NAKWWYSAFHNVTAMVGAGVLSLPYAM---AQLGWGPGVAILILSWIITL-YTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~af---~~~G~~~gii~l~~~~~l~~-~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
|.......+.+.....|+|=|-.|-.. +..-|..+.+-+++.++.-- .+...+.+ .+. +++++++++
T Consensus 2 ~k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~-----~~~---~~~~l~~~v- 72 (427)
T PF05525_consen 2 KKDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAK-----SGG---GIEDLASRV- 72 (427)
T ss_pred cchhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh-----cCC---CHHHHhccc-
Confidence 344566778899999999999999653 23345556665555554432 22222222 121 788888875
Q ss_pred CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 016636 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (385)
||+.++ +......+ +.|-..+-=...+-..+--...+.+. ...+......+++..+.+-+++-+ -+-+.++...-.
T Consensus 73 ~~~f~~-if~~~i~l-~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~~~~~ifs~iFF~i~~~l~~~p-~kivd~iGk~LT 148 (427)
T PF05525_consen 73 GPKFAL-IFTILIYL-SIGPLFAIPRTAAVSFEMGIAPFFPE-NSNISLLIFSIIFFAITYLLSLNP-SKIVDRIGKFLT 148 (427)
T ss_pred CcHHHH-HHHHHHHH-HHHhcccCcchhhhhHHHhhhccCCc-ccccchhhhhHHHHHHHHHHHhch-hhHHHHHHHHHH
Confidence 666663 22222221 22222111111121222111111111 123444555556665666565543 333444444444
Q ss_pred HHHHHHHhheeeeeeeecCCC--Ccccccccccccchhh---hHHHHHhhHHhhccCceeehhccccCCCCCCCCCC--C
Q 016636 195 VMSLSYSTIAWSASVRKGVQP--DVAYGYKAKTAAGTVF---NFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSK--G 267 (385)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~--~ 267 (385)
-..++.+.++++..+.+...+ ++...+.+.....++. +-+.+++-+.|+-... -.+ ++..- +++++ +
T Consensus 149 P~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi---~~i-~~~g~--~~~k~~~~ 222 (427)
T PF05525_consen 149 PILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIII---NAI-RQKGY--KDKKEIKK 222 (427)
T ss_pred HHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHH---HHH-HHhCC--CCHHHHHH
Confidence 433433333333434332111 1111121111111222 2233444444443322 222 22210 11111 1
Q ss_pred CCchhhhHHHHHHHHHHHhHHhHhhhccC---Ccch-hhHhhcCCC---chHHHHHHHHHHHHHHHHhhhccccchHHHH
Q 016636 268 PMWRGVVVAYIVVALCYFPVALIGYWMFG---NKVE-DNILLSLEK---PTWLIVMANFFVVVHVIGSYQIYAMPVFDMI 340 (385)
Q Consensus 268 ~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG---~~~~-~~il~~~~~---~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l 340 (385)
...++-.++.....++|...+..|...-+ +..+ +.++....+ ++....+..+.+.+.++++---....+.|.+
T Consensus 223 ~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf 302 (427)
T PF05525_consen 223 YTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYF 302 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233446666777888888888877654 3333 344444421 1334556667777777777666777778888
Q ss_pred HHHHh
Q 016636 341 ETLLV 345 (385)
Q Consensus 341 ~~~~~ 345 (385)
++.+.
T Consensus 303 ~~~~~ 307 (427)
T PF05525_consen 303 SELFP 307 (427)
T ss_pred HHHhc
Confidence 88775
No 84
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=94.21 E-value=1.3 Score=42.28 Aligned_cols=81 Identities=10% Similarity=0.154 Sum_probs=48.3
Q ss_pred cHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhC--CCC
Q 016636 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH--LPN 182 (385)
Q Consensus 105 ~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~--~~~ 182 (385)
+..|..++-+||++. +...+...+......++.....+.-++.+. .++...+.++..+..+-+.+ .++
T Consensus 43 ~l~~~~~~~~g~~~~-~~~~~~~~l~~~~~~~~~~~g~a~al~ll~---------g~~~~~~~~~~~~~~~~ll~~~~~~ 112 (358)
T PF01566_consen 43 GLAEGIRERFGRGWA-WFLWILIFLANIATQAAEIIGIAIALNLLF---------GIPLWIWVLLVAVIAILLLWLSSGG 112 (358)
T ss_pred ChhhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------CCCcHHHHHHHHHHHHHHHHHHhcc
Confidence 788888888888766 666666666666666665555554444332 12335555555555444444 566
Q ss_pred chhhHHHHHHHHH
Q 016636 183 FNAIAGVSLAAAV 195 (385)
Q Consensus 183 l~~l~~~s~~~~~ 195 (385)
.+.+.++...-+.
T Consensus 113 y~~~E~~~~~lv~ 125 (358)
T PF01566_consen 113 YRRLERILKVLVA 125 (358)
T ss_pred chHHHHHHHHHHH
Confidence 6666666554444
No 85
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=92.89 E-value=0.31 Score=47.41 Aligned_cols=76 Identities=14% Similarity=0.350 Sum_probs=58.7
Q ss_pred ccHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCc
Q 016636 104 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 183 (385)
Q Consensus 104 ~~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l 183 (385)
.-..+++++.+|+ .|..+..+...+.|+-++++.....+|++++..+. .+++.|+++..++.+.++.. .+
T Consensus 261 ~lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k--------isY~~~v~i~~i~S~~ian~-Gl 330 (427)
T PF05525_consen 261 ELLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFPK--------ISYKVWVIIFTIFSFIIANL-GL 330 (427)
T ss_pred HHHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------cChHHHHHHHHHHHHHHHHh-CH
Confidence 3577899999995 68899999999999999999999999999998763 34667777777776666544 34
Q ss_pred hhhHHH
Q 016636 184 NAIAGV 189 (385)
Q Consensus 184 ~~l~~~ 189 (385)
+.+-..
T Consensus 331 ~~Ii~~ 336 (427)
T PF05525_consen 331 DQIIKI 336 (427)
T ss_pred HHHHHH
Confidence 433333
No 86
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=92.57 E-value=0.29 Score=46.98 Aligned_cols=79 Identities=16% Similarity=0.354 Sum_probs=56.9
Q ss_pred cccHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCC
Q 016636 103 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 182 (385)
Q Consensus 103 ~~~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~ 182 (385)
..-..+++++.+|+ .|..+..+...+.|+.++++.....+|+++++.+. .++..|+++..++.+-++.. .
T Consensus 254 ~~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k--------~~y~~~v~~~~l~s~~ia~~-G 323 (378)
T TIGR00796 254 AQILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK--------LSYKTWVIVFTLFSFIVANL-G 323 (378)
T ss_pred HHHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHHh-C
Confidence 34678999999996 57799999999999999999999999998887542 34455666655555444433 4
Q ss_pred chhhHHHHH
Q 016636 183 FNAIAGVSL 191 (385)
Q Consensus 183 l~~l~~~s~ 191 (385)
++.+-..+.
T Consensus 324 l~~Ii~~~~ 332 (378)
T TIGR00796 324 LTQIISISI 332 (378)
T ss_pred HHHHHHHHH
Confidence 444444333
No 87
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=91.87 E-value=9.5 Score=37.11 Aligned_cols=84 Identities=13% Similarity=0.106 Sum_probs=49.7
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhh-hHHHHHHhhCchHHHHHHHHHHHHHH---HHHHHHHHcchhcCCcc--cccHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVAILILSWIITL---YTLWQMVEMHEMVPGKR--FDRYHE 108 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL-~lP~af~~~G~~~gii~l~~~~~l~~---~s~~~l~~~~~~~~~~~--~~~y~~ 108 (385)
+++++.|.+|+.+..+.+.+|+|=+ ...-|....|.. ++..+-+.+++.. |+=..|..-.+..+++. .=.=..
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~y 92 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMY 92 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHH
Confidence 4566899999999999999999865 788888777743 4444444444433 33333333222122211 011345
Q ss_pred HHHHhcCcccc
Q 016636 109 LGQHAFGEKLG 119 (385)
Q Consensus 109 i~~~~~G~~~~ 119 (385)
+.++.+|+||-
T Consensus 93 yi~~gl~~k~l 103 (416)
T PF01235_consen 93 YIEKGLGSKWL 103 (416)
T ss_pred HHHHHhccchH
Confidence 66777776543
No 88
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=91.09 E-value=9.2 Score=38.61 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=24.2
Q ss_pred CchhHHHHHHHHhhhhhh-hhhHHHHHHhhCc
Q 016636 40 AKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGW 70 (385)
Q Consensus 40 ~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~ 70 (385)
.|..+-++..++..+|.| +.-.|+-..+-|-
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG 36 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENGG 36 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTT
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 355778888999999998 6799998666663
No 89
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=90.03 E-value=6.4 Score=38.55 Aligned_cols=180 Identities=14% Similarity=0.090 Sum_probs=100.6
Q ss_pred cccHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCC
Q 016636 103 FDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPN 182 (385)
Q Consensus 103 ~~~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~ 182 (385)
+.|++|+...=|+.+.-|++..+..++..+.-.++.++..+..+..++. .+...-+++..+++.....+-.
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g---------v~~~vgv~ig~ilm~~Yvv~GG 173 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG---------VPYHVGVVIGGILMMVYVVLGG 173 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC---------CCceeehhhHhHHHHHHHHhcc
Confidence 5699999888887766666666665555555556666666655555543 2334445556666666777778
Q ss_pred chhhHHHHHHHHHHHHHHHhh-eeeeeeeecCCCCccc-----------ccccccccchhhhHHHHHhhHHhhccCceee
Q 016636 183 FNAIAGVSLAAAVMSLSYSTI-AWSASVRKGVQPDVAY-----------GYKAKTAAGTVFNFFSALGDVAFAYAGHNVV 250 (385)
Q Consensus 183 l~~l~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~ 250 (385)
++...|...+.-+..+....+ .+......+.++.+.. +.....+.....+-.+.++..+--..|..-+
T Consensus 174 M~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgL 253 (529)
T COG4147 174 MKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGL 253 (529)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCC
Confidence 888888888766633321111 1111111111111000 0000011111234445555555555566666
Q ss_pred hhccccCCCCCCCCCCCCCchhhhHHHHHHHHHHHhHHhHhhhc
Q 016636 251 LEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWM 294 (385)
Q Consensus 251 ~~i~~~m~~~~~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~ 294 (385)
|++.--.= ..|+-|.-++++.++.....++|+..-+.|+.+
T Consensus 254 PHil~RFf---Tvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 254 PHILMRFF---TVPDAKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred CeEEEEEE---ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66643210 234445556999999999999999887777653
No 90
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=89.83 E-value=7.1 Score=38.21 Aligned_cols=276 Identities=12% Similarity=0.111 Sum_probs=131.2
Q ss_pred chhHHHHHHHHhhhhhhhhhHHHHHH-hhC--chHHHHHHHHHHHHH-HHHHHHHHHcchhcCCcccccHHHHHHHhcCc
Q 016636 41 KWWYSAFHNVTAMVGAGVLSLPYAMA-QLG--WGPGVAILILSWIIT-LYTLWQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (385)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL~lP~af~-~~G--~~~gii~l~~~~~l~-~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~ 116 (385)
..+...+.+.....|+|=|-.|-..- ++| |..+.+-+++.++.- ..+...+.+ .+ + +++++++++ ||
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~-----~~-g--~~~~l~~rv-~~ 79 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAK-----VG-G--GVDSLSTPI-GK 79 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh-----cC-C--CHHHHhhhc-ch
Confidence 56778899999999999999996532 233 444544444444332 222222222 22 1 788988875 66
Q ss_pred cccccchhHHHHHHhhhhh--------hhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHH
Q 016636 117 KLGLYIVVPQQLIVEVGVC--------IVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (385)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~--------~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 188 (385)
+.+ .+..... ..+.|-+ ++|=+.+.-.+++ .......+.+++..+.+-+++-+ =+-+.+
T Consensus 80 ~f~-~~f~~~i-~l~IGP~~aiPRtaavsfEm~i~p~~~~----------~~~~~~ifs~iFF~i~~~l~l~p-~klvd~ 146 (439)
T PRK15433 80 VAG-VLLATVC-YLAVGPLFATPRTATVSFEVGIAPLTGD----------SALPLFIYSLVYFAIVILVSLYP-GKLLDT 146 (439)
T ss_pred HHH-HHHHHHH-HHHHhhccccCCccccchhheeeccCCc----------ccHHHHHHHHHHHHHHHHHHcCh-hhHHHH
Confidence 666 2332222 2233322 2222222222111 01122234445555555555543 233334
Q ss_pred HHHHHHHHHHHHHhheeeeeeeecCCC--Ccccccccccccchhh---hHHHHHhhHHhhccCceeehhcccc-CCCCCC
Q 016636 189 VSLAAAVMSLSYSTIAWSASVRKGVQP--DVAYGYKAKTAAGTVF---NFFSALGDVAFAYAGHNVVLEIQAT-IPSTPE 262 (385)
Q Consensus 189 ~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~fsf~~~~~~~~i~~~-m~~~~~ 262 (385)
+...-.-..++.+.++++..+.+...+ .++..+++.....++. +-+.+++-..|+-.... .+.+. . +
T Consensus 147 iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~---~i~~~G~----~ 219 (439)
T PRK15433 147 VGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVN---AARSRGV----T 219 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHcCC----C
Confidence 444444333333333333333321111 1111121111111222 23456666666644333 23222 3 2
Q ss_pred CCCC--CCCchhhhHHHHHHHHHHHhHHhHhhhc---cCCc-chhhHhhcCC---CchHHHHHHHHHHHHHHHHhhhccc
Q 016636 263 KPSK--GPMWRGVVVAYIVVALCYFPVALIGYWM---FGNK-VEDNILLSLE---KPTWLIVMANFFVVVHVIGSYQIYA 333 (385)
Q Consensus 263 ~p~~--~~~~~~~~~s~~~~~~~Y~~~g~~gy~~---fG~~-~~~~il~~~~---~~~~~~~~~~~~~~~~~~~s~pl~~ 333 (385)
++++ +...++-.++.....++|...+..|... +++. ..+.++.... -+++...+..+.+.+.++++---..
T Consensus 220 ~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi 299 (439)
T PRK15433 220 EARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLT 299 (439)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2221 1223444466677788888888888765 3333 2334444432 1244555666666677777766677
Q ss_pred cchHHHHHHHHh
Q 016636 334 MPVFDMIETLLV 345 (385)
Q Consensus 334 ~p~~~~l~~~~~ 345 (385)
..+.+.+++.+.
T Consensus 300 ~a~a~~f~~~~~ 311 (439)
T PRK15433 300 CACAEFFAQYVP 311 (439)
T ss_pred HHHHHHHHhhcC
Confidence 777777777653
No 91
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=89.80 E-value=1 Score=46.11 Aligned_cols=102 Identities=15% Similarity=0.263 Sum_probs=69.7
Q ss_pred hHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcch--hcCCcccccHHHHHHHhcCcccc
Q 016636 43 WYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHE--MVPGKRFDRYHELGQHAFGEKLG 119 (385)
Q Consensus 43 ~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~--~~~~~~~~~y~~i~~~~~G~~~~ 119 (385)
..-..=-+..+.|.=. +-+-+..-.+|...+.++.++|++.+.+|+.=+...+. ..+.-+ +|.-+.+ .+||.+|
T Consensus 118 mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG--sYfmISR-sLGPEFG 194 (1075)
T KOG2082|consen 118 MGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG--SYFMISR-SLGPEFG 194 (1075)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC--eeEEEec-ccCcccc
Confidence 3334445566666644 46778888889988999999998888888777766543 234433 6766655 5788888
Q ss_pred ccchhHHHHHHhhhhhhhhhhhhccchHH
Q 016636 120 LYIVVPQQLIVEVGVCIVYMVTGGKSLHK 148 (385)
Q Consensus 120 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 148 (385)
-.+.+|..+-.-.....|++..-+.+-.
T Consensus 195 -gAVGlcFYLgtT~AaaMYIlGaVEi~L~ 222 (1075)
T KOG2082|consen 195 -GAVGLCFYLGTTVAAAMYILGAVEIFLT 222 (1075)
T ss_pred -ceeeehhhhhhHHHHHHHHHhHHHHHHH
Confidence 7888887776666666777766665444
No 92
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=89.00 E-value=13 Score=36.16 Aligned_cols=137 Identities=19% Similarity=0.134 Sum_probs=71.3
Q ss_pred CCchhHHHHHHHHhhhhhhhhhHHHH-HHhhCchHHHHHHHHHHHHHHHHH-HHHHHcchhcCCcccccHHHHHHHhcCc
Q 016636 39 NAKWWYSAFHNVTAMVGAGVLSLPYA-MAQLGWGPGVAILILSWIITLYTL-WQMVEMHEMVPGKRFDRYHELGQHAFGE 116 (385)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~a-f~~~G~~~gii~l~~~~~l~~~s~-~~l~~~~~~~~~~~~~~y~~i~~~~~G~ 116 (385)
+.+.....+....+-+|.|=.+--.. =++.|+-..++ ++...+..+-. .+-.|.. ..++. +.+|..++-|++
T Consensus 16 ~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~v--ills~l~~~~~Q~~~arLg-ivTG~---~laq~ir~~y~~ 89 (416)
T COG1914 16 LLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWV--ILLSNLMAYILQELSARLG-IVTGK---GLAEAIRERYLP 89 (416)
T ss_pred HHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHhCC---cHHHHHHHHccc
Confidence 34555555666666666665544332 33455533221 22111111111 1111111 13343 788888888998
Q ss_pred cccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHH
Q 016636 117 KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSL 191 (385)
Q Consensus 117 ~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~ 191 (385)
+++ ++..+...+....+.++.....+--++-+... ...+-.++.++..+-....|..+.+..+..
T Consensus 90 ~~~-~~~~~~~~i~~~at~iae~~G~aial~ll~~i---------p~~~g~iItav~~~iil~~~~~r~~E~~v~ 154 (416)
T COG1914 90 GLG-ILLWILAEIAGIATDIAEVAGIAIALNLLFGI---------PLIIGAVITAVDVLIILLLKGYRLLERVVL 154 (416)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 888 78888888878888887777777665555322 223334444444444444444555554444
No 93
>PHA02764 hypothetical protein; Provisional
Probab=88.13 E-value=1.8 Score=40.04 Aligned_cols=91 Identities=11% Similarity=0.027 Sum_probs=60.5
Q ss_pred ccCCCchhHHHH-HHHHhhhhhhhhhHHHHHHhh--CchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHH
Q 016636 36 SSRNAKWWYSAF-HNVTAMVGAGVLSLPYAMAQL--GWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQH 112 (385)
Q Consensus 36 ~~~~~s~~~~~~-~l~~~~iG~GiL~lP~af~~~--G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~ 112 (385)
.-|..|.+++++ ++.+...|.++ +.|+-+... |.- .+..+++.++++........+...+.|+.+ .-....++
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPrAG--GdYVYISR 85 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPLNG--GDYAYIRT 85 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--ceEEEhHH
Confidence 346678888888 55555555544 556533333 433 556777788888888888888777777765 56667788
Q ss_pred hcCccccccchhHHHHHHh
Q 016636 113 AFGEKLGLYIVVPQQLIVE 131 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~ 131 (385)
++|+.+| .+..+..++..
T Consensus 86 AFGP~~G-FLvG~a~WLtl 103 (399)
T PHA02764 86 AFSSKFY-TIFGISLWLTY 103 (399)
T ss_pred hhCccHH-HHHHHHHHHHH
Confidence 9998777 66666655443
No 94
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=85.52 E-value=3.5 Score=39.59 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=74.8
Q ss_pred HHHhhhhhhhhhHH---HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhcCccccccchhH
Q 016636 49 NVTAMVGAGVLSLP---YAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVP 125 (385)
Q Consensus 49 l~~~~iG~GiL~lP---~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~G~~~~~~~~~~ 125 (385)
++|+.=.-|+-.-. ......|++.++.+.++...+.+....--. ... ..+++..=..+..++.+|+ .|+++...
T Consensus 207 Iv~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~-~~~-~~~nG~~IL~~~s~~~fG~-~G~~lL~~ 283 (431)
T COG1114 207 IVNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGATSAS-AAG-LAANGGQILSAYSQHLFGS-YGSILLGL 283 (431)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHh-hcc-cccchHHHHHHHHHHHhch-hhHHHHHH
Confidence 33444444444333 233355666555555544444444311000 000 1122233567889999995 78899999
Q ss_pred HHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhC
Q 016636 126 QQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH 179 (385)
Q Consensus 126 ~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 179 (385)
+..+.|+-++++....++|+++++.+. .++..|+.++.++.+..+-
T Consensus 284 iv~lACLTTaiGLi~a~aefF~~~~p~--------~SY~~~v~if~i~sflvan 329 (431)
T COG1114 284 IVFLACLTTAVGLIVACAEFFSKLVPK--------LSYKTWVIIFTLISFLVAN 329 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc--------ccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764 3456677777776665543
No 95
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=85.32 E-value=30 Score=34.14 Aligned_cols=303 Identities=13% Similarity=0.084 Sum_probs=136.2
Q ss_pred ccccccccc-cccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCch--HHHHHHHHHHHHHHHHHHHHHHcchhcCCcc
Q 016636 26 KAIDDWLPI-TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWG--PGVAILILSWIITLYTLWQMVEMHEMVPGKR 102 (385)
Q Consensus 26 ~~~~~~~~~-~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~--~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~ 102 (385)
..++|-+|. +++|.=|+++-+..=....++++.--+..+.-+.|+- .+++...+ .+....+.-....+++..
T Consensus 41 L~N~DL~Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~v-----G~~~~~~f~~lns~~G~~ 115 (572)
T KOG2466|consen 41 LTNPDLKPVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWV-----GYLFTAIFLVLNSRPGSD 115 (572)
T ss_pred ccCCCCCcCCcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHH-----HHHHHHHHHHHccCCCcc
Confidence 334444454 3455668888887777777777777676666677742 23333222 222222222222344442
Q ss_pred -cccHHHHHHHhcCc---cccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCC--------Cccccchhh--hH
Q 016636 103 -FDRYHELGQHAFGE---KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEP--------CKEIKLSYF--IM 168 (385)
Q Consensus 103 -~~~y~~i~~~~~G~---~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~--------~~~~~~~~~--~~ 168 (385)
+.+++-..+..||- .+. ++.++.+....+|+-+ -+.++-++-+++...+.. +.......+ -+
T Consensus 116 yhIsFpv~sR~sFGiygS~~p-Ii~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~Ff 191 (572)
T KOG2466|consen 116 YHISFPVLSRSSFGIYGSLWP-IINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFF 191 (572)
T ss_pred cccceeeeeeeehhhhHhHHH-HHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHH
Confidence 45666566666652 222 3444444444444322 245555555555544210 111222222 34
Q ss_pred HHHHHHHHhhCCC--CchhhHHHHHHHHHHHHHHHhheeeeeeeecCCCCcccc-ccccc-ccchhhhHHHHHhhHHhhc
Q 016636 169 IFASVHFVLSHLP--NFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYG-YKAKT-AAGTVFNFFSALGDVAFAY 244 (385)
Q Consensus 169 i~~~i~~pl~~~~--~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~fsf 244 (385)
++-++.+|+.+.+ +++.+-..+.+....... ..+++...+...-+.... ..+.. ....| .++. .++.++
T Consensus 192 IFwv~s~~~~~~~p~~ir~lf~~ka~~t~fA~~---g~LIw~l~kAhG~G~l~~~~st~~gs~~aW-a~~~---~i~~~~ 264 (572)
T KOG2466|consen 192 IFWVASLPFYWFPPYKIRHLFTWKAVLTPFAAF---GFLIWLLKKAHGLGHLFDSKSTVSGSAHAW-AFVR---SIMSCI 264 (572)
T ss_pred HHHHHhhheeeccHHHhhhHHHHHHhhhHHHHH---HHHHHHHHhcCCccccccCCCcccccchhH-HHHH---HHHHHH
Confidence 4455566776664 233333333333332222 122222222111110000 00011 11122 2222 222333
Q ss_pred cC----ceeehhccccCCCCCCCCCCCCCchhh--hHHHHHHHHHHHhHHhHhhhccCCcchh--hHhhcCCC-----ch
Q 016636 245 AG----HNVVLEIQATIPSTPEKPSKGPMWRGV--VVAYIVVALCYFPVALIGYWMFGNKVED--NILLSLEK-----PT 311 (385)
Q Consensus 245 ~~----~~~~~~i~~~m~~~~~~p~~~~~~~~~--~~s~~~~~~~Y~~~g~~gy~~fG~~~~~--~il~~~~~-----~~ 311 (385)
.+ ..|.|...+-- ++|.+......+ .+.+.+..++=++.+..++..||.+--+ +++.++-+ +.
T Consensus 265 ~~fstl~~N~pDFsRF~----ksp~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l~~~y~~G~ 340 (572)
T KOG2466|consen 265 ANFSTLIVNAPDFSRFA----KSPNAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWLDTNYSAGA 340 (572)
T ss_pred hccchhhccCchhHhhc----CCCCccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHhcccccccc
Confidence 22 35677777666 666653322222 1333444444445567788899987543 55555421 11
Q ss_pred -HHHHHHHHHHHHHH-HHhhhccccchHHHHHHHHhhhc
Q 016636 312 -WLIVMANFFVVVHV-IGSYQIYAMPVFDMIETLLVKKL 348 (385)
Q Consensus 312 -~~~~~~~~~~~~~~-~~s~pl~~~p~~~~l~~~~~~~~ 348 (385)
-....+.+.+++.. -..+.-...++..-+..++++--
T Consensus 341 RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyi 379 (572)
T KOG2466|consen 341 RAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYI 379 (572)
T ss_pred chhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceE
Confidence 12223333333333 33555566666666666664443
No 96
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=81.27 E-value=65 Score=33.32 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=33.6
Q ss_pred chhHHHHHHHHhhhhhhhh-hHHHHHHhhCchH----HHHHHHHHHHHHHHHHHHHHH
Q 016636 41 KWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGP----GVAILILSWIITLYTLWQMVE 93 (385)
Q Consensus 41 s~~~~~~~l~~~~iG~GiL-~lP~af~~~G~~~----gii~l~~~~~l~~~s~~~l~~ 93 (385)
|..+-.+..++.++|.|=. -.|+...+-|-.. =+++++++++=..+--..+.+
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQ 96 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQ 96 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 7788999999999999876 5998766656432 233334444444444444444
No 97
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=72.34 E-value=10 Score=37.19 Aligned_cols=102 Identities=16% Similarity=0.200 Sum_probs=66.8
Q ss_pred HHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCC--cccccHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhh
Q 016636 65 MAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPG--KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTG 142 (385)
Q Consensus 65 f~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~--~~~~~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~ 142 (385)
..++|.+.++.+.++-+.+.+....- ....++ ++..=...+.++.+|+ +|+++..+...+.|+-++++.....
T Consensus 228 t~~ag~ia~~~L~~vY~gL~~lGa~s----~~~~~~~~~g~~il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~ 302 (439)
T PRK15433 228 TVWAGLMAGVGLTLLYLALFRLGSDS----ASLVDQSANGAAILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCAC 302 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC----cccccCCCcHhHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556655555555554444444311 111111 1222355678888995 6779999999999999999999999
Q ss_pred ccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCC
Q 016636 143 GKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 180 (385)
Q Consensus 143 ~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~ 180 (385)
++++++..+ .+++.|+++..++.++++..
T Consensus 303 a~~f~~~~~---------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 303 AEFFAQYVP---------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHhhcC---------CcHHHHHHHHHHHHHHHHHh
Confidence 999888743 34566777777777777554
No 98
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=72.27 E-value=80 Score=31.56 Aligned_cols=93 Identities=18% Similarity=0.180 Sum_probs=53.9
Q ss_pred HHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCc-h
Q 016636 106 YHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF-N 184 (385)
Q Consensus 106 y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l-~ 184 (385)
|+-+.++.-| +.| .++|+...+...+....-+-.....+..-++...+-+..... ...+++...+++-.+....+ |
T Consensus 164 ~pl~g~~~~g-~~g-~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~-~~~ii~~~~~i~~~S~~~Gl~k 240 (485)
T PF02028_consen 164 YPLLGDRING-PLG-KIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGL-QIIIIIVITVIFTISAVSGLDK 240 (485)
T ss_dssp HHHHHHHHHS-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHH-HHHHHHHHHHHHHHHHHTTTHH
T ss_pred hhhcCCcccC-cch-hhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHH-HHHHHHHHHHHHHHHHHHhHHH
Confidence 5555555555 356 688888888777776666666777777766776643222111 22222233334445555566 4
Q ss_pred hhHHHHHHHHHHHHHHH
Q 016636 185 AIAGVSLAAAVMSLSYS 201 (385)
Q Consensus 185 ~l~~~s~~~~~~~~~~~ 201 (385)
.+++.|.+.+...+.++
T Consensus 241 GIk~LS~~n~~l~~~ll 257 (485)
T PF02028_consen 241 GIKRLSNINVYLAFALL 257 (485)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47777777777555433
No 99
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=68.52 E-value=1.2e+02 Score=29.51 Aligned_cols=75 Identities=15% Similarity=0.247 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHHHhHHhHhhhc---cCCcchh-hHhhcCCC---chHHHHHHHHHHHHHHHHhhhccccchHHHHHHH
Q 016636 271 RGVVVAYIVVALCYFPVALIGYWM---FGNKVED-NILLSLEK---PTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETL 343 (385)
Q Consensus 271 ~~~~~s~~~~~~~Y~~~g~~gy~~---fG~~~~~-~il~~~~~---~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~ 343 (385)
++-.++......+|...+..|... .++..++ .++..+.+ +..-..+..+...+.++++-.-..-.+.|.+.+.
T Consensus 228 ~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~ 307 (431)
T COG1114 228 KAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKL 307 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444456666677888888777332 2333332 44444421 1122445556666666666666666667777666
Q ss_pred Hh
Q 016636 344 LV 345 (385)
Q Consensus 344 ~~ 345 (385)
.+
T Consensus 308 ~p 309 (431)
T COG1114 308 VP 309 (431)
T ss_pred cc
Confidence 65
No 100
>PRK00701 manganese transport protein MntH; Reviewed
Probab=63.44 E-value=1.2e+02 Score=29.79 Aligned_cols=40 Identities=3% Similarity=0.042 Sum_probs=25.6
Q ss_pred cHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccc
Q 016636 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKS 145 (385)
Q Consensus 105 ~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~ 145 (385)
+..|..++-||+++. +...+...+...+..++.....+.-
T Consensus 95 ~l~~~ir~~~~~~~~-~~~~~~~~l~~~~~~~~e~~G~a~a 134 (439)
T PRK00701 95 DLAQACRDRYPRPVV-WFLWIQAELAIMATDLAEVIGAAIA 134 (439)
T ss_pred CHHHHHHHHCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999997655 5555555555555555555444433
No 101
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=56.07 E-value=13 Score=23.61 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=23.6
Q ss_pred hhhhHHHHHHHHHHHhHHhHhhhccCCcch
Q 016636 271 RGVVVAYIVVALCYFPVALIGYWMFGNKVE 300 (385)
Q Consensus 271 ~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~ 300 (385)
.+..+++.+.+++..+.|...|.+||...+
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppSk 35 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPSK 35 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCccc
Confidence 456677788888888888888999997644
No 102
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=55.41 E-value=2.5e+02 Score=28.79 Aligned_cols=89 Identities=16% Similarity=0.115 Sum_probs=53.4
Q ss_pred CchhHHHHHHHHhhhhhhhh-hHHHH-HHhhCc---hHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 40 AKWWYSAFHNVTAMVGAGVL-SLPYA-MAQLGW---GPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 40 ~s~~~~~~~l~~~~iG~GiL-~lP~a-f~~~G~---~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
.+..+..+..++..++.|=+ -.||- ++..|+ ++=++++++.|+=-.|.=..+.+-++ .+.. --+..++-..-
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r-~g~~--gvw~ri~P~l~ 158 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHR-QGCI--GVWRRIAPALK 158 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhc-ccch--hHHHHhCHHhc
Confidence 45577888888888888876 78885 555554 34556666666666666666666443 1221 24556666554
Q ss_pred CccccccchhHHHHHHhhh
Q 016636 115 GEKLGLYIVVPQQLIVEVG 133 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g 133 (385)
| .|.-++.++.++..+-
T Consensus 159 G--igy~i~~i~~~~~~yy 175 (629)
T KOG3659|consen 159 G--IGYAICLIAFFVGLYY 175 (629)
T ss_pred C--CchhhhHHHHHHHHHH
Confidence 5 4544555555554443
No 103
>CHL00020 psbN photosystem II protein N
Probab=54.84 E-value=12 Score=23.49 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHhHHhHhhhccCCcch
Q 016636 272 GVVVAYIVVALCYFPVALIGYWMFGNKVE 300 (385)
Q Consensus 272 ~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~ 300 (385)
+..++..+.+++..+.|...|.+||...+
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppSk 32 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPSK 32 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCchh
Confidence 45567777888888888888889997644
No 104
>PRK09950 putative transporter; Provisional
Probab=54.77 E-value=1.6e+02 Score=29.64 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=57.3
Q ss_pred cccHHHHHHHhcCcc----ccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhh
Q 016636 103 FDRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLS 178 (385)
Q Consensus 103 ~~~y~~i~~~~~G~~----~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~ 178 (385)
..+..+..+-++|++ .| .++|+...+...+....-+-.....+..-+....+-+.. ......++....+++-++
T Consensus 166 pl~iss~~~pllG~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~-~~~~~~ii~vi~~if~~S 243 (506)
T PRK09950 166 GLSLSGIIAAITGVKPQGPWG-RLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNN-FTVQAFVILLSGVIFCLS 243 (506)
T ss_pred CCchHHhhHhhcCCCCCCcch-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHHHH
Confidence 346777777777753 45 477777777666665555556666666666665543221 111222333344445555
Q ss_pred CCCCc-hhhHHHHHHHHHHHHHHHhh
Q 016636 179 HLPNF-NAIAGVSLAAAVMSLSYSTI 203 (385)
Q Consensus 179 ~~~~l-~~l~~~s~~~~~~~~~~~~~ 203 (385)
....+ |.+|+.|.+.+...+.+++.
T Consensus 244 ~~~Gl~kGIk~LS~~N~~la~~ll~~ 269 (506)
T PRK09950 244 SYIGIDNGLQRLSKMVGWGAFLFALL 269 (506)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 55565 67788888877765554443
No 105
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=54.16 E-value=16 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=21.9
Q ss_pred hhhHHHHHHHHHHHhHHhHhhhccCCcch
Q 016636 272 GVVVAYIVVALCYFPVALIGYWMFGNKVE 300 (385)
Q Consensus 272 ~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~ 300 (385)
+..++..+.+++-.+.|...|.+||....
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppSk 32 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPSK 32 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCcc
Confidence 34566777778888888899999997544
No 106
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=53.19 E-value=66 Score=25.18 Aligned_cols=27 Identities=11% Similarity=0.218 Sum_probs=17.9
Q ss_pred CCchhHHHHHHHHhhhhhhhhhHHHHH
Q 016636 39 NAKWWYSAFHNVTAMVGAGVLSLPYAM 65 (385)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~GiL~lP~af 65 (385)
|..|...++.+.-..+|+..+.+....
T Consensus 38 k~pwK~I~la~~Lli~G~~li~~g~l~ 64 (115)
T PF05915_consen 38 KIPWKSIALAVFLLIFGTVLIIIGLLL 64 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777766543
No 107
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=50.76 E-value=81 Score=31.66 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=50.5
Q ss_pred HHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCc-h
Q 016636 106 YHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF-N 184 (385)
Q Consensus 106 y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l-~ 184 (385)
|+-+.++.-| ++| ..+|++-++...+....-+-+....+..-++...+-++..+-+. .++.+..+++-.+....+ |
T Consensus 177 ~Pllg~~~~G-~~G-~~IDi~aiiaTl~GiATsLG~ga~qi~~Gl~~l~gip~~~~~q~-~iI~vi~~~~~~S~~sGv~K 253 (537)
T COG1292 177 YPLLGERIKG-PIG-HAVDILAIIATLFGIATSLGLGALQLTAGLSYLFGIPNSFAVQA-IIIAVITALFTISVWSGLDK 253 (537)
T ss_pred hhhhcccccC-ccc-hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCChHHHHH-HHHHHHHHHHHHHHHHhHHH
Confidence 4555555556 367 68888888877776666777777777777777664332211111 122222233444444444 5
Q ss_pred hhHHHHHHHHHHHHH
Q 016636 185 AIAGVSLAAAVMSLS 199 (385)
Q Consensus 185 ~l~~~s~~~~~~~~~ 199 (385)
.+|+.|.+-+.....
T Consensus 254 GIr~LS~~n~~la~~ 268 (537)
T COG1292 254 GIRVLSNINMVLAFL 268 (537)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666654443
No 108
>PLN02680 carbon-monoxide oxygenase
Probab=48.94 E-value=1.3e+02 Score=26.87 Aligned_cols=69 Identities=14% Similarity=0.203 Sum_probs=51.3
Q ss_pred CCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccch
Q 016636 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (385)
Q Consensus 266 ~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 336 (385)
+++.+|.+-+..-...++..++|+.....+-++. ++.+-++-..|.-..+.+++.++-+..+...++|-
T Consensus 75 ~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 75 TKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GIDNFYSLHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 3455688888888888888899987755554433 33333444678888899999999999988888884
No 109
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=47.53 E-value=2.5e+02 Score=28.45 Aligned_cols=47 Identities=11% Similarity=0.057 Sum_probs=36.7
Q ss_pred cHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHH
Q 016636 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 152 (385)
Q Consensus 105 ~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 152 (385)
...++-....|+|.. .......++..+..+++-....++....+.+.
T Consensus 326 p~~~i~~~~lg~k~~-v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGA-VFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred hHHHHHHHhcCCCce-EehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 678888899998866 77777777888888888888877776666543
No 110
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=46.78 E-value=2.8e+02 Score=26.81 Aligned_cols=146 Identities=14% Similarity=0.158 Sum_probs=86.1
Q ss_pred ccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHH-HHHHHHHHHcchhc-CCcccccHHHHHHH
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIIT-LYTLWQMVEMHEMV-PGKRFDRYHELGQH 112 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~-~~s~~~l~~~~~~~-~~~~~~~y~~i~~~ 112 (385)
..|+.+.+-..+....+=+++.- +.=|.+..+.|. |++++...-+.+ +++.-.+.+-.... .+.+..+..|+.++
T Consensus 37 gnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~Gl--gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~ 114 (473)
T COG4145 37 GNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGL--GWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFA 114 (473)
T ss_pred ccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhch--HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHH
Confidence 45666666666666666666643 466777667675 455554444443 34455555422111 12224578888888
Q ss_pred hcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHH
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (385)
=|-.+.-.+...+...+...+...+..+..+..++..... ++..-.++++..+......-.++.....-.+
T Consensus 115 RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gi---------dY~tgL~ifa~~V~iYt~fGGFRAvvltD~I 185 (473)
T COG4145 115 RYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGI---------DYTTGLLIFAVSVAIYTAFGGFRAVVLTDTI 185 (473)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCC---------CchhhHHHHHHHHHHHHhhcceeeeehHHHH
Confidence 7744444466666666777777777888888777766433 3445566666666666666555554444333
No 111
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=45.23 E-value=70 Score=26.45 Aligned_cols=69 Identities=13% Similarity=0.277 Sum_probs=52.2
Q ss_pred CCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccch
Q 016636 266 KGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (385)
Q Consensus 266 ~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 336 (385)
+++.+|.+-+..-...++..++|+.....+-++.. +.+-++-..|.-.+..+++.++-+..+...++|.
T Consensus 43 ~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~--~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 43 SKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKN--IPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccC--CCccccHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 33455788888888888888888888777755432 2222344578888999999999999999999996
No 112
>PRK09928 choline transport protein BetT; Provisional
Probab=44.89 E-value=95 Score=32.35 Aligned_cols=164 Identities=12% Similarity=0.036 Sum_probs=76.0
Q ss_pred CCCchhHHHHHHHHhhhhhhhhhHH----HH-HHh--hCc---h----HHHHHHHHHHHHHHHHHHHHHHcch---hcCC
Q 016636 38 RNAKWWYSAFHNVTAMVGAGVLSLP----YA-MAQ--LGW---G----PGVAILILSWIITLYTLWQMVEMHE---MVPG 100 (385)
Q Consensus 38 ~~~s~~~~~~~l~~~~iG~GiL~lP----~a-f~~--~G~---~----~gii~l~~~~~l~~~s~~~l~~~~~---~~~~ 100 (385)
+.-|.++=...+..+-+|+|++.-- .. +.. .|- . .+...-++=+-+..|+.+.+.-..- .+..
T Consensus 91 PefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~ 170 (679)
T PRK09928 91 PEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRY 170 (679)
T ss_pred CCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcC
Confidence 3344455556888889999987443 22 111 111 0 1222223333344444444433211 1111
Q ss_pred cccccHHHHHHHhcCc----cccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHH
Q 016636 101 KRFDRYHELGQHAFGE----KLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFV 176 (385)
Q Consensus 101 ~~~~~y~~i~~~~~G~----~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~p 176 (385)
+...+..+..+-++|+ ++| .++|+..++...+....-+-+....+..-+....+-+... .....++++..+++-
T Consensus 171 ~~pl~issal~pllG~ri~G~~G-~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~~-~~q~~ii~vi~~i~~ 248 (679)
T PRK09928 171 NLPLTIRSALYPIFGKRINGPIG-HSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPESL-AAQAALIALSVIIAT 248 (679)
T ss_pred CCCCchhHhhhhhcCCCCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHH
Confidence 1123555555555553 356 4667666665554444444444444555555544322211 112222222333344
Q ss_pred hhCCCCc-hhhHHHHHHHHHHHHHHHhh
Q 016636 177 LSHLPNF-NAIAGVSLAAAVMSLSYSTI 203 (385)
Q Consensus 177 l~~~~~l-~~l~~~s~~~~~~~~~~~~~ 203 (385)
++....+ |.+|+.|.+.+...+.+++.
T Consensus 249 ~S~~sGl~KGIk~LS~lN~~La~~Lllf 276 (679)
T PRK09928 249 ISVTSGVNKGIRVLSELNVLLALGLILF 276 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 4444444 66777777777765554443
No 113
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=44.64 E-value=3.2e+02 Score=27.52 Aligned_cols=95 Identities=15% Similarity=0.051 Sum_probs=50.8
Q ss_pred cHHHHHHHhcCcc-----ccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhC
Q 016636 105 RYHELGQHAFGEK-----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSH 179 (385)
Q Consensus 105 ~y~~i~~~~~G~~-----~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~ 179 (385)
+..+..+-++|++ .| .++|+...+...+....-+-+....+..-++...+-+.. ......++....+++-.+.
T Consensus 170 ~iss~~~pllG~~~~~g~~G-~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~-~~~~~~ii~~i~~if~~S~ 247 (504)
T PRK03356 170 RPSSTLVPLVGEKHAKGLFG-TIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHT-LQLDAIIITCWIILNAICV 247 (504)
T ss_pred cHHHHHHHHcCCCcccCchH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCc-hHHHHHHHHHHHHHHHHHH
Confidence 5677777777732 45 467777766666555555555566666666665543222 1112222222333344444
Q ss_pred CCCc-hhhHHHHHHHHHHHHHHH
Q 016636 180 LPNF-NAIAGVSLAAAVMSLSYS 201 (385)
Q Consensus 180 ~~~l-~~l~~~s~~~~~~~~~~~ 201 (385)
...+ |.+|+.|.+.+...+.++
T Consensus 248 ~~Gl~kGIk~LS~~N~~la~~ll 270 (504)
T PRK03356 248 ACGLQKGVRIASDVRSYLSFLML 270 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 556777777766555433
No 114
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=44.25 E-value=79 Score=32.23 Aligned_cols=240 Identities=14% Similarity=0.102 Sum_probs=110.9
Q ss_pred cccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcc-hhcCCcccccHHHHHHH
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMH-EMVPGKRFDRYHELGQH 112 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~-~~~~~~~~~~y~~i~~~ 112 (385)
...|+..++-....+..+.+|++- +.+|....+.|.-.. ..... ......++.... ...-+.+..+-+|..++
T Consensus 42 l~gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~--~~~~~---~l~~~~~~~~~f~Pvf~~~~v~~~~eYl~~ 116 (585)
T KOG2349|consen 42 LGGRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYW--FFEWN---ALLSVLLLGWIFIPVFYRLGVTTMYEYLEK 116 (585)
T ss_pred hcCCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHH--HHHHH---HHHHHHhhheEEEEEEEecCeeehhHHHHH
Confidence 356778888888888888888764 688887777665321 11111 122222222221 01112234577788888
Q ss_pred hcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHH
Q 016636 113 AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (385)
Q Consensus 113 ~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (385)
-||++ .|....+...+..+ +.+-+--+.+.+.-+.. ..++...-.++..++..-....-.++..-|+=.+
T Consensus 117 Rf~~~-~r~l~~l~f~l~~~-----~~l~v~~y~pal~~~qv----tg~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~ 186 (585)
T KOG2349|consen 117 RFGGR-VRYLATLSFILMIF-----LYLPVDMYAPALAINQV----TGINLYLIVVILGLICVFYTALGGLKAVIWTDVV 186 (585)
T ss_pred Hhccc-chhhHHHHHHHHHH-----hheeeeEeehHHHHHHH----hccCceeehHHHHHHHHHHHHhcCeeEEEEhhHH
Confidence 88865 43333333332222 22222222222222211 1122222233334444444455566666666666
Q ss_pred HHHHHHHHHhheeeeeeee-c-CC-------C-C----c-ccccccccccchhhhHHHHHhhHHhhccCceeehhccccC
Q 016636 193 AAVMSLSYSTIAWSASVRK-G-VQ-------P-D----V-AYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI 257 (385)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~-~-~~-------~-~----~-~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m 257 (385)
..+.++.-...+.+....+ + .. + + . +...+.......|.-++.....-...|..+++. +++-|
T Consensus 187 Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~--VQR~l 264 (585)
T KOG2349|consen 187 QTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLI--VQRYL 264 (585)
T ss_pred HHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHH--HhHHh
Confidence 6655444333333332211 1 00 0 0 0 011111112223333444455555566666664 45554
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHH---hHHhHhhhcc
Q 016636 258 PSTPEKPSKGPMWRGVVVAYIVVALCYF---PVALIGYWMF 295 (385)
Q Consensus 258 ~~~~~~p~~~~~~~~~~~s~~~~~~~Y~---~~g~~gy~~f 295 (385)
.-|+.++.+++........++... ..|+..|..|
T Consensus 265 ----sl~slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y 301 (585)
T KOG2349|consen 265 ----SLPSLKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALY 301 (585)
T ss_pred ----ccccHHHhhhhhhhhhhHHHHHHHhhcccceeEeeec
Confidence 335555566776655544444444 4455555555
No 115
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=39.39 E-value=4.3e+02 Score=26.92 Aligned_cols=18 Identities=11% Similarity=0.576 Sum_probs=12.7
Q ss_pred HHHHHhHHhHhhhccCCc
Q 016636 281 ALCYFPVALIGYWMFGNK 298 (385)
Q Consensus 281 ~~~Y~~~g~~gy~~fG~~ 298 (385)
+.+.+.+|+..|..||.+
T Consensus 536 ~~~w~~~g~~~y~~yg~~ 553 (557)
T TIGR00906 536 FAIWMAIGFLIYFLYGIR 553 (557)
T ss_pred HHHHHHHHHHHHhhhhhh
Confidence 345566788888888864
No 116
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=38.48 E-value=4e+02 Score=26.29 Aligned_cols=151 Identities=14% Similarity=0.142 Sum_probs=76.1
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhh-hHHHHHHhhCchHHHHHHHHH---HHHHHHHHHHHHHcchhcCCcccccH----
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVAILILS---WIITLYTLWQMVEMHEMVPGKRFDRY---- 106 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL-~lP~af~~~G~~~gii~l~~~---~~l~~~s~~~l~~~~~~~~~~~~~~y---- 106 (385)
++++..|.+|+....+.+.+|+|=+ ...-|.+..|-. ++..+=+. +..+-|.=..|....+..++++ .|
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPG-AvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G--~~~GGP 134 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPG-AVFWMWIVALFGMATKFAESTLAQKYRVKDKDG--EYRGGP 134 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCC--CCcCCh
Confidence 3567789999999999999999865 777788777753 34433333 3334444444444433233222 22
Q ss_pred HHHHHHhcCccccccchhHHHHHHhhhhhhhhh-hhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchh
Q 016636 107 HELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYM-VTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNA 185 (385)
Q Consensus 107 ~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~-i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~ 185 (385)
..+.++-+|.||--.+.. ++..++|- +.-.-.-+.+.+...+. ..++ .+..-+.+.++.-+.....+++
T Consensus 135 ~yYi~kGl~~r~l~v~FA-------~~li~afg~i~n~vQ~NsIa~a~~~a--f~~~-~~~~gi~la~l~~~VI~GGi~r 204 (452)
T COG1115 135 AYYIEKGLGMRWLAVLFA-------FALIAAFGFIGNGVQSNSIASALANA--FGIP-PLVTGIVLALLVALVIFGGIKR 204 (452)
T ss_pred HHHHHhhcCCcHHHHHHH-------HHHHHHHHhhcchhhHHHHHHHHHHh--cCCc-HHHHHHHHHHHHHHHHHcchHH
Confidence 234455565432211111 12222222 11111112222222111 1122 2334444555555566678888
Q ss_pred hHHHHHHHHHHHH
Q 016636 186 IAGVSLAAAVMSL 198 (385)
Q Consensus 186 l~~~s~~~~~~~~ 198 (385)
+..++..-+.++.
T Consensus 205 Ia~v~~~vVPfMA 217 (452)
T COG1115 205 IAKVSSKVVPFMA 217 (452)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877776443
No 117
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=35.18 E-value=4.3e+02 Score=25.62 Aligned_cols=38 Identities=3% Similarity=0.005 Sum_probs=21.7
Q ss_pred cHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhc
Q 016636 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGG 143 (385)
Q Consensus 105 ~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~ 143 (385)
+..|..++-+++ +.++...+...+...+...+.....+
T Consensus 65 ~l~~~~r~~~~~-~~~~~~~~~~~l~ii~~~~~e~~G~a 102 (390)
T TIGR01197 65 DLAEVCREHYPK-VPRITLWILAELAIIATDMAEVIGTA 102 (390)
T ss_pred CHHHHHHHHCCC-chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999986 44455544444444444333333333
No 118
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=34.71 E-value=1.4e+02 Score=29.47 Aligned_cols=95 Identities=14% Similarity=0.083 Sum_probs=47.8
Q ss_pred cccHHHHHHHhcCcc----ccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhh
Q 016636 103 FDRYHELGQHAFGEK----LGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLS 178 (385)
Q Consensus 103 ~~~y~~i~~~~~G~~----~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~ 178 (385)
..+..+..+-++|++ .| .++|+...+...+....-+-.....+..-+....+-+.. ......++....+++-.+
T Consensus 119 ~~~iss~~~pllG~~~~g~~g-~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~~~-~~~~~~ii~~i~~~f~~S 196 (453)
T TIGR00842 119 PLRLSSALVPLLGERVNGPIG-KAIDIMALVATLFGVATSLGLGAPQINAGLSALFGIPDS-FWLQALIILCVTALACIS 196 (453)
T ss_pred CCchhhhhhcccCCcccCccH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHHHHHHHH
Confidence 346777777777643 44 466666666555555555555555555555555433221 111112222222233444
Q ss_pred CCCCc-hhhHHHHHHHHHHHHH
Q 016636 179 HLPNF-NAIAGVSLAAAVMSLS 199 (385)
Q Consensus 179 ~~~~l-~~l~~~s~~~~~~~~~ 199 (385)
....+ |.+|+.|.+.+...+.
T Consensus 197 ~~~Gl~kGIk~LS~~n~~l~~~ 218 (453)
T TIGR00842 197 VASGVGKGIKILSNINMALAFL 218 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 5566666666664444
No 119
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=30.62 E-value=1.1e+02 Score=25.12 Aligned_cols=67 Identities=18% Similarity=0.189 Sum_probs=49.6
Q ss_pred CCchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccch
Q 016636 268 PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (385)
Q Consensus 268 ~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 336 (385)
+.+|.+-+.+-...++..++|+.....+-++.. .-.-++-..|.-.++.+++.++.+..+....+|-
T Consensus 38 ~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~--~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 38 EVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVG--IPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344778888888888888899877666655443 2223334578888899999999999988888885
No 120
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=27.50 E-value=1.7e+02 Score=23.85 Aligned_cols=67 Identities=9% Similarity=0.112 Sum_probs=49.8
Q ss_pred CCchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccch
Q 016636 268 PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (385)
Q Consensus 268 ~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 336 (385)
+..|.+-...-...++-.++|+..-..+-++. ++-.=++...|.-....+++.++.+..+...++|-
T Consensus 38 ~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~~~hf~SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 38 RSTKILHGLLHIMALVISLVGLVAVFDYHQAN--GYPDMYSLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CCCccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34466888888888888888888877665543 22222344578888899999999999999998885
No 121
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=27.31 E-value=6.1e+02 Score=25.01 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=34.0
Q ss_pred cHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHH
Q 016636 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 152 (385)
Q Consensus 105 ~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 152 (385)
.+.++.+..+|.+++..+......+..+++..+.+...++.+..+.++
T Consensus 290 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ard 337 (482)
T TIGR00907 290 PIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRD 337 (482)
T ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 577888888887555455666666777777778887777777766544
No 122
>TIGR00909 2A0306 amino acid transporter.
Probab=26.91 E-value=3.9e+02 Score=25.84 Aligned_cols=47 Identities=11% Similarity=0.028 Sum_probs=35.0
Q ss_pred cHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHH
Q 016636 105 RYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 152 (385)
Q Consensus 105 ~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 152 (385)
...++.++..|+. +..+..+...+..+++..+.....++.+..+.++
T Consensus 265 ~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGI-GGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4667777766654 4467888888888888888888888887776544
No 123
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=25.78 E-value=3.3e+02 Score=27.23 Aligned_cols=163 Identities=13% Similarity=0.136 Sum_probs=79.3
Q ss_pred CccccccchhHHHHHHhhhhhhhhh-hhhccchHHHHHHhhcCCCccccch-hhhHHHHHHHHHhhCCCC-chhhHHHHH
Q 016636 115 GEKLGLYIVVPQQLIVEVGVCIVYM-VTGGKSLHKVHELLCKEPCKEIKLS-YFIMIFASVHFVLSHLPN-FNAIAGVSL 191 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g~~~~y~-i~~~~~l~~l~~~~~~~~~~~~~~~-~~~~i~~~i~~pl~~~~~-l~~l~~~s~ 191 (385)
|.++|-+++.+...+.+.+..++-- +..+.-+..+++.+.+ ..|- +...+...++.|=-++++ -+.+...+.
T Consensus 339 G~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~Pkyin-----IrRG~~~~a~ia~a~~PWnll~SSs~F~t~Lss 413 (572)
T KOG2466|consen 339 GARAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYIN-----IRRGALICAIIAWAICPWNLLSSSSKFLTALSS 413 (572)
T ss_pred ccchhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceEE-----ecccHHHHHHHHHHhCchHHhccccHHHHHHHH
Confidence 4456767777777777777655433 3344444555555432 2222 233444556667666654 334455555
Q ss_pred HHHHHHHHHHhheeeeeee-ecCCC-Cccccccc-----ccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCC
Q 016636 192 AAAVMSLSYSTIAWSASVR-KGVQP-DVAYGYKA-----KTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (385)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p 264 (385)
.+++..=+.-+++.-+.+. ++... +..+..++ .....||.. +..|-.++.+++|-+..|..++-+.|
T Consensus 414 ysvfLspiagViiaDyF~iRk~~~~i~~~y~~~~g~yY~~~~G~NwRA------~vA~vcG~~P~lpG~a~~V~~~~~v~ 487 (572)
T KOG2466|consen 414 YSVFLSPIAGVIIADYFLIRKGYYKITHLYSLSKGSYYYFKKGINWRA------FVAYVCGMAPNLPGFAGSVGADIKVP 487 (572)
T ss_pred HHHHHhhccceEeehhheeecceeeeeeeeecCCCceeeeecCccHHH------HHHHHhccccCCcchhhhcCcccccc
Confidence 5555433332222222222 22211 00011000 011224433 45677788899999999984322333
Q ss_pred CCC--CCchhhhHHHHHHHHHHHhHH
Q 016636 265 SKG--PMWRGVVVAYIVVALCYFPVA 288 (385)
Q Consensus 265 ~~~--~~~~~~~~s~~~~~~~Y~~~g 288 (385)
+-. -+......+..+++..|..+.
T Consensus 488 ~G~~~~yy~~yf~sf~isf~vYwiLc 513 (572)
T KOG2466|consen 488 DGAVKLYYLDYFFSFLISFLVYWILC 513 (572)
T ss_pred cceEEEEechHHHHHHHHHHHHHHHH
Confidence 321 111233466666777776543
No 124
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=24.95 E-value=2.1e+02 Score=24.42 Aligned_cols=67 Identities=10% Similarity=0.227 Sum_probs=51.5
Q ss_pred CCchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccch
Q 016636 268 PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (385)
Q Consensus 268 ~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 336 (385)
+.+|.+-...-...++..++|+.....+-++. .+-+.++-..|.-..+..++.++-+..+....+|.
T Consensus 68 ~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 68 LPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34578888888888888899988888776554 33333444578888899999999999998888884
No 125
>PF04911 ATP-synt_J: ATP synthase j chain; InterPro: IPR006995 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit J found in the F0 complex of F-ATPases from fungal mitochondria. This subunit does not appear to display sequence similarity with subunits of F-ATPases found in other organisms []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o)
Probab=24.48 E-value=31 Score=22.85 Aligned_cols=40 Identities=15% Similarity=0.261 Sum_probs=30.2
Q ss_pred hhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCC
Q 016636 229 TVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGP 268 (385)
Q Consensus 229 ~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~ 268 (385)
..+.++.+-.++.|...-..+...-..|-+||||||.-.+
T Consensus 9 P~wPFf~ag~iv~ygv~k~~~a~~ns~E~~NDPRNP~~~~ 48 (54)
T PF04911_consen 9 PMWPFFAAGAIVYYGVNKAQNAMMNSDEFKNDPRNPRAAK 48 (54)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcCHHHhcCCCChhhhc
Confidence 3456777777777777777777777889999999997643
No 126
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.85 E-value=1.8e+02 Score=25.55 Aligned_cols=68 Identities=13% Similarity=0.170 Sum_probs=50.3
Q ss_pred CchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccch
Q 016636 269 MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPV 336 (385)
Q Consensus 269 ~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~ 336 (385)
..|.+-...-...++..++|+.....+-++.++.+-.-++...|.-....+++.++.+..+...++|-
T Consensus 56 ~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 56 RLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34778888888888888888777666655554344333455678888899999999999988888874
Done!