Query 016636
Match_columns 385
No_of_seqs 128 out of 1431
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 16:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.6 4.3E-15 1.5E-19 144.8 15.6 295 35-345 5-306 (445)
2 3gia_A Uncharacterized protein 99.5 4.7E-13 1.6E-17 130.3 16.1 292 36-346 4-305 (444)
3 4djk_A Probable glutamate/gamm 99.2 6.1E-10 2.1E-14 110.1 19.0 295 34-345 7-321 (511)
4 2jln_A MHP1; hydantoin, transp 98.2 0.00011 3.7E-09 72.2 19.1 293 36-345 23-331 (501)
5 3dh4_A Sodium/glucose cotransp 96.3 0.15 5.1E-06 50.1 17.0 151 35-199 17-169 (530)
6 2a65_A Leutaa, Na(+):neurotran 95.7 1.1 3.7E-05 43.7 19.5 32 39-70 8-40 (519)
7 2xq2_A Sodium/glucose cotransp 94.5 1.1 3.8E-05 44.5 16.1 150 36-199 47-198 (593)
8 4ain_A Glycine betaine transpo 46.9 24 0.00082 34.2 5.4 117 37-155 93-230 (539)
9 2wsw_A BCCT family betaine/car 45.3 90 0.0031 30.0 9.0 93 105-200 180-274 (509)
10 3l1l_A Arginine/agmatine antip 10.0 9.2E+02 0.031 21.6 13.6 48 104-152 260-307 (445)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.62 E-value=4.3e-15 Score=144.75 Aligned_cols=295 Identities=15% Similarity=0.092 Sum_probs=186.7
Q ss_pred cccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
+++|+.|.++.+...+++++|+|++.+|....+.|. .+++.+++.+++.......+.|...+.|... +..+..++.+
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~ 81 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF 81 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence 457899999999999999999999999998888886 4788889999999999999999887777755 7888999999
Q ss_pred CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 016636 115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA 194 (385)
Q Consensus 115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~ 194 (385)
||.+| ++..+..++.......++....++++....+... ..+....+.+++. +++-....+..+...+++.+..
T Consensus 82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~in~~g~~~~~~~~~~~~ 155 (445)
T 3l1l_A 82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCVVVL-WIFVLLNIVGPKMITRVQAVAT 155 (445)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG----SHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHH
T ss_pred CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc----ccHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHH
Confidence 99888 7777777776666666666666666554433211 0111111111111 1222222235555666555544
Q ss_pred HHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhh
Q 016636 195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274 (385)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~ 274 (385)
...++..+++++..+.....+.....+. +....++.++..++...+|+|.|++......+|+ |||+| +.+|++.
T Consensus 156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~ 229 (445)
T 3l1l_A 156 VLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATI 229 (445)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHH
Confidence 4333322222222221111111111111 1111246678899999999999999999999999 77865 6889999
Q ss_pred HHHHHHHHHHHhHHhHhhhccCCcch----h---hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHh
Q 016636 275 VAYIVVALCYFPVALIGYWMFGNKVE----D---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (385)
Q Consensus 275 ~s~~~~~~~Y~~~g~~gy~~fG~~~~----~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~ 345 (385)
.+..+..++|++..+......+.+.. + .+..... +++...+..+...+..+.+.--..+...+.+..+-.
T Consensus 230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~ 306 (445)
T 3l1l_A 230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998877776654321 1 1122211 133445556666666666666666666666666543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.48 E-value=4.7e-13 Score=130.26 Aligned_cols=292 Identities=13% Similarity=0.102 Sum_probs=182.2
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhhhHHH-HHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPY-AMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~-af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
++|+.|.++.....+++++|+|++..|. +....|. .+++.+++.+++.......+.|...+.|... ...+..++.+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~G--g~y~~~~~~~ 80 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNA--GPIAFIHKAI 80 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT--THHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC--cHHHhHHHHh
Confidence 5788999999999999999999998774 4556676 5788888999999999999999887777755 7889999999
Q ss_pred Cccc-cccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 115 GEKL-GLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 115 G~~~-~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
|+++ + ....+..++.....+..+....++++..+++. ....+.... ..+...+++-....+..+...+++...
T Consensus 81 G~~~~~-g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~in~~g~~~~~~~~~~~ 154 (444)
T 3gia_A 81 GDNIIT-GALSILLWMSYVISIALFAKGFAGYFLPLINA----PINTFNIAI-TEIGIVAFFTALNFFGSKAVGRAEFFI 154 (444)
T ss_dssp CSSHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHH-HHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred CcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCchHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 9863 2 12334445555555666666666666554322 111111111 111111122222223555555555544
Q ss_pred HHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhh
Q 016636 194 AVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGV 273 (385)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~ 273 (385)
....+...+++++..+.....+ ++.+...+.++.+++.++...+|+|.|++......+|+ |||+| +.+|++
T Consensus 155 ~~~~i~~~~~~ii~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~----k~P~r-~ip~ai 225 (444)
T 3gia_A 155 VLVKLLILGLFIFAGLITIHPS----YVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHI----ENPKK-NVPRAI 225 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHCCGG----GTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB----SSHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcChh----hcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc----cCccc-chhHHH
Confidence 4433322222222222111111 11112234567788999999999999999999999999 77865 688999
Q ss_pred hHHHHHHHHHHHhHHhHhhhccCCcch----hh----HhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHh
Q 016636 274 VVAYIVVALCYFPVALIGYWMFGNKVE----DN----ILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV 345 (385)
Q Consensus 274 ~~s~~~~~~~Y~~~g~~gy~~fG~~~~----~~----il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~ 345 (385)
..+..++.++|+...+......+.+.- ++ +....- +++...+..+...+..+.+.--.++...+.+..+-.
T Consensus 226 ~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 304 (444)
T 3gia_A 226 FISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFL-GNLGFLLISIGALFSISSAMNATIYGGANVAYSLAK 304 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988776666543211 11 111111 133344555666666666666666666666666644
Q ss_pred h
Q 016636 346 K 346 (385)
Q Consensus 346 ~ 346 (385)
+
T Consensus 305 d 305 (444)
T 3gia_A 305 D 305 (444)
T ss_dssp H
T ss_pred C
Confidence 3
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.20 E-value=6.1e-10 Score=110.14 Aligned_cols=295 Identities=9% Similarity=0.021 Sum_probs=160.3
Q ss_pred ccccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHH-HHHHHHHHcch--hcCCcccccHHHHH
Q 016636 34 ITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITL-YTLWQMVEMHE--MVPGKRFDRYHELG 110 (385)
Q Consensus 34 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~-~s~~~l~~~~~--~~~~~~~~~y~~i~ 110 (385)
++.+|+.|.++.+...++.++| +..+|. ....|.. +++..++.+++.. .....+.|... ..| .. .....+
T Consensus 7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~G--G~y~~~ 79 (511)
T 4djk_A 7 TGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGWE-EG--GVFAWV 79 (511)
T ss_dssp -----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHH
T ss_pred CccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccCC-CC--ChhhhH
Confidence 3567899999999999999986 567775 4566653 3334444344333 37788888877 788 66 888999
Q ss_pred HHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHH--HHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHH
Q 016636 111 QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVH--ELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAG 188 (385)
Q Consensus 111 ~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~--~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~ 188 (385)
++.+|+++| ++..+..++.......++....++.+..++ +... ...+....+.+++.++...+ -.+..+...+
T Consensus 80 ~~~~g~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~i-n~~g~~~~~~ 154 (511)
T 4djk_A 80 SNTLGPRWG-FAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALN---EDPITKTIAALIILWALALT-QFGGTKYTAR 154 (511)
T ss_dssp HHHHCHHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGT---SCSSHHHHHHHHHHHHHHHH-HHTCSSSHHH
T ss_pred HhhcCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc---cCcHHHHHHHHHHHHHHHHH-HHhChHHHHH
Confidence 999999888 777777777666555555555555543221 1110 11122222222222222122 2234444444
Q ss_pred HHHHHHHH----HHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCC
Q 016636 189 VSLAAAVM----SLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKP 264 (385)
Q Consensus 189 ~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p 264 (385)
++.+.... .++.+++........+...+.........+.....+...++...+|+|.|.+......+|+ |||
T Consensus 155 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~----k~P 230 (511)
T 4djk_A 155 IAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEM----SNP 230 (511)
T ss_dssp HTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSS----SCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhc----cCc
Confidence 44433221 1111111100001111110000011111111111234456778899999999999999999 788
Q ss_pred CCCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcchh----------hHhhcCC-CchHHHHHHHHHHHHHHHHhhhccc
Q 016636 265 SKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVED----------NILLSLE-KPTWLIVMANFFVVVHVIGSYQIYA 333 (385)
Q Consensus 265 ~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~----------~il~~~~-~~~~~~~~~~~~~~~~~~~s~pl~~ 333 (385)
+| +++|++..++.+..++|++..+......+++... .+..+.. ...+...+..+...+..+.+.--.+
T Consensus 231 ~k-~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (511)
T 4djk_A 231 GR-DYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWI 309 (511)
T ss_dssp TT-THHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 7899999999999999999988877776654221 1122222 0245556666666666666655555
Q ss_pred cchHHHHHHHHh
Q 016636 334 MPVFDMIETLLV 345 (385)
Q Consensus 334 ~p~~~~l~~~~~ 345 (385)
...-+.+..+-.
T Consensus 310 ~~~sR~l~a~ar 321 (511)
T 4djk_A 310 VGPSRGMYVTAQ 321 (511)
T ss_dssp THHHHHTCHHHH
T ss_pred HHHHHHHHHHcc
Confidence 655555555543
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.17 E-value=0.00011 Score=72.18 Aligned_cols=293 Identities=10% Similarity=0.040 Sum_probs=155.2
Q ss_pred ccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCc--hHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGW--GPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~--~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
++|+.++++-...-++..++.+...+...+.. |. ..+++..++..++......+......+ .+ .++..+.+..
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~-GLs~~~a~lai~lG~li~~~~~~l~~~~G~~-~G---l~~~v~~R~~ 97 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTS-SFQVWQVIVAIAAGCTIAVILLFFTQSAAIR-WG---INFTVAARMP 97 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTT-TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HC---CCHHHHTTTT
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCHHHHHHHHHHHHHHHHHHHHHHhHHHhh-cC---CChhhhhHhh
Confidence 34567888877777777777777777655544 54 444544444444444444444443321 22 3799999999
Q ss_pred cCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 114 FGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
||++ |..+..+...+.++|-........++.+..++....+.+ +.....+++.++.++..+ ...+.++++..+.
T Consensus 98 FG~~-Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~----~~~v~~~i~~~l~~~~~~-~G~~~i~~~~~~~ 171 (501)
T 2jln_A 98 FGIR-GSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFT----NLPLWIVIFGAIQVVTTF-YGITFIRWMNVFA 171 (501)
T ss_dssp SCTT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred cchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc----hHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHH
Confidence 9975 546777888787777777777778888888776543211 123445555666666664 4677777777776
Q ss_pred HHHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhH-HhhccCceeehhccccCCCCCCCCCC---CC-
Q 016636 194 AVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDV-AFAYAGHNVVLEIQATIPSTPEKPSK---GP- 268 (385)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~fsf~~~~~~~~i~~~m~~~~~~p~~---~~- 268 (385)
....++.++...+..+.+.... ...... ..+....+.+..++... .+.-....+.+...+.+ |++++ ++
T Consensus 172 ~p~~~i~~i~~~~~~l~~~g~~-~~~~~~-~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~----~~~~~~~~~~~ 245 (501)
T 2jln_A 172 SPVLLAMGVYMVYLMLDGADVS-LGEVMS-MGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKEC----KVDPNASREGQ 245 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCC-HHHHTT-CCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTB----CCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCc-chhhhc-cCCccchHHHHHHHHHHHHHHHHHHhccCcccccC----CCCccccccch
Confidence 6544433332222222211110 000000 00011223344444332 22223336778888888 33332 01
Q ss_pred ------CchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhc-CCCchHHHHHHH-HHHHHHHHHhhhc-cccchHHH
Q 016636 269 ------MWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLS-LEKPTWLIVMAN-FFVVVHVIGSYQI-YAMPVFDM 339 (385)
Q Consensus 269 ------~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~-~~~~~~~~~~~~-~~~~~~~~~s~pl-~~~p~~~~ 339 (385)
......++..+..++..++|+......+......++.. ++.+.+...+.- +...+..+.+--. .+++....
T Consensus 246 ~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~ 325 (501)
T 2jln_A 246 TKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYT 325 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHH
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 11223344555555555556544333343333444444 322222233444 5555555454443 78888888
Q ss_pred HHHHHh
Q 016636 340 IETLLV 345 (385)
Q Consensus 340 l~~~~~ 345 (385)
+.+.+.
T Consensus 326 l~~~~~ 331 (501)
T 2jln_A 326 LCSTFP 331 (501)
T ss_dssp HHHHST
T ss_pred HHHhCc
Confidence 888753
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=96.29 E-value=0.15 Score=50.14 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=80.1
Q ss_pred cccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHh
Q 016636 35 TSSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHA 113 (385)
Q Consensus 35 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~ 113 (385)
-..|+.+++...+.+..+.+++.. +.+|......|+......+.. ++........+..... +. +..|.+|+.++-
T Consensus 17 laGR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~-~~--~~~T~~e~l~~R 92 (530)
T 3dh4_A 17 XAGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFI-EK--GIYTIPEFVEKR 92 (530)
T ss_dssp CCCSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHH-HT--TCCSHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHH-Hc--CCccHHHHHHHH
Confidence 356889999999999998888855 699988888887543211111 1111112222222222 12 246999999999
Q ss_pred cCccccccchhHHHHH-HhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHH
Q 016636 114 FGEKLGLYIVVPQQLI-VEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192 (385)
Q Consensus 114 ~G~~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~ 192 (385)
||++.. .+..+...+ +.+..+.+.+...+..++.+ . .++....+++..+++.-.+..-.++...+...+
T Consensus 93 fg~~~~-~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~----~-----Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~i 162 (530)
T 3dh4_A 93 FNKKLK-TILAVFWISLYIFVNLTSVLYLGGLALETI----L-----GIPLMYSILGLALFALVYSIYGGLSAVVWTDVI 162 (530)
T ss_dssp TCHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHH----T-----TCCHHHHHHHHHHHHHHTTC------CCSHHHH
T ss_pred cCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-----CCCHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 997643 444433322 22222222222233333322 2 234444455556666667777788888888887
Q ss_pred HHHHHHH
Q 016636 193 AAVMSLS 199 (385)
Q Consensus 193 ~~~~~~~ 199 (385)
..+..++
T Consensus 163 Q~~im~~ 169 (530)
T 3dh4_A 163 QVFFLVL 169 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7775544
No 6
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=95.66 E-value=1.1 Score=43.65 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=26.4
Q ss_pred CCchhHHHHHHHHhhhhhh-hhhHHHHHHhhCc
Q 016636 39 NAKWWYSAFHNVTAMVGAG-VLSLPYAMAQLGW 70 (385)
Q Consensus 39 ~~s~~~~~~~l~~~~iG~G-iL~lP~af~~~G~ 70 (385)
=.|..+-++..+++.+|.| +--.||...+-|-
T Consensus 8 W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGG 40 (519)
T 2a65_A 8 WATRLGLILAMAGNAVGLGNFLRFPVQAAENGG 40 (519)
T ss_dssp CSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCC
Confidence 3567888899999999999 5699998777774
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=94.46 E-value=1.1 Score=44.54 Aligned_cols=150 Identities=15% Similarity=0.155 Sum_probs=75.7
Q ss_pred ccCCCchhHHHHHHHHhhhhhhh-hhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636 36 SSRNAKWWYSAFHNVTAMVGAGV-LSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 114 (385)
Q Consensus 36 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~ 114 (385)
..|+.+++...+.+..+.+++.. +..|....+.|+......+.. .+........+..... +.+ ..|.+|+.++=|
T Consensus 47 aGR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~-~~~~~~~~~~~~p~~~-r~~--~~T~~e~l~~Rf 122 (593)
T 2xq2_A 47 AGKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFI-EKG--IYTIPEFVEKRF 122 (593)
T ss_dssp ----CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHH-HHHHHHHHHTHHHHHH-HTT--CCSHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHH-HHHHHHHHHHHHHHHH-hCC--CCCcHHHHHHHc
Confidence 45778889888999888777755 689988778887432221111 1111111222222222 122 469999999999
Q ss_pred CccccccchhHHHHH-HhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHH
Q 016636 115 GEKLGLYIVVPQQLI-VEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAA 193 (385)
Q Consensus 115 G~~~~~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~ 193 (385)
|++.+ .+..+...+ ..+......+...+..++.+++ ++....+++..+++...+..-.++...+.-.+.
T Consensus 123 g~~~~-~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G---------i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ 192 (593)
T 2xq2_A 123 NKKLK-TILAVFWISLYIFVNLTSVLYLGGLALETILG---------IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQ 192 (593)
T ss_dssp CHHHH-HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHTTC---CCHHHHHH
T ss_pred cCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 97643 344333222 2222222222233433333321 333444445555556667777778777777777
Q ss_pred HHHHHH
Q 016636 194 AVMSLS 199 (385)
Q Consensus 194 ~~~~~~ 199 (385)
.+..++
T Consensus 193 ~iiml~ 198 (593)
T 2xq2_A 193 VFFLVL 198 (593)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 664443
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=46.93 E-value=24 Score=34.22 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=57.2
Q ss_pred cCCCchhHHHHHHHHhhhhhhhhhHH----HHHHhh---Cc-----hHHHHHHHHHHHHHHHHHHHHHHc-----chh--
Q 016636 37 SRNAKWWYSAFHNVTAMVGAGVLSLP----YAMAQL---GW-----GPGVAILILSWIITLYTLWQMVEM-----HEM-- 97 (385)
Q Consensus 37 ~~~~s~~~~~~~l~~~~iG~GiL~lP----~af~~~---G~-----~~gii~l~~~~~l~~~s~~~l~~~-----~~~-- 97 (385)
++.-|.++=...+..+-+|+|++.-. ....+. |. -.+...-++=+-+..|+.+.+.-. ..+
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~ 172 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVG 172 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTC
T ss_pred CCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCC
Confidence 44556677777888999999998433 221111 10 012222223233333333333322 111
Q ss_pred cCCc-ccccHHHHHHH-hcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhc
Q 016636 98 VPGK-RFDRYHELGQH-AFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCK 155 (385)
Q Consensus 98 ~~~~-~~~~y~~i~~~-~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~ 155 (385)
.|.. +..=|+=++++ +.|+ .| .++|+.-++...+..+.-+-+....+..-+....+
T Consensus 173 ~pl~iss~l~PllG~r~~~G~-~G-~~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfG 230 (539)
T 4ain_A 173 RKQLLSSAFVPLIGEKGAEGW-LG-KLIDILAIIATVFGTACSLGLGALQIGAGLSAANI 230 (539)
T ss_dssp CCSCTTGGGHHHHHHHHTTSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCcHHHHhHhhcCCCccCCc-ch-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 1110 11235566666 6673 67 47777777665555454555555555555555543
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=45.25 E-value=90 Score=30.01 Aligned_cols=93 Identities=13% Similarity=0.060 Sum_probs=49.1
Q ss_pred cHHHHH-HHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCc
Q 016636 105 RYHELG-QHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNF 183 (385)
Q Consensus 105 ~y~~i~-~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l 183 (385)
=|+-++ ++..|+ .| .++|+.-++...+..+.-+-+....+..-++...+-+.. ......++....+++-.+....+
T Consensus 180 l~PllG~~r~~G~-~G-~~IDilav~at~~G~atsLGlg~~qi~~Gl~~lfGi~~~-~~~qi~ii~vit~~~~~Sa~sGl 256 (509)
T 2wsw_A 180 LVPLVGEKHVNGL-FG-TVVDNFYLVALILAMGTSLGLATPLVTECIQYLFGIPHT-LQLDAIIISCWILLNAICVAFGL 256 (509)
T ss_dssp CHHHHHHHHHHSH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHhhcCCcccCCc-hh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-cHHHHHHHHHHHHHHHHHHHHhH
Confidence 456666 677774 68 477776666555444444444444445444554432211 11112222223334455666666
Q ss_pred -hhhHHHHHHHHHHHHHH
Q 016636 184 -NAIAGVSLAAAVMSLSY 200 (385)
Q Consensus 184 -~~l~~~s~~~~~~~~~~ 200 (385)
|.+|+.|.+.+...+.+
T Consensus 257 ~kGIk~LS~~N~~la~~L 274 (509)
T 2wsw_A 257 QKGVKIASDVRTYLSFLM 274 (509)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 77888888777755543
No 10
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=9.98 E-value=9.2e+02 Score=21.64 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=37.9
Q ss_pred ccHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHH
Q 016636 104 DRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHEL 152 (385)
Q Consensus 104 ~~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~ 152 (385)
....++.+...|+. +..++.+...+..+++..++....++.+..+..+
T Consensus 260 ~p~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~d 307 (445)
T 3l1l_A 260 SPFGDAARMALGDT-AGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADD 307 (445)
T ss_dssp CTHHHHHHHHHCTT-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46889999999964 4477888888888888888888888877776554
Done!