BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016637
(385 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7VLF6|RL13_HAEDU 50S ribosomal protein L13 OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=rplM PE=3 SV=1
Length = 140
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL F+
Sbjct: 68 TDKIYYWHTGYVGGIKDATFKEMISRRPEAVIEIAVKGMLPKGPLGRDMFR 118
>sp|B0BUF9|RL13_ACTPJ 50S ribosomal protein L13 OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=rplM PE=3 SV=1
Length = 142
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL + F+
Sbjct: 70 TDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGREMFR 120
>sp|B3H129|RL13_ACTP7 50S ribosomal protein L13 OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=rplM PE=3 SV=1
Length = 142
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL + F+
Sbjct: 70 TDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGREMFR 120
>sp|A3MZW6|RL13_ACTP2 50S ribosomal protein L13 OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=rplM PE=3 SV=1
Length = 142
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL + F+
Sbjct: 70 TDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGREMFR 120
>sp|Q65T20|RL13_MANSM 50S ribosomal protein L13 OS=Mannheimia succiniciproducens (strain
MBEL55E) GN=rplM PE=3 SV=2
Length = 142
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL F+
Sbjct: 70 TDKVYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFR 120
>sp|A6VPF5|RL13_ACTSZ 50S ribosomal protein L13 OS=Actinobacillus succinogenes (strain
ATCC 55618 / 130Z) GN=rplM PE=3 SV=1
Length = 142
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL F+
Sbjct: 70 TDKVYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFR 120
>sp|P31781|RL13_HAESO 50S ribosomal protein L13 OS=Haemophilus somnus GN=rplM PE=3 SV=1
Length = 142
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL F+
Sbjct: 70 TDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFR 120
>sp|B0UTU4|RL13_HAES2 50S ribosomal protein L13 OS=Haemophilus somnus (strain 2336)
GN=rplM PE=3 SV=1
Length = 142
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL F+
Sbjct: 70 TDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFR 120
>sp|Q0I2N3|RL13_HAES1 50S ribosomal protein L13 OS=Haemophilus somnus (strain 129Pt)
GN=rplM PE=3 SV=1
Length = 142
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL F+
Sbjct: 70 TDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFR 120
>sp|Q9UM07|PADI4_HUMAN Protein-arginine deiminase type-4 OS=Homo sapiens GN=PADI4 PE=1
SV=2
Length = 663
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 48 SIYSVRRF--GVQSVVTTVKSSFVACPELPNGLDYWINPPSNLMHTMSDKELFWRASFVP 105
SI+ F V ++ K CPE N D W+ + + + + P
Sbjct: 312 SIFENEDFLKSVTTLAMKAKCKLTICPEEENMDDQWMQDEMEIGYIQAPHKTLPVVFDSP 371
Query: 106 R---VKEYPFKRVPKIAFMFLTKGP 127
R +KE+P KRV F ++T+GP
Sbjct: 372 RNRGLKEFPIKRVMGPDFGYVTRGP 396
>sp|P44387|RL13_HAEIN 50S ribosomal protein L13 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rplM PE=3 SV=1
Length = 142
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL F+
Sbjct: 70 TDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFR 120
>sp|A5UEW0|RL13_HAEIG 50S ribosomal protein L13 OS=Haemophilus influenzae (strain PittGG)
GN=rplM PE=3 SV=1
Length = 142
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL F+
Sbjct: 70 TDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFR 120
>sp|B8F3F6|RL13_HAEPS 50S ribosomal protein L13 OS=Haemophilus parasuis serovar 5 (strain
SH0165) GN=rplM PE=3 SV=1
Length = 142
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL F+
Sbjct: 70 TDKIYYWHTGYVGGIKDATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFR 120
>sp|A5UC55|RL13_HAEIE 50S ribosomal protein L13 OS=Haemophilus influenzae (strain PittEE)
GN=rplM PE=3 SV=1
Length = 142
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL F+
Sbjct: 70 TDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFR 120
>sp|Q4QKH0|RL13_HAEI8 50S ribosomal protein L13 OS=Haemophilus influenzae (strain
86-028NP) GN=rplM PE=3 SV=1
Length = 142
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 93 SDKELFWRASFVPRVKEYPFK----RVPKIAFMFLTKGPLPLGPLWEKFFK 139
+DK +W +V +K+ FK R P+ KG LP GPL F+
Sbjct: 70 TDKLYYWHTGYVGGIKQATFKEMIARRPEAVIEIAVKGMLPKGPLGRAMFR 120
>sp|A2AHC3|CAMP1_MOUSE Calmodulin-regulated spectrin-associated protein 1 OS=Mus musculus
GN=Camsap1 PE=1 SV=1
Length = 1581
Score = 33.1 bits (74), Expect = 3.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 45 SLISIYSVRRFGVQSVVTTVK--SSFVACPELP----NGLDYWINPPSNLMHTMSDKEL 97
+L+ Y+V ++ VV +VK S+F A ELP + + +WIN + M +++KE+
Sbjct: 149 ALMMAYTVEMISIEKVVASVKRFSTFSASKELPYDLEDAMVFWINKVNLKMREITEKEV 207
>sp|Q5T5Y3|CAMP1_HUMAN Calmodulin-regulated spectrin-associated protein 1 OS=Homo sapiens
GN=CAMSAP1 PE=1 SV=2
Length = 1602
Score = 33.1 bits (74), Expect = 3.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 45 SLISIYSVRRFGVQSVVTTVK--SSFVACPELP----NGLDYWINPPSNLMHTMSDKEL 97
+L+ Y+V ++ VV +VK S+F A ELP + + +WIN + M +++KE+
Sbjct: 150 ALMMAYTVEMISIEKVVASVKRFSTFSASKELPYDLEDAMVFWINKVNLKMREITEKEV 208
>sp|A5WUN7|CAM1B_DANRE Calmodulin-regulated spectrin-associated protein 1-B OS=Danio rerio
GN=camsap1b PE=3 SV=1
Length = 1558
Score = 32.0 bits (71), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 27 PLRLFQLFGLFLALCIAFSLISIYSVRRFGVQSVVTTVK--SSFVACPELP----NGLDY 80
P+++ + AL +A Y+V ++ VV+ VK S+F A ELP + + +
Sbjct: 142 PIKMSSHIPMIDALMMA------YTVEMISIEKVVSCVKRFSTFSASKELPFDLEDAMIF 195
Query: 81 WINPPSNLMHTMSDKE 96
WIN + M +++KE
Sbjct: 196 WINKVNLKMREITEKE 211
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 151,753,161
Number of Sequences: 539616
Number of extensions: 6484177
Number of successful extensions: 14772
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 14758
Number of HSP's gapped (non-prelim): 18
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)