Query 016637
Match_columns 385
No_of_seqs 256 out of 828
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 08:39:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 7.1E-47 1.5E-51 383.2 20.6 245 113-381 75-362 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 1.9E-47 4.1E-52 361.7 10.8 222 118-345 1-244 (244)
3 KOG0799 Branching enzyme [Carb 99.9 1.9E-27 4E-32 244.1 13.5 213 117-336 104-350 (439)
4 TIGR01310 L7 60S ribosomal pro 42.8 92 0.002 30.1 7.1 101 109-226 65-168 (235)
5 PF07172 GRP: Glycine rich pro 28.2 59 0.0013 26.9 2.9 17 32-48 4-20 (95)
6 cd06439 CESA_like_1 CESA_like_ 23.9 4.8E+02 0.01 23.7 8.6 99 112-223 25-132 (251)
7 COG0036 Rpe Pentose-5-phosphat 19.2 93 0.002 29.8 2.7 35 114-152 2-36 (220)
8 TIGR02209 ftsL_broad cell divi 18.0 1.5E+02 0.0032 23.1 3.2 23 29-51 2-24 (85)
9 PF11293 DUF3094: Protein of u 17.3 1.8E+02 0.0039 21.8 3.2 23 27-49 27-49 (55)
10 PF14851 FAM176: FAM176 family 16.0 1.3E+02 0.0028 27.2 2.7 19 34-52 22-40 (153)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=7.1e-47 Score=383.16 Aligned_cols=245 Identities=18% Similarity=0.252 Sum_probs=190.3
Q ss_pred CCCCeEEEEEEe-cCC-CchHHHHHHHHhhcCCcEEEEEecCCccccc---------------CCCCCceeeeeecCccc
Q 016637 113 KRVPKIAFMFLT-KGP-LPLGPLWEKFFKGHEGLYSIYVHSLPTFENK---------------FPSSSVFYNRQIPSQIS 175 (385)
Q Consensus 113 ~~~~KIAfLiLa-~~p-~~l~~L~~~~~~~~~~~ysIyIHiD~~~~~~---------------~~~~~VF~~r~Ips~~V 175 (385)
..+||+||||++ +|+ .+++||+++++++++. ||||+|++.... ...+||++.. ++..|
T Consensus 75 ~~~~r~AYLI~~h~~d~~~l~RLL~aLYhprN~---y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~--k~~~V 149 (421)
T PLN03183 75 DKLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQ---YVVHLDLESPAEERLELASRVENDPMFSKVGNVYMIT--KANLV 149 (421)
T ss_pred CCCCeEEEEEEecCCcHHHHHHHHHHhcCCCce---EEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEe--cceee
Confidence 357999999999 565 7999999999987654 799999864211 1245777521 23469
Q ss_pred cCCcccHHHHHHHHHHHHHhC-CCCCEEEEecCCCcccCChHHH-HHHHHh-CCCCceeeccCCCCCCCCcccc------
Q 016637 176 EWGKMSMCDAERRLLANALLD-ISNEWFILVSESCIPLYNFSLI-YHYIKK-SKHSFMGSFDDPGPYGRGRYNA------ 246 (385)
Q Consensus 176 ~WG~~SlV~Ael~LL~~AL~d-~~~dyfvLLSgsd~PL~s~~~I-~~~L~~-~~~sFIe~~~~~~~~~r~Ry~~------ 246 (385)
.|||+|||+||+++|+.+|+. .+|||||||||+||||+++++| +.|+.. .+++||++..+.+.....|+..
T Consensus 150 ~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pg 229 (421)
T PLN03183 150 TYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPG 229 (421)
T ss_pred ccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCc
Confidence 999999999999999999984 5899999999999999999995 566654 6789999875432211112110
Q ss_pred ----c----c----CcCcC-ccccccccceeEecHHHHHHhHhcccchhH-HHhhcCCCCCCCchhHHHHhhcc--CCcc
Q 016637 247 ----N----M----APVVN-ITQWRKGSQWFEINRRLAVNIVEDTTYYPK-FAEFCRPPCYVDEHYFPTMLSIQ--MPNL 310 (385)
Q Consensus 247 ----~----m----~p~i~-~~~~~kGSQWf~LtR~~a~~Il~d~~~~~~-F~~~~~~~c~pDE~yf~TlL~n~--~~~~ 310 (385)
. + ....| ..++++|||||+|||++|+||+...+..++ .+.|++.+++|||+||||+++|+ ++++
T Consensus 230 l~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t 309 (421)
T PLN03183 230 LYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKT 309 (421)
T ss_pred eeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhccccccc
Confidence 0 0 01122 256899999999999999999986544443 55566767889999999999997 7899
Q ss_pred cCCCcceEEeCCCCC-CCCcccccCCCCHHHHHHHhcCCccccCCCCCCCCceEEecCCCCCchHHHHhhhh
Q 016637 311 LANRSSTWVDWSRGG-AHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSK 381 (385)
Q Consensus 311 i~n~~lryidWs~g~-~hP~~~~~~D~~~~~l~~l~~~~~c~yn~~~~~~~~LFARKF~~~~~~~Ll~l~~~ 381 (385)
+.|+++|||||++++ .||++|+.+|+ ++|.++ .++|||||+. ++++|+.+++
T Consensus 310 ~vn~nLRyI~W~~~~~~~P~~l~~~D~-----~~l~~S------------~~lFARKFd~--d~~vl~~Id~ 362 (421)
T PLN03183 310 AVNHDLHYISWDNPPKQHPHTLSLNDT-----EKMIAS------------GAAFARKFRR--DDPVLDKIDK 362 (421)
T ss_pred ccCCceeEEecCCCCCCCCcccCHHHH-----HHHHhC------------CCccccCCCC--ChHHHHHHHH
Confidence 999999999999775 49999999998 788876 4899999996 5788888865
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=1.9e-47 Score=361.67 Aligned_cols=222 Identities=31% Similarity=0.547 Sum_probs=150.8
Q ss_pred EEEEEEe-c-CCCchHHHHHHHHhhcCCcEEEEEecCCccc----c-----cCCCCCceeeeeec-CccccCCcccHHHH
Q 016637 118 IAFMFLT-K-GPLPLGPLWEKFFKGHEGLYSIYVHSLPTFE----N-----KFPSSSVFYNRQIP-SQISEWGKMSMCDA 185 (385)
Q Consensus 118 IAfLiLa-~-~p~~l~~L~~~~~~~~~~~ysIyIHiD~~~~----~-----~~~~~~VF~~r~Ip-s~~V~WG~~SlV~A 185 (385)
|||||++ + ++.++++|++.++++. +. +|||+|++.. . ....++|++ ++ +.+|.||++|||+|
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~~~~-~~--f~iHiD~k~~~~~~~~~~~~~~~~~nv~~---v~~r~~v~WG~~S~v~A 74 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLYHPD-ND--FYIHIDKKSPDYFYEEIKKLISCFPNVHF---VPKRVDVRWGGFSLVEA 74 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH--TT-SE--EEEEE-TTS-HHHHHHHHHHHCT-TTEEE----SS-----TTSHHHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhcCCC-CE--EEEEEcCCCChHHHHHHHHhcccCCceee---cccccccccCCccHHHH
Confidence 7999999 7 6678888888888654 43 5788887521 1 123467755 55 67999999999999
Q ss_pred HHHHHHHHHh-CCCCCEEEEecCCCcccCChHHHHHHHHhC--CCCceeeccCCCCCCCCccccc----cCcCcCccccc
Q 016637 186 ERRLLANALL-DISNEWFILVSESCIPLYNFSLIYHYIKKS--KHSFMGSFDDPGPYGRGRYNAN----MAPVVNITQWR 258 (385)
Q Consensus 186 el~LL~~AL~-d~~~dyfvLLSgsd~PL~s~~~I~~~L~~~--~~sFIe~~~~~~~~~r~Ry~~~----m~p~i~~~~~~ 258 (385)
|++||+.|++ +++|+|||||||+|+||+++++|++||+.+ +.+|+++...++....+||... +.+.++..+++
T Consensus 75 ~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 154 (244)
T PF02485_consen 75 TLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYDPFRPFFRKRTLY 154 (244)
T ss_dssp HHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEETTEEEEEEEE--E
T ss_pred HHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeeeeccccccccccc
Confidence 9999999999 789999999999999999999999999876 4788999877654333666543 33444445899
Q ss_pred cccceeEecHHHHHHhHhcccchhHHHhhcCCCCCCCchhHHHHhhcc--CCcccCCCcceEEeCC-CCCCCCcccccCC
Q 016637 259 KGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQ--MPNLLANRSSTWVDWS-RGGAHPATFGRAD 335 (385)
Q Consensus 259 kGSQWf~LtR~~a~~Il~d~~~~~~F~~~~~~~c~pDE~yf~TlL~n~--~~~~i~n~~lryidWs-~g~~hP~~~~~~D 335 (385)
+|||||+|||++|++|+.|....+.++.+|+.+++|||+||||+|.|+ +++++.|+++|||||+ ++++||++++..|
T Consensus 155 ~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~~~~~p~~~~~~~ 234 (244)
T PF02485_consen 155 KGSQWFSLTRDFVEYILDDPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRRGGCHPKTLTICD 234 (244)
T ss_dssp EE-S--EEEHHHHHHHHH-HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT-SS---SSEEEE
T ss_pred ccceeeEeeHHHHHHhhhhHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEEECCCCCCCCCCeeeeee
Confidence 999999999999999998888888999999889999999999999998 7899999999999999 8899999999999
Q ss_pred CCHHHHHHHh
Q 016637 336 ITEEFFKKVY 345 (385)
Q Consensus 336 ~~~~~l~~l~ 345 (385)
++.+.|+.|+
T Consensus 235 ~~~~d~~~~~ 244 (244)
T PF02485_consen 235 LGPEDLPWLK 244 (244)
T ss_dssp --GGGHHHH-
T ss_pred eCHHHHHhhC
Confidence 9998887763
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.95 E-value=1.9e-27 Score=244.06 Aligned_cols=213 Identities=17% Similarity=0.223 Sum_probs=161.0
Q ss_pred eEEEEEEe-cCCCchHHHHHHHHhhcCCcEEEEEecCCcccc----cC-----CCCCceeeeeec-CccccCCcccHHHH
Q 016637 117 KIAFMFLT-KGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFEN----KF-----PSSSVFYNRQIP-SQISEWGKMSMCDA 185 (385)
Q Consensus 117 KIAfLiLa-~~p~~l~~L~~~~~~~~~~~ysIyIHiD~~~~~----~~-----~~~~VF~~r~Ip-s~~V~WG~~SlV~A 185 (385)
-+||+.++ ++-.++++++.+.|+++ +. .+||+|.+... .+ ..+||+. ++ +..|.|||.|++.|
T Consensus 104 ~~a~~~~v~kd~~~verll~aiYhPq-N~--ycihvD~~s~~~fk~~~~~L~~cf~NV~v---~~k~~~v~~~G~s~l~a 177 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQAIYHPQ-NV--YCIHVDAKSPPEFRVAMQQLASCFPNVIV---LPKRESVTYGGHSILAA 177 (439)
T ss_pred ceEEEEeecccHHHHHHHHHHHhCCc-Cc--ceEEECCCCCHHHHHHHHHHHhcCCceEE---eccccceecCCchhhHH
Confidence 35555555 77789999999999986 43 46999975322 11 2355554 32 45899999999999
Q ss_pred HHHHHHHHHhCC-CCCEEEEecCCCcccCChHHHHHHHHh-CCCCceeeccCCCCC-CC-Cc-------ccc----ccCc
Q 016637 186 ERRLLANALLDI-SNEWFILVSESCIPLYNFSLIYHYIKK-SKHSFMGSFDDPGPY-GR-GR-------YNA----NMAP 250 (385)
Q Consensus 186 el~LL~~AL~d~-~~dyfvLLSgsd~PL~s~~~I~~~L~~-~~~sFIe~~~~~~~~-~r-~R-------y~~----~m~p 250 (385)
.++||+.+++.. +|+||++|||+|+||+|+.|+.+.|+. ++.+||+.....+.. .+ .+ |-. .+.+
T Consensus 178 ~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~~~~~~~s~~~~~ 257 (439)
T KOG0799|consen 178 HLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDLKYFRNKSPLPWV 257 (439)
T ss_pred HHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCcccccchheecCCCccc
Confidence 999999999965 699999999999999999999999987 789999986544311 01 11 100 0111
Q ss_pred CcC-ccccccccceeEecHHHHHHhHhcccchhHHHhhcCCCCCCCchhHHHHhhccCCcccCCCc--ceEEeCCCC---
Q 016637 251 VVN-ITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCYVDEHYFPTMLSIQMPNLLANRS--STWVDWSRG--- 324 (385)
Q Consensus 251 ~i~-~~~~~kGSQWf~LtR~~a~~Il~d~~~~~~F~~~~~~~c~pDE~yf~TlL~n~~~~~i~n~~--lryidWs~g--- 324 (385)
.+| ...+++||.|++|+|.+|+|++.+ .....+.++++++..|||+||+|+++|.++..-.+.+ +|++.|..+
T Consensus 258 ~lp~~~ki~~Gs~~~~LsR~fv~y~i~~-~~~~~ll~~~~~t~~~dE~f~~Tl~~n~~~~~g~~~~~~lr~~~W~~~~~~ 336 (439)
T KOG0799|consen 258 ILPTALKLFKGSAWVSLSRAFVEYLISG-NLPRTLLMYYNNTYSPDEGFFHTLQCNPFGMPGVFNDECLRYTNWDRKDVD 336 (439)
T ss_pred cCCCceEEEecceeEEEeHHHHHHHhcC-ccHHHHHHHHhCccCcchhhhHhhhccccCCCCcccchhhcceeccccccc
Confidence 122 246899999999999999999999 4455788888899999999999999999555555666 999999962
Q ss_pred --CCCCcccccCCC
Q 016637 325 --GAHPATFGRADI 336 (385)
Q Consensus 325 --~~hP~~~~~~D~ 336 (385)
+.||+.++..|+
T Consensus 337 ~~~~~c~~~~~~~~ 350 (439)
T KOG0799|consen 337 PPKQHCHSLTVRDF 350 (439)
T ss_pred ccccCCcccccccc
Confidence 457777776665
No 4
>TIGR01310 L7 60S ribosomal protein L7, eukaryotic. Members of this family average ~ 250 residues in length, somewhat longer than the archaeal L30P/L7E homolog (~ 155 residues) and much longer than the related bacterial/organellar form (~ 60 residues).
Probab=42.85 E-value=92 Score=30.09 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=59.3
Q ss_pred CCCCCCCCeEEEEEEecCCCchHHHHHHHHh---hcCCcEEEEEecCCcccccCCCCCceeeeeecCccccCCcccHHHH
Q 016637 109 EYPFKRVPKIAFMFLTKGPLPLGPLWEKFFK---GHEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKMSMCDA 185 (385)
Q Consensus 109 ~~p~~~~~KIAfLiLa~~p~~l~~L~~~~~~---~~~~~ysIyIHiD~~~~~~~~~~~VF~~r~Ips~~V~WG~~SlV~A 185 (385)
.++.+..+|++|+|-.+|...+.+=.++..+ =++-.-.++|-..++....+..... -|.||..|+
T Consensus 65 ~~~~~~e~kl~fVIRirG~~~v~p~v~k~L~lLRL~~in~~Vfvk~~~~~~~ML~~Vep---------YVt~G~p~l--- 132 (235)
T TIGR01310 65 KFYVPAEHKLLFVIRIKGINGIPPKPRKVLRLLRLKQVHNGVFVKVNKATLQMLRIVEP---------YVAYGYPNL--- 132 (235)
T ss_pred CcCCCCCCeEEEEEEeCCCCCCCHHHHHHHHHhCCCccceEEEEECCHHHHHHHHhcCC---------eEEEecCCH---
Confidence 4556678899999999776544444444333 1111122666666544322222222 368999985
Q ss_pred HHHHHHHHHhCCCCCEEEEecCCCcccCChHHHHHHHHhCC
Q 016637 186 ERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIKKSK 226 (385)
Q Consensus 186 el~LL~~AL~d~~~dyfvLLSgsd~PL~s~~~I~~~L~~~~ 226 (385)
..+++++..-. +.-+.|+-+||-++.-+.+.|.+.|
T Consensus 133 --~tvr~Li~KRG---~~k~~~~~v~Ltdn~iiE~~lg~~g 168 (235)
T TIGR01310 133 --KSVRELIYKRG---FAKINGQRVPLTDNTIIEQHLGKYG 168 (235)
T ss_pred --HHHHHHHHHhC---ceeeCCCeeeCChhHHHHHhhccCC
Confidence 34455544322 3557788889988888888875444
No 5
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=28.16 E-value=59 Score=26.92 Aligned_cols=17 Identities=41% Similarity=0.344 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 016637 32 QLFGLFLALCIAFSLIS 48 (385)
Q Consensus 32 ~~~~~~~~~~~~~~~~~ 48 (385)
+.|||+.++++++.+|+
T Consensus 4 K~~llL~l~LA~lLlis 20 (95)
T PF07172_consen 4 KAFLLLGLLLAALLLIS 20 (95)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34455555554544444
No 6
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=23.90 E-value=4.8e+02 Score=23.69 Aligned_cols=99 Identities=13% Similarity=0.109 Sum_probs=57.4
Q ss_pred CCCCCeEEEEEEe-cCCCchHHHHHHHHhhcC--CcEEEEEecCCccccc------CCCCCceeeeeecCccccCCcccH
Q 016637 112 FKRVPKIAFMFLT-KGPLPLGPLWEKFFKGHE--GLYSIYVHSLPTFENK------FPSSSVFYNRQIPSQISEWGKMSM 182 (385)
Q Consensus 112 ~~~~~KIAfLiLa-~~p~~l~~L~~~~~~~~~--~~ysIyIHiD~~~~~~------~~~~~VF~~r~Ips~~V~WG~~Sl 182 (385)
.+..|+++.+|.+ +....+++.++.+.+... ..+.|+|..|.+-... ....++.+ +.. ... .+.
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~v~~---i~~--~~~--~g~ 97 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADKGVKL---LRF--PER--RGK 97 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhCcEEE---EEc--CCC--CCh
Confidence 4557899999999 555678888888776321 2367888877543211 11112322 211 112 234
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEecCCCcccCChHHHHHHHH
Q 016637 183 CDAERRLLANALLDISNEWFILVSESCIPLYNFSLIYHYIK 223 (385)
Q Consensus 183 V~Ael~LL~~AL~d~~~dyfvLLSgsd~PL~s~~~I~~~L~ 223 (385)
..|-..+++.| ..||++++-+.|+|- .+.+...+.
T Consensus 98 ~~a~n~gi~~a----~~d~i~~lD~D~~~~--~~~l~~l~~ 132 (251)
T cd06439 98 AAALNRALALA----TGEIVVFTDANALLD--PDALRLLVR 132 (251)
T ss_pred HHHHHHHHHHc----CCCEEEEEccccCcC--HHHHHHHHH
Confidence 55555555543 349999999999885 455555443
No 7
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=19.25 E-value=93 Score=29.77 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=30.1
Q ss_pred CCCeEEEEEEecCCCchHHHHHHHHhhcCCcEEEEEecC
Q 016637 114 RVPKIAFMFLTKGPLPLGPLWEKFFKGHEGLYSIYVHSL 152 (385)
Q Consensus 114 ~~~KIAfLiLa~~p~~l~~L~~~~~~~~~~~ysIyIHiD 152 (385)
.+++||..||+-+...+.+-++++.+.+.+ +||+|
T Consensus 2 ~~~~iapSILsaD~~~l~~el~~~~~agad----~iH~D 36 (220)
T COG0036 2 KMMKIAPSILSADFARLGEELKALEAAGAD----LIHID 36 (220)
T ss_pred CCceeeeehhhCCHhHHHHHHHHHHHcCCC----EEEEe
Confidence 357999999999999999999999875445 79998
No 8
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=18.02 E-value=1.5e+02 Score=23.14 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 016637 29 RLFQLFGLFLALCIAFSLISIYS 51 (385)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~ 51 (385)
+++.++++.++++++++++....
T Consensus 2 ~~l~~~l~~~v~~~~~~~v~~~~ 24 (85)
T TIGR02209 2 KKLYVLLLLAILVSAISVVSAQH 24 (85)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777666443
No 9
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=17.29 E-value=1.8e+02 Score=21.78 Aligned_cols=23 Identities=26% Similarity=0.589 Sum_probs=12.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHh
Q 016637 27 PLRLFQLFGLFLALCIAFSLISI 49 (385)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~ 49 (385)
|+|-.++++++++..+++++++-
T Consensus 27 PFrP~~Ll~~li~Vv~gl~llS~ 49 (55)
T PF11293_consen 27 PFRPWRLLIVLIVVVIGLGLLSR 49 (55)
T ss_pred CcchHHHHHHHHHHHHHHHHHHH
Confidence 33334444445566667776653
No 10
>PF14851 FAM176: FAM176 family
Probab=16.02 E-value=1.3e+02 Score=27.20 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 016637 34 FGLFLALCIAFSLISIYSV 52 (385)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~ 52 (385)
|.|+||++||++++.....
T Consensus 22 ~aLYFv~gVC~GLlLtLcl 40 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCL 40 (153)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6778888998888765543
Done!