Query 016637
Match_columns 385
No_of_seqs 256 out of 828
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 16:56:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 2.5E-53 8.5E-58 428.6 15.7 267 91-383 50-381 (391)
2 2fy7_A Beta-1,4-galactosyltran 64.4 78 0.0027 29.5 12.3 124 68-215 16-146 (287)
3 3u5c_d S36, YS29, 40S ribosoma 13.3 1.9E+02 0.0066 20.7 3.6 44 326-385 9-52 (56)
4 1iio_A Conserved hypothetical 11.3 63 0.0022 25.2 0.5 21 204-224 60-80 (84)
5 3j20_P 30S ribosomal protein S 8.6 4.4E+02 0.015 18.7 4.1 45 325-385 8-52 (56)
6 3iz6_N 40S ribosomal protein S 7.2 2.4E+02 0.0084 20.1 2.2 44 326-385 9-52 (56)
7 4fix_A UDP-galactofuranosyl tr 6.4 8.9E+02 0.031 25.0 7.1 104 112-224 176-295 (657)
8 3bcv_A Putative glycosyltransf 6.2 7.8E+02 0.027 20.5 5.6 104 114-229 3-116 (240)
9 2el8_A Signal-transducing adap 6.1 4.2E+02 0.014 20.9 3.4 37 169-208 17-53 (118)
10 3kdp_B Sodium/potassium-transp 5.3 4.9E+02 0.017 24.4 3.9 25 28-52 16-40 (286)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=2.5e-53 Score=428.60 Aligned_cols=267 Identities=16% Similarity=0.191 Sum_probs=210.6
Q ss_pred CCChHHHHHHhhcCCccc---CCC---CC---CCCeEEEEEEe-cCCCchHHHHHHHHhhcCCcEEEEEecCCcccc---
Q 016637 91 TMSDKELFWRASFVPRVK---EYP---FK---RVPKIAFMFLT-KGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFEN--- 157 (385)
Q Consensus 91 ~~~d~el~~~as~~~~~~---~~p---~~---~~~KIAfLiLa-~~p~~l~~L~~~~~~~~~~~ysIyIHiD~~~~~--- 157 (385)
.++|++++.....|+.+. .|. .+ ..+||||||++ ++..++++|++.++++. +.||||+|++...
T Consensus 50 ~~~~~~~~~~~~~C~~~~~~~~~~~~pl~~~e~~~kiAflil~h~d~~~l~rll~~ly~p~---n~y~IHvD~ks~~~~~ 126 (391)
T 2gak_A 50 RWTPHDYINMTRDCASFIRTRKYIVEPLTKEEVGFPIAYSIVVHHKIEMLDRLLRAIYMPQ---NFYCIHVDRKAEESFL 126 (391)
T ss_dssp CCCHHHHHHHTTSHHHHHHHHTCCCSCSCHHHHTSCEEEEEEECSCHHHHHHHHHHHCCTT---SEEEEEECTTSCHHHH
T ss_pred ccCcchhccccCCchhhhhcccccCCCCCccccCCCEEEEEEecCCHHHHHHHHHHHhCCC---CeEEEEEeCCCCHHHH
Confidence 568888888766676532 332 22 25799999999 66778899998887653 2378999986321
Q ss_pred -cC-----CCCCceeeeee-cCccccCCcccHHHHHHHHHHHHHhCC-CCCEEEEecCCCcccCChHHHHHHHHh-CCCC
Q 016637 158 -KF-----PSSSVFYNRQI-PSQISEWGKMSMCDAERRLLANALLDI-SNEWFILVSESCIPLYNFSLIYHYIKK-SKHS 228 (385)
Q Consensus 158 -~~-----~~~~VF~~r~I-ps~~V~WG~~SlV~Ael~LL~~AL~d~-~~dyfvLLSgsd~PL~s~~~I~~~L~~-~~~s 228 (385)
.+ ..++|++ + ++..|.|||+|||+||++||++||++. +|+|||||||+|+||+|+++|++||+. +++|
T Consensus 127 ~~~~~~~~~f~NV~v---~~~~~~v~WGg~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~n 203 (391)
T 2gak_A 127 AAVQGIASCFDNVFV---ASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGEN 203 (391)
T ss_dssp HHHHHHHHTCTTEEE---CSSCCCCCTTSHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhcCCCEEE---eccCcccccCCchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCc
Confidence 11 1345554 2 367999999999999999999999965 899999999999999999999999986 6899
Q ss_pred ceeeccCCCC-CCCCcccc--------------ccCcCcCccccccccceeEecHHHHHHhHhcccchhHHHhhcCCCCC
Q 016637 229 FMGSFDDPGP-YGRGRYNA--------------NMAPVVNITQWRKGSQWFEINRRLAVNIVEDTTYYPKFAEFCRPPCY 293 (385)
Q Consensus 229 FIe~~~~~~~-~~r~Ry~~--------------~m~p~i~~~~~~kGSQWf~LtR~~a~~Il~d~~~~~~F~~~~~~~c~ 293 (385)
||++.++++. ..|.+|.+ ++.|. ..+|++|||||+|+|++|++|++|.. .++|.+||+++|+
T Consensus 204 FIe~~~~~~~~~~R~~~~~~~~~~~l~~~~~~k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k~t~~ 280 (391)
T 2gak_A 204 NLETEKMPPNKEERWKKRYAVVDGKLTNTGIVKAPPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQDTYS 280 (391)
T ss_dssp BCCBEECCGGGSHHHHEEEEEETTEEEEEEEECCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHTTSSS
T ss_pred eeeccCCCcccccceEeeeeccccceeeecccccCCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHcCCcC
Confidence 9999987653 12222221 12232 35799999999999999999999865 6789999999999
Q ss_pred CCchhHHHHhhcc-CCccc----------CCCcceEEeCC-------CCCCCCc----------ccccCCCCHHHHHHHh
Q 016637 294 VDEHYFPTMLSIQ-MPNLL----------ANRSSTWVDWS-------RGGAHPA----------TFGRADITEEFFKKVY 345 (385)
Q Consensus 294 pDE~yf~TlL~n~-~~~~i----------~n~~lryidWs-------~g~~hP~----------~~~~~D~~~~~l~~l~ 345 (385)
||||||||++.+. .++.+ +|+++|||+|+ +|++||. +|+.+|+ +.|+
T Consensus 281 pDE~ffqTll~~~~~pg~~~~~~~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl-----~~l~ 355 (391)
T 2gak_A 281 PDEFLWATIQRIPEVPGSFPSSNKYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDL-----SWML 355 (391)
T ss_dssp GGGTHHHHHTTSTTSTTCCCSSGGGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGH-----HHHT
T ss_pred CchhHHHHHhhccCCCCccccccccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHH-----HHHH
Confidence 9999999999986 45433 47899999997 3556887 7888887 7787
Q ss_pred cCCccccCCCCCCCCceEEecCCCCCchHHHHhhhhhh
Q 016637 346 GGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVL 383 (385)
Q Consensus 346 ~~~~c~yn~~~~~~~~LFARKF~~~~~~~Ll~l~~~~~ 383 (385)
++ ++||||||++++++++++.+++.+
T Consensus 356 ~s------------~~lFARKF~~~~d~~~l~~l~~~l 381 (391)
T 2gak_A 356 RQ------------HHLFANKFDMDVDPFAIQCLDEHL 381 (391)
T ss_dssp TS------------CCSEEECCCTTTCHHHHHHHHHHH
T ss_pred hC------------CCceEEccCCccCHHHHHHHHHHH
Confidence 64 699999999999999999998764
No 2
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=64.40 E-value=78 Score=29.50 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=72.3
Q ss_pred cccCCCCCCCcccccCCCCCCCCCCChHHHHHHhhcC-CcccCCCC--CCCCeEEEEEEe-cCCCchHHHHHHHH---hh
Q 016637 68 FVACPELPNGLDYWINPPSNLMHTMSDKELFWRASFV-PRVKEYPF--KRVPKIAFMFLT-KGPLPLGPLWEKFF---KG 140 (385)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~el~~~as~~-~~~~~~p~--~~~~KIAfLiLa-~~p~~l~~L~~~~~---~~ 140 (385)
...|......|..-+.. ....+++-||+....... +.-.--|. ...++|+.+|-+ +....|.+.++.+. +.
T Consensus 16 ~~~c~~~~~~l~g~~~~--~~~~~~~~~~~~~~~~~~~~gg~~~p~~c~~~~~VSIIIP~yN~~~~L~~~L~sl~~~l~q 93 (287)
T 2fy7_A 16 LPACPEESPLLVGPMLI--EFNMPVDLELVAKQNPNVKMGGRYAPRDCVSPHKVAIIIPFRNRQEHLKYWLYYLHPVLQR 93 (287)
T ss_dssp CCBCCSSCTTCCCBCCC--CCCSCCCHHHHHHHCTTCBTTTEECCSSSBCSCEEEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCcCCCCCcCCcCccee--cccCCCCHHHHHhhCCCcccCCcCcCCCCCcCCcEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 56788755455543322 122367788887543322 11111121 235799999999 66678899998887 33
Q ss_pred cCCcEEEEEecCCcccccCCCCCceeeeeecCccccCCcccHHHHHHHHHHHHHhCCCCCEEEEecCCCcccCCh
Q 016637 141 HEGLYSIYVHSLPTFENKFPSSSVFYNRQIPSQISEWGKMSMCDAERRLLANALLDISNEWFILVSESCIPLYNF 215 (385)
Q Consensus 141 ~~~~ysIyIHiD~~~~~~~~~~~VF~~r~Ips~~V~WG~~SlV~Ael~LL~~AL~d~~~dyfvLLSgsd~PL~s~ 215 (385)
....|.|+|--|. . + ++++...|--.++..|++....+|++++-+.|+|..+.
T Consensus 94 ~~~~~EIiVVdds--~-----d---------------~~f~~a~a~N~G~~~al~~A~gd~i~flD~D~i~~~d~ 146 (287)
T 2fy7_A 94 QQLDYGIYVINQA--G-----D---------------TIFNRAKLLNVGFQEALKDYDYTCFVFSDVDLIPMNDH 146 (287)
T ss_dssp TTCEEEEEEEEEC--S-----S---------------SCCCHHHHHHHHHHHHHHHSCCCEEEEECTTEEESBTT
T ss_pred hcCCceEEEEEeC--C-----C---------------CccchhhhhhhHHHHHHHhCCCCEEEEECCCcccCCCc
Confidence 3345666642221 0 0 12233334334454566656789999999999998874
No 3
>3u5c_d S36, YS29, 40S ribosomal protein S29-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_N 3o30_S 3o2z_S 3u5g_d 3jyv_N* 1s1h_N
Probab=13.34 E-value=1.9e+02 Score=20.67 Aligned_cols=44 Identities=18% Similarity=0.443 Sum_probs=30.6
Q ss_pred CCCcccccCCCCHHHHHHHhcCCccccCCCCCCCCceEEecCCCCCchHHHHhhhhhhCC
Q 016637 326 AHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVLGF 385 (385)
Q Consensus 326 ~hP~~~~~~D~~~~~l~~l~~~~~c~yn~~~~~~~~LFARKF~~~~~~~Ll~l~~~~~~~ 385 (385)
.||+.|+.. +..|..-|.+ .=.-|||.......-++....-+||
T Consensus 9 shpr~~G~g------------s~rC~vcGr~----~g~iRkfGl~lcR~cfRe~A~~iGF 52 (56)
T 3u5c_d 9 SHPRRYGKG------------SRQCRVCSSH----TGLIRKYGLNICRQCFREKANDIGF 52 (56)
T ss_dssp CCCCSSSGG------------GCCCTTTCCC----SSEECGGGCCEEHHHHHHHHHHHTC
T ss_pred cCCcccCCC------------cceeecCCCC----cccccccCcchhHHHHHHHHHhcCc
Confidence 489999832 3346554432 4578999988777777777777776
No 4
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=11.26 E-value=63 Score=25.17 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=17.6
Q ss_pred EecCCCcccCChHHHHHHHHh
Q 016637 204 LVSESCIPLYNFSLIYHYIKK 224 (385)
Q Consensus 204 LLSgsd~PL~s~~~I~~~L~~ 224 (385)
+|..+|||+++.+++.+-+..
T Consensus 60 ll~~~DFP~ksA~~lAd~iv~ 80 (84)
T 1iio_A 60 VLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHHH
T ss_pred hCCcccCCCCCHHHHHHHHHH
Confidence 477899999999999887753
No 5
>3j20_P 30S ribosomal protein S14P type Z; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=8.56 E-value=4.4e+02 Score=18.72 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=30.8
Q ss_pred CCCCcccccCCCCHHHHHHHhcCCccccCCCCCCCCceEEecCCCCCchHHHHhhhhhhCC
Q 016637 325 GAHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVLGF 385 (385)
Q Consensus 325 ~~hP~~~~~~D~~~~~l~~l~~~~~c~yn~~~~~~~~LFARKF~~~~~~~Ll~l~~~~~~~ 385 (385)
..||+.|+.. +..|..-|.+ .=.-|||.......-+.....-+||
T Consensus 8 ~~~~r~~grg------------~~rC~vcGr~----~g~iRkfGL~~cR~cfRe~A~~iGF 52 (56)
T 3j20_P 8 KRKPRKFGKG------------ARRCIRCGQY----GPIIRIQGLMLCRHCFREVAPKLGF 52 (56)
T ss_dssp CCSCCSSSST------------TCCCSSSCCS----SSCCCTTTCCCCHHHHHHHHHHHTC
T ss_pred CCCCcccCCC------------ceEeecCCCC----cccccccCChHHHHHHHHHHHhcCc
Confidence 3588888843 3346555543 3457999998777777777777776
No 6
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=7.25 E-value=2.4e+02 Score=20.08 Aligned_cols=44 Identities=20% Similarity=0.449 Sum_probs=29.5
Q ss_pred CCCcccccCCCCHHHHHHHhcCCccccCCCCCCCCceEEecCCCCCchHHHHhhhhhhCC
Q 016637 326 AHPATFGRADITEEFFKKVYGGQHCKYNNQPSTVCFLFGRKFAPSALQPLMNISSKVLGF 385 (385)
Q Consensus 326 ~hP~~~~~~D~~~~~l~~l~~~~~c~yn~~~~~~~~LFARKF~~~~~~~Ll~l~~~~~~~ 385 (385)
.||+.|+.. +..|..-|.+ .=.-|||.......-++....-+||
T Consensus 9 sh~r~~G~g------------~~rC~vcGr~----~g~iRkfGL~~cR~cfRe~A~~iGF 52 (56)
T 3iz6_N 9 SHPKNYGAG------------SRVCRVCGNS----HGLIRKYGLMCCRQCFRSDAKDIGF 52 (56)
T ss_dssp CCCCCCCCC------------CCCCSSCCCS----CCCTTTTSCTTHHHHHHTTCCSTTC
T ss_pred CCccccCCC------------cceeecCCCC----cccccccCCcHHHHHHHHHHHhcCc
Confidence 489999843 3346554443 3457999998777777776666776
No 7
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=6.39 E-value=8.9e+02 Score=25.02 Aligned_cols=104 Identities=10% Similarity=-0.018 Sum_probs=60.8
Q ss_pred CCCCCeEEEEEEe-cCCCchHHHHHHHHhhcC---CcEEEEEecCCccccc--C---------CCCCceeeeeecCcccc
Q 016637 112 FKRVPKIAFMFLT-KGPLPLGPLWEKFFKGHE---GLYSIYVHSLPTFENK--F---------PSSSVFYNRQIPSQISE 176 (385)
Q Consensus 112 ~~~~~KIAfLiLa-~~p~~l~~L~~~~~~~~~---~~ysIyIHiD~~~~~~--~---------~~~~VF~~r~Ips~~V~ 176 (385)
..+.|||+.+|.+ +++..+.+.++.+..... ..+.|+| +|....+. . ..++|-+ |. .
T Consensus 176 ~~~~pkVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIV-VDNgStD~s~~~~~~e~~~~~~~~I~v---I~-~--- 247 (657)
T 4fix_A 176 APGTANIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIV-PDQGERKVRDHPDFPAAAARLGSRLSI---HD-Q--- 247 (657)
T ss_dssp CCSCCCEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEE-EECSSSCGGGSTTHHHHHHHHGGGEEE---EE-C---
T ss_pred CCCCCeEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEE-EECcCCCccchHHHHHHHHhcCCCEEE---EE-C---
Confidence 3457899999999 667788899998875221 3334444 33222210 0 0112211 21 1
Q ss_pred CCcccHHHHHHHHHHHHHhCCCCCEEEEecCCCcccCC-hHHHHHHHHh
Q 016637 177 WGKMSMCDAERRLLANALLDISNEWFILVSESCIPLYN-FSLIYHYIKK 224 (385)
Q Consensus 177 WG~~SlV~Ael~LL~~AL~d~~~dyfvLLSgsd~PL~s-~~~I~~~L~~ 224 (385)
+....-.|--++++.|....+.||+++|-..+++-.+ .+.+.+++..
T Consensus 248 -~N~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~ 295 (657)
T 4fix_A 248 -PNLGGSGGYSRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRF 295 (657)
T ss_dssp -CCCHHHHHHHHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHh
Confidence 2344566777888999886567999998877776522 2344444444
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=6.17 E-value=7.8e+02 Score=20.46 Aligned_cols=104 Identities=12% Similarity=0.077 Sum_probs=57.8
Q ss_pred CCCeEEEEEEe-cCCCchHHHHHHHHhhcCCcEEEEEecCCccccc------C--CCCCceeeeeecCccccCCcccHHH
Q 016637 114 RVPKIAFMFLT-KGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFENK------F--PSSSVFYNRQIPSQISEWGKMSMCD 184 (385)
Q Consensus 114 ~~~KIAfLiLa-~~p~~l~~L~~~~~~~~~~~ysIyIHiD~~~~~~------~--~~~~VF~~r~Ips~~V~WG~~SlV~ 184 (385)
..|+|..+|.+ +....+++.++.+.......+.|.|=-|.+-... + ..+++.+ +.. . ..+...
T Consensus 3 ~~p~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~---i~~---~--n~G~~~ 74 (240)
T 3bcv_A 3 LIPKVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKV---IHK---K--NAGLGM 74 (240)
T ss_dssp CCCSEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEE---EEC---C--CCCHHH
T ss_pred CCCcEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEE---EEC---C--CCChHH
Confidence 35789999999 6678899999999864334466666444321110 0 1223322 211 1 223445
Q ss_pred HHHHHHHHHHhCCCCCEEEEecCCCcccCC-hHHHHHHHHhCCCCc
Q 016637 185 AERRLLANALLDISNEWFILVSESCIPLYN-FSLIYHYIKKSKHSF 229 (385)
Q Consensus 185 Ael~LL~~AL~d~~~dyfvLLSgsd~PL~s-~~~I~~~L~~~~~sF 229 (385)
|--.+++.| .-+|+++|-..|++-.+ .+.+.+.+...+...
T Consensus 75 a~N~g~~~a----~g~~i~~lD~Dd~~~~~~l~~l~~~~~~~~~~~ 116 (240)
T 3bcv_A 75 ACNSGLDVA----TGEYVAFCDSDDYVDSDMYMTMYNVAQKYTCDA 116 (240)
T ss_dssp HHHHHHHHC----CSSEEEECCTTCCCCTTHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHc----CCCEEEEECCCCcCCHHHHHHHHHHHHhcCCCE
Confidence 555555544 45889988888876433 233444444433333
No 9
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=6.05 E-value=4.2e+02 Score=20.86 Aligned_cols=37 Identities=16% Similarity=-0.021 Sum_probs=26.0
Q ss_pred eecCccccCCcccHHHHHHHHHHHHHhCCCCCEEEEecCC
Q 016637 169 QIPSQISEWGKMSMCDAERRLLANALLDISNEWFILVSES 208 (385)
Q Consensus 169 ~Ips~~V~WG~~SlV~Ael~LL~~AL~d~~~dyfvLLSgs 208 (385)
++....-.||.+|.-+||..|++.. .+ -.+.|=-|++
T Consensus 17 ~~~~~~WyhG~isR~eAe~lL~~~~-~~--G~FLVR~S~~ 53 (118)
T 2el8_A 17 RALETPSCFLKVSRLEAQLLLERYP-EC--GNLLLRPSGD 53 (118)
T ss_dssp CCSSSCTTCCCCCHHHHHHHHHHSS-TT--CSBEEEECCS
T ss_pred cccCCCceecCCCHHHHHHHHhhCC-CC--cEEEEeeCCC
Confidence 3445677899999999999887654 32 3556665654
No 10
>3kdp_B Sodium/potassium-transporting ATPase subunit beta; alpha helical, heterotrimeric membrane protein complex, ATP- hydrolase, ION transport, magnesium; HET: CLR; 3.50A {Sus scrofa} PDB: 3n2f_B* 3n23_B*
Probab=5.34 E-value=4.9e+02 Score=24.41 Aligned_cols=25 Identities=8% Similarity=0.263 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhc
Q 016637 28 LRLFQLFGLFLALCIAFSLISIYSV 52 (385)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~ 52 (385)
.+++.++++|-+++.++++++++++
T Consensus 16 ~~IllFYliFY~~La~lFa~~m~v~ 40 (286)
T 3kdp_B 16 FKILLFYVIFYGCLAGIFIGTIQVM 40 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788888888887776
Done!