Query 016637
Match_columns 385
No_of_seqs 256 out of 828
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 16:56:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016637.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016637hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qg8a_ c.68.1.1 (A:) Spore co 37.7 94 0.0069 24.9 11.3 108 116-230 1-122 (255)
2 d1iioa_ a.39.4.1 (A:) Hypothet 15.0 20 0.0014 26.2 0.5 20 204-223 60-79 (84)
3 d2qalc1 d.52.3.1 (C:1-105) Rib 11.4 32 0.0023 25.8 0.8 31 260-290 18-48 (105)
4 d1d4ta_ d.93.1.1 (A:) The Xlp 9.0 1E+02 0.0075 21.7 3.0 21 172-192 3-23 (104)
5 d1phza1 d.58.18.3 (A:19-115) P 7.3 3.8E+02 0.027 18.9 6.0 29 112-140 11-40 (97)
6 d2h8pc1 f.14.1.1 (C:22-78) Pot 6.1 1.7E+02 0.012 19.1 2.7 28 27-54 4-31 (57)
7 d1rjaa_ d.93.1.1 (A:) Tyrosine 5.8 1.3E+02 0.0091 21.4 2.0 19 173-191 2-20 (100)
8 d1c9fa_ d.15.2.1 (A:) Caspase- 5.8 43 0.0031 24.4 -0.8 17 289-306 54-70 (87)
9 d1eyra_ c.68.1.13 (A:) CMP acy 5.7 3.5E+02 0.025 20.5 5.1 91 126-224 28-121 (225)
10 d2uubc1 d.52.3.1 (C:2-106) Rib 5.6 48 0.0035 24.7 -0.6 30 260-289 18-47 (105)
No 1
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis protein SpsA {Bacillus subtilis [TaxId: 1423]}
Probab=37.65 E-value=94 Score=24.87 Aligned_cols=108 Identities=11% Similarity=0.178 Sum_probs=62.5
Q ss_pred CeEEEEEEe-cCCCchHHHHHHHHhhcCCcEEEEEecCCcccc------cC-CCCCceeeeeecCccccC----CcccHH
Q 016637 116 PKIAFMFLT-KGPLPLGPLWEKFFKGHEGLYSIYVHSLPTFEN------KF-PSSSVFYNRQIPSQISEW----GKMSMC 183 (385)
Q Consensus 116 ~KIAfLiLa-~~p~~l~~L~~~~~~~~~~~ysIyIHiD~~~~~------~~-~~~~VF~~r~Ips~~V~W----G~~SlV 183 (385)
|||+.+|-+ ++..-+++.++.+....-..+.|+|+-|.+-.. .+ ...++-. +......+ ...+.-
T Consensus 1 P~vSiiip~yN~~~~l~~~l~Si~~Qt~~~~eiivvdd~S~d~t~~~l~~~~~~~~i~~---~~~~~~~~~~~~~~~g~~ 77 (255)
T d1qg8a_ 1 PKVSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEETLNVIRPFLNDNRVRF---YQSDISGVKERTEKTRYA 77 (255)
T ss_dssp CCEEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHHHHHHGGGGGSTTEEE---EECCCCSHHHHHSSCHHH
T ss_pred CEEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHhhhhccccc---ccccccccccccccchhc
Confidence 789999999 667789999999876443557888888853211 11 1122211 11111111 223333
Q ss_pred HHHHHHHHHHHhCCCCCEEEEecCCCcccCC-hHHHHHHHHhC-CCCce
Q 016637 184 DAERRLLANALLDISNEWFILVSESCIPLYN-FSLIYHYIKKS-KHSFM 230 (385)
Q Consensus 184 ~Ael~LL~~AL~d~~~dyfvLLSgsd~PL~s-~~~I~~~L~~~-~~sFI 230 (385)
.|--.+++.| +.+|++.|-+.|++..+ .+.+.+++..+ +..++
T Consensus 78 ~a~N~gi~~a----~g~~i~~lD~Dd~~~p~~l~~~~~~~~~~~~~~~v 122 (255)
T d1qg8a_ 78 ALINQAIEMA----EGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVI 122 (255)
T ss_dssp HHHHHHHHHC----CCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEE
T ss_pred cccccccccc----ccccccccccccccccchHHHHHHHHHhCCCCCeE
Confidence 3333334433 56899999999999765 34455566543 44555
No 2
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=14.96 E-value=20 Score=26.17 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=17.5
Q ss_pred EecCCCcccCChHHHHHHHH
Q 016637 204 LVSESCIPLYNFSLIYHYIK 223 (385)
Q Consensus 204 LLSgsd~PL~s~~~I~~~L~ 223 (385)
+|+++|||++|.+++.+-+.
T Consensus 60 ~l~~~DFP~ksae~lad~ii 79 (84)
T d1iioa_ 60 VLTADDFPFKSAEEVADTIV 79 (84)
T ss_dssp GSCGGGSBCSHHHHHHHHHH
T ss_pred hcCcccCCCCCHHHHHHHHH
Confidence 47899999999999988775
No 3
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.40 E-value=32 Score=25.83 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=23.9
Q ss_pred ccceeEecHHHHHHhHhcccchhHHHhhcCC
Q 016637 260 GSQWFEINRRLAVNIVEDTTYYPKFAEFCRP 290 (385)
Q Consensus 260 GSQWf~LtR~~a~~Il~d~~~~~~F~~~~~~ 290 (385)
.|.||+=.++.+++|.+|.....-..++++.
T Consensus 18 ~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~~~ 48 (105)
T d2qalc1 18 NSTWFANTKEFADNLDSDFKVRQYLTKELAK 48 (105)
T ss_dssp SCCCCCCHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred CCEEcCCccchHHHHHHHHHHHHHHHHHHHh
Confidence 6999999999999999998765444444443
No 4
>d1d4ta_ d.93.1.1 (A:) The Xlp protein Sap {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.98 E-value=1e+02 Score=21.66 Aligned_cols=21 Identities=33% Similarity=0.313 Sum_probs=17.6
Q ss_pred CccccCCcccHHHHHHHHHHH
Q 016637 172 SQISEWGKMSMCDAERRLLAN 192 (385)
Q Consensus 172 s~~V~WG~~SlV~Ael~LL~~ 192 (385)
+.+-+||.+|.-+||..|.+.
T Consensus 3 ~~pwyhG~isR~eAe~lL~~~ 23 (104)
T d1d4ta_ 3 AVAVYHGKISRETGEKLLLAT 23 (104)
T ss_dssp TCTTBCCSCCHHHHHHHHHHH
T ss_pred cCCccccCCCHHHHHHHHhhC
Confidence 456789999999999888765
No 5
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.28 E-value=3.8e+02 Score=18.87 Aligned_cols=29 Identities=14% Similarity=0.128 Sum_probs=23.5
Q ss_pred CCCCCeEEEEEEe-cCCCchHHHHHHHHhh
Q 016637 112 FKRVPKIAFMFLT-KGPLPLGPLWEKFFKG 140 (385)
Q Consensus 112 ~~~~~KIAfLiLa-~~p~~l~~L~~~~~~~ 140 (385)
.+..-|...+|.+ +.|--|..++..|-+.
T Consensus 11 ~~~~~ktSl~f~~~~~pGaL~~vL~~f~~~ 40 (97)
T d1phza1 11 SNQNGAISLIFSLKEEVGALAKVLRLFEEN 40 (97)
T ss_dssp CCSSCCEEEEEEEECCTTHHHHHHHHHHTT
T ss_pred CCCCCcEEEEEEeCCCCCHHHHHHHHHHHC
Confidence 4456689999999 7788999999998763
No 6
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.08 E-value=1.7e+02 Score=19.11 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 016637 27 PLRLFQLFGLFLALCIAFSLISIYSVRR 54 (385)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (385)
..|-+...++++++++.++...+|..-+
T Consensus 4 ~~R~~~~~~~~~~i~i~~~s~~~y~~E~ 31 (57)
T d2h8pc1 4 HWRAAGAATVLLVIVLLAGSYLAVLAER 31 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455556666666666666666676644
No 7
>d1rjaa_ d.93.1.1 (A:) Tyrosine-protein kinase 6 (Breast tumor kinase, Brk) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.80 E-value=1.3e+02 Score=21.38 Aligned_cols=19 Identities=37% Similarity=0.349 Sum_probs=15.0
Q ss_pred ccccCCcccHHHHHHHHHH
Q 016637 173 QISEWGKMSMCDAERRLLA 191 (385)
Q Consensus 173 ~~V~WG~~SlV~Ael~LL~ 191 (385)
++-.||.+|.-+||..|++
T Consensus 2 epWy~g~isR~~Ae~~L~~ 20 (100)
T d1rjaa_ 2 EPWFFGCISRSEAVRRLQA 20 (100)
T ss_dssp CCCBCTTCCHHHHHHHHSS
T ss_pred CCCcCCCCCHHHHHHHHhc
Confidence 4557899999999987643
No 8
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.78 E-value=43 Score=24.39 Aligned_cols=17 Identities=12% Similarity=0.151 Sum_probs=12.9
Q ss_pred CCCCCCCchhHHHHhhcc
Q 016637 289 RPPCYVDEHYFPTMLSIQ 306 (385)
Q Consensus 289 ~~~c~pDE~yf~TlL~n~ 306 (385)
-.|.+ ||.||+|+=.|.
T Consensus 54 DGT~V-dEeYF~tLp~nT 70 (87)
T d1c9fa_ 54 DGTEV-TDDCFPGLPNDA 70 (87)
T ss_dssp TTCCB-CTTSCSSCCTTE
T ss_pred CCcEe-cHHHHhcCCCCC
Confidence 45676 899999986664
No 9
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}
Probab=5.73 E-value=3.5e+02 Score=20.45 Aligned_cols=91 Identities=13% Similarity=0.003 Sum_probs=49.5
Q ss_pred CCCchHHHHHHHHhhcCCcEEEEEecCCc-ccccC--CCCCceeeeeecCccccCCcccHHHHHHHHHHHHHhCCCCCEE
Q 016637 126 GPLPLGPLWEKFFKGHEGLYSIYVHSLPT-FENKF--PSSSVFYNRQIPSQISEWGKMSMCDAERRLLANALLDISNEWF 202 (385)
Q Consensus 126 ~p~~l~~L~~~~~~~~~~~ysIyIHiD~~-~~~~~--~~~~VF~~r~Ips~~V~WG~~SlV~Ael~LL~~AL~d~~~dyf 202 (385)
|-.-+...++++-.-.. .-.|||=.|.+ ....+ ....++. .+....=++.+..+..+..++.. ..+++++
T Consensus 28 gkpLi~~~i~~~~~s~~-~~~Iiv~td~~~i~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~i 100 (225)
T d1eyra_ 28 GISLLGHTINAAISSKC-FDRIIVSTDGGLIAEEAKNFGVEVVL----RPAELASDTASSISGVIHALETI--GSNSGTV 100 (225)
T ss_dssp TEEHHHHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTTCEEEE----CCHHHHSTTCCHHHHHHHHHHHH--TCCSEEE
T ss_pred CeEHHHHHHHHHHHcCC-CceEEEeeccchhhhhhhhhcceeee----eccccccccccchhhcccccccc--ccccceE
Confidence 44445666666655321 11377766642 11111 1122222 11222334555666666555443 2357888
Q ss_pred EEecCCCcccCChHHHHHHHHh
Q 016637 203 ILVSESCIPLYNFSLIYHYIKK 224 (385)
Q Consensus 203 vLLSgsd~PL~s~~~I~~~L~~ 224 (385)
+.+.+.+ |+.+.+.|.+.+..
T Consensus 101 i~~~~~~-P~~~~~~I~~~i~~ 121 (225)
T d1eyra_ 101 TLLQPTS-PLRTGAHIREAFSL 121 (225)
T ss_dssp EECCTTC-TTCCHHHHHHHHTT
T ss_pred EEeeccc-ccccccccccccee
Confidence 8887666 99999999998854
No 10
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=5.64 E-value=48 Score=24.65 Aligned_cols=30 Identities=13% Similarity=0.219 Sum_probs=23.0
Q ss_pred ccceeEecHHHHHHhHhcccchhHHHhhcC
Q 016637 260 GSQWFEINRRLAVNIVEDTTYYPKFAEFCR 289 (385)
Q Consensus 260 GSQWf~LtR~~a~~Il~d~~~~~~F~~~~~ 289 (385)
.|.||+=.++.+.++.+|.....-+.++++
T Consensus 18 ~S~W~a~~~~y~~~l~eD~~IR~~i~k~~~ 47 (105)
T d2uubc1 18 ESRWYAGKKQYRHLLLEDQRIRGLLEKELY 47 (105)
T ss_dssp SCBCCCCTTTTTHHHHHHHHHHHHHHHSTT
T ss_pred CceEcCChhhhHHHHHHHHHHHHHHHhhcc
Confidence 699999899999999999876544444443
Done!