Query 016638
Match_columns 385
No_of_seqs 183 out of 757
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 08:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00083 HLH Helix-loop-helix d 99.3 4.1E-12 9E-17 93.7 5.9 53 315-367 6-60 (60)
2 smart00353 HLH helix loop heli 99.3 6.4E-12 1.4E-16 91.4 6.3 50 318-367 1-52 (53)
3 PF00010 HLH: Helix-loop-helix 99.2 1.6E-11 3.5E-16 90.8 5.7 48 316-363 4-55 (55)
4 KOG1318 Helix loop helix trans 99.1 1E-10 2.2E-15 118.8 5.4 55 314-368 234-291 (411)
5 KOG1319 bHLHZip transcription 98.6 2.3E-08 5E-13 93.6 4.2 58 317-374 66-129 (229)
6 KOG4304 Transcriptional repres 98.3 2.4E-07 5.3E-12 89.1 3.0 52 317-368 36-94 (250)
7 KOG2588 Predicted DNA-binding 98.2 8.1E-07 1.7E-11 97.7 3.1 66 312-377 275-340 (953)
8 KOG3561 Aryl-hydrocarbon recep 98.0 8.5E-06 1.8E-10 89.1 5.4 52 314-365 21-75 (803)
9 KOG2483 Upstream transcription 97.8 5.4E-05 1.2E-09 72.7 7.4 63 314-376 60-124 (232)
10 KOG3960 Myogenic helix-loop-he 97.5 0.00019 4E-09 70.2 6.5 56 318-373 123-179 (284)
11 PLN03217 transcription factor 97.3 0.00063 1.4E-08 57.3 6.4 54 322-376 16-75 (93)
12 KOG4029 Transcription factor H 97.1 0.0005 1.1E-08 64.5 3.9 57 317-373 113-172 (228)
13 KOG0561 bHLH transcription fac 96.8 0.00079 1.7E-08 67.5 3.1 52 318-369 65-117 (373)
14 KOG3910 Helix loop helix trans 92.0 0.13 2.8E-06 54.9 3.3 54 317-370 530-586 (632)
15 KOG4447 Transcription factor T 91.0 0.12 2.5E-06 48.0 1.5 48 317-365 82-131 (173)
16 KOG3558 Hypoxia-inducible fact 89.6 0.27 5.8E-06 54.2 3.1 43 319-361 52-97 (768)
17 KOG3560 Aryl-hydrocarbon recep 85.6 0.74 1.6E-05 50.0 3.5 40 321-361 33-76 (712)
18 KOG3559 Transcriptional regula 83.0 1.2 2.7E-05 47.0 3.7 43 319-361 7-52 (598)
19 KOG3898 Transcription factor N 68.5 3.5 7.6E-05 40.2 2.3 47 319-365 78-126 (254)
20 KOG4395 Transcription factor A 63.9 9.9 0.00021 38.1 4.4 49 318-366 179-229 (285)
21 PF14689 SPOB_a: Sensor_kinase 35.2 90 0.0019 24.1 4.7 41 322-370 17-57 (62)
22 COG3074 Uncharacterized protei 33.0 58 0.0013 27.2 3.5 25 352-376 13-37 (79)
23 TIGR00986 3a0801s05tom22 mitoc 32.1 28 0.00061 32.1 1.7 36 326-362 49-84 (145)
24 PF13334 DUF4094: Domain of un 30.0 84 0.0018 26.7 4.1 29 348-376 64-92 (95)
25 PRK15422 septal ring assembly 26.0 88 0.0019 26.4 3.4 24 352-375 13-36 (79)
26 PF04508 Pox_A_type_inc: Viral 25.9 74 0.0016 21.2 2.4 19 359-377 3-21 (23)
27 PF07544 Med9: RNA polymerase 25.1 1.8E+02 0.0039 23.8 5.1 44 327-376 32-78 (83)
28 PF04281 Tom22: Mitochondrial 24.2 45 0.00097 30.3 1.6 21 324-344 49-69 (137)
29 PF06005 DUF904: Protein of un 24.0 1.1E+02 0.0023 24.9 3.6 23 352-374 13-35 (72)
30 PRK13702 replication protein; 23.6 1.6E+02 0.0035 25.2 4.6 43 315-357 22-76 (85)
31 KOG4447 Transcription factor T 23.5 51 0.0011 31.1 1.8 24 320-343 29-52 (173)
32 PF08826 DMPK_coil: DMPK coile 21.5 2E+02 0.0042 23.0 4.5 51 320-376 8-58 (61)
33 PF13805 Pil1: Eisosome compon 20.9 2.1E+02 0.0044 28.9 5.5 24 321-344 143-166 (271)
No 1
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.30 E-value=4.1e-12 Score=93.65 Aligned_cols=53 Identities=36% Similarity=0.602 Sum_probs=48.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 016638 315 HPRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK 367 (385)
Q Consensus 315 ~phsiaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~QVk 367 (385)
..|+..||+||++||+.|..|+.|||.. ..+++|++||+.||+||+.|+.+++
T Consensus 6 ~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 6 EAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4589999999999999999999999999 3459999999999999999998863
No 2
>smart00353 HLH helix loop helix domain.
Probab=99.29 E-value=6.4e-12 Score=91.35 Aligned_cols=50 Identities=40% Similarity=0.676 Sum_probs=44.9
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 016638 318 SIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK 367 (385)
Q Consensus 318 siaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~QVk 367 (385)
+..||+||++||+.|..|+.|||.+ ..+++|++||++||+||+.|+.+++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999963 2348999999999999999999886
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.23 E-value=1.6e-11 Score=90.76 Aligned_cols=48 Identities=33% Similarity=0.562 Sum_probs=44.4
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhCCCC----CCCCChHHHHHHHHHHHHHHH
Q 016638 316 PRSIAERVRRTRISERMRKLQDLFPNM----DKQTNTAEMLDLAVEHIKDLQ 363 (385)
Q Consensus 316 phsiaERrRReKInerir~Lr~LVP~~----~Kq~dKAsILdeAIeYIK~LQ 363 (385)
.|+..||+||++||+.|.+|+.|||.+ ..+++|++||+.||+||+.||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 378999999999999999999999987 345999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.08 E-value=1e-10 Score=118.82 Aligned_cols=55 Identities=25% Similarity=0.515 Sum_probs=49.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhCCCCCC---CCChHHHHHHHHHHHHHHHHHHHH
Q 016638 314 THPRSIAERVRRTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVKL 368 (385)
Q Consensus 314 t~phsiaERrRReKInerir~Lr~LVP~~~K---q~dKAsILdeAIeYIK~LQ~QVk~ 368 (385)
++.|+.+|||||++||+||++|..|||.|.. +++|+.||..+++||+.||+..++
T Consensus 234 rd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~ 291 (411)
T KOG1318|consen 234 RDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQR 291 (411)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHH
Confidence 3559999999999999999999999999832 378999999999999999987773
No 5
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.64 E-value=2.3e-08 Score=93.65 Aligned_cols=58 Identities=26% Similarity=0.351 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHHHHHHHHhhhCCCCCC------CCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016638 317 RSIAERVRRTRISERMRKLQDLFPNMDK------QTNTAEMLDLAVEHIKDLQKQVKLLTDNKA 374 (385)
Q Consensus 317 hsiaERrRReKInerir~Lr~LVP~~~K------q~dKAsILdeAIeYIK~LQ~QVk~L~~~~~ 374 (385)
|.-+||+||+.|+.-...|++|||.|.. ++.||.||.++|+||.+|..++.+-+++..
T Consensus 66 HtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s 129 (229)
T KOG1319|consen 66 HTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVS 129 (229)
T ss_pred HHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999997654 378999999999999999988877665553
No 6
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.34 E-value=2.4e-07 Score=89.07 Aligned_cols=52 Identities=33% Similarity=0.630 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhhCCCCCC-------CCChHHHHHHHHHHHHHHHHHHHH
Q 016638 317 RSIAERVRRTRISERMRKLQDLFPNMDK-------QTNTAEMLDLAVEHIKDLQKQVKL 368 (385)
Q Consensus 317 hsiaERrRReKInerir~Lr~LVP~~~K-------q~dKAsILdeAIeYIK~LQ~QVk~ 368 (385)
|-+.|||||.|||+=|.+|++|||.+.| +++||+||+.||+|++.|+.....
T Consensus 36 Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 36 KPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 5699999999999999999999995543 388999999999999999976543
No 7
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=98.19 E-value=8.1e-07 Score=97.74 Aligned_cols=66 Identities=26% Similarity=0.363 Sum_probs=59.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016638 312 CATHPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCM 377 (385)
Q Consensus 312 ~at~phsiaERrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc~ 377 (385)
..+..|+++|||-|.-||+||.+|++|||+..-++.|..+|..||+||++|+...++|..+.+..+
T Consensus 275 ~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~l~ 340 (953)
T KOG2588|consen 275 EKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENASLR 340 (953)
T ss_pred cccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhhhh
Confidence 457889999999999999999999999999877799999999999999999998888876665444
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=97.96 E-value=8.5e-06 Score=89.13 Aligned_cols=52 Identities=23% Similarity=0.500 Sum_probs=48.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhCCCCC---CCCChHHHHHHHHHHHHHHHHH
Q 016638 314 THPRSIAERVRRTRISERMRKLQDLFPNMD---KQTNTAEMLDLAVEHIKDLQKQ 365 (385)
Q Consensus 314 t~phsiaERrRReKInerir~Lr~LVP~~~---Kq~dKAsILdeAIeYIK~LQ~Q 365 (385)
..+|+.+|||||+++|.=|.+|.+|||.+. .|+||-+||.+||.+||.++++
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 356899999999999999999999999987 5699999999999999998875
No 9
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.80 E-value=5.4e-05 Score=72.65 Aligned_cols=63 Identities=22% Similarity=0.387 Sum_probs=51.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhCCCCCCC-CC-hHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638 314 THPRSIAERVRRTRISERMRKLQDLFPNMDKQ-TN-TAEMLDLAVEHIKDLQKQVKLLTDNKAKC 376 (385)
Q Consensus 314 t~phsiaERrRReKInerir~Lr~LVP~~~Kq-~d-KAsILdeAIeYIK~LQ~QVk~L~~~~~kc 376 (385)
+..|+.-||+||..|.+.+..|+.+||..... .. ++.||+.|++||+.|+.+..+.....++.
T Consensus 60 R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 60 RAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 34578999999999999999999999976442 23 69999999999999998887776555543
No 10
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.52 E-value=0.00019 Score=70.20 Aligned_cols=56 Identities=21% Similarity=0.310 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHhh-hCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016638 318 SIAERVRRTRISERMRKLQD-LFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNK 373 (385)
Q Consensus 318 siaERrRReKInerir~Lr~-LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~ 373 (385)
.+-||||=.|+||-|.+|++ -+++-...+-|+.||.-||+||..||.-++++.++.
T Consensus 123 TMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 123 TMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 46799999999999999965 567777789999999999999999999998887654
No 11
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.31 E-value=0.00063 Score=57.25 Aligned_cols=54 Identities=28% Similarity=0.511 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhhCCCC------CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638 322 RVRRTRISERMRKLQDLFPNM------DKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC 376 (385)
Q Consensus 322 RrRReKInerir~Lr~LVP~~------~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc 376 (385)
|---+.|+|-+.+||.|+|.. +| ...+-||+||+.||+.|+.+|..|.+....+
T Consensus 16 risddqi~dLvsKLq~llPe~r~~r~s~k-~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 16 RISEDQINDLIIKLQQLLPELRDSRRSDK-VSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred CCCHHHHHHHHHHHHHHChHHHhhhcccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578999999999999943 33 5888999999999999999999999877543
No 12
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.08 E-value=0.0005 Score=64.47 Aligned_cols=57 Identities=26% Similarity=0.334 Sum_probs=49.6
Q ss_pred chhHHHHHHHHHHHHHHHHhhhCCC--C-CCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016638 317 RSIAERVRRTRISERMRKLQDLFPN--M-DKQTNTAEMLDLAVEHIKDLQKQVKLLTDNK 373 (385)
Q Consensus 317 hsiaERrRReKInerir~Lr~LVP~--~-~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~ 373 (385)
++..||.|=+-+|..|..||.+||. . +|++.|..+|..||.||++|++-++.-+...
T Consensus 113 ~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~~ 172 (228)
T KOG4029|consen 113 RNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAPL 172 (228)
T ss_pred hhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccCC
Confidence 4566999999999999999999994 3 6779999999999999999999887766544
No 13
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=96.83 E-value=0.00079 Score=67.48 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHH
Q 016638 318 SIAERVRRTRISERMRKLQDLFPNMD-KQTNTAEMLDLAVEHIKDLQKQVKLL 369 (385)
Q Consensus 318 siaERrRReKInerir~Lr~LVP~~~-Kq~dKAsILdeAIeYIK~LQ~QVk~L 369 (385)
+..||||=.-||--|..||.|+|--+ .|+.||.||+.+.+||..|+.+.-+|
T Consensus 65 NsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 65 NSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred cchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 44599999999999999999999542 24999999999999999998765544
No 14
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=92.02 E-value=0.13 Score=54.94 Aligned_cols=54 Identities=26% Similarity=0.353 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHHHHHHHHhhhCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 016638 317 RSIAERVRRTRISERMRKLQDLFP---NMDKQTNTAEMLDLAVEHIKDLQKQVKLLT 370 (385)
Q Consensus 317 hsiaERrRReKInerir~Lr~LVP---~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~ 370 (385)
.+..||.|=..|||.|++|.+++- +.+|--.|--||-.||.-|-.|++||.+-.
T Consensus 530 NNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 530 NNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 367799999999999999999875 344434789999999999999999998754
No 15
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=90.96 E-value=0.12 Score=48.02 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHHHHHHHHhhhCCC--CCCCCChHHHHHHHHHHHHHHHHH
Q 016638 317 RSIAERVRRTRISERMRKLQDLFPN--MDKQTNTAEMLDLAVEHIKDLQKQ 365 (385)
Q Consensus 317 hsiaERrRReKInerir~Lr~LVP~--~~Kq~dKAsILdeAIeYIK~LQ~Q 365 (385)
|++-||+|-.-+|+-|..||.++|. .+| +.|.--|..|-.||-+|=.-
T Consensus 82 anvrerqRtqsLn~AF~~lr~iiptlPsdk-lSkiqtLklA~ryidfl~~v 131 (173)
T KOG4447|consen 82 ANVRERQRTQSLNEAFAALRKIIPTLPSDK-LSKIQTLKLAARYIDFLYQV 131 (173)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhcCCCCccc-cccccchhhcccCCchhhhc
Confidence 6899999999999999999999994 466 89999999999999998543
No 16
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=89.62 E-value=0.27 Score=54.21 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCC---CCCCCChHHHHHHHHHHHHH
Q 016638 319 IAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKD 361 (385)
Q Consensus 319 iaERrRReKInerir~Lr~LVP~---~~Kq~dKAsILdeAIeYIK~ 361 (385)
-|.|.||.|=|+-|.+|..++|- ..-++|||+|+..||-|+|-
T Consensus 52 dAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 52 DAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 46899999999999999999993 33469999999999999973
No 17
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=85.61 E-value=0.74 Score=49.98 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHhhhCC----CCCCCCChHHHHHHHHHHHHH
Q 016638 321 ERVRRTRISERMRKLQDLFP----NMDKQTNTAEMLDLAVEHIKD 361 (385)
Q Consensus 321 ERrRReKInerir~Lr~LVP----~~~Kq~dKAsILdeAIeYIK~ 361 (385)
-+|-|+|+|-.+..|..|+| .+.| +||-+||..+|-|++.
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisK-LDkLSVLRLSVSyLr~ 76 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISK-LDKLSVLRLSVSYLRV 76 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhh-hhhhhhhhhhHHHHHH
Confidence 47789999999999999999 3456 9999999999999863
No 18
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=82.98 E-value=1.2 Score=47.02 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCC---CCCCCChHHHHHHHHHHHHH
Q 016638 319 IAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKD 361 (385)
Q Consensus 319 iaERrRReKInerir~Lr~LVP~---~~Kq~dKAsILdeAIeYIK~ 361 (385)
-+.|.||+|=|-.|.+|.+|+|- ++.|+||++|+..|--|||-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 45799999999999999999994 34579999999999999985
No 19
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=68.52 E-value=3.5 Score=40.21 Aligned_cols=47 Identities=23% Similarity=0.368 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHH
Q 016638 319 IAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQ 365 (385)
Q Consensus 319 iaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~Q 365 (385)
.-||.|--.+|+-+..||++||.. +.++.|...|.-|-.||..|+.-
T Consensus 78 aRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~ 126 (254)
T KOG3898|consen 78 ARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEV 126 (254)
T ss_pred chhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhccc
Confidence 448888888999999999999932 22489999999999999998753
No 20
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=63.93 E-value=9.9 Score=38.08 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHHH
Q 016638 318 SIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQV 366 (385)
Q Consensus 318 siaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~QV 366 (385)
+.-||+|=..+|.-|..|+..||.. ++++.|=..|.-|-.||-.|-...
T Consensus 179 narErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 179 NARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred chHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 4569999999999999999999955 557899999999999999886655
No 21
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.19 E-value=90 Score=24.10 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 016638 322 RVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLT 370 (385)
Q Consensus 322 RrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~ 370 (385)
|.-|=-....+.++..++--.. .++|++||+.+-.+++.++
T Consensus 17 R~~RHD~~NhLqvI~gllqlg~--------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQLGK--------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHH
Confidence 5556667778888888876543 4889999999999998884
No 22
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.04 E-value=58 Score=27.18 Aligned_cols=25 Identities=20% Similarity=0.325 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638 352 LDLAVEHIKDLQKQVKLLTDNKAKC 376 (385)
Q Consensus 352 LdeAIeYIK~LQ~QVk~L~~~~~kc 376 (385)
+..||+-|.-||..|++|++....+
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l 37 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSL 37 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 5678999999999999998776543
No 23
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=32.14 E-value=28 Score=32.12 Aligned_cols=36 Identities=14% Similarity=0.274 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHH
Q 016638 326 TRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDL 362 (385)
Q Consensus 326 eKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~L 362 (385)
|-|-|||.+|+++||.... .--.....-+..++|.+
T Consensus 49 ETl~ERi~ALkDm~Pp~~R-~~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTR-GWIYHKYSTTTNFVKST 84 (145)
T ss_pred CcHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 5678899999999997655 23444445555555443
No 24
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=30.00 E-value=84 Score=26.73 Aligned_cols=29 Identities=21% Similarity=0.173 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638 348 TAEMLDLAVEHIKDLQKQVKLLTDNKAKC 376 (385)
Q Consensus 348 KAsILdeAIeYIK~LQ~QVk~L~~~~~kc 376 (385)
...=+.++-+=|..|.+.|..|+.+++.-
T Consensus 64 i~~eV~kTh~aIq~LdKtIS~LEMELAaA 92 (95)
T PF13334_consen 64 IMGEVSKTHEAIQSLDKTISSLEMELAAA 92 (95)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344777778899999999999998754
No 25
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=25.97 E-value=88 Score=26.37 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhh
Q 016638 352 LDLAVEHIKDLQKQVKLLTDNKAK 375 (385)
Q Consensus 352 LdeAIeYIK~LQ~QVk~L~~~~~k 375 (385)
+..||+-|.-||..|++|+++...
T Consensus 13 IqqAvdtI~LLqmEieELKekn~~ 36 (79)
T PRK15422 13 VQQAIDTITLLQMEIEELKEKNNS 36 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999876543
No 26
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=25.88 E-value=74 Score=21.15 Aligned_cols=19 Identities=16% Similarity=0.427 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhhhhcc
Q 016638 359 IKDLQKQVKLLTDNKAKCM 377 (385)
Q Consensus 359 IK~LQ~QVk~L~~~~~kc~ 377 (385)
|..|+.+|..|+.++..|+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5678899999999988885
No 27
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.06 E-value=1.8e+02 Score=23.78 Aligned_cols=44 Identities=18% Similarity=0.400 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhC---CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638 327 RISERMRKLQDLF---PNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC 376 (385)
Q Consensus 327 KInerir~Lr~LV---P~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc 376 (385)
.|..||...+.+| |+++. -+++--++|+.|+++++....-..+.
T Consensus 32 ~lk~Klq~ar~~i~~lpgi~~------s~eeq~~~i~~Le~~i~~k~~~L~~~ 78 (83)
T PF07544_consen 32 SLKHKLQKARAAIRELPGIDR------SVEEQEEEIEELEEQIRKKREVLQKF 78 (83)
T ss_pred HHHHHHHHHHHHHHhCCCccC------CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555 55555 25677788999999998887766543
No 28
>PF04281 Tom22: Mitochondrial import receptor subunit Tom22 ; InterPro: IPR005683 The mitochondrial protein translocase family, which is responsible for movement of nuclear encoded pre-proteins into mitochondria, is very complex with at least 19 components. These proteins include several chaperone proteins, four proteins of the outer membrane translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family represents the Tom22 proteins []. The N-terminal region of Tom22 has been shown to have chaperone-like activity, and the C-terminal region faces the intermembrane face []. ; GO: 0006886 intracellular protein transport, 0005741 mitochondrial outer membrane
Probab=24.24 E-value=45 Score=30.32 Aligned_cols=21 Identities=29% Similarity=0.552 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHhhhCCCCCC
Q 016638 324 RRTRISERMRKLQDLFPNMDK 344 (385)
Q Consensus 324 RReKInerir~Lr~LVP~~~K 344 (385)
.-|-|-|||-+|+++||....
T Consensus 49 ~dETl~ERl~aLkdi~P~~~R 69 (137)
T PF04281_consen 49 EDETLLERLWALKDIFPPSVR 69 (137)
T ss_pred ccccHHHHHHHHhccCCHHHH
Confidence 445678889999999996544
No 29
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=24.01 E-value=1.1e+02 Score=24.91 Aligned_cols=23 Identities=30% Similarity=0.322 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 016638 352 LDLAVEHIKDLQKQVKLLTDNKA 374 (385)
Q Consensus 352 LdeAIeYIK~LQ~QVk~L~~~~~ 374 (385)
+..||+-|..||.+|.+|+.+..
T Consensus 13 i~~aveti~~Lq~e~eeLke~n~ 35 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKNN 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999999988643
No 30
>PRK13702 replication protein; Provisional
Probab=23.64 E-value=1.6e+02 Score=25.16 Aligned_cols=43 Identities=28% Similarity=0.371 Sum_probs=29.4
Q ss_pred CCchhHHHHHHH--HHHHHHHHHhhhCCCCCC----------CCChHHHHHHHHH
Q 016638 315 HPRSIAERVRRT--RISERMRKLQDLFPNMDK----------QTNTAEMLDLAVE 357 (385)
Q Consensus 315 ~phsiaERrRRe--KInerir~Lr~LVP~~~K----------q~dKAsILdeAIe 357 (385)
.|.+.+||+|.- |..+.-++|+-+||+.-| .+..|.||+..|+
T Consensus 22 ~Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 22 NPLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 788999998864 555667788888886554 1445555555554
No 31
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=23.49 E-value=51 Score=31.07 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCC
Q 016638 320 AERVRRTRISERMRKLQDLFPNMD 343 (385)
Q Consensus 320 aERrRReKInerir~Lr~LVP~~~ 343 (385)
.||.|..++++++.-|+.|+|++.
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgsp 52 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSP 52 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCC
Confidence 488999999999999999999774
No 32
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=21.54 E-value=2e+02 Score=22.96 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638 320 AERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC 376 (385)
Q Consensus 320 aERrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc 376 (385)
+|=+-+..|.+.|...+. +- .....-|++|=...+.|+.+|+.|+.+++..
T Consensus 8 ~EirakQ~~~eEL~kvk~-----~n-~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 8 AEIRAKQAIQEELTKVKS-----AN-LAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466777888888887763 23 4677889999999999999999999888654
No 33
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=20.91 E-value=2.1e+02 Score=28.93 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCCCCC
Q 016638 321 ERVRRTRISERMRKLQDLFPNMDK 344 (385)
Q Consensus 321 ERrRReKInerir~Lr~LVP~~~K 344 (385)
-|.||.+|.++|..|+.-=|...|
T Consensus 143 ~R~~r~~l~d~I~kLk~k~P~s~k 166 (271)
T PF13805_consen 143 SRDRRRKLQDEIAKLKYKDPQSPK 166 (271)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTTTT
T ss_pred HHHHhHHHHHHHHHHHhcCCCChH
Confidence 589999999999999987775433
Done!