Query 016638
Match_columns 385
No_of_seqs 183 out of 757
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 16:57:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ati_A MITF, microphthalmia-as 99.7 1.6E-16 5.5E-21 135.0 7.7 75 300-374 14-91 (118)
2 1am9_A Srebp-1A, protein (ster 99.6 1E-16 3.5E-21 128.2 4.8 64 315-378 8-71 (82)
3 4h10_B Circadian locomoter out 99.5 7.4E-15 2.5E-19 116.0 4.0 56 315-370 10-65 (71)
4 1a0a_A BHLH, protein (phosphat 99.5 1.8E-14 6.2E-19 110.7 3.6 54 314-367 3-62 (63)
5 1an4_A Protein (upstream stimu 99.5 1.5E-14 5E-19 110.2 2.6 55 313-367 5-64 (65)
6 1hlo_A Protein (transcription 99.4 1.2E-13 4.3E-18 109.3 6.9 63 315-377 14-77 (80)
7 1nkp_B MAX protein, MYC proto- 99.4 1.5E-13 5.3E-18 109.1 7.0 61 316-377 5-67 (83)
8 4h10_A ARYL hydrocarbon recept 99.4 2.2E-14 7.5E-19 113.4 1.2 50 315-364 11-63 (73)
9 1nkp_A C-MYC, MYC proto-oncoge 99.4 4.5E-13 1.5E-17 108.7 6.9 61 316-376 9-71 (88)
10 3u5v_A Protein MAX, transcript 99.3 1.3E-12 4.3E-17 104.0 4.4 57 315-371 7-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.2 1.4E-11 4.9E-16 98.5 7.5 61 316-376 4-66 (80)
12 1mdy_A Protein (MYOD BHLH doma 99.0 2.5E-10 8.5E-15 89.2 3.6 52 315-366 14-66 (68)
13 4f3l_A Mclock, circadian locom 98.9 7.4E-10 2.5E-14 105.7 6.5 52 315-366 14-65 (361)
14 2ql2_B Neurod1, neurogenic dif 98.8 4.2E-09 1.4E-13 80.3 6.0 51 317-367 6-58 (60)
15 4f3l_B BMAL1B; BHLH, PAS, circ 98.8 1.6E-09 5.3E-14 104.9 3.5 51 314-365 14-68 (387)
16 4ath_A MITF, microphthalmia-as 98.7 3.1E-08 1.1E-12 80.6 6.7 50 324-373 3-55 (83)
17 2lfh_A DNA-binding protein inh 98.4 1.9E-07 6.6E-12 73.5 4.0 47 318-364 19-67 (68)
18 4aya_A DNA-binding protein inh 97.9 2.7E-05 9.1E-10 65.0 6.7 53 321-373 33-87 (97)
19 1p3q_Q VPS9P, vacuolar protein 55.8 15 0.00051 27.6 4.3 26 319-344 3-28 (54)
20 2wt7_A Proto-oncogene protein 42.6 26 0.0009 26.1 3.9 16 321-336 1-16 (63)
21 2jee_A YIIU; FTSZ, septum, coi 40.4 24 0.00082 28.5 3.6 26 352-377 15-40 (81)
22 2ke4_A CDC42-interacting prote 36.4 58 0.002 26.7 5.4 37 340-376 52-88 (98)
23 3muj_A Transcription factor CO 31.9 64 0.0022 28.4 5.2 36 327-362 95-133 (138)
24 2jqq_A Conserved oligomeric go 31.1 32 0.0011 32.0 3.2 47 322-370 50-96 (204)
25 1f1f_A Cytochrome C6; heme, pr 30.8 99 0.0034 22.2 5.4 40 325-365 48-87 (89)
26 1hwt_C Protein (heme activator 28.5 29 0.001 25.8 2.2 24 356-379 57-80 (81)
27 2er8_A Regulatory protein Leu3 26.8 43 0.0015 24.4 2.8 20 357-376 49-68 (72)
28 1m2x_A Class B carbapenemase B 26.7 26 0.0009 29.9 1.8 32 336-368 190-221 (223)
29 1zme_C Proline utilization tra 26.2 43 0.0015 24.1 2.7 18 358-375 45-62 (70)
30 2y78_A Peptidyl-prolyl CIS-tra 25.8 20 0.00069 29.7 0.9 14 37-50 10-23 (133)
31 1dh3_A Transcription factor CR 24.3 50 0.0017 24.3 2.7 18 357-374 22-39 (55)
32 3ph2_B Cytochrome C6; photosyn 23.7 1.6E+02 0.0055 20.8 5.4 39 326-365 46-84 (86)
33 1gdv_A Cytochrome C6; RED ALGA 22.7 1.7E+02 0.0059 20.6 5.4 37 327-364 46-82 (85)
34 1a7t_A Metallo-beta-lactamase; 22.2 49 0.0017 28.4 2.7 32 336-368 200-231 (232)
35 1cyi_A Cytochrome C6, cytochro 22.0 1.8E+02 0.006 21.0 5.4 39 325-364 46-84 (90)
36 1c6r_A Cytochrome C6; electron 20.7 1.8E+02 0.0063 20.8 5.2 39 325-364 47-85 (89)
37 1gd2_E Transcription factor PA 20.1 69 0.0024 24.9 2.9 12 325-336 24-35 (70)
No 1
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.65 E-value=1.6e-16 Score=134.97 Aligned_cols=75 Identities=24% Similarity=0.375 Sum_probs=52.7
Q ss_pred CCCCccccccccCCCCCchhHHHHHHHHHHHHHHHHhhhCCCCCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 016638 300 GSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVKLLTDNKA 374 (385)
Q Consensus 300 ~svp~K~RakRg~at~phsiaERrRReKInerir~Lr~LVP~~~K---q~dKAsILdeAIeYIK~LQ~QVk~L~~~~~ 374 (385)
..++.+..+++..++.+|+++||+||++||++|.+|+.|||++.+ +++|++||++||+||++||.+++.|+++..
T Consensus 14 t~~~~~~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~~ 91 (118)
T 4ati_A 14 TESEARALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLEN 91 (118)
T ss_dssp -----------------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcchHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788888889999999999999999999999999998853 489999999999999999999999987643
No 2
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.64 E-value=1e-16 Score=128.17 Aligned_cols=64 Identities=20% Similarity=0.303 Sum_probs=59.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 016638 315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCMC 378 (385)
Q Consensus 315 ~phsiaERrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc~c 378 (385)
..|+++||+||++||++|.+|+.|||+++.+++|++||++||+||++||.+++.|+.+.+.+..
T Consensus 8 ~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 8 TAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999998555999999999999999999999999998877654
No 3
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.50 E-value=7.4e-15 Score=116.01 Aligned_cols=56 Identities=14% Similarity=0.372 Sum_probs=51.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 016638 315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLT 370 (385)
Q Consensus 315 ~phsiaERrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~ 370 (385)
.+|+++||+||++||++|.+|+.|||....++||++||++||+||+.||.++.=|+
T Consensus 10 ~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 10 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45899999999999999999999999876559999999999999999999987654
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.47 E-value=1.8e-14 Score=110.69 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=47.8
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhCCCCCC------CCChHHHHHHHHHHHHHHHHHHH
Q 016638 314 THPRSIAERVRRTRISERMRKLQDLFPNMDK------QTNTAEMLDLAVEHIKDLQKQVK 367 (385)
Q Consensus 314 t~phsiaERrRReKInerir~Lr~LVP~~~K------q~dKAsILdeAIeYIK~LQ~QVk 367 (385)
...|.++||+||++||..|.+|+.|||.+.+ +++||+||+.||+||+.||++|+
T Consensus 3 r~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp TTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 3569999999999999999999999996632 36799999999999999998764
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.46 E-value=1.5e-14 Score=110.25 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=49.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHhhhCCCCCC-----CCChHHHHHHHHHHHHHHHHHHH
Q 016638 313 ATHPRSIAERVRRTRISERMRKLQDLFPNMDK-----QTNTAEMLDLAVEHIKDLQKQVK 367 (385)
Q Consensus 313 at~phsiaERrRReKInerir~Lr~LVP~~~K-----q~dKAsILdeAIeYIK~LQ~QVk 367 (385)
....|+++||+||++||+.|.+|+.|||.+.. +++|++||++||+||+.||.+++
T Consensus 5 rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 5 RRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 34569999999999999999999999998862 48999999999999999998753
No 6
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.44 E-value=1.2e-13 Score=109.26 Aligned_cols=63 Identities=22% Similarity=0.367 Sum_probs=57.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhCCCCC-CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016638 315 HPRSIAERVRRTRISERMRKLQDLFPNMD-KQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCM 377 (385)
Q Consensus 315 ~phsiaERrRReKInerir~Lr~LVP~~~-Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc~ 377 (385)
..|+.+||+||.+||+.|..|+.|||.+. .+++|++||..||+||+.|+.++++|+.+++.++
T Consensus 14 ~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 14 AHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999873 2399999999999999999999999999887764
No 7
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.43 E-value=1.5e-13 Score=109.06 Aligned_cols=61 Identities=25% Similarity=0.396 Sum_probs=55.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016638 316 PRSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKCM 377 (385)
Q Consensus 316 phsiaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc~ 377 (385)
.|+.+||+||++||+.|..|+.+||.+ .| ++|++||.+||+||+.|+.+++.|+.+++.++
T Consensus 5 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k-~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~ 67 (83)
T 1nkp_B 5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEK-ASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999985 55 89999999999999999999999987776543
No 8
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.42 E-value=2.2e-14 Score=113.45 Aligned_cols=50 Identities=26% Similarity=0.497 Sum_probs=45.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhCCCCC---CCCChHHHHHHHHHHHHHHHH
Q 016638 315 HPRSIAERVRRTRISERMRKLQDLFPNMD---KQTNTAEMLDLAVEHIKDLQK 364 (385)
Q Consensus 315 ~phsiaERrRReKInerir~Lr~LVP~~~---Kq~dKAsILdeAIeYIK~LQ~ 364 (385)
..|+++||+||++||+.|.+|+.|||.+. .++|||+||+.||+||+.|+.
T Consensus 11 ~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 11 EAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999873 349999999999999999974
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.39 E-value=4.5e-13 Score=108.67 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=54.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhCCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638 316 PRSIAERVRRTRISERMRKLQDLFPNMD--KQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC 376 (385)
Q Consensus 316 phsiaERrRReKInerir~Lr~LVP~~~--Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc 376 (385)
.|++.||+||++||+.|..|+++||.+. ++++|++||.+||+||++|+.+++.|..+.+..
T Consensus 9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999863 348999999999999999999999887665443
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.30 E-value=1.3e-12 Score=104.02 Aligned_cols=57 Identities=30% Similarity=0.320 Sum_probs=49.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhCCC---CCCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 016638 315 HPRSIAERVRRTRISERMRKLQDLFPN---MDKQTNTAEMLDLAVEHIKDLQKQVKLLTD 371 (385)
Q Consensus 315 ~phsiaERrRReKInerir~Lr~LVP~---~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~ 371 (385)
..|+..||+||+.||+.|.+|+.+||. .+|..+|++||..||+||+.||++|++++.
T Consensus 7 ~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 7 AHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 458999999999999999999999994 455348999999999999999999998764
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.24 E-value=1.4e-11 Score=98.50 Aligned_cols=61 Identities=23% Similarity=0.276 Sum_probs=54.2
Q ss_pred CchhHHHHHHHHHHHHHHHHhhhCCCCC--CCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638 316 PRSIAERVRRTRISERMRKLQDLFPNMD--KQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC 376 (385)
Q Consensus 316 phsiaERrRReKInerir~Lr~LVP~~~--Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc 376 (385)
.|+..||+||..|++.|.+|+++||.+. .+++|++||.+||+||+.|+.+++.|..+.+..
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999652 238999999999999999999999998876654
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=98.97 E-value=2.5e-10 Score=89.17 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhCCCC-CCCCChHHHHHHHHHHHHHHHHHH
Q 016638 315 HPRSIAERVRRTRISERMRKLQDLFPNM-DKQTNTAEMLDLAVEHIKDLQKQV 366 (385)
Q Consensus 315 ~phsiaERrRReKInerir~Lr~LVP~~-~Kq~dKAsILdeAIeYIK~LQ~QV 366 (385)
..|+..||+|+..||+.|..|+++||.. +++++|+.||..||+||..|++.+
T Consensus 14 ~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 14 KAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999964 456999999999999999999865
No 13
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.94 E-value=7.4e-10 Score=105.68 Aligned_cols=52 Identities=13% Similarity=0.395 Sum_probs=42.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHH
Q 016638 315 HPRSIAERVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQV 366 (385)
Q Consensus 315 ~phsiaERrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QV 366 (385)
.+|+++||+||+|||+.|.+|+.|||....++||++||..||.|||.|+...
T Consensus 14 ~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 14 VSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 4588999999999999999999999955445999999999999999998643
No 14
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=98.84 E-value=4.2e-09 Score=80.29 Aligned_cols=51 Identities=22% Similarity=0.307 Sum_probs=46.3
Q ss_pred chhHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHHHH
Q 016638 317 RSIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVK 367 (385)
Q Consensus 317 hsiaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~QVk 367 (385)
++.-||+|+..||+.|..|+.+||.. +++++|..+|..||+||+.|++.++
T Consensus 6 ~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 6 ANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999965 4569999999999999999998764
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.80 E-value=1.6e-09 Score=104.93 Aligned_cols=51 Identities=27% Similarity=0.441 Sum_probs=45.9
Q ss_pred CCCchhHHHHHHHHHHHHHHHHhhhCC----CCCCCCChHHHHHHHHHHHHHHHHH
Q 016638 314 THPRSIAERVRRTRISERMRKLQDLFP----NMDKQTNTAEMLDLAVEHIKDLQKQ 365 (385)
Q Consensus 314 t~phsiaERrRReKInerir~Lr~LVP----~~~Kq~dKAsILdeAIeYIK~LQ~Q 365 (385)
+.+|+.+||+||+|||+.|.+|+.||| ...| +||++||..||.|||.|+..
T Consensus 14 ~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k-~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 14 REAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRK-LDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSC-CCHHHHHHHHHHHHHHHHCC
T ss_pred cccccchhhcchHHHHHHHHHHHHhcCCCCccccc-cCHHHHHHHHHHHHHHhhcc
Confidence 346999999999999999999999999 4456 99999999999999999843
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.68 E-value=3.1e-08 Score=80.62 Aligned_cols=50 Identities=26% Similarity=0.458 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhCCCCCC---CCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016638 324 RRTRISERMRKLQDLFPNMDK---QTNTAEMLDLAVEHIKDLQKQVKLLTDNK 373 (385)
Q Consensus 324 RReKInerir~Lr~LVP~~~K---q~dKAsILdeAIeYIK~LQ~QVk~L~~~~ 373 (385)
-|..||++|++|..|||.+.. +++|++||..||+||+.||+.++.+.++.
T Consensus 3 ~R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~e 55 (83)
T 4ath_A 3 MRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 55 (83)
T ss_dssp CHHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred chhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999997532 48999999999999999999888776544
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.39 E-value=1.9e-07 Score=73.52 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHH
Q 016638 318 SIAERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQK 364 (385)
Q Consensus 318 siaERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~ 364 (385)
+.-||+|...||+-|..||++||.. +++++|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 3459999999999999999999965 4569999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=97.86 E-value=2.7e-05 Score=64.98 Aligned_cols=53 Identities=21% Similarity=0.306 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHhhhCCCC--CCCCChHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016638 321 ERVRRTRISERMRKLQDLFPNM--DKQTNTAEMLDLAVEHIKDLQKQVKLLTDNK 373 (385)
Q Consensus 321 ERrRReKInerir~Lr~LVP~~--~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~ 373 (385)
||.|=..||+-|..||.+||.. ++++.|..+|..||+||+.|+..++.-....
T Consensus 33 ~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~~~~ 87 (97)
T 4aya_A 33 PMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHLKPS 87 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 5777788999999999999965 5679999999999999999999887654433
No 19
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=55.84 E-value=15 Score=27.58 Aligned_cols=26 Identities=23% Similarity=0.654 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCCCCC
Q 016638 319 IAERVRRTRISERMRKLQDLFPNMDK 344 (385)
Q Consensus 319 iaERrRReKInerir~Lr~LVP~~~K 344 (385)
.++|-+|..-.+-+..|+.+.|+.++
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 57888888999999999999999988
No 20
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.60 E-value=26 Score=26.15 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 016638 321 ERVRRTRISERMRKLQ 336 (385)
Q Consensus 321 ERrRReKInerir~Lr 336 (385)
||++|-+...++.+.+
T Consensus 1 Ekr~rrrerNR~AA~r 16 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAK 16 (63)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHH
Confidence 3444445555555554
No 21
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=40.37 E-value=24 Score=28.48 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcc
Q 016638 352 LDLAVEHIKDLQKQVKLLTDNKAKCM 377 (385)
Q Consensus 352 LdeAIeYIK~LQ~QVk~L~~~~~kc~ 377 (385)
++.||+-|.-||..|++|+.+...|.
T Consensus 15 Iq~avdtI~lLqmEieELKekN~~L~ 40 (81)
T 2jee_A 15 VQQAIDTITLLQMEIEELKEKNNSLS 40 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998876543
No 22
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=36.45 E-value=58 Score=26.66 Aligned_cols=37 Identities=16% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 016638 340 PNMDKQTNTAEMLDLAVEHIKDLQKQVKLLTDNKAKC 376 (385)
Q Consensus 340 P~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~~~~~kc 376 (385)
|..+....-..-|.++..-|..|+..+.+++..++..
T Consensus 52 P~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 52 PQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp GGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554334557788889999999999998888766543
No 23
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=31.95 E-value=64 Score=28.36 Aligned_cols=36 Identities=19% Similarity=0.348 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhhCCCC---CCCCChHHHHHHHHHHHHHH
Q 016638 327 RISERMRKLQDLFPNM---DKQTNTAEMLDLAVEHIKDL 362 (385)
Q Consensus 327 KInerir~Lr~LVP~~---~Kq~dKAsILdeAIeYIK~L 362 (385)
-|.-.|..|+++||.- ..++-|.-||..|.++++.|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4788999999999933 33588999999999998876
No 24
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=31.14 E-value=32 Score=32.03 Aligned_cols=47 Identities=21% Similarity=0.281 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 016638 322 RVRRTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKLLT 370 (385)
Q Consensus 322 RrRReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~L~ 370 (385)
.+=|.-++.=+..|+.|+-.-= .++-.++++||+|+|.|-+-+..|+
T Consensus 50 Q~v~~Dl~~F~~QL~qL~~~~i--~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 50 EKTQSDLQKFMTQLDHLIKDDI--SNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp -CHHHHHHHHHHHHHHHHHHSC--STTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446677777777887775432 4788999999999999988776554
No 25
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=30.82 E-value=99 Score=22.19 Aligned_cols=40 Identities=5% Similarity=0.184 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 016638 325 RTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQ 365 (385)
Q Consensus 325 ReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~Q 365 (385)
++.|-+.|+.-...+|...+.++... +.+.|.||+.|..+
T Consensus 48 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~~ 87 (89)
T 1f1f_A 48 VAAVAYQVTNGKNAMPGFNGRLSPLQ-IEDVAAYVVDQAEK 87 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccccCCCHHH-HHHHHHHHHHHhhc
Confidence 44555566655678887765466666 57789999998753
No 26
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=28.52 E-value=29 Score=25.75 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhccCC
Q 016638 356 VEHIKDLQKQVKLLTDNKAKCMCP 379 (385)
Q Consensus 356 IeYIK~LQ~QVk~L~~~~~kc~c~ 379 (385)
-.||..|+.+|+.|+..+.....+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l~~~ 80 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKVHSS 80 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 479999999999999888766543
No 27
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=26.79 E-value=43 Score=24.42 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhhhhhc
Q 016638 357 EHIKDLQKQVKLLTDNKAKC 376 (385)
Q Consensus 357 eYIK~LQ~QVk~L~~~~~kc 376 (385)
.||..|+.+|+.|+..++..
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l 68 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 78899999999998877654
No 28
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=26.69 E-value=26 Score=29.89 Aligned_cols=32 Identities=16% Similarity=0.224 Sum_probs=23.4
Q ss_pred hhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 016638 336 QDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKL 368 (385)
Q Consensus 336 r~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~ 368 (385)
..++|+=.... ....|+.+++|++.++++|++
T Consensus 190 ~~i~pgHg~~~-~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 190 QYVVAGHDDWK-DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp SEEEESBSCCC-STTHHHHHHHHHHHHHHTC--
T ss_pred CEEEeCCCCcC-CHHHHHHHHHHHHHHHHHHhc
Confidence 35677665544 467899999999999998864
No 29
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=26.24 E-value=43 Score=24.12 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 016638 358 HIKDLQKQVKLLTDNKAK 375 (385)
Q Consensus 358 YIK~LQ~QVk~L~~~~~k 375 (385)
||..|+.+|+.|+..++.
T Consensus 45 ~~~~L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 45 YLQQLQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555554443
No 30
>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*
Probab=25.84 E-value=20 Score=29.74 Aligned_cols=14 Identities=21% Similarity=0.067 Sum_probs=10.5
Q ss_pred CCCcccccccCchh
Q 016638 37 SDSSLTRYRSAPSS 50 (385)
Q Consensus 37 ~nsGL~RyrSAPss 50 (385)
.+|||.+++.+|-.
T Consensus 10 ~~~~~~~~~~~~~~ 23 (133)
T 2y78_A 10 HSSGLVPRGSHMTV 23 (133)
T ss_dssp --CCSGGGTTTTCC
T ss_pred ccccceecccCCCc
Confidence 68999999999843
No 31
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.32 E-value=50 Score=24.26 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 016638 357 EHIKDLQKQVKLLTDNKA 374 (385)
Q Consensus 357 eYIK~LQ~QVk~L~~~~~ 374 (385)
.||..|+.+|..|+.+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~ 39 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNK 39 (55)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566666666666665543
No 32
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=23.72 E-value=1.6e+02 Score=20.79 Aligned_cols=39 Identities=8% Similarity=0.130 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHHH
Q 016638 326 TRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQKQ 365 (385)
Q Consensus 326 eKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~Q 365 (385)
+.|-..|+.-+..+|...+.++...| ...|.||..|..+
T Consensus 46 ~~~~~~i~~g~~~Mp~~~~~ls~~ei-~~l~~yl~~~~~~ 84 (86)
T 3ph2_B 46 VAITTVVTNGKAGMPAFKGRLTDDQI-AAVAAYVLDQAEK 84 (86)
T ss_dssp HHHHHHHHHCBTTBCCCTTTSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCcccCCCHHHH-HHHHHHHHHhhhc
Confidence 34455555555688887554676664 7888999988653
No 33
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=22.70 E-value=1.7e+02 Score=20.55 Aligned_cols=37 Identities=8% Similarity=0.179 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHH
Q 016638 327 RISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364 (385)
Q Consensus 327 KInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~ 364 (385)
.|.+.|+.-...+|.....++...| .+.|.||+.|..
T Consensus 46 ~l~~~i~~g~~~Mp~~~~~ls~~ei-~~l~~yl~~~~~ 82 (85)
T 1gdv_A 46 AITYQVQNGKNAMPAFGGRLVDEDI-EDAANYVLSQSE 82 (85)
T ss_dssp HHHHHHHHCBTTBCCCTTTSCHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHhCcCCCCCCCCCCCHHHH-HHHHHHHHHHhh
Confidence 3444444444678877654666664 778999999874
No 34
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=22.17 E-value=49 Score=28.45 Aligned_cols=32 Identities=6% Similarity=0.180 Sum_probs=23.7
Q ss_pred hhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 016638 336 QDLFPNMDKQTNTAEMLDLAVEHIKDLQKQVKL 368 (385)
Q Consensus 336 r~LVP~~~Kq~dKAsILdeAIeYIK~LQ~QVk~ 368 (385)
..++|+=....+ ..+++.+++||+.|+++|.+
T Consensus 200 ~~v~pgHg~~~~-~~~~~~~~~~l~~~~~~~~~ 231 (232)
T 1a7t_A 200 RYVVPGHGNYGG-TELIEHTKQIVNQYIESTSK 231 (232)
T ss_dssp SEEEESSSCCBC-THHHHHHHHHHHHHHHHHC-
T ss_pred CEEECCCCCccc-HHHHHHHHHHHHHHHHHhcC
Confidence 457776666444 57899999999999988753
No 35
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=22.00 E-value=1.8e+02 Score=20.98 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHH
Q 016638 325 RTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364 (385)
Q Consensus 325 ReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~ 364 (385)
++.|-..|+.-...+|.....++... +.+.|.||..|..
T Consensus 46 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 84 (90)
T 1cyi_A 46 VESIIYQVENGKGAMPAWADRLSEEE-IQAVAEYVFKQAT 84 (90)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCcccccCCHHH-HHHHHHHHHhccc
Confidence 34455555555677887765466666 6788999999875
No 36
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=20.65 E-value=1.8e+02 Score=20.76 Aligned_cols=39 Identities=10% Similarity=0.130 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHHHHHHHHH
Q 016638 325 RTRISERMRKLQDLFPNMDKQTNTAEMLDLAVEHIKDLQK 364 (385)
Q Consensus 325 ReKInerir~Lr~LVP~~~Kq~dKAsILdeAIeYIK~LQ~ 364 (385)
.+.|-+.|+.-...+|...+.++... +.+.|.||+.|..
T Consensus 47 ~~~l~~~i~~g~~~Mp~~~~~ls~~e-i~~l~~yl~~~~~ 85 (89)
T 1c6r_A 47 LEAITYQVENGKGAMPAWSGTLDDDE-IAAVAAYVYDQAS 85 (89)
T ss_dssp HHHHHHHHHHCBTTBCCCTTTSCHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCcCCHHH-HHHHHHHHHHHcc
Confidence 34455555555677888765466666 5788899999875
No 37
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=20.13 E-value=69 Score=24.87 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHh
Q 016638 325 RTRISERMRKLQ 336 (385)
Q Consensus 325 ReKInerir~Lr 336 (385)
|+|=...|+.|.
T Consensus 24 ReRK~~~i~~LE 35 (70)
T 1gd2_E 24 RKRKEDHLKALE 35 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344345555554
Done!