BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016639
         (385 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3M0E|A Chain A, Crystal Structure Of The Atp-Bound State Of Walker B
           Mutant Of Ntrc1 Atpase Domain
 pdb|3M0E|B Chain B, Crystal Structure Of The Atp-Bound State Of Walker B
           Mutant Of Ntrc1 Atpase Domain
 pdb|3M0E|C Chain C, Crystal Structure Of The Atp-Bound State Of Walker B
           Mutant Of Ntrc1 Atpase Domain
 pdb|3M0E|D Chain D, Crystal Structure Of The Atp-Bound State Of Walker B
           Mutant Of Ntrc1 Atpase Domain
 pdb|3M0E|E Chain E, Crystal Structure Of The Atp-Bound State Of Walker B
           Mutant Of Ntrc1 Atpase Domain
 pdb|3M0E|F Chain F, Crystal Structure Of The Atp-Bound State Of Walker B
           Mutant Of Ntrc1 Atpase Domain
 pdb|3M0E|G Chain G, Crystal Structure Of The Atp-Bound State Of Walker B
           Mutant Of Ntrc1 Atpase Domain
          Length = 266

 Score = 31.2 bits (69), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 12/77 (15%)

Query: 155 ELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSC----LKTMALLVHDVQST 210
           EL G  +G+   AV++K G  EL          G    LD+     L+  A L+  ++S 
Sbjct: 86  ELFGYEKGAFTGAVSSKEGFFELAD--------GGTLFLDAIGELSLEAQAKLLRVIESG 137

Query: 211 ETFRTGGGPKLLVNILI 227
           + +R GG  ++ VN+ I
Sbjct: 138 KFYRLGGRKEIEVNVRI 154


>pdb|1NY6|A Chain A, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|B Chain B, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|C Chain C, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|D Chain D, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|E Chain E, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|F Chain F, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|G Chain G, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|H Chain H, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|I Chain I, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|J Chain J, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|K Chain K, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|L Chain L, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|M Chain M, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
 pdb|1NY6|N Chain N, Crystal Structure Of Sigm54 Activator (aaa+ Atpase) In The
           Active State
          Length = 267

 Score = 30.4 bits (67), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)

Query: 155 ELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSC----LKTMALLVHDVQST 210
           EL G  +G+   AV++K G  EL          G    LD      L+  A L+  ++S 
Sbjct: 87  ELFGYEKGAFTGAVSSKEGFFELAD--------GGTLFLDEIGELSLEAQAKLLRVIESG 138

Query: 211 ETFRTGGGPKLLVNILI 227
           + +R GG  ++ VN+ I
Sbjct: 139 KFYRLGGRKEIEVNVRI 155


>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
           Inactive State
 pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
           Inactive State
          Length = 387

 Score = 30.0 bits (66), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)

Query: 155 ELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSC----LKTMALLVHDVQST 210
           EL G  +G+   AV++K G  EL          G    LD      L+  A L+  ++S 
Sbjct: 207 ELFGYEKGAFTGAVSSKEGFFELAD--------GGTLFLDEIGELSLEAQAKLLRVIESG 258

Query: 211 ETFRTGGGPKLLVNILI 227
           + +R GG  ++ VN+ I
Sbjct: 259 KFYRLGGRKEIEVNVRI 275


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.134    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,303,382
Number of Sequences: 62578
Number of extensions: 385381
Number of successful extensions: 1096
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1064
Number of HSP's gapped (non-prelim): 71
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)