BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016639
(385 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6NXE6|ARMC6_HUMAN Armadillo repeat-containing protein 6 OS=Homo sapiens GN=ARMC6 PE=1
SV=2
Length = 501
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 72/313 (23%), Positives = 140/313 (44%), Gaps = 22/313 (7%)
Query: 62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS-LKDNPL 120
+ I+QE FD V+EN+E+ M P EA+++A++ QGVDLS IVK P S+ P
Sbjct: 29 KRIAQETFDAAVRENIEEFAMGPEEAVKEAVEQFESQGVDLSNIVKTAPKVSADGSQEPT 88
Query: 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS 180
L+ L L ++ + E+ + + C ++ +A + G ++ +
Sbjct: 89 HDILQMLSDL----QESVASSRPQEVSAYLTRFCDQCKQDKAC--RFLAAQKGAYPIIFT 142
Query: 181 ICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGF 240
G + +L L +++L G +LLV L ++ ++ SG
Sbjct: 143 AWKLATAGDQGLLLQSLNALSVL---TDGQPDLLDAQGLQLLVATLTQNADEADLTCSGI 199
Query: 241 AVVAASATGNEVVKESYMELKIDELILEILSR--QRNDSIQSLYDAIRVLLTPDDDQVVA 298
V + +E ++ ++ + L+ ++ D ++ A+RV+ DD +V
Sbjct: 200 RCVRHACLKHEQNRQDLVKAGVLPLLTGAITHHGHHTDVVREACWALRVMTFDDDIRV-- 257
Query: 299 SQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEICKSVAE 352
+G+A AK+ + + L+ + A L +P ++S L +A+ +E C+ V +
Sbjct: 258 --PFGHAHNHAKMIVQENKGLKVLIEATKAFLDNPGILSELCGTLSRLAIRNEFCQEVVD 315
Query: 353 NGGIDALLRCIDD 365
GG+ L+ + D
Sbjct: 316 LGGLSILVSLLAD 328
>sp|Q5RD03|ARMC6_PONAB Armadillo repeat-containing protein 6 OS=Pongo abelii GN=ARMC6 PE=2
SV=1
Length = 501
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/319 (23%), Positives = 150/319 (47%), Gaps = 34/319 (10%)
Query: 62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS----LKD 117
+ I+QE FD V+EN+E+ M P EA+++A++ QGVDLS IVK P S+
Sbjct: 29 KRIAQETFDAAVRENIEEFAMGPDEAVKEAVEQFESQGVDLSNIVKTAPKVSADGSQEPT 88
Query: 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVEL 177
+ ++Q+L L++ +S+ + E+ + + C ++ +A + G +
Sbjct: 89 HDILQTLSDLQESVASSRPQ-------EVSAYLTRFCDQCKQDKAC--RFLAAQKGAYPI 139
Query: 178 VCSICYKMRCGSKRVLDSCLKTMALLVH---DVQSTETFRTGGGPKLLVNILIDGNEDPE 234
+ + G + +L L +++L D+ T+ G +LLV L ++ +
Sbjct: 140 IFTAWKLATAGDQGLLLQSLNALSVLTDGQPDLLDTQ------GLQLLVATLTRNADEAD 193
Query: 235 ILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPD 292
+ SG V + +E ++ ++ + L+ ++ + D ++ A+RV+ D
Sbjct: 194 LTCSGIRCVRHACLKHEQNRQDLVKAGVLPLLTGAITHHGHHADVVREACCALRVMTFDD 253
Query: 293 DDQVVASQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEI 346
D +V +G+A AK+ + + L+ + A L +P ++S L +A+ +E
Sbjct: 254 DIRV----PFGHAHNHAKMIVQENKGLKVLIEATKAFLDNPGILSELCGTLSRLAIRNEF 309
Query: 347 CKSVAENGGIDALLRCIDD 365
C+ V + GG+ L+ + D
Sbjct: 310 CQEVVDLGGLSILVSLLAD 328
>sp|Q8BNU0|ARMC6_MOUSE Armadillo repeat-containing protein 6 OS=Mus musculus GN=Armc6 PE=2
SV=1
Length = 468
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 142/314 (45%), Gaps = 24/314 (7%)
Query: 62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES--SLKDNP 119
+ I+QE FD V+EN+E+ M EA+++A++ QGVDLS IVK +P S L++ P
Sbjct: 4 KRITQETFDAAVRENIEEFEMGTEEAIREAVEQFESQGVDLSNIVKTIPKVSLDGLQE-P 62
Query: 120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC 179
L+ L L ++ + L E+ + + C + S +A + G ++
Sbjct: 63 THSVLQALNDL----QESLTGSRLQEVSAHLVRFCDQCKQQKAS--RYLAAQKGAYPILL 116
Query: 180 SICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSG 239
+ +++ S + L ++ D Q G LLV L + E+ G
Sbjct: 117 A-AWQLAATSNQGLLLQALNALAVLTDGQP--DLLDAQGLHLLVATLAQNAANTELTCCG 173
Query: 240 FAVVAASATGNEVVKESYMELKIDELILEILSR--QRNDSIQSLYDAIRVLLTPDDDQVV 297
V +E ++ ++ + L+ +++ Q D ++ A+RV+ DD +V
Sbjct: 174 IRCVRHVCLKHEQNRQDLVKAGVLPLLTAAITQHGQHADVVREACWALRVMTFDDDIRV- 232
Query: 298 ASQVYGYARRFAKIGIA-----RALVHSLHAGLSSPSLISASIA-LKAVAVNDEICKSVA 351
+G+A AK+ + + L+ + A +P ++S + L +AV +E C+ V
Sbjct: 233 ---PFGHAHEHAKMIVQENKGLKVLIEAARAFSDNPGVLSELCSTLSRLAVRNEFCQEVI 289
Query: 352 ENGGIDALLRCIDD 365
+ GG+ L+ + D
Sbjct: 290 DLGGLGILVTLLAD 303
>sp|Q7K486|ARMC6_DROME Armadillo repeat-containing protein 6 homolog OS=Drosophila
melanogaster GN=CG5721 PE=1 SV=1
Length = 464
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/306 (21%), Positives = 141/306 (46%), Gaps = 16/306 (5%)
Query: 62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI 121
+ ISQ+ FD+VVKEN+ + M P+EA ++ I+ QG++L+ I+K + +
Sbjct: 3 KVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQTGQPVIN 62
Query: 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSV-NAAVATKNGGVELVCS 180
++++++K+ + L E L ++L L + S+ + +A KNG + + +
Sbjct: 63 ETVDKIKE--------HIGQKLEETTELLEQLATLDAECKKSLAHRVLAGKNGAHDALIT 114
Query: 181 ICYKMRCG---SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILN 237
+ + ++ VL L+ + L H + + F +++ +L E E+
Sbjct: 115 LLEETLSAESPNESVLKKSLEAINSLTH--KQPDLF-DAEAMAVVLKLLALKVESEEVTL 171
Query: 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297
+ + +E+ +++ M +L+ +L + ++ ++ L R L+ DD +V
Sbjct: 172 LTLQWLQKACIMHEMNRQNIMNTSALKLMKPLLGKGKDRLVRELTAVFRFLVLDDDIRVE 231
Query: 298 ASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGID 357
+ +AR+ A + LV L A L + + +AV E+C ++ E GG+
Sbjct: 232 FGCAHEHARQIAG-EVLITLVELLPAYQDPNVLADLLLTIGTLAVRQELCTAIDEAGGLK 290
Query: 358 ALLRCI 363
++ +
Sbjct: 291 SVFEIM 296
>sp|Q755N4|DBP2_ASHGO ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP2
PE=3 SV=2
Length = 557
Score = 35.0 bits (79), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 58 PKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVK---------C 108
PK +RT + F E V + +++ G E A+Q ++L G D+ G+ C
Sbjct: 110 PKPIRTFDEAGFPEYVLKEVKEEGFEKPTAIQCQGWPMALSGRDMIGVAATGSGKTLSYC 169
Query: 109 VPGESSLKDNPLI 121
+PG + PL+
Sbjct: 170 LPGIVHINAQPLL 182
>sp|A2AFR3|FRPD4_MOUSE FERM and PDZ domain-containing protein 4 OS=Mus musculus GN=Frmpd4
PE=1 SV=1
Length = 1320
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 268 EILSRQRNDSIQSLYDAIRVLLTPDDD--QVVASQVY---GYARRF-AKIGIARALVHSL 321
E+L +QRN I S D + LTPD D Q VA+ VY G + F A GI L+H +
Sbjct: 680 EMLEKQRNLYISSANDMKNLDLTPDTDSIQFVANSVYANIGDVKNFEAPEGIEEPLLHDI 739
>sp|Q8YAS0|ARCA_LISMO Arginine deiminase OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=arcA PE=3 SV=1
Length = 410
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 157 CGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG 216
CGG + V+A +G L + + +V + L++ + VH+V S+E R
Sbjct: 335 CGGEDVIVSAREQWNDGANTLAIAPGEVITYDRNQVSNDLLRSAGIKVHEVISSELSRGR 394
Query: 217 GGPKLLVNILIDGN 230
GGP+ + L+ N
Sbjct: 395 GGPRCMTMPLVREN 408
>sp|Q725C1|ARCA_LISMF Arginine deiminase OS=Listeria monocytogenes serotype 4b (strain
F2365) GN=arcA PE=3 SV=1
Length = 410
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 157 CGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG 216
CGG + V+A +G L + + +V + L++ + VH+V S+E R
Sbjct: 335 CGGEDVIVSAREQWNDGANTLAIAPGEVITYDRNQVSNDLLRSAGIKVHEVISSELSRGR 394
Query: 217 GGPKLLVNILIDGN 230
GGP+ + L+ N
Sbjct: 395 GGPRCMTMPLVREN 408
>sp|C1KV84|ARCA_LISMC Arginine deiminase OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=arcA PE=3 SV=1
Length = 410
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%)
Query: 157 CGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG 216
CGG + V+A +G L + + +V + L++ + VH+V S+E R
Sbjct: 335 CGGEDVIVSAREQWNDGANTLAIAPGEVITYDRNQVSNDLLRSAGIKVHEVISSELSRGR 394
Query: 217 GGPKLLVNILIDGN 230
GGP+ + L+ N
Sbjct: 395 GGPRCMTMPLVREN 408
>sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dbp2 PE=2 SV=2
Length = 550
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 49 DLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKC 108
++ H + PK V T + F V + ++ LG E +Q +++ G D+ GI
Sbjct: 109 EIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISAT 168
Query: 109 VPGES 113
G++
Sbjct: 169 GSGKT 173
>sp|Q92FR7|ARCA_LISIN Arginine deiminase OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=arcA PE=3 SV=1
Length = 408
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 33/74 (44%)
Query: 157 CGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG 216
CGG + V+A +G L + + V + L+ + VH+V S+E R
Sbjct: 333 CGGEDVIVSAREQWNDGANTLAIAPGEVITYDRNHVSNDLLRKAGIKVHEVISSELSRGR 392
Query: 217 GGPKLLVNILIDGN 230
GGP+ + + GN
Sbjct: 393 GGPRCMTMPITRGN 406
>sp|P31118|MTC2_PBCV1 Modification methylase CviAII OS=Paramecium bursaria Chlorella
virus 1 GN=CVIAIIM PE=3 SV=2
Length = 326
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 222 LVNIL--IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ 279
L NI+ +D + +++ GF + S GN + + ++ID +I E + R +
Sbjct: 77 LQNIIETLDDLDTKDMVIPGFVTLTYSPRGNRMYFTEDIAMRID-IIRENIERMKERVST 135
Query: 280 SLYDAIRV-LLTPDDDQVVASQVYG-YARRFAKIGIARALVHSLHAGLSSPSL 330
Y+ + LLT D S VYG Y ++F K + R + LH ++ +L
Sbjct: 136 DEYNFLLASLLTSADSVKNTSVVYGAYLKKFKKTALKRMVFAPLHTRSTTVTL 188
>sp|Q9UTR0|YL33_SCHPO Uncharacterized protein C1071.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1071.03c PE=4 SV=1
Length = 338
Score = 32.0 bits (71), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 19/147 (12%)
Query: 195 SCLKTMALLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253
S L+TM L HD++ + +L V L+DG + P + S +VV ASA N +
Sbjct: 79 SSLETMRDLAHDIKFGQDVLEQPLCDQLFV--LMDGKDYPNTIRSMSSVVLASALSNNFI 136
Query: 254 -KESYMELKIDELILEILSRQRND-------------SIQSLYDAIRVLLTPDDDQVVAS 299
++ +E+ I I+ L RQ N S+QS + ++ D +
Sbjct: 137 AQKKALEMNIMPKIVNTL-RQENHPVTLLKKLFLLSKSVQS-FPLSEAFISKDLGSAILL 194
Query: 300 QVYGYARRFAKIGIARALVHSLHAGLS 326
Q+Y + R + I I A L + LS
Sbjct: 195 QLYDFWSRNSHIDIPSAFQEKLLSRLS 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,935,468
Number of Sequences: 539616
Number of extensions: 5858799
Number of successful extensions: 18887
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 18862
Number of HSP's gapped (non-prelim): 43
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)