Query 016639
Match_columns 385
No_of_seqs 222 out of 601
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 08:40:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016639.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016639hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4199 Uncharacterized conser 100.0 7.3E-59 1.6E-63 440.3 28.7 313 60-385 1-314 (461)
2 KOG0166 Karyopherin (importin) 100.0 6.1E-40 1.3E-44 331.3 21.7 342 9-384 73-483 (514)
3 COG5064 SRP1 Karyopherin (impo 100.0 7E-38 1.5E-42 297.9 15.9 347 5-384 74-493 (526)
4 PLN03200 cellulose synthase-in 99.9 1.7E-24 3.8E-29 246.3 25.6 231 142-385 417-678 (2102)
5 PLN03200 cellulose synthase-in 99.9 5.7E-22 1.2E-26 226.0 25.9 272 77-384 410-761 (2102)
6 KOG0166 Karyopherin (importin) 99.9 2.2E-21 4.9E-26 196.8 20.0 236 123-385 195-434 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 4.1E-21 8.9E-26 183.7 14.7 305 34-385 88-396 (526)
8 KOG4199 Uncharacterized conser 99.9 2.7E-19 5.9E-24 171.0 26.1 297 67-385 74-401 (461)
9 KOG4224 Armadillo repeat prote 99.8 3E-18 6.6E-23 165.3 20.1 221 142-382 180-403 (550)
10 KOG4224 Armadillo repeat prote 99.8 1.9E-18 4.1E-23 166.7 15.9 309 40-385 50-361 (550)
11 PF05804 KAP: Kinesin-associat 99.5 9.2E-13 2E-17 140.4 23.8 200 146-366 266-465 (708)
12 PF05804 KAP: Kinesin-associat 99.4 2.9E-11 6.4E-16 129.0 23.8 227 122-385 290-518 (708)
13 KOG1048 Neural adherens juncti 99.3 1.5E-10 3.2E-15 121.8 22.4 223 142-384 246-681 (717)
14 cd00020 ARM Armadillo/beta-cat 99.3 9.5E-11 2.1E-15 96.7 13.9 116 169-289 3-119 (120)
15 cd00020 ARM Armadillo/beta-cat 99.2 2.8E-10 6.2E-15 93.8 14.4 118 212-341 2-119 (120)
16 PF04826 Arm_2: Armadillo-like 99.2 7.4E-10 1.6E-14 105.5 18.4 192 170-384 9-202 (254)
17 KOG1048 Neural adherens juncti 99.2 1.4E-10 2.9E-15 122.1 12.8 157 219-385 235-401 (717)
18 KOG2122 Beta-catenin-binding p 99.2 8.2E-10 1.8E-14 121.2 18.6 308 65-385 224-599 (2195)
19 KOG4500 Rho/Rac GTPase guanine 99.2 2.7E-09 5.9E-14 105.8 19.2 243 122-385 87-388 (604)
20 PF04826 Arm_2: Armadillo-like 99.2 6.4E-09 1.4E-13 99.1 21.2 192 122-340 12-203 (254)
21 PF03224 V-ATPase_H_N: V-ATPas 98.9 7.6E-08 1.7E-12 94.4 17.5 217 142-376 70-303 (312)
22 PF10508 Proteasom_PSMB: Prote 98.8 4.4E-07 9.6E-12 94.7 21.7 208 142-370 51-259 (503)
23 cd00256 VATPase_H VATPase_H, r 98.8 1.1E-06 2.4E-11 89.3 21.4 235 142-385 157-423 (429)
24 KOG0168 Putative ubiquitin fus 98.7 6.2E-07 1.3E-11 95.2 18.5 232 119-372 208-444 (1051)
25 PF10508 Proteasom_PSMB: Prote 98.7 6.7E-06 1.5E-10 85.9 24.7 185 142-343 90-279 (503)
26 KOG2122 Beta-catenin-binding p 98.7 8.4E-07 1.8E-11 98.3 17.7 256 60-343 318-602 (2195)
27 KOG0168 Putative ubiquitin fus 98.6 2.7E-06 5.8E-11 90.5 19.6 204 141-365 180-391 (1051)
28 PF03224 V-ATPase_H_N: V-ATPas 98.6 2.2E-06 4.8E-11 84.1 16.0 195 174-385 56-267 (312)
29 KOG4500 Rho/Rac GTPase guanine 98.5 6.1E-06 1.3E-10 82.4 17.1 213 149-376 62-287 (604)
30 KOG2160 Armadillo/beta-catenin 98.5 1.3E-05 2.8E-10 78.6 18.2 147 140-293 94-243 (342)
31 PF00514 Arm: Armadillo/beta-c 98.3 6.5E-07 1.4E-11 61.0 4.4 40 250-289 1-40 (41)
32 KOG2160 Armadillo/beta-catenin 98.3 5E-05 1.1E-09 74.6 19.1 166 188-364 95-262 (342)
33 KOG2759 Vacuolar H+-ATPase V1 98.3 8.1E-05 1.8E-09 74.3 18.5 246 123-384 157-435 (442)
34 cd00256 VATPase_H VATPase_H, r 98.2 0.00031 6.7E-09 71.7 22.5 206 142-367 67-290 (429)
35 KOG1293 Proteins containing ar 97.9 0.00046 1E-08 72.2 17.3 141 231-385 389-531 (678)
36 PF00514 Arm: Armadillo/beta-c 97.9 2.7E-05 5.9E-10 52.9 4.8 40 162-204 1-40 (41)
37 smart00185 ARM Armadillo/beta- 97.8 4E-05 8.8E-10 51.3 5.4 39 251-289 2-40 (41)
38 PRK09687 putative lyase; Provi 97.7 0.0014 3E-08 63.5 15.9 139 189-384 141-279 (280)
39 KOG1222 Kinesin associated pro 97.7 0.0014 3.1E-08 66.6 15.4 175 170-362 301-475 (791)
40 PRK09687 putative lyase; Provi 97.6 0.0069 1.5E-07 58.7 19.4 144 174-365 91-234 (280)
41 KOG1293 Proteins containing ar 97.5 0.0021 4.6E-08 67.4 14.9 187 144-343 328-534 (678)
42 KOG0946 ER-Golgi vesicle-tethe 97.5 0.012 2.6E-07 63.1 19.6 219 119-385 19-239 (970)
43 KOG3678 SARM protein (with ste 97.4 0.0045 9.8E-08 62.9 14.7 184 169-365 176-359 (832)
44 KOG0946 ER-Golgi vesicle-tethe 97.3 0.022 4.8E-07 61.2 19.6 206 139-351 132-356 (970)
45 KOG1222 Kinesin associated pro 97.3 0.0064 1.4E-07 62.0 14.0 166 189-370 276-441 (791)
46 PF05536 Neurochondrin: Neuroc 97.2 0.0089 1.9E-07 63.2 15.5 154 174-343 6-169 (543)
47 PRK13800 putative oxidoreducta 97.2 0.049 1.1E-06 61.1 21.4 170 174-384 715-896 (897)
48 KOG4646 Uncharacterized conser 97.0 0.0042 9.1E-08 53.6 8.9 132 142-289 30-161 (173)
49 PF10165 Ric8: Guanine nucleot 97.0 0.016 3.5E-07 59.8 14.3 178 197-384 2-215 (446)
50 smart00185 ARM Armadillo/beta- 96.9 0.0022 4.8E-08 42.6 5.2 39 163-204 2-40 (41)
51 PF09759 Atx10homo_assoc: Spin 96.9 0.0044 9.6E-08 50.9 7.4 67 194-260 4-71 (102)
52 PF05536 Neurochondrin: Neuroc 96.8 0.039 8.5E-07 58.4 15.9 135 220-366 8-152 (543)
53 PRK13800 putative oxidoreducta 96.8 0.22 4.7E-06 56.0 22.5 165 175-384 686-864 (897)
54 KOG4646 Uncharacterized conser 96.8 0.0077 1.7E-07 52.0 8.2 113 173-290 16-128 (173)
55 KOG2734 Uncharacterized conser 96.7 0.27 5.8E-06 50.1 19.5 244 122-384 125-397 (536)
56 PF10165 Ric8: Guanine nucleot 96.6 0.04 8.7E-07 56.9 14.1 141 150-293 2-171 (446)
57 PF01602 Adaptin_N: Adaptin N 96.4 0.19 4E-06 52.3 17.3 99 262-384 232-330 (526)
58 PF14664 RICTOR_N: Rapamycin-i 96.3 0.31 6.6E-06 49.2 18.0 197 150-366 4-200 (371)
59 KOG1789 Endocytosis protein RM 96.3 0.35 7.6E-06 53.9 18.9 139 143-289 1739-1882(2235)
60 PF06025 DUF913: Domain of Unk 96.2 0.47 1E-05 48.0 18.7 126 145-272 76-207 (379)
61 KOG2171 Karyopherin (importin) 96.2 0.19 4.2E-06 56.2 16.5 174 175-370 346-532 (1075)
62 PF08045 CDC14: Cell division 96.1 0.051 1.1E-06 51.9 10.4 90 142-235 104-194 (257)
63 PF13646 HEAT_2: HEAT repeats; 96.1 0.02 4.3E-07 44.5 6.4 88 219-338 1-88 (88)
64 PF11841 DUF3361: Domain of un 96.1 0.2 4.3E-06 44.5 13.1 122 168-289 6-130 (160)
65 PF01602 Adaptin_N: Adaptin N 96.0 0.39 8.6E-06 49.9 17.6 261 74-383 10-292 (526)
66 KOG2734 Uncharacterized conser 95.9 1.1 2.4E-05 45.8 19.2 206 145-365 100-329 (536)
67 PF13764 E3_UbLigase_R4: E3 ub 95.8 1.8 3.8E-05 48.0 21.8 232 142-383 135-405 (802)
68 KOG2759 Vacuolar H+-ATPase V1 95.7 2.4 5.2E-05 43.1 20.6 208 143-370 80-306 (442)
69 KOG3678 SARM protein (with ste 95.7 0.12 2.6E-06 53.0 11.2 139 210-361 173-314 (832)
70 PF13646 HEAT_2: HEAT repeats; 95.6 0.061 1.3E-06 41.7 7.5 86 263-382 1-87 (88)
71 COG5369 Uncharacterized conser 95.6 0.2 4.3E-06 52.1 12.9 189 165-365 423-619 (743)
72 PF13513 HEAT_EZ: HEAT-like re 95.5 0.023 4.9E-07 40.7 4.2 54 234-288 2-55 (55)
73 PF09759 Atx10homo_assoc: Spin 95.3 0.067 1.4E-06 44.0 6.8 65 147-214 4-68 (102)
74 PTZ00429 beta-adaptin; Provisi 95.3 6.1 0.00013 43.6 24.7 55 232-289 153-207 (746)
75 KOG2171 Karyopherin (importin) 95.2 1 2.2E-05 50.6 17.5 181 142-343 361-552 (1075)
76 PF06025 DUF913: Domain of Unk 95.0 1.2 2.7E-05 45.0 16.4 190 149-365 4-207 (379)
77 KOG1789 Endocytosis protein RM 95.0 0.35 7.7E-06 53.9 12.9 135 235-384 1741-1880(2235)
78 TIGR02270 conserved hypothetic 94.9 2.9 6.4E-05 42.8 18.9 90 173-289 117-206 (410)
79 PF08045 CDC14: Cell division 94.8 0.51 1.1E-05 45.2 12.3 97 232-337 104-202 (257)
80 KOG2023 Nuclear transport rece 94.5 0.34 7.4E-06 51.6 11.0 154 174-352 129-294 (885)
81 PF13764 E3_UbLigase_R4: E3 ub 94.2 1.5 3.3E-05 48.5 15.8 251 71-365 42-330 (802)
82 COG5231 VMA13 Vacuolar H+-ATPa 94.2 3.1 6.8E-05 41.0 16.1 227 147-382 167-423 (432)
83 PF14664 RICTOR_N: Rapamycin-i 93.7 2.4 5.1E-05 42.9 15.0 121 232-367 38-160 (371)
84 PF13513 HEAT_EZ: HEAT-like re 92.9 0.18 3.8E-06 35.9 4.1 54 276-340 2-55 (55)
85 PF11841 DUF3361: Domain of un 92.7 2.3 5E-05 37.8 11.6 117 255-385 5-129 (160)
86 COG5369 Uncharacterized conser 92.7 0.34 7.4E-06 50.5 7.2 139 193-342 406-545 (743)
87 PF12348 CLASP_N: CLASP N term 92.6 0.86 1.9E-05 42.1 9.4 177 188-382 19-204 (228)
88 PF06371 Drf_GBD: Diaphanous G 92.5 2.4 5.2E-05 37.7 11.9 97 148-247 83-186 (187)
89 TIGR02270 conserved hypothetic 92.4 6.3 0.00014 40.4 16.2 120 175-342 88-207 (410)
90 KOG1241 Karyopherin (importin) 92.4 4.8 0.0001 43.8 15.4 171 173-350 360-539 (859)
91 PTZ00429 beta-adaptin; Provisi 91.8 24 0.00053 39.0 23.7 99 142-248 99-208 (746)
92 PF04078 Rcd1: Cell differenti 91.8 13 0.00028 35.7 18.3 207 142-352 8-228 (262)
93 PF11698 V-ATPase_H_C: V-ATPas 91.4 0.76 1.6E-05 38.8 6.7 73 122-205 43-115 (119)
94 KOG1241 Karyopherin (importin) 91.3 2.9 6.3E-05 45.4 12.4 150 172-341 318-476 (859)
95 KOG2999 Regulator of Rac1, req 90.0 22 0.00048 37.7 17.0 154 142-298 96-252 (713)
96 PF08569 Mo25: Mo25-like; Int 89.8 23 0.00049 35.4 18.0 196 170-383 73-279 (335)
97 KOG3036 Protein involved in ce 89.4 21 0.00045 34.2 16.9 161 191-353 94-258 (293)
98 KOG2973 Uncharacterized conser 89.1 13 0.00028 36.6 13.7 107 177-294 7-115 (353)
99 PF11698 V-ATPase_H_C: V-ATPas 88.9 0.96 2.1E-05 38.2 5.3 71 218-289 44-114 (119)
100 PF05004 IFRD: Interferon-rela 88.6 26 0.00057 34.4 18.5 204 62-288 34-255 (309)
101 PF12348 CLASP_N: CLASP N term 88.3 5.7 0.00012 36.5 10.8 133 142-288 66-204 (228)
102 PF06371 Drf_GBD: Diaphanous G 87.7 1.9 4.1E-05 38.4 7.0 111 218-341 67-186 (187)
103 KOG4151 Myosin assembly protei 87.6 25 0.00055 38.5 16.2 264 74-382 418-694 (748)
104 KOG3665 ZYG-1-like serine/thre 87.0 4.8 0.0001 44.1 10.7 165 199-365 494-678 (699)
105 PF12717 Cnd1: non-SMC mitotic 86.7 11 0.00023 33.8 11.2 92 233-343 2-93 (178)
106 PF14668 RICTOR_V: Rapamycin-i 86.5 5.2 0.00011 30.8 7.7 68 277-354 3-70 (73)
107 PF11701 UNC45-central: Myosin 86.3 2.2 4.7E-05 37.6 6.4 84 192-277 59-144 (157)
108 KOG1060 Vesicle coat complex A 84.3 13 0.00028 40.8 12.0 149 120-293 285-461 (968)
109 KOG1061 Vesicle coat complex A 84.0 4.9 0.00011 43.6 8.8 105 174-292 87-191 (734)
110 PF11701 UNC45-central: Myosin 83.1 17 0.00037 31.9 10.7 136 216-365 2-139 (157)
111 KOG4413 26S proteasome regulat 82.8 55 0.0012 32.8 14.9 160 150-325 106-268 (524)
112 KOG0213 Splicing factor 3b, su 82.8 29 0.00062 38.2 13.6 131 188-331 811-943 (1172)
113 KOG1062 Vesicle coat complex A 82.6 51 0.0011 36.4 15.6 34 310-343 511-545 (866)
114 KOG1832 HIV-1 Vpr-binding prot 81.2 5 0.00011 44.5 7.5 176 168-365 596-798 (1516)
115 KOG2999 Regulator of Rac1, req 80.1 31 0.00067 36.6 12.5 151 175-340 85-240 (713)
116 KOG3665 ZYG-1-like serine/thre 79.1 1.1E+02 0.0023 33.9 17.0 47 336-385 494-541 (699)
117 PF12755 Vac14_Fab1_bd: Vacuol 78.7 29 0.00062 28.1 9.7 88 238-340 5-94 (97)
118 PF12460 MMS19_C: RNAPII trans 78.4 83 0.0018 32.1 16.7 186 176-383 192-390 (415)
119 KOG2973 Uncharacterized conser 77.4 14 0.00031 36.3 8.7 102 264-385 6-109 (353)
120 KOG0213 Splicing factor 3b, su 76.6 62 0.0014 35.7 13.7 103 119-244 880-983 (1172)
121 KOG1060 Vesicle coat complex A 76.4 1.3E+02 0.0029 33.4 17.3 217 142-385 193-456 (968)
122 KOG1058 Vesicle coat complex C 75.8 1.3E+02 0.0029 33.2 18.4 113 231-350 272-397 (948)
123 PF12719 Cnd3: Nuclear condens 75.5 75 0.0016 30.7 13.5 172 174-367 27-210 (298)
124 KOG1242 Protein containing ada 75.4 21 0.00045 38.0 9.9 182 174-385 214-399 (569)
125 PF02985 HEAT: HEAT repeat; I 75.1 5.4 0.00012 24.9 3.6 27 263-289 2-28 (31)
126 PF04063 DUF383: Domain of unk 75.0 39 0.00084 30.9 10.6 96 217-322 52-157 (192)
127 KOG4413 26S proteasome regulat 74.9 65 0.0014 32.3 12.5 164 188-364 94-265 (524)
128 PF08324 PUL: PUL domain; Int 73.7 70 0.0015 30.2 12.6 154 193-364 80-254 (268)
129 PF11864 DUF3384: Domain of un 73.3 1.2E+02 0.0026 31.5 15.9 183 87-292 86-287 (464)
130 PF06685 DUF1186: Protein of u 72.7 87 0.0019 29.9 12.7 76 171-259 71-153 (249)
131 PF02985 HEAT: HEAT repeat; I 72.4 8 0.00017 24.1 3.9 28 175-205 2-29 (31)
132 KOG1991 Nuclear transport rece 72.1 1.8E+02 0.004 33.0 17.2 117 173-293 410-535 (1010)
133 COG1413 FOG: HEAT repeat [Ener 72.0 1E+02 0.0022 30.0 17.7 94 174-290 106-209 (335)
134 KOG0301 Phospholipase A2-activ 71.8 1.6E+02 0.0034 32.2 16.1 178 118-326 541-730 (745)
135 PF07814 WAPL: Wings apart-lik 71.4 1E+02 0.0022 30.9 13.6 94 175-271 23-116 (361)
136 KOG2023 Nuclear transport rece 71.1 73 0.0016 34.7 12.6 175 122-325 128-312 (885)
137 KOG1517 Guanine nucleotide bin 70.8 1.2E+02 0.0026 34.9 14.5 168 162-343 501-672 (1387)
138 KOG3036 Protein involved in ce 70.6 1E+02 0.0022 29.6 14.1 139 234-382 94-242 (293)
139 COG5096 Vesicle coat complex, 70.0 35 0.00076 37.7 10.4 105 230-354 103-213 (757)
140 KOG2274 Predicted importin 9 [ 69.7 1.1E+02 0.0024 34.4 14.0 96 174-274 531-626 (1005)
141 KOG4151 Myosin assembly protei 69.3 58 0.0012 35.8 11.7 192 174-382 542-739 (748)
142 KOG1517 Guanine nucleotide bin 69.3 59 0.0013 37.2 11.8 187 162-352 543-742 (1387)
143 KOG2611 Neurochondrin/leucine- 68.4 1.1E+02 0.0023 32.3 12.7 117 238-364 30-162 (698)
144 PF01347 Vitellogenin_N: Lipop 68.0 1.7E+02 0.0037 31.1 15.4 169 175-383 433-618 (618)
145 PF14668 RICTOR_V: Rapamycin-i 66.8 25 0.00055 27.0 6.3 58 144-206 2-59 (73)
146 KOG0212 Uncharacterized conser 66.7 1.9E+02 0.0041 31.1 14.8 148 139-293 260-409 (675)
147 KOG2274 Predicted importin 9 [ 66.6 1.5E+02 0.0032 33.5 14.1 159 122-292 530-691 (1005)
148 KOG1788 Uncharacterized conser 66.5 96 0.0021 35.8 12.6 220 122-364 466-784 (2799)
149 COG5096 Vesicle coat complex, 64.7 29 0.00063 38.3 8.5 102 175-290 94-195 (757)
150 KOG1061 Vesicle coat complex A 64.5 2.3E+02 0.0049 31.3 15.1 124 69-207 51-191 (734)
151 KOG1242 Protein containing ada 64.1 2.1E+02 0.0045 30.7 16.1 108 167-289 289-400 (569)
152 COG5181 HSH155 U2 snRNP splice 61.5 89 0.0019 33.9 11.0 141 177-334 608-751 (975)
153 KOG1788 Uncharacterized conser 61.2 80 0.0017 36.4 10.9 206 150-366 663-962 (2799)
154 KOG0414 Chromosome condensatio 60.9 54 0.0012 37.7 9.8 114 174-297 920-1034(1251)
155 KOG1059 Vesicle coat complex A 60.9 1.9E+02 0.0042 31.9 13.4 151 122-293 181-368 (877)
156 COG1413 FOG: HEAT repeat [Ener 60.3 1.7E+02 0.0037 28.4 18.4 138 173-344 74-211 (335)
157 KOG2611 Neurochondrin/leucine- 59.7 2.3E+02 0.005 30.0 13.3 142 122-273 11-164 (698)
158 PF06972 DUF1296: Protein of u 56.5 14 0.00029 27.3 2.9 20 75-94 26-45 (60)
159 KOG1077 Vesicle coat complex A 56.3 2.3E+02 0.0049 31.3 13.0 112 189-309 124-237 (938)
160 KOG1820 Microtubule-associated 55.7 3E+02 0.0064 31.0 14.4 169 83-288 269-441 (815)
161 PF04063 DUF383: Domain of unk 55.4 50 0.0011 30.2 7.3 108 276-384 10-129 (192)
162 PF01402 RHH_1: Ribbon-helix-h 55.1 23 0.0005 23.0 3.8 34 63-97 5-38 (39)
163 KOG1248 Uncharacterized conser 52.1 4.2E+02 0.0092 30.9 14.9 140 143-293 711-859 (1176)
164 COG5215 KAP95 Karyopherin (imp 51.8 3.5E+02 0.0075 29.4 15.9 173 142-324 147-333 (858)
165 PF04821 TIMELESS: Timeless pr 51.3 2.3E+02 0.0049 27.1 15.1 139 166-324 33-190 (266)
166 COG5181 HSH155 U2 snRNP splice 50.9 3.6E+02 0.0077 29.5 13.3 102 119-243 685-787 (975)
167 PF09324 DUF1981: Domain of un 50.8 75 0.0016 25.0 6.7 70 311-384 16-85 (86)
168 PHA01748 hypothetical protein 50.5 28 0.0006 25.6 3.9 36 60-96 5-40 (60)
169 PF12231 Rif1_N: Rap1-interact 50.3 2.7E+02 0.0059 27.9 12.3 97 189-290 59-163 (372)
170 PRK14707 hypothetical protein; 48.8 6.5E+02 0.014 31.7 16.4 151 214-381 328-481 (2710)
171 PF08216 CTNNBL: Catenin-beta- 47.9 29 0.00064 28.8 4.0 42 330-375 63-104 (108)
172 PF12031 DUF3518: Domain of un 47.6 47 0.001 31.7 5.8 80 235-324 140-228 (257)
173 PF08167 RIX1: rRNA processing 46.1 1.6E+02 0.0034 26.0 8.8 109 262-384 26-140 (165)
174 PF12755 Vac14_Fab1_bd: Vacuol 45.5 1.2E+02 0.0027 24.4 7.3 29 313-342 28-56 (97)
175 COG5215 KAP95 Karyopherin (imp 44.0 3.6E+02 0.0079 29.2 12.0 147 171-341 319-478 (858)
176 COG5116 RPN2 26S proteasome re 43.8 1.5E+02 0.0033 31.9 9.3 86 189-290 565-650 (926)
177 KOG4535 HEAT and armadillo rep 43.6 1E+02 0.0022 32.5 7.8 141 191-344 448-605 (728)
178 KOG1824 TATA-binding protein-i 43.4 3E+02 0.0065 31.5 11.7 75 262-347 967-1041(1233)
179 PF05004 IFRD: Interferon-rela 42.1 3.4E+02 0.0074 26.5 17.3 179 142-340 56-255 (309)
180 COG5209 RCD1 Uncharacterized p 41.1 2E+02 0.0043 27.4 8.7 136 236-380 117-277 (315)
181 smart00638 LPD_N Lipoprotein N 40.7 4.7E+02 0.01 27.7 20.1 214 77-338 317-541 (574)
182 KOG2676 Uncharacterized conser 40.4 2.4E+02 0.0052 28.7 9.6 129 144-292 300-431 (478)
183 PF15127 DUF4565: Protein of u 40.3 28 0.00061 27.8 2.6 31 72-105 53-83 (91)
184 PF12031 DUF3518: Domain of un 40.1 3.2E+02 0.007 26.2 10.1 143 89-273 76-228 (257)
185 smart00288 VHS Domain present 39.2 1.2E+02 0.0027 25.6 6.8 67 314-383 39-107 (133)
186 KOG1059 Vesicle coat complex A 39.1 4.8E+02 0.01 29.0 12.2 62 222-290 149-210 (877)
187 KOG1062 Vesicle coat complex A 38.4 6.2E+02 0.013 28.4 17.0 149 118-293 102-266 (866)
188 PF05918 API5: Apoptosis inhib 38.4 5.3E+02 0.012 27.7 15.4 88 148-275 23-110 (556)
189 KOG1640 Predicted steroid redu 37.6 11 0.00023 36.6 -0.1 11 3-13 62-72 (304)
190 KOG1832 HIV-1 Vpr-binding prot 37.5 1.2E+02 0.0026 34.3 7.7 99 188-299 674-782 (1516)
191 COG4423 Uncharacterized protei 37.4 51 0.0011 25.9 3.7 29 65-94 7-35 (81)
192 PRK09169 hypothetical protein; 37.2 7.9E+02 0.017 31.1 14.7 60 93-157 494-554 (2316)
193 KOG1077 Vesicle coat complex A 36.6 6.4E+02 0.014 28.1 19.3 197 69-323 211-415 (938)
194 KOG0212 Uncharacterized conser 36.3 2.9E+02 0.0062 29.7 9.9 74 166-248 370-444 (675)
195 PF08569 Mo25: Mo25-like; Int 36.3 4.5E+02 0.0097 26.2 15.6 217 140-370 87-313 (335)
196 PF04821 TIMELESS: Timeless pr 36.0 4E+02 0.0086 25.5 14.3 102 265-366 45-190 (266)
197 PF12830 Nipped-B_C: Sister ch 36.0 3.2E+02 0.007 24.5 10.0 116 123-258 9-132 (187)
198 KOG2137 Protein kinase [Signal 35.0 2.5E+02 0.0055 30.8 9.6 133 122-275 389-522 (700)
199 PHA01623 hypothetical protein 34.8 69 0.0015 23.2 3.8 33 62-95 18-50 (56)
200 TIGR02384 RelB_DinJ addiction 34.8 88 0.0019 24.5 4.8 39 63-102 8-47 (83)
201 PF08454 RIH_assoc: RyR and IP 34.8 1.5E+02 0.0034 24.4 6.4 42 231-272 65-107 (109)
202 COG5611 Predicted nucleic-acid 34.4 38 0.00083 28.5 2.7 82 10-105 11-99 (130)
203 PF12717 Cnd1: non-SMC mitotic 34.2 3.3E+02 0.0071 24.0 14.3 89 144-249 3-93 (178)
204 cd03569 VHS_Hrs_Vps27p VHS dom 33.9 2.6E+02 0.0056 24.1 8.0 73 122-204 41-113 (142)
205 cd03569 VHS_Hrs_Vps27p VHS dom 32.8 1.7E+02 0.0038 25.2 6.8 67 314-384 43-111 (142)
206 COG5589 Uncharacterized conser 32.6 30 0.00065 30.1 1.8 19 81-99 94-112 (164)
207 KOG3946 Glutaminyl cyclase [Po 31.9 31 0.00068 33.6 2.1 51 6-57 232-304 (338)
208 PF01365 RYDR_ITPR: RIH domain 31.6 2.4E+02 0.0051 25.6 7.9 139 120-274 2-155 (207)
209 COG5231 VMA13 Vacuolar H+-ATPa 30.1 89 0.0019 31.2 4.8 73 122-205 356-428 (432)
210 PF12960 DUF3849: Protein of u 30.0 60 0.0013 28.0 3.3 28 67-95 31-58 (133)
211 PF02268 TFIIA_gamma_N: Transc 30.0 28 0.0006 24.7 1.0 23 66-88 16-48 (49)
212 PF08563 P53_TAD: P53 transact 29.8 12 0.00026 22.6 -0.7 12 62-73 8-19 (25)
213 cd03561 VHS VHS domain family; 29.4 2.6E+02 0.0056 23.6 7.2 69 314-384 39-109 (133)
214 PF08216 CTNNBL: Catenin-beta- 29.3 71 0.0015 26.5 3.5 38 145-185 62-99 (108)
215 PF09288 UBA_3: Fungal ubiquit 28.8 13 0.00029 26.9 -0.7 15 89-103 10-24 (55)
216 cd03568 VHS_STAM VHS domain fa 28.5 2.2E+02 0.0048 24.6 6.7 67 314-384 39-107 (144)
217 PF14225 MOR2-PAG1_C: Cell mor 28.5 5.3E+02 0.012 24.7 15.1 137 162-324 100-240 (262)
218 PF14663 RasGEF_N_2: Rapamycin 28.3 1.7E+02 0.0038 24.2 5.8 41 218-261 9-49 (115)
219 PRK14707 hypothetical protein; 28.1 1.3E+03 0.029 29.2 16.3 216 145-382 222-440 (2710)
220 PF11864 DUF3384: Domain of un 28.0 2.6E+02 0.0057 29.0 8.3 139 142-289 170-329 (464)
221 KOG2152 Sister chromatid cohes 27.8 2E+02 0.0043 31.8 7.3 67 314-382 334-403 (865)
222 PF13925 Katanin_con80: con80 27.3 3.8E+02 0.0082 23.6 8.1 53 308-365 24-80 (164)
223 cd03567 VHS_GGA VHS domain fam 27.1 3.2E+02 0.007 23.5 7.4 69 314-383 40-112 (139)
224 KOG2259 Uncharacterized conser 27.0 2.8E+02 0.006 30.4 8.1 146 167-344 367-513 (823)
225 KOG4464 Signaling protein RIC- 26.9 7.4E+02 0.016 25.8 11.7 154 176-340 48-226 (532)
226 PF13040 DUF3901: Protein of u 26.9 44 0.00096 22.7 1.5 19 67-85 6-24 (40)
227 KOG2062 26S proteasome regulat 26.7 2.3E+02 0.005 31.5 7.5 84 189-289 568-652 (929)
228 PF14726 RTTN_N: Rotatin, an a 26.5 3.5E+02 0.0076 21.9 7.1 66 316-385 31-98 (98)
229 KOG0301 Phospholipase A2-activ 26.2 9.1E+02 0.02 26.6 18.2 171 190-381 558-740 (745)
230 KOG2032 Uncharacterized conser 26.1 6.7E+02 0.015 26.5 10.5 147 217-383 254-412 (533)
231 PF07814 WAPL: Wings apart-lik 26.1 3.3E+02 0.0071 27.3 8.4 56 314-369 23-78 (361)
232 KOG1991 Nuclear transport rece 25.9 1.1E+03 0.023 27.3 20.0 74 175-253 464-537 (1010)
233 cd03565 VHS_Tom1 VHS domain fa 25.4 4.2E+02 0.009 22.8 7.8 70 314-384 40-112 (141)
234 PF14500 MMS19_N: Dos2-interac 25.4 6E+02 0.013 24.2 12.6 134 188-341 11-152 (262)
235 PF04078 Rcd1: Cell differenti 24.9 6.3E+02 0.014 24.3 13.5 135 234-381 65-212 (262)
236 PF08454 RIH_assoc: RyR and IP 24.8 2.6E+02 0.0057 23.0 6.2 84 96-184 22-107 (109)
237 PF07923 N1221: N1221-like pro 24.1 2.2E+02 0.0048 27.5 6.6 32 173-207 60-91 (293)
238 COG5110 RPN1 26S proteasome re 24.0 3E+02 0.0065 29.6 7.6 153 211-368 41-221 (881)
239 COG5240 SEC21 Vesicle coat com 23.7 9.8E+02 0.021 26.1 15.1 143 122-289 260-403 (898)
240 PF01365 RYDR_ITPR: RIH domain 23.6 1.2E+02 0.0026 27.5 4.4 100 213-324 39-154 (207)
241 PRK11235 bifunctional antitoxi 23.5 1.8E+02 0.004 22.7 4.7 39 64-103 8-47 (80)
242 PF08506 Cse1: Cse1; InterPro 23.5 7.7E+02 0.017 24.8 12.3 51 231-285 320-370 (370)
243 KOG1924 RhoA GTPase effector D 23.3 1.1E+03 0.023 26.7 11.7 140 145-288 157-314 (1102)
244 KOG2137 Protein kinase [Signal 22.7 1.1E+03 0.023 26.2 15.4 172 142-341 286-457 (700)
245 PF04564 U-box: U-box domain; 22.6 49 0.0011 25.0 1.3 23 75-97 47-69 (73)
246 PF08383 Maf_N: Maf N-terminal 22.5 51 0.0011 21.6 1.1 17 76-92 17-33 (35)
247 PF05918 API5: Apoptosis inhib 22.3 4.9E+02 0.011 27.9 9.0 67 122-205 59-125 (556)
248 KOG2933 Uncharacterized conser 22.1 7.1E+02 0.015 24.8 9.4 146 65-245 71-216 (334)
249 KOG2956 CLIP-associating prote 22.0 9.5E+02 0.021 25.3 13.8 142 122-289 329-476 (516)
250 PF04181 RPAP2_Rtr1: Rtr1/RPAP 21.5 54 0.0012 25.2 1.4 17 60-76 1-17 (79)
251 KOG0413 Uncharacterized conser 21.2 1.3E+03 0.029 26.8 13.8 67 149-228 617-686 (1529)
252 PF07923 N1221: N1221-like pro 21.0 2.4E+02 0.0052 27.3 6.1 62 263-324 62-128 (293)
253 KOG4535 HEAT and armadillo rep 20.8 4.4E+02 0.0095 28.0 8.0 143 236-385 408-557 (728)
254 KOG2073 SAP family cell cycle 20.7 5.7E+02 0.012 28.9 9.4 65 306-370 184-255 (838)
255 cd03567 VHS_GGA VHS domain fam 20.5 5.5E+02 0.012 22.0 8.0 73 122-202 38-113 (139)
256 cd03561 VHS VHS domain family; 20.5 5.2E+02 0.011 21.7 9.0 75 122-204 37-111 (133)
257 KOG3463 Transcription initiati 20.4 68 0.0015 26.5 1.7 30 65-94 16-55 (109)
258 PF04221 RelB: RelB antitoxin; 20.2 1.9E+02 0.0041 22.4 4.3 39 63-102 7-46 (83)
259 KOG1240 Protein kinase contain 20.2 1.5E+03 0.032 27.0 15.0 241 8-289 466-724 (1431)
260 PF13251 DUF4042: Domain of un 20.1 6.5E+02 0.014 22.7 8.6 67 315-383 104-170 (182)
No 1
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.3e-59 Score=440.32 Aligned_cols=313 Identities=36% Similarity=0.554 Sum_probs=290.0
Q ss_pred hhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCC
Q 016639 60 TVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFS 139 (385)
Q Consensus 60 ~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~ 139 (385)
++|+|+|+|||.+|+|||++|.|.|+||.+++|+||++||+||+||+|+.|.....+...+...++++++.+.+
T Consensus 1 ~~K~i~q~tfd~~v~eni~ef~m~peea~~e~I~qfe~qgi~l~nIik~~sv~~~~~qp~i~~~~~~i~e~i~~------ 74 (461)
T KOG4199|consen 1 MAKVISQDTFDDVVKENVVEFSMTPSEAKEETIKQFEAQGINLANIIKDLSVNPQTGQPVINETVDKIKEHIGQ------ 74 (461)
T ss_pred CchhHhHHHHHHHHHHHHHHHhcCccccchHHHHHHHhccCcccccccccCCCCCCCCccHHHhHHHHHHHHHh------
Confidence 46899999999999999999999999999999999999999999999998854333322344788888888774
Q ss_pred cccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCc
Q 016639 140 DEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGP 219 (385)
Q Consensus 140 ~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi 219 (385)
-++++.+.+..|...|++ +.++|..++++|+++.++-++...+.++..++-++|.+|..++.++ +++.++.|+
T Consensus 75 --~~~E~s~ll~~l~d~ck~--~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q---pdl~da~g~ 147 (461)
T KOG4199|consen 75 --KLEETTELLEQLADECKK--SLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ---PDLFDAEAM 147 (461)
T ss_pred --hhHHHHHHHHHHHHHHhh--hHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC---cchhccccH
Confidence 689999999999999998 9999999999999999999887655567888989999999988876 899999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC-hHHHHHHHHHHHHhcCCCccchhh
Q 016639 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVA 298 (385)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~-~~v~k~A~~aL~~Lt~~Dd~rv~~ 298 (385)
..++.+|....++.++...+++|+.++|.+||.|||.||+.++++++.+.|.+++ .++++++||++|.|++|||+||+|
T Consensus 148 ~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~f 227 (461)
T KOG4199|consen 148 AVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVF 227 (461)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeec
Confidence 9999999999999999999999999999999999999999999999998887654 479999999999999999999999
Q ss_pred hhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHH
Q 016639 299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC 378 (385)
Q Consensus 299 g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a 378 (385)
|++|+|+|+|++.|++..|+++|+.+.+++++.++|.+|+.||+|+|+|++|+|.|||+.|+++|.++.+++++.++|+|
T Consensus 228 g~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~ 307 (461)
T KOG4199|consen 228 GQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTC 307 (461)
T ss_pred chhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcC
Q 016639 379 CSLLSKV 385 (385)
Q Consensus 379 ~~~Lr~l 385 (385)
|++||+|
T Consensus 308 lslLral 314 (461)
T KOG4199|consen 308 LSLLRAL 314 (461)
T ss_pred HHHHHHH
Confidence 9999986
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.1e-40 Score=331.31 Aligned_cols=342 Identities=16% Similarity=0.221 Sum_probs=290.1
Q ss_pred hcccCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCc----hhhhhhhHHHHHHHHHh
Q 016639 9 YKHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDEVVKE 75 (385)
Q Consensus 9 ~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isqetfd~~v~e 75 (385)
-+-||++.+.|+.++++ ||++++|| +.|+||.+|.||.|.+++.+||+++ ++++..|++| -.||..
T Consensus 73 ~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T-~~vv~a 151 (514)
T KOG0166|consen 73 AALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT-KVVVDA 151 (514)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc-cccccC
Confidence 35689999999999999 99999999 7799999999999999999999998 8999888888 999999
Q ss_pred h-----HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCC-----------------------------------
Q 016639 76 N-----MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSL----------------------------------- 115 (385)
Q Consensus 76 n-----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~----------------------------------- 115 (385)
| |..+.-...+..++|| |.|+||++++|..++.
T Consensus 152 gavp~fi~Ll~s~~~~v~eQav-------WALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcr 224 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAV-------WALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCR 224 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHH-------HHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHc
Confidence 9 4445666666668999 9999999888775332
Q ss_pred C--Cch----HHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCc
Q 016639 116 K--DNP----LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGS 189 (385)
Q Consensus 116 ~--~~~----v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d 189 (385)
+ -+| +..+|..|...+-.. |.+.+..++|+|+++.++ .++.-....+.|.+|.||.+|.+. +
T Consensus 225 gk~P~P~~~~v~~iLp~L~~ll~~~-------D~~Vl~Da~WAlsyLsdg--~ne~iq~vi~~gvv~~LV~lL~~~---~ 292 (514)
T KOG0166|consen 225 GKNPSPPFDVVAPILPALLRLLHST-------DEEVLTDACWALSYLTDG--SNEKIQMVIDAGVVPRLVDLLGHS---S 292 (514)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHhcC--ChHHHHHHHHccchHHHHHHHcCC---C
Confidence 0 011 112333333333333 788999999999999998 888888899999999999999984 6
Q ss_pred HhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639 190 KRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (385)
Q Consensus 190 ~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~ 268 (385)
..++.+||++++|+++|++. ++.+++.|+++.|..+|..+ ....+.++|||+|+|+++|+.+++++|+++|.+|.|+.
T Consensus 293 ~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s-~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 293 PKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSS-PKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred cccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccC-cchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH
Confidence 77899999999999999887 69999999999999999853 34568999999999999999999999999999999999
Q ss_pred HHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh-------
Q 016639 269 ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA------- 341 (385)
Q Consensus 269 lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La------- 341 (385)
+|+++..+.+|+|||+|.|++. |+++++.+++++.|+|+|+|++|.. .|..++..++.+|.++-
T Consensus 372 ~l~~~ef~~rKEAawaIsN~ts--------~g~~~qi~yLv~~giI~plcdlL~~-~D~~ii~v~Ld~l~nil~~~e~~~ 442 (514)
T KOG0166|consen 372 LLQTAEFDIRKEAAWAISNLTS--------SGTPEQIKYLVEQGIIKPLCDLLTC-PDVKIILVALDGLENILKVGEAEK 442 (514)
T ss_pred HHhccchHHHHHHHHHHHhhcc--------cCCHHHHHHHHHcCCchhhhhcccC-CChHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999994 7778999999999999999999955 47666677777777762
Q ss_pred cC--hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 342 VN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 342 ~~--~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
.. ++.+..|+++||++++ +.|+. |+|.++++.|+++|.+
T Consensus 443 ~~~~n~~~~~IEe~ggldki-E~LQ~---hen~~Iy~~A~~II~~ 483 (514)
T KOG0166|consen 443 NRGTNPLAIMIEEAGGLDKI-ENLQS---HENEEIYKKAYKIIDT 483 (514)
T ss_pred cccccHHHHHHHHccChhHH-HHhhc---cccHHHHHHHHHHHHH
Confidence 11 7899999999999999 55666 5667999999999864
No 3
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=100.00 E-value=7e-38 Score=297.95 Aligned_cols=347 Identities=16% Similarity=0.173 Sum_probs=285.1
Q ss_pred cchhhcccCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCc----hhhhhhhHHHHHH
Q 016639 5 PKSYYKHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDE 71 (385)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isqetfd~ 71 (385)
|+---.-||++.|.|+|++-+ ||+|-+|| ..|.||+||+|+.......+||+++ +++++.||+| .-
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT-kv 152 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT-KV 152 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce-EE
Confidence 444445799999999999988 99999999 8899999999999999999999988 8999999999 77
Q ss_pred HHHhh-----HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCC-----CCchHHH-------------------
Q 016639 72 VVKEN-----MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSL-----KDNPLIQ------------------- 122 (385)
Q Consensus 72 ~v~en-----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~-----~~~~v~~------------------- 122 (385)
||..+ |..+.-+-.+..+++| |.|+||..|++++++. .-.|++.
T Consensus 153 Vvd~~AVPlfiqlL~s~~~~V~eQav-------WALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 153 VVDAGAVPLFIQLLSSTEDDVREQAV-------WALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred EEeCCchHHHHHHHcCchHHHHHHHH-------HHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Confidence 77766 7777777778889999 9999999998887554 1122221
Q ss_pred ------------------HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhc
Q 016639 123 ------------------SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYK 184 (385)
Q Consensus 123 ------------------al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~ 184 (385)
++.-|..++-. -+++.+..|+|++++++.+ ..+....+.+.|..+.||++|.+
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KLiys-------~D~evlvDA~WAiSYlsDg--~~E~i~avld~g~~~RLvElLs~ 296 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKLIYS-------RDPEVLVDACWAISYLSDG--PNEKIQAVLDVGIPGRLVELLSH 296 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHHhccC--cHHHHHHHHhcCCcHHHHHHhcC
Confidence 11112222211 2678999999999999998 67777788999999999999998
Q ss_pred ccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 016639 185 MRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKID 263 (385)
Q Consensus 185 ~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i 263 (385)
.+..++.+|++.++|+.+|++. ++.++++|.++.+-.+|.+. ...+.+++||.|+|+++||-++.+.+++++.+
T Consensus 297 ---~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~--ke~irKEaCWTiSNITAGnteqiqavid~nli 371 (526)
T COG5064 297 ---ESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP--KENIRKEACWTISNITAGNTEQIQAVIDANLI 371 (526)
T ss_pred ---ccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh--hhhhhhhhheeecccccCCHHHHHHHHhcccc
Confidence 4788999999999999999887 69999999999999999864 34899999999999999999999999999999
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh--
Q 016639 264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-- 341 (385)
Q Consensus 264 ~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La-- 341 (385)
|+|+++|........|+|||++.|++..--.| ++..|++++.|+|+||+++|....++ +.+-++-++.+.-
T Consensus 372 PpLi~lls~ae~k~kKEACWAisNatsgg~~~------PD~iryLv~qG~IkpLc~~L~~~dNk-iiev~LD~~eniLk~ 444 (526)
T COG5064 372 PPLIHLLSSAEYKIKKEACWAISNATSGGLNR------PDIIRYLVSQGFIKPLCDLLDVVDNK-IIEVALDAIENILKV 444 (526)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccccCC------chHHHHHHHccchhHHHHHHhccCcc-chhhhHHHHHHHHhh
Confidence 99999999998899999999999998654443 37899999999999999999886454 3333444444431
Q ss_pred ---------cC-hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 342 ---------VN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 342 ---------~~-~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
.+ |.+...++++||++.+..+..+ .|..++..|.++|.+
T Consensus 445 Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s----~n~~iy~KAYsIIe~ 493 (526)
T COG5064 445 GEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDS----VNRTIYDKAYSIIEK 493 (526)
T ss_pred hhHHHHhccCCccHHHHHHHhcccHHHHHHhhhc----cccHHHHHHHHHHHH
Confidence 12 4677888889999999887654 445899999998864
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.93 E-value=1.7e-24 Score=246.28 Aligned_cols=231 Identities=16% Similarity=0.186 Sum_probs=191.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPK 220 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~ 220 (385)
+.+.+.+++|.|+++|++ +.++|..+.+.|++|.|+++|++ ++..++..|+++|++|+.+++. +..++++||||
T Consensus 417 ~~evQ~~Av~aL~~L~~~--~~e~~~aIi~~ggIp~LV~LL~s---~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP 491 (2102)
T PLN03200 417 TADVQEELIRALSSLCCG--KGGLWEALGGREGVQLLISLLGL---SSEQQQEYAVALLAILTDEVDESKWAITAAGGIP 491 (2102)
T ss_pred CHHHHHHHHHHHHHHhCC--CHHHHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHH
Confidence 578999999999999997 89999999999999999999998 4788999999999999987764 68899999999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchh--
Q 016639 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV-- 297 (385)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv-~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~-- 297 (385)
.|+++|++ ++.+++..|+|+|.|+|.. +.+++.++ ++|++++|+++|++++.+++++|+|+|.+|+.+.|.+..
T Consensus 492 ~LV~LL~s--~~~~iqeeAawAL~NLa~~-~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~ 568 (2102)
T PLN03200 492 PLVQLLET--GSQKAKEDSATVLWNLCCH-SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQ 568 (2102)
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHHHhCC-cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHH
Confidence 99999985 4789999999999999874 55555555 889999999999999889999999999999754443210
Q ss_pred ---------------hhhc----------hhHHHHHH-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hHHHHHH
Q 016639 298 ---------------ASQV----------YGYARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSV 350 (385)
Q Consensus 298 ---------------~g~a----------~~~a~~I~-e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e~c~~I 350 (385)
.-.+ .+-....+ ..|||+.|+++|+++ ++.+++.++++|.+++.. .++|+.+
T Consensus 569 Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~av 647 (2102)
T PLN03200 569 LTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESL 647 (2102)
T ss_pred HHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 0000 01111122 468999999999986 777999999999999875 4899999
Q ss_pred HHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 351 AENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 351 ~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+..||+++++.+++++ . .++.++++.+|-+|
T Consensus 648 v~agaIpPLV~LLss~--~--~~v~keAA~AL~nL 678 (2102)
T PLN03200 648 ATDEIINPCIKLLTNN--T--EAVATQSARALAAL 678 (2102)
T ss_pred HHcCCHHHHHHHHhcC--C--hHHHHHHHHHHHHH
Confidence 9999999999999873 2 37888888887654
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.90 E-value=5.7e-22 Score=226.00 Aligned_cols=272 Identities=16% Similarity=0.116 Sum_probs=214.8
Q ss_pred HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHH--HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHH
Q 016639 77 MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLI 154 (385)
Q Consensus 77 i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~--~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~ 154 (385)
+..+.|.-.|..++++ ++|++++.+.... .+.+. ..+..|..++... +.+.+..+++.|+
T Consensus 410 V~LL~~~~~evQ~~Av-------~aL~~L~~~~~e~----~~aIi~~ggIp~LV~LL~s~-------s~~iQ~~A~~~L~ 471 (2102)
T PLN03200 410 VGLITMATADVQEELI-------RALSSLCCGKGGL----WEALGGREGVQLLISLLGLS-------SEQQQEYAVALLA 471 (2102)
T ss_pred hhhhccCCHHHHHHHH-------HHHHHHhCCCHHH----HHHHHHcCcHHHHHHHHcCC-------CHHHHHHHHHHHH
Confidence 3445577788888888 7777776553221 11222 3678888888764 6788999999999
Q ss_pred HHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHh-hCCCcHHHHHHHhcC----
Q 016639 155 ELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPKLLVNILIDG---- 229 (385)
Q Consensus 155 ~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~-~~ggi~~Lv~lL~~~---- 229 (385)
.++++ +++++..++++|+||+|+.+|++ ++.+++..|+|+|+||+.+.+..+.++ +.|+++.|+++|+++
T Consensus 472 nLa~~--ndenr~aIieaGaIP~LV~LL~s---~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~ 546 (2102)
T PLN03200 472 ILTDE--VDESKWAITAAGGIPPLVQLLET---GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKG 546 (2102)
T ss_pred HHHcC--CHHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHH
Confidence 99997 88999999999999999999987 478899999999999987554333333 445555555555432
Q ss_pred -------------------------------------------------------------------------CCCHHHH
Q 016639 230 -------------------------------------------------------------------------NEDPEIL 236 (385)
Q Consensus 230 -------------------------------------------------------------------------~~~~~v~ 236 (385)
+++.+++
T Consensus 547 q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ik 626 (2102)
T PLN03200 547 QEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQ 626 (2102)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHH
Confidence 1234566
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHH
Q 016639 237 NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARA 316 (385)
Q Consensus 237 ~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~ 316 (385)
+.|+|+|.++|.++.++++.++..|++++|+.+|++++.+++++++|+|.+|+. ++.+++..++++.|+|+|
T Consensus 627 k~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~--------~~~~~q~~~~v~~GaV~p 698 (2102)
T PLN03200 627 EKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSR--------SIKENRKVSYAAEDAIKP 698 (2102)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHh--------CCCHHHHHHHHHcCCHHH
Confidence 778888888888899999999999999999999999999999999999999984 223355667889999999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 317 LVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 317 Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
|+++|+.. +..+...++.+|.+++...+.+.+|.+.||++.|+++|+++++ +.-+.|+++|.+
T Consensus 699 L~~LL~~~-d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~----~~k~~Aa~AL~~ 761 (2102)
T PLN03200 699 LIKLAKSS-SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTL----EGKRNAARALAQ 761 (2102)
T ss_pred HHHHHhCC-ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCCh----HHHHHHHHHHHH
Confidence 99999885 7778999999999999999999999999999999999998643 455666666644
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.2e-21 Score=196.77 Aligned_cols=236 Identities=14% Similarity=0.149 Sum_probs=197.4
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~ 202 (385)
+++.|...+.... ....++.+.|.|+.+|++ ++|. ..+-.-..++|.|..++.+ .|+.++..|+|+|++
T Consensus 195 ~l~pLl~~l~~~~------~~~~lRn~tW~LsNlcrg-k~P~-P~~~~v~~iLp~L~~ll~~---~D~~Vl~Da~WAlsy 263 (514)
T KOG0166|consen 195 ALDPLLRLLNKSD------KLSMLRNATWTLSNLCRG-KNPS-PPFDVVAPILPALLRLLHS---TDEEVLTDACWALSY 263 (514)
T ss_pred chHHHHHHhcccc------chHHHHHHHHHHHHHHcC-CCCC-CcHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHH
Confidence 5566666655431 246889999999999998 3333 3444445789999999998 599999999999999
Q ss_pred HhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHcc-CChHHHHH
Q 016639 203 LVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-QRNDSIQS 280 (385)
Q Consensus 203 L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~-~~~~v~k~ 280 (385)
|++|... .+.+++.|.++.|+.+|.+ .+..++..|++++.|+++|++.+.+.+++.|+++.|..+|.. +...+.++
T Consensus 264 Lsdg~ne~iq~vi~~gvv~~LV~lL~~--~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkE 341 (514)
T KOG0166|consen 264 LTDGSNEKIQMVIDAGVVPRLVDLLGH--SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKE 341 (514)
T ss_pred HhcCChHHHHHHHHccchHHHHHHHcC--CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHH
Confidence 9988665 4899999999999999986 456788899999999999999999999999999999999995 45568889
Q ss_pred HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHH
Q 016639 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDA 358 (385)
Q Consensus 281 A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~ 358 (385)
|||+|+|+|. |..+|+.++..+|.+|.|+.+|.+. +-.++++++|+++|++.. ++.-.-+++.|.|+.
T Consensus 342 AcW~iSNItA---------G~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~p 411 (514)
T KOG0166|consen 342 ACWTISNITA---------GNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKP 411 (514)
T ss_pred HHHHHHHhhc---------CCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchh
Confidence 9999999984 4557888999999999999999996 667899999999999864 577789999999999
Q ss_pred HHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 359 LLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 359 Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+.++| ...|. .+...++..|.+|
T Consensus 412 lcdlL-~~~D~---~ii~v~Ld~l~ni 434 (514)
T KOG0166|consen 412 LCDLL-TCPDV---KIILVALDGLENI 434 (514)
T ss_pred hhhcc-cCCCh---HHHHHHHHHHHHH
Confidence 99999 54443 4688888777664
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.86 E-value=4.1e-21 Score=183.68 Aligned_cols=305 Identities=13% Similarity=0.146 Sum_probs=237.8
Q ss_pred CCCCCccccccccccCCCcccCCCchhhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCC
Q 016639 34 AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGES 113 (385)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~ 113 (385)
+++-|-||-..|.+.+++++|-.-. +-. =--|-+..+|+ +.-.-|||+ -|.|.||..+.
T Consensus 88 q~qav~kFR~~LS~E~~PPIq~VId--aGv--VpRfvefm~~~------------q~~mlqfEA-aWalTNiaSGt---- 146 (526)
T COG5064 88 QLQAVYKFRKLLSKETSPPIQPVID--AGV--VPRFVEFMDEI------------QRDMLQFEA-AWALTNIASGT---- 146 (526)
T ss_pred HHHHHHHHHHHhccccCCCchhHHh--ccc--cHHHHHHHHhc------------chhHHHHHH-HHHHhhhccCc----
Confidence 5566667777788888888772211 000 01233333322 111223433 27899995432
Q ss_pred CCCCchHH--HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHh
Q 016639 114 SLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKR 191 (385)
Q Consensus 114 ~~~~~~v~--~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~ 191 (385)
..++|.++ .++..+...+.+. +.+...+++|+|-++... ++.+|..+.+.|++.+|+.++.+.. .+.+
T Consensus 147 t~QTkvVvd~~AVPlfiqlL~s~-------~~~V~eQavWALGNiAGD--S~~~RD~vL~~galeplL~ll~ss~-~~is 216 (526)
T COG5064 147 TQQTKVVVDAGAVPLFIQLLSST-------EDDVREQAVWALGNIAGD--SEGCRDYVLQCGALEPLLGLLLSSA-IHIS 216 (526)
T ss_pred ccceEEEEeCCchHHHHHHHcCc-------hHHHHHHHHHHhccccCC--chhHHHHHHhcCchHHHHHHHHhcc-chHH
Confidence 22445555 4677788888765 678888999999999885 9999999999999999999998642 3568
Q ss_pred HHHHHHHHHHHHhcCCccchhHh-hCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHH
Q 016639 192 VLDSCLKTMALLVHDVQSTETFR-TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL 270 (385)
Q Consensus 192 vl~~Al~aLa~L~~~~~~~~~i~-~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL 270 (385)
++.++.|+|+||+.|....++-- =..++|.|.+++-. .+++++..|||+|+.+..+..+..+.|.+.|..+.|+++|
T Consensus 217 mlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys--~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElL 294 (526)
T COG5064 217 MLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYS--RDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL 294 (526)
T ss_pred HHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHh
Confidence 99999999999999965544432 24678999999874 6899999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hHHHHH
Q 016639 271 SRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKS 349 (385)
Q Consensus 271 ~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e~c~~ 349 (385)
.+.+..++..|.+.+.|+.+++|.+.. .|..+|.++++-.+|.+. ...+.+++||+++|+... .+..+.
T Consensus 295 s~~sa~iqtPalR~vGNIVTG~D~QTq---------viI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqa 364 (526)
T COG5064 295 SHESAKIQTPALRSVGNIVTGSDDQTQ---------VIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQA 364 (526)
T ss_pred cCccccccCHHHHhhcCeeecCcccee---------hheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHH
Confidence 998878888999999999999988775 477999999999999875 346899999999999654 589999
Q ss_pred HHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 350 I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+.+..-+++|+.+|... .- .+-|+||.++.|.
T Consensus 365 vid~nliPpLi~lls~a--e~--k~kKEACWAisNa 396 (526)
T COG5064 365 VIDANLIPPLIHLLSSA--EY--KIKKEACWAISNA 396 (526)
T ss_pred HHhcccchHHHHHHHHH--HH--HHHHHHHHHHHhh
Confidence 99999999999999873 23 6889999999873
No 8
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.86 E-value=2.7e-19 Score=171.02 Aligned_cols=297 Identities=16% Similarity=0.188 Sum_probs=230.1
Q ss_pred HHHHHHHHhhHHhcCCChhHHHHHHHHHH-HHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCC---------
Q 016639 67 EAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKD--------- 136 (385)
Q Consensus 67 etfd~~v~eni~~f~m~~~eAl~~aI~qf-e~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~--------- 136 (385)
+-|+|+ -+..+.|- ++--++--.-| ..|.+++.-+++...-..+....+....|..|.....+..+
T Consensus 74 ~~~~E~-s~ll~~l~---d~ck~~~A~r~la~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~v 149 (461)
T KOG4199|consen 74 QKLEET-TELLEQLA---DECKKSLAHRVLAGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAV 149 (461)
T ss_pred hhhHHH-HHHHHHHH---HHHhhhHHHHHHhccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcchhccccHHH
Confidence 444443 34455554 34444444455 44777887776653321111123444555555444332110
Q ss_pred -----CCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccch
Q 016639 137 -----KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTE 211 (385)
Q Consensus 137 -----~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~ 211 (385)
.....+.+.....+..++..|-+ ++-||..+++.++.|.+.+.|... +...+...+++++..|+.++|.|-
T Consensus 150 vv~lL~~~~~~~dlt~~~~~~v~~Ac~~--hE~nrQ~~m~~~il~Li~~~l~~~--gk~~~VRel~~a~r~l~~dDDiRV 225 (461)
T KOG4199|consen 150 VLKLLALKVESEEVTLLTLQWLQKACIM--HEVNRQLFMELKILELILQVLNRE--GKTRTVRELYDAIRALLTDDDIRV 225 (461)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHH--hHHHHHHHHHhhHHHHHHHHHccc--CccHHHHHHHHHHHHhcCCCceee
Confidence 01112556778889999999998 999999999999999999877664 344688889999999999887642
Q ss_pred ----------hHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh----HH
Q 016639 212 ----------TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DS 277 (385)
Q Consensus 212 ----------~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~----~v 277 (385)
.|...|++..|++.|..+-+ +.++...+.+|..++..+| ..+.|+++||+..|+.+|...+. ..
T Consensus 226 ~fg~ah~hAr~ia~e~~l~~L~Eal~A~~d-p~~L~~l~~tl~~lAVr~E-~C~~I~e~GGl~tl~~~i~d~n~~~~r~l 303 (461)
T KOG4199|consen 226 VFGQAHGHARTIAKEGILTALTEALQAGID-PDSLVSLSTTLKALAVRDE-ICKSIAESGGLDTLLRCIDDSNEQGNRTL 303 (461)
T ss_pred ecchhhHHHHHHHHhhhHHHHHHHHHccCC-ccHHHHHHHHHHHHHHHHH-HHHHHHHccCHHHHHHHHhhhchhhHHHH
Confidence 45678899999999998765 8888999999999987665 56889999999999999987433 47
Q ss_pred HHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCh-HHHHHHHHcCc
Q 016639 278 IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVND-EICKSVAENGG 355 (385)
Q Consensus 278 ~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~~-e~c~~I~e~GG 355 (385)
.|.+|..||.|+.+|++|.. |++.||++.++.++..|. ++.+..++|.++.-|+.|. +....++|.||
T Consensus 304 ~k~~lslLralAG~DsvKs~----------IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~ 373 (461)
T KOG4199|consen 304 AKTCLSLLRALAGSDSVKST----------IVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGA 373 (461)
T ss_pred HHHHHHHHHHHhCCCchHHH----------HHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcch
Confidence 78899999999999999864 999999999999999988 7889999999999999984 89999999999
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 356 IDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 356 l~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
-+..+++|+.||-+. .|+|++|.+|||+
T Consensus 374 a~~avqAmkahP~~a--~vQrnac~~IRNi 401 (461)
T KOG4199|consen 374 ADLAVQAMKAHPVAA--QVQRNACNMIRNI 401 (461)
T ss_pred HHHHHHHHHhCcHHH--HHHHHHHHHHHHH
Confidence 999999999998776 9999999999985
No 9
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3e-18 Score=165.30 Aligned_cols=221 Identities=19% Similarity=0.237 Sum_probs=185.8
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCC--Cc
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG--GP 219 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~g--gi 219 (385)
+...++.++..|..... +.+||...+.+|++|.||+++++ +|..++..|+.+++++..+.-.+..+.+.+ -+
T Consensus 180 dirvqrnatgaLlnmTh---s~EnRr~LV~aG~lpvLVsll~s---~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv 253 (550)
T KOG4224|consen 180 DIRVQRNATGALLNMTH---SRENRRVLVHAGGLPVLVSLLKS---GDLDVQYYCTTAISNIAVDRRARKILAQAEPKLV 253 (550)
T ss_pred hhhHHHHHHHHHHHhhh---hhhhhhhhhccCCchhhhhhhcc---CChhHHHHHHHHhhhhhhhHHHHHHHHhcccchH
Confidence 55678889999988877 69999999999999999999998 599999999999999987655566777776 89
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhh
Q 016639 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS 299 (385)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g 299 (385)
+.|+++++++ ++++++.|.-+|+++++. ++.+..|+++|++|.++++|++...+.+-+..++|||++...-+-+
T Consensus 254 ~~Lv~Lmd~~--s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~--- 327 (550)
T KOG4224|consen 254 PALVDLMDDG--SDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEV--- 327 (550)
T ss_pred HHHHHHHhCC--ChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccc---
Confidence 9999999974 678999999999999865 5577889999999999999998877777788888999986555544
Q ss_pred hchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHH
Q 016639 300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARIC 378 (385)
Q Consensus 300 ~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a 378 (385)
.|+++|-+.|||++|+.+.+.+++..+..+|++||. ...+...|.+.|+|+++.+++.+++- ..++-.-.|
T Consensus 328 -------lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pv-svqseisac 399 (550)
T KOG4224|consen 328 -------LIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPV-SVQSEISAC 399 (550)
T ss_pred -------ceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCCh-hHHHHHHHH
Confidence 489999999999999998777899999999999998 56799999999999999999998643 223334444
Q ss_pred HHHH
Q 016639 379 CSLL 382 (385)
Q Consensus 379 ~~~L 382 (385)
++.|
T Consensus 400 ~a~L 403 (550)
T KOG4224|consen 400 IAQL 403 (550)
T ss_pred HHHH
Confidence 4443
No 10
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=1.9e-18 Score=166.70 Aligned_cols=309 Identities=14% Similarity=0.178 Sum_probs=236.3
Q ss_pred cccccccccCCCcccCCCchhhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHH-HHcCCCCCCCccCCCCCCCCCCc
Q 016639 40 KDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDLSGIVKCVPGESSLKDN 118 (385)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qf-e~QGvdLsni~~~~~~~~~~~~~ 118 (385)
+-.+-|+-.||.-.|-.++-+---||......|-+|.++-. --++++--.+. -.-|..|+|..-......--
T Consensus 50 raltvL~ySDnlnlqrsaalafAeitek~vr~Vsres~epv----l~llqs~d~~Iq~aa~~alGnlAVn~enk~li--- 122 (550)
T KOG4224|consen 50 RALTVLKYSDNLNLQRSAALAFAEITEKGVRRVSRESNEPV----LALLQSCDKCIQCAAGEALGNLAVNMENKGLI--- 122 (550)
T ss_pred chheeeeeccccccchHHHHHHHHHHHHHHHHhhhhhhhHH----HHHHhCcchhhhhhhhhhhccceeccCCceEE---
Confidence 34567888999999977765545566666666666654311 11112222222 22466777774332111000
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHH
Q 016639 119 PLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLK 198 (385)
Q Consensus 119 ~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~ 198 (385)
.-+.-|+-|..-.... .-+.++.++.++..+..- .+||.-++..|++.+|..|-++ .|..++.+++.
T Consensus 123 v~l~Gl~~Li~qmmtd-------~vevqcnaVgCitnLaT~---d~nk~kiA~sGaL~pltrLaks---kdirvqrnatg 189 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTD-------GVEVQCNAVGCITNLATF---DSNKVKIARSGALEPLTRLAKS---KDIRVQRNATG 189 (550)
T ss_pred EeccChHHHHHHhcCC-------CcEEEeeehhhhhhhhcc---ccchhhhhhccchhhhHhhccc---chhhHHHHHHH
Confidence 0112244444444333 557888999999999885 7789999999999999997666 48889999999
Q ss_pred HHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC--ChHHHHHHHccCChH
Q 016639 199 TMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK--IDELILEILSRQRND 276 (385)
Q Consensus 199 aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G--~i~~Lv~lL~~~~~~ 276 (385)
+|.+|++..++++.++.+||+|+|+.+|+. .+.+++..++.+|++++. ++.+|..+++++ +++.||.+|+.+++.
T Consensus 190 aLlnmThs~EnRr~LV~aG~lpvLVsll~s--~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~k 266 (550)
T KOG4224|consen 190 ALLNMTHSRENRRVLVHAGGLPVLVSLLKS--GDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDLMDDGSDK 266 (550)
T ss_pred HHHHhhhhhhhhhhhhccCCchhhhhhhcc--CChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHHHhCCChH
Confidence 999999998889999999999999999996 588999999999999985 678999999998 999999999999998
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcH
Q 016639 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGI 356 (385)
Q Consensus 277 v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl 356 (385)
++-.|.-+|++|+.+... ++.|++.|++|.++++|++..-+.++..+ ..++++++.+-+-.-|++.|-+
T Consensus 267 vkcqA~lALrnlasdt~Y----------q~eiv~ag~lP~lv~Llqs~~~plilasV-aCIrnisihplNe~lI~dagfl 335 (550)
T KOG4224|consen 267 VKCQAGLALRNLASDTEY----------QREIVEAGSLPLLVELLQSPMGPLILASV-ACIRNISIHPLNEVLIADAGFL 335 (550)
T ss_pred HHHHHHHHHhhhcccchh----------hhHHHhcCCchHHHHHHhCcchhHHHHHH-HHHhhcccccCcccceecccch
Confidence 888999999999987654 45599999999999999885445454443 3589999999999999999999
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 357 DALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 357 ~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
.+|+++|+. .+. +++.-.+.+.||+|
T Consensus 336 ~pLVrlL~~-~dn--EeiqchAvstLrnL 361 (550)
T KOG4224|consen 336 RPLVRLLRA-GDN--EEIQCHAVSTLRNL 361 (550)
T ss_pred hHHHHHHhc-CCc--hhhhhhHHHHHHHH
Confidence 999999986 333 48999999999986
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.54 E-value=9.2e-13 Score=140.39 Aligned_cols=200 Identities=14% Similarity=0.167 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHH
Q 016639 146 MMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNI 225 (385)
Q Consensus 146 ~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~l 225 (385)
++-++..|-+++. ++....-..+.|.++.|+.+|.+ ++.+++..++..|..|+...+++..+.+.|.++.|.++
T Consensus 266 lrv~~~lLlNLAe---d~~ve~kM~~~~iV~~Lv~~Ldr---~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kL 339 (708)
T PF05804_consen 266 LRVAFYLLLNLAE---DPRVELKMVNKGIVSLLVKCLDR---ENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHhc---ChHHHHHHHhcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHH
Confidence 3344445566654 67778888999999999999987 47889999999999999888778899999999999999
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHH
Q 016639 226 LIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYA 305 (385)
Q Consensus 226 L~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a 305 (385)
|.+ ++.+++..++++|.|++. +.++|..+++.|++|.|+.+|...+ ...-+...|.+|+.+|+.|.
T Consensus 340 l~s--~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~--------- 405 (708)
T PF05804_consen 340 LPS--ENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARS--------- 405 (708)
T ss_pred hcC--CCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHH---------
Confidence 986 467899999999999875 6779999999999999999998765 34558899999999998775
Q ss_pred HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhc
Q 016639 306 RRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS 366 (385)
Q Consensus 306 ~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~ 366 (385)
++...++++.|+++|-.++++.+..++.+++.||+.+..+++.|.+.||++.|++..-+.
T Consensus 406 -~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~ 465 (708)
T PF05804_consen 406 -MFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKT 465 (708)
T ss_pred -HHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhc
Confidence 477789999999998887666666788999999999999999999999999998766553
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.42 E-value=2.9e-11 Score=128.98 Aligned_cols=227 Identities=11% Similarity=0.071 Sum_probs=183.9
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
..+..|...++.. +.+.+..++..|..++- ..+|+..+++.|++|.|+.++.+ ++..++..+++.|-
T Consensus 290 ~iV~~Lv~~Ldr~-------n~ellil~v~fLkkLSi---~~ENK~~m~~~giV~kL~kLl~s---~~~~l~~~aLrlL~ 356 (708)
T PF05804_consen 290 GIVSLLVKCLDRE-------NEELLILAVTFLKKLSI---FKENKDEMAESGIVEKLLKLLPS---ENEDLVNVALRLLF 356 (708)
T ss_pred CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHcC---CHHHHHHHHHcCCHHHHHHHhcC---CCHHHHHHHHHHHH
Confidence 3566777777654 77888899999999987 58899999999999999999987 46789999999999
Q ss_pred HHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-HHHHH
Q 016639 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS 280 (385)
Q Consensus 202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k~ 280 (385)
||+.+.+.+..+++.|.+|.|+.+|.+. .....++.+|.+++ .++++|..|...+.+|.|+.+|-.++. .+..+
T Consensus 357 NLSfd~~~R~~mV~~GlIPkLv~LL~d~----~~~~val~iLy~LS-~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~e 431 (708)
T PF05804_consen 357 NLSFDPELRSQMVSLGLIPKLVELLKDP----NFREVALKILYNLS-MDDEARSMFAYTDCIPQLMQMLLENSEEEVQLE 431 (708)
T ss_pred HhCcCHHHHHHHHHCCCcHHHHHHhCCC----chHHHHHHHHHHhc-cCHhhHHHHhhcchHHHHHHHHHhCCCccccHH
Confidence 9999988899999999999999999752 34445788899987 478899999999999999998766544 67778
Q ss_pred HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHHHHcCcHHHH
Q 016639 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDAL 359 (385)
Q Consensus 281 A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I~e~GGl~~L 359 (385)
+.+.+.||+.+. .++..+.+.||++.|++..-...++- ++..++|++.++ .....+. +-+..|
T Consensus 432 liaL~iNLa~~~----------rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~f~--~~i~~L 495 (708)
T PF05804_consen 432 LIALLINLALNK----------RNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKELFV--DFIGDL 495 (708)
T ss_pred HHHHHHHHhcCH----------HHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHHHH--HHHHHH
Confidence 999999999754 45667888899999999887754542 456889999887 4444444 466677
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 360 LRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 360 v~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+.++... + +.+..-+|++.|.||
T Consensus 496 ~~~v~~~-~--~ee~~vE~LGiLaNL 518 (708)
T PF05804_consen 496 AKIVSSG-D--SEEFVVECLGILANL 518 (708)
T ss_pred HHHhhcC-C--cHHHHHHHHHHHHhc
Confidence 7776552 3 448999999999986
No 13
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.34 E-value=1.5e-10 Score=121.80 Aligned_cols=223 Identities=17% Similarity=0.140 Sum_probs=176.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc---chhHhhCCC
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS---TETFRTGGG 218 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~---~~~i~~~gg 218 (385)
++..+..+..-+..+|.+ +..-+..+-+.|+|+.||.+|.+ ...+++..|+++|-||..|... +-.|.+.+|
T Consensus 246 ~~~~qsnaaaylQHlcfg--d~~ik~~vrqlggI~kLv~Ll~~---~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~G 320 (717)
T KOG1048|consen 246 DPSVQSNAAAYLQHLCFG--DNKIKSRVRQLGGIPKLVALLDH---RNDEVQRQACGALRNLVFGKSTDSNKLAIKELNG 320 (717)
T ss_pred ChhhhHHHHHHHHHHHhh--hHHHHHHHHHhccHHHHHHHhcC---CcHHHHHHHHHHHHhhhcccCCcccchhhhhcCC
Confidence 667888999999999998 88889999999999999999998 4789999999999999987554 357789999
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--------------------------------------------------
Q 016639 219 PKLLVNILIDGNEDPEILNSGFAVVAASAT-------------------------------------------------- 248 (385)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~-------------------------------------------------- 248 (385)
++.++++|+.- .|.++......+++|+.+
T Consensus 321 v~~l~~~Lr~t-~D~ev~e~iTg~LWNLSS~D~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLR 399 (717)
T KOG1048|consen 321 VPTLVRLLRHT-QDDEVRELITGILWNLSSNDALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLR 399 (717)
T ss_pred hHHHHHHHHhh-cchHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhc
Confidence 99999999852 233433333333333221
Q ss_pred --------------------------------------------------------------------------------
Q 016639 249 -------------------------------------------------------------------------------- 248 (385)
Q Consensus 249 -------------------------------------------------------------------------------- 248 (385)
T Consensus 400 NlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~ 479 (717)
T KOG1048|consen 400 NLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPA 479 (717)
T ss_pred cccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcc
Confidence
Q ss_pred ---------------------------------------------------------------------CC----hhhHH
Q 016639 249 ---------------------------------------------------------------------GN----EVVKE 255 (385)
Q Consensus 249 ---------------------------------------------------------------------~~----e~nr~ 255 (385)
+. +..++
T Consensus 480 ~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~ 559 (717)
T KOG1048|consen 480 ESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRG 559 (717)
T ss_pred cccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHh
Confidence 00 11133
Q ss_pred HH-HhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCC-----HHH
Q 016639 256 SY-MELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS-----SPS 329 (385)
Q Consensus 256 ~i-v~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~-----~~v 329 (385)
.| .+..++++|+++|+.++..|++.+|.+|+||+.|-.+|.. |. .++|+-|++.|..+.. .++
T Consensus 560 ~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~l----------ig-k~a~~~lv~~Lp~~~~~~~~sedt 628 (717)
T KOG1048|consen 560 AVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKEL----------IG-KYAIPDLVRCLPGSGPSTSLSEDT 628 (717)
T ss_pred hhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhh----------hh-cchHHHHHHhCcCCCCCcCchHHH
Confidence 44 5677899999999999889999999999999998887753 33 6789999999988654 478
Q ss_pred HHHHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 330 LISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 330 ~~~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+..+|.+|.++...+ ++...+.+.+|+++|+.+.++ ..+. .+.|.++.+|-.
T Consensus 629 v~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s-~~S~--k~~kaAs~vL~~ 681 (717)
T KOG1048|consen 629 VRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKS-QHSP--KEFKAASSVLDV 681 (717)
T ss_pred HHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcc-cCCH--HHHHHHHHHHHH
Confidence 899999999998665 899999999999999888777 4444 789999888753
No 14
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.28 E-value=9.5e-11 Score=96.71 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=104.5
Q ss_pred HHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 016639 169 ATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASA 247 (385)
Q Consensus 169 ~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~ 247 (385)
+.+.|+++.|+++|++. +..+...++++|++++.+.+. ...+++.|+++.++++|.+ ++..++..++++|++++
T Consensus 3 ~~~~~~i~~l~~~l~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 3 VIQAGGLPALVSLLSSS---DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLA 77 (120)
T ss_pred HHHcCChHHHHHHHHcC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHc
Confidence 56889999999999874 688999999999999988544 5788889999999999986 57899999999999999
Q ss_pred cCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 248 TGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 248 ~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
...+..+..+.+.|+++.|+++|...+..+.+.++|+|++|+
T Consensus 78 ~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred cCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 888788888889999999999999988899999999999986
No 15
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.24 E-value=2.8e-10 Score=93.84 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=103.4
Q ss_pred hHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 016639 212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP 291 (385)
Q Consensus 212 ~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~ 291 (385)
.+++.|+++.++++|.+. +..+...++++|.+++...+.++..+++.|+++.++.+|...+..+++.++|+|++|+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSS--DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccC
Confidence 467889999999999864 578999999999999998899999999999999999999998889999999999999975
Q ss_pred CccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 292 Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
.. .....+.+.|+++.|+++|... +..+.+.++++|.+|+
T Consensus 80 ~~---------~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 PE---------DNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLA 119 (120)
T ss_pred cH---------HHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhh
Confidence 53 2234566889999999999885 6778999999999986
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.22 E-value=7.4e-10 Score=105.49 Aligned_cols=192 Identities=12% Similarity=0.137 Sum_probs=154.2
Q ss_pred HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 016639 170 TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG 249 (385)
Q Consensus 170 ~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~ 249 (385)
.+.+-++.|+.+|+.. .|+.++..++.++++.+.-+.++..+.+.||++.+..+|.+ +++.+...|++++.+++.
T Consensus 9 l~~~~l~~Ll~lL~~t--~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~--p~~~vr~~AL~aL~Nls~- 83 (254)
T PF04826_consen 9 LEAQELQKLLCLLEST--EDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLND--PNPSVREKALNALNNLSV- 83 (254)
T ss_pred cCHHHHHHHHHHHhcC--CChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCC--CChHHHHHHHHHHHhcCC-
Confidence 4556789999999975 58999999999999976655445667789999999999986 578999999999999864
Q ss_pred ChhhHHHHHhCCChHHHHHHHccC--ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCH
Q 016639 250 NEVVKESYMELKIDELILEILSRQ--RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS 327 (385)
Q Consensus 250 ~e~nr~~iv~~G~i~~Lv~lL~~~--~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~ 327 (385)
+.+|+..| +. .++.+.+.+.++ +.+++..+..+|++|+..++.+. .++ +.++.++.+|..+ +.
T Consensus 84 ~~en~~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~----------~l~--~~i~~ll~LL~~G-~~ 148 (254)
T PF04826_consen 84 NDENQEQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH----------MLA--NYIPDLLSLLSSG-SE 148 (254)
T ss_pred ChhhHHHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh----------hHH--hhHHHHHHHHHcC-Ch
Confidence 56676665 33 567777665554 33899999999999998887643 243 4799999999997 66
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 328 PSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 328 ~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
.++..++.+|.+|+.++.+...+..++++..++.++... .++++...++.++.|
T Consensus 149 ~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~---~~~~~l~~~l~~~~n 202 (254)
T PF04826_consen 149 KTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSS---ESKENLLRVLTFFEN 202 (254)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccC---CccHHHHHHHHHHHH
Confidence 688899999999999999999999999999999998873 334677777766654
No 17
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.19 E-value=1.4e-10 Score=122.10 Aligned_cols=157 Identities=15% Similarity=0.154 Sum_probs=126.5
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhh
Q 016639 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVA 298 (385)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~ 298 (385)
++-.+..|.+ .++.++..|...+.++|.+++..|..+-+.|+|+.||.+|.+...+|+++|||+||||..+++.+
T Consensus 235 lpe~i~mL~~--q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~--- 309 (717)
T KOG1048|consen 235 LPEVISMLMS--QDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD--- 309 (717)
T ss_pred cHHHHHHHhc--cChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc---
Confidence 5667777774 57889999999999999999999999999999999999999999999999999999998544321
Q ss_pred hhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHH-HHhcC---------C
Q 016639 299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRC-IDDSG---------L 368 (385)
Q Consensus 299 g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~l-l~~~~---------~ 368 (385)
+|.-.|.++|||+.++++|+.-.|.++.+.+..+|+||..++..|..|.. .++..|-+. +.-+. .
T Consensus 310 ----~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~-~al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 310 ----SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT-SALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred ----ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH-HHHHHHHHhhcccccccCCCCcccc
Confidence 23335889999999999999855888999999999999999888887776 455555433 33322 1
Q ss_pred cCcHHHHHHHHHHHhcC
Q 016639 369 QGNKTVARICCSLLSKV 385 (385)
Q Consensus 369 ~~~~~v~k~a~~~Lr~l 385 (385)
...++|.+.+-.+|||+
T Consensus 385 ~~~~~vf~n~tgcLRNl 401 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNL 401 (717)
T ss_pred cccceeeehhhhhhccc
Confidence 12347888888888875
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.19 E-value=8.2e-10 Score=121.23 Aligned_cols=308 Identities=13% Similarity=0.147 Sum_probs=208.6
Q ss_pred hHHHHHHHHHhh----HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCC-CCCchHHHHHHHHHHHhh-------
Q 016639 65 SQEAFDEVVKEN----MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESS-LKDNPLIQSLERLKQLDL------- 132 (385)
Q Consensus 65 sqetfd~~v~en----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~-~~~~~v~~al~~L~~~l~------- 132 (385)
++|+--+.++.. +-...-.|+++.++|-... +-.|-|||..-|.... .-..-++..|+.++..+.
T Consensus 224 s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A---~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lq 300 (2195)
T KOG2122|consen 224 SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRA---SAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQ 300 (2195)
T ss_pred CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHH---HHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455533444444 2222334444444444332 1346688888665311 122345566665555443
Q ss_pred cCCC-CCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhccc------CCc---HhHHHHHHHHHHH
Q 016639 133 NSKD-KFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR------CGS---KRVLDSCLKTMAL 202 (385)
Q Consensus 133 ~~~~-~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~------~~d---~~vl~~Al~aLa~ 202 (385)
..++ .-...+...++.|+-.|-.++- ++++|..+-+.|++.+|-+|+.-.. .+| ..+...|..+|+|
T Consensus 301 ar~~~~apa~~~H~lcaA~~~lMK~SF---DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTN 377 (2195)
T KOG2122|consen 301 ARGPAIAPASDEHQLCAALCTLMKLSF---DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTN 377 (2195)
T ss_pred hcCCCCCCcccchhhHHHHHHHHHhhc---cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhc
Confidence 2222 2222344566677777777766 7999999999999999888774211 122 2567788999999
Q ss_pred HhcCCccchhH--hhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH-HhCCChHHHHHH-HccCChHHH
Q 016639 203 LVHDVQSTETF--RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESY-MELKIDELILEI-LSRQRNDSI 278 (385)
Q Consensus 203 L~~~~~~~~~i--~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i-v~~G~i~~Lv~l-L~~~~~~v~ 278 (385)
|+.|+..+... -..|-++.||..|.. ...+++.-.+.+|+|+.=.-+.|-..+ -+.|-+..|..+ |+.++...+
T Consensus 378 LTFGDv~NKa~LCs~rgfMeavVAQL~s--~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTL 455 (2195)
T KOG2122|consen 378 LTFGDVANKATLCSQRGFMEAVVAQLIS--APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTL 455 (2195)
T ss_pred cccccccchhhhhhhhhHHHHHHHHHhc--ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchH
Confidence 99997664333 356789999999986 345777777788888766666664444 478888888776 677776789
Q ss_pred HHHHHHHHHhc-CCCccchhhhhc----------------------------------------hhHHHHHHhcCcHHHH
Q 016639 279 QSLYDAIRVLL-TPDDDQVVASQV----------------------------------------YGYARRFAKIGIARAL 317 (385)
Q Consensus 279 k~A~~aL~~Lt-~~Dd~rv~~g~a----------------------------------------~~~a~~I~e~Ggi~~L 317 (385)
|....+|+||+ .--++|.+|=.. -+|...+.++++|..|
T Consensus 456 KavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~L 535 (2195)
T KOG2122|consen 456 KAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTL 535 (2195)
T ss_pred HHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHH
Confidence 99999999995 333444433220 1444444578999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 318 VHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 318 v~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+..|+++. -.++.++|++|+||..++ +-.+.+-+.|++..|..++.+ .|+.++.-+.++||||
T Consensus 536 LQ~LKS~S-LTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS----KhkMIa~GSaaALrNL 599 (2195)
T KOG2122|consen 536 LQHLKSHS-LTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS----KHKMIAMGSAAALRNL 599 (2195)
T ss_pred HHHhhhcc-eEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh----hhhhhhhhHHHHHHHH
Confidence 99999873 347799999999999886 888999999999999999875 3459999999999986
No 19
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.16 E-value=2.7e-09 Score=105.75 Aligned_cols=243 Identities=18% Similarity=0.243 Sum_probs=175.7
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC----CcHhHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC----GSKRVLDSCL 197 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~----~d~~vl~~Al 197 (385)
.+++.|++..++. +.+...+..+.|.+.|.- +.++|..+-+.||-..++.+|+..+. +..+...-++
T Consensus 87 ~~le~Lrq~psS~-------d~ev~~Q~~RaLgNiCyd--n~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~ 157 (604)
T KOG4500|consen 87 EALELLRQTPSSP-------DTEVHEQCFRALGNICYD--NNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAF 157 (604)
T ss_pred HHHHHHHhCCCCC-------cccHHHHHHHHHhhhhcc--CchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHH
Confidence 5666666666553 677888899999999996 99999999999997777777765442 2346777788
Q ss_pred HHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHH----------------------------HHHH---------
Q 016639 198 KTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEI----------------------------LNSG--------- 239 (385)
Q Consensus 198 ~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v----------------------------~~~a--------- 239 (385)
..|.|-+.|.+. +..+++.|.++.|..++--+..+.+. .-..
T Consensus 158 g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~ 237 (604)
T KOG4500|consen 158 GVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVR 237 (604)
T ss_pred HHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhc
Confidence 889887777655 56778888888776665443332221 1111
Q ss_pred -------HHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh--------HHHHHHHHHHHHhcCCCccchhhhhchhH
Q 016639 240 -------FAVVAASATGNEVVKESYMELKIDELILEILSRQRN--------DSIQSLYDAIRVLLTPDDDQVVASQVYGY 304 (385)
Q Consensus 240 -------~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~--------~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~ 304 (385)
+-++.. ...|+..|-.+++.|.++.++++++.... ...+-+|....-|.++||..
T Consensus 238 ~d~~eM~feila~-~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSM--------- 307 (604)
T KOG4500|consen 238 EDIDEMIFEILAK-AAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESM--------- 307 (604)
T ss_pred cchhhHHHHHHHH-HhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHH---------
Confidence 122222 22455566677888999999999987433 34445777777777777632
Q ss_pred HHHHHhcC-cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHh-cCCcCcHHHHHHHHHHH
Q 016639 305 ARRFAKIG-IARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD-SGLQGNKTVARICCSLL 382 (385)
Q Consensus 305 a~~I~e~G-gi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~-~~~~~~~~v~k~a~~~L 382 (385)
.++...+ .++-++..+++. |...+-....++.|+|.++.+|..+++.|-+.+|++++.. +...+|-+++..||++|
T Consensus 308 -q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsAL 385 (604)
T KOG4500|consen 308 -QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSAL 385 (604)
T ss_pred -HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHH
Confidence 1344444 577788888774 5567777888999999999999999999999999998655 77778889999999999
Q ss_pred hcC
Q 016639 383 SKV 385 (385)
Q Consensus 383 r~l 385 (385)
|||
T Consensus 386 Rnl 388 (604)
T KOG4500|consen 386 RNL 388 (604)
T ss_pred Hhc
Confidence 996
No 20
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.16 E-value=6.4e-09 Score=99.07 Aligned_cols=192 Identities=14% Similarity=0.135 Sum_probs=157.7
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
+.++.|...+.... ++.....++..+...+. .+.++..+.+.|+++.+..+|.. +++.+...|+++|.
T Consensus 12 ~~l~~Ll~lL~~t~------dp~i~e~al~al~n~aa---f~~nq~~Ir~~Ggi~lI~~lL~~---p~~~vr~~AL~aL~ 79 (254)
T PF04826_consen 12 QELQKLLCLLESTE------DPFIQEKALIALGNSAA---FPFNQDIIRDLGGISLIGSLLND---PNPSVREKALNALN 79 (254)
T ss_pred HHHHHHHHHHhcCC------ChHHHHHHHHHHHhhcc---ChhHHHHHHHcCCHHHHHHHcCC---CChHHHHHHHHHHH
Confidence 56889999988542 77888888999999765 79999999999999999999998 48899999999999
Q ss_pred HHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (385)
Q Consensus 202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A 281 (385)
|++.+.+.+..+ +. .++.+++.+.++.-+.+++..++++|.+++..++ ....+ .+.++.++.+|.+++..++..+
T Consensus 80 Nls~~~en~~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l--~~~i~~ll~LL~~G~~~~k~~v 154 (254)
T PF04826_consen 80 NLSVNDENQEQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YHHML--ANYIPDLLSLLSSGSEKTKVQV 154 (254)
T ss_pred hcCCChhhHHHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hhhhH--HhhHHHHHHHHHcCChHHHHHH
Confidence 998876554433 32 5777888777666788999999999999976544 44444 3589999999999988888889
Q ss_pred HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (385)
Q Consensus 282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~L 340 (385)
..+|.||+.+.+ ..+.+..+.++..++.++....+.+++..+.....|+
T Consensus 155 Lk~L~nLS~np~----------~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 155 LKVLVNLSENPD----------MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENI 203 (254)
T ss_pred HHHHHHhccCHH----------HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHH
Confidence 999999987654 3567888889999999998865677888888888888
No 21
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.89 E-value=7.6e-08 Score=94.42 Aligned_cols=217 Identities=7% Similarity=0.013 Sum_probs=156.1
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHH------cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATK------NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT 215 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~------~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~ 215 (385)
+.+.+...|.-+.+++.. ++.....+.. ...+.+++.++.+ +|.-+...|+..|+.++...+.+..-..
T Consensus 70 ~~d~v~yvL~li~dll~~--~~~~~~~~~~~~~~~~~~~~~~fl~ll~~---~D~~i~~~a~~iLt~Ll~~~~~~~~~~~ 144 (312)
T PF03224_consen 70 NDDTVQYVLTLIDDLLSD--DPSRVELFLELAKQDDSDPYSPFLKLLDR---NDSFIQLKAAFILTSLLSQGPKRSEKLV 144 (312)
T ss_dssp -HHHHHHHHHHHHHHHH---SSSSHHHHHHHHH-TTH--HHHHHHH-S----SSHHHHHHHHHHHHHHHTSTTT--HHHH
T ss_pred cHHHHHHHHHHHHHHHhc--CHHHHHHHHHhcccccchhHHHHHHHhcC---CCHHHHHHHHHHHHHHHHcCCccccchH
Confidence 678899999999999996 7766665544 1257888887776 5888999999999999876554333323
Q ss_pred CCCcHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHH-----ccCCh--HHHHHHHHHHH
Q 016639 216 GGGPKLLVNILIDGNE--DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL-----SRQRN--DSIQSLYDAIR 286 (385)
Q Consensus 216 ~ggi~~Lv~lL~~~~~--~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL-----~~~~~--~v~k~A~~aL~ 286 (385)
.+.++.+++.|++... +.+++..++.++.++. ..+..|..|.+.|+++.|+.+| .++.. ..+=+++-+++
T Consensus 145 ~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL-~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW 223 (312)
T PF03224_consen 145 KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLL-RSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW 223 (312)
T ss_dssp HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHH-TSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHh-CcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence 5667888999886433 3445688889999886 7899999999999999999999 22222 55556999999
Q ss_pred HhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChH--HHHHHHHcCcHHHHHHHHH
Q 016639 287 VLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE--ICKSVAENGGIDALLRCID 364 (385)
Q Consensus 287 ~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e--~c~~I~e~GGl~~Lv~ll~ 364 (385)
-|+++.++ +..+.+.+.|+.|+++++......+.+-++++|.||...+. ++..++.+|+++.+..+..
T Consensus 224 lLSF~~~~----------~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~ 293 (312)
T PF03224_consen 224 LLSFEPEI----------AEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE 293 (312)
T ss_dssp HHTTSHHH----------HHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred HHhcCHHH----------HHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence 99987654 44577888999999999997666788999999999998765 9999999999998866655
Q ss_pred hcCCcCcHHHHH
Q 016639 365 DSGLQGNKTVAR 376 (385)
Q Consensus 365 ~~~~~~~~~v~k 376 (385)
..-.+ .++..
T Consensus 294 rk~~D--edl~e 303 (312)
T PF03224_consen 294 RKWSD--EDLTE 303 (312)
T ss_dssp S--SS--HHHHH
T ss_pred CCCCC--HHHHH
Confidence 43333 35543
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.83 E-value=4.4e-07 Score=94.74 Aligned_cols=208 Identities=13% Similarity=0.097 Sum_probs=167.0
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPK 220 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~ 220 (385)
+.+.+..++..|..+.+. . .-... ..+..+.|...|.+ .++.+...++++|..+....+. .+.+.+.+.++
T Consensus 51 ~~e~v~~~~~iL~~~l~~--~-~~~~l--~~~~~~~L~~gL~h---~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~ 122 (503)
T PF10508_consen 51 NREQVELICDILKRLLSA--L-SPDSL--LPQYQPFLQRGLTH---PSPKVRRLALKQLGRIARHSEGAAQLLVDNELLP 122 (503)
T ss_pred ChHHHHHHHHHHHHHHhc--c-CHHHH--HHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHH
Confidence 567777777888888775 2 21222 44567778888887 4889999999999998876544 35667889999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhh
Q 016639 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQ 300 (385)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~ 300 (385)
.++.+|.+ ++.++...|+.+|..++. ++...+.+++.+++..|..++...++.++-.++.++..++ +.
T Consensus 123 ~i~~~L~~--~d~~Va~~A~~~L~~l~~-~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~---------~~ 190 (503)
T PF10508_consen 123 LIIQCLRD--PDLSVAKAAIKALKKLAS-HPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA---------SH 190 (503)
T ss_pred HHHHHHcC--CcHHHHHHHHHHHHHHhC-CchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH---------hc
Confidence 99999985 688999999999999985 6667778889999999999998866556667888888885 33
Q ss_pred chhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcC
Q 016639 301 VYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQG 370 (385)
Q Consensus 301 a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~ 370 (385)
+.+....+.+.|.++.++..|+. .|.-++.+++.+|..||..+...+-+++.|.++.|.+.+.+..+++
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~-dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp 259 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDS-DDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDP 259 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcC-ccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCC
Confidence 44666677789999999999988 4666788999999999999999999999999999999998754443
No 23
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.77 E-value=1.1e-06 Score=89.27 Aligned_cols=235 Identities=12% Similarity=0.085 Sum_probs=169.1
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~ 221 (385)
+.+.+.-++.+|..+.+. +..|..+.++++++.|+.+|+... .+..++-.++-+++-|+...+........+-|+.
T Consensus 157 ~~~~~~~~v~~L~~LL~~---~~~R~~f~~~~~v~~L~~~L~~~~-~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~ 232 (429)
T cd00256 157 NNDYVQTAARCLQMLLRV---DEYRFAFVLADGVPTLVKLLSNAT-LGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQD 232 (429)
T ss_pred CcchHHHHHHHHHHHhCC---chHHHHHHHccCHHHHHHHHhhcc-ccHHHHHHHHHHHHHHhccHHHHHhhccccHHHH
Confidence 345667778899999984 889999999999999999998642 2557888888888888766543344456788999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCCh------hhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHH--------HH
Q 016639 222 LVNILIDGNEDPEILNSGFAVVAASATGNE------VVKESYMELKIDELILEILSRQ-RNDSIQSLYDA--------IR 286 (385)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e------~nr~~iv~~G~i~~Lv~lL~~~-~~~v~k~A~~a--------L~ 286 (385)
++++++.. ...+|++-++.++.|+...+. .....+++.|+++.+-.+..++ +++-+.+.... +.
T Consensus 233 l~~i~k~s-~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k 311 (429)
T cd00256 233 LSDILKES-TKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQ 311 (429)
T ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999974 578999999999999987541 2334455666665554444332 44333332222 34
Q ss_pred HhcCCCccchhhhhc--------------hhHHHHHHhcC--cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHH
Q 016639 287 VLLTPDDDQVVASQV--------------YGYARRFAKIG--IARALVHSLHAGLSSPSLISASIALKAVAVND-EICKS 349 (385)
Q Consensus 287 ~Lt~~Dd~rv~~g~a--------------~~~a~~I~e~G--gi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~ 349 (385)
.||.=|..+.+.-.. .+|++.|-+.+ .++.|+++|....|+.++.-||.=++.++..- +-+..
T Consensus 312 ~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i 391 (429)
T cd00256 312 DLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDV 391 (429)
T ss_pred HcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHH
Confidence 455555555433221 28999998654 57999999976557778888899898888764 56677
Q ss_pred HHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 350 VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 350 I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+.+.||=+.++++|.+ +|.+|.++|+.++-+|
T Consensus 392 ~~~lg~K~~vM~Lm~h----~d~~Vr~eAL~avQkl 423 (429)
T cd00256 392 VEQLGGKQRVMRLLNH----EDPNVRYEALLAVQKL 423 (429)
T ss_pred HHHcCcHHHHHHHhcC----CCHHHHHHHHHHHHHH
Confidence 7789999999999974 5568999999887653
No 24
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=6.2e-07 Score=95.18 Aligned_cols=232 Identities=13% Similarity=0.089 Sum_probs=183.0
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHH
Q 016639 119 PLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLK 198 (385)
Q Consensus 119 ~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~ 198 (385)
|+-..+..|...+... .+.|-+..|+++|.++|.. -|....++++.++||.|++-|... ...++.+.+|.
T Consensus 208 pv~slvp~Lv~LL~~E------~n~DIMl~AcRaltyl~ev--lP~S~a~vV~~~aIPvl~~kL~~I--eyiDvAEQ~Lq 277 (1051)
T KOG0168|consen 208 PVKSLVPVLVALLSHE------HNFDIMLLACRALTYLCEV--LPRSSAIVVDEHAIPVLLEKLLTI--EYIDVAEQSLQ 277 (1051)
T ss_pred cHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHHHHhh--ccchhheeecccchHHHHHhhhhh--hhhHHHHHHHH
Confidence 5555566677777643 2789999999999999998 899899999999999999988765 46788999999
Q ss_pred HHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHHccCChHH
Q 016639 199 TMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE-VVKESYMELKIDELILEILSRQRNDS 277 (385)
Q Consensus 199 aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e-~nr~~iv~~G~i~~Lv~lL~~~~~~v 277 (385)
||-.|....+ .+++.+||+...+..|...+ ..+|+.|+...+|+|..-. +-=.-||+ .+|.|..+|..++...
T Consensus 278 ALE~iSR~H~--~AiL~AG~l~a~LsylDFFS--i~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~D~k~ 351 (1051)
T KOG0168|consen 278 ALEKISRRHP--KAILQAGALSAVLSYLDFFS--IHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLLSYQDKKP 351 (1051)
T ss_pred HHHHHHhhcc--HHHHhcccHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHHhhccchh
Confidence 9999887543 79999999999999998763 6778899999999886422 22234554 8999999999998889
Q ss_pred HHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC---CHHHHHHHHHHHHHhhcC-hHHHHHHHHc
Q 016639 278 IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL---SSPSLISASIALKAVAVN-DEICKSVAEN 353 (385)
Q Consensus 278 ~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~---~~~v~~~a~~aL~~La~~-~e~c~~I~e~ 353 (385)
+..+|-++..++.+ |....+--.++..+|.|.-...||.... +..+..-..++|+.++.+ +.......+.
T Consensus 352 ies~~ic~~ri~d~------f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~ 425 (1051)
T KOG0168|consen 352 IESVCICLTRIADG------FQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKL 425 (1051)
T ss_pred HHHHHHHHHHHHHh------cccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHh
Confidence 99999999888631 3333345557888999999999997743 234556677888889888 5677888889
Q ss_pred CcHHHHHHHHHhcCCcCcH
Q 016639 354 GGIDALLRCIDDSGLQGNK 372 (385)
Q Consensus 354 GGl~~Lv~ll~~~~~~~~~ 372 (385)
+..+.+.++|..+....|+
T Consensus 426 ~I~~~L~~il~g~s~s~na 444 (1051)
T KOG0168|consen 426 DIADTLKRILQGYSKSANA 444 (1051)
T ss_pred hHHHHHHHHHhccCcCccc
Confidence 9999999999887666553
No 25
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.68 E-value=6.7e-06 Score=85.94 Aligned_cols=185 Identities=11% Similarity=0.039 Sum_probs=148.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~ 221 (385)
++....-+++.|...... +......+.+.+.++.++.++.. .|..+...|.++|..|+......+.+++.+++..
T Consensus 90 ~~~Vr~l~l~~l~~~~~~--~~~~~~~~~~~~l~~~i~~~L~~---~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~ 164 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARH--SEGAAQLLVDNELLPLIIQCLRD---PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSK 164 (503)
T ss_pred CHHHHHHHHHHHHHHhcC--CHHHHHHhcCccHHHHHHHHHcC---CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHH
Confidence 677777888888888875 55556677889999999999987 5889999999999999876554566778899999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhc
Q 016639 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV 301 (385)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a 301 (385)
|..++.. .+..+....+.++.+++..+++....+++.|.++.++..|.+.+.-++.+++..|..|+..
T Consensus 165 L~~l~~~--~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~---------- 232 (503)
T PF10508_consen 165 LKSLMSQ--SSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET---------- 232 (503)
T ss_pred HHHHHhc--cCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC----------
Confidence 9999975 3567888999999999999999999999999999999999995556777899999999852
Q ss_pred hhHHHHHHhcCcHHHHHHHHhcCC-CH---H-HHHHHHHHHHHhhcC
Q 016639 302 YGYARRFAKIGIARALVHSLHAGL-SS---P-SLISASIALKAVAVN 343 (385)
Q Consensus 302 ~~~a~~I~e~Ggi~~Lv~lL~~~~-~~---~-v~~~a~~aL~~La~~ 343 (385)
.....+|.+.|+++.|++.+.... |+ . .+-.......+++..
T Consensus 233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~ 279 (503)
T PF10508_consen 233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV 279 (503)
T ss_pred hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc
Confidence 244678899999999999998765 44 1 122333455566653
No 26
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.66 E-value=8.4e-07 Score=98.30 Aligned_cols=256 Identities=14% Similarity=0.168 Sum_probs=176.0
Q ss_pred hhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHH-HHHcC----------------CCCCCCccCCCCCCCCCCchHH-
Q 016639 60 TVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQT-LSLQG----------------VDLSGIVKCVPGESSLKDNPLI- 121 (385)
Q Consensus 60 ~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~q-fe~QG----------------vdLsni~~~~~~~~~~~~~~v~- 121 (385)
|...|=-..|||=-|--|.+++ .-+||.+.|+- .+..| ..|.|+.-+ +...+.-+
T Consensus 318 A~~~lMK~SFDEEhR~aM~ELG--~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFG-----Dv~NKa~LC 390 (2195)
T KOG2122|consen 318 ALCTLMKLSFDEEHRHAMNELG--GLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFG-----DVANKATLC 390 (2195)
T ss_pred HHHHHHHhhccHHHHHHHHHhh--hHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccc-----cccchhhhh
Confidence 4566777899999888898876 56889888876 46666 344455222 11112222
Q ss_pred ---HHHHHHHHHhhcCCCCCCcccHHHHHHH-HHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHH
Q 016639 122 ---QSLERLKQLDLNSKDKFSDEDLNEMMGL-FDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCL 197 (385)
Q Consensus 122 ---~al~~L~~~l~~~~~~~~~~~~~~~~~a-l~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al 197 (385)
.+++.+..-+.+ ..|++.+. ...|++++=. .+..-+..+.+.|-+..|+..-.... .+..+...|
T Consensus 391 s~rgfMeavVAQL~s--------~peeL~QV~AsvLRNLSWR-AD~nmKkvLrE~GsVtaLa~~al~~~--kEsTLKavL 459 (2195)
T KOG2122|consen 391 SQRGFMEAVVAQLIS--------APEELLQVYASVLRNLSWR-ADSNMKKVLRETGSVTALAACALRNK--KESTLKAVL 459 (2195)
T ss_pred hhhhHHHHHHHHHhc--------ChHHHHHHHHHHHHhcccc-ccccHHHHHHhhhhHHHHHHHHHHhc--ccchHHHHH
Confidence 578888888876 34444443 4457777655 35666778899999999998643321 223344444
Q ss_pred HHHHHHhcC-CccchhHh-hCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHH---HhcCChhhHHHHHhCCChHHHHHHH
Q 016639 198 KTMALLVHD-VQSTETFR-TGGGPKLLVNILIDG--NEDPEILNSGFAVVAA---SATGNEVVKESYMELKIDELILEIL 270 (385)
Q Consensus 198 ~aLa~L~~~-~~~~~~i~-~~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~~---~~~~~e~nr~~iv~~G~i~~Lv~lL 270 (385)
.+||||... .+++.+|- -.|++.+|+.+|.-. ..--.|+..|-.+|+| ..+.+|..||.+-+.+.|..|+..|
T Consensus 460 SALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~L 539 (2195)
T KOG2122|consen 460 SALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHL 539 (2195)
T ss_pred HHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHh
Confidence 555555433 33344553 468899999999743 2334455555444444 3346899999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639 271 SRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN 343 (385)
Q Consensus 271 ~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~ 343 (385)
++|+.-++.|+|++|+||..- ..+.+.+|...|+++-|..++++. ++-+..-...+|.||...
T Consensus 540 KS~SLTiVSNaCGTLWNLSAR---------~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~ 602 (2195)
T KOG2122|consen 540 KSHSLTIVSNACGTLWNLSAR---------SPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNF 602 (2195)
T ss_pred hhcceEEeecchhhhhhhhcC---------CHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcC
Confidence 999998999999999999742 336667889999999999999884 655556677788888543
No 27
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.7e-06 Score=90.47 Aligned_cols=204 Identities=9% Similarity=0.051 Sum_probs=157.0
Q ss_pred ccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCc
Q 016639 141 EDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGP 219 (385)
Q Consensus 141 ~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi 219 (385)
+++..+.+++.+|++...- .+++.-..+.-.-.+|.|+.||+.. .+.++...|+++|++|+.--+. ...+++.++|
T Consensus 180 ~Des~Qleal~Elce~L~m-gnEesLs~fpv~slvp~Lv~LL~~E--~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aI 256 (1051)
T KOG0168|consen 180 SDESQQLEALTELCEMLSM-GNEESLSGFPVKSLVPVLVALLSHE--HNFDIMLLACRALTYLCEVLPRSSAIVVDEHAI 256 (1051)
T ss_pred CChHHHHHHHHHHHHHHhh-cchhhhccccHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHhhccchhheeecccch
Confidence 4777888888888888764 2444333444456799999999975 4688999999999999976443 4678899999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc---CCCccch
Q 016639 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL---TPDDDQV 296 (385)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt---~~Dd~rv 296 (385)
|.+++=|..- +=.++...++.+|..+...|. .+|.++|+|...+.-|.-.+..+|+.|.+...|.+ ..|+
T Consensus 257 Pvl~~kL~~I-eyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~--- 329 (1051)
T KOG0168|consen 257 PVLLEKLLTI-EYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDE--- 329 (1051)
T ss_pred HHHHHhhhhh-hhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc---
Confidence 9998877542 345788888899988877665 67889999999999998888899999999999997 2333
Q ss_pred hhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC----hHHHHHHHHcCcHHHHHHHHHh
Q 016639 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN----DEICKSVAENGGIDALLRCIDD 365 (385)
Q Consensus 297 ~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~----~e~c~~I~e~GGl~~Lv~ll~~ 365 (385)
-+.+++ .+|.|..+|+.+ ++..++.+|..+.+++-. .+--+++...|-|.-+..++.-
T Consensus 330 --------f~~v~e--alPlL~~lLs~~-D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 330 --------FHFVME--ALPLLTPLLSYQ-DKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV 391 (1051)
T ss_pred --------chHHHH--HHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence 234666 599999999886 666778888888888643 4555777788888777777654
No 28
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.56 E-value=2.2e-06 Score=84.08 Aligned_cols=195 Identities=17% Similarity=0.134 Sum_probs=134.8
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc-hhHhhC------CCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTG------GGPKLLVNILIDGNEDPEILNSGFAVVAAS 246 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~-~~i~~~------ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~ 246 (385)
....++.+|++. ..+.+++...+..+..|+.+.+.+ +.+.+. .-...++++|.+ +|.-+...++..+..+
T Consensus 56 ~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~--~D~~i~~~a~~iLt~L 132 (312)
T PF03224_consen 56 YASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR--NDSFIQLKAAFILTSL 132 (312)
T ss_dssp ------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC--CCHHHHHHHHHHHHHH
Confidence 366778888775 236778888899999999887665 334331 135666776654 4888899999999998
Q ss_pred hcCChhhHHHHHhCCChHHHHHHHccCC----hHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHh
Q 016639 247 ATGNEVVKESYMELKIDELILEILSRQR----NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH 322 (385)
Q Consensus 247 ~~~~e~nr~~iv~~G~i~~Lv~lL~~~~----~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~ 322 (385)
+...+....... .+.++.++..|++.. .+++.-++.+|.+|...+..|. .+.+.|+++.|..+|+
T Consensus 133 l~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~----------~f~~~~~v~~l~~iL~ 201 (312)
T PF03224_consen 133 LSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQ----------VFWKSNGVSPLFDILR 201 (312)
T ss_dssp HTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHH----------HHHTHHHHHHHHHHHH
T ss_pred HHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHH----------HHHhcCcHHHHHHHHH
Confidence 876554433322 567788888887632 2566779999999987666554 4778999999999993
Q ss_pred -----cCC-CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 323 -----AGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 323 -----~~~-~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
... +..++=+++..++-|..+++++..+...+-++.|.++++... -+.|.|-|++.||||
T Consensus 202 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~---KEKvvRv~la~l~Nl 267 (312)
T PF03224_consen 202 KQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI---KEKVVRVSLAILRNL 267 (312)
T ss_dssp ---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH-----SHHHHHHHHHHHHHT
T ss_pred hhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc---cchHHHHHHHHHHHH
Confidence 222 335566889999999999999999999999999999999854 348999999999997
No 29
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=98.50 E-value=6.1e-06 Score=82.42 Aligned_cols=213 Identities=15% Similarity=0.130 Sum_probs=152.0
Q ss_pred HHHHHHHHhcCCCChhhHHHHHH----cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHH
Q 016639 149 LFDKLIELCGGNEGSVNAAVATK----NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLV 223 (385)
Q Consensus 149 al~~L~~lc~~~~~~~~r~~~~~----~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv 223 (385)
+-.++....+ ++-.|..+.+ +|+++.|.+...+ .|.++...++++|+|+|-+++. |..|.+.||-..++
T Consensus 62 qssC~A~~sk---~ev~r~~F~~~~I~a~~le~Lrq~psS---~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivi 135 (604)
T KOG4500|consen 62 QSSCLADRSK---NEVERSLFRNYCIDAEALELLRQTPSS---PDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVI 135 (604)
T ss_pred hHHHHHHHhh---hHHHHHHHHHHhhHHHHHHHHHhCCCC---CcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehH
Confidence 3344555554 4555665544 4556666665555 3678999999999999987655 78899999999999
Q ss_pred HHHhcCC-----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-HHHHH-HHHHHHHhcCCCccch
Q 016639 224 NILIDGN-----EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQS-LYDAIRVLLTPDDDQV 296 (385)
Q Consensus 224 ~lL~~~~-----~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k~-A~~aL~~Lt~~Dd~rv 296 (385)
++|+... .+.+...-++.+|.|-..+++.-+..+++.|+++.|..++.-|-. ..+.+ ......+|..
T Consensus 136 d~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls------ 209 (604)
T KOG4500|consen 136 DVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLS------ 209 (604)
T ss_pred hhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHH------
Confidence 9997643 345678888999999999999999999999999999999977633 22333 3333333321
Q ss_pred hhhhchhHHHHH-HhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHH
Q 016639 297 VASQVYGYARRF-AKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA 375 (385)
Q Consensus 297 ~~g~a~~~a~~I-~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~ 375 (385)
| --++-.-+ ........++.+|.+..+++..+-.+..|...+-+++.|-.+++.|-++.++++++.+.+..++.-.
T Consensus 210 -~--~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~ 286 (604)
T KOG4500|consen 210 -F--VCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDM 286 (604)
T ss_pred -H--HHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHH
Confidence 0 00111112 2455677888888886566566667788888899999999999999999999999987666654443
Q ss_pred H
Q 016639 376 R 376 (385)
Q Consensus 376 k 376 (385)
.
T Consensus 287 ~ 287 (604)
T KOG4500|consen 287 L 287 (604)
T ss_pred H
Confidence 3
No 30
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.3e-05 Score=78.63 Aligned_cols=147 Identities=15% Similarity=0.190 Sum_probs=127.6
Q ss_pred cccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCC
Q 016639 140 DEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGG 218 (385)
Q Consensus 140 ~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~gg 218 (385)
+.+++....++..|.+++. +-+|..-+...||..+|+..+.+ .+..+...|.++|+....+++. ...+++.||
T Consensus 94 s~~le~ke~ald~Le~lve---~iDnAndl~~~ggl~~ll~~l~~---~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~ 167 (342)
T KOG2160|consen 94 SVDLEDKEDALDNLEELVE---DIDNANDLISLGGLVPLLGYLEN---SDAELRELAARVIGTAVQNNPKSQEQVIELGA 167 (342)
T ss_pred cCCHHHHHHHHHHHHHHHH---hhhhHHhHhhccCHHHHHHHhcC---CcHHHHHHHHHHHHHHHhcCHHHHHHHHHccc
Confidence 4488999999999999997 68999999999999999998887 4889999999999999888765 478899999
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC--ChHHHHHHHHHHHHhcCCCc
Q 016639 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ--RNDSIQSLYDAIRVLLTPDD 293 (385)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~--~~~v~k~A~~aL~~Lt~~Dd 293 (385)
++.|+..|.+ .++..+...++.+++.+...++.-...|-..+|...|..+|++. +...++-+...+..|+..+.
T Consensus 168 L~~Ll~~ls~-~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 168 LSKLLKILSS-DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHHHHHcc-CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 9999999995 45667778889999999989999999999999999999999995 44667778888998875443
No 31
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.35 E-value=6.5e-07 Score=60.99 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=37.7
Q ss_pred ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 250 NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 250 ~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
+++|++.|++.|++|+|+.+|++.+.+++++|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999888899999999999996
No 32
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5e-05 Score=74.56 Aligned_cols=166 Identities=20% Similarity=0.194 Sum_probs=128.7
Q ss_pred CcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 016639 188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL 267 (385)
Q Consensus 188 ~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv 267 (385)
.+.+-...|+..|-.++.+-|.-.+++..||..+++..|.+ .+.++...|+|+|..+...|+..++.+++.|+++.|+
T Consensus 95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~--~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll 172 (342)
T KOG2160|consen 95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLEN--SDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL 172 (342)
T ss_pred CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence 35667888899999988876666899999999999998875 6889999999999999999999999999999999999
Q ss_pred HHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcChH
Q 016639 268 EILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDE 345 (385)
Q Consensus 268 ~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~~e 345 (385)
..|.+..+ .+...|..|+++|..+... -...+...+|...|.++|.... +...+.-+...+..|...+.
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~---------g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKP---------GQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcH---------HHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 99987654 6778899999999754431 1234667888999999999964 55667778888888876543
Q ss_pred HHHHHHHcCcHHHHHHHHH
Q 016639 346 ICKSVAENGGIDALLRCID 364 (385)
Q Consensus 346 ~c~~I~e~GGl~~Lv~ll~ 364 (385)
.-..|...=|.+..+..+.
T Consensus 244 s~~d~~~~~~f~~~~~~l~ 262 (342)
T KOG2160|consen 244 SDEDIASSLGFQRVLENLI 262 (342)
T ss_pred hhhhHHHHhhhhHHHHHHh
Confidence 3333444444444443333
No 33
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.26 E-value=8.1e-05 Score=74.33 Aligned_cols=246 Identities=13% Similarity=0.039 Sum_probs=175.0
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~ 202 (385)
....|+..+.++. +.+.+.-+.++|..+.+ -+++|..+..++|+..|+..+.+. ..+-.++-..+-+++-
T Consensus 157 ~~~~l~~~l~~~~------~~~~~~~~~rcLQ~ll~---~~eyR~~~v~adg~~~l~~~l~s~-~~~~QlQYqsifciWl 226 (442)
T KOG2759|consen 157 YKGFLKEQLQSST------NNDYIQFAARCLQTLLR---VDEYRYAFVIADGVSLLIRILAST-KCGFQLQYQSIFCIWL 226 (442)
T ss_pred HHHHHHHHHhccC------CCchHHHHHHHHHHHhc---CcchhheeeecCcchhhHHHHhcc-CcchhHHHHHHHHHHH
Confidence 4445555555421 55778888999999998 599999999999999999999522 2466777777788887
Q ss_pred HhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh------hhHHHHHhCCChHHHHHHHcc--CC
Q 016639 203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE------VVKESYMELKIDELILEILSR--QR 274 (385)
Q Consensus 203 L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e------~nr~~iv~~G~i~~Lv~lL~~--~~ 274 (385)
|+-.....+.+...+-|+.|.++++.. ...+|.+-.+.+++|++.+.+ +....++. +.++..++.|.. .+
T Consensus 227 LtFn~~~ae~~~~~~li~~L~~Ivk~~-~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~-~~v~k~l~~L~~rkys 304 (442)
T KOG2759|consen 227 LTFNPHAAEKLKRFDLIQDLSDIVKES-TKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL-CKVLKTLQSLEERKYS 304 (442)
T ss_pred hhcCHHHHHHHhhccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh-cCchHHHHHHHhcCCC
Confidence 776554445566678899999999874 467899999999999998874 22334444 445555566644 34
Q ss_pred hHHHHHHHHHHH--------HhcCCCccchhh--hh-----c-------hhHHHHHHhc--CcHHHHHHHHhcCCCHHHH
Q 016639 275 NDSIQSLYDAIR--------VLLTPDDDQVVA--SQ-----V-------YGYARRFAKI--GIARALVHSLHAGLSSPSL 330 (385)
Q Consensus 275 ~~v~k~A~~aL~--------~Lt~~Dd~rv~~--g~-----a-------~~~a~~I~e~--Ggi~~Lv~lL~~~~~~~v~ 330 (385)
++-+.+...-|. .|+.-|+...+. |+ . ++|+.++-+. -.++.|+.+|++..|+.++
T Consensus 305 DEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL 384 (442)
T KOG2759|consen 305 DEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIIL 384 (442)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCcee
Confidence 433333332222 244444433321 11 1 3999999865 4799999999997678788
Q ss_pred HHHHHHHHHhhc-ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 331 ISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 331 ~~a~~aL~~La~-~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
.-||.=+..... .++....+...||=+.++++|.. +|.+|-..|+.++-+
T Consensus 385 ~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh----~d~~Vry~ALlavQ~ 435 (442)
T KOG2759|consen 385 CVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNH----EDPEVRYHALLAVQK 435 (442)
T ss_pred ehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcC----CCchHHHHHHHHHHH
Confidence 888888888765 47999999999999999999953 444788888877654
No 34
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.22 E-value=0.00031 Score=71.66 Aligned_cols=206 Identities=7% Similarity=0.017 Sum_probs=145.8
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-----CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhC
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN-----GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG 216 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-----Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ 216 (385)
..+.+...|.-+.+++.. ++.....+.+. +.+.+++.+|.+ +|.-+...++..|+.++.....+ .+.
T Consensus 67 ~~d~vqyvL~Li~dll~~--~~~~~~~f~~~~~~~~~~~~~fl~lL~~---~d~~i~~~a~~iLt~l~~~~~~~---~~~ 138 (429)
T cd00256 67 KDDTVRYVLTLIDDMLQE--DDTRVKLFHDDALLKKKTWEPFFNLLNR---QDQFIVHMSFSILAKLACFGLAK---MEG 138 (429)
T ss_pred cHHHHHHHHHHHHHHHHh--chHHHHHHHHHhhccccchHHHHHHHcC---CchhHHHHHHHHHHHHHhcCccc---cch
Confidence 557777788888888875 66655555553 578888898876 47788899999999987542211 111
Q ss_pred CCcH----HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh--HHHHHHHHHHHHhcC
Q 016639 217 GGPK----LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLT 290 (385)
Q Consensus 217 ggi~----~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~--~v~k~A~~aL~~Lt~ 290 (385)
..++ .+...|+.. ++...+.-+..++..+. ..+..|..|.+.+++++|+.+|+.... ..+=+++-+++-|++
T Consensus 139 ~~l~~~~~~l~~~l~~~-~~~~~~~~~v~~L~~LL-~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF 216 (429)
T cd00256 139 SDLDYYFNWLKEQLNNI-TNNDYVQTAARCLQMLL-RVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTF 216 (429)
T ss_pred hHHHHHHHHHHHHhhcc-CCcchHHHHHHHHHHHh-CCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhc
Confidence 1233 334444432 34555666677887765 567899999999999999999988652 455568999999998
Q ss_pred CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-------hHHHHHHHHcCcHHHHHHHH
Q 016639 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-------DEICKSVAENGGIDALLRCI 363 (385)
Q Consensus 291 ~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-------~e~c~~I~e~GGl~~Lv~ll 363 (385)
..+. +....+.|.|+.|+++++...-..+.+-++.+|.||... ..++..++++|.++.+..+.
T Consensus 217 ~~~~----------~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~l~~L~ 286 (429)
T cd00256 217 NPHA----------AEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKTLQSLE 286 (429)
T ss_pred cHHH----------HHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHHHHHHh
Confidence 6652 123446799999999999965556888899999999873 35678888888887775555
Q ss_pred HhcC
Q 016639 364 DDSG 367 (385)
Q Consensus 364 ~~~~ 367 (385)
...-
T Consensus 287 ~rk~ 290 (429)
T cd00256 287 QRKY 290 (429)
T ss_pred cCCC
Confidence 4433
No 35
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.94 E-value=0.00046 Score=72.22 Aligned_cols=141 Identities=14% Similarity=0.139 Sum_probs=101.2
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh
Q 016639 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK 310 (385)
Q Consensus 231 ~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e 310 (385)
.+....++||-++.+....-..-|..+-...++.+||.+|..+...+...+.++|.||.+. ||. ....+.+
T Consensus 389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVme------fs~---~kskfl~ 459 (678)
T KOG1293|consen 389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVME------FSN---LKSKFLR 459 (678)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhh------ccc---HHHHHHH
Confidence 4566667777666665443333334444567899999999887778899999999999853 221 2334778
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh--HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 311 IGIARALVHSLHAGLSSPSLISASIALKAVAVND--EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 311 ~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~--e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
.|||+.|...+.++ +..++....|+|+++..+. +...+...-=+-..|+.+..+ ++-.|+.||+.+||||
T Consensus 460 ~ngId~l~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd----~d~~Vqeq~fqllRNl 531 (678)
T KOG1293|consen 460 NNGIDILESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLIND----PDWAVQEQCFQLLRNL 531 (678)
T ss_pred cCcHHHHHHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhC----CCHHHHHHHHHHHHHh
Confidence 99999999999886 6678899999999999874 344444444444555555543 3347999999999996
No 36
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.87 E-value=2.7e-05 Score=52.88 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=37.0
Q ss_pred ChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHh
Q 016639 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV 204 (385)
Q Consensus 162 ~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~ 204 (385)
+++++..+.+.|++|+|+.+|++ .+.+++..|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~---~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKS---PDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTS---SSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcC---CCHHHHHHHHHHHHHHh
Confidence 47889999999999999999996 58999999999999986
No 37
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.85 E-value=4e-05 Score=51.28 Aligned_cols=39 Identities=13% Similarity=0.137 Sum_probs=35.9
Q ss_pred hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 251 EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 251 e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
++++..+++.|++++|+.+|.+.+.++++.++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 358899999999999999999877899999999999997
No 38
>PRK09687 putative lyase; Provisional
Probab=97.72 E-value=0.0014 Score=63.54 Aligned_cols=139 Identities=13% Similarity=0.103 Sum_probs=78.2
Q ss_pred cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (385)
Q Consensus 189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~ 268 (385)
+..+...+.++|+.+- +..+++.|+.+|++ ++..|...++.+|..+...++ .+++.|+.
T Consensus 141 ~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d--~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~ 199 (280)
T PRK09687 141 STNVRFAVAFALSVIN----------DEAAIPLLINLLKD--PNGDVRNWAAFALNSNKYDNP---------DIREAFVA 199 (280)
T ss_pred CHHHHHHHHHHHhccC----------CHHHHHHHHHHhcC--CCHHHHHHHHHHHhcCCCCCH---------HHHHHHHH
Confidence 4555555555554331 12355666666654 345566666666655422222 24455666
Q ss_pred HHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHH
Q 016639 269 ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICK 348 (385)
Q Consensus 269 lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~ 348 (385)
+|......|.++|.++|..+- ..-++++|++.|... + +...++.+|..+...
T Consensus 200 ~L~D~~~~VR~~A~~aLg~~~--------------------~~~av~~Li~~L~~~-~--~~~~a~~ALg~ig~~----- 251 (280)
T PRK09687 200 MLQDKNEEIRIEAIIGLALRK--------------------DKRVLSVLIKELKKG-T--VGDLIIEAAGELGDK----- 251 (280)
T ss_pred HhcCCChHHHHHHHHHHHccC--------------------ChhHHHHHHHHHcCC-c--hHHHHHHHHHhcCCH-----
Confidence 666555566666666665432 112477888887663 2 444566666655442
Q ss_pred HHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 349 SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 349 ~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
-.++.|..++..++ +..+.+.+..+|.+
T Consensus 252 -----~a~p~L~~l~~~~~---d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -----TLLPVLDTLLYKFD---DNEIITKAIDKLKR 279 (280)
T ss_pred -----hHHHHHHHHHhhCC---ChhHHHHHHHHHhc
Confidence 35677778887654 33677777777654
No 39
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.67 E-value=0.0014 Score=66.64 Aligned_cols=175 Identities=13% Similarity=0.151 Sum_probs=128.5
Q ss_pred HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 016639 170 TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG 249 (385)
Q Consensus 170 ~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~ 249 (385)
.+...+..||..|... +.+++.....-|--|.--.+++......|-++-|+++.-. .++++...++..+.|+..
T Consensus 301 rrkniV~mLVKaLdr~---n~~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~--~h~dL~~~tl~LlfNlSF- 374 (791)
T KOG1222|consen 301 RRKNIVAMLVKALDRS---NSSLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPI--QHPDLRKATLMLLFNLSF- 374 (791)
T ss_pred HHHhHHHHHHHHHccc---chHHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCC--CCHHHHHHHHHHhhhccc-
Confidence 4556778888888763 4444433333333333323344556667778888888764 578999999999999876
Q ss_pred ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639 250 NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329 (385)
Q Consensus 250 ~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v 329 (385)
+..+|..++..|.+|.|+.+|.+.+. ..-|...+..|+.||+.+. +++...+|+.++..+-.+.+..+
T Consensus 375 D~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~----------MfayTdci~~lmk~v~~~~~~~v 442 (791)
T KOG1222|consen 375 DSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKA----------MFAYTDCIKLLMKDVLSGTGSEV 442 (791)
T ss_pred cccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHH----------HHHHHHHHHHHHHHHHhcCCcee
Confidence 45689999999999999999987653 3336778889999998765 46778899999998888766555
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHH
Q 016639 330 LISASIALKAVAVNDEICKSVAENGGIDALLRC 362 (385)
Q Consensus 330 ~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~l 362 (385)
-..+...--||+.+..+.+.+++-.|++.|++-
T Consensus 443 dl~lia~ciNl~lnkRNaQlvceGqgL~~LM~r 475 (791)
T KOG1222|consen 443 DLALIALCINLCLNKRNAQLVCEGQGLDLLMER 475 (791)
T ss_pred cHHHHHHHHHHHhccccceEEecCcchHHHHHH
Confidence 445555556888888899999998899988754
No 40
>PRK09687 putative lyase; Provisional
Probab=97.64 E-value=0.0069 Score=58.73 Aligned_cols=144 Identities=13% Similarity=0.040 Sum_probs=86.5
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (385)
+++.|..++... .++.|...|+.+|+.+..+... .....++.+...+.+ ++..|...++++|..+ +++
T Consensus 91 a~~~L~~l~~~D--~d~~VR~~A~~aLG~~~~~~~~----~~~~a~~~l~~~~~D--~~~~VR~~a~~aLg~~--~~~-- 158 (280)
T PRK09687 91 VFNILNNLALED--KSACVRASAINATGHRCKKNPL----YSPKIVEQSQITAFD--KSTNVRFAVAFALSVI--NDE-- 158 (280)
T ss_pred HHHHHHHHHhcC--CCHHHHHHHHHHHhcccccccc----cchHHHHHHHHHhhC--CCHHHHHHHHHHHhcc--CCH--
Confidence 456666653331 4667777777777776433210 111223333344443 3566777777777532 222
Q ss_pred HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHH
Q 016639 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333 (385)
Q Consensus 254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a 333 (385)
.+++.|+.+|...+..|...|+.+|..+..++ ...+++|+.+|... +..|...+
T Consensus 159 -------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~------------------~~~~~~L~~~L~D~-~~~VR~~A 212 (280)
T PRK09687 159 -------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDN------------------PDIREAFVAMLQDK-NEEIRIEA 212 (280)
T ss_pred -------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC------------------HHHHHHHHHHhcCC-ChHHHHHH
Confidence 26778888888777778888888887772211 12467899998664 77788888
Q ss_pred HHHHHHhhcChHHHHHHHHcCcHHHHHHHHHh
Q 016639 334 SIALKAVAVNDEICKSVAENGGIDALLRCIDD 365 (385)
Q Consensus 334 ~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~ 365 (385)
.++|..+... -+++.|++.+++
T Consensus 213 ~~aLg~~~~~----------~av~~Li~~L~~ 234 (280)
T PRK09687 213 IIGLALRKDK----------RVLSVLIKELKK 234 (280)
T ss_pred HHHHHccCCh----------hHHHHHHHHHcC
Confidence 8888776432 345555555554
No 41
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.53 E-value=0.0021 Score=67.39 Aligned_cols=187 Identities=10% Similarity=0.048 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHh-------------------cccCCcHhHHHHHHHHHHHHh
Q 016639 144 NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICY-------------------KMRCGSKRVLDSCLKTMALLV 204 (385)
Q Consensus 144 ~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~-------------------~~~~~d~~vl~~Al~aLa~L~ 204 (385)
....+.+.+-+++..+ .+.+|.++...-.++.-..... .....|....+.||-.+-++.
T Consensus 328 ~~~~ellf~~~sl~a~--~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~s 405 (678)
T KOG1293|consen 328 KTTTELLFICASLAAS--DEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFS 405 (678)
T ss_pred hhHHHHHHHHHHHhhc--chhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHH
Confidence 3445556666666665 7778877765544443221111 111135566777766666554
Q ss_pred cCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHH
Q 016639 205 HDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD 283 (385)
Q Consensus 205 ~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~ 283 (385)
..... +.-+-+.+++.+++++|.. ++.-|...++.+|.|+...--+-|..+.+.|+|+.|.+.+.+....+.+.+.|
T Consensus 406 rsV~aL~tg~~~~dv~~plvqll~d--p~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~ 483 (678)
T KOG1293|consen 406 RSVSALRTGLKRNDVAQPLVQLLMD--PEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLW 483 (678)
T ss_pred HHHHHHHcCCccchhHHHHHHHhhC--cchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHH
Confidence 33221 1124467889999999964 56788999999999999888888999999999999999999988889999999
Q ss_pred HHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639 284 AIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN 343 (385)
Q Consensus 284 aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~ 343 (385)
+||++.+++|+... ...-..=+..-|+.+... ++.+|++..+..|+||..+
T Consensus 484 ~Lr~l~f~~de~~k--------~~~~~ki~a~~i~~l~nd-~d~~Vqeq~fqllRNl~c~ 534 (678)
T KOG1293|consen 484 VLRHLMFNCDEEEK--------FQLLAKIPANLILDLIND-PDWAVQEQCFQLLRNLTCN 534 (678)
T ss_pred HHHHHHhcchHHHH--------HHHHHHhhHHHHHHHHhC-CCHHHHHHHHHHHHHhhcC
Confidence 99999999886532 122222223344454444 4778999999999999776
No 42
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.012 Score=63.13 Aligned_cols=219 Identities=14% Similarity=0.097 Sum_probs=145.9
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHH
Q 016639 119 PLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLK 198 (385)
Q Consensus 119 ~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~ 198 (385)
-+.+.++.|..-+.++. -++.-+.|+..|...+++ +|..++ +-|+++|+..|+.-. .|++.+..+|.
T Consensus 19 s~aETI~kLcDRvessT------L~eDRR~A~rgLKa~srk-----YR~~Vg-a~Gmk~li~vL~~D~-~D~E~ik~~Ld 85 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESST------LLEDRRDAVRGLKAFSRK-----YREEVG-AQGMKPLIQVLQRDY-MDPEIIKYALD 85 (970)
T ss_pred cHHhHHHHHHHHHhhcc------chhhHHHHHHHHHHHHHH-----HHHHHH-HcccHHHHHHHhhcc-CCHHHHHHHHH
Confidence 44577888887776542 578889999999999765 555554 455999999998643 47889999999
Q ss_pred HHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHH
Q 016639 199 TMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSI 278 (385)
Q Consensus 199 aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~ 278 (385)
++..++...+. +.+++ ++......--|++....++++ -|..|+..+...+..|+
T Consensus 86 Tl~il~~~dd~-~~v~d----------------ds~qsdd~g~~iae~fik~qd---------~I~lll~~~e~~DF~VR 139 (970)
T KOG0946|consen 86 TLLILTSHDDS-PEVMD----------------DSTQSDDLGLWIAEQFIKNQD---------NITLLLQSLEEFDFHVR 139 (970)
T ss_pred HHHHHHhcCcc-hhhcc----------------cchhhhHHHHHHHHHHHcCch---------hHHHHHHHHHhhchhhh
Confidence 99998876542 22211 122112222334444445544 56677889988888899
Q ss_pred HHHHHHHHHhcCCCccchhhhhchhHHHHHH-hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHc-CcH
Q 016639 279 QSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAEN-GGI 356 (385)
Q Consensus 279 k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~-GGl 356 (385)
..+.-.|.+|...-.- +-...|. .--||..|+++|+.. -..++-++...|..|...+...+.++.. .+-
T Consensus 140 ~~aIqLlsalls~r~~--------e~q~~ll~~P~gIS~lmdlL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaF 210 (970)
T KOG0946|consen 140 LYAIQLLSALLSCRPT--------ELQDALLVSPMGISKLMDLLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAF 210 (970)
T ss_pred hHHHHHHHHHHhcCCH--------HHHHHHHHCchhHHHHHHHHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHH
Confidence 9999999998532221 1122333 457899999999884 3336667788888888777766666654 467
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 357 DALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 357 ~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+.|+.++..-+....--|+..|+.+|-||
T Consensus 211 erLfsIIeeEGg~dGgIVveDCL~ll~NL 239 (970)
T KOG0946|consen 211 ERLFSIIEEEGGLDGGIVVEDCLILLNNL 239 (970)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence 77878877633222125778888877654
No 43
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.40 E-value=0.0045 Score=62.91 Aligned_cols=184 Identities=13% Similarity=0.106 Sum_probs=139.6
Q ss_pred HHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 016639 169 ATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASAT 248 (385)
Q Consensus 169 ~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~ 248 (385)
+...|++..|+.++.... -...+...|-+.|-.++.. ++++-++..| +..++.+-+. .+..+++...+..|.+.-.
T Consensus 176 iR~~~~lD~Llrmf~aPn-~et~vRve~~rlLEq~~~a-eN~d~va~~~-~~~Il~lAK~-~e~~e~aR~~~~il~~mFK 251 (832)
T KOG3678|consen 176 IRLDGGLDLLLRMFQAPN-LETSVRVEAARLLEQILVA-ENRDRVARIG-LGVILNLAKE-REPVELARSVAGILEHMFK 251 (832)
T ss_pred hhccchHHHHHHHHhCCc-hhHHHHHHHHHHHHHHHhh-hhhhHHhhcc-chhhhhhhhh-cCcHHHHHHHHHHHHHHhh
Confidence 445688999999998752 1235667777777766543 2334454444 6677666654 4678899999999999988
Q ss_pred CChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHH
Q 016639 249 GNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSP 328 (385)
Q Consensus 249 ~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~ 328 (385)
-.|+..+.++++|+++.++--.++..+...+.++-+|.|.++- +.++-.++|++..+.+-|.-+..+. |.-
T Consensus 252 HSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~--------~~~a~qrrmveKr~~EWLF~LA~sk-Del 322 (832)
T KOG3678|consen 252 HSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALH--------GGQAVQRRMVEKRAAEWLFPLAFSK-DEL 322 (832)
T ss_pred hhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhh--------chhHHHHHHHHhhhhhhhhhhhcch-HHH
Confidence 8888899999999999999888888888999999999998752 2235567788776777776665442 555
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHh
Q 016639 329 SLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD 365 (385)
Q Consensus 329 v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~ 365 (385)
+.-.+|.+...|+.+.|+-..+...|-+..+.-++..
T Consensus 323 ~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~ 359 (832)
T KOG3678|consen 323 LRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVAS 359 (832)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhc
Confidence 5668999999999999999999999998888777665
No 44
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.34 E-value=0.022 Score=61.17 Aligned_cols=206 Identities=13% Similarity=0.102 Sum_probs=151.1
Q ss_pred CcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchh-HhhC
Q 016639 139 SDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTET-FRTG 216 (385)
Q Consensus 139 ~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~-i~~~ 216 (385)
+..|...-.-++.-|..+.+. ..++-+.++... -||..|+.+|... .+.+...++--|..|+.++..-+. ++-.
T Consensus 132 e~~DF~VR~~aIqLlsalls~-r~~e~q~~ll~~P~gIS~lmdlL~Ds---rE~IRNe~iLlL~eL~k~n~~IQKlVAFE 207 (970)
T KOG0946|consen 132 EEFDFHVRLYAIQLLSALLSC-RPTELQDALLVSPMGISKLMDLLRDS---REPIRNEAILLLSELVKDNSSIQKLVAFE 207 (970)
T ss_pred HhhchhhhhHHHHHHHHHHhc-CCHHHHHHHHHCchhHHHHHHHHhhh---hhhhchhHHHHHHHHHccCchHHHHHHHH
Confidence 334777778888888888775 456666666554 6799999999863 455777888889999988766443 4456
Q ss_pred CCcHHHHHHHhcCC-CCH-HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh----------H---HHHHH
Q 016639 217 GGPKLLVNILIDGN-EDP-EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----------D---SIQSL 281 (385)
Q Consensus 217 ggi~~Lv~lL~~~~-~~~-~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~----------~---v~k~A 281 (385)
++-+.|..++.... -+. -|+..++..|.++...|-.|++-|-+.+-||.|.++|..+.. . -+-.+
T Consensus 208 NaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~ 287 (970)
T KOG0946|consen 208 NAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEA 287 (970)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHH
Confidence 77888888887643 233 468899999999999999999999999999999988865321 1 12237
Q ss_pred HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCh-HHHHHHH
Q 016639 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVND-EICKSVA 351 (385)
Q Consensus 282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~~-e~c~~I~ 351 (385)
..++|.|...+.- .+-+|.+.+.+...+++..||.++-+.. ..+++.....+++++...| .+...++
T Consensus 288 Lqivr~lVsP~Nt---~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~ 356 (970)
T KOG0946|consen 288 LQIVRSLVSPGNT---SSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFA 356 (970)
T ss_pred HHHHHHhcCCCCc---HHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHh
Confidence 7788888766542 3556778888999999999999997753 4577877777888776544 3444444
No 45
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0064 Score=62.04 Aligned_cols=166 Identities=14% Similarity=0.075 Sum_probs=133.1
Q ss_pred cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (385)
Q Consensus 189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~ 268 (385)
...++..|+--|.||+.+...-.......-+..||+.|.. ++.++.......|..+. .-.+||..+.+.|+++.|+.
T Consensus 276 QeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKaLdr--~n~~Ll~lv~~FLkKLS-If~eNK~~M~~~~iveKL~k 352 (791)
T KOG1222|consen 276 QEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKALDR--SNSSLLTLVIKFLKKLS-IFDENKIVMEQNGIVEKLLK 352 (791)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHHHcc--cchHHHHHHHHHHHHhh-hhccchHHHHhccHHHHHHH
Confidence 4567777888888888764322455667778889999975 46788888888888876 45679999999999999999
Q ss_pred HHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHH
Q 016639 269 ILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICK 348 (385)
Q Consensus 269 lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~ 348 (385)
+.....++.++.....|.||++|...|- .++..|.+|.|+.+|.+..... -+...|..++.++....
T Consensus 353 lfp~~h~dL~~~tl~LlfNlSFD~glr~----------KMv~~GllP~l~~ll~~d~~~~---iA~~~lYh~S~dD~~K~ 419 (791)
T KOG1222|consen 353 LFPIQHPDLRKATLMLLFNLSFDSGLRP----------KMVNGGLLPHLASLLDSDTKHG---IALNMLYHLSCDDDAKA 419 (791)
T ss_pred hcCCCCHHHHHHHHHHhhhccccccccH----------HHhhccchHHHHHHhCCcccch---hhhhhhhhhccCcHHHH
Confidence 9999888899999999999999988775 4788899999999997743222 35567888899999999
Q ss_pred HHHHcCcHHHHHHHHHhcCCcC
Q 016639 349 SVAENGGIDALLRCIDDSGLQG 370 (385)
Q Consensus 349 ~I~e~GGl~~Lv~ll~~~~~~~ 370 (385)
.+.-...|+.++..+-.+.+..
T Consensus 420 MfayTdci~~lmk~v~~~~~~~ 441 (791)
T KOG1222|consen 420 MFAYTDCIKLLMKDVLSGTGSE 441 (791)
T ss_pred HHHHHHHHHHHHHHHHhcCCce
Confidence 9999999999988877665554
No 46
>PF05536 Neurochondrin: Neurochondrin
Probab=97.22 E-value=0.0089 Score=63.21 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=109.4
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc----chhHhhCCCcHHHHHHHhcCC-----CCHHHHHHHHHHHH
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS----TETFRTGGGPKLLVNILIDGN-----EDPEILNSGFAVVA 244 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~----~~~i~~~ggi~~Lv~lL~~~~-----~~~~v~~~a~~~L~ 244 (385)
.+...+.+|+.. .|. -.-.+|--++.++.+.+. +..|.++=|.+++-++|+.+. +...-...|..+|.
T Consensus 6 ~l~~c~~lL~~~--~D~-~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 6 SLEKCLSLLKSA--DDT-ERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHHhccC--CcH-HHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 356677788775 233 333467788888877653 235789999999999999854 23445778888888
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhc
Q 016639 245 ASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHA 323 (385)
Q Consensus 245 ~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~ 323 (385)
..|+ .++....--=.+-||.|++++.+.+. .++.+++.+|..++... +-++.+.+.|+++.|++.+..
T Consensus 83 ~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~----------~G~~aLl~~g~v~~L~ei~~~ 151 (543)
T PF05536_consen 83 AFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSP----------EGAKALLESGAVPALCEIIPN 151 (543)
T ss_pred HHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCc----------HhHHHHHhcCCHHHHHHHHHh
Confidence 8776 44443211113689999999999887 89999999999998543 335679999999999999988
Q ss_pred CCCHHHHHHHHHHHHHhhcC
Q 016639 324 GLSSPSLISASIALKAVAVN 343 (385)
Q Consensus 324 ~~~~~v~~~a~~aL~~La~~ 343 (385)
+. ...+.++.+|.++..+
T Consensus 152 ~~--~~~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 152 QS--FQMEIALNLLLNLLSR 169 (543)
T ss_pred Cc--chHHHHHHHHHHHHHh
Confidence 43 2345666666665443
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.15 E-value=0.049 Score=61.08 Aligned_cols=170 Identities=16% Similarity=0.088 Sum_probs=94.5
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (385)
..+.|+.+|+. .|..+...|+++|+.+- ..+.|..+|.+ ++..|...++.+|..+.. +
T Consensus 715 ~~~~l~~~L~D---~d~~VR~~Av~aL~~~~-------------~~~~l~~~l~D--~~~~VR~~aa~aL~~~~~--~-- 772 (897)
T PRK13800 715 DAALFAAALGD---PDHRVRIEAVRALVSVD-------------DVESVAGAATD--ENREVRIAVAKGLATLGA--G-- 772 (897)
T ss_pred CHHHHHHHhcC---CCHHHHHHHHHHHhccc-------------CcHHHHHHhcC--CCHHHHHHHHHHHHHhcc--c--
Confidence 34566677765 57788888888887641 11334455543 456666666666665432 1
Q ss_pred HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCcc--ch--hhhhchh-----HHHHHHh---cCcHHHHHHHH
Q 016639 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD--QV--VASQVYG-----YARRFAK---IGIARALVHSL 321 (385)
Q Consensus 254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~--rv--~~g~a~~-----~a~~I~e---~Ggi~~Lv~lL 321 (385)
+...++.|..+++..+..|+..|+.+|..+...... .+ ....... =+..+.+ ...+++|+.+|
T Consensus 773 -----~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L~~~L 847 (897)
T PRK13800 773 -----GAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPALVEAL 847 (897)
T ss_pred -----cchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHHHHHh
Confidence 112355666666655555555566666555322111 00 0000000 1111222 23568899999
Q ss_pred hcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 322 HAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 322 ~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+.. +..|...+..+|..+...+. ..+.|..++.+ .+..|.+.+..+|+.
T Consensus 848 ~D~-~~~VR~~A~~aL~~~~~~~~---------a~~~L~~al~D----~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 848 TDP-HLDVRKAAVLALTRWPGDPA---------ARDALTTALTD----SDADVRAYARRALAH 896 (897)
T ss_pred cCC-CHHHHHHHHHHHhccCCCHH---------HHHHHHHHHhC----CCHHHHHHHHHHHhh
Confidence 774 77899999999988733222 24445566654 445888888888863
No 48
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.05 E-value=0.0042 Score=53.56 Aligned_cols=132 Identities=12% Similarity=0.136 Sum_probs=102.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~ 221 (385)
+.+.....+..|.+-.- +|-|+....+.+++...|..|.. .++.+.+.++..|.|+|-+.....-|.+++|+|.
T Consensus 30 ~~eakeqv~ANLANFAY---DP~Nys~Lrql~vLdlFvdsl~e---~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~pl 103 (173)
T KOG4646|consen 30 NIEAKEQVTANLANFAY---DPINYSHLRQLDVLDLFVDSLEE---QNELLVEFGIGGLCNLCLDKTNAKFIREALGLPL 103 (173)
T ss_pred cHHHHHHHHHHHHhhcc---CcchHHHHHHhhHHHHHHHHhhc---ccHHHHHHhHHHHHhhccChHHHHHHHHhcCCce
Confidence 66777777777777765 79999999999999999999987 4888999999999999987655678899999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
++..|+++ ...++-.++-++..++-++-.-|..+ .-|+++.++.... ..+..-+|||+
T Consensus 104 ii~~lssp--~e~tv~sa~~~l~~l~~~~Rt~r~el----l~p~Vv~~v~r~~----~s~s~~~rnLa 161 (173)
T KOG4646|consen 104 IIFVLSSP--PEITVHSAALFLQLLEFGERTERDEL----LSPAVVRTVQRWR----ESKSHDERNLA 161 (173)
T ss_pred EEeecCCC--hHHHHHHHHHHHHHhcCcccchhHHh----ccHHHHHHHHHHH----HHhhHHHHHHH
Confidence 99999864 45667788888888887766556555 4567777775443 22334456664
No 49
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.97 E-value=0.016 Score=59.82 Aligned_cols=178 Identities=14% Similarity=0.112 Sum_probs=113.3
Q ss_pred HHHHHHHhcCCccchhHhhCCCcHHHHHHH--------hcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639 197 LKTMALLVHDVQSTETFRTGGGPKLLVNIL--------IDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (385)
Q Consensus 197 l~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL--------~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~ 268 (385)
|.+|--+..+......+....|+..|.++= .....+.++...|+++|+|+...++.-|+.+++.|+.+.++.
T Consensus 2 L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~ 81 (446)
T PF10165_consen 2 LETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCE 81 (446)
T ss_pred HHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHH
Confidence 334444444433334455555555555543 123457889999999999999999999999999999999999
Q ss_pred HHccC-----ChHHHHHHHHHHHHhcC-CCccchhhhhchhHHHHHH-hcCcHHHHHHHHhcCC----------------
Q 016639 269 ILSRQ-----RNDSIQSLYDAIRVLLT-PDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL---------------- 325 (385)
Q Consensus 269 lL~~~-----~~~v~k~A~~aL~~Lt~-~Dd~rv~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~---------------- 325 (385)
.|+.+ ..++.--.++.|+-+|. ..+.| ..++ +.+|+..|+..|..+.
T Consensus 82 ~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~----------~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~ 151 (446)
T PF10165_consen 82 RLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDR----------KKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPM 151 (446)
T ss_pred HHHcccccCCChhHHHHHHHHHHHHhcCChhHH----------HHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcc
Confidence 99997 34566667777777763 23333 2455 5688888888776642
Q ss_pred CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhc---C--CcCcHHHHHHHHHHHhc
Q 016639 326 SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS---G--LQGNKTVARICCSLLSK 384 (385)
Q Consensus 326 ~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~---~--~~~~~~v~k~a~~~Lr~ 384 (385)
+...+.+++.++.|+.........=.+.+.++.|+.+++.. . .........++..+|-|
T Consensus 152 ~~~~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~n 215 (446)
T PF10165_consen 152 DEEALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLN 215 (446)
T ss_pred hHHHHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhC
Confidence 11345678888888866432222123456777777777765 1 22223444555555544
No 50
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.94 E-value=0.0022 Score=42.63 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=34.6
Q ss_pred hhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHh
Q 016639 163 SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLV 204 (385)
Q Consensus 163 ~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~ 204 (385)
++++..+.+.|++|.|+.+|++ ++.+++..|+++|.+|+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~---~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKS---EDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHHHHc
Confidence 3478889999999999999985 58899999999999986
No 51
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=96.88 E-value=0.0044 Score=50.87 Aligned_cols=67 Identities=18% Similarity=0.190 Sum_probs=56.3
Q ss_pred HHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 016639 194 DSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMEL 260 (385)
Q Consensus 194 ~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~ 260 (385)
...++.|++|+..+.. +..+.+.|||+.++..-.-...++-+...|.++|+++|.+|++|++.|.+.
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3457899999987655 467789999999999877666788999999999999999999998877643
No 52
>PF05536 Neurochondrin: Neurochondrin
Probab=96.82 E-value=0.039 Score=58.39 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=97.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh---HHHHHhCCChHHHHHHHccCCh-------HHHHHHHHHHHHhc
Q 016639 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVV---KESYMELKIDELILEILSRQRN-------DSIQSLYDAIRVLL 289 (385)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n---r~~iv~~G~i~~Lv~lL~~~~~-------~v~k~A~~aL~~Lt 289 (385)
+..+.+|+... .+-.=.|+..+..++...+.+ ++.|.++=|.+=|-.+|+++.. ..+.=|...|..++
T Consensus 8 ~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 8 EKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 34455555433 222335667777777665533 3457788778889999988432 33334888888888
Q ss_pred CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhc
Q 016639 290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS 366 (385)
Q Consensus 290 ~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~ 366 (385)
.+++.... - .++ +-||.|++++....+..+..+++..|..++..++-.+.+.+.|+++.|.+++.++
T Consensus 86 ~~~~~a~~-------~-~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~ 152 (543)
T PF05536_consen 86 RDPELASS-------P-QMV--SRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ 152 (543)
T ss_pred CChhhhcC-------H-HHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC
Confidence 86664321 1 233 3499999999997554788999999999999999999999999999999999883
No 53
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.80 E-value=0.22 Score=55.98 Aligned_cols=165 Identities=14% Similarity=0.089 Sum_probs=96.1
Q ss_pred HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 016639 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (385)
Q Consensus 175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr 254 (385)
.+.|..+|.+ .++.+...|+.+|..+-.++ ...++..|++ ++..+...++++|..+
T Consensus 686 ~~~L~~~L~~---~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D--~d~~VR~~Av~aL~~~-------- 741 (897)
T PRK13800 686 APALRDHLGS---PDPVVRAAALDVLRALRAGD-----------AALFAAALGD--PDHRVRIEAVRALVSV-------- 741 (897)
T ss_pred hHHHHHHhcC---CCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcC--CCHHHHHHHHHHHhcc--------
Confidence 3577788876 58899999999998764322 2456777775 5788988888888753
Q ss_pred HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchh-hhhc----h-----hHHHHHHhcCc----HHHHHHH
Q 016639 255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV-ASQV----Y-----GYARRFAKIGI----ARALVHS 320 (385)
Q Consensus 255 ~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~-~g~a----~-----~~a~~I~e~Gg----i~~Lv~l 320 (385)
+..+.|..+|...+..|+..++.+|..+...+..-.+ .... . .=+..+.+.|. +..|+.+
T Consensus 742 ------~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~a 815 (897)
T PRK13800 742 ------DDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPPDDVAAATAA 815 (897)
T ss_pred ------cCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 1234567788887778888888888777432210000 0000 0 00112222221 2344555
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 321 LHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 321 L~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
|+.. +..|...+..+|..+... -.++.|+.++.+ ++..|-+.+..+|..
T Consensus 816 L~d~-d~~VR~~Aa~aL~~l~~~----------~a~~~L~~~L~D----~~~~VR~~A~~aL~~ 864 (897)
T PRK13800 816 LRAS-AWQVRQGAARALAGAAAD----------VAVPALVEALTD----PHLDVRKAAVLALTR 864 (897)
T ss_pred hcCC-ChHHHHHHHHHHHhcccc----------chHHHHHHHhcC----CCHHHHHHHHHHHhc
Confidence 5442 444555566666554321 234667777754 344777777777754
No 54
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.77 E-value=0.0077 Score=51.97 Aligned_cols=113 Identities=12% Similarity=0.047 Sum_probs=90.7
Q ss_pred CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (385)
Q Consensus 173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (385)
+-+..||.-.+.. .+.+.....+..|+|..-|+-+-.-+.+.+.+++.+..|.. .+..++..+...|+|+|. +..
T Consensus 16 ~Ylq~LV~efq~t--t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e--~ne~LvefgIgglCNlC~-d~~ 90 (173)
T KOG4646|consen 16 EYLQHLVDEFQTT--TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEE--QNELLVEFGIGGLCNLCL-DKT 90 (173)
T ss_pred HHHHHHHHHHHHh--ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhc--ccHHHHHHhHHHHHhhcc-ChH
Confidence 3456677777665 35666666667777776654333567789999999999985 578889999999999996 678
Q ss_pred hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcC
Q 016639 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT 290 (385)
Q Consensus 253 nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~ 290 (385)
|+.-|.+++++|.++.+|.++...++..|+.++.-|..
T Consensus 91 n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~ 128 (173)
T KOG4646|consen 91 NAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEF 128 (173)
T ss_pred HHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999988888889988888874
No 55
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.27 Score=50.05 Aligned_cols=244 Identities=16% Similarity=0.137 Sum_probs=144.0
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCC---C-ChhhHH---HHHHcCcHHHHHHHHhcccCCcHh---
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN---E-GSVNAA---VATKNGGVELVCSICYKMRCGSKR--- 191 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~---~-~~~~r~---~~~~~Gaip~Lv~lL~~~~~~d~~--- 191 (385)
.++++|...+.-. +.+.....+.-|+++...- + .+..+. ..++.+.++.||+-+.......++
T Consensus 125 n~V~slL~LLgHe-------NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~ 197 (536)
T KOG2734|consen 125 NAVQSLLELLGHE-------NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEAD 197 (536)
T ss_pred ccHHHHHHHhcCC-------CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhh
Confidence 4677777777643 5566666666666665531 1 222233 347778899999988765322221
Q ss_pred HHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHH
Q 016639 192 VLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL 270 (385)
Q Consensus 192 vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL 270 (385)
-...++..+-|++.-.+. +..+++.|-+.-|+.=+.....-......+.-+++-+...+.+|+..+-...|+..++.-|
T Consensus 198 gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~l 277 (536)
T KOG2734|consen 198 GVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQL 277 (536)
T ss_pred hhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhc
Confidence 233445555555533222 3444555555555553443322223333444444444455556888888999999998877
Q ss_pred cc---CCh------HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 271 SR---QRN------DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 271 ~~---~~~------~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
.- +++ +...+...+|+++...-.+| ..++...|+....-.|+. .+-.+..+..+|-...
T Consensus 278 a~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr----------~~Fl~~EGlqLm~Lmlr~--Kk~sr~SalkvLd~am 345 (536)
T KOG2734|consen 278 AVYKRHDPATVDEEEMMENLFDCLCSLLMAPANR----------ERFLKGEGLQLMNLMLRE--KKVSRGSALKVLDHAM 345 (536)
T ss_pred chhhccCCCCcCHHHHHHHHHHHHHHHhcChhhh----------hhhhccccHHHHHHHHHH--HHHhhhhHHHHHHHHH
Confidence 33 332 56677888888886544443 468877788655555555 2223456666776665
Q ss_pred cCh---HHHHHHHHcCcHHHHHHHHHhcCC------cCcHHHHHHHHHHHhc
Q 016639 342 VND---EICKSVAENGGIDALLRCIDDSGL------QGNKTVARICCSLLSK 384 (385)
Q Consensus 342 ~~~---e~c~~I~e~GGl~~Lv~ll~~~~~------~~~~~v~k~a~~~Lr~ 384 (385)
.++ ++|..+++.+|+..+..+-...+. -.-++.-++.|++|..
T Consensus 346 ~g~~gt~~C~kfVe~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaS 397 (536)
T KOG2734|consen 346 FGPEGTPNCNKFVEILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILAS 397 (536)
T ss_pred hCCCchHHHHHHHHHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHH
Confidence 553 799999999999999876432111 0013566777776653
No 56
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=96.63 E-value=0.04 Score=56.93 Aligned_cols=141 Identities=12% Similarity=0.066 Sum_probs=104.4
Q ss_pred HHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHh-------cccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHH
Q 016639 150 FDKLIELCGGNEGSVNAAVATKNGGVELVCSICY-------KMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKL 221 (385)
Q Consensus 150 l~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~-------~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~ 221 (385)
|..|+.+.+ ++.+..-+....++..|+.+-. .....+..+...|+++|+|++-..+. ++.+++.|+.+.
T Consensus 2 L~~LRiLsR---d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~ 78 (446)
T PF10165_consen 2 LETLRILSR---DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEK 78 (446)
T ss_pred HHHHHHHcc---CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHH
Confidence 667777777 4666666666666777777650 11124678999999999999987665 578889999999
Q ss_pred HHHHHhcCCC---CHHHHHHHHHHHHHHhcCChhhHHHHHh-CCChHHHHHHHccCCh-----------------HHHHH
Q 016639 222 LVNILIDGNE---DPEILNSGFAVVAASATGNEVVKESYME-LKIDELILEILSRQRN-----------------DSIQS 280 (385)
Q Consensus 222 Lv~lL~~~~~---~~~v~~~a~~~L~~~~~~~e~nr~~iv~-~G~i~~Lv~lL~~~~~-----------------~v~k~ 280 (385)
+++.|+.+.+ +.++.-..++.+--+++.....+..+++ .+++..|+..|..+-. .+.-+
T Consensus 79 l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E 158 (446)
T PF10165_consen 79 LCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE 158 (446)
T ss_pred HHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence 9999998633 5677777888888888888888877775 5899988887755311 45667
Q ss_pred HHHHHHHhcCCCc
Q 016639 281 LYDAIRVLLTPDD 293 (385)
Q Consensus 281 A~~aL~~Lt~~Dd 293 (385)
+..+++|++..-.
T Consensus 159 iLKllFNit~~~~ 171 (446)
T PF10165_consen 159 ILKLLFNITLHYP 171 (446)
T ss_pred HHHHHHHhhhccC
Confidence 8899999985444
No 57
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.36 E-value=0.19 Score=52.32 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=51.4
Q ss_pred ChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 262 ~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
.++.+..+|++.+..|+-+++.++..+...+. .-..++++|+.+|.+ +++.++--++..|..++
T Consensus 232 ~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~---------------~~~~~~~~L~~lL~s-~~~nvr~~~L~~L~~l~ 295 (526)
T PF01602_consen 232 IIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE---------------LLQKAINPLIKLLSS-SDPNVRYIALDSLSQLA 295 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH---------------HHHHHHHHHHHHHTS-SSHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhcchH---------------HHHhhHHHHHHHhhc-ccchhehhHHHHHHHhh
Confidence 44455555554444555555555555543211 123457788888874 36667667777777776
Q ss_pred cChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 342 ~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
..+ ...+. .....+..+.. +.+..+-+.++.+|.+
T Consensus 296 ~~~---~~~v~--~~~~~~~~l~~---~~d~~Ir~~~l~lL~~ 330 (526)
T PF01602_consen 296 QSN---PPAVF--NQSLILFFLLY---DDDPSIRKKALDLLYK 330 (526)
T ss_dssp CHC---HHHHG--THHHHHHHHHC---SSSHHHHHHHHHHHHH
T ss_pred ccc---chhhh--hhhhhhheecC---CCChhHHHHHHHHHhh
Confidence 654 11111 33333445542 2223566666665543
No 58
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.33 E-value=0.31 Score=49.24 Aligned_cols=197 Identities=13% Similarity=0.038 Sum_probs=133.2
Q ss_pred HHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcC
Q 016639 150 FDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG 229 (385)
Q Consensus 150 l~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~ 229 (385)
+..|..+.+. +|.-+....-.--.+.+...+-+ ++..+.+.+++.+..++.+.+.-+.+.+.+.--+++.-|...
T Consensus 4 ~N~Lv~l~~~--~p~l~~~~~~~~~~~~i~~~lL~---~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~ 78 (371)
T PF14664_consen 4 ANDLVDLLKR--HPTLKYDLVLSFFGERIQCMLLS---DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRD 78 (371)
T ss_pred HHHHHHHHHh--CchhhhhhhHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhccc
Confidence 3445555554 56544444333344444443333 358899999999999999876667778888888888888765
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH
Q 016639 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (385)
Q Consensus 230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~ 309 (385)
.+...=...|++.++.....+.. . .-+--|++..|+.+..+.++....-+..+|+-|+.-|. ..++
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~-~-~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P------------~lv~ 144 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKG-P-KEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP------------ELVA 144 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCC-c-ccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH------------HHHH
Confidence 44433355788888887654221 1 12345788899999988777777778899999986543 2355
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhc
Q 016639 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDS 366 (385)
Q Consensus 310 e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~ 366 (385)
++||+.+|++.+-.+. -.+.+.++.++-.+.-.+..++-+..---++.++.-.-+.
T Consensus 145 ~~gG~~~L~~~l~d~~-~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~ 200 (371)
T PF14664_consen 145 ECGGIRVLLRALIDGS-FSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDF 200 (371)
T ss_pred HcCCHHHHHHHHHhcc-HhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhh
Confidence 8999999999998753 2366677888877776666666555434566666555544
No 59
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.35 Score=53.92 Aligned_cols=139 Identities=15% Similarity=0.119 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHH----cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCC
Q 016639 143 LNEMMGLFDKLIELCGGNEGSVNAAVATK----NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGG 218 (385)
Q Consensus 143 ~~~~~~al~~L~~lc~~~~~~~~r~~~~~----~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~gg 218 (385)
.+.+.-+|.+|+++.+. +|+-...+.. -|-.+.+..+++.. .+++++.-||+.+.-++...++-.++++.+.
T Consensus 1739 ~~~v~m~LtAL~Nli~~--nPdlasvfgSe~~lig~F~l~~~~lr~~--~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~v 1814 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSA--NPDLASVFGSEILLIGNFPLLITYLRCR--KHPKLQILALQVILLATANKECVTDLATCNV 1814 (2235)
T ss_pred HHHHHHHHHHHHHHHhh--CcchhhhccchhhhhcccHHHHHHHHHc--CCchHHHHHHHHHHHHhcccHHHHHHHhhhH
Confidence 45788899999999997 7753333322 37788888888876 5777888889999887777665588899999
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHH-HHHHHHHHhc
Q 016639 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ-SLYDAIRVLL 289 (385)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k-~A~~aL~~Lt 289 (385)
+-.|+.+|.+ .+.....++.+|..+++. .+....-++.|++.-|..++-..+..-++ .++..+..|+
T Consensus 1815 L~~LL~lLHS---~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~ 1882 (2235)
T KOG1789|consen 1815 LTTLLTLLHS---QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQ 1882 (2235)
T ss_pred HHHHHHHHhc---ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhh
Confidence 9999999986 456667778888887654 45555666788888888777665443344 3566666664
No 60
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=96.23 E-value=0.47 Score=48.02 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHhc-CCCChhhHH-HHHHcCcH-HHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc-hhHhhCCCcH
Q 016639 145 EMMGLFDKLIELCG-GNEGSVNAA-VATKNGGV-ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPK 220 (385)
Q Consensus 145 ~~~~al~~L~~lc~-~~~~~~~r~-~~~~~Gai-p~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~-~~i~~~ggi~ 220 (385)
-++..|+.+..... . .+...+. -+.+.+.+ ..|...++....=...+...|+..++.+++..+.. ..+.++|-++
T Consensus 76 llK~lLk~l~~~~~~~-~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~ 154 (379)
T PF06025_consen 76 LLKSLLKFLSHAMQHS-GGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLID 154 (379)
T ss_pred HHHHHHHHHHHHhccC-CCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChH
Confidence 34444555555555 2 0222222 23343443 34444555432113578899999999998876655 6777889999
Q ss_pred HHHHHHh-c-CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHcc
Q 016639 221 LLVNILI-D-GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR 272 (385)
Q Consensus 221 ~Lv~lL~-~-~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~ 272 (385)
.+++.+. . -....+++..--.++..+|. |+.-.+.+.+.+.++.+++++.+
T Consensus 155 ~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 155 AFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred HHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCC
Confidence 9999887 3 34678888888888998886 67788889999999888866644
No 61
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.19 Score=56.16 Aligned_cols=174 Identities=10% Similarity=0.071 Sum_probs=116.0
Q ss_pred HHHHHHH----HhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhC---CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 016639 175 VELVCSI----CYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG---GGPKLLVNILIDGNEDPEILNSGFAVVAASA 247 (385)
Q Consensus 175 ip~Lv~l----L~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~---ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~ 247 (385)
.|+++.. |.+ .+..-.-.+|.+|+.+..|- .+.+.. .-++.++..|.+ +++.|+-+||.++...+
T Consensus 346 ~p~~~~~l~~~l~S---~~w~~R~AaL~Als~i~EGc---~~~m~~~l~~Il~~Vl~~l~D--phprVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQS---TEWKERHAALLALSVIAEGC---SDVMIGNLPKILPIVLNGLND--PHPRVRYAALNAIGQMS 417 (1075)
T ss_pred hHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHccc---HHHHHHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHhhh
Confidence 4555544 444 47788888999999998885 455543 234555556654 46889999999999988
Q ss_pred cCChhhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh---cCcHHHHHHHHhc
Q 016639 248 TGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK---IGIARALVHSLHA 323 (385)
Q Consensus 248 ~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e---~Ggi~~Lv~lL~~ 323 (385)
+.--.-.+.-...-+++.|+..|.+... .|+..|+.++-|++.+-+. -+.+ .+.+.+++..|..
T Consensus 418 tdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~------------~~l~pYLd~lm~~~l~~L~~ 485 (1075)
T KOG2171|consen 418 TDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDK------------SILEPYLDGLMEKKLLLLLQ 485 (1075)
T ss_pred hhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcH------------HHHHHHHHHHHHHHHHHHhc
Confidence 7665566666777899999999988644 8888899999998753331 1221 2445545556655
Q ss_pred CCCHHHHHHHHHHHHHhhcCh--HHHHHHHHcCcHHHHHHHHHhcCCcC
Q 016639 324 GLSSPSLISASIALKAVAVND--EICKSVAENGGIDALLRCIDDSGLQG 370 (385)
Q Consensus 324 ~~~~~v~~~a~~aL~~La~~~--e~c~~I~e~GGl~~Lv~ll~~~~~~~ 370 (385)
...+.+++.+..+++..|..- .|..-+. --++.|...|.+..+..
T Consensus 486 ~~~~~v~e~vvtaIasvA~AA~~~F~pY~d--~~Mp~L~~~L~n~~~~d 532 (1075)
T KOG2171|consen 486 SSKPYVQEQAVTAIASVADAAQEKFIPYFD--RLMPLLKNFLQNADDKD 532 (1075)
T ss_pred CCchhHHHHHHHHHHHHHHHHhhhhHhHHH--HHHHHHHHHHhCCCchh
Confidence 446778889999998887532 2222221 13456667777655333
No 62
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=96.11 E-value=0.051 Score=51.93 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=76.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPK 220 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~ 220 (385)
....+..+|+.|+-+|-- +|..|..+.+..++..|+.+|... +.+.++..++.+|..++-+.+. ...|-+.+|+.
T Consensus 104 ~~~li~~aL~vLQGl~LL--Hp~Sr~lF~r~~~m~lll~LL~~~--~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~ 179 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLL--HPPSRKLFHREQNMELLLDLLSPS--NPPAIQSACLDTLVCILLDSPENQRDFEELNGLS 179 (257)
T ss_pred hhHHHHHHHHHHHHHHHc--CchHHHHHhhhhhHHHHHHHhccC--CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHH
Confidence 334678899999999998 999999999999999999999553 4678999999999998877665 47888999999
Q ss_pred HHHHHHhcCCCCHHH
Q 016639 221 LLVNILIDGNEDPEI 235 (385)
Q Consensus 221 ~Lv~lL~~~~~~~~v 235 (385)
.++.++++...+.++
T Consensus 180 ~v~~llk~~~~~~~~ 194 (257)
T PF08045_consen 180 TVCSLLKSKSTDREL 194 (257)
T ss_pred HHHHHHccccccHHH
Confidence 999999986545444
No 63
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.08 E-value=0.02 Score=44.51 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=64.0
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhh
Q 016639 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVA 298 (385)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~ 298 (385)
|+.|++.|.. .++..+...++++|... +++ .+++.|+.+|++.+..++..|+++|..+-
T Consensus 1 i~~L~~~l~~-~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------- 59 (88)
T PF13646_consen 1 IPALLQLLQN-DPDPQVRAEAARALGEL--GDP---------EAIPALIELLKDEDPMVRRAAARALGRIG--------- 59 (88)
T ss_dssp HHHHHHHHHT-SSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred CHHHHHHHhc-CCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence 5788888854 36788999999998742 222 35899999998777788888999888652
Q ss_pred hhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016639 299 SQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK 338 (385)
Q Consensus 299 g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~ 338 (385)
...+++.|+++|....+..+...+..+|+
T Consensus 60 -----------~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -----------DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp -----------HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 23368899999988545556667776663
No 64
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.06 E-value=0.2 Score=44.51 Aligned_cols=122 Identities=11% Similarity=0.057 Sum_probs=95.9
Q ss_pred HHHHcCcHHHHHHHHhcccCC---cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q 016639 168 VATKNGGVELVCSICYKMRCG---SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVA 244 (385)
Q Consensus 168 ~~~~~Gaip~Lv~lL~~~~~~---d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~ 244 (385)
.+...||++.|++.....+.. ....+..+|.++..|....-..=+.++..=|..++..+.....+..++..++..|-
T Consensus 6 EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILE 85 (160)
T PF11841_consen 6 EFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILE 85 (160)
T ss_pred HHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHH
Confidence 456788999999999886421 24788889999998876543223455555577778888766668899999999999
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 245 ASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 245 ~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
++....+.--+.|.+.=-++.|+..|+..+.+++.+|.+.+-+|-
T Consensus 86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~ 130 (160)
T PF11841_consen 86 SIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALF 130 (160)
T ss_pred HHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 998877766777777778999999999988899999998888884
No 65
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.00 E-value=0.39 Score=49.86 Aligned_cols=261 Identities=15% Similarity=0.110 Sum_probs=154.4
Q ss_pred HhhHHhcCCChhHHHHHHHHH---HHHcCCCCCCCccC----CCCC---------------CCCCCchHHHHHHHHHHHh
Q 016639 74 KENMEDLGMEPTEALQDAIQT---LSLQGVDLSGIVKC----VPGE---------------SSLKDNPLIQSLERLKQLD 131 (385)
Q Consensus 74 ~eni~~f~m~~~eAl~~aI~q---fe~QGvdLsni~~~----~~~~---------------~~~~~~~v~~al~~L~~~l 131 (385)
++-.+.|. .-.+-.+++++. ...+|.|.+-.... .... .......+.-++..++..+
T Consensus 10 ~~~~~~~~-~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl 88 (526)
T PF01602_consen 10 AKILNSFK-IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDL 88 (526)
T ss_dssp HHHHHCSS-THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhh
Confidence 45556666 455566777777 37899998855222 1111 0001112335667777766
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccch
Q 016639 132 LNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTE 211 (385)
Q Consensus 132 ~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~ 211 (385)
.+. ++....-||+.|..++. ++-.. -.++.+..++.+ +++.+...|+-++..+.... +
T Consensus 89 ~~~-------n~~~~~lAL~~l~~i~~----~~~~~-----~l~~~v~~ll~~---~~~~VRk~A~~~l~~i~~~~---p 146 (526)
T PF01602_consen 89 NSP-------NPYIRGLALRTLSNIRT----PEMAE-----PLIPDVIKLLSD---PSPYVRKKAALALLKIYRKD---P 146 (526)
T ss_dssp CSS-------SHHHHHHHHHHHHHH-S----HHHHH-----HHHHHHHHHHHS---SSHHHHHHHHHHHHHHHHHC---H
T ss_pred cCC-------CHHHHHHHHhhhhhhcc----cchhh-----HHHHHHHHHhcC---CchHHHHHHHHHHHHHhccC---H
Confidence 554 66777788888888764 33211 147778888886 47889999999999987654 3
Q ss_pred hHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 016639 212 TFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP 291 (385)
Q Consensus 212 ~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~ 291 (385)
+.+...-++.+.++|.+ .++.++..|+.++..+ ..++..-..+ -...+..|..++...++-.+......|..++..
T Consensus 147 ~~~~~~~~~~l~~lL~d--~~~~V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~ 222 (526)
T PF01602_consen 147 DLVEDELIPKLKQLLSD--KDPSVVSAALSLLSEI-KCNDDSYKSL-IPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM 222 (526)
T ss_dssp CCHHGGHHHHHHHHTTH--SSHHHHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS
T ss_pred HHHHHHHHHHHhhhccC--CcchhHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhhhcccccchHHHHHHHHHHHhcccC
Confidence 33322258888899965 4688999999999887 2222211111 112334444444555655666677777777643
Q ss_pred CccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCc
Q 016639 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGN 371 (385)
Q Consensus 292 Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~ 371 (385)
+... . -+...++.+..+|++. ++.|+-+++.++..+...++ .-..+++.|..++.+ ++ .
T Consensus 223 ~~~~---------~---~~~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s-~~-~- 281 (526)
T PF01602_consen 223 EPED---------A---DKNRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSS-SD-P- 281 (526)
T ss_dssp SHHH---------H---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTS-SS-H-
T ss_pred Chhh---------h---hHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhc-cc-c-
Confidence 3311 1 0034678888888853 66788888888888877666 223456677788863 22 2
Q ss_pred HHHHHHHHHHHh
Q 016639 372 KTVARICCSLLS 383 (385)
Q Consensus 372 ~~v~k~a~~~Lr 383 (385)
.+.-.++..|.
T Consensus 282 -nvr~~~L~~L~ 292 (526)
T PF01602_consen 282 -NVRYIALDSLS 292 (526)
T ss_dssp -HHHHHHHHHHH
T ss_pred -hhehhHHHHHH
Confidence 34445555544
No 66
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.93 E-value=1.1 Score=45.78 Aligned_cols=206 Identities=11% Similarity=0.100 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCc---c-------chhHh
Q 016639 145 EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ---S-------TETFR 214 (385)
Q Consensus 145 ~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~---~-------~~~i~ 214 (385)
.+...++++..++.. |+-.-.+++.++++.|++||.+. +.++....+.-|--|++.+- + -.+++
T Consensus 100 dLhd~IQ~mhvlAt~---PdLYp~lveln~V~slL~LLgHe---NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLv 173 (536)
T KOG2734|consen 100 DLHDIIQEMHVLATM---PDLYPILVELNAVQSLLELLGHE---NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALV 173 (536)
T ss_pred cHHHHHHHHHhhhcC---hHHHHHHHHhccHHHHHHHhcCC---CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHH
Confidence 455678888888874 77676889999999999999873 55666655666666554211 1 12345
Q ss_pred hCCCcHHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC-ChHHHHH-HHHHHHHh
Q 016639 215 TGGGPKLLVNILIDGN----EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQS-LYDAIRVL 288 (385)
Q Consensus 215 ~~ggi~~Lv~lL~~~~----~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~-~~~v~k~-A~~aL~~L 288 (385)
+.+.++.|++-+..-. ++..-+..++.++-|+..-.+...+.+++.|.+..|+.-+... ..+.-+. |.-.|..+
T Consensus 174 dg~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLail 253 (536)
T KOG2734|consen 174 DGQVLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAIL 253 (536)
T ss_pred hccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHH
Confidence 6777888888775432 2333456778888888777777778888888888887755433 3344443 44444444
Q ss_pred cCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC--CH------HHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHH
Q 016639 289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL--SS------PSLISASIALKAVAVNDEICKSVAENGGIDALL 360 (385)
Q Consensus 289 t~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~--~~------~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv 360 (385)
.-+.+ ++++.+-...||..+++-+..+. +| ...++++--|..+.--.+++..+....|+....
T Consensus 254 lq~s~---------e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~ 324 (536)
T KOG2734|consen 254 LQNSD---------ENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMN 324 (536)
T ss_pred hccCc---------hhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHH
Confidence 33222 24445667889999988876654 32 456677777766666778999999999999875
Q ss_pred HHHHh
Q 016639 361 RCIDD 365 (385)
Q Consensus 361 ~ll~~ 365 (385)
-+|+.
T Consensus 325 Lmlr~ 329 (536)
T KOG2734|consen 325 LMLRE 329 (536)
T ss_pred HHHHH
Confidence 55553
No 67
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=95.79 E-value=1.8 Score=47.95 Aligned_cols=232 Identities=16% Similarity=0.142 Sum_probs=140.1
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC-Cc----HhHHHHHHHHHHHHhcCCcc---c--h
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC-GS----KRVLDSCLKTMALLVHDVQS---T--E 211 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~-~d----~~vl~~Al~aLa~L~~~~~~---~--~ 211 (385)
..+.+...+.-|+..|+ -+.||..+.+.|+++.|++.|..... +. ..+.+..+..+-.|+..... . .
T Consensus 135 ~~~ll~~llkLL~~c~K---v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~ 211 (802)
T PF13764_consen 135 GRELLQVLLKLLRYCCK---VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESK 211 (802)
T ss_pred cHHHHHHHHHHHHHHHh---hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 56777888888999998 49999999999999999998753221 12 34555555555555443211 0 1
Q ss_pred hHhhCCC--------cHHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC----hHH
Q 016639 212 TFRTGGG--------PKLLVNILIDG--NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR----NDS 277 (385)
Q Consensus 212 ~i~~~gg--------i~~Lv~lL~~~--~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~----~~v 277 (385)
......| +..+++.+.+. ..++.+....+++|-+++.|+++..+.+++. ..+.+. +...+ .+-
T Consensus 212 ~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~p~l~-f~~~D~~~~~~~ 288 (802)
T PF13764_consen 212 SSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FKPYLD-FDKFDEEHSPDE 288 (802)
T ss_pred ccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HHHhcC-hhhcccccCchH
Confidence 1122233 66666666543 2478899999999999999999887777652 122222 11111 111
Q ss_pred HHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-C------H--------HHHHHHHHHHHHhhc
Q 016639 278 IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-S------S--------PSLISASIALKAVAV 342 (385)
Q Consensus 278 ~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~------~--------~v~~~a~~aL~~La~ 342 (385)
+--..+++.++.+=.. -..|. .=...|.+.|++...++.|..+. . + ..+..++..|.-||.
T Consensus 289 -~~~Le~F~~i~~~I~~-~~~G~--~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~ 364 (802)
T PF13764_consen 289 -QFKLECFCEIAEGIPN-NSNGN--RLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLAR 364 (802)
T ss_pred -HHHHHHHHHHHhcCCC-CCchH--HHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHh
Confidence 1123344444421110 00111 11334668999999999997753 1 1 235678889999999
Q ss_pred ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 343 ~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
..+-++.+++.++|+.+-.+=+-.++..-=.++..++..|+
T Consensus 365 gh~~tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~ 405 (802)
T PF13764_consen 365 GHEPTQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALA 405 (802)
T ss_pred cCHHHHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHh
Confidence 88888888888999766544333222222345666655554
No 68
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.72 E-value=2.4 Score=43.05 Aligned_cols=208 Identities=7% Similarity=0.008 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHH------HcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhC
Q 016639 143 LNEMMGLFDKLIELCGGNEGSVNAAVAT------KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG 216 (385)
Q Consensus 143 ~~~~~~al~~L~~lc~~~~~~~~r~~~~------~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ 216 (385)
.+.+.-.|.-+.+.... ++..-.++. +.-..+..+.+|.. .+.-+.....+.++.+.... ...++.
T Consensus 80 dd~v~yvL~li~DmLs~--d~sr~~lf~~~a~~~k~~~~~~fl~ll~r---~d~~iv~~~~~Ils~la~~g---~~~~~~ 151 (442)
T KOG2759|consen 80 DDTVQYVLTLIDDMLSE--DRSRVDLFHDYAHKLKRTEWLSFLNLLNR---QDTFIVEMSFRILSKLACFG---NCKMEL 151 (442)
T ss_pred HHHHHHHHHHHHHHHhh--CchHHHHHHHHHHhhhccchHHHHHHHhc---CChHHHHHHHHHHHHHHHhc---cccccc
Confidence 34556666666666664 333222221 12336778888877 35555554667777665432 122333
Q ss_pred CCcHH----HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHH-ccC-ChHHHHHHHHHHHHhcC
Q 016639 217 GGPKL----LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEIL-SRQ-RNDSIQSLYDAIRVLLT 290 (385)
Q Consensus 217 ggi~~----Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL-~~~-~~~v~k~A~~aL~~Lt~ 290 (385)
+-... |-..|.+. .+..-...+.++|.-+. ..++.|-.++.+.|+..++.+| .++ +...+=..+-+++-||+
T Consensus 152 ~e~~~~~~~l~~~l~~~-~~~~~~~~~~rcLQ~ll-~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtF 229 (442)
T KOG2759|consen 152 SELDVYKGFLKEQLQSS-TNNDYIQFAARCLQTLL-RVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTF 229 (442)
T ss_pred hHHHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHh-cCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhc
Confidence 23333 33344442 34444556677888765 5677999999999999999999 443 33666678999999998
Q ss_pred CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-------HHHHHHHHcCcHHHHHHHH
Q 016639 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-------EICKSVAENGGIDALLRCI 363 (385)
Q Consensus 291 ~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-------e~c~~I~e~GGl~~Lv~ll 363 (385)
+... |..+..-+.|+.|.++++......|.+-++.++.|+.... +.+..++.++.++.+--+.
T Consensus 230 n~~~----------ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~ 299 (442)
T KOG2759|consen 230 NPHA----------AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLE 299 (442)
T ss_pred CHHH----------HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHH
Confidence 6442 2234456889999999988655568888999999998654 7788888877777775544
Q ss_pred HhcCCcC
Q 016639 364 DDSGLQG 370 (385)
Q Consensus 364 ~~~~~~~ 370 (385)
....+++
T Consensus 300 ~rkysDE 306 (442)
T KOG2759|consen 300 ERKYSDE 306 (442)
T ss_pred hcCCCcH
Confidence 4443433
No 69
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=95.66 E-value=0.12 Score=52.96 Aligned_cols=139 Identities=13% Similarity=0.177 Sum_probs=104.3
Q ss_pred chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC-hHHHHHHHHHHHHh
Q 016639 210 TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVL 288 (385)
Q Consensus 210 ~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~-~~v~k~A~~aL~~L 288 (385)
++.+...||++.|++++....-...+...+.++|..+.. -+|+..|+..| +..++.+-+... .+.++..+..|-+|
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 357888999999999998754455667788899988653 46899999877 555555444433 36777788888888
Q ss_pred cCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHHHHH
Q 016639 289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLR 361 (385)
Q Consensus 289 t~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~Lv~ 361 (385)
|-++.+-+..+++.|||..++---+. .++.++..+..+|.|++.. .+....|++.-.-+-|.-
T Consensus 250 ---------FKHSeet~~~Lvaa~~lD~vl~~~rR-t~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~ 314 (832)
T KOG3678|consen 250 ---------FKHSEETCQRLVAAGGLDAVLYWCRR-TDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFP 314 (832)
T ss_pred ---------hhhhHHHHHHHHhhcccchheeeccc-CCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhh
Confidence 45555777889999999998765555 3788999999999999876 366677887776666654
No 70
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.65 E-value=0.061 Score=41.72 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=60.8
Q ss_pred hHHHHHHH-ccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 263 DELILEIL-SRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 263 i~~Lv~lL-~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
|+.|++.| .+.+..++.+++++|..+- ....++.|++++++ .++.++..++.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--------------------~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--------------------DPEAIPALIELLKD-EDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--------------------HHHHHHHHHHHHTS-SSHHHHHHHHHHHHCCH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--------------------CHhHHHHHHHHHcC-CCHHHHHHHHHHHHHhC
Confidence 57899999 5555678888888888331 11348999999965 48889999999999884
Q ss_pred cChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHH
Q 016639 342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL 382 (385)
Q Consensus 342 ~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~L 382 (385)
.-..++.|.+++.+. .+..+-+.|...|
T Consensus 60 ----------~~~~~~~L~~~l~~~---~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 ----------DPEAIPALIKLLQDD---DDEVVREAAAEAL 87 (88)
T ss_dssp ----------HHHTHHHHHHHHTC----SSHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHcCC---CcHHHHHHHHhhc
Confidence 234788888888772 2334556666554
No 71
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=95.64 E-value=0.2 Score=52.14 Aligned_cols=189 Identities=12% Similarity=0.055 Sum_probs=121.6
Q ss_pred hHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHH
Q 016639 165 NAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVV 243 (385)
Q Consensus 165 ~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L 243 (385)
-|.-..++...++|+.+|+. ++..+--.++..+.+....-.+ +.-+++.+-|..++.++.+ .+..+++...|++
T Consensus 423 LRTgL~d~~I~elLi~~Ls~---Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s--KDdaLqans~wvl 497 (743)
T COG5369 423 LRTGLLDYPIVELLIDALSN---PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS--KDDALQANSEWVL 497 (743)
T ss_pred HHhhccccchHHHHHHHhcC---ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc--chhhhhhcchhhh
Confidence 34445666778899999976 2445555555666665443222 4677889999999999985 4778999999999
Q ss_pred HHHhcCChhh-HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhh----chhHHHHHHhcCcHHHHH
Q 016639 244 AASATGNEVV-KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQ----VYGYARRFAKIGIARALV 318 (385)
Q Consensus 244 ~~~~~~~e~n-r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~----a~~~a~~I~e~Ggi~~Lv 318 (385)
+++..++.++ +-.+.+.-++..+++........|+......|||+|.+..-... +. ...-.+++. +.|+
T Consensus 498 rHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEk-skdv~~K~~p~~ylf-----k~l~ 571 (743)
T COG5369 498 RHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEK-SKDVFIKATPRRYLF-----KRLI 571 (743)
T ss_pred hhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccc-cceeEEecChHHHHH-----HHHH
Confidence 9998877665 33566778899999988777668999999999999974321000 00 011122333 4677
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHc-CcHHHHHHHHHh
Q 016639 319 HSLHAGLSSPSLISASIALKAVAV-NDEICKSVAEN-GGIDALLRCIDD 365 (385)
Q Consensus 319 ~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~-GGl~~Lv~ll~~ 365 (385)
+-++.. ++-.....|-.|-++|. +++....|.+- .-++.+.+.|..
T Consensus 572 ~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e 619 (743)
T COG5369 572 DKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDE 619 (743)
T ss_pred HHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHH
Confidence 777774 44223344666666554 44555444432 345555555543
No 72
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.49 E-value=0.023 Score=40.68 Aligned_cols=54 Identities=9% Similarity=0.007 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHh
Q 016639 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVL 288 (385)
Q Consensus 234 ~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~L 288 (385)
.+...++++|.+++...... ..-....+++.|+.+|++.+..|+.+||++|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~-~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPEL-LQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHH-HHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 46778999999876554443 3334568999999999988889999999999865
No 73
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.32 E-value=0.067 Score=43.96 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHh
Q 016639 147 MGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR 214 (385)
Q Consensus 147 ~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~ 214 (385)
+..++.|..+|-. ++.+...+.+.||+|.+++.|.-- +.++-+.++|+.++-+|+.|++..+.++
T Consensus 4 ~~lvrlianl~~~--~~~~Qd~vr~~~Gi~liL~~c~iD-~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 4 RDLVRLIANLCYK--NKEVQDLVRELGGIPLILSCCNID-DHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred HHHHHHHHHHHhC--CHHHHHHHHHcCChHHHHHhcCCC-cccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3567788889987 999999999999999999998653 3578899999999999999987655553
No 74
>PTZ00429 beta-adaptin; Provisional
Probab=95.25 E-value=6.1 Score=43.60 Aligned_cols=55 Identities=7% Similarity=0.085 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
++-|.+.|+-++..+-..++ +.+.+.|.++.|.++|...+..|+.+|..+|..+.
T Consensus 153 ~pYVRKtAalai~Kly~~~p---elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 153 DPYVRKTAAMGLGKLFHDDM---QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred CHHHHHHHHHHHHHHHhhCc---ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 45555555555555433222 23344555666666655555456666666665554
No 75
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.21 E-value=1 Score=50.59 Aligned_cols=181 Identities=15% Similarity=0.092 Sum_probs=103.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHH-cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCc
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGP 219 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~-~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi 219 (385)
+..+-..+|.+|..+..+ .... +... -..++.++..|+. +++.|.-.||++++-++++=.. .+......-+
T Consensus 361 ~w~~R~AaL~Als~i~EG--c~~~--m~~~l~~Il~~Vl~~l~D---phprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAEG--CSDV--MIGNLPKILPIVLNGLND---PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred CHHHHHHHHHHHHHHHcc--cHHH--HHHHHHHHHHHHHhhcCC---CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 444556666677776554 2221 1111 1233444444544 6889999999999999886332 1333445667
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh---CCChHHHH-HHHccCChHHHHHHHHHHHHhcCCCccc
Q 016639 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME---LKIDELIL-EILSRQRNDSIQSLYDAIRVLLTPDDDQ 295 (385)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~---~G~i~~Lv-~lL~~~~~~v~k~A~~aL~~Lt~~Dd~r 295 (385)
+.|+..|.+ ..+..++..|+.++-+....+. ..++. -+.+.+++ .++.+++..++..+..+|.+.+..-..
T Consensus 434 ~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~---~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~- 508 (1075)
T KOG2171|consen 434 PALIALLDS-TQNVRVQAHAAAALVNFSEECD---KSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE- 508 (1075)
T ss_pred HHHHHHhcc-cCchHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh-
Confidence 788888876 5688999999998888654433 33332 23444222 344556667777788888888632111
Q ss_pred hhhhhchhHHHHHHhcCcHHHHHHHHhcCCCH---HHHHH--HHHHHHHhhcC
Q 016639 296 VVASQVYGYARRFAKIGIARALVHSLHAGLSS---PSLIS--ASIALKAVAVN 343 (385)
Q Consensus 296 v~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~---~v~~~--a~~aL~~La~~ 343 (385)
.| ..+. .-.+|.|...|....++ .++.. -|..+-..|++
T Consensus 509 -~F------~pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG 552 (1075)
T KOG2171|consen 509 -KF------IPYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG 552 (1075)
T ss_pred -hh------HhHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh
Confidence 10 1111 12467777777775422 22222 34455556665
No 76
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=95.02 E-value=1.2 Score=45.03 Aligned_cols=190 Identities=13% Similarity=0.134 Sum_probs=122.4
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHH--HHHHhcCCcc--chhHhhCCCcHHHHH
Q 016639 149 LFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKT--MALLVHDVQS--TETFRTGGGPKLLVN 224 (385)
Q Consensus 149 al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~a--La~L~~~~~~--~~~i~~~ggi~~Lv~ 224 (385)
++..|...... .+..-..+..+||+..++..++.. +- .++.- ...-..+.+. .....+.--|+.
T Consensus 4 av~~ld~~~~~--~~~a~~~f~~~~G~~~li~rl~~E------v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--- 71 (379)
T PF06025_consen 4 AVRFLDTFIDS--SPDAFAAFRNLNGLDILIDRLQYE------VD-FALEENKNEEAGSGIPPEYKESSVDGYSISY--- 71 (379)
T ss_pred HHHHHHHHHhc--cHHHHHHHHhCCCHHHHHHHHHHH------HH-HHHhcccccCCCCCCCCCcccccccccccCH---
Confidence 44555555554 566667778899999999999752 11 11110 0010111100 011111000111
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhc---CChhhHHHHHh-CCChHHHHHHHccCCh---HHHHHHHHHHHHhcCCCccchh
Q 016639 225 ILIDGNEDPEILNSGFAVVAASAT---GNEVVKESYME-LKIDELILEILSRQRN---DSIQSLYDAIRVLLTPDDDQVV 297 (385)
Q Consensus 225 lL~~~~~~~~v~~~a~~~L~~~~~---~~e~nr~~iv~-~G~i~~Lv~lL~~~~~---~v~k~A~~aL~~Lt~~Dd~rv~ 297 (385)
....+.+.-++.+..+.. ++...-..+++ .-.+..|..+|++... .+.-.|...+.....+|.-..+
T Consensus 72 ------~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~ 145 (379)
T PF06025_consen 72 ------QRQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS 145 (379)
T ss_pred ------HHHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence 122344455666666555 44555556777 5566777777777433 7888899999999888875544
Q ss_pred hhhchhHHHHHHhcCcHHHHHHHHh-cCC--CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHh
Q 016639 298 ASQVYGYARRFAKIGIARALVHSLH-AGL--SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD 365 (385)
Q Consensus 298 ~g~a~~~a~~I~e~Ggi~~Lv~lL~-~~~--~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~ 365 (385)
.|.+.|.++.+++.+. ... +.+++..+=.+|..+|.|+...+.+.+.+.++.+++++.+
T Consensus 146 ---------~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~~~l~~~f~if~s 207 (379)
T PF06025_consen 146 ---------ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSSNPLDKLFEIFTS 207 (379)
T ss_pred ---------HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhcChHHHHHHHhCC
Confidence 4679999999999999 433 5678888888999999999999999999999999887654
No 77
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.35 Score=53.91 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHH----hCCChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH
Q 016639 235 ILNSGFAVVAASATGNEVVKESYM----ELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (385)
Q Consensus 235 v~~~a~~~L~~~~~~~e~nr~~iv----~~G~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~ 309 (385)
-+.-++-+|+|+.+.+++-...|- =.|..+.+..+|+.++. .+++-|..++.-+|.+.+. + ..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C-v---------~~~a 1810 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKEC-V---------TDLA 1810 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH-H---------HHHH
Confidence 456778899999888885433222 13788999999998865 5777777777777765553 2 3589
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 310 e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+.|.+..|+.+|.+. +....-++.+|..|+.+.++..+-.+.||+.-|..++-..... ..-.++..++-+
T Consensus 1811 ~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~---QqRAqaAeLlaK 1880 (2235)
T KOG1789|consen 1811 TCNVLTTLLTLLHSQ--PSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSD---QQRAQAAELLAK 1880 (2235)
T ss_pred hhhHHHHHHHHHhcC--hHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcH---HHHHHHHHHHHH
Confidence 999999999999774 5567788999999999999999999999999998877654332 344555555544
No 78
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=94.90 E-value=2.9 Score=42.79 Aligned_cols=90 Identities=8% Similarity=-0.066 Sum_probs=63.6
Q ss_pred CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (385)
Q Consensus 173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (385)
++.+.|+.+|++ .++.+...++.+++... ....+.+..+|++ .+..+...++++|..+. .
T Consensus 117 ~a~~~L~~~L~~---~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d--~d~~Vra~A~raLG~l~--~-- 176 (410)
T TIGR02270 117 QAEPWLEPLLAA---SEPPGRAIGLAALGAHR-----------HDPGPALEAALTH--EDALVRAAALRALGELP--R-- 176 (410)
T ss_pred HHHHHHHHHhcC---CChHHHHHHHHHHHhhc-----------cChHHHHHHHhcC--CCHHHHHHHHHHHHhhc--c--
Confidence 357778888876 47777777776666421 1234678888873 67888899999987653 2
Q ss_pred hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 253 nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
...++.|..++.+.+..|...|.+++.-+-
T Consensus 177 -------~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 -------RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred -------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 246677888888888788888888886663
No 79
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.82 E-value=0.51 Score=45.15 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh
Q 016639 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK 310 (385)
Q Consensus 232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~-~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e 310 (385)
.......|+++|.-+|.-|+..|..+.+...+..|+.+|... ...++.++..+|..+..|. +.|.+.+-+
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~---------p~N~r~FE~ 174 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDS---------PENQRDFEE 174 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcC---------hHHHHHHHH
Confidence 344567788999999999999999999999999999999543 4467777777777776543 477888889
Q ss_pred cCcHHHHHHHHhcCC-CHHHHHHHHHHH
Q 016639 311 IGIARALVHSLHAGL-SSPSLISASIAL 337 (385)
Q Consensus 311 ~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL 337 (385)
.+|+..++.+++... +.++.-.+...|
T Consensus 175 ~~Gl~~v~~llk~~~~~~~~r~K~~EFL 202 (257)
T PF08045_consen 175 LNGLSTVCSLLKSKSTDRELRLKCIEFL 202 (257)
T ss_pred hCCHHHHHHHHccccccHHHhHHHHHHH
Confidence 999999999999865 555543433333
No 80
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.51 E-value=0.34 Score=51.58 Aligned_cols=154 Identities=12% Similarity=0.155 Sum_probs=105.7
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCC--------CcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG--------GPKLLVNILIDGNEDPEILNSGFAVVAA 245 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~g--------gi~~Lv~lL~~~~~~~~v~~~a~~~L~~ 245 (385)
++|.|+++|.+ .|....+.|+.+|.-++.+. ..+.+.. -+|.++++.++ +++++.+.|..++-.
T Consensus 129 lLp~L~~~L~s---~d~n~~EgA~~AL~KIcEDs---a~~lds~~~~rpl~~mipkfl~f~~h--~spkiRs~A~~cvNq 200 (885)
T KOG2023|consen 129 LLPQLCELLDS---PDYNTCEGAFGALQKICEDS---AQFLDSDVLTRPLNIMIPKFLQFFKH--PSPKIRSHAVGCVNQ 200 (885)
T ss_pred HHHHHHHHhcC---CcccccchhHHHHHHHHhhh---HHHHhhhcccCchHHhHHHHHHHHhC--CChhHHHHHHhhhhh
Confidence 47889999987 46678889999999998765 4555542 36777777775 478898888888765
Q ss_pred HhcCChhhHHHHHh--CCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH-h-cCcHHHHHHHH
Q 016639 246 SATGNEVVKESYME--LKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-K-IGIARALVHSL 321 (385)
Q Consensus 246 ~~~~~e~nr~~iv~--~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~-e-~Ggi~~Lv~lL 321 (385)
.... +-++++. -..++.|..+-...+++|+|+.|.++.-|.. .|.. .|+ . .++++.++..-
T Consensus 201 ~i~~---~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Lle---vr~d---------kl~phl~~IveyML~~t 265 (885)
T KOG2023|consen 201 FIII---QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLE---VRPD---------KLVPHLDNIVEYMLQRT 265 (885)
T ss_pred eeec---CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH---hcHH---------hcccchHHHHHHHHHHc
Confidence 4322 2244442 1344555555544456999999999999863 2322 344 2 35667776665
Q ss_pred hcCCCHHHHHHHHHHHHHhhcChHHHHHHHH
Q 016639 322 HAGLSSPSLISASIALKAVAVNDEICKSVAE 352 (385)
Q Consensus 322 ~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e 352 (385)
+.+ |.+|.-++|.....+|..+ +|..+..
T Consensus 266 qd~-dE~VALEACEFwla~aeqp-i~~~~L~ 294 (885)
T KOG2023|consen 266 QDV-DENVALEACEFWLALAEQP-ICKEVLQ 294 (885)
T ss_pred cCc-chhHHHHHHHHHHHHhcCc-CcHHHHH
Confidence 554 6778889999999999877 7766654
No 81
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.22 E-value=1.5 Score=48.47 Aligned_cols=251 Identities=15% Similarity=0.164 Sum_probs=141.0
Q ss_pred HHHHhhHHhcCCChhHHHHHHHHH-HHH--cCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHH
Q 016639 71 EVVKENMEDLGMEPTEALQDAIQT-LSL--QGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMM 147 (385)
Q Consensus 71 ~~v~eni~~f~m~~~eAl~~aI~q-fe~--QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~ 147 (385)
=+|..||-.++++..++ .++ |.. ||-.+ .|+-..+|-..+++.|.++.| ++.. -++.++++.-
T Consensus 42 LlV~~~IisldL~v~~V----y~~vW~~~~~~~pM-~v~YR~~Gl~geAtE~~v~~l-------~~~~--~~~~d~e~~~ 107 (802)
T PF13764_consen 42 LLVNNKIISLDLPVRDV----YEKVWKPNNQNPPM-RVVYRMRGLDGEATEEFVESL-------EDDS--EEEEDPEQEF 107 (802)
T ss_pred eeecCeeecCCCcHHHH----HHHHhcccCCCCCe-EEEEeecCCCCccchhhHhhc-------cCcc--ccccCHHHHH
Confidence 36778888888876554 444 432 44333 445555665555544553322 2210 0111222111
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC--CcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHH
Q 016639 148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNI 225 (385)
Q Consensus 148 ~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~--~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~l 225 (385)
.. -..+.+-||+..|+.++.+..+ .+..++...++-|...+.-..+++.+++.++++.|++.
T Consensus 108 ~~----------------~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~ 171 (802)
T PF13764_consen 108 KI----------------ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSV 171 (802)
T ss_pred HH----------------HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHH
Confidence 11 1123556889999999987542 23566666777777766555557899999999999999
Q ss_pred HhcCCC------CHHHHHHHHHHHHHHhcCChhhHHHHH------hCCC--------hHHHHHHHccCC----hHHHHHH
Q 016639 226 LIDGNE------DPEILNSGFAVVAASATGNEVVKESYM------ELKI--------DELILEILSRQR----NDSIQSL 281 (385)
Q Consensus 226 L~~~~~------~~~v~~~a~~~L~~~~~~~e~nr~~iv------~~G~--------i~~Lv~lL~~~~----~~v~k~A 281 (385)
|+.... ..++...-+.++..+.. |.+...+- ...+ +..+++.+.+.. ..+.+..
T Consensus 172 L~~~l~~~~~~~~~~i~E~LL~IiE~ll~--ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l 249 (802)
T PF13764_consen 172 LNRALQANQNSSQAEIAEQLLEIIESLLS--EANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQAL 249 (802)
T ss_pred HHHHHhCccccccchHHHHHHHHHHHHHH--HHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHH
Confidence 963211 25666666666665543 33333221 1222 667777776542 3778889
Q ss_pred HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-----CH-HHHHHHHHHHHHhhcC---hHHHHHHHH
Q 016639 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-----SS-PSLISASIALKAVAVN---DEICKSVAE 352 (385)
Q Consensus 282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-----~~-~v~~~a~~aL~~La~~---~e~c~~I~e 352 (385)
++.|-+||.+++.+.. .++++ .++.+++ ..+. +. -.+...|.+..++-.+ +..++.|.+
T Consensus 250 ~RiLP~Lt~G~~e~m~---------~Lv~~--F~p~l~f-~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~ 317 (802)
T PF13764_consen 250 ARILPFLTYGNEEKMD---------ALVEH--FKPYLDF-DKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE 317 (802)
T ss_pred HHHhhHHhcCCHHHHH---------HHHHH--HHHhcCh-hhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 9999999988875432 34432 2344332 2211 01 1233444444444222 466778888
Q ss_pred cCcHHHHHHHHHh
Q 016639 353 NGGIDALLRCIDD 365 (385)
Q Consensus 353 ~GGl~~Lv~ll~~ 365 (385)
.|.+...++.|..
T Consensus 318 ~GIv~~a~~YL~~ 330 (802)
T PF13764_consen 318 SGIVQDAIDYLLK 330 (802)
T ss_pred hhHHHHHHHHHHH
Confidence 8888876666554
No 82
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.20 E-value=3.1 Score=41.02 Aligned_cols=227 Identities=14% Similarity=0.044 Sum_probs=140.4
Q ss_pred HHHHHHHHHHhcCCCChhhHHHH-HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh-CCCcHHHHH
Q 016639 147 MGLFDKLIELCGGNEGSVNAAVA-TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPKLLVN 224 (385)
Q Consensus 147 ~~al~~L~~lc~~~~~~~~r~~~-~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~-~ggi~~Lv~ 224 (385)
-=++.++..+.- .+++|.++ +++-.-..++++++.+- ++..++-..|-.++-++-....-+++-. ..-+..|++
T Consensus 167 lfav~cl~~l~~---~~e~R~i~waentcs~r~~e~l~n~v-g~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~ 242 (432)
T COG5231 167 LFAVSCLSNLEF---DVEKRKIEWAENTCSRRFMEILQNYV-GVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIA 242 (432)
T ss_pred HHHHHHHhhhhh---hHHHHHHHHHHhhHHHHHHHHHHhhh-hhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 344566666655 58888866 56666678999998753 5677888888888877665332222211 234566777
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHHh--------cCCCc
Q 016639 225 ILIDGNEDPEILNSGFAVVAASATGNE-VVKESYMELKIDELILEILSR--QRNDSIQSLYDAIRVL--------LTPDD 293 (385)
Q Consensus 225 lL~~~~~~~~v~~~a~~~L~~~~~~~e-~nr~~iv~~G~i~~Lv~lL~~--~~~~v~k~A~~aL~~L--------t~~Dd 293 (385)
+.+.. ...+|.+.+|..+.++|.+.+ ..+....-.|-+.+-|++|.. .+++-...=..-|+.. +.-|.
T Consensus 243 iVk~~-~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 243 IVKER-AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 77652 356889999999999997442 223333345545566666643 3444444433334432 21111
Q ss_pred cchh-------hhh-------chhHHHHHHhc--CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHcCcH
Q 016639 294 DQVV-------ASQ-------VYGYARRFAKI--GIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGI 356 (385)
Q Consensus 294 ~rv~-------~g~-------a~~~a~~I~e~--Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~GGl 356 (385)
...+ -|- =++|+.++.+. ..++.|..+|++..+...+.-||.-+..+.. .+|...-+..-||=
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k 401 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVK 401 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhH
Confidence 1111 111 14889999865 4789999999996422244566776666653 47999999999999
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHH
Q 016639 357 DALLRCIDDSGLQGNKTVARICCSLL 382 (385)
Q Consensus 357 ~~Lv~ll~~~~~~~~~~v~k~a~~~L 382 (385)
..++++|.. +++ +|-=+|++++
T Consensus 402 ~~im~L~nh-~d~---~VkfeAl~a~ 423 (432)
T COG5231 402 EIIMNLINH-DDD---DVKFEALQAL 423 (432)
T ss_pred HHHHHHhcC-CCc---hhhHHHHHHH
Confidence 999999864 333 4555555544
No 83
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=93.66 E-value=2.4 Score=42.87 Aligned_cols=121 Identities=24% Similarity=0.300 Sum_probs=88.5
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh--HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH
Q 016639 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN--DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (385)
Q Consensus 232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~--~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~ 309 (385)
+.++...|.++++++.. ++...+.+.+.++--.++..|..... .....|...+|.+..-++.- .-.
T Consensus 38 ~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~-----------~~~ 105 (371)
T PF14664_consen 38 SKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP-----------KEI 105 (371)
T ss_pred cHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc-----------ccC
Confidence 48999999999999764 66778889999988888988977543 33345888888875321100 012
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcC
Q 016639 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG 367 (385)
Q Consensus 310 e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~ 367 (385)
-.|.+..++.+.... ++....-+..+|..+++.++ ..+.++||+..|++.+.+++
T Consensus 106 ~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~ 160 (371)
T PF14664_consen 106 PRGVVRALVAIAEHE-DDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGS 160 (371)
T ss_pred CHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhcc
Confidence 346788889888774 44566677778999988653 45678999999999998743
No 84
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=92.87 E-value=0.18 Score=35.93 Aligned_cols=54 Identities=15% Similarity=0.000 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639 276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (385)
Q Consensus 276 ~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~L 340 (385)
.++..|+++|.+++..-. +.... ....+++.|+.+|+.. ++.|...+|++|++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~---------~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCP---------ELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTH---------HHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccH---------HHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 467889999998764222 11122 2245789999999774 668999999999875
No 85
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=92.68 E-value=2.3 Score=37.76 Aligned_cols=117 Identities=9% Similarity=0.180 Sum_probs=81.9
Q ss_pred HHHHhCCChHHHHHHHccCCh------HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CH
Q 016639 255 ESYMELKIDELILEILSRQRN------DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SS 327 (385)
Q Consensus 255 ~~iv~~G~i~~Lv~lL~~~~~------~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~ 327 (385)
+.|+..||+..|+.++..+.. +....+..++..|---+-+-- ......-|..++....... +.
T Consensus 5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW----------d~l~~~FI~Kia~~Vn~~~~d~ 74 (160)
T PF11841_consen 5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW----------DTLSDSFIKKIASYVNSSAMDA 74 (160)
T ss_pred HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch----------hhccHHHHHHHHHHHccccccc
Confidence 578899999999999999873 445445555555531111000 1222334677777777655 77
Q ss_pred HHHHHHHHHHHHhhcChH-HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 328 PSLISASIALKAVAVNDE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 328 ~v~~~a~~aL~~La~~~e-~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
.++..++..|.++..+.. ....|.+.=-++.|+..|+. .|++++..+.++|-+|
T Consensus 75 ~i~q~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~----~~~~iq~naiaLinAL 129 (160)
T PF11841_consen 75 SILQRSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQV----SNQEIQTNAIALINAL 129 (160)
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHc----CCHHHHHHHHHHHHHH
Confidence 888999999999998865 47777777788889999987 3347999999888654
No 86
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=92.67 E-value=0.34 Score=50.48 Aligned_cols=139 Identities=8% Similarity=-0.001 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHc
Q 016639 193 LDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS 271 (385)
Q Consensus 193 l~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~ 271 (385)
...++..|-+++..... |.-+.+..-.++|+++|.. ++.-|...+...+.+....-..-+.-+.+.|.|+.|+..+.
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~--Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~ 483 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSN--PEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM 483 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcC--ccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh
Confidence 33344455555443211 2344567788899999975 22333444555666666666767778889999999999998
Q ss_pred cCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639 272 RQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV 342 (385)
Q Consensus 272 ~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~ 342 (385)
+.++..+++..|++|.|..+++.-.. -.+...-|+..++++-... +=.++...+..|+|+..
T Consensus 484 sKDdaLqans~wvlrHlmyncq~~ek--------f~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc 545 (743)
T COG5369 484 SKDDALQANSEWVLRHLMYNCQKNEK--------FKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTC 545 (743)
T ss_pred cchhhhhhcchhhhhhhhhcCcchhh--------hhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhccc
Confidence 87778888999999999988875432 1333445677788775442 33688899999999976
No 87
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=92.60 E-value=0.86 Score=42.06 Aligned_cols=177 Identities=11% Similarity=0.034 Sum_probs=83.4
Q ss_pred CcHhHHHHHHHHHHHHhcCC---ccchhHhhC--CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 016639 188 GSKRVLDSCLKTMALLVHDV---QSTETFRTG--GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKI 262 (385)
Q Consensus 188 ~d~~vl~~Al~aLa~L~~~~---~~~~~i~~~--ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~ 262 (385)
.+.+....|+..|..++.+. +..+.+.+. .-+..+...+.+ ....+...||.++..++..-...-..+ -...
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d--~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~ 95 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD--LRSKVSKTACQLLSDLARQLGSHFEPY-ADIL 95 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H--H---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence 45666777777777777665 111222211 223334444432 245788899999888775433322222 2457
Q ss_pred hHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639 263 DELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV 342 (385)
Q Consensus 263 i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~ 342 (385)
+|.|+..+.+.+..+.+.|..+|..+...-. .....+..++.....+.++.+...++..|..+..
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---------------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCS---------------YSPKILLEILSQGLKSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS----------------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCC---------------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 7888888888776666778888888763211 0011213333333333477777777776766654
Q ss_pred ChH-HHHHHHHcCcHHHHHHHHHhcCCcCcHHH---HHHHHHHH
Q 016639 343 NDE-ICKSVAENGGIDALLRCIDDSGLQGNKTV---ARICCSLL 382 (385)
Q Consensus 343 ~~e-~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v---~k~a~~~L 382 (385)
... ....+...+.++.++..+..+-.+.+.+| +|.++..+
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 432 12222222334555555554444444444 44444433
No 88
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=92.46 E-value=2.4 Score=37.74 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC------CcHhHHHHHHHHHHHHhcCCccchhHh-hCCCcH
Q 016639 148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC------GSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPK 220 (385)
Q Consensus 148 ~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~------~d~~vl~~Al~aLa~L~~~~~~~~~i~-~~ggi~ 220 (385)
+.+..|+...+. .....-..+.+.||+..|+.+|..... .+......++++|-+|++.......++ ..+++.
T Consensus 83 ~~L~~L~v~Lrt-~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~ 161 (187)
T PF06371_consen 83 KILKSLRVSLRT-NPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVN 161 (187)
T ss_dssp HHHHHHHHHHHH-S-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHhcc-CCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHH
Confidence 777788887776 344555577889999999999865431 234677788888888887654344555 467788
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 016639 221 LLVNILIDGNEDPEILNSGFAVVAASA 247 (385)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~ 247 (385)
.++..|.+ .+..+...++-.|..+|
T Consensus 162 ~i~~~L~s--~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 162 LIALSLDS--PNIKTRKLALEILAALC 186 (187)
T ss_dssp HHHHT--T--TSHHHHHHHHHHHHHHH
T ss_pred HHHHHHCC--CCHHHHHHHHHHHHHHH
Confidence 88888864 56788888888887776
No 89
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.45 E-value=6.3 Score=40.38 Aligned_cols=120 Identities=13% Similarity=0.028 Sum_probs=79.0
Q ss_pred HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 016639 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (385)
Q Consensus 175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr 254 (385)
+..|+..|.. .++.+...+..+|+-+-. .+..+.|+.+|++ +++.+...++.++..
T Consensus 88 ~~~L~~~L~d---~~~~vr~aaa~ALg~i~~----------~~a~~~L~~~L~~--~~p~vR~aal~al~~--------- 143 (410)
T TIGR02270 88 LRSVLAVLQA---GPEGLCAGIQAALGWLGG----------RQAEPWLEPLLAA--SEPPGRAIGLAALGA--------- 143 (410)
T ss_pred HHHHHHHhcC---CCHHHHHHHHHHHhcCCc----------hHHHHHHHHHhcC--CChHHHHHHHHHHHh---------
Confidence 7788888876 466688878888875321 2345778888864 466666665544432
Q ss_pred HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHH
Q 016639 255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISAS 334 (385)
Q Consensus 255 ~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~ 334 (385)
......+.++.+|++.+..|..+|+.+|..|-. ...++.|...+.. .++.|...+.
T Consensus 144 ---r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------------------~~a~~~L~~al~d-~~~~VR~aA~ 199 (410)
T TIGR02270 144 ---HRHDPGPALEAALTHEDALVRAAALRALGELPR--------------------RLSESTLRLYLRD-SDPEVRFAAL 199 (410)
T ss_pred ---hccChHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------------------ccchHHHHHHHcC-CCHHHHHHHH
Confidence 112245688999987777888888888876632 3345667766655 3777877777
Q ss_pred HHHHHhhc
Q 016639 335 IALKAVAV 342 (385)
Q Consensus 335 ~aL~~La~ 342 (385)
.+|..+..
T Consensus 200 ~al~~lG~ 207 (410)
T TIGR02270 200 EAGLLAGS 207 (410)
T ss_pred HHHHHcCC
Confidence 77766644
No 90
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.41 E-value=4.8 Score=43.81 Aligned_cols=171 Identities=12% Similarity=-0.033 Sum_probs=101.1
Q ss_pred CcHHHHHHHHh-cccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 016639 173 GGVELVCSICY-KMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN 250 (385)
Q Consensus 173 Gaip~Lv~lL~-~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~ 250 (385)
..+|+.+...+ +...+|.+-...|.-+++++..|.+. +-.-+-.+++|.++.++.+ +..-+...+.|.+..++...
T Consensus 360 ~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D--~sl~VkdTaAwtlgrI~d~l 437 (859)
T KOG1241|consen 360 DIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSD--PSLWVKDTAAWTLGRIADFL 437 (859)
T ss_pred cchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcC--chhhhcchHHHHHHHHHhhc
Confidence 34666766665 44446778888889999999999764 3444678999999999984 34455678899999988765
Q ss_pred hhhHHHHH-hCCChHHHHHHHccCChHHHHHHHHHHHHhcC--CCccchhhhhc-hhHHHHHHhcCcHHHHHHHHhcCC-
Q 016639 251 EVVKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLT--PDDDQVVASQV-YGYARRFAKIGIARALVHSLHAGL- 325 (385)
Q Consensus 251 e~nr~~iv-~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~--~Dd~rv~~g~a-~~~a~~I~e~Ggi~~Lv~lL~~~~- 325 (385)
.+.+-.-. -.+.++.++.-|.... .+..++||++-+|+- -+-.+.. |.+ +.. -+. .-+|..|+..-....
T Consensus 438 ~e~~~n~~~l~~~l~~l~~gL~DeP-rva~N~CWAf~~Laea~~eA~~s~-~qt~~~t--~~y-~~ii~~Ll~~tdr~dg 512 (859)
T KOG1241|consen 438 PEAIINQELLQSKLSALLEGLNDEP-RVASNVCWAFISLAEAAYEAAVSN-GQTDPAT--PFY-EAIIGSLLKVTDRADG 512 (859)
T ss_pred hhhcccHhhhhHHHHHHHHHhhhCc-hHHHHHHHHHHHHHHHHHHhccCC-CCCCccc--hhH-HHHHHHHHhhcccccc
Confidence 53322222 2234444555454433 688899999999961 1111100 000 000 000 012333333322211
Q ss_pred -CHHHHHHHHHHHHHhhcCh-HHHHHH
Q 016639 326 -SSPSLISASIALKAVAVND-EICKSV 350 (385)
Q Consensus 326 -~~~v~~~a~~aL~~La~~~-e~c~~I 350 (385)
....+..+..+|..|..+. ..|-.+
T Consensus 513 nqsNLR~AAYeALmElIk~st~~vy~~ 539 (859)
T KOG1241|consen 513 NQSNLRSAAYEALMELIKNSTDDVYPM 539 (859)
T ss_pred chhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence 2356778888998887663 555444
No 91
>PTZ00429 beta-adaptin; Provisional
Probab=91.78 E-value=24 Score=39.01 Aligned_cols=99 Identities=17% Similarity=0.177 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-------CcHH----HHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN-------GGVE----LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST 210 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-------Gaip----~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~ 210 (385)
.++...-++..|+.=|.. .+|-.|..+.+. ..++ .+...|.. .++-|...|.-++..+-..++
T Consensus 99 ~pelalLaINtl~KDl~d-~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~L~D---~~pYVRKtAalai~Kly~~~p-- 172 (746)
T PTZ00429 99 QPEKALLAVNTFLQDTTN-SSPVVRALAVRTMMCIRVSSVLEYTLEPLRRAVAD---PDPYVRKTAAMGLGKLFHDDM-- 172 (746)
T ss_pred ChHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhhCc--
Confidence 344444555555544443 355555555432 1223 33344433 578899999999998866442
Q ss_pred hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 016639 211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASAT 248 (385)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~ 248 (385)
+.+.+.+=++.|.++|.+ .++.|+..|+.+|..++.
T Consensus 173 elv~~~~~~~~L~~LL~D--~dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 173 QLFYQQDFKKDLVELLND--NNPVVASNAAAIVCEVND 208 (746)
T ss_pred ccccccchHHHHHHHhcC--CCccHHHHHHHHHHHHHH
Confidence 234456778999998874 689999999999988753
No 92
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=91.75 E-value=13 Score=35.73 Aligned_cols=207 Identities=12% Similarity=0.009 Sum_probs=124.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHH-HHcCcHHHHHHHH-hccc---C-----CcHhHHHHHHHHHHHHhcCCccch
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVA-TKNGGVELVCSIC-YKMR---C-----GSKRVLDSCLKTMALLVHDVQSTE 211 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~-~~~Gaip~Lv~lL-~~~~---~-----~d~~vl~~Al~aLa~L~~~~~~~~ 211 (385)
+++.-.+|+.+|+.--.. .++-...+ ..-|.+..|++=. +-.. + ....-.++|+.-|-.++.+++.+.
T Consensus 8 ~~~~Re~Al~eLsk~r~~--~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~ 85 (262)
T PF04078_consen 8 NPETRENALLELSKKRES--FPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRM 85 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC---TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHH
T ss_pred CcchHHHHHHHHHHhhhc--ccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHH
Confidence 344445555555544332 33322233 3346666665522 2110 0 011335666666666677777788
Q ss_pred hHhhCCCcHHHHHHHhcCCCC---HHHHHHHHHHHHHHhcCChh-hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHH
Q 016639 212 TFRTGGGPKLLVNILIDGNED---PEILNSGFAVVAASATGNEV-VKESYMELKIDELILEILSRQRNDSIQSLYDAIRV 287 (385)
Q Consensus 212 ~i~~~ggi~~Lv~lL~~~~~~---~~v~~~a~~~L~~~~~~~e~-nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~ 287 (385)
.|+++.-+-.|.-+|+..... ..+.-.++.+++.+...++. ...-+....++|..+..|..|+.-...-|.-.+-.
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK 165 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK 165 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999988888888764433 23456778888887653332 33344578999999999999986444446666666
Q ss_pred hcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHH
Q 016639 288 LLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE 352 (385)
Q Consensus 288 Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e 352 (385)
+-.+|+--.-+-++++.-..++. ++..++.-|....++.+++.+.+.-.+|+-++..|..+..
T Consensus 166 IL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~~ 228 (262)
T PF04078_consen 166 ILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALRQ 228 (262)
T ss_dssp HHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHHH
T ss_pred HHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 76666544334444555554543 5677777776655788999999999999998888877764
No 93
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=91.35 E-value=0.76 Score=38.83 Aligned_cols=73 Identities=18% Similarity=0.118 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
..++.|...+..+ .++..+.-|+..|...++- .|..|.++.+.|+=..+++||.+ .|+++.-.||.++.
T Consensus 43 ~llk~L~~lL~~s------~d~~~laVac~Dig~~vr~--~p~gr~ii~~lg~K~~vM~Lm~h---~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 43 ELLKKLIKLLDKS------DDPTTLAVACHDIGEFVRH--YPNGRNIIEKLGAKERVMELMNH---EDPEVRYEALLAVQ 111 (119)
T ss_dssp HHHHHHHHHH-SH------HHHHHHHHHHHHHHHHHHH---GGGHHHHHHHSHHHHHHHHTS----SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC------CCcceeehhhcchHHHHHH--ChhHHHHHHhcChHHHHHHHhcC---CCHHHHHHHHHHHH
Confidence 4577788887542 1778888899999999997 89999999999999999999988 59999999999998
Q ss_pred HHhc
Q 016639 202 LLVH 205 (385)
Q Consensus 202 ~L~~ 205 (385)
-+..
T Consensus 112 klm~ 115 (119)
T PF11698_consen 112 KLMV 115 (119)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 94
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.33 E-value=2.9 Score=45.40 Aligned_cols=150 Identities=11% Similarity=0.050 Sum_probs=90.9
Q ss_pred cCcHHHHHHHHhcccCCc-H------hHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHH--HHHHHHHH
Q 016639 172 NGGVELVCSICYKMRCGS-K------RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE--ILNSGFAV 242 (385)
Q Consensus 172 ~Gaip~Lv~lL~~~~~~d-~------~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~--v~~~a~~~ 242 (385)
.+.+|.|+++|.+..+++ . +-...||..++-.+ |+ +| ++.++.+.+.+-.+++ -...+.-+
T Consensus 318 ~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~-~D----~I-----v~~Vl~Fiee~i~~pdwr~reaavmA 387 (859)
T KOG1241|consen 318 QDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV-GD----DI-----VPHVLPFIEENIQNPDWRNREAAVMA 387 (859)
T ss_pred hHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-cc----cc-----hhhhHHHHHHhcCCcchhhhhHHHHH
Confidence 478999999987743221 1 22333444444433 32 33 3455666654433333 33445555
Q ss_pred HHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHh
Q 016639 243 VAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH 322 (385)
Q Consensus 243 L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~ 322 (385)
...+.-+-+..+-.-+..+++|.++.+|...+.-+...+.|+|..++-.-.. +..| .....+.+..++.-|.
T Consensus 388 FGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e------~~~n--~~~l~~~l~~l~~gL~ 459 (859)
T KOG1241|consen 388 FGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPE------AIIN--QELLQSKLSALLEGLN 459 (859)
T ss_pred HHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchh------hccc--HhhhhHHHHHHHHHhh
Confidence 5556667777777666789999999999966656667799999988621100 0001 1112345666666665
Q ss_pred cCCCHHHHHHHHHHHHHhh
Q 016639 323 AGLSSPSLISASIALKAVA 341 (385)
Q Consensus 323 ~~~~~~v~~~a~~aL~~La 341 (385)
. .+.+..++||++..|+
T Consensus 460 D--ePrva~N~CWAf~~La 476 (859)
T KOG1241|consen 460 D--EPRVASNVCWAFISLA 476 (859)
T ss_pred h--CchHHHHHHHHHHHHH
Confidence 5 5778899999999997
No 95
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=89.99 E-value=22 Score=37.68 Aligned_cols=154 Identities=16% Similarity=0.143 Sum_probs=109.7
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC-CcHhHHHHHHHHHHHHhcCCccchhHhhCCCcH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC-GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK 220 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~-~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~ 220 (385)
+......++..|..++. ++.....+....++..|..+...... ....++..++++++.+....-..=+.+...++.
T Consensus 96 ~~~~~~~a~k~l~sls~---d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~~~~~~fV~ 172 (713)
T KOG2999|consen 96 NNISKMEALKELDSLSL---DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWESVSNDFVV 172 (713)
T ss_pred CcHHHHHHHHHHhhccc---cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeeeecccHHHH
Confidence 45566669999999877 57767777778889999999987532 135788888999988764321111223344444
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc--CCCccchhh
Q 016639 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL--TPDDDQVVA 298 (385)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt--~~Dd~rv~~ 298 (385)
....+......+..+...|+..+-++..+...-++.|.+.--+..|+..|+..+..++..|.+.|-+|. .+||-|-+.
T Consensus 173 ~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a~~~~R~~~ 252 (713)
T KOG2999|consen 173 SMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKAPDDKRFEM 252 (713)
T ss_pred HHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhCChHHHHHH
Confidence 555555444456677888899999988888888899999999999999999887777777777777764 455555443
No 96
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=89.84 E-value=23 Score=35.36 Aligned_cols=196 Identities=10% Similarity=0.082 Sum_probs=125.8
Q ss_pred HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc-----hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q 016639 170 TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-----ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVA 244 (385)
Q Consensus 170 ~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~-----~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~ 244 (385)
.+.|.++.|+..|... +-+..-.+....+++....... .+.+.....+.+..+++. .+++++.-.+-..|+
T Consensus 73 ~~~dll~~Li~~L~~L---~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~g-y~~~dial~~g~mlR 148 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKL---DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRG-YENPDIALNCGDMLR 148 (335)
T ss_dssp HHHTHHHHHHHTGGGS----HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHG-GGSTTTHHHHHHHHH
T ss_pred HHhCHHHHHHHHhhhC---CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHH-hcCccccchHHHHHH
Confidence 3457888888888774 6666666677777777553221 223455556666666665 456677666555555
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh--cCcHHHHHHHHh
Q 016639 245 ASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLH 322 (385)
Q Consensus 245 ~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e--~Ggi~~Lv~lL~ 322 (385)
. |.++|..-..+.....+..+.+.++.++.++...|..+++.|-+... .. . +..+-. ..-...+..+|.
T Consensus 149 e-c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk--~~-~-----a~fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 149 E-CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK--KL-V-----AEFLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp H-HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH--HH-H-----HHHHHHTHHHHHHHHHHHCT
T ss_pred H-HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH--HH-H-----HHHHHHHHHHHHHHHHHHcc
Confidence 5 77999887888888999999999999999999999999999754211 10 0 111221 123456777776
Q ss_pred cCCCHHHHHHHHHHHHHhhcChHHH----HHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 323 AGLSSPSLISASIALKAVAVNDEIC----KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 323 ~~~~~~v~~~a~~aL~~La~~~e~c----~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
+. |=-++..++..|+.+-.+..+- +-|.+..-+..++.+|++ ..+.+.=+|+.+.+
T Consensus 220 s~-NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d----~sk~Iq~eAFhvFK 279 (335)
T PF08569_consen 220 SS-NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRD----KSKNIQFEAFHVFK 279 (335)
T ss_dssp -S-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-----S-HHHHHHHHHHHH
T ss_pred CC-CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcC----cchhhhHHHHHHHH
Confidence 63 6557788899999998765433 334455678888888876 33467777776653
No 97
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=89.36 E-value=21 Score=34.21 Aligned_cols=161 Identities=13% Similarity=0.031 Sum_probs=106.5
Q ss_pred hHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCC---CCHHHHHHHHHHHHHHhcCChhh-HHHHHhCCChHHH
Q 016639 191 RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVV-KESYMELKIDELI 266 (385)
Q Consensus 191 ~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~~~~~~e~n-r~~iv~~G~i~~L 266 (385)
.-+++|+.-|-.++...+.+..|+++.-.-.+.-+|.... ...-+.-.++.+|.++....+.- ..-++..+++|..
T Consensus 94 nRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 94 NRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred chHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 4467777777777777777899999999888888886543 34446667888888876544432 3334578999999
Q ss_pred HHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHH
Q 016639 267 LEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI 346 (385)
Q Consensus 267 v~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~ 346 (385)
+..|..|+..-..-|...+-.+-.||+----+=.++|.--.+. -.+.-++.-|.+..+..+++.+.+...+|+-++..
T Consensus 174 Lrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~--~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra 251 (293)
T KOG3036|consen 174 LRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVA--LVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA 251 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence 9999999975555566666666666652211111222222222 23455555555544677888888888888888877
Q ss_pred HHHHHHc
Q 016639 347 CKSVAEN 353 (385)
Q Consensus 347 c~~I~e~ 353 (385)
|...-.+
T Consensus 252 r~aL~~c 258 (293)
T KOG3036|consen 252 RAALRSC 258 (293)
T ss_pred HHHHHhh
Confidence 7766543
No 98
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.06 E-value=13 Score=36.63 Aligned_cols=107 Identities=11% Similarity=0.157 Sum_probs=74.4
Q ss_pred HHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHh--hCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 016639 177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR--TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (385)
Q Consensus 177 ~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~--~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr 254 (385)
-||+++.+. ++.+...|...|.+++.+ .. +.+. +..-++.+.++++.... ...|+.++.|++. ++..+
T Consensus 7 elv~ll~~~---sP~v~~~AV~~l~~lt~~-~~-~~~~~~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq-~~~l~ 76 (353)
T KOG2973|consen 7 ELVELLHSL---SPPVRKAAVEHLLGLTGR-GL-QSLSKYSEALLKDLTQLLKDLDP----AEPAATALVNLSQ-KEELR 76 (353)
T ss_pred HHHHHhccC---ChHHHHHHHHHHhhcccc-ch-hhhccchhhhHHHHHHHccCccc----ccHHHHHHHHHHh-hHHHH
Confidence 467777764 677888888888887765 21 2222 23456777777765321 5567778888765 45566
Q ss_pred HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCcc
Q 016639 255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDD 294 (385)
Q Consensus 255 ~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~ 294 (385)
..+++. .+..++..+-.......+..|.+|.||+.+|+.
T Consensus 77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~ 115 (353)
T KOG2973|consen 77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDE 115 (353)
T ss_pred HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchH
Confidence 777765 777777777776557888899999999988874
No 99
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=88.88 E-value=0.96 Score=38.22 Aligned_cols=71 Identities=15% Similarity=0.179 Sum_probs=55.5
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
.+..|+++|.. ++++.+++-||.=|...+.-++.-|..+-+.|+=+.+..+|.+.+.+|..+|.-++..|.
T Consensus 44 llk~L~~lL~~-s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDK-SDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-CCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 46677777743 236778888999999998888888877778899999999999988899999998887663
No 100
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=88.59 E-value=26 Score=34.41 Aligned_cols=204 Identities=17% Similarity=0.128 Sum_probs=100.9
Q ss_pred hhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHH----HHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCC
Q 016639 62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTL----SLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDK 137 (385)
Q Consensus 62 ~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qf----e~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~ 137 (385)
-.-+|+.|.+-+++.|+.+.=.-....+.+.+.+ ..+ + +...+ .+...+.++.+...+-..
T Consensus 34 e~~~~~~~e~~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~-~-~~d~v----------~~~~~tL~~~~~k~lkkg--- 98 (309)
T PF05004_consen 34 EESSQEDLEDKLKEAIDLLTEKSSSTREAALEALIRALSSR-Y-LPDFV----------EDRRETLLDALLKSLKKG--- 98 (309)
T ss_pred cccchhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc-c-cHHHH----------HHHHHHHHHHHHHHhccC---
Confidence 3466777777788888877543344444444332 221 1 11111 011224455555555332
Q ss_pred CCcccHHHHHHHHHHHHHHhcCCC-ChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhc--CCccchhHh
Q 016639 138 FSDEDLNEMMGLFDKLIELCGGNE-GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVH--DVQSTETFR 214 (385)
Q Consensus 138 ~~~~~~~~~~~al~~L~~lc~~~~-~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~--~~~~~~~i~ 214 (385)
..++..-++..+..+|-.-. +.+...++- ...|+|...+.... ....+...|+.+|+.++. +.+. .++.
T Consensus 99 ----~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~--~~~~~L~~~l~d~s-~~~~~R~~~~~aLai~~fv~~~d~-~~~~ 170 (309)
T PF05004_consen 99 ----KSEEQALAARALALLALTLGAGEDSEEIFE--ELKPVLKRILTDSS-ASPKARAACLEALAICTFVGGSDE-EETE 170 (309)
T ss_pred ----CHHHHHHHHHHHHHHhhhcCCCccHHHHHH--HHHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHhhcCCh-hHHH
Confidence 33667777777777765400 122222222 46788888887642 234455666777776542 2111 1111
Q ss_pred h-CCCcHHHHH--HHhcC--------CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHH
Q 016639 215 T-GGGPKLLVN--ILIDG--------NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYD 283 (385)
Q Consensus 215 ~-~ggi~~Lv~--lL~~~--------~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~ 283 (385)
+ ...++.++. .++.. .+++.++..|+..-.-+.+.-+..+-.-.-...++.|+.+|.+.+.+|+..|.-
T Consensus 171 ~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGE 250 (309)
T PF05004_consen 171 ELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGE 250 (309)
T ss_pred HHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 0 011221111 11111 123456555544434344444442222112346899999999888788888766
Q ss_pred HHHHh
Q 016639 284 AIRVL 288 (385)
Q Consensus 284 aL~~L 288 (385)
+|.-|
T Consensus 251 aiAll 255 (309)
T PF05004_consen 251 AIALL 255 (309)
T ss_pred HHHHH
Confidence 66655
No 101
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=88.26 E-value=5.7 Score=36.53 Aligned_cols=133 Identities=10% Similarity=0.071 Sum_probs=72.8
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~ 221 (385)
.......++..+..++.. ..+...-.-...+|.|+..+.. ...-+...|..+|..++..... ....
T Consensus 66 Rs~v~~~A~~~l~~l~~~---l~~~~~~~~~~~l~~Ll~~~~~---~~~~i~~~a~~~L~~i~~~~~~--------~~~~ 131 (228)
T PF12348_consen 66 RSKVSKTACQLLSDLARQ---LGSHFEPYADILLPPLLKKLGD---SKKFIREAANNALDAIIESCSY--------SPKI 131 (228)
T ss_dssp ---HHHHHHHHHHHHHHH---HGGGGHHHHHHHHHHHHHGGG------HHHHHHHHHHHHHHHTTS-H----------HH
T ss_pred HHHHHHHHHHHHHHHHHH---HhHhHHHHHHHHHHHHHHHHcc---ccHHHHHHHHHHHHHHHHHCCc--------HHHH
Confidence 344666777777777663 2222221222357777777765 3566788888888888764320 1122
Q ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHHhcCChhhHHHHHh----CCChHHHHHHHccCChHHHHHHHHHHHHh
Q 016639 222 LVNILID--GNEDPEILNSGFAVVAASATGNEVVKESYME----LKIDELILEILSRQRNDSIQSLYDAIRVL 288 (385)
Q Consensus 222 Lv~lL~~--~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~----~G~i~~Lv~lL~~~~~~v~k~A~~aL~~L 288 (385)
+...+.. ...++.+...++.++..+..........+-. ...++.+...|...+.+|.+.|-.++..+
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWAL 204 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 2333322 2357888888999998887666522222222 23667778888888878888777667666
No 102
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=87.75 E-value=1.9 Score=38.41 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=67.9
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh---------HHHHHHHHHHHHh
Q 016639 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN---------DSIQSLYDAIRVL 288 (385)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~---------~v~k~A~~aL~~L 288 (385)
.++..++.|+......+++..--..|+ +.+-.-.+.|++.||+..|+.+|..... ..+.++..+|+.|
T Consensus 67 ~p~~~i~~L~~~~~~~~~L~~L~v~Lr---t~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTSKILKSLRVSLR---TNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp HHHHHHHHHTTT--HHHHHHHHHHHHH---HS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHccCccHHHHHHHHHHhc---cCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 345556666554333233333333333 2334567889999999999999965221 5677789999999
Q ss_pred cCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 289 LTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 289 t~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
.....-+ ...+...+++..|+..|.+. +..+...++..|..++
T Consensus 144 ~n~~~G~---------~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGL---------EAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHH---------HHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred HccHHHH---------HHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence 7543211 12233578999999999774 6677778888887765
No 103
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=87.59 E-value=25 Score=38.48 Aligned_cols=264 Identities=16% Similarity=0.085 Sum_probs=150.1
Q ss_pred HhhHHhcCCChhHHHHHHHHH--HHHcCCC-CCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHH
Q 016639 74 KENMEDLGMEPTEALQDAIQT--LSLQGVD-LSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLF 150 (385)
Q Consensus 74 ~eni~~f~m~~~eAl~~aI~q--fe~QGvd-Lsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al 150 (385)
..|+..+...+.|..++.++- |..|-|. ++-.. -..++......+....... ..+.+.+..
T Consensus 418 l~s~a~~~~~~sE~~qel~~la~~a~qev~~~~~~n---------~~~v~~~r~rk~~~~~~~~-------~~~svakt~ 481 (748)
T KOG4151|consen 418 LYSEAMEEEVTSEKAQELFDLAAFAFQEVAALSPLN---------WGNVHMSRARKRLSLDEDP-------SCESVAKTV 481 (748)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhccccc---------cchHHHHHHHHhhccCcch-------hhhHHHHHH
Confidence 345555555565666665543 6666662 33221 1123433344444333221 333333333
Q ss_pred H--HHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh---CCCcHHHHHH
Q 016639 151 D--KLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNI 225 (385)
Q Consensus 151 ~--~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~---~ggi~~Lv~l 225 (385)
. ..+++..+ ...-|...++-|++..|+.++... .+.....+-++|+.- -+|-. ...++++..+
T Consensus 482 ~~~~~E~~aA~--~K~~~~~~Ik~~~~~aLlrl~~~q---~e~akl~~~~aL~~~-------i~f~~~~~~~v~~~~~s~ 549 (748)
T KOG4151|consen 482 SWAKNEYLAAK--EKYERAKKIKPGGYEALLRLGQQQ---FEEAKLKWYHALAGK-------IDFPGERSYEVVKPLDSA 549 (748)
T ss_pred HHHHHHHHhhh--hHHhcCccccccHHHHHHHHHHHh---chHHHHHHHHHHhhh-------cCCCCCchhhhhhhhcch
Confidence 3 33333322 344466677889999999998764 344444555666521 12221 2233444444
Q ss_pred HhcCCCCHHH--HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchh
Q 016639 226 LIDGNEDPEI--LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYG 303 (385)
Q Consensus 226 L~~~~~~~~v--~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~ 303 (385)
+.. +.+. .=..+-++.|++..++.-|+.|.+.-+++.+-+.+-..+...++.+...+.||.+... -
T Consensus 550 ~~~---d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~---------~ 617 (748)
T KOG4151|consen 550 LHN---DEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL---------L 617 (748)
T ss_pred hhh---hHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH---------H
Confidence 432 2222 2256777888889999999999998888887777666666788889999999975332 3
Q ss_pred HHHHHHh-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHH-HH-HHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHH
Q 016639 304 YARRFAK-IGIARALVHSLHAGLSSPSLISASIALKAVAVNDEI-CK-SVAENGGIDALLRCIDDSGLQGNKTVARICCS 380 (385)
Q Consensus 304 ~a~~I~e-~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~-c~-~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~ 380 (385)
+.+-|++ ..+++-....+.. .+...-...+.++..+++..++ |. ...-..+.+.++.++.+ ++.++.+..+.
T Consensus 618 ~e~si~e~~~~l~~w~~~~e~-~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~----~~~~~qhrgl~ 692 (748)
T KOG4151|consen 618 YERSIVEYKDRLKLWNLNLEV-ADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQD----EDDEIQHRGLV 692 (748)
T ss_pred HHHHhhccccCchHHHHHHHh-hhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcC----chhhhhhhhhh
Confidence 4556776 4567666666555 2333333455566656665544 44 44455788888888765 22356666554
Q ss_pred HH
Q 016639 381 LL 382 (385)
Q Consensus 381 ~L 382 (385)
.+
T Consensus 693 ~~ 694 (748)
T KOG4151|consen 693 II 694 (748)
T ss_pred hh
Confidence 44
No 104
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=87.01 E-value=4.8 Score=44.08 Aligned_cols=165 Identities=17% Similarity=0.170 Sum_probs=103.7
Q ss_pred HHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH--HHHHHHccCCh
Q 016639 199 TMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDE--LILEILSRQRN 275 (385)
Q Consensus 199 aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~--~Lv~lL~~~~~ 275 (385)
+|++++...+. +..+++.+|+..+...++.. +..+++...+..+.+++..-+ ++...+..--+. .+-..+...+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~~-~~~~~~~~~~~~~~~f~~~~~~w~~ 571 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVLE-LRELLMIFEFIDFSVFKVLLNKWDS 571 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHHHHHhhcch
Confidence 66676665544 58899999999999999987 788899999999999876443 333222211111 22223444343
Q ss_pred -HHHHHHHHHHHHhcCCCccchhhhhc-------hhHHHHH-------HhcCcHHH-HHHHHhcCCCHHHHHHHHHHHHH
Q 016639 276 -DSIQSLYDAIRVLLTPDDDQVVASQV-------YGYARRF-------AKIGIARA-LVHSLHAGLSSPSLISASIALKA 339 (385)
Q Consensus 276 -~v~k~A~~aL~~Lt~~Dd~rv~~g~a-------~~~a~~I-------~e~Ggi~~-Lv~lL~~~~~~~v~~~a~~aL~~ 339 (385)
+.-=.|+..|+.+..+.+....-+.- .++...+ .-.....+ +..+++....++.+-.+.+++.+
T Consensus 572 ~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~ 651 (699)
T KOG3665|consen 572 IERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKN 651 (699)
T ss_pred hhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHH
Confidence 44445888888887664432211110 0111111 11122344 66666665555667788899999
Q ss_pred hhcC-hHHHHHHHHcCcHHHHHHHHHh
Q 016639 340 VAVN-DEICKSVAENGGIDALLRCIDD 365 (385)
Q Consensus 340 La~~-~e~c~~I~e~GGl~~Lv~ll~~ 365 (385)
+... .++|..+.+.||+..+.+....
T Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 652 VLEQNKEYCKLVRESNGFELIENIRVL 678 (699)
T ss_pred HHHcChhhhhhhHhccchhhhhhcchh
Confidence 8865 5899999999999999776443
No 105
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=86.67 E-value=11 Score=33.77 Aligned_cols=92 Identities=9% Similarity=-0.014 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcC
Q 016639 233 PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG 312 (385)
Q Consensus 233 ~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~G 312 (385)
+.+...++.++..+|..++..- ...++.+...|+..+..|.+.|.-+|..|...|-+|+. | .
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~v-----e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k-~------------~ 63 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLV-----EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK-G------------Q 63 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHH-----HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh-h------------h
Confidence 5677788888998888876433 24578999999999889999999999999988876653 1 1
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639 313 IARALVHSLHAGLSSPSLISASIALKAVAVN 343 (385)
Q Consensus 313 gi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~ 343 (385)
.+..++.+|.. .++.+...+...+..+...
T Consensus 64 l~~~~l~~l~D-~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 64 LFSRILKLLVD-ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred hhHHHHHHHcC-CCHHHHHHHHHHHHHHHHh
Confidence 12444455533 2555555555555555443
No 106
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=86.47 E-value=5.2 Score=30.82 Aligned_cols=68 Identities=12% Similarity=0.019 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcC
Q 016639 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354 (385)
Q Consensus 277 v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~G 354 (385)
.+|.|.|++.++...+. -...+-+.+.++.++++....+.-.++..++.+|.-++...+-+..+.+.|
T Consensus 3 ~lKaaLWaighIgss~~----------G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 3 ELKAALWAIGHIGSSPL----------GIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHHhHhcChH----------HHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 46889999999974322 122333678999999999886555678888999999999999988888876
No 107
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=86.32 E-value=2.2 Score=37.65 Aligned_cols=84 Identities=13% Similarity=0.198 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCcc-c-hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHH
Q 016639 192 VLDSCLKTMALLVHDVQS-T-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEI 269 (385)
Q Consensus 192 vl~~Al~aLa~L~~~~~~-~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~l 269 (385)
-...++.+++.+..+.+. . +-+...|-++.++.++....++..++..++.+|..+|. ++.+|..| ...+++.|.+.
T Consensus 59 ~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I-~~~~~~~L~~~ 136 (157)
T PF11701_consen 59 SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFI-SKNYVSWLKEL 136 (157)
T ss_dssp HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCC-HHHCHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHH-HHHHHHHHHHH
Confidence 456678899988887644 2 33345666777888888566788999999999999884 56555544 56789999999
Q ss_pred HccCChHH
Q 016639 270 LSRQRNDS 277 (385)
Q Consensus 270 L~~~~~~v 277 (385)
++...++.
T Consensus 137 ~~~~~~~~ 144 (157)
T PF11701_consen 137 YKNSKDDS 144 (157)
T ss_dssp TTTCC-HH
T ss_pred HccccchH
Confidence 97666544
No 108
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.35 E-value=13 Score=40.81 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHH
Q 016639 120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKT 199 (385)
Q Consensus 120 v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~a 199 (385)
+...|+.++..+.++ +...+...+..+-.++-. +. ....+.+||.+|++. ..++.-.|+.
T Consensus 285 ~~lLL~stkpLl~S~-------n~sVVmA~aql~y~lAP~-----~~----~~~i~kaLvrLLrs~----~~vqyvvL~n 344 (968)
T KOG1060|consen 285 LKLLLQSTKPLLQSR-------NPSVVMAVAQLFYHLAPK-----NQ----VTKIAKALVRLLRSN----REVQYVVLQN 344 (968)
T ss_pred HHHHHHhccHHHhcC-------CcHHHHHHHhHHHhhCCH-----HH----HHHHHHHHHHHHhcC----CcchhhhHHH
Confidence 335667777777665 667777777777666432 21 123478999999874 3444444566
Q ss_pred HHHHhcCCcc--ch------------------------hHhhCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCCh
Q 016639 200 MALLVHDVQS--TE------------------------TFRTGGGPKLLVNILIDG--NEDPEILNSGFAVVAASATGNE 251 (385)
Q Consensus 200 La~L~~~~~~--~~------------------------~i~~~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~~~~~~~e 251 (385)
++.++...+. .+ .++++.-+..+++=|..+ ..+-++...+..+|..++...-
T Consensus 345 Ia~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~ 424 (968)
T KOG1060|consen 345 IATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRIG 424 (968)
T ss_pred HHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC
Confidence 6666543321 00 013445555555555432 1233577777777776543322
Q ss_pred hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCc
Q 016639 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293 (385)
Q Consensus 252 ~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd 293 (385)
. +..-.+..|+.+|++|+..|+-++...|+-|...|.
T Consensus 425 s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 425 S-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred c-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 2 234567789999999988899999999999875443
No 109
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.99 E-value=4.9 Score=43.61 Aligned_cols=105 Identities=17% Similarity=0.141 Sum_probs=67.8
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (385)
+++.++.=+.. .++.+..-|+++++.+..+. +-.-...++.+.|++ +++-+...+...+.. -+..+
T Consensus 87 avnt~~kD~~d---~np~iR~lAlrtm~~l~v~~------i~ey~~~Pl~~~l~d--~~~yvRktaa~~vak---l~~~~ 152 (734)
T KOG1061|consen 87 AVNTFLKDCED---PNPLIRALALRTMGCLRVDK------ITEYLCDPLLKCLKD--DDPYVRKTAAVCVAK---LFDID 152 (734)
T ss_pred hhhhhhccCCC---CCHHHHHHHhhceeeEeehH------HHHHHHHHHHHhccC--CChhHHHHHHHHHHH---hhcCC
Confidence 34444444433 46777777777777654431 112234555556654 345555555444443 34567
Q ss_pred HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 016639 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD 292 (385)
Q Consensus 254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~D 292 (385)
.+.+.++|.++.|..++...+..|+.+|.++|+.+...+
T Consensus 153 ~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 153 PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 788889999999999999767689999999999997443
No 110
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=83.13 E-value=17 Score=31.91 Aligned_cols=136 Identities=15% Similarity=0.174 Sum_probs=80.0
Q ss_pred CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccc
Q 016639 216 GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQ 295 (385)
Q Consensus 216 ~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~r 295 (385)
.+.++.++..|.......++...+.-++.... +..++.+.+ -.-+-+-..+..+..+-...++.++..|
T Consensus 2 ~~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~l------- 70 (157)
T PF11701_consen 2 SDELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTAL------- 70 (157)
T ss_dssp CCCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHH-------
Confidence 34566677766642345566666666666552 455554432 2333444445444334555677777776
Q ss_pred hhhhhchhHHHHHH-hcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHh
Q 016639 296 VVASQVYGYARRFA-KIGIARALVHSLHAGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD 365 (385)
Q Consensus 296 v~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~ 365 (385)
|-..++-+..|. ..|.++.++.++.... +..+...++.+|..=| .++.|....-..|++.|.+..+.
T Consensus 71 --fp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc-~d~~~r~~I~~~~~~~L~~~~~~ 139 (157)
T PF11701_consen 71 --FPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC-IDKSCRTFISKNYVSWLKELYKN 139 (157)
T ss_dssp --CTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT-TSHHHHHCCHHHCHHHHHHHTTT
T ss_pred --hCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHHHHHHHHcc
Confidence 233345555666 6788888888888333 5666666666665544 45566555555888888887755
No 111
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=82.80 E-value=55 Score=32.77 Aligned_cols=160 Identities=9% Similarity=0.034 Sum_probs=98.3
Q ss_pred HHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHH-Hhc
Q 016639 150 FDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNI-LID 228 (385)
Q Consensus 150 l~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~l-L~~ 228 (385)
+-++-+-|+. ..-......+.+|.+|.++...-. .|.++...|..++..+..-++....+.+..-.+.+--. |..
T Consensus 106 igcilEdcDt-naVseillvvNaeilklildcIgg---eddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaa 181 (524)
T KOG4413|consen 106 IGCILEDCDT-NAVSEILLVVNAEILKLILDCIGG---EDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAA 181 (524)
T ss_pred hhHHHhcCch-hhHHHHHHHhhhhHHHHHHHHHcC---CcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHh
Confidence 3344444543 122333445688999999988765 47788888999999887654434455555444433211 111
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHH
Q 016639 229 GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARR 307 (385)
Q Consensus 229 ~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~ 307 (385)
..+.-+....+..|-.+.+.....-...-+.|.++.|..=|+...+ -|+-++......|+.. +|.+.
T Consensus 182 -kcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaet-----------eHgre 249 (524)
T KOG4413|consen 182 -KCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAET-----------EHGRE 249 (524)
T ss_pred -hhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHH-----------hhhhh
Confidence 1122233355556666666666666666678888888888876444 4555666667777532 34445
Q ss_pred HH-hcCcHHHHHHHHhcCC
Q 016639 308 FA-KIGIARALVHSLHAGL 325 (385)
Q Consensus 308 I~-e~Ggi~~Lv~lL~~~~ 325 (385)
++ +.|.|..++..+....
T Consensus 250 flaQeglIdlicnIIsGad 268 (524)
T KOG4413|consen 250 FLAQEGLIDLICNIISGAD 268 (524)
T ss_pred hcchhhHHHHHHHHhhCCC
Confidence 55 7899999999886644
No 112
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=82.80 E-value=29 Score=38.18 Aligned_cols=131 Identities=18% Similarity=0.163 Sum_probs=74.3
Q ss_pred CcHhHHHHHHHHHHHHhcCCccc--hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 016639 188 GSKRVLDSCLKTMALLVHDVQST--ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDEL 265 (385)
Q Consensus 188 ~d~~vl~~Al~aLa~L~~~~~~~--~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~ 265 (385)
..+.+...|+..++.|+.--..+ ...+..=| -.|.+-|. .+.++++-.-+.+|..++..+...+..=--.|.+|.
T Consensus 811 ksa~vRqqaadlis~la~Vlktc~ee~~m~~lG-vvLyEylg--eeypEvLgsILgAikaI~nvigm~km~pPi~dllPr 887 (1172)
T KOG0213|consen 811 KSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG-VVLYEYLG--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPR 887 (1172)
T ss_pred CChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh-HHHHHhcC--cccHHHHHHHHHHHHHHHHhccccccCCChhhhccc
Confidence 35667777777777764311111 11111111 12233332 357788777777777666544333222223579999
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 016639 266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (385)
Q Consensus 266 Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~ 331 (385)
|.-+|++....|+.++...+-.++......+. +|.+.+ +-=-|+++|+++ ++++..
T Consensus 888 ltPILknrheKVqen~IdLvg~IadrgpE~v~-------aREWMR--IcfeLlelLkah-kK~iRR 943 (1172)
T KOG0213|consen 888 LTPILKNRHEKVQENCIDLVGTIADRGPEYVS-------AREWMR--ICFELLELLKAH-KKEIRR 943 (1172)
T ss_pred chHhhhhhHHHHHHHHHHHHHHHHhcCcccCC-------HHHHHH--HHHHHHHHHHHH-HHHHHH
Confidence 99999998878999988888888754443332 344443 123466677765 443433
No 113
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.59 E-value=51 Score=36.42 Aligned_cols=34 Identities=21% Similarity=0.066 Sum_probs=28.2
Q ss_pred hcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcC
Q 016639 310 KIGIARALVHSLHAGL-SSPSLISASIALKAVAVN 343 (385)
Q Consensus 310 e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~ 343 (385)
+..++..|.+++.++. +..+...++.||..|..+
T Consensus 511 esdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr 545 (866)
T KOG1062|consen 511 ESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSR 545 (866)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhh
Confidence 4567889999999887 667888999999999876
No 114
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=81.24 E-value=5 Score=44.49 Aligned_cols=176 Identities=13% Similarity=0.110 Sum_probs=106.0
Q ss_pred HHHHcCcHHHHHHHHhcccC-----CcHhHHHHHHHHHHHHhcCCccchhHh--------hCCCcHHHHHHHh-cCC-CC
Q 016639 168 VATKNGGVELVCSICYKMRC-----GSKRVLDSCLKTMALLVHDVQSTETFR--------TGGGPKLLVNILI-DGN-ED 232 (385)
Q Consensus 168 ~~~~~Gaip~Lv~lL~~~~~-----~d~~vl~~Al~aLa~L~~~~~~~~~i~--------~~ggi~~Lv~lL~-~~~-~~ 232 (385)
.+.+.|++..+++++..... .-.+++..|+.+|.-++.-.+.+..++ ...||..+++.-. .+. -+
T Consensus 596 nflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~D 675 (1516)
T KOG1832|consen 596 NFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSIVD 675 (1516)
T ss_pred HHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccccC
Confidence 45677899999999875431 113567788888876554433333332 1247877766542 222 38
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHhC-C---ChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHH
Q 016639 233 PEILNSGFAVVAASATGNEVVKESYMEL-K---IDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARR 307 (385)
Q Consensus 233 ~~v~~~a~~~L~~~~~~~e~nr~~iv~~-G---~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~ 307 (385)
++++..|+.+|.++....+++|..++.. | +-+.. .|..++. ..+.+.. ++...
T Consensus 676 pei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks~~le~~l--------------------~~mw~ 733 (1516)
T KOG1832|consen 676 PEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKSAKLEQVL--------------------RQMWE 733 (1516)
T ss_pred HHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCchHHHHHHH--------------------HHHHH
Confidence 9999999999999777776777655421 1 00000 1111111 1122221 11222
Q ss_pred HH-hcCcHHHHHHHHhcCC---C-HHHHHHHHHHHHHhhcChHHHHHHHHcCcHH--HHHHHHHh
Q 016639 308 FA-KIGIARALVHSLHAGL---S-SPSLISASIALKAVAVNDEICKSVAENGGID--ALLRCIDD 365 (385)
Q Consensus 308 I~-e~Ggi~~Lv~lL~~~~---~-~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~--~Lv~ll~~ 365 (385)
-| ..+||+.|+.+|.... + ..+..-+|.+|.-||..++.++.+..+--+. .+..+|+.
T Consensus 734 ~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIltKLpLvt~~~~q~lm~e 798 (1516)
T KOG1832|consen 734 AVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILTKLPLVTNERAQILMAE 798 (1516)
T ss_pred HHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHHhCccccchHHHHHhhC
Confidence 34 4689999999998742 1 2577889999999999999999887654332 24444543
No 115
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=80.15 E-value=31 Score=36.61 Aligned_cols=151 Identities=17% Similarity=0.189 Sum_probs=87.7
Q ss_pred HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCChh
Q 016639 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNE--DPEILNSGFAVVAASATGNEV 252 (385)
Q Consensus 175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~--~~~v~~~a~~~L~~~~~~~e~ 252 (385)
...+.+++.+. +....+ .|+..|+.+..+...-.+|+...|+..|.++..++.. ..++++.+++++..+.. |--
T Consensus 85 a~~i~e~l~~~--~~~~~~-~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elme-hgv 160 (713)
T KOG2999|consen 85 AKRIMEILTEG--NNISKM-EALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELME-HGV 160 (713)
T ss_pred HHHHHHHHhCC--CcHHHH-HHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHh-hce
Confidence 34567777764 233333 3999999998876555788999999999999998765 67777777777765421 110
Q ss_pred h-HHHHHhCCChHHHHHHHcc--CChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639 253 V-KESYMELKIDELILEILSR--QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329 (385)
Q Consensus 253 n-r~~iv~~G~i~~Lv~lL~~--~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v 329 (385)
. -..+ .-.++......... -...+...|...|-+++.+++-.- ..+++.--+..|+..|+.. +..+
T Consensus 161 vsW~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~---------~~v~eev~i~~li~hlq~~-n~~i 229 (713)
T KOG2999|consen 161 VSWESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLR---------QLVAEEVPIETLIRHLQVS-NQRI 229 (713)
T ss_pred eeeeec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHH---------HHHHhcCcHHHHHHHHHhc-chHH
Confidence 0 0000 01122222222211 111566678888888877666221 1244556677777777664 4444
Q ss_pred HHHHHHHHHHh
Q 016639 330 LISASIALKAV 340 (385)
Q Consensus 330 ~~~a~~aL~~L 340 (385)
...+...+..|
T Consensus 230 ~~~aial~nal 240 (713)
T KOG2999|consen 230 QTCAIALLNAL 240 (713)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 116
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=79.13 E-value=1.1e+02 Score=33.87 Aligned_cols=47 Identities=28% Similarity=0.522 Sum_probs=39.9
Q ss_pred HHHHhhcC-hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 336 ALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 336 aL~~La~~-~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+|.++.-. .+.|..+.+.||++.+.+++..+ ++. ++...++.++.|+
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~--~~~~~il~~l~n~ 541 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNE--ELHRKILGLLGNL 541 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cch--hHHHHHHHHHHHH
Confidence 67777655 59999999999999999999997 556 7999999988764
No 117
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=78.67 E-value=29 Score=28.06 Aligned_cols=88 Identities=18% Similarity=0.075 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH-h-cCcHH
Q 016639 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-K-IGIAR 315 (385)
Q Consensus 238 ~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~-e-~Ggi~ 315 (385)
.++..|+.++..-........ .-++++++..+...+..|.-.||.+|.+++. +.-+ .+. . ..+.+
T Consensus 5 ggli~Laa~ai~l~~~~~~~l-~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k-----~~~~-------~~l~~f~~IF~ 71 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKDISKYL-DEILPPVLKCFDDQDSRVRYYACEALYNISK-----VARG-------EILPYFNEIFD 71 (97)
T ss_pred HHHHHHHHHHHHchHhHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH-----HHHH-------HHHHHHHHHHH
Confidence 344555555444443333332 3578999999998888899999999999972 2100 121 1 23556
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639 316 ALVHSLHAGLSSPSLISASIALKAV 340 (385)
Q Consensus 316 ~Lv~lL~~~~~~~v~~~a~~aL~~L 340 (385)
.|+.++... ++.| ++++..|-+|
T Consensus 72 ~L~kl~~D~-d~~V-r~~a~~Ld~l 94 (97)
T PF12755_consen 72 ALCKLSADP-DENV-RSAAELLDRL 94 (97)
T ss_pred HHHHHHcCC-chhH-HHHHHHHHHH
Confidence 777776553 5555 4555566554
No 118
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=78.36 E-value=83 Score=32.07 Aligned_cols=186 Identities=15% Similarity=0.113 Sum_probs=103.9
Q ss_pred HHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHh-c------CCCCHHHHHHHHHHHHHHhc
Q 016639 176 ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILI-D------GNEDPEILNSGFAVVAASAT 248 (385)
Q Consensus 176 p~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~-~------~~~~~~v~~~a~~~L~~~~~ 248 (385)
..++.+..+. .++.....+++.++.|++.-.. .+ -++.+++.+. . ............|....+..
T Consensus 192 ~~l~~~~~~~--~~~~~~~~~~~~la~LvNK~~~-~~-----~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~ 263 (415)
T PF12460_consen 192 QSLLNLALSS--EDEFSRLAALQLLASLVNKWPD-DD-----DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVM 263 (415)
T ss_pred HHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCC-hh-----hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHH
Confidence 3444544443 3456667778888888775211 11 1222222221 1 11233344555666666655
Q ss_pred CChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCC-CccchhhhhchhHHHHHHhc----CcHHHHHHHHhc
Q 016639 249 GNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP-DDDQVVASQVYGYARRFAKI----GIARALVHSLHA 323 (385)
Q Consensus 249 ~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~-Dd~rv~~g~a~~~a~~I~e~----Ggi~~Lv~lL~~ 323 (385)
++...-. ..++.|+++|.+ .++-..++.++..|..+ |+.-. -..|.+.|.+.+. -.+|.|++..+.
T Consensus 264 R~~~~~~-----~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~--~~~~a~vklLykQR~F~~~~p~L~~~~~~ 334 (415)
T PF12460_consen 264 RGHPLAT-----ELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLN--KENHANVKLLYKQRFFTQVLPKLLEGFKE 334 (415)
T ss_pred cCCchHH-----HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcC--ccccchhhhHHhHHHHHHHHHHHHHHHhh
Confidence 5543322 245678888877 34677788889988877 55322 2446666666643 467888888777
Q ss_pred CCCHHHHHHHHHHHHHhhcChHHHHHHHHcC-cHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 324 GLSSPSLISASIALKAVAVNDEICKSVAENG-GIDALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 324 ~~~~~v~~~a~~aL~~La~~~e~c~~I~e~G-Gl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
. +.....+-+.+|+.+..+-+.-.-+-+.+ -++.|++.|. .+|.++...++..|.
T Consensus 335 ~-~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~----~~~~~v~~s~L~tL~ 390 (415)
T PF12460_consen 335 A-DDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLS----LPDADVLLSSLETLK 390 (415)
T ss_pred c-ChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 5 33355666777777766533332232322 4555666663 344467777776664
No 119
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.39 E-value=14 Score=36.30 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=71.6
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH--hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA--KIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 264 ~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~--e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
.-|+++|.+.+..|++.|..-|.+||.. ..|+ +- +.--++.+..++... ++ .+.+..+|-|++
T Consensus 6 ~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~-----------~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnls 70 (353)
T KOG2973|consen 6 VELVELLHSLSPPVRKAAVEHLLGLTGR-GLQS-----------LSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLS 70 (353)
T ss_pred HHHHHHhccCChHHHHHHHHHHhhcccc-chhh-----------hccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHH
Confidence 3578889888888999999888888864 2211 11 223467788887663 33 567888999999
Q ss_pred cChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 342 VNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 342 ~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
...+.+..+... -+..++..+-+ .++ .+++..|.+|.||
T Consensus 71 q~~~l~~~ll~~-~~k~l~~~~~~---p~~-~lad~~cmlL~NL 109 (353)
T KOG2973|consen 71 QKEELRKKLLQD-LLKVLMDMLTD---PQS-PLADLICMLLSNL 109 (353)
T ss_pred hhHHHHHHHHHH-HHHHHHHHhcC---ccc-chHHHHHHHHHHh
Confidence 999888888776 55555555443 332 5888888888875
No 120
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=76.57 E-value=62 Score=35.73 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHH-cCcHHHHHHHHhcccCCcHhHHHHHH
Q 016639 119 PLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCL 197 (385)
Q Consensus 119 ~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~-~Gaip~Lv~lL~~~~~~d~~vl~~Al 197 (385)
|+...|.+|...+-++ ....+.+-+.-+..+|.. +++.. -+.+ ....=-|+++|+++ .+++...|.
T Consensus 880 Pi~dllPrltPILknr-------heKVqen~IdLvg~Iadr--gpE~v-~aREWMRIcfeLlelLkah---kK~iRRaa~ 946 (1172)
T KOG0213|consen 880 PIKDLLPRLTPILKNR-------HEKVQENCIDLVGTIADR--GPEYV-SAREWMRICFELLELLKAH---KKEIRRAAV 946 (1172)
T ss_pred ChhhhcccchHhhhhh-------HHHHHHHHHHHHHHHHhc--CcccC-CHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 3434444444444443 334455566666777775 55510 0000 01233478888875 778888899
Q ss_pred HHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q 016639 198 KTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVA 244 (385)
Q Consensus 198 ~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~ 244 (385)
++++.++. +=|..-++..|-++....+-+...|..++
T Consensus 947 nTfG~Iak----------aIGPqdVLatLlnnLkvqeRq~RvcTtva 983 (1172)
T KOG0213|consen 947 NTFGYIAK----------AIGPQDVLATLLNNLKVQERQNRVCTTVA 983 (1172)
T ss_pred hhhhHHHH----------hcCHHHHHHHHHhcchHHHHHhchhhhhh
Confidence 99888754 22444444555444444444445444443
No 121
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.40 E-value=1.3e+02 Score=33.42 Aligned_cols=217 Identities=11% Similarity=0.099 Sum_probs=109.6
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccch----hHhhCC
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTE----TFRTGG 217 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~----~i~~~g 217 (385)
++-.+..|+.++.+.| |++-.++. +-+..|+.+|... +.=-+.-.++.|..-+..+-..+ ...+..
T Consensus 193 splVvgsAv~AF~evC-----PerldLIH--knyrklC~ll~dv---deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n 262 (968)
T KOG1060|consen 193 SPLVVGSAVMAFEEVC-----PERLDLIH--KNYRKLCRLLPDV---DEWGQVVLINMLTRYARHQLPDPTVVDSSLEDN 262 (968)
T ss_pred CCcchhHHHHHHHHhc-----hhHHHHhh--HHHHHHHhhccch---hhhhHHHHHHHHHHHHHhcCCCccccccccccC
Confidence 4556777888888887 44444553 3477788887653 21112223444444332211111 111111
Q ss_pred --------------Cc----HHHHHHHhc-----CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC
Q 016639 218 --------------GP----KLLVNILID-----GNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR 274 (385)
Q Consensus 218 --------------gi----~~Lv~lL~~-----~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~ 274 (385)
++ +-+--+|++ .+.++.++-+++.+.++++-+++. .+++.+|+.+|+.+.
T Consensus 263 ~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~-------~~i~kaLvrLLrs~~ 335 (968)
T KOG1060|consen 263 GRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV-------TKIAKALVRLLRSNR 335 (968)
T ss_pred cccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH-------HHHHHHHHHHHhcCC
Confidence 11 112222222 235788889999999998865532 235679999999987
Q ss_pred hHHHHHHHHHHHHhcCCCc-cchhh-------hhchhHHH--------HHHhcCcHHHHHHHHhcCC---CHHHHHHHHH
Q 016639 275 NDSIQSLYDAIRVLLTPDD-DQVVA-------SQVYGYAR--------RFAKIGIARALVHSLHAGL---SSPSLISASI 335 (385)
Q Consensus 275 ~~v~k~A~~aL~~Lt~~Dd-~rv~~-------g~a~~~a~--------~I~e~Ggi~~Lv~lL~~~~---~~~v~~~a~~ 335 (385)
. ++--....|..++.-+. .=.++ +.-..+++ .++..+-|..++.=++.+- +..+...+..
T Consensus 336 ~-vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~ 414 (968)
T KOG1060|consen 336 E-VQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVK 414 (968)
T ss_pred c-chhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHH
Confidence 4 33222222333321000 00000 00112222 2333333333333332221 3356677777
Q ss_pred HHHHhhcCh-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 336 ALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 336 aL~~La~~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+++++|.+. .... -.+.-|+.+|.++ +..|+.++...||.|
T Consensus 415 AiGrCA~~~~sv~~-----tCL~gLv~Llssh----de~Vv~eaV~vIk~L 456 (968)
T KOG1060|consen 415 AIGRCASRIGSVTD-----TCLNGLVQLLSSH----DELVVAEAVVVIKRL 456 (968)
T ss_pred HHHHHHHhhCchhh-----HHHHHHHHHHhcc----cchhHHHHHHHHHHH
Confidence 888888764 1111 2355677888875 337888888888754
No 122
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.84 E-value=1.3e+02 Score=33.22 Aligned_cols=113 Identities=19% Similarity=0.211 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH-HHHHHHHhcCCC-ccchhhhhchhHHHHH
Q 016639 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS-LYDAIRVLLTPD-DDQVVASQVYGYARRF 308 (385)
Q Consensus 231 ~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~-A~~aL~~Lt~~D-d~rv~~g~a~~~a~~I 308 (385)
.++..++.|+..+..+..+-.+|....+ +++.|+.+=..+. .+.+. +...||.|...| |+| +++.+-+..+
T Consensus 272 ~~p~alk~Aa~~~i~l~~kesdnnvklI---vldrl~~l~~~~~-~il~~l~mDvLrvLss~dldvr---~Ktldi~ldL 344 (948)
T KOG1058|consen 272 NDPTALKAAASTYIDLLVKESDNNVKLI---VLDRLSELKALHE-KILQGLIMDVLRVLSSPDLDVR---SKTLDIALDL 344 (948)
T ss_pred CCHHHHHHHHHHHHHHHHhccCcchhhh---hHHHHHHHhhhhH-HHHHHHHHHHHHHcCcccccHH---HHHHHHHHhh
Confidence 3556666666666666666555655444 3444444433333 34443 777888886443 333 4566666677
Q ss_pred HhcCcHHHHHHHHhc-----CC---CH--HHHHHHHHHHHHhhcC-hHHHHHH
Q 016639 309 AKIGIARALVHSLHA-----GL---SS--PSLISASIALKAVAVN-DEICKSV 350 (385)
Q Consensus 309 ~e~Ggi~~Lv~lL~~-----~~---~~--~v~~~a~~aL~~La~~-~e~c~~I 350 (385)
+...-++-++..|+. +. ++ .-...+..++...|++ ++....+
T Consensus 345 vssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatv 397 (948)
T KOG1058|consen 345 VSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATV 397 (948)
T ss_pred hhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHH
Confidence 766666677776654 21 11 2245566777777776 4555444
No 123
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=75.53 E-value=75 Score=30.73 Aligned_cols=172 Identities=9% Similarity=-0.006 Sum_probs=103.9
Q ss_pred cHHHHH-HHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639 174 GVELVC-SICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (385)
Q Consensus 174 aip~Lv-~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (385)
.+..|| ..+++ .+..+...|+++|+-.+-=+ .. .....++.+...+.. ++..+...++.++..+...|..
T Consensus 27 ll~~lI~P~v~~---~~~~vR~~al~cLGl~~Lld---~~-~a~~~l~l~~~~~~~--~~~~v~~~al~~l~Dll~~~g~ 97 (298)
T PF12719_consen 27 LLDSLILPAVQS---SDPAVRELALKCLGLCCLLD---KE-LAKEHLPLFLQALQK--DDEEVKITALKALFDLLLTHGI 97 (298)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhC---hH-HHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHcCc
Confidence 344444 34555 47788888888888755322 11 122235667777743 4788888999999888776653
Q ss_pred hHHHH--------HhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcC
Q 016639 253 VKESY--------MELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG 324 (385)
Q Consensus 253 nr~~i--------v~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~ 324 (385)
..-.- .....+..+.+.|.+.+.+++..|+-.++.|-..+-+.. ....+..|+-+.-..
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-------------~~~vL~~Lll~yF~p 164 (298)
T PF12719_consen 98 DIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-------------PPKVLSRLLLLYFNP 164 (298)
T ss_pred hhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-------------HHHHHHHHHHHHcCc
Confidence 21111 123467788888888877888889999999876543221 123344554443332
Q ss_pred C---CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcC
Q 016639 325 L---SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSG 367 (385)
Q Consensus 325 ~---~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~ 367 (385)
. +..++.-+...+...+.....-+.....+.++.+..++....
T Consensus 165 ~t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 165 STEDNQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred ccCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 2 234444455556666766654455556678888777666543
No 124
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=75.44 E-value=21 Score=38.01 Aligned_cols=182 Identities=12% Similarity=0.117 Sum_probs=100.3
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHH----HHHhcCCCCHHHHHHHHHHHHHHhcC
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLV----NILIDGNEDPEILNSGFAVVAASATG 249 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv----~lL~~~~~~~~v~~~a~~~L~~~~~~ 249 (385)
.+|.+-.+|.+..+....+...|..+..++... +...|++.++ .-|.......+ ..++..+...+.
T Consensus 214 iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~-------~~~~aVK~llpsll~~l~~~kWrtK--~aslellg~m~~- 283 (569)
T KOG1242|consen 214 IVPILPSILTNFGDKINKVREAAVEAAKAIMRC-------LSAYAVKLLLPSLLGSLLEAKWRTK--MASLELLGAMAD- 283 (569)
T ss_pred HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHh-------cCcchhhHhhhhhHHHHHHHhhhhH--HHHHHHHHHHHH-
Confidence 456666666665445566766666666665432 2334433332 22221111112 233334443322
Q ss_pred ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639 250 NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329 (385)
Q Consensus 250 ~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v 329 (385)
+-.-.-..--..++|.|.+.|.....++++.+..+|..++.--|+.. |-. .+|.|++.+...... +
T Consensus 284 ~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-----------I~~--~ip~Lld~l~dp~~~-~ 349 (569)
T KOG1242|consen 284 CAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-----------IQK--IIPTLLDALADPSCY-T 349 (569)
T ss_pred hchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-----------HHH--HHHHHHHHhcCcccc-h
Confidence 22233445557899999999998888899999999988864222211 211 367788887664211 2
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 330 LISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 330 ~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
......|..- .|...| +.-.++.++-+++.+....++..-|.++.++.||
T Consensus 350 -~e~~~~L~~t----tFV~~V-~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm 399 (569)
T KOG1242|consen 350 -PECLDSLGAT----TFVAEV-DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNM 399 (569)
T ss_pred -HHHHHhhcce----eeeeee-cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHH
Confidence 2222233221 222222 3366777777777777777777778888777664
No 125
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=75.06 E-value=5.4 Score=24.91 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=23.2
Q ss_pred hHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 263 DELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 263 i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
+|.+++++...+.+|+..|+.+|..++
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 688999999988899999999998875
No 126
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=75.02 E-value=39 Score=30.94 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=58.7
Q ss_pred CCcHHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChhhHHHHHhC--CC--hHHHHHHHccCChHHHHHHHHHHHHh
Q 016639 217 GGPKLLVNILIDGN----EDPEILNSGFAVVAASATGNEVVKESYMEL--KI--DELILEILSRQRNDSIQSLYDAIRVL 288 (385)
Q Consensus 217 ggi~~Lv~lL~~~~----~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~--G~--i~~Lv~lL~~~~~~v~k~A~~aL~~L 288 (385)
..+..|++++..+. +..+-....+.++.|++ ..++-|+-+.+. +. +..|+-.+.+.+..-.+-++++|+|.
T Consensus 52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS-~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLS-QLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhc-CCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHh
Confidence 35677777776521 22333456667788864 788899999854 33 55566666666433333489999999
Q ss_pred cCCCccchhhhhchhHHHHHHh--cCcHHHHHHHHh
Q 016639 289 LTPDDDQVVASQVYGYARRFAK--IGIARALVHSLH 322 (385)
Q Consensus 289 t~~Dd~rv~~g~a~~~a~~I~e--~Ggi~~Lv~lL~ 322 (385)
+++.+. |...+.+ .+.++.|+--|-
T Consensus 131 cFd~~~---------H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 131 CFDTDS---------HEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hccHhH---------HHHhcCchhhhhHHHHHhhcc
Confidence 997763 2222332 356666665554
No 127
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=74.93 E-value=65 Score=32.27 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=93.8
Q ss_pred CcHhHHHHHHHHHHHHhcCCccc-----hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 016639 188 GSKRVLDSCLKTMALLVHDVQST-----ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKI 262 (385)
Q Consensus 188 ~d~~vl~~Al~aLa~L~~~~~~~-----~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~ 262 (385)
+|..+..-+|.+++.++.+.|.+ ..+++++-.+.++..+.. ++.++..++...|..++. .+.--..|.+...
T Consensus 94 ddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgg--eddeVAkAAiesikrial-fpaaleaiFeSel 170 (524)
T KOG4413|consen 94 DDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGG--EDDEVAKAAIESIKRIAL-FPAALEAIFESEL 170 (524)
T ss_pred CcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcC--CcHHHHHHHHHHHHHHHh-cHHHHHHhccccc
Confidence 45667777788888888765421 334678888998888864 678999999999988764 4455566666666
Q ss_pred hHHHHHH---HccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016639 263 DELILEI---LSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKA 339 (385)
Q Consensus 263 i~~Lv~l---L~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~ 339 (385)
.+.+-.. ++..+ -+.-.....+..+ ||-+.+-+.+--+.|.+..|..=|+...|.-|..+.......
T Consensus 171 lDdlhlrnlaakcnd-iaRvRVleLIiei---------fSiSpesaneckkSGLldlLeaElkGteDtLVianciElvte 240 (524)
T KOG4413|consen 171 LDDLHLRNLAAKCND-IARVRVLELIIEI---------FSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTE 240 (524)
T ss_pred CChHHHhHHHhhhhh-HHHHHHHHHHHHH---------HhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHH
Confidence 6555322 22221 1111222233222 222333444444566666666655543244344455555556
Q ss_pred hhcChHHHHHHHHcCcHHHHHHHHH
Q 016639 340 VAVNDEICKSVAENGGIDALLRCID 364 (385)
Q Consensus 340 La~~~e~c~~I~e~GGl~~Lv~ll~ 364 (385)
|+..+-.++-+...|-|+.+-.++.
T Consensus 241 LaeteHgreflaQeglIdlicnIIs 265 (524)
T KOG4413|consen 241 LAETEHGREFLAQEGLIDLICNIIS 265 (524)
T ss_pred HHHHhhhhhhcchhhHHHHHHHHhh
Confidence 6555545555555566666555443
No 128
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=73.67 E-value=70 Score=30.18 Aligned_cols=154 Identities=12% Similarity=0.074 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHhcCCccchhHhhCC---CcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhCC--ChHH
Q 016639 193 LDSCLKTMALLVHDVQSTETFRTGG---GPKLLVNILIDGN--EDPEILNSGFAVVAASATGNEVVKESYMELK--IDEL 265 (385)
Q Consensus 193 l~~Al~aLa~L~~~~~~~~~i~~~g---gi~~Lv~lL~~~~--~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G--~i~~ 265 (385)
+-+++--+.-++...+. ..+.... ....+..++.... .....+--++|+++|+- .++..++.+++.. .+-.
T Consensus 80 ~fP~lDLlRl~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF-~~~~~~~~~~~~~~~~i~~ 157 (268)
T PF08324_consen 80 RFPALDLLRLAALHPPA-SDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLF-SHPPGRQLLLSHFDSSILE 157 (268)
T ss_dssp -HHHHHHHHHHCCCHCH-HHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHT-TSCCCHHHHHCTHHTCHHH
T ss_pred chhHHhHHHHHHhCccH-HHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhh-CCCccHHHHHhcccchHHH
Confidence 44555555544443322 2233222 2566666666544 46667788999999964 6888888888543 2333
Q ss_pred HHHHHccC----ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhc--------CcHHHHHHHHhcC-CCHHHHHH
Q 016639 266 ILEILSRQ----RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI--------GIARALVHSLHAG-LSSPSLIS 332 (385)
Q Consensus 266 Lv~lL~~~----~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~--------Ggi~~Lv~lL~~~-~~~~v~~~ 332 (385)
.+..+... +..++..++..+.|++. .+.+. ..+..+++.+... .+++++-.
T Consensus 158 ~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv----------------~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R 221 (268)
T PF08324_consen 158 LLSSLLSSLLDSNKNVRIALATLLLNLSV----------------LLHKNRSDEEWQSELLSSIIEVLSREESDEEALYR 221 (268)
T ss_dssp HCHCCCTTS-HHHHHHHHHHHHHHHHHHH----------------HHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHH
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHH----------------HHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHH
Confidence 33333333 23566677888888862 11111 1345566644333 36778888
Q ss_pred HHHHHHHhhcChHHHHHHHH-cCcHHHHHHHHH
Q 016639 333 ASIALKAVAVNDEICKSVAE-NGGIDALLRCID 364 (385)
Q Consensus 333 a~~aL~~La~~~e~c~~I~e-~GGl~~Lv~ll~ 364 (385)
++.+|++|...+.......+ .|.-..+.....
T Consensus 222 ~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~ 254 (268)
T PF08324_consen 222 LLVALGTLLSSSDSAKQLAKSLDVKSVLSKKAN 254 (268)
T ss_dssp HHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHH
T ss_pred HHHHHHHHhccChhHHHHHHHcChHHHHHHHHh
Confidence 88899999977655555554 455555544443
No 129
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=73.31 E-value=1.2e+02 Score=31.48 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHH-------HHhhcCC----C--CCCcccHHHHHHHHHHH
Q 016639 87 ALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLK-------QLDLNSK----D--KFSDEDLNEMMGLFDKL 153 (385)
Q Consensus 87 Al~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~-------~~l~~~~----~--~~~~~~~~~~~~al~~L 153 (385)
..=+|+.-++.+|=|++.+..+... .+..-+..+- ....... . ...+++...+...+.-+
T Consensus 86 ~~l~aL~~LT~~Grdi~~~~~~i~~-------~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l 158 (464)
T PF11864_consen 86 LRLEALIALTDNGRDIDFFEYEIGP-------FLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFL 158 (464)
T ss_pred HHHHHHHHHHcCCcCchhcccchHH-------HHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHH
Confidence 5667888889999999876544211 1212222221 1111000 0 11112344567777888
Q ss_pred HHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCH
Q 016639 154 IELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP 233 (385)
Q Consensus 154 ~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~ 233 (385)
.++.|= +...-.--.-.+.+..++.+|.+. .....+..|+..+-.+..-.. +=.+.++.++.+|-+-....
T Consensus 159 ~nviKf--n~~~l~e~~i~~lv~~i~~iC~~T--s~~~di~~~L~vldaii~y~~-----iP~~sl~~~i~vLCsi~~~~ 229 (464)
T PF11864_consen 159 VNVIKF--NFNYLDEDEISSLVDQICTICKST--SSEDDIEACLSVLDAIITYGD-----IPSESLSPCIEVLCSIVNSV 229 (464)
T ss_pred HHHHhc--CCCCCCHHHHHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHcCc-----CChHHHHHHHHHHhhHhccc
Confidence 888875 332222222246688888888775 355566777777777654211 12344556666664433344
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh------HHHHHHHHHHHHhcCCC
Q 016639 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN------DSIQSLYDAIRVLLTPD 292 (385)
Q Consensus 234 ~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~------~v~k~A~~aL~~Lt~~D 292 (385)
++...+..++++++..|-.+ . .+..|..+|...+. .+.+-|...|+.+..+.
T Consensus 230 ~l~~~~w~~m~nL~~S~~g~-~------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~ 287 (464)
T PF11864_consen 230 SLCKPSWRTMRNLLKSHLGH-S------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGS 287 (464)
T ss_pred ccchhHHHHHHHHHcCccHH-H------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcc
Confidence 67778888999988544322 2 34578888832221 66777888888877655
No 130
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=72.67 E-value=87 Score=29.91 Aligned_cols=76 Identities=9% Similarity=0.136 Sum_probs=47.7
Q ss_pred HcCcHHHHHHHHhcccCCcH------h-HHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHH
Q 016639 171 KNGGVELVCSICYKMRCGSK------R-VLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVV 243 (385)
Q Consensus 171 ~~Gaip~Lv~lL~~~~~~d~------~-vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L 243 (385)
+..++|+|+.+++.. ++. + +-+..-+.|+++. .|-++.|.+++.+..-+.=+...++.++
T Consensus 71 e~~A~~~li~l~~~~--~~~~~~l~GD~~tE~l~~ilasv~-----------~G~~~~L~~li~~~~~~~yvR~aa~~aL 137 (249)
T PF06685_consen 71 EERALPPLIRLFSQD--DDFLEDLFGDFITEDLPRILASVG-----------DGDIEPLKELIEDPDADEYVRMAAISAL 137 (249)
T ss_pred hhhhHHHHHHHHcCC--cchHHHHHcchhHhHHHHHHHHHh-----------CCCHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 346899999999863 111 0 1111122333333 3446777788776544555677888888
Q ss_pred HHHhcCChhhHHHHHh
Q 016639 244 AASATGNEVVKESYME 259 (385)
Q Consensus 244 ~~~~~~~e~nr~~iv~ 259 (385)
..++..++.-|..+++
T Consensus 138 ~~l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 138 AFLVHEGPISREEVIQ 153 (249)
T ss_pred HHHHHcCCCCHHHHHH
Confidence 8888888877887764
No 131
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=72.43 E-value=8 Score=24.10 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=23.5
Q ss_pred HHHHHHHHhcccCCcHhHHHHHHHHHHHHhc
Q 016639 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVH 205 (385)
Q Consensus 175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~ 205 (385)
+|.++++++. .++++...|+.+|+.++.
T Consensus 2 lp~l~~~l~D---~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLND---PSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT----SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC---CCHHHHHHHHHHHHHHHh
Confidence 6889999987 589999999999998864
No 132
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.05 E-value=1.8e+02 Score=33.02 Aligned_cols=117 Identities=9% Similarity=-0.064 Sum_probs=68.3
Q ss_pred CcHHHHHHHHhccc-----CCcHhHHHHHHHHHHHHhcC---CccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q 016639 173 GGVELVCSICYKMR-----CGSKRVLDSCLKTMALLVHD---VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVA 244 (385)
Q Consensus 173 Gaip~Lv~lL~~~~-----~~d~~vl~~Al~aLa~L~~~---~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~ 244 (385)
|.++-+++.+.+.. ..++....-|++.+++|+.- ...-.+.++.=-...+.-.+++ +-.-+.+.|||++.
T Consensus 410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s--~~g~Lrarac~vl~ 487 (1010)
T KOG1991|consen 410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQS--PYGYLRARACWVLS 487 (1010)
T ss_pred hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcC--chhHHHHHHHHHHH
Confidence 45666677776322 23456778888998888621 0000112221112222222222 34457889999999
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHhcCCCc
Q 016639 245 ASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDD 293 (385)
Q Consensus 245 ~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~-~~~v~k~A~~aL~~Lt~~Dd 293 (385)
..+..+=.+.. .-..+++....+|.+. ...|.-+|+-||+.+..+++
T Consensus 488 ~~~~~df~d~~--~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 488 QFSSIDFKDPN--NLSEALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HHHhccCCChH--HHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 88743222222 2245677888888854 44899999999999976655
No 133
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=71.97 E-value=1e+02 Score=29.99 Aligned_cols=94 Identities=13% Similarity=0.143 Sum_probs=59.8
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCH----------HHHHHHHHHH
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDP----------EILNSGFAVV 243 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~----------~v~~~a~~~L 243 (385)
+++.|+.++.. +.+..+...|.++|+.+-. ..++..++..|.+..... .+...+...+
T Consensus 106 a~~~li~~l~~--d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l 173 (335)
T COG1413 106 AVPPLVELLEN--DENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEAL 173 (335)
T ss_pred HHHHHHHHHHc--CCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHH
Confidence 68999999986 2578899999999997633 234778888887633111 1111111111
Q ss_pred HHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcC
Q 016639 244 AASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT 290 (385)
Q Consensus 244 ~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~ 290 (385)
.. +-+.-.++.++..+......++..|..+|..+..
T Consensus 174 ~~-----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~ 209 (335)
T COG1413 174 GE-----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGS 209 (335)
T ss_pred HH-----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhc
Confidence 11 1122367888888888777788888877777654
No 134
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=71.77 E-value=1.6e+02 Score=32.16 Aligned_cols=178 Identities=19% Similarity=0.153 Sum_probs=93.6
Q ss_pred chHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcC---cHHHHHHHHhcccCCcHhHHH
Q 016639 118 NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNG---GVELVCSICYKMRCGSKRVLD 194 (385)
Q Consensus 118 ~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~G---aip~Lv~lL~~~~~~d~~vl~ 194 (385)
++..+.|..|.-.+.. +.+.+--++..||...+. +..+-..+-... .+..++..+. .++..+.
T Consensus 541 ~e~~~~l~~l~~l~~w--------p~~~~fPalDilRl~v~h--~~~~s~~~~~~~~~~~~~~li~~~~----~~~an~l 606 (745)
T KOG0301|consen 541 SEVLQSLLALAILLQW--------PVEMMFPALDILRLAVKH--HSSNSLFCDREEGQNLVGTLIPILN----ADPANQL 606 (745)
T ss_pred chhHHHHHHHHHHhcC--------CHHHhhhHHHHHHHHHhc--cchhhhhhhhhhhhHHHHhhhcccc----cchhHHH
Confidence 3565666555555554 678999999999999986 555555544222 3334444443 3566677
Q ss_pred HHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcC--CCCHHHHH--HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHH
Q 016639 195 SCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG--NEDPEILN--SGFAVVAASATGNEVVKESYMELKIDELILEIL 270 (385)
Q Consensus 195 ~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~--~~~~~v~~--~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL 270 (385)
-++++|+|+-.++-.++-+... .+.+...+-.. .++..++. +++..=..++. ...+- +.++.+.|..++
T Consensus 607 l~vR~L~N~f~~~~g~~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l-~~~~~----~~~~~~~l~~ai 679 (745)
T KOG0301|consen 607 LVVRCLANLFSNPAGRELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLL-IQDNE----QLEGKEVLLSAI 679 (745)
T ss_pred HHHHHHHHhccCHHHHHHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH-Hhccc----ccchHHHHHHHH
Confidence 7899999987763222222222 22222222111 12222322 21111112221 22221 267777777777
Q ss_pred ccCCh---HH--HHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCC
Q 016639 271 SRQRN---DS--IQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLS 326 (385)
Q Consensus 271 ~~~~~---~v--~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~ 326 (385)
...-. +. .-.+.-||-+|++.|+. +++|++.-.+..++.-+++..+
T Consensus 680 ~~~~e~~~d~EA~yR~l~AlgtL~t~~~~----------~~~~A~~~~v~sia~~~~~~~~ 730 (745)
T KOG0301|consen 680 STLLEPVDDLEAIYRLLVALGTLMTVDAS----------VIQLAKNRSVDSIAKKLKEAVS 730 (745)
T ss_pred HhhcccchhHHHHHHHHHHHHhhccccHH----------HHHHHHhcCHHHHHHHHHHhcc
Confidence 65432 22 11234455666666643 4457766667777777777543
No 135
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=71.40 E-value=1e+02 Score=30.93 Aligned_cols=94 Identities=24% Similarity=0.206 Sum_probs=57.7
Q ss_pred HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 016639 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (385)
Q Consensus 175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr 254 (385)
+.-|++=+... ....+...++-.|+.-+.+.+.+..+.+.|..+.+++.+....++. +...+..++..+......+-
T Consensus 23 v~ylld~l~~~--~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~-~~~l~~a~i~~~l~~d~~~~ 99 (361)
T PF07814_consen 23 VEYLLDGLESS--SSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDD-ILALATAAILYVLSRDGLNM 99 (361)
T ss_pred HHHHHhhcccC--CCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchH-HHHHHHHHHHHHHccCCcch
Confidence 44455545522 3445666667777777777666788889999999999997655443 44444444444444444343
Q ss_pred HHHHhCCChHHHHHHHc
Q 016639 255 ESYMELKIDELILEILS 271 (385)
Q Consensus 255 ~~iv~~G~i~~Lv~lL~ 271 (385)
..+-+.+.+..++.+|.
T Consensus 100 ~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 100 HLLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhhchhHHHHHHHHhc
Confidence 33345566666677776
No 136
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=71.13 E-value=73 Score=34.72 Aligned_cols=175 Identities=13% Similarity=0.077 Sum_probs=110.4
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHc----CcHHHHHHHHhcccCCcHhHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN----GGVELVCSICYKMRCGSKRVLDSCL 197 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~----Gaip~Lv~lL~~~~~~d~~vl~~Al 197 (385)
+.|..|.+.+++. +...+..++.+|+.+|.. +..--..-.-. =.+|.+++..++. ++++...|+
T Consensus 128 elLp~L~~~L~s~-------d~n~~EgA~~AL~KIcED--sa~~lds~~~~rpl~~mipkfl~f~~h~---spkiRs~A~ 195 (885)
T KOG2023|consen 128 ELLPQLCELLDSP-------DYNTCEGAFGALQKICED--SAQFLDSDVLTRPLNIMIPKFLQFFKHP---SPKIRSHAV 195 (885)
T ss_pred hHHHHHHHHhcCC-------cccccchhHHHHHHHHhh--hHHHHhhhcccCchHHhHHHHHHHHhCC---ChhHHHHHH
Confidence 5678888888765 555677788888888863 32211110101 2478888888874 788888887
Q ss_pred HHHHHHhcCCccchhHhhC--CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHHHccC
Q 016639 198 KTMALLVHDVQSTETFRTG--GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME--LKIDELILEILSRQ 273 (385)
Q Consensus 198 ~aLa~L~~~~~~~~~i~~~--ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~--~G~i~~Lv~lL~~~ 273 (385)
.++--.+-.+ ++.+... .=++.+..+- +.++++|.+..|+++..+..-.. ..++- .++++-++..-+.+
T Consensus 196 ~cvNq~i~~~--~qal~~~iD~Fle~lFala--nD~~~eVRk~vC~alv~Llevr~---dkl~phl~~IveyML~~tqd~ 268 (885)
T KOG2023|consen 196 GCVNQFIIIQ--TQALYVHIDKFLEILFALA--NDEDPEVRKNVCRALVFLLEVRP---DKLVPHLDNIVEYMLQRTQDV 268 (885)
T ss_pred hhhhheeecC--cHHHHHHHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHHHhcH---HhcccchHHHHHHHHHHccCc
Confidence 7776554432 1333211 1122233222 35789999999999998764333 34442 35667777777777
Q ss_pred ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh--cCcHHHHHHHHhcCC
Q 016639 274 RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLHAGL 325 (385)
Q Consensus 274 ~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e--~Ggi~~Lv~lL~~~~ 325 (385)
+.+|.-+||-...+++..-..+.. +.. ...||.|++-|....
T Consensus 269 dE~VALEACEFwla~aeqpi~~~~----------L~p~l~kliPvLl~~M~Ysd 312 (885)
T KOG2023|consen 269 DENVALEACEFWLALAEQPICKEV----------LQPYLDKLIPVLLSGMVYSD 312 (885)
T ss_pred chhHHHHHHHHHHHHhcCcCcHHH----------HHHHHHHHHHHHHccCcccc
Confidence 778999999999999876644431 222 246788888777643
No 137
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=70.81 E-value=1.2e+02 Score=34.92 Aligned_cols=168 Identities=17% Similarity=0.112 Sum_probs=112.5
Q ss_pred ChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc-hhHhhCCCcHHHHHHHhcCCC-CHHHHHHH
Q 016639 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDGNE-DPEILNSG 239 (385)
Q Consensus 162 ~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~-~~~v~~~a 239 (385)
++=.-.++..-|.+|-++.||++.+. +-+...--+||=- |+.| ++| -+++..+|-...+++|..+.. +++-..-+
T Consensus 501 GpWAV~LaLsVGIFPYVLKLLQS~a~-ELrpiLVFIWAKI-LAvD-~SCQ~dLvKe~g~~YF~~vL~~~~~~~~Eqrtma 577 (1387)
T KOG1517|consen 501 GPWAVDLALSVGIFPYVLKLLQSSAR-ELRPILVFIWAKI-LAVD-PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMA 577 (1387)
T ss_pred chhhhhhhhccchHHHHHHHhccchH-hhhhhHHHHHHHH-HhcC-chhHHHHHhccCceeEEEEecCcCCCCHHHHHHH
Confidence 44444566778999999999998532 2122222223211 2233 444 688999998888888876322 34666677
Q ss_pred HHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH-HHHHHHHhcCCCccchhhhhchhHHHHH-HhcCcHHHH
Q 016639 240 FAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS-LYDAIRVLLTPDDDQVVASQVYGYARRF-AKIGIARAL 317 (385)
Q Consensus 240 ~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~-A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I-~e~Ggi~~L 317 (385)
+.+|+.++.+..--+.+-.+.+.|..-++.|..+.....+. .|-+|.-|=.|-+ -|+-. ++.++-+-|
T Consensus 578 AFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~----------~Arw~G~r~~AhekL 647 (1387)
T KOG1517|consen 578 AFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYD----------EARWSGRRDNAHEKL 647 (1387)
T ss_pred HHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcc----------hhhhccccccHHHHH
Confidence 88888888887777777788999999999998864444554 7777777743332 12222 256777888
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639 318 VHSLHAGLSSPSLISASIALKAVAVN 343 (385)
Q Consensus 318 v~lL~~~~~~~v~~~a~~aL~~La~~ 343 (385)
..+|+.. -++|...+..||..+..+
T Consensus 648 ~~~LsD~-vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 648 ILLLSDP-VPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHhcCc-cHHHHHHHHHHHHHHhcc
Confidence 8888763 567888888888888653
No 138
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=70.60 E-value=1e+02 Score=29.60 Aligned_cols=139 Identities=14% Similarity=0.199 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC----ChHHHH-HHHHHHHHhcCCCccchhhhhchhHHHHH
Q 016639 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ----RNDSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRF 308 (385)
Q Consensus 234 ~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~----~~~v~k-~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I 308 (385)
.-++.++..+.-++ .|++-|..|.++..---|.-.|... .++..+ .+.++|.+|.-+||--| .+.+
T Consensus 94 nRVcnaL~LlQcvA-SHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eV--------i~fL 164 (293)
T KOG3036|consen 94 NRVCNALALLQCVA-SHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEV--------IRFL 164 (293)
T ss_pred chHHHHHHHHHHHh-cCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHH--------HHHH
Confidence 34556666666554 6899999999998766666666443 335444 48999999997777432 4566
Q ss_pred HhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh----HHHHHHHHcCcHHHHHHHHHhc-CCcCcHHHHHHHHHHH
Q 016639 309 AKIGIARALVHSLHAGLSSPSLISASIALKAVAVND----EICKSVAENGGIDALLRCIDDS-GLQGNKTVARICCSLL 382 (385)
Q Consensus 309 ~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~----e~c~~I~e~GGl~~Lv~ll~~~-~~~~~~~v~k~a~~~L 382 (385)
...+++|..+..|..++ +..+.-+..++..+-.++ -+|+...+...+..++.-|-.+ .+.+...+.|....+.
T Consensus 165 l~TeIVPlCLrime~GS-elSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcY 242 (293)
T KOG3036|consen 165 LTTEIVPLCLRIMESGS-ELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCY 242 (293)
T ss_pred HHhhhHHHHHHHHhccc-HHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 78899999999999975 222333444555555443 4777777777777665443321 1233345666655543
No 139
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=70.01 E-value=35 Score=37.65 Aligned_cols=105 Identities=12% Similarity=0.112 Sum_probs=77.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH
Q 016639 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (385)
Q Consensus 230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~ 309 (385)
..++.+...|+++++.+ +..+ +. ...++++.+++.+.+..|.|+|+-+|+.+=.-|. ++..
T Consensus 103 d~N~~iR~~AlR~ls~l--~~~e----l~-~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~------------~l~~ 163 (757)
T COG5096 103 DPNEEIRGFALRTLSLL--RVKE----LL-GNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK------------DLYH 163 (757)
T ss_pred CCCHHHHHHHHHHHHhc--ChHH----HH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH------------hhhh
Confidence 46889999999998743 2222 22 3467899999999888999999999999963222 2345
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc------ChHHHHHHHHcC
Q 016639 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAV------NDEICKSVAENG 354 (385)
Q Consensus 310 e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~------~~e~c~~I~e~G 354 (385)
+.|.+..+..++.. .++.++.+|+.+|..+-- ..++|..|-..+
T Consensus 164 ~~g~~~~l~~l~~D-~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~ 213 (757)
T COG5096 164 ELGLIDILKELVAD-SDPIVIANALASLAEIDPELAHGYSLEVILRIPQLD 213 (757)
T ss_pred cccHHHHHHHHhhC-CCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhcc
Confidence 77888888888877 488899999999887732 246777777655
No 140
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=69.69 E-value=1.1e+02 Score=34.39 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=65.5
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (385)
.+..|+++.... ..+++.-...+|+..+.-++.-.+-.+..-+|..+.+...+++++-+...+--++..++. .+.|
T Consensus 531 ild~L~qlas~~---s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q-~~~~ 606 (1005)
T KOG2274|consen 531 ILDGLLQLASKS---SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ-IAAN 606 (1005)
T ss_pred HHHHHHHHcccc---cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH-HHHh
Confidence 344556655543 567777778899988876654466678888999999998888888777766666665543 2222
Q ss_pred HHHHHhCCChHHHHHHHccCC
Q 016639 254 KESYMELKIDELILEILSRQR 274 (385)
Q Consensus 254 r~~iv~~G~i~~Lv~lL~~~~ 274 (385)
.-=|..-.||.|+.+|....
T Consensus 607 -~g~m~e~~iPslisil~~~~ 626 (1005)
T KOG2274|consen 607 -YGPMQERLIPSLISVLQLNA 626 (1005)
T ss_pred -hcchHHHHHHHHHHHHcCcc
Confidence 22334457888888887654
No 141
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=69.27 E-value=58 Score=35.84 Aligned_cols=192 Identities=11% Similarity=0.044 Sum_probs=116.5
Q ss_pred cHHHHHHHHhcccCCcHhH--HHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 016639 174 GVELVCSICYKMRCGSKRV--LDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN 250 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~v--l~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~ 250 (385)
.++++..++.. |... --.+|.+++||..-+++ ++.+....+++.+-+++.. +++-++++++..+.|+..+.
T Consensus 542 v~~~~~s~~~~----d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~e--e~~~lqraa~e~~~NLl~~~ 615 (748)
T KOG4151|consen 542 VVKPLDSALHN----DEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTE--ENPALQRAALESIINLLWSP 615 (748)
T ss_pred hhhhhcchhhh----hHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhc--ccHHHHHHHHHHHHHHHhhH
Confidence 34555555543 4332 22456788887655544 6778888777776666553 57889999999999998766
Q ss_pred hhhHHHHHh-CCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh-cCcHHHHHHHHhcCCCHH
Q 016639 251 EVVKESYME-LKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIARALVHSLHAGLSSP 328 (385)
Q Consensus 251 e~nr~~iv~-~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e-~Ggi~~Lv~lL~~~~~~~ 328 (385)
.-....|++ ...++.....+.......-.++|+++..++..+.+- +..+.+ ..+...++.++..+ +..
T Consensus 616 ~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~---------c~~~~~~~~~~e~~~~~i~~~-~~~ 685 (748)
T KOG4151|consen 616 LLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENH---------CSRILELLEWLEILVRAIQDE-DDE 685 (748)
T ss_pred HHHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhh---------hhhHHHhhcchHHHHHhhcCc-hhh
Confidence 666666776 456677666665533344445666676676655532 222332 35677888888775 555
Q ss_pred HHHHHHHHHHHhhc-ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHH
Q 016639 329 SLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL 382 (385)
Q Consensus 329 v~~~a~~aL~~La~-~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~L 382 (385)
++........++.. ..+++..|.+..-+..+...-.- .-..-.+.+..|+.++
T Consensus 686 ~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~-~~a~~~~~~~~~l~~a 739 (748)
T KOG4151|consen 686 IQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKL-NRAPKREDAAPCLSAA 739 (748)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHh-hhhhhhhhhhhHHHHH
Confidence 55544444444443 35777777776666666543222 2233345666676654
No 142
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=69.26 E-value=59 Score=37.21 Aligned_cols=187 Identities=13% Similarity=0.037 Sum_probs=120.4
Q ss_pred ChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHH
Q 016639 162 GSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGF 240 (385)
Q Consensus 162 ~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~ 240 (385)
++.+..-+.+.+|+.-.++.|.....-+++...-|.=.|+.++++-.- .....+.+-+..-++.|.+.. .+=+....|
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~ 621 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLC 621 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHH
Confidence 678888888888888777777652222345555566678888876332 356677777887788887642 344566777
Q ss_pred HHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHH---------HHHHhc
Q 016639 241 AVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYA---------RRFAKI 311 (385)
Q Consensus 241 ~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a---------~~I~e~ 311 (385)
-+|..+=...+..|=.=++.++.+.|+.+|+....+|...|.-||..+..+-..+ |-....+. +.-+|.
T Consensus 622 icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~--fde~~~~~~~~~~l~~~~~~~E~ 699 (1387)
T KOG1517|consen 622 ICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDN--FDEQTLVVEEEIDLDDERTSIED 699 (1387)
T ss_pred HHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccc--cchhhhhhhhhhcchhhhhhHHH
Confidence 7888777777777766678899999999999877788887877777765431001 11111111 111233
Q ss_pred CcH---HHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHH
Q 016639 312 GIA---RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE 352 (385)
Q Consensus 312 Ggi---~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e 352 (385)
-.+ -.++.+++.+ .+-+..++.-+|+..+++...--.++.
T Consensus 700 ~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 700 LIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 233 2566666554 455667788889998887655444443
No 143
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=68.35 E-value=1.1e+02 Score=32.31 Aligned_cols=117 Identities=11% Similarity=0.129 Sum_probs=80.2
Q ss_pred HHHHHHHHHhcCCh---hhHHHHHhCCChHHHHHHHccCCh------HHHHH-HHHHHHHhcCCCccchhhhhchhHHHH
Q 016639 238 SGFAVVAASATGNE---VVKESYMELKIDELILEILSRQRN------DSIQS-LYDAIRVLLTPDDDQVVASQVYGYARR 307 (385)
Q Consensus 238 ~a~~~L~~~~~~~e---~nr~~iv~~G~i~~Lv~lL~~~~~------~v~k~-A~~aL~~Lt~~Dd~rv~~g~a~~~a~~ 307 (385)
+|+-.+...+.+.+ .||..+.++=|.+-+-.+|++.+. .|.+. +...|...+.+.+.- +|+ .
T Consensus 30 AaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElA-----sh~---~ 101 (698)
T KOG2611|consen 30 AALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELA-----SHE---E 101 (698)
T ss_pred HHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhc-----cCH---H
Confidence 44455555543322 357788899899999999987543 56665 566666666443321 111 1
Q ss_pred HHhcCcHHHHHHHHhcCCCHH------HHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHH
Q 016639 308 FAKIGIARALVHSLHAGLSSP------SLISASIALKAVAVNDEICKSVAENGGIDALLRCID 364 (385)
Q Consensus 308 I~e~Ggi~~Lv~lL~~~~~~~------v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~ 364 (385)
++ +-||.|.+.|+...+++ ++++.-..|..+|..+.--+.....||+..+-++-.
T Consensus 102 ~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~ 162 (698)
T KOG2611|consen 102 MV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYE 162 (698)
T ss_pred HH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHh
Confidence 22 35899999999876543 778888889999998878888888999999976533
No 144
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.03 E-value=1.7e+02 Score=31.14 Aligned_cols=169 Identities=13% Similarity=0.081 Sum_probs=85.7
Q ss_pred HHHHHHHHhccc-CCcHhHHHHHHHHHHHHhcCCccc----------hhHhhCCCcHHHHHHHhc--CCCCHHHHHHHHH
Q 016639 175 VELVCSICYKMR-CGSKRVLDSCLKTMALLVHDVQST----------ETFRTGGGPKLLVNILID--GNEDPEILNSGFA 241 (385)
Q Consensus 175 ip~Lv~lL~~~~-~~d~~vl~~Al~aLa~L~~~~~~~----------~~i~~~ggi~~Lv~lL~~--~~~~~~v~~~a~~ 241 (385)
+..+..+++... .+++.+...|+-+++.|....... ...+-..-++.+...|.. ...+.+-....++
T Consensus 433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 512 (618)
T PF01347_consen 433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK 512 (618)
T ss_dssp HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence 455666665321 134567777888888887532111 112223456677776662 1234455556678
Q ss_pred HHHHHhcCChhhHHHHHhCCChHHHHHHHccC---ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHH
Q 016639 242 VVAASATGNEVVKESYMELKIDELILEILSRQ---RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALV 318 (385)
Q Consensus 242 ~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~---~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv 318 (385)
+|.|+ |++. .++.|...+... ...++..|.++|+.++..... . +.+.|.
T Consensus 513 aLgN~--g~~~---------~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-------------~----v~~~l~ 564 (618)
T PF01347_consen 513 ALGNL--GHPE---------SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-------------K----VREILL 564 (618)
T ss_dssp HHHHH--T-GG---------GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-------------H----HHHHHH
T ss_pred Hhhcc--CCch---------hhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-------------H----HHHHHH
Confidence 88775 4542 555666666555 236777899999977532211 1 236677
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 319 HSLHAGL-SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 319 ~lL~~~~-~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
.++.... +.+++..|+.+|-..--....-+ .|...+.. +.|..|..-..+.||
T Consensus 565 ~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~---------~i~~~l~~---E~~~QV~sfv~S~Lk 618 (618)
T PF01347_consen 565 PIFMNTTEDPEVRIAAYLILMRCNPSPSVLQ---------RIAQSLWN---EPSNQVASFVYSHLK 618 (618)
T ss_dssp HHHH-TTS-HHHHHHHHHHHHHT---HHHHH---------HHHHHHTT----S-HHHHHHHHHHHH
T ss_pred HHhcCCCCChhHHHHHHHHHHhcCCCHHHHH---------HHHHHHhh---CchHHHHHHHHHhcC
Confidence 7777755 56666666555533211112222 23345543 445567666666554
No 145
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=66.80 E-value=25 Score=27.00 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcC
Q 016639 144 NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHD 206 (385)
Q Consensus 144 ~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~ 206 (385)
.+++.++|++...+.. +.-...+-+.+.++.++++.... +...+.-.|+-+|+-+..-
T Consensus 2 ~~lKaaLWaighIgss---~~G~~lL~~~~iv~~iv~~a~~s--~v~siRGT~fy~Lglis~T 59 (73)
T PF14668_consen 2 LELKAALWAIGHIGSS---PLGIQLLDESDIVEDIVKIAENS--PVLSIRGTCFYVLGLISST 59 (73)
T ss_pred hHHHHHHHHHHhHhcC---hHHHHHHhhcCHHHHHHHHHHhC--CccchHHHHHHHHHHHhCC
Confidence 3688999999999985 55566666789999999998874 4567888888888877653
No 146
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.74 E-value=1.9e+02 Score=31.07 Aligned_cols=148 Identities=10% Similarity=0.014 Sum_probs=83.1
Q ss_pred CcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHH-HHHHHhcCCccchhHhhCC
Q 016639 139 SDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLK-TMALLVHDVQSTETFRTGG 217 (385)
Q Consensus 139 ~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~-aLa~L~~~~~~~~~i~~~g 217 (385)
..++++-+..|+.=+.+--+- +.+-.+..-.|....++.++......+......-.+ -|..+..-....++ ++.|
T Consensus 260 ~ss~~~iq~~al~Wi~efV~i---~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~ 335 (675)
T KOG0212|consen 260 QSSEPEIQLKALTWIQEFVKI---PGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYG 335 (675)
T ss_pred cCCcHHHHHHHHHHHHHHhcC---CCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchH
Confidence 334455555666666666654 333333344455556666655421101111111111 12222221101112 3333
Q ss_pred C-cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCc
Q 016639 218 G-PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293 (385)
Q Consensus 218 g-i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd 293 (385)
. ++.+-+.|.+ +..+..-+++.|+..+-.+++ ++-........+.|+..|...+++|+.-+...+.+++.+..
T Consensus 336 ~ii~vl~~~l~~--~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~ 409 (675)
T KOG0212|consen 336 SIIEVLTKYLSD--DREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSN 409 (675)
T ss_pred HHHHHHHHHhhc--chHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcc
Confidence 2 4444455554 455666788999998876665 55556677899999999999998999999999999986443
No 147
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=66.63 E-value=1.5e+02 Score=33.53 Aligned_cols=159 Identities=12% Similarity=0.069 Sum_probs=92.6
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
..|+.|.+..... +.+.+.-..+.|+..|+- +|+ -....++-.+|.++.+..+.+ +|+.+...+.-.+-
T Consensus 530 ~ild~L~qlas~~-------s~evl~llmE~Ls~vv~~--dpe-f~as~~skI~P~~i~lF~k~s-~DP~V~~~~qd~f~ 598 (1005)
T KOG2274|consen 530 MILDGLLQLASKS-------SDEVLVLLMEALSSVVKL--DPE-FAASMESKICPLTINLFLKYS-EDPQVASLAQDLFE 598 (1005)
T ss_pred HHHHHHHHHcccc-------cHHHHHHHHHHHHHHhcc--Chh-hhhhhhcchhHHHHHHHHHhc-CCchHHHHHHHHHH
Confidence 3566676666543 556777777889999997 666 445566778888888766554 57766555544444
Q ss_pred HHhcCCccchhHhhCCCcHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHcc-CChHHH
Q 016639 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNE--DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-QRNDSI 278 (385)
Q Consensus 202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~--~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~-~~~~v~ 278 (385)
.|+... .+.-=+...-||.++.+|..+.+ ......-++-+|.-+..+.+.---...-.-+.|++..+.-+ ++++..
T Consensus 599 el~q~~-~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tl 677 (1005)
T KOG2274|consen 599 ELLQIA-ANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETL 677 (1005)
T ss_pred HHHHHH-HhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHH
Confidence 444311 01111223458888888876431 12333344444432222222211112224577888888633 344899
Q ss_pred HHHHHHHHHhcCCC
Q 016639 279 QSLYDAIRVLLTPD 292 (385)
Q Consensus 279 k~A~~aL~~Lt~~D 292 (385)
+++--+||.+...+
T Consensus 678 Q~~~EcLra~Is~~ 691 (1005)
T KOG2274|consen 678 QNATECLRALISVT 691 (1005)
T ss_pred HhHHHHHHHHHhcC
Confidence 99999999986543
No 148
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.47 E-value=96 Score=35.81 Aligned_cols=220 Identities=18% Similarity=0.226 Sum_probs=128.7
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCc----HhHHHHH-
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGS----KRVLDSC- 196 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d----~~vl~~A- 196 (385)
+|+..|....-..+ +.+...+.+..+-.+-.. +++|..+.-+.--+|.+|.-+......- -++++.|
T Consensus 466 eAvqmLqdiFLkae------nkdlqaeVlnrmfkIfts--hpeNYricqelytvpllvlnmegfPsslqvkiLkilEyAV 537 (2799)
T KOG1788|consen 466 EAVQMLQDIFLKAE------NKDLQAEVLNRMFKIFTS--HPENYRICQELYTVPLLVLNMEGFPSSLQVKILKILEYAV 537 (2799)
T ss_pred HHHHHHHHHHHHhc------CcchhhHHHHHHHHHhcc--ChHHhhHHhhccccchhhhhhcCCChHHHHHHHHHHHHHH
Confidence 67777777543321 667888889999888887 8888887777666666654443221000 0111111
Q ss_pred --------------------------HHHHHH-----HhcCCccchhHhhCCCcHHHHHHHhcCC---------------
Q 016639 197 --------------------------LKTMAL-----LVHDVQSTETFRTGGGPKLLVNILIDGN--------------- 230 (385)
Q Consensus 197 --------------------------l~aLa~-----L~~~~~~~~~i~~~ggi~~Lv~lL~~~~--------------- 230 (385)
+.++-. ++.++..+..+.+-|.++.|...|+.|.
T Consensus 538 tvvncvPeqELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpdqysgvsehy 617 (2799)
T KOG1788|consen 538 TVVNCVPEQELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPDQYSGVSEHY 617 (2799)
T ss_pred hhhccCcHHHHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcchhhhHHHHh
Confidence 111111 1122222344456677788777776521
Q ss_pred ----CC----------------HH-------------H---HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC
Q 016639 231 ----ED----------------PE-------------I---LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR 274 (385)
Q Consensus 231 ----~~----------------~~-------------v---~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~ 274 (385)
.+ +. + ..-+.-+|..+..++++|...+.+++|...|+..+-+.
T Consensus 618 drnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvklilpflind- 696 (2799)
T KOG1788|consen 618 DRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVKLILPFLIND- 696 (2799)
T ss_pred hcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCceEEEEeeech-
Confidence 01 00 0 11234455566678888988888998888888877432
Q ss_pred hHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-C----------HHHHHHHHHHHHHhhcC
Q 016639 275 NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-S----------SPSLISASIALKAVAVN 343 (385)
Q Consensus 275 ~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~----------~~v~~~a~~aL~~La~~ 343 (385)
+-.......+..|...|.-++ .+.-+-++|+.|+++. . -..++...+++++...-
T Consensus 697 -ehRSslLrivscLitvdpkqv-------------hhqelmalVdtLksgmvt~IsgeqyklhfsllcdlmGalwrivgv 762 (2799)
T KOG1788|consen 697 -EHRSSLLRIVSCLITVDPKQV-------------HHQELMALVDTLKSGMVTRISGEQYKLHFSLLCDLMGALWRIVGV 762 (2799)
T ss_pred -HHHHHHHHHHHHHhccCcccc-------------cHHHHHHHHHHHHhcceeccchhHHHHHHHHHHHHHHHHHHHHcc
Confidence 223334555566655554333 2233567778887742 1 13566777778777644
Q ss_pred h-HHHHHHHHcCcHHHHHHHHH
Q 016639 344 D-EICKSVAENGGIDALLRCID 364 (385)
Q Consensus 344 ~-e~c~~I~e~GGl~~Lv~ll~ 364 (385)
| .....+.++||.-.|...|-
T Consensus 763 ngsaqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 763 NGSAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred CchheeehhccccHHHHHHHHH
Confidence 4 66788999999999887764
No 149
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=64.66 E-value=29 Score=38.28 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=73.7
Q ss_pred HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 016639 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (385)
Q Consensus 175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr 254 (385)
++.+..=+++ .++.+..-|+++|+.|=. +. +-...++.+.+++.+ .++-|.+.|+-++..+= .-.+
T Consensus 94 vNti~kDl~d---~N~~iR~~AlR~ls~l~~-----~e-l~~~~~~~ik~~l~d--~~ayVRk~Aalav~kly---~ld~ 159 (757)
T COG5096 94 VNTIQKDLQD---PNEEIRGFALRTLSLLRV-----KE-LLGNIIDPIKKLLTD--PHAYVRKTAALAVAKLY---RLDK 159 (757)
T ss_pred HHHHHhhccC---CCHHHHHHHHHHHHhcCh-----HH-HHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHH---hcCH
Confidence 4444444444 578899999999996522 12 223346677777765 46788888888888764 2345
Q ss_pred HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcC
Q 016639 255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT 290 (385)
Q Consensus 255 ~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~ 290 (385)
..+.++|.+..+..++...++.|+.+|..+|..+--
T Consensus 160 ~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 160 DLYHELGLIDILKELVADSDPIVIANALASLAEIDP 195 (757)
T ss_pred hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence 677788999999999988888899999988888753
No 150
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.53 E-value=2.3e+02 Score=31.29 Aligned_cols=124 Identities=13% Similarity=0.089 Sum_probs=69.0
Q ss_pred HHHHHH----hhHHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCC------------CCchHH-HHHHHHHHHh
Q 016639 69 FDEVVK----ENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSL------------KDNPLI-QSLERLKQLD 131 (385)
Q Consensus 69 fd~~v~----eni~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~------------~~~~v~-~al~~L~~~l 131 (385)
|-+||+ +|++.=.|-.-+...=|-.++..++.-..-+++|...+... ....+. -..+.|+..+
T Consensus 51 F~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l 130 (734)
T KOG1061|consen 51 FPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCL 130 (734)
T ss_pred hHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhc
Confidence 445554 23444445555555555555555554444555554433111 001111 2334444444
Q ss_pred hcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCC
Q 016639 132 LNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV 207 (385)
Q Consensus 132 ~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~ 207 (385)
... +......+.-....+ ..-+.......|.++.|-+++.. .++.+.++|+.+|..+..-.
T Consensus 131 ~d~-------~~yvRktaa~~vakl-----~~~~~~~~~~~gl~~~L~~ll~D---~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 131 KDD-------DPYVRKTAAVCVAKL-----FDIDPDLVEDSGLVDALKDLLSD---SNPMVVANALAALSEIHESH 191 (734)
T ss_pred cCC-------ChhHHHHHHHHHHHh-----hcCChhhccccchhHHHHHHhcC---CCchHHHHHHHHHHHHHHhC
Confidence 332 444444444444444 23345566778999999999984 58899999999999987554
No 151
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=64.11 E-value=2.1e+02 Score=30.69 Aligned_cols=108 Identities=10% Similarity=0.047 Sum_probs=58.2
Q ss_pred HHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 016639 167 AVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAAS 246 (385)
Q Consensus 167 ~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~ 246 (385)
...--...+|.|.+.|... ++++...+..+|..++.--++ ++|.- -+|.|++.|.+.. .-...+...|..-
T Consensus 289 Ls~~lp~iiP~lsevl~DT---~~evr~a~~~~l~~~~svidN-~dI~~--~ip~Lld~l~dp~---~~~~e~~~~L~~t 359 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDT---KPEVRKAGIETLLKFGSVIDN-PDIQK--IIPTLLDALADPS---CYTPECLDSLGAT 359 (569)
T ss_pred HHHHHhHhhHHHHHHHccC---CHHHHHHHHHHHHHHHHhhcc-HHHHH--HHHHHHHHhcCcc---cchHHHHHhhcce
Confidence 3334457899999988763 788888887777776532211 22211 1344444444321 0122222333221
Q ss_pred hcCChhhHHHHHhCCChHHHHHHHccCC----hHHHHHHHHHHHHhc
Q 016639 247 ATGNEVVKESYMELKIDELILEILSRQR----NDSIQSLYDAIRVLL 289 (385)
Q Consensus 247 ~~~~e~nr~~iv~~G~i~~Lv~lL~~~~----~~v~k~A~~aL~~Lt 289 (385)
..-+ .+++-.+..++-+|+++. ....+.++..+-||+
T Consensus 360 tFV~------~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~ 400 (569)
T KOG1242|consen 360 TFVA------EVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMC 400 (569)
T ss_pred eeee------eecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHH
Confidence 1111 234455666666666643 366677888888887
No 152
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=61.55 E-value=89 Score=33.87 Aligned_cols=141 Identities=15% Similarity=0.128 Sum_probs=76.2
Q ss_pred HHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc---chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639 177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS---TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (385)
Q Consensus 177 ~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~---~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (385)
.++.+|++ ..+.+...|+..+++|+.--.. +..+...| -.|.+-|. .+.++++-.-+.++..+...+.-.
T Consensus 608 tiL~~L~~---k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lg--e~ypEvLgsil~Ai~~I~sv~~~~ 680 (975)
T COG5181 608 TILKLLRS---KPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLG--EDYPEVLGSILKAICSIYSVHRFR 680 (975)
T ss_pred HHHHHhcC---CCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcC--cccHHHHHHHHHHHHHHhhhhccc
Confidence 34445554 3556666677777766421000 01111111 11222222 356788777777776655444322
Q ss_pred HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHH
Q 016639 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333 (385)
Q Consensus 254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a 333 (385)
+..=--.|++|.|.-+|++....++.+....+--++.+....+. .+.+.+ +-=-|+++|++. ++++..++
T Consensus 681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~-------~rEWMR--IcfeLvd~Lks~-nKeiRR~A 750 (975)
T COG5181 681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIG-------VREWMR--ICFELVDSLKSW-NKEIRRNA 750 (975)
T ss_pred ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCC-------HHHHHH--HHHHHHHHHHHh-hHHHHHhh
Confidence 11111258999999999998778888888888888765443332 333332 123466666664 55454444
Q ss_pred H
Q 016639 334 S 334 (385)
Q Consensus 334 ~ 334 (385)
-
T Consensus 751 ~ 751 (975)
T COG5181 751 T 751 (975)
T ss_pred h
Confidence 3
No 153
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.17 E-value=80 Score=36.42 Aligned_cols=206 Identities=17% Similarity=0.158 Sum_probs=126.0
Q ss_pred HHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcC
Q 016639 150 FDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG 229 (385)
Q Consensus 150 l~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~ 229 (385)
-.+|..+.|+ +.+|...+.++.|+..++..+-+ .+-....++-+..|++-+ +.-++.+-+-.++++|+++
T Consensus 663 wDcLisllKn--nteNqklFreanGvklilpflin-----dehRSslLrivscLitvd---pkqvhhqelmalVdtLksg 732 (2799)
T KOG1788|consen 663 WDCLISLLKN--NTENQKLFREANGVKLILPFLIN-----DEHRSSLLRIVSCLITVD---PKQVHHQELMALVDTLKSG 732 (2799)
T ss_pred HHHHHHHHhc--cchhhHHHHhhcCceEEEEeeec-----hHHHHHHHHHHHHHhccC---cccccHHHHHHHHHHHHhc
Confidence 5678888897 99999999999999988887732 233444567777766543 2334445566777777763
Q ss_pred C------CC----HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC---h-----------HHHHHHHHHH
Q 016639 230 N------ED----PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR---N-----------DSIQSLYDAI 285 (385)
Q Consensus 230 ~------~~----~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~---~-----------~v~k~A~~aL 285 (385)
- ++ -.+.+....+++.+.-.|...+..+-++||...|...|-... + +..+-....+
T Consensus 733 mvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlf 812 (2799)
T KOG1788|consen 733 MVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLF 812 (2799)
T ss_pred ceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHH
Confidence 1 11 235677777888876566666677778999888887764311 1 1111111000
Q ss_pred H-HhcCCCccch--------------------------------------------------------------------
Q 016639 286 R-VLLTPDDDQV-------------------------------------------------------------------- 296 (385)
Q Consensus 286 ~-~Lt~~Dd~rv-------------------------------------------------------------------- 296 (385)
. +++.+--+|.
T Consensus 813 TlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavnt 892 (2799)
T KOG1788|consen 813 TLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNT 892 (2799)
T ss_pred HHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeecc
Confidence 0 0111111221
Q ss_pred hhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChH-HHHHHHHcCcHHHHHHHHHhc
Q 016639 297 VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE-ICKSVAENGGIDALLRCIDDS 366 (385)
Q Consensus 297 ~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e-~c~~I~e~GGl~~Lv~ll~~~ 366 (385)
|.|.-.-....|..+|++..|++.+-.+ .+.++-+-+..|..++.-++ +..-....|.++.+++++--+
T Consensus 893 PsGqfnpdk~~iynagavRvlirslLln-ypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypf 962 (2799)
T KOG1788|consen 893 PSGQFNPDKQKIYNAGAVRVLIRSLLLN-YPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPF 962 (2799)
T ss_pred CCCCcCchHhhhcccchhHHHHHHHHhh-ChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhh
Confidence 1111112334566788888888877664 35577777788888887554 445555669999988877543
No 154
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=60.93 E-value=54 Score=37.72 Aligned_cols=114 Identities=13% Similarity=0.053 Sum_probs=76.2
Q ss_pred cHHHHHHHHhccc-CCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639 174 GVELVCSICYKMR-CGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (385)
Q Consensus 174 aip~Lv~lL~~~~-~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (385)
..|.+++.|+... .+++.++..|.-+|+-++.=. .=.-.-.+|.++.+|... +++-|.+.+...++..+..-+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS----a~fces~l~llftimeks-p~p~IRsN~VvalgDlav~fpn 994 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS----AEFCESHLPLLFTIMEKS-PSPRIRSNLVVALGDLAVRFPN 994 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh----HHHHHHHHHHHHHHHhcC-CCceeeecchheccchhhhccc
Confidence 5788888886433 257889999999998876532 122345678999999853 4566666555555555443332
Q ss_pred hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchh
Q 016639 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVV 297 (385)
Q Consensus 253 nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~ 297 (385)
-... .-+.|..-|+..+..|++.|.-+|..|-++|-+||-
T Consensus 995 lie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVK 1034 (1251)
T KOG0414|consen 995 LIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVK 1034 (1251)
T ss_pred ccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhc
Confidence 2111 223455566666668999999999999999988874
No 155
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.87 E-value=1.9e+02 Score=31.90 Aligned_cols=151 Identities=13% Similarity=0.136 Sum_probs=80.8
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhh------------------HHHHH-------------
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVN------------------AAVAT------------- 170 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~------------------r~~~~------------- 170 (385)
.+..+|++-++.. |+..+..|+..+++++++ +|.| |.+|.
T Consensus 181 ~~FprL~EkLeDp-------Dp~V~SAAV~VICELArK--nPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP 251 (877)
T KOG1059|consen 181 PCFPRLVEKLEDP-------DPSVVSAAVSVICELARK--NPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP 251 (877)
T ss_pred hhHHHHHHhccCC-------CchHHHHHHHHHHHHHhh--CCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCc
Confidence 6788888887654 899999999999999998 6654 33321
Q ss_pred --HcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHH--hcCCccchhHhhCCCcHHHHHHHhcC--CCCHHHHHHHHHHHH
Q 016639 171 --KNGGVELVCSICYKMRCGSKRVLDSCLKTMALL--VHDVQSTETFRTGGGPKLLVNILIDG--NEDPEILNSGFAVVA 244 (385)
Q Consensus 171 --~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L--~~~~~~~~~i~~~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~ 244 (385)
..-.+|+|..++.+. ...+++-.|.+++-+. +.|-.+.. ..+.+-++=|+.. .+++.+.-.+|-+++
T Consensus 252 RLgKKLieplt~li~sT--~AmSLlYECvNTVVa~s~s~g~~d~~-----asiqLCvqKLr~fiedsDqNLKYlgLlam~ 324 (877)
T KOG1059|consen 252 RLGKKLIEPITELMEST--VAMSLLYECVNTVVAVSMSSGMSDHS-----ASIQLCVQKLRIFIEDSDQNLKYLGLLAMS 324 (877)
T ss_pred hhhhhhhhHHHHHHHhh--HHHHHHHHHHHHheeehhccCCCCcH-----HHHHHHHHHHhhhhhcCCccHHHHHHHHHH
Confidence 011244455555443 1234455555544321 22210000 0122222222211 235556666666666
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCc
Q 016639 245 ASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293 (385)
Q Consensus 245 ~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd 293 (385)
.++..|+.--++. -+.++.+|...+..+.-.|...|-.+..-|.
T Consensus 325 KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gmVskkN 368 (877)
T KOG1059|consen 325 KILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGMVSKKN 368 (877)
T ss_pred HHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHHhhhhh
Confidence 6666665433322 2456666666555566666666666654433
No 156
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=60.30 E-value=1.7e+02 Score=28.37 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=78.9
Q ss_pred CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (385)
Q Consensus 173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (385)
-++|.|..+|.. .++.+...|..+|+.+-. ..+++.++.+|.. ..+..+...+.++|..+ +.+.
T Consensus 74 ~av~~l~~~l~d---~~~~vr~~a~~aLg~~~~----------~~a~~~li~~l~~-d~~~~vR~~aa~aL~~~--~~~~ 137 (335)
T COG1413 74 EAVPLLRELLSD---EDPRVRDAAADALGELGD----------PEAVPPLVELLEN-DENEGVRAAAARALGKL--GDER 137 (335)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHc-CCcHhHHHHHHHHHHhc--Cchh
Confidence 368888898887 467788888887775422 3467889999986 35777888888888764 3332
Q ss_pred hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHH
Q 016639 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (385)
Q Consensus 253 nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~ 332 (385)
.+.+++..+......+ +.... .....+.|.. +..-.-.+...-.++++...+... +..++..
T Consensus 138 ---------a~~~l~~~l~~~~~~~---a~~~~--~~~~~~~r~~---a~~~l~~~~~~~~~~~l~~~l~~~-~~~vr~~ 199 (335)
T COG1413 138 ---------ALDPLLEALQDEDSGS---AAAAL--DAALLDVRAA---AAEALGELGDPEAIPLLIELLEDE-DADVRRA 199 (335)
T ss_pred ---------hhHHHHHHhccchhhh---hhhhc--cchHHHHHHH---HHHHHHHcCChhhhHHHHHHHhCc-hHHHHHH
Confidence 3778888887755322 11111 0000011110 000000011223567777777664 4456666
Q ss_pred HHHHHHHhhcCh
Q 016639 333 ASIALKAVAVND 344 (385)
Q Consensus 333 a~~aL~~La~~~ 344 (385)
+..+|..+...+
T Consensus 200 Aa~aL~~~~~~~ 211 (335)
T COG1413 200 AASALGQLGSEN 211 (335)
T ss_pred HHHHHHHhhcch
Confidence 666676665543
No 157
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=59.75 E-value=2.3e+02 Score=29.95 Aligned_cols=142 Identities=11% Similarity=0.090 Sum_probs=95.0
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCC-ChhhHHHHHHcCcHHHHHHHHhcccCC----cHhHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNE-GSVNAAVATKNGGVELVCSICYKMRCG----SKRVLDSC 196 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~-~~~~r~~~~~~Gaip~Lv~lL~~~~~~----d~~vl~~A 196 (385)
.+++++....... +.++.-.+|--....||+.+ +..+|..+-++=|.+-+=.||.+.... |.-.+.-+
T Consensus 11 ~a~~~~~~L~~~k-------~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~ 83 (698)
T KOG2611|consen 11 PALDDCLKLLKGK-------RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQIS 83 (698)
T ss_pred cchhhHHHHhccc-------ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHH
Confidence 3455555554433 55677788888999999722 234677777887888888888764321 12234445
Q ss_pred HHHHHHHhcCCcc--chhHhhCCCcHHHHHHHhcCCC-----CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHH
Q 016639 197 LKTMALLVHDVQS--TETFRTGGGPKLLVNILIDGNE-----DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEI 269 (385)
Q Consensus 197 l~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~~~~~-----~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~l 269 (385)
+..|+..|...+- -++++ ..||.+.+++..+.+ +-.++..+..+|..++ ++|.-.+.++..|+++.+-++
T Consensus 84 itvLacFC~~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va-~~e~G~~~Lia~G~~~~~~Q~ 160 (698)
T KOG2611|consen 84 ITVLACFCRVPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVA-TAEAGLMTLIASGGLRVIAQM 160 (698)
T ss_pred HHHHHHHhCChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHh-cCCchhHHHHhcCchHHHHHH
Confidence 6667766665432 13333 469999999986532 2236888889998876 578888999999999998866
Q ss_pred HccC
Q 016639 270 LSRQ 273 (385)
Q Consensus 270 L~~~ 273 (385)
-.-+
T Consensus 161 y~~~ 164 (698)
T KOG2611|consen 161 YELP 164 (698)
T ss_pred HhCC
Confidence 4443
No 158
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=56.54 E-value=14 Score=27.30 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=17.3
Q ss_pred hhHHhcCCChhHHHHHHHHH
Q 016639 75 ENMEDLGMEPTEALQDAIQT 94 (385)
Q Consensus 75 eni~~f~m~~~eAl~~aI~q 94 (385)
.-+-|+.|+|+||++-.+.|
T Consensus 26 a~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 26 AMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHhCCCHHHHHHHHHhc
Confidence 34778999999999999976
No 159
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.32 E-value=2.3e+02 Score=31.35 Aligned_cols=112 Identities=12% Similarity=0.118 Sum_probs=63.4
Q ss_pred cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (385)
Q Consensus 189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~ 268 (385)
++-...-||++++|+- +.+.+..+. . -+-++|.+++...-+...++-++..+-.++++- +-..+-...++.
T Consensus 124 n~~fv~LAL~~I~niG-~re~~ea~~--~---DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W~~riv~ 194 (938)
T KOG1077|consen 124 NPTFVCLALHCIANIG-SREMAEAFA--D---DIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEWAQRIVH 194 (938)
T ss_pred CcHHHHHHHHHHHhhc-cHhHHHHhh--h---hhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhHHHHHHH
Confidence 5566777888888863 222212221 1 123777777666666555555555565555542 223356678888
Q ss_pred HHccCChHHHHHHHHHHHHhc--CCCccchhhhhchhHHHHHH
Q 016639 269 ILSRQRNDSIQSLYDAIRVLL--TPDDDQVVASQVYGYARRFA 309 (385)
Q Consensus 269 lL~~~~~~v~k~A~~aL~~Lt--~~Dd~rv~~g~a~~~a~~I~ 309 (385)
+|...+..|.-.+...|-.|+ .+++.+...+.+-....+|+
T Consensus 195 LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv 237 (938)
T KOG1077|consen 195 LLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIV 237 (938)
T ss_pred HhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHH
Confidence 887766667777777777776 33444443344444444555
No 160
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=55.69 E-value=3e+02 Score=31.01 Aligned_cols=169 Identities=11% Similarity=0.075 Sum_probs=89.8
Q ss_pred ChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCC
Q 016639 83 EPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEG 162 (385)
Q Consensus 83 ~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~ 162 (385)
+..||++..++-++.++.+.+... . ..+..+.+.... +.+......++..|..+|++ .
T Consensus 269 ~R~Eale~l~~~l~e~~~~~~~~~--------~------~ll~~~~ki~~k------DaN~~v~~~aa~~l~~ia~~--l 326 (815)
T KOG1820|consen 269 DRKEALEELVAILEEAKKEIVKGY--------T------GLLGILLKIRLK------DANINVVMLAAQILELIAKK--L 326 (815)
T ss_pred HHHHHHHHHHHHHhccccccccCc--------c------hHHHHHHHHhcc------CcchhHHHHHHHHHHHHHHh--c
Confidence 467888888888888872221111 1 112223333222 12667888899999999986 3
Q ss_pred hhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHH
Q 016639 163 SVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAV 242 (385)
Q Consensus 163 ~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~ 242 (385)
... ..-...+..|.|+.-+......-.+.+..|+.+..+ .. .-...++.+...|++. ++.+...+..+
T Consensus 327 r~~-~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n---s~------~l~~~~~~I~e~lk~k--np~~k~~~~~~ 394 (815)
T KOG1820|consen 327 RPL-FRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILN---ST------PLSKMSEAILEALKGK--NPQIKGECLLL 394 (815)
T ss_pred chh-hHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh---cc------cHHHHHHHHHHHhcCC--ChhhHHHHHHH
Confidence 332 222334678888888875311122345555555554 11 1123456677777753 56666665555
Q ss_pred HHHHhcCChhhHHHHHhCC----ChHHHHHHHccCChHHHHHHHHHHHHh
Q 016639 243 VAASATGNEVVKESYMELK----IDELILEILSRQRNDSIQSLYDAIRVL 288 (385)
Q Consensus 243 L~~~~~~~e~nr~~iv~~G----~i~~Lv~lL~~~~~~v~k~A~~aL~~L 288 (385)
+.....+.+. ..+.-+ .++.++........+|.+.|..++..+
T Consensus 395 l~r~~~~~~~---~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 395 LDRKLRKLGP---KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred HHHHHhhcCC---cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 5544433331 222223 344444443333337777777666655
No 161
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=55.42 E-value=50 Score=30.20 Aligned_cols=108 Identities=8% Similarity=-0.073 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhch-h----HHHHHH-hcCcHHHHHHHHhcCC----C-HHHHHHHHHHHHHhhcCh
Q 016639 276 DSIQSLYDAIRVLLTPDDDQVVASQVY-G----YARRFA-KIGIARALVHSLHAGL----S-SPSLISASIALKAVAVND 344 (385)
Q Consensus 276 ~v~k~A~~aL~~Lt~~Dd~rv~~g~a~-~----~a~~I~-e~Ggi~~Lv~lL~~~~----~-~~v~~~a~~aL~~La~~~ 344 (385)
.....+|..|+|||..+.....+-... + ..+... +...+..|+++...+. + ..-...+...|.|++.-+
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~ 89 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLP 89 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCH
Confidence 345568999999987665432111100 0 001111 2236788888887722 2 244678888999999999
Q ss_pred HHHHHHHHcCcHH-HHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 345 EICKSVAENGGID-ALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 345 e~c~~I~e~GGl~-~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+.++-+.+-.-.. +|-.++ .+.++.+..-=+-+.+.|||
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl-~ft~~~s~iRR~Gva~~IrN 129 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLL-PFTEHKSVIRRGGVAGTIRN 129 (192)
T ss_pred HHHHHHhCchhhhhHHHHHH-HHhccCcHHHHHHHHHHHHH
Confidence 9999888765322 333332 23344443444555666666
No 162
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=55.08 E-value=23 Score=23.03 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHHHH
Q 016639 63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSL 97 (385)
Q Consensus 63 ~isqetfd~~v~eni~~f~m~~~eAl~~aI~qfe~ 97 (385)
+++.++ .+.+++-....+|+..+.++.||.+|-.
T Consensus 5 ~l~~~~-~~~l~~~a~~~g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 5 RLPDEL-YERLDELAKELGRSRSELIREAIREYLE 38 (39)
T ss_dssp EEEHHH-HHHHHHHHHHHTSSHHHHHHHHHHHHHH
T ss_pred EeCHHH-HHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 356666 5667888889999999999999999843
No 163
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.11 E-value=4.2e+02 Score=30.86 Aligned_cols=140 Identities=10% Similarity=0.027 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCh-hhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCC----
Q 016639 143 LNEMMGLFDKLIELCGGNEGS-VNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGG---- 217 (385)
Q Consensus 143 ~~~~~~al~~L~~lc~~~~~~-~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~g---- 217 (385)
.......+.+|..+-+. .+ ++..++.+ .||-++=+++. .+......|+.+|-.|+.- +.+.+.|
T Consensus 711 ~~~~~~rl~~L~~L~~~--~~~e~~~~i~k--~I~EvIL~~Ke---~n~~aR~~Af~lL~~i~~i----~~~~d~g~e~~ 779 (1176)
T KOG1248|consen 711 SPAQASRLKCLKRLLKL--LSAEHCDLIPK--LIPEVILSLKE---VNVKARRNAFALLVFIGAI----QSSLDDGNEPA 779 (1176)
T ss_pred hHHHHHHHHHHHHHHHh--ccHHHHHHHHH--HHHHHHHhccc---ccHHHHhhHHHHHHHHHHH----Hhhhcccccch
Confidence 34566677777777765 44 33333222 23333333333 3555555555555555421 1222222
Q ss_pred --CcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCc
Q 016639 218 --GPKLLVNILIDGN--EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDD 293 (385)
Q Consensus 218 --gi~~Lv~lL~~~~--~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd 293 (385)
.+...+.++..+. +..-+.+..+-++.++.......-....=.+++..+...|.+.+.++++.|.+.+..++....
T Consensus 780 ~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p 859 (1176)
T KOG1248|consen 780 SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP 859 (1176)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC
Confidence 3444555554431 222222222444444432111111111112456666677777888999999999999975444
No 164
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=51.76 E-value=3.5e+02 Score=29.35 Aligned_cols=173 Identities=14% Similarity=0.127 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCc-HHHHH-HHHhcccCCcHhHHHHHHHHHHH-HhcCCccchhHhhCCC
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGG-VELVC-SICYKMRCGSKRVLDSCLKTMAL-LVHDVQSTETFRTGGG 218 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Ga-ip~Lv-~lL~~~~~~d~~vl~~Al~aLa~-L~~~~~~~~~i~~~gg 218 (385)
.....++++..+.+.|.+ .+| ..++...++ +-.+| ..++.. .+..+...||++|.. +..-+ ..+-..+-
T Consensus 147 p~~~k~~sl~~~gy~ces-~~P--e~li~~sN~il~aiv~ga~k~e--t~~avRLaaL~aL~dsl~fv~---~nf~~E~e 218 (858)
T COG5215 147 PVSGKCESLGICGYHCES-EAP--EDLIQMSNVILFAIVMGALKNE--TTSAVRLAALKALMDSLMFVQ---GNFCYEEE 218 (858)
T ss_pred chHhHHHHHHHHHHHhhc-cCH--HHHHHHhhHHHHHHHHhhcccC--chHHHHHHHHHHHHHHHHHHH---Hhhcchhh
Confidence 445678899999999986 444 333333332 22233 344443 467788888888886 22111 11112222
Q ss_pred cHHHHHHHh--cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcC--CCc-
Q 016639 219 PKLLVNILI--DGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT--PDD- 293 (385)
Q Consensus 219 i~~Lv~lL~--~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~--~Dd- 293 (385)
...+++..- ...++.+++..++.++..+..-+..-.+.+|+.-....+..-|++.+++|.-.|...-+-++. .|-
T Consensus 219 rNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~ 298 (858)
T COG5215 219 RNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGE 298 (858)
T ss_pred hchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhH
Confidence 222322221 224688999999999999888777777888887777777888888887666555433222220 000
Q ss_pred ------cchhhhhchhHHHHHHhcCcHHHHHHHHhcC
Q 016639 294 ------DQVVASQVYGYARRFAKIGIARALVHSLHAG 324 (385)
Q Consensus 294 ------~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~ 324 (385)
-.+|. +.|.-++.-+ .+++|.|+.+|...
T Consensus 299 ~e~~~~pe~p~-qn~~fa~aav-~dvlP~lL~LL~~q 333 (858)
T COG5215 299 MEDKYLPEVPA-QNHGFARAAV-ADVLPELLSLLEKQ 333 (858)
T ss_pred HHHhhcccCch-hhcchHHHHH-HHHHHHHHHHHHhc
Confidence 12222 3344444333 36899999999873
No 165
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=51.27 E-value=2.3e+02 Score=27.13 Aligned_cols=139 Identities=12% Similarity=0.172 Sum_probs=71.7
Q ss_pred HHHHHHcCcHH-HHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHH
Q 016639 166 AAVATKNGGVE-LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVA 244 (385)
Q Consensus 166 r~~~~~~Gaip-~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~ 244 (385)
|..+++.+.++ -|+.+|.+.. ++.++...+++.|.+|+.-- .+ +....+..........-+.
T Consensus 33 ~r~lg~~~iv~~DLiPiL~~~~-~~~~l~~~~l~LLV~LT~P~----~~------------~~~~~~~~~~~~~~~~~l~ 95 (266)
T PF04821_consen 33 RRQLGEWNIVQKDLIPILISYK-DDDKLFLACLRLLVNLTWPI----EL------------LVESQPKDKNQRRNIPELL 95 (266)
T ss_pred HHHHHHhchhhhhHHHHHHhcc-CchHHHHHHHHHHHHhCCCH----HH------------hccCCCCChHHHHHHHHHH
Confidence 33344444444 4555555442 37889999999999987521 11 1000001111111111111
Q ss_pred HHhcCChhhHHHHHhCCChHHHHHHHcc----C----Ch---HHHHHHHHHHHHhcCC-Cccchhhhh-----chhH-HH
Q 016639 245 ASATGNEVVKESYMELKIDELILEILSR----Q----RN---DSIQSLYDAIRVLLTP-DDDQVVASQ-----VYGY-AR 306 (385)
Q Consensus 245 ~~~~~~e~nr~~iv~~G~i~~Lv~lL~~----~----~~---~v~k~A~~aL~~Lt~~-Dd~rv~~g~-----a~~~-a~ 306 (385)
.. --..|.+|.+.+++..++..|.. . +. .+++-..-.+||+..- +......+. .|+. ..
T Consensus 96 ~~---l~~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~ 172 (266)
T PF04821_consen 96 KY---LQSYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIW 172 (266)
T ss_pred HH---HHHHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHH
Confidence 11 12456777777777777766522 1 11 6777789999999643 222111110 1222 22
Q ss_pred HHHhcCcHHHHHHHHhcC
Q 016639 307 RFAKIGIARALVHSLHAG 324 (385)
Q Consensus 307 ~I~e~Ggi~~Lv~lL~~~ 324 (385)
.+-+.|+...|+.+....
T Consensus 173 ~l~~~~v~~lLL~l~s~~ 190 (266)
T PF04821_consen 173 ALFESGVLDLLLTLASSP 190 (266)
T ss_pred HHHHcCHHHHHHHHHhCc
Confidence 233678888888888774
No 166
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=50.89 E-value=3.6e+02 Score=29.53 Aligned_cols=102 Identities=13% Similarity=0.104 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHH-cCcHHHHHHHHhcccCCcHhHHHHHH
Q 016639 119 PLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCL 197 (385)
Q Consensus 119 ~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~-~Gaip~Lv~lL~~~~~~d~~vl~~Al 197 (385)
|+-..|.+|...+-++ ....+.+...-+..+|.. +|+..- ..+ ....=-|+..|++. ++++..+|.
T Consensus 685 Pi~~ilP~ltPILrnk-------h~Kv~~nti~lvg~I~~~--~peyi~-~rEWMRIcfeLvd~Lks~---nKeiRR~A~ 751 (975)
T COG5181 685 PISGILPSLTPILRNK-------HQKVVANTIALVGTICMN--SPEYIG-VREWMRICFELVDSLKSW---NKEIRRNAT 751 (975)
T ss_pred chhhccccccHhhhhh-------hHHHhhhHHHHHHHHHhc--CcccCC-HHHHHHHHHHHHHHHHHh---hHHHHHhhh
Confidence 5556666777776665 456677888888899987 666210 000 01233478888874 788888888
Q ss_pred HHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHH
Q 016639 198 KTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVV 243 (385)
Q Consensus 198 ~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L 243 (385)
.+++.+.. +=|..-++..|-++...++-+...|..+
T Consensus 752 ~tfG~Is~----------aiGPqdvL~~LlnnLkvqeRq~Rvctsv 787 (975)
T COG5181 752 ETFGCISR----------AIGPQDVLDILLNNLKVQERQQRVCTSV 787 (975)
T ss_pred hhhhhHHh----------hcCHHHHHHHHHhcchHHHHHhhhhhhh
Confidence 88887653 2344445555554444444444444443
No 167
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=50.75 E-value=75 Score=24.95 Aligned_cols=70 Identities=4% Similarity=0.097 Sum_probs=52.4
Q ss_pred cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 311 IGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 311 ~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
...+.|+..++....+.++++-.+..+.++..+.. ..| ..|-+.+..++.....+.++.+++.|+.+++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~--~~i--~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRG--ENI--KSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhH--HHH--HhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 34578999998775567788877777777765431 333 25799999998887777778999999998875
No 168
>PHA01748 hypothetical protein
Probab=50.49 E-value=28 Score=25.60 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=28.0
Q ss_pred hhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHHH
Q 016639 60 TVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLS 96 (385)
Q Consensus 60 ~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qfe 96 (385)
++-+|+++. .+-+.+-....+++..|++++||++|-
T Consensus 5 iSvrLp~el-~~eld~~a~~~g~~RSE~Ir~Ai~~~~ 40 (60)
T PHA01748 5 ITFKIEEDL-LELLDRYAIKHGLNRSEAIRKAIEKMV 40 (60)
T ss_pred EEEECCHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344577887 555667777789999999999999873
No 169
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=50.31 E-value=2.7e+02 Score=27.95 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=62.2
Q ss_pred cHhHHHHHHHHHHHHhcCCccchhHhhCCC---cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 016639 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGG---PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDEL 265 (385)
Q Consensus 189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~gg---i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~ 265 (385)
+..+...|++.|+.+.........+-+..+ ++..+..|.+.+.+-.+....+|+|+.- .-...++....+..
T Consensus 59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q-----~f~~~~~~~~~~~~ 133 (372)
T PF12231_consen 59 DSRLVIQALKLLGFFLYHPEIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQ-----KFSPKIMTSDRVER 133 (372)
T ss_pred chHHHHHHHHHHHHHHccHHHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC-----CCCCcccchhhHHH
Confidence 567889999999999876432222222222 4455566666666677888888888642 12233566666666
Q ss_pred HHHHHcc-----CChHHHHHHHHHHHHhcC
Q 016639 266 ILEILSR-----QRNDSIQSLYDAIRVLLT 290 (385)
Q Consensus 266 Lv~lL~~-----~~~~v~k~A~~aL~~Lt~ 290 (385)
++.++.. ++..+..+...+++.|..
T Consensus 134 l~~~l~~i~~~~~s~si~~erL~i~~~ll~ 163 (372)
T PF12231_consen 134 LLAALHNIKNRFPSKSIISERLNIYKRLLS 163 (372)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHH
Confidence 6666533 233788889999999863
No 170
>PRK14707 hypothetical protein; Provisional
Probab=48.81 E-value=6.5e+02 Score=31.71 Aligned_cols=151 Identities=15% Similarity=0.064 Sum_probs=87.9
Q ss_pred hhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC-hHHHHHHHHHHHHhcCCC
Q 016639 214 RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPD 292 (385)
Q Consensus 214 ~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~-~~v~k~A~~aL~~Lt~~D 292 (385)
++..++..+++.|+...++..-...+......++ .+.+.++.+ +..++..++..|..-. ..+-+.|+.+|..=..+|
T Consensus 328 ~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~-~d~~l~~~l-~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d 405 (2710)
T PRK14707 328 LNARGLSTALNALSKWPDNPVCAAAVSALAERLV-ADPELRKDL-EPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDD 405 (2710)
T ss_pred cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhc-cCHhhhccc-chhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccC
Confidence 4566788888888876655444444444444443 455565554 4667788888887743 356666666665544433
Q ss_pred c-cchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH-HhhcChHHHHHHHHcCcHHHHHHHHHhcCCcC
Q 016639 293 D-DQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK-AVAVNDEICKSVAENGGIDALLRCIDDSGLQG 370 (385)
Q Consensus 293 d-~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~-~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~ 370 (385)
. .|. -...-++.-+++.|..-++..+...+..+|. .++-+.+.|+.+.-.+ +..++..+.+.+|..
T Consensus 406 ~~l~~-----------~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~-va~~LnalSKWPd~p 473 (2710)
T PRK14707 406 LELRK-----------GLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPIN-VTQALDALSKWPDTP 473 (2710)
T ss_pred hhhhh-----------hcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHH-HHHHHHHhhcCCCCh
Confidence 3 221 1233456667777777555555555544444 3444558887776554 444557777776665
Q ss_pred cHHHHHHHHHH
Q 016639 371 NKTVARICCSL 381 (385)
Q Consensus 371 ~~~v~k~a~~~ 381 (385)
+-+++.+.
T Consensus 474 ---~c~~aa~~ 481 (2710)
T PRK14707 474 ---ICGQTASA 481 (2710)
T ss_pred ---hHHHHHHH
Confidence 55444443
No 171
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=47.93 E-value=29 Score=28.78 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHH
Q 016639 330 LISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVA 375 (385)
Q Consensus 330 ~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~ 375 (385)
+......|..||..++.--.++++|++..|+.+|. |+|.+++
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~----HeN~DIa 104 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLS----HENTDIA 104 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHC----CCCccee
Confidence 34566788889999999999999999999999994 5665654
No 172
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=47.58 E-value=47 Score=31.69 Aligned_cols=80 Identities=10% Similarity=0.078 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHhCC-------ChHHHHHHHccCChHHHHH-HHHHHHHhcCCCccchhhhhchhHHH
Q 016639 235 ILNSGFAVVAASATGNEVVKESYMELK-------IDELILEILSRQRNDSIQS-LYDAIRVLLTPDDDQVVASQVYGYAR 306 (385)
Q Consensus 235 v~~~a~~~L~~~~~~~e~nr~~iv~~G-------~i~~Lv~lL~~~~~~v~k~-A~~aL~~Lt~~Dd~rv~~g~a~~~a~ 306 (385)
-+..++-+|..+|. .|.|-..|...+ ....|+..|....+.+.+| |...|.+|+..|. .-++
T Consensus 140 PqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~---------~~~r 209 (257)
T PF12031_consen 140 PQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDE---------AAAR 209 (257)
T ss_pred HHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccH---------HHHH
Confidence 36778888888875 577766666554 4455666666666666666 8999999987665 3355
Q ss_pred HHH-hcCcHHHHHHHHhcC
Q 016639 307 RFA-KIGIARALVHSLHAG 324 (385)
Q Consensus 307 ~I~-e~Ggi~~Lv~lL~~~ 324 (385)
.++ +.++|..|+.++...
T Consensus 210 ~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 210 AIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred HHHHhhchHHHHHHHHHHH
Confidence 676 678999999999774
No 173
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=46.15 E-value=1.6e+02 Score=25.97 Aligned_cols=109 Identities=14% Similarity=0.088 Sum_probs=60.6
Q ss_pred ChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcC--cHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016639 262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG--IARALVHSLHAGLSSPSLISASIALKA 339 (385)
Q Consensus 262 ~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~G--gi~~Lv~lL~~~~~~~v~~~a~~aL~~ 339 (385)
....+..+|++.+....-.++..+..+....+- ..+.++| -+..|+..|+...+..+++.++.+|..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~-----------e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~ 94 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW-----------EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTR 94 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH-----------HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 334567788777655555566566655532211 1233433 367888888885566778888888888
Q ss_pred hhc----ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 340 VAV----NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 340 La~----~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+.. .+++.+++.--. ++.++..+-.-.+.. .....++.+|..
T Consensus 95 l~~~~~~~p~l~Rei~tp~-l~~~i~~ll~l~~~~--~~~~~~l~~L~~ 140 (165)
T PF08167_consen 95 LFDLIRGKPTLTREIATPN-LPKFIQSLLQLLQDS--SCPETALDALAT 140 (165)
T ss_pred HHHHhcCCCchHHHHhhcc-HHHHHHHHHHHHhcc--ccHHHHHHHHHH
Confidence 854 356666765433 444333322211111 355566665553
No 174
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=45.52 E-value=1.2e+02 Score=24.35 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=24.9
Q ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639 313 IARALVHSLHAGLSSPSLISASIALKAVAV 342 (385)
Q Consensus 313 gi~~Lv~lL~~~~~~~v~~~a~~aL~~La~ 342 (385)
.++|++..+... +..|.-.+|.+|.+++.
T Consensus 28 Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k 56 (97)
T PF12755_consen 28 ILPPVLKCFDDQ-DSRVRYYACEALYNISK 56 (97)
T ss_pred HHHHHHHHcCCC-cHHHHHHHHHHHHHHHH
Confidence 578999998774 77899999999999974
No 175
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=44.05 E-value=3.6e+02 Score=29.19 Aligned_cols=147 Identities=12% Similarity=-0.013 Sum_probs=78.2
Q ss_pred HcCcHHHHHHHHhcccCC----c--HhH-HHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHH--HHHHHHH
Q 016639 171 KNGGVELVCSICYKMRCG----S--KRV-LDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE--ILNSGFA 241 (385)
Q Consensus 171 ~~Gaip~Lv~lL~~~~~~----d--~~v-l~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~--v~~~a~~ 241 (385)
-++.+|.|+.||.+..++ | +.. ...||.-.+-+.. + .+ +++++.+...+-.++. -...+.-
T Consensus 319 v~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g-d----~i-----~~pVl~FvEqni~~~~w~nreaavm 388 (858)
T COG5215 319 VADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG-D----KI-----MRPVLGFVEQNIRSESWANREAAVM 388 (858)
T ss_pred HHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh-h----Hh-----HHHHHHHHHHhccCchhhhHHHHHH
Confidence 346799999999773221 1 122 3444555554433 2 22 3345555544322222 2334444
Q ss_pred HHHHHhcCC-hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH-hcCcHHHHHH
Q 016639 242 VVAASATGN-EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVH 319 (385)
Q Consensus 242 ~L~~~~~~~-e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~-e~Ggi~~Lv~ 319 (385)
++..+.-+. +.++..++ ...+|.|...+....--+..-++|++..++ +|...+. .+|-+++.+.
T Consensus 389 AfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~ia-------------d~va~~i~p~~Hl~~~vs 454 (858)
T COG5215 389 AFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIA-------------DHVAMIISPCGHLVLEVS 454 (858)
T ss_pred HhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHH-------------HHHHHhcCccccccHHHH
Confidence 555443322 22333333 467778887777544456666899998886 3333344 4555655555
Q ss_pred HHhcCC--CHHHHHHHHHHHHHhh
Q 016639 320 SLHAGL--SSPSLISASIALKAVA 341 (385)
Q Consensus 320 lL~~~~--~~~v~~~a~~aL~~La 341 (385)
..--+. ++.+..+.||+..+|+
T Consensus 455 a~liGl~D~p~~~~ncsw~~~nlv 478 (858)
T COG5215 455 ASLIGLMDCPFRSINCSWRKENLV 478 (858)
T ss_pred HHHhhhhccchHHhhhHHHHHhHH
Confidence 544433 3556667777777774
No 176
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=43.80 E-value=1.5e+02 Score=31.88 Aligned_cols=86 Identities=10% Similarity=0.088 Sum_probs=55.3
Q ss_pred cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (385)
Q Consensus 189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~ 268 (385)
+.++...|.-+|+-+|.++ ...+.-.+++|... .+.-|....+.+|.-.|++.-.+- .++.|-.
T Consensus 565 nDDVrRAAViAlGfvc~~D--------~~~lv~tvelLs~s-hN~hVR~g~AvaLGiacag~G~~~-------a~diL~~ 628 (926)
T COG5116 565 NDDVRRAAVIALGFVCCDD--------RDLLVGTVELLSES-HNFHVRAGVAVALGIACAGTGDKV-------ATDILEA 628 (926)
T ss_pred chHHHHHHHHheeeeEecC--------cchhhHHHHHhhhc-cchhhhhhhHHHhhhhhcCCccHH-------HHHHHHH
Confidence 4455555555666555443 34566778888763 467888888888888888776542 2344445
Q ss_pred HHccCChHHHHHHHHHHHHhcC
Q 016639 269 ILSRQRNDSIQSLYDAIRVLLT 290 (385)
Q Consensus 269 lL~~~~~~v~k~A~~aL~~Lt~ 290 (385)
++....+-|.+.||-++.-+++
T Consensus 629 L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 629 LMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred HhhCcHHHHHHHHHHHHHHHHh
Confidence 5555555677788888877764
No 177
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=43.57 E-value=1e+02 Score=32.50 Aligned_cols=141 Identities=12% Similarity=0.068 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHHhc----CCccchhHhhCCCcHH-HHHHHh----cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 016639 191 RVLDSCLKTMALLVH----DVQSTETFRTGGGPKL-LVNILI----DGNEDPEILNSGFAVVAASATGNEVVKESYMELK 261 (385)
Q Consensus 191 ~vl~~Al~aLa~L~~----~~~~~~~i~~~ggi~~-Lv~lL~----~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G 261 (385)
..++++.|+++++++ +.++ ++-..+..+-. +..+++ ...++.+|...+.+.|.+... .-+.+.+.|
T Consensus 448 n~r~KaawtlgnITdAL~~~~Ps-~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ----vlq~i~~~~ 522 (728)
T KOG4535|consen 448 NVRAKAAWSLGNITDALIVNMPT-PDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ----FLQPIEKPT 522 (728)
T ss_pred hHHHHHHHHhhhhHHHHHcCCCC-chHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH----HHHHhhhcc
Confidence 457888999998763 2211 11111111111 112221 123455666677777766432 112222222
Q ss_pred --------ChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHH
Q 016639 262 --------IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333 (385)
Q Consensus 262 --------~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a 333 (385)
.+..+-..+-.|...|+=|||-++.||-.+...+.. . ..++ .-..+.|+.+++.+.|=.+..++
T Consensus 523 ~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq--~-----~~wA-~~~F~~L~~Lv~~~~NFKVRi~A 594 (728)
T KOG4535|consen 523 FAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQ--T-----APWA-SQAFNALTSLVTSCKNFKVRIRA 594 (728)
T ss_pred HHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCcccccc--C-----CCch-HHHHHHHHHHHHHhccceEeehh
Confidence 111111222234448899999999999765443211 0 0011 12357888888887664566677
Q ss_pred HHHHHHhhcCh
Q 016639 334 SIALKAVAVND 344 (385)
Q Consensus 334 ~~aL~~La~~~ 344 (385)
..+|..-+.+.
T Consensus 595 A~aL~vp~~re 605 (728)
T KOG4535|consen 595 AAALSVPGKRE 605 (728)
T ss_pred hhhhcCCCCcc
Confidence 77776655543
No 178
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=43.39 E-value=3e+02 Score=31.54 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=42.1
Q ss_pred ChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 262 ~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
.+|.|-..+++.......-+..+++....++.-.+. ......|.-.+.+++.. |..|...++.++..-+
T Consensus 967 LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id----------~~lk~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaa 1035 (1233)
T KOG1824|consen 967 LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPID----------PLLKQQIGDFLKLLRDP-DLEVRRVALVVLNSAA 1035 (1233)
T ss_pred HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccC----------HHHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHH
Confidence 456677777776554444455555555554443332 11223355566666664 6667777777776666
Q ss_pred cChHHH
Q 016639 342 VNDEIC 347 (385)
Q Consensus 342 ~~~e~c 347 (385)
-|.+.|
T Consensus 1036 hNKpsl 1041 (1233)
T KOG1824|consen 1036 HNKPSL 1041 (1233)
T ss_pred ccCHhH
Confidence 654444
No 179
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=42.11 E-value=3.4e+02 Score=26.55 Aligned_cols=179 Identities=17% Similarity=0.132 Sum_probs=85.7
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHH-HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHH--hcCC-ccchhHhhCC
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVA-TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL--VHDV-QSTETFRTGG 217 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~-~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L--~~~~-~~~~~i~~~g 217 (385)
....-..+|..|...+.. ..-...+- ...-.+..+...+++. ..+-+..|+++++.+ .-|. +....+.+ .
T Consensus 56 ~~~~Re~aL~~l~~~l~~--~~~~d~v~~~~~tL~~~~~k~lkkg---~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~ 129 (309)
T PF05004_consen 56 SSSTREAALEALIRALSS--RYLPDFVEDRRETLLDALLKSLKKG---KSEEQALAARALALLALTLGAGEDSEEIFE-E 129 (309)
T ss_pred CHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHhhhcCCCccHHHHHH-H
Confidence 345566778888777765 22211111 1223455666667664 222333455555544 3331 11233333 4
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHH---HhcCChhhHHHHHhCCChHHHH--HHHccCC----------hHHHHHH-
Q 016639 218 GPKLLVNILIDGNEDPEILNSGFAVVAA---SATGNEVVKESYMELKIDELIL--EILSRQR----------NDSIQSL- 281 (385)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~---~~~~~e~nr~~iv~~G~i~~Lv--~lL~~~~----------~~v~k~A- 281 (385)
..|.|..++.+......+...++.+|+- ++...++.....|+ .+..+. ..++... ..++-.|
T Consensus 130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL 207 (309)
T PF05004_consen 130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAAL 207 (309)
T ss_pred HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHH
Confidence 6678888888876555554444444443 34344333332222 222111 1122211 1345444
Q ss_pred -HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639 282 -YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (385)
Q Consensus 282 -~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~L 340 (385)
+|+|-.-+. ++.++ ..+. ...++.|+++|.+. +.+|+..+-.+|+-|
T Consensus 208 ~aW~lLlt~~-~~~~~---------~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 208 SAWALLLTTL-PDSKL---------EDLL-EEALPALSELLDSD-DVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHHhcC-CHHHH---------HHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 444443222 22111 1122 23589999999874 777776655555444
No 180
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=41.11 E-value=2e+02 Score=27.42 Aligned_cols=136 Identities=15% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-----HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh
Q 016639 236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK 310 (385)
Q Consensus 236 ~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-----~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e 310 (385)
++.++..+.-+++ |++.|..|.++..---|...|...+. -..-.+.++|.+|.-+|+ .+-.+.+..
T Consensus 117 vcnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNds--------q~vi~fLlt 187 (315)
T COG5209 117 VCNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDS--------QYVIKFLLT 187 (315)
T ss_pred HHHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCC--------HHHHHHHHh
Q ss_pred cCcHHHHHHHHhcCC--CH--------------HHHHHHHHHHHHh-hcC---hHHHHHHHHcCcHHHHHHHHHhcCCcC
Q 016639 311 IGIARALVHSLHAGL--SS--------------PSLISASIALKAV-AVN---DEICKSVAENGGIDALLRCIDDSGLQG 370 (385)
Q Consensus 311 ~Ggi~~Lv~lL~~~~--~~--------------~v~~~a~~aL~~L-a~~---~e~c~~I~e~GGl~~Lv~ll~~~~~~~ 370 (385)
..++|.+++.+..++ ++ ..+..+|.++.+. |++ +......+..|.-..|-.++|-+..-.
T Consensus 188 TeivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLs 267 (315)
T COG5209 188 TEIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLS 267 (315)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeec
Q ss_pred cHHHHHHHHH
Q 016639 371 NKTVARICCS 380 (385)
Q Consensus 371 ~~~v~k~a~~ 380 (385)
++.-+|..++
T Consensus 268 d~p~aR~lL~ 277 (315)
T COG5209 268 DKPHARALLS 277 (315)
T ss_pred CCHhHHHHHh
No 181
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=40.67 E-value=4.7e+02 Score=27.67 Aligned_cols=214 Identities=15% Similarity=0.062 Sum_probs=102.3
Q ss_pred HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHH
Q 016639 77 MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIEL 156 (385)
Q Consensus 77 i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~l 156 (385)
+..+..-..|.+++..+|+..+....-.+..|.- ...++++.+..+ +..+.+.+ + ...+...++..+-..
T Consensus 317 v~~lR~~~~e~l~~l~~~~~~~~~~~r~~~~Dal--~~~GT~~a~~~i---~~~i~~~~--~---~~~ea~~~~~~~~~~ 386 (574)
T smart00638 317 VRLLRTLSEEQLEQLWRQLYEKKKKARRIFLDAV--AQAGTPPALKFI---KQWIKNKK--I---TPLEAAQLLAVLPHT 386 (574)
T ss_pred HHHHHhCCHHHHHHHHHHHHhCCHHHHHHHHHHH--HhcCCHHHHHHH---HHHHHcCC--C---CHHHHHHHHHHHHHh
Confidence 5566777778888888876433212223333321 112444554444 33333210 1 112333333333333
Q ss_pred hcCCCChhhHHHHHHcCcHHHHHHHHhccc-CCcHhHHHHHHHHHHHHhcCCcc----chhHhhCCCcHHHHHHHhcC--
Q 016639 157 CGGNEGSVNAAVATKNGGVELVCSICYKMR-CGSKRVLDSCLKTMALLVHDVQS----TETFRTGGGPKLLVNILIDG-- 229 (385)
Q Consensus 157 c~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~-~~d~~vl~~Al~aLa~L~~~~~~----~~~i~~~ggi~~Lv~lL~~~-- 229 (385)
... |. . ..+..+..++++.. .....+...|+-+++++....-. ++..+-..-++.+.+.|...
T Consensus 387 ~~~---Pt-~------~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~ 456 (574)
T smart00638 387 ARY---PT-E------EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVS 456 (574)
T ss_pred hhc---CC-H------HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHh
Confidence 221 22 1 13666777776431 13456777778888887753110 11111122445555555431
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHc-cC--ChHHHHHHHHHHHHhcCCCccchhhhhchhHHH
Q 016639 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS-RQ--RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYAR 306 (385)
Q Consensus 230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~-~~--~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~ 306 (385)
..+.+-....+++|.|+ |++. .++.|...+. .. +..++..|.++|+.++..+..
T Consensus 457 ~~~~~~~~~~LkaLGN~--g~~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~------------ 513 (574)
T smart00638 457 KGDEEEIQLYLKALGNA--GHPS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR------------ 513 (574)
T ss_pred cCCchheeeHHHhhhcc--CChh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch------------
Confidence 12223334455666553 3432 2334444444 21 226777899999988632221
Q ss_pred HHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHH
Q 016639 307 RFAKIGIARALVHSLHAGL-SSPSLISASIALK 338 (385)
Q Consensus 307 ~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~ 338 (385)
. +-+.|+.+..... +++++..|+.+|-
T Consensus 514 -~----v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 514 -K----VQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred -H----HHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 1 2356667666655 5677666665553
No 182
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.41 E-value=2.4e+02 Score=28.65 Aligned_cols=129 Identities=18% Similarity=0.101 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCC-cHHH
Q 016639 144 NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGG-PKLL 222 (385)
Q Consensus 144 ~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~gg-i~~L 222 (385)
.+....+.-+..+|+. + -+...+.. +..|+++|.+. ..++ + .. +..|.+ +-.+.+..| ++.=
T Consensus 300 ~~~l~~~~l~d~lce~--~-v~~~lisy---i~~l~~lLd~~----i~LL----r-~~-~v~gke-T~ni~s~egcvr~e 362 (478)
T KOG2676|consen 300 LKNLDSSSLGDMLCET--S-VPSSLISY---IIHLLALLDKR----IPLL----R-KT-LVEGKE-TYNISSMEGCVRQE 362 (478)
T ss_pred hhhhhhhhHHHHHHhc--C-CcHHHHHH---HHHHHHHHHHh----hHHH----H-HH-hhcccc-eeeeccccchHHhh
Confidence 3455556666777775 3 33444443 77777777653 1122 1 11 233422 222333333 2221
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHcc-CChHHHHH-HHHHHHHhcCCC
Q 016639 223 VNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR-QRNDSIQS-LYDAIRVLLTPD 292 (385)
Q Consensus 223 v~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~-~~~~v~k~-A~~aL~~Lt~~D 292 (385)
..+-....... +...+.|+++|.++.++...|-+.||++.++.=-.- +.++-+++ ..-++|+|+-++
T Consensus 363 l~i~nv~n~~e---sHvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN 431 (478)
T KOG2676|consen 363 LYIANVGNKRE---SHVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNN 431 (478)
T ss_pred hhhhhhcccch---HHHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcc
Confidence 11111111111 135678999999999999999999999988754322 23355555 777899998544
No 183
>PF15127 DUF4565: Protein of unknown function (DUF4565)
Probab=40.25 E-value=28 Score=27.80 Aligned_cols=31 Identities=35% Similarity=0.419 Sum_probs=22.3
Q ss_pred HHHhhHHhcCCChhHHHHHHHHHHHHcCCCCCCC
Q 016639 72 VVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGI 105 (385)
Q Consensus 72 ~v~eni~~f~m~~~eAl~~aI~qfe~QGvdLsni 105 (385)
||-|.-..+ -+|-|.+|++||.-.++-.++|
T Consensus 53 vvlEyA~rL---SqEIl~dAlqQWA~~n~kY~DI 83 (91)
T PF15127_consen 53 VVLEYAHRL---SQEILSDALQQWAENNIKYSDI 83 (91)
T ss_pred hhHHHHHHH---HHHHHHHHHHHHHHhCccccCC
Confidence 344444444 3567999999999888888877
No 184
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=40.05 E-value=3.2e+02 Score=26.17 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=76.5
Q ss_pred HHHHHHH-HHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCC----CCCC----cccHHHHHHHHHHHHHHhcC
Q 016639 89 QDAIQTL-SLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSK----DKFS----DEDLNEMMGLFDKLIELCGG 159 (385)
Q Consensus 89 ~~aI~qf-e~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~----~~~~----~~~~~~~~~al~~L~~lc~~ 159 (385)
.|..+|. |.-=|=|+||.....- ....++-....++.|.+...... +... .+...-++=+|++|+.+|-.
T Consensus 76 wd~l~~lREnalV~laNisgqLdL-s~~~e~I~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~ 154 (257)
T PF12031_consen 76 WDCLEQLRENALVTLANISGQLDL-SDYPESIARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVI 154 (257)
T ss_pred HHHHHHHhhcceEeeeeeeeeeec-ccCchHHHHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhhee
Confidence 4444444 2222678888655322 11122233467888888776432 1111 13356677888888888885
Q ss_pred CCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHH
Q 016639 160 NEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSG 239 (385)
Q Consensus 160 ~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a 239 (385)
+.|-.++...+-...| +.-...|..++..+ +++-....+
T Consensus 155 ---e~NVDliLaTpp~sRl---------------E~l~~~L~r~l~~~-----------------------e~~v~REfA 193 (257)
T PF12031_consen 155 ---ENNVDLILATPPFSRL---------------ERLFHTLVRLLGMR-----------------------EDQVCREFA 193 (257)
T ss_pred ---ccCcceeeeCCCHHHH---------------HHHHHHHHHHhccc-----------------------cchhHHHHH
Confidence 6666666555543332 22223344333322 233444555
Q ss_pred HHHHHHHhcCChhhHHHHH-hCCChHHHHHHHccC
Q 016639 240 FAVVAASATGNEVVKESYM-ELKIDELILEILSRQ 273 (385)
Q Consensus 240 ~~~L~~~~~~~e~nr~~iv-~~G~i~~Lv~lL~~~ 273 (385)
...|.++|.+++.-...+. +.+.|..|+..+..+
T Consensus 194 vvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 194 VVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred HHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 6666666666655443443 567777788777543
No 185
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=39.23 E-value=1.2e+02 Score=25.65 Aligned_cols=67 Identities=19% Similarity=0.145 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 314 ARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 314 i~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
+..|-.=|.+ .++.++..++..|..+..| ..+..+|...+.++.|+.++...+.++ .|.+.++.++.
T Consensus 39 ~r~l~krl~~-~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~--~Vk~kil~li~ 107 (133)
T smart00288 39 VRLLKKRLNN-KNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLP--LVKKRILELIQ 107 (133)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcH--HHHHHHHHHHH
Confidence 3444444444 3666777777777777766 468888888888888888887755444 47777777664
No 186
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.07 E-value=4.8e+02 Score=29.01 Aligned_cols=62 Identities=10% Similarity=0.047 Sum_probs=41.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcC
Q 016639 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT 290 (385)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~ 290 (385)
++.+|.+ ..+=+.+.|.-++..++.+.++- + .-.+|.|++=|...++.|+..|..+++-|+.
T Consensus 149 v~tLL~s--skpYvRKkAIl~lykvFLkYPeA---l--r~~FprL~EkLeDpDp~V~SAAV~VICELAr 210 (877)
T KOG1059|consen 149 VFTLLNS--SKPYVRKKAILLLYKVFLKYPEA---L--RPCFPRLVEKLEDPDPSVVSAAVSVICELAR 210 (877)
T ss_pred HHHHHhc--CchHHHHHHHHHHHHHHHhhhHh---H--hhhHHHHHHhccCCCchHHHHHHHHHHHHHh
Confidence 4455553 34556666777777776665532 2 1356788888888777888888888888874
No 187
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.38 E-value=6.2e+02 Score=28.42 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=91.4
Q ss_pred chHH-HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHH
Q 016639 118 NPLI-QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSC 196 (385)
Q Consensus 118 ~~v~-~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~A 196 (385)
|.++ .....|+.-+..+ +.-.+.-||-.|..+|.. +-.|. ..|-+.++|+. .++-+..+|
T Consensus 102 qdvllLltNslknDL~s~-------nq~vVglAL~alg~i~s~---Emard------lapeVe~Ll~~---~~~~irKKA 162 (866)
T KOG1062|consen 102 QDLLLLLTNSLKNDLNSS-------NQYVVGLALCALGNICSP---EMARD------LAPEVERLLQH---RDPYIRKKA 162 (866)
T ss_pred hHHHHHHHHHHHhhccCC-------CeeehHHHHHHhhccCCH---HHhHH------hhHHHHHHHhC---CCHHHHHHH
Confidence 4444 4555666666554 677888888888888863 33444 35667778887 488899999
Q ss_pred HHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC--
Q 016639 197 LKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR-- 274 (385)
Q Consensus 197 l~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~-- 274 (385)
..+..-+....+ +.++.=-++ --++|.+ .+..|.-.+...+..+|..+.+.-..+-+ ..+-+|..|+.-.
T Consensus 163 ~Lca~r~irK~P---~l~e~f~~~-~~~lL~e--k~hGVL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~ 234 (866)
T KOG1062|consen 163 ALCAVRFIRKVP---DLVEHFVIA-FRKLLCE--KHHGVLIAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNS 234 (866)
T ss_pred HHHHHHHHHcCc---hHHHHhhHH-HHHHHhh--cCCceeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcC
Confidence 888888877653 333322222 2233332 23566667777777788777766655554 6666666665410
Q ss_pred ---h----------HHHHHHHHHHHHhcCCCc
Q 016639 275 ---N----------DSIQSLYDAIRVLLTPDD 293 (385)
Q Consensus 275 ---~----------~v~k~A~~aL~~Lt~~Dd 293 (385)
. =.|-.....|+-|-.+|.
T Consensus 235 ~yspeydv~gi~dPFLQi~iLrlLriLGq~d~ 266 (866)
T KOG1062|consen 235 GYSPEYDVHGISDPFLQIRILRLLRILGQNDA 266 (866)
T ss_pred CCCCccCccCCCchHHHHHHHHHHHHhcCCCc
Confidence 0 244456666776655443
No 188
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=38.38 E-value=5.3e+02 Score=27.68 Aligned_cols=88 Identities=9% Similarity=0.143 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHh
Q 016639 148 GLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILI 227 (385)
Q Consensus 148 ~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~ 227 (385)
++...+-...++ ++.-+.++++ -|| ...+. -+++...|+.++--||.+.
T Consensus 23 ~~y~~il~~~kg--~~k~K~Laaq--~I~---kffk~----FP~l~~~Ai~a~~DLcEDe-------------------- 71 (556)
T PF05918_consen 23 EDYKEILDGVKG--SPKEKRLAAQ--FIP---KFFKH----FPDLQEEAINAQLDLCEDE-------------------- 71 (556)
T ss_dssp HHHHHHHHGGGS---HHHHHHHHH--HHH---HHHCC-----GGGHHHHHHHHHHHHT-S--------------------
T ss_pred HHHHHHHHHccC--CHHHHHHHHH--HHH---HHHhh----ChhhHHHHHHHHHHHHhcc--------------------
Confidence 445555555565 5555555443 122 22232 4667777888887777653
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh
Q 016639 228 DGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN 275 (385)
Q Consensus 228 ~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~ 275 (385)
+..|...|.+.|-.+|..+++....|+ +.|+.+|.+...
T Consensus 72 ----d~~iR~~aik~lp~~ck~~~~~v~kva-----DvL~QlL~tdd~ 110 (556)
T PF05918_consen 72 ----DVQIRKQAIKGLPQLCKDNPEHVSKVA-----DVLVQLLQTDDP 110 (556)
T ss_dssp ----SHHHHHHHHHHGGGG--T--T-HHHHH-----HHHHHHTT---H
T ss_pred ----cHHHHHHHHHhHHHHHHhHHHHHhHHH-----HHHHHHHhcccH
Confidence 467777888888888876665555544 578888887665
No 189
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=37.56 E-value=11 Score=36.61 Aligned_cols=11 Identities=55% Similarity=1.117 Sum_probs=8.9
Q ss_pred CCcchhhcccC
Q 016639 3 TVPKSYYKHFS 13 (385)
Q Consensus 3 ~~~~~~~~~~~ 13 (385)
||||+||+||-
T Consensus 62 ~VPK~wF~HFY 72 (304)
T KOG1640|consen 62 TVPKRWFSHFY 72 (304)
T ss_pred cCcHHHHHHHH
Confidence 78888888873
No 190
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=37.55 E-value=1.2e+02 Score=34.27 Aligned_cols=99 Identities=10% Similarity=0.058 Sum_probs=60.3
Q ss_pred CcHhHHHHHHHHHHHHhcCCcc-chhHhh----CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 016639 188 GSKRVLDSCLKTMALLVHDVQS-TETFRT----GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKI 262 (385)
Q Consensus 188 ~d~~vl~~Al~aLa~L~~~~~~-~~~i~~----~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~ 262 (385)
.|++++-+||+.+-++..+.+. ++..+. ..|-+.. .|..++.. +++...++-+|+ .+-..+|
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~~ks-~~le~~l~~mw~----------~Vr~ndG 740 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAGTKS-AKLEQVLRQMWE----------AVRGNDG 740 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCCCch-HHHHHHHHHHHH----------HHhcCcc
Confidence 3789999999999998877644 344332 1222221 22333222 233333333333 3334569
Q ss_pred hHHHHHHHccCCh-----HHHHHHHHHHHHhcCCCccchhhh
Q 016639 263 DELILEILSRQRN-----DSIQSLYDAIRVLLTPDDDQVVAS 299 (385)
Q Consensus 263 i~~Lv~lL~~~~~-----~v~k~A~~aL~~Lt~~Dd~rv~~g 299 (385)
|..|+.+|+-..+ .+.+-||.+|.-|+.+|.+|.-.+
T Consensus 741 IkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~tVrQIlt 782 (1516)
T KOG1832|consen 741 IKILLKLLQYKNPPTTADCIRALACRVLLGLARDDTVRQILT 782 (1516)
T ss_pred HHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcHHHHHHH
Confidence 9999999976433 455559999999999998876433
No 191
>COG4423 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.42 E-value=51 Score=25.88 Aligned_cols=29 Identities=28% Similarity=0.443 Sum_probs=26.6
Q ss_pred hHHHHHHHHHhhHHhcCCChhHHHHHHHHH
Q 016639 65 SQEAFDEVVKENMEDLGMEPTEALQDAIQT 94 (385)
Q Consensus 65 sqetfd~~v~eni~~f~m~~~eAl~~aI~q 94 (385)
.+|+ |..|++=..-.+++-.+|+++|+++
T Consensus 7 Dp~~-d~lar~LA~rtg~S~t~AV~~Al~~ 35 (81)
T COG4423 7 DPEV-DRLARELAARTGESKTDAVRDALKE 35 (81)
T ss_pred ChHH-HHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 4566 9999999999999999999999987
No 192
>PRK09169 hypothetical protein; Validated
Probab=37.17 E-value=7.9e+02 Score=31.05 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=31.3
Q ss_pred HHHHHcCCCCCCCccCCCCCCCCCCchHH-HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHh
Q 016639 93 QTLSLQGVDLSGIVKCVPGESSLKDNPLI-QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELC 157 (385)
Q Consensus 93 ~qfe~QGvdLsni~~~~~~~~~~~~~~v~-~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc 157 (385)
+.|+.||| +|+.-...+-+.. +.. .+-+.|...+...-..++..+...+.+.||.|+.+-
T Consensus 494 ~af~~Q~l--AN~LnALsKwp~~---~~c~~aA~aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP 554 (2316)
T PRK09169 494 QALDAQGL--ANALNALSKWPDS---DACRAAAEALADRLAQDPALLQAMDAQGLANTLNALSKWP 554 (2316)
T ss_pred hhcChHHH--HHHHHHHhcCCcc---HHHHHHHHHHHHHHhcChhhhhhcCHHHHHHHHHHHHcCC
Confidence 45888885 5554433332111 121 233334333322212234457889999999998773
No 193
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.58 E-value=6.4e+02 Score=28.07 Aligned_cols=197 Identities=15% Similarity=0.199 Sum_probs=102.0
Q ss_pred HHHHHHhhHHhcCCChhHHHHHHHHHHHHcCCCCCCCccC-CCCCCCCCCchHHH-HHHHHHHHhhcCCCCCCcccHHHH
Q 016639 69 FDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKC-VPGESSLKDNPLIQ-SLERLKQLDLNSKDKFSDEDLNEM 146 (385)
Q Consensus 69 fd~~v~eni~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~-~~~~~~~~~~~v~~-al~~L~~~l~~~~~~~~~~~~~~~ 146 (385)
-++.|+-|=+++.--..-|+...-.=...+|.||..-.-- +|. |-+. -+=+|....-- -+ |....
T Consensus 211 i~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~-------PWL~vKl~rlLq~~p~----~~--D~~~r 277 (938)
T KOG1077|consen 211 IEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPA-------PWLQVKLLRLLQIYPT----PE--DPSTR 277 (938)
T ss_pred HHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCC-------hHHHHHHHHHHHhCCC----CC--CchHH
Confidence 3567777777776666666666555567788886433111 222 3331 11122222211 11 33344
Q ss_pred HHHHHHHHHHhcCCC-ChhhHHHHHHcCc-HHHHHHH---HhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639 147 MGLFDKLIELCGGNE-GSVNAAVATKNGG-VELVCSI---CYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (385)
Q Consensus 147 ~~al~~L~~lc~~~~-~~~~r~~~~~~Ga-ip~Lv~l---L~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~ 221 (385)
....+.|..+..+.. .+.++.. .+..+ -..|.++ ..+. +..++++..|+..|+.++...+.
T Consensus 278 ~~l~evl~~iLnk~~~~~~~k~v-q~~na~naVLFeaI~l~~h~-D~e~~ll~~~~~~Lg~fls~rE~------------ 343 (938)
T KOG1077|consen 278 ARLNEVLERILNKAQEPPKSKKV-QHSNAKNAVLFEAISLAIHL-DSEPELLSRAVNQLGQFLSHRET------------ 343 (938)
T ss_pred HHHHHHHHHHHhccccCccccch-HhhhhHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHhhcccc------------
Confidence 445555555554321 1221111 11111 1223333 3222 34678999999999988876432
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-HHHHHHHHHHHHhcCCCccchhhhh
Q 016639 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-DSIQSLYDAIRVLLTPDDDQVVASQ 300 (385)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~ 300 (385)
.+.-.++-.+..+|+. +....++-.. .+.++..|+...+ .+++.|...|-.+|-.
T Consensus 344 ------------NiRYLaLEsm~~L~ss-~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~--------- 399 (938)
T KOG1077|consen 344 ------------NIRYLALESMCKLASS-EFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDV--------- 399 (938)
T ss_pred ------------cchhhhHHHHHHHHhc-cchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhch---------
Confidence 2333333344444432 3333333333 6788888886544 7888899888888731
Q ss_pred chhHHHHHHhcCcHHHHHHHHhc
Q 016639 301 VYGYARRFAKIGIARALVHSLHA 323 (385)
Q Consensus 301 a~~~a~~I~e~Ggi~~Lv~lL~~ 323 (385)
+|++.||. -|+..|..
T Consensus 400 --~Nak~IV~-----elLqYL~t 415 (938)
T KOG1077|consen 400 --SNAKQIVA-----ELLQYLET 415 (938)
T ss_pred --hhHHHHHH-----HHHHHHhh
Confidence 56777763 45555544
No 194
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.32 E-value=2.9e+02 Score=29.75 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=51.3
Q ss_pred HHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHH-HHHHHHHHH
Q 016639 166 AAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEI-LNSGFAVVA 244 (385)
Q Consensus 166 r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v-~~~a~~~L~ 244 (385)
.....-....+.|+..|+. .+..++..++..+++++.+..+. +-.+++..+|..+.++..+ -..|.-.++
T Consensus 370 ql~~h~~~if~tLL~tLsd---~sd~vvl~~L~lla~i~~s~~~~------~~~~fl~sLL~~f~e~~~~l~~Rg~lIIR 440 (675)
T KOG0212|consen 370 QLLVHNDSIFLTLLKTLSD---RSDEVVLLALSLLASICSSSNSP------NLRKFLLSLLEMFKEDTKLLEVRGNLIIR 440 (675)
T ss_pred hhhhhccHHHHHHHHhhcC---chhHHHHHHHHHHHHHhcCcccc------cHHHHHHHHHHHHhhhhHHHHhhhhHHHH
Confidence 4444445567777777765 47789999999999999876432 4478888888776665554 346666666
Q ss_pred HHhc
Q 016639 245 ASAT 248 (385)
Q Consensus 245 ~~~~ 248 (385)
.+|.
T Consensus 441 qlC~ 444 (675)
T KOG0212|consen 441 QLCL 444 (675)
T ss_pred HHHH
Confidence 6665
No 195
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=36.25 E-value=4.5e+02 Score=26.20 Aligned_cols=217 Identities=10% Similarity=0.040 Sum_probs=123.6
Q ss_pred cccHHHHHHHHHHHHHHhcCCCChhhHH-----HHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHh
Q 016639 140 DEDLNEMMGLFDKLIELCGGNEGSVNAA-----VATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR 214 (385)
Q Consensus 140 ~~~~~~~~~al~~L~~lc~~~~~~~~r~-----~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~ 214 (385)
..+.|........+..+.+. ..+.+. .+. ...-..|..|++.. +++++...|=.-|.-.+.......-++
T Consensus 87 ~L~fEsrKdv~~if~~llr~--~~~~~~~p~v~yl~-~~~peil~~L~~gy--~~~dial~~g~mlRec~k~e~l~~~iL 161 (335)
T PF08569_consen 87 KLDFESRKDVAQIFSNLLRR--QIGSRSPPTVDYLE-RHRPEILDILLRGY--ENPDIALNCGDMLRECIKHESLAKIIL 161 (335)
T ss_dssp GS-HHHHHHHHHHHHHHHT----BTTB--HHHHHHH-T--THHHHHHHHGG--GSTTTHHHHHHHHHHHTTSHHHHHHHH
T ss_pred hCCCcccccHHHHHHHHHhh--ccCCCCCchHHHHH-hCCHHHHHHHHHHh--cCccccchHHHHHHHHHhhHHHHHHHh
Confidence 33667777777777777765 333322 121 12123333344443 233333333333333333222234445
Q ss_pred hCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC---ChHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 016639 215 TGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK---IDELILEILSRQRNDSIQSLYDAIRVLLTP 291 (385)
Q Consensus 215 ~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G---~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~ 291 (385)
+..-...+.+.+.. ++=+|.+.|+..+..+.+.|..--..+...+ .......+|.+.+--..+.+...|..|-.+
T Consensus 162 ~~~~f~~ff~~~~~--~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 162 YSECFWKFFKYVQL--PNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp TSGGGGGHHHHTTS--SSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHhcC--CccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 55555556665543 5678999999999999999988777777654 456778888888878888899999999875
Q ss_pred CccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHH--cCcHHHHHHHHHhcCCc
Q 016639 292 DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAE--NGGIDALLRCIDDSGLQ 369 (385)
Q Consensus 292 Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e--~GGl~~Lv~ll~~~~~~ 369 (385)
-.+... -.+++.+..-+..++.+|++. .+.++-+|+....-...|+.--..|.+ .--=+.|++.+.++...
T Consensus 240 r~n~~v------m~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~ 312 (335)
T PF08569_consen 240 RSNFNV------MTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTD 312 (335)
T ss_dssp GGGHHH------HHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT
T ss_pred hhHHHH------HHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCC
Confidence 443211 123444555689999999884 677999999988877665422222322 12234566777665443
Q ss_pred C
Q 016639 370 G 370 (385)
Q Consensus 370 ~ 370 (385)
.
T Consensus 313 ~ 313 (335)
T PF08569_consen 313 R 313 (335)
T ss_dssp -
T ss_pred C
Confidence 3
No 196
>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []. This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.
Probab=35.95 E-value=4e+02 Score=25.47 Aligned_cols=102 Identities=15% Similarity=0.152 Sum_probs=64.1
Q ss_pred HHHHHHccC--ChHHHHHHHHHHHHhcCCCcc------chhhhhc---------hhHHHHHHhcCcHHHHHHHHhcC---
Q 016639 265 LILEILSRQ--RNDSIQSLYDAIRVLLTPDDD------QVVASQV---------YGYARRFAKIGIARALVHSLHAG--- 324 (385)
Q Consensus 265 ~Lv~lL~~~--~~~v~k~A~~aL~~Lt~~Dd~------rv~~g~a---------~~~a~~I~e~Ggi~~Lv~lL~~~--- 324 (385)
-|+-+|.+. ...+.-.++..|.+||.+=+. +...+.. ..+.+.|...+.+.++++.|...
T Consensus 45 DLiPiL~~~~~~~~l~~~~l~LLV~LT~P~~~~~~~~~~~~~~~~~~~~l~~~l~~yK~afl~~~~l~~~~~~l~~~l~~ 124 (266)
T PF04821_consen 45 DLIPILISYKDDDKLFLACLRLLVNLTWPIELLVESQPKDKNQRRNIPELLKYLQSYKEAFLDPRVLKALIRLLLPPLEK 124 (266)
T ss_pred hHHHHHHhccCchHHHHHHHHHHHHhCCCHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 344444443 336778899999999974443 2111221 25566676777888888777331
Q ss_pred -C------CHHHHHHHHHHHHHhhc-----------------ChHHHHHHHHcCcHHHHHHHHHhc
Q 016639 325 -L------SSPSLISASIALKAVAV-----------------NDEICKSVAENGGIDALLRCIDDS 366 (385)
Q Consensus 325 -~------~~~v~~~a~~aL~~La~-----------------~~e~c~~I~e~GGl~~Lv~ll~~~ 366 (385)
. +..+++.++..++|+.. .+.+...+.+.|..+.|+.+..+.
T Consensus 125 ~~~~rt~~d~~ii~lvL~LiRNlL~Ip~~~~~~~~~~~~~~~~d~li~~l~~~~v~~lLL~l~s~~ 190 (266)
T PF04821_consen 125 DWEDRTERDNLIIELVLTLIRNLLAIPDPPSASKRSDEDSSLHDQLIWALFESGVLDLLLTLASSP 190 (266)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHhcCCCCcccccccchhHHHHHHHHHHHHHcCHHHHHHHHHhCc
Confidence 1 12456677778888842 234556778889999998887763
No 197
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=35.95 E-value=3.2e+02 Score=24.46 Aligned_cols=116 Identities=14% Similarity=0.112 Sum_probs=68.3
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~ 202 (385)
-++.+.+..-.. +...-..++.-+....++ +-.|... .+|.|+.|..+ .++.+...|...+..
T Consensus 9 yl~~Il~~~~~~-------~~~vr~~Al~~l~~il~q--GLvnP~~-----cvp~lIAL~ts---~~~~ir~~A~~~l~~ 71 (187)
T PF12830_consen 9 YLKNILELCLSS-------DDSVRLAALQVLELILRQ--GLVNPKQ-----CVPTLIALETS---PNPSIRSRAYQLLKE 71 (187)
T ss_pred HHHHHHHHHhCC-------CHHHHHHHHHHHHHHHhc--CCCChHH-----HHhHhhhhhCC---CChHHHHHHHHHHHH
Confidence 344555544433 556677788888888876 6666654 58999999876 478888888888888
Q ss_pred HhcCCccchhHhhC---CCcHHHHHHHhcCCCCHHH-----HHHHHHHHHHHhcCChhhHHHHH
Q 016639 203 LVHDVQSTETFRTG---GGPKLLVNILIDGNEDPEI-----LNSGFAVVAASATGNEVVKESYM 258 (385)
Q Consensus 203 L~~~~~~~~~i~~~---ggi~~Lv~lL~~~~~~~~v-----~~~a~~~L~~~~~~~e~nr~~iv 258 (385)
+.... +.+++. .|+..-.+.-+.-..+... ....+.-+..++.++-.+|..|+
T Consensus 72 l~eK~---~s~v~~~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~Fl 132 (187)
T PF12830_consen 72 LHEKH---ESLVESRYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKFL 132 (187)
T ss_pred HHHHh---HHHHHHHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHHH
Confidence 76654 455543 3454444443321111110 33444444455544555555553
No 198
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=34.99 E-value=2.5e+02 Score=30.76 Aligned_cols=133 Identities=16% Similarity=0.036 Sum_probs=89.7
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
.+++-|..++.+. +...+..+|..+-...+. .+ ...++.-.+|.|-.++.+. .+..+..+++-+++
T Consensus 389 ~IlplL~~S~~~~-------~~~iQ~~~L~~lptv~e~---iD--~~~vk~~ilP~l~~l~~~t--t~~~vkvn~L~c~~ 454 (700)
T KOG2137|consen 389 KILPLLYRSLEDS-------DVQIQELALQILPTVAES---ID--VPFVKQAILPRLKNLAFKT--TNLYVKVNVLPCLA 454 (700)
T ss_pred HHHHHHHHHhcCc-------chhhHHHHHHhhhHHHHh---cc--HHHHHHHHHHHhhcchhcc--cchHHHHHHHHHHH
Confidence 4555555555543 555666666666666553 22 3456666788888887665 47788888999999
Q ss_pred HHhcCCccchhHhhCCCcHHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh
Q 016639 202 LLVHDVQSTETFRTGGGPKLLVNILIDG-NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN 275 (385)
Q Consensus 202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~-~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~ 275 (385)
.++.. +-....++.+.-+++.. ..++.++-...++...+...+.. .+.++...++|.++-+.....-
T Consensus 455 ~l~q~------lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~-g~ev~~~~VlPlli~ls~~~~L 522 (700)
T KOG2137|consen 455 GLIQR------LDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYS-GVEVMAENVLPLLIPLSVAPSL 522 (700)
T ss_pred HHHHH------HHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc-ceeeehhhhhhhhhhhhhcccc
Confidence 88732 22334455566666554 56788888888888877776653 3678888999999988877654
No 199
>PHA01623 hypothetical protein
Probab=34.81 E-value=69 Score=23.21 Aligned_cols=33 Identities=15% Similarity=0.230 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHH
Q 016639 62 RTISQEAFDEVVKENMEDLGMEPTEALQDAIQTL 95 (385)
Q Consensus 62 ~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qf 95 (385)
-+|..+. ..-+.......+|+..|++++||..|
T Consensus 18 Vrldeel-~~~Ld~y~~~~g~~rSe~IreAI~~y 50 (56)
T PHA01623 18 IYMDKDL-KTRLKVYCAKNNLQLTQAIEEAIKEY 50 (56)
T ss_pred EEeCHHH-HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3466666 45567788888999999999999987
No 200
>TIGR02384 RelB_DinJ addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than Pfam model pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species.
Probab=34.79 E-value=88 Score=24.50 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHH-HHcCCCC
Q 016639 63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDL 102 (385)
Q Consensus 63 ~isqetfd~~v~eni~~f~m~~~eAl~~aI~qf-e~QGvdL 102 (385)
||..+. -+-..+-+++++|++.+|++-.+.|+ .-+|+.+
T Consensus 8 Rvd~~l-K~~a~~i~~~lGl~~s~ai~~fl~qvv~~~~lPF 47 (83)
T TIGR02384 8 RIDEEL-KKEAYAVFEELGLTPSTAIRMFLKQVIREQGLPF 47 (83)
T ss_pred eeCHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCC
Confidence 455555 45556668999999999999999999 4467654
No 201
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=34.75 E-value=1.5e+02 Score=24.41 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHHcc
Q 016639 231 EDPEILNSGFAVVAASATG-NEVVKESYMELKIDELILEILSR 272 (385)
Q Consensus 231 ~~~~v~~~a~~~L~~~~~~-~e~nr~~iv~~G~i~~Lv~lL~~ 272 (385)
++.++...++.+|...+.| +.+|+..+.+..+++.+..+|..
T Consensus 65 ~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 65 DNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 3556778888999999999 99999999999999999988854
No 202
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=34.39 E-value=38 Score=28.47 Aligned_cols=82 Identities=17% Similarity=0.251 Sum_probs=56.2
Q ss_pred cccCChhhhhHHhhhhhccCCCCCCCCCCcc-----ccccccccCCCcccCCCchhhhhhhHHHHHHHHHh--hHHhcCC
Q 016639 10 KHFSNSEQIDFQKQSSLITLPQPRAHPFVPK-----DHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKE--NMEDLGM 82 (385)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~isqetfd~~v~e--ni~~f~m 82 (385)
.++|.++-.|= +..+..-+-+|-+.+|||. +|.||.+. .+.+||.+-+|+.- |=+.|-.
T Consensus 11 r~l~eddkvq~-ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~-------------y~~~rE~i~~VIetll~~~~f~V 76 (130)
T COG5611 11 RFLSEDDKVQT-KAEQFFEELSQKGKLFIPEEVLIELVYVLEHG-------------YKWEREDIYEVIETLLNDELFNV 76 (130)
T ss_pred HHHhhhhhHHH-HHHHHHHhcCcCCCccchHHHHHHHHHHHHhc-------------chhhHHHHHHHHHHHhcccccee
Confidence 34565555554 2333444556678899997 45677553 66789998888763 5577889
Q ss_pred ChhHHHHHHHHHHHHcCCCCCCC
Q 016639 83 EPTEALQDAIQTLSLQGVDLSGI 105 (385)
Q Consensus 83 ~~~eAl~~aI~qfe~QGvdLsni 105 (385)
+..+++.+|++|...---|++.-
T Consensus 77 ~~~d~i~~A~~~Y~k~kadF~D~ 99 (130)
T COG5611 77 ELKDFIREAIKLYSKRKADFLDC 99 (130)
T ss_pred cchHHHHHHHHHHHhccccHHHH
Confidence 99999999999986544466543
No 203
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=34.17 E-value=3.3e+02 Score=24.03 Aligned_cols=89 Identities=15% Similarity=0.097 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCC-c-HH
Q 016639 144 NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGG-P-KL 221 (385)
Q Consensus 144 ~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~gg-i-~~ 221 (385)
.....++..+..+|.. .|.- + ...+|.+...|+. .++.+...|+..|+.|...+ ++.-.| + ..
T Consensus 3 ~vR~n~i~~l~DL~~r--~~~~----v-e~~~~~l~~~L~D---~~~~VR~~al~~Ls~Li~~d-----~ik~k~~l~~~ 67 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIR--YPNL----V-EPYLPNLYKCLRD---EDPLVRKTALLVLSHLILED-----MIKVKGQLFSR 67 (178)
T ss_pred HHHHHHHHHHHHHHHh--CcHH----H-HhHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHcC-----ceeehhhhhHH
Confidence 3456778888888886 4331 1 1347778888876 58899999999999998743 333222 2 56
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 016639 222 LVNILIDGNEDPEILNSGFAVVAASATG 249 (385)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~ 249 (385)
++.+|.+ ++++|...|..++..+..+
T Consensus 68 ~l~~l~D--~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 68 ILKLLVD--ENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHcC--CCHHHHHHHHHHHHHHHHh
Confidence 6677754 5788988888888877654
No 204
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=33.92 E-value=2.6e+02 Score=24.08 Aligned_cols=73 Identities=11% Similarity=0.013 Sum_probs=52.0
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
.|++.|+.-+... ++..+..+|.-|..+.+. -+..-...++..+-+..|+.++... .+..+...++..+-
T Consensus 41 ~a~ral~krl~~~-------n~~vql~AL~LLe~~vkN-CG~~fh~evas~~fl~~l~~l~~~~--~~~~Vk~kil~li~ 110 (142)
T cd03569 41 YAMRALKKRLLSK-------NPNVQLYALLLLESCVKN-CGTHFHDEVASREFMDELKDLIKTT--KNEEVRQKILELIQ 110 (142)
T ss_pred HHHHHHHHHHcCC-------ChHHHHHHHHHHHHHHHH-CCHHHHHHHhhHHHHHHHHHHHccc--CCHHHHHHHHHHHH
Confidence 6788888887654 788888888888887774 1344455667788889999988752 46677776666665
Q ss_pred HHh
Q 016639 202 LLV 204 (385)
Q Consensus 202 ~L~ 204 (385)
.-.
T Consensus 111 ~W~ 113 (142)
T cd03569 111 AWA 113 (142)
T ss_pred HHH
Confidence 543
No 205
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=32.82 E-value=1.7e+02 Score=25.16 Aligned_cols=67 Identities=22% Similarity=0.213 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 314 ARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 314 i~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+..|..-|.. .++.++..++..|..+..| ..+..+|.+.+-++.|+.++.. ..+..|.+.++.+|.+
T Consensus 43 ~ral~krl~~-~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~---~~~~~Vk~kil~li~~ 111 (142)
T cd03569 43 MRALKKRLLS-KNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKT---TKNEEVRQKILELIQA 111 (142)
T ss_pred HHHHHHHHcC-CChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcc---cCCHHHHHHHHHHHHH
Confidence 4555555555 3677777777777777766 4677888888888888887765 2333688888877753
No 206
>COG5589 Uncharacterized conserved protein [Function unknown]
Probab=32.57 E-value=30 Score=30.06 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=17.1
Q ss_pred CCChhHHHHHHHHHHHHcC
Q 016639 81 GMEPTEALQDAIQTLSLQG 99 (385)
Q Consensus 81 ~m~~~eAl~~aI~qfe~QG 99 (385)
+=.|.+|.+|||++||.||
T Consensus 94 dh~p~~afRea~Ka~ELq~ 112 (164)
T COG5589 94 DHLPDTAFREALKAFELQL 112 (164)
T ss_pred ccccHHHHHHHHHHHHHHh
Confidence 3468999999999999999
No 207
>KOG3946 consensus Glutaminyl cyclase [Posttranslational modification, protein turnover, chaperones]
Probab=31.92 E-value=31 Score=33.58 Aligned_cols=51 Identities=27% Similarity=0.465 Sum_probs=33.4
Q ss_pred chhhcccCChhhhhHHhhhh----------hccCCCCC-------CCCCCcccc-cccccc----CCCcccCCC
Q 016639 6 KSYYKHFSNSEQIDFQKQSS----------LITLPQPR-------AHPFVPKDH-PFFVRT----DLTAHEMGP 57 (385)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~-------~~~~~~~~~-~~~~~~----~~~~~~~~~ 57 (385)
..||++|.+ ...=|...|+ |.+.+.|| -+|+|-.+| |||+|. +.-+.+|++
T Consensus 232 p~f~~~~~~-t~~wF~Rl~~iE~~l~~~g~l~s~r~~~~~Fq~~~~~~~veDDHiPFlrrgVPVLHlI~~pFPs 304 (338)
T KOG3946|consen 232 PTFYNFFPN-TDRWFHRLQSIEGELALLGLLASHRLPPRYFQPGGLSSVVEDDHIPFLRRGVPVLHLIPVPFPS 304 (338)
T ss_pred hhHhhcCcc-hHHHHHHHHHHHHHHHHHHHHHhccCCchhccccCccccccCCcchhhhcCCceEEecCCCCcc
Confidence 468999988 4444444444 78889888 446677665 899886 444555554
No 208
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=31.59 E-value=2.4e+02 Score=25.60 Aligned_cols=139 Identities=15% Similarity=0.158 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCc----------
Q 016639 120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGS---------- 189 (385)
Q Consensus 120 v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d---------- 189 (385)
++..|+.|..+....+ ++.. .++ ...++.....+..++...|++..++.+|+......
T Consensus 2 v~~~l~~Li~f~~~~~--------~~~~-~~~---~~~~~~~~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~ 69 (207)
T PF01365_consen 2 VLKILRDLIKFCMGSE--------EEDQ-HLL---KQRNGQPNRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQ 69 (207)
T ss_dssp HHHHHHHHHHHHTTTS----------SS--SH---HCCCCHHHHHHHHHHHHTTHHHHHHHHHHHHCTS---------ST
T ss_pred HHHHHHHHHhHhCCCC--------cccc-hHH---HHhcCCcchhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcch
Confidence 5577888888887642 1111 111 11111013456678888999999999997654322
Q ss_pred -----HhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChH
Q 016639 190 -----KRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDE 264 (385)
Q Consensus 190 -----~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~ 264 (385)
..+...|.+.|..++.|+..++..+.. -++.++..+........+ .+..++..+-..|.+-...+.+. .|.
T Consensus 70 ~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~-~~~~l~~~~~~~~~~~~~--~~~d~l~~i~~dN~~L~~~i~e~-~I~ 145 (207)
T PF01365_consen 70 KDSSFKELFRLCYRLLRQFCRGNRENQKYLFK-HLDFLISIFMQLQIGYGL--GALDVLTEIFRDNPELCESISEE-HIE 145 (207)
T ss_dssp GGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH-HHH-----HHCCCH-TTH--HHHHHHHHHHTT---------------
T ss_pred hccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHhHHHHHHHHhhccCCc--hHHHHHHHHHHCcHHHHHHhhHH-HHH
Confidence 356778888888888876443332211 112112222210000011 12333444444454444444433 377
Q ss_pred HHHHHHccCC
Q 016639 265 LILEILSRQR 274 (385)
Q Consensus 265 ~Lv~lL~~~~ 274 (385)
.++++|+.++
T Consensus 146 ~~i~ll~~~g 155 (207)
T PF01365_consen 146 KFIELLRKHG 155 (207)
T ss_dssp ----------
T ss_pred HHHHHHHHcC
Confidence 7777777644
No 209
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=30.11 E-value=89 Score=31.19 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=55.9
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
..++.|.+.+.... +-.-++-|+..+-..-+. .|+.+..+.+.|+=..++.|+.+ +|+++.-.|+.|+-
T Consensus 356 ~i~k~L~~~lq~n~------~nt~i~vAc~Di~~~Vr~--~PE~~~vl~Kyg~k~~im~L~nh---~d~~VkfeAl~a~q 424 (432)
T COG5231 356 EIVKVLKKYLQSNN------PNTWICVACSDIFQLVRA--SPEINAVLSKYGVKEIIMNLINH---DDDDVKFEALQALQ 424 (432)
T ss_pred HHHHHHHHHHhcCC------CCceEeeeHhhHHHHHHh--CchHHHHHHHhhhHHHHHHHhcC---CCchhhHHHHHHHH
Confidence 56777777776541 112455667777777776 89999999999999999999998 58889988898887
Q ss_pred HHhc
Q 016639 202 LLVH 205 (385)
Q Consensus 202 ~L~~ 205 (385)
.+..
T Consensus 425 ~~i~ 428 (432)
T COG5231 425 TCIS 428 (432)
T ss_pred HHHh
Confidence 6643
No 210
>PF12960 DUF3849: Protein of unknown function (DUF3849); InterPro: IPR024383 This domain is found in a family of uncharacterised proteins found by clustering human gut metagenomic sequences [].
Probab=30.02 E-value=60 Score=27.98 Aligned_cols=28 Identities=18% Similarity=0.561 Sum_probs=24.8
Q ss_pred HHHHHHHHhhHHhcCCChhHHHHHHHHHH
Q 016639 67 EAFDEVVKENMEDLGMEPTEALQDAIQTL 95 (385)
Q Consensus 67 etfd~~v~eni~~f~m~~~eAl~~aI~qf 95 (385)
+++++++.++.+.+.|+ .+|+++-|++|
T Consensus 31 ~aIE~aI~~~~~~~~L~-~~a~~~vie~f 58 (133)
T PF12960_consen 31 EAIEQAIREHFDGNRLD-PDAVKEVIEKF 58 (133)
T ss_pred HHHHHHHHHHcCCCcCC-HHHHHHHHHHH
Confidence 67889999999999998 88899999887
No 211
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=29.98 E-value=28 Score=24.71 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=14.5
Q ss_pred HHHHHHHHHhh----------HHhcCCChhHHH
Q 016639 66 QEAFDEVVKEN----------MEDLGMEPTEAL 88 (385)
Q Consensus 66 qetfd~~v~en----------i~~f~m~~~eAl 88 (385)
+||.||.|+++ +..||.+-++|+
T Consensus 16 ~dtLDeli~~~~I~p~La~kVL~~FDksi~~~L 48 (49)
T PF02268_consen 16 TDTLDELIQEGKITPQLAMKVLEQFDKSINEAL 48 (49)
T ss_dssp HHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 67778888777 455555544444
No 212
>PF08563 P53_TAD: P53 transactivation motif; InterPro: IPR013872 The binding of this protein by regulatory proteins regulates p53 transcription activation. This entry is comprised of a single amphipathic alpha helix and contains a highly conserved motif [, ]. ; GO: 0005515 protein binding; PDB: 1YCQ_B 2Z5T_R 3DAB_B 3DAC_B 2Z5S_Q 2K8F_B 2L14_B 1YCR_B.
Probab=29.85 E-value=12 Score=22.65 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=7.4
Q ss_pred hhhhHHHHHHHH
Q 016639 62 RTISQEAFDEVV 73 (385)
Q Consensus 62 ~~isqetfd~~v 73 (385)
--.|||||...=
T Consensus 8 ~PLSQeTF~~LW 19 (25)
T PF08563_consen 8 LPLSQETFSDLW 19 (25)
T ss_dssp ---STCCHHHHH
T ss_pred CCccHHHHHHHH
Confidence 347999998753
No 213
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=29.39 E-value=2.6e+02 Score=23.59 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh--HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 314 ARALVHSLHAGLSSPSLISASIALKAVAVND--EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 314 i~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~--e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+..|-.-|+.. ++.++..++..|..+..|- .+...|.....+.-++.++... ...+..|.+.++.+|.+
T Consensus 39 ~raL~krl~~~-n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~-~~~~~~Vk~kil~ll~~ 109 (133)
T cd03561 39 ARAIRKKIKYG-NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS-PKYDPKVREKALELILA 109 (133)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHH
Confidence 44555555553 6777777777777777663 5778888877777777777653 12334677777777653
No 214
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=29.34 E-value=71 Score=26.55 Aligned_cols=38 Identities=13% Similarity=0.030 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcc
Q 016639 145 EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKM 185 (385)
Q Consensus 145 ~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~ 185 (385)
.+.+.+..|..++. .|+-...+++.|+++.|++||.+.
T Consensus 62 dLd~~Ik~l~~La~---~P~LYp~lv~l~~v~sL~~LL~He 99 (108)
T PF08216_consen 62 DLDEEIKKLSVLAT---APELYPELVELGAVPSLLGLLSHE 99 (108)
T ss_pred HHHHHHHHHHHccC---ChhHHHHHHHcCCHHHHHHHHCCC
Confidence 56678888888877 588888889999999999999763
No 215
>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle. This domain is predominantly found in fungi []. ; PDB: 1TTE_A.
Probab=28.83 E-value=13 Score=26.94 Aligned_cols=15 Identities=13% Similarity=0.333 Sum_probs=11.0
Q ss_pred HHHHHHHHHcCCCCC
Q 016639 89 QDAIQTLSLQGVDLS 103 (385)
Q Consensus 89 ~~aI~qfe~QGvdLs 103 (385)
++.|+||+++|++..
T Consensus 10 ~~lVd~F~~mGF~~d 24 (55)
T PF09288_consen 10 KDLVDQFENMGFERD 24 (55)
T ss_dssp HHHHHHHHHHT--HH
T ss_pred HHHHHHHHHcCCcHH
Confidence 578999999999553
No 216
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=28.54 E-value=2.2e+02 Score=24.63 Aligned_cols=67 Identities=21% Similarity=0.206 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 314 ARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 314 i~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+..|..-|.+ .++.++-.++..|..+..| ..+-.+|....-++-|+.++... .+..|.+.++.+|.+
T Consensus 39 ~ral~KRl~~-~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~---~~~~Vk~kil~li~~ 107 (144)
T cd03568 39 LKAIMKRLNH-KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR---VHPTVKEKLREVVKQ 107 (144)
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc---CCHHHHHHHHHHHHH
Confidence 4455555554 3677777777777777766 35778888888888888877663 333777777777753
No 217
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=28.51 E-value=5.3e+02 Score=24.69 Aligned_cols=137 Identities=9% Similarity=0.011 Sum_probs=85.1
Q ss_pred ChhhHHHHHHcCcHHHHHHHHhcccC--CcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhc--CCCCHHHHH
Q 016639 162 GSVNAAVATKNGGVELVCSICYKMRC--GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILID--GNEDPEILN 237 (385)
Q Consensus 162 ~~~~r~~~~~~Gaip~Lv~lL~~~~~--~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~--~~~~~~v~~ 237 (385)
+.++|....=.+..|.++..+..... .++ ....+...|+.++... ...++..++..... +.+..+-.+
T Consensus 100 ~~~~rll~~~la~LP~ll~~~d~~~~i~~~~-~~~~~A~~La~~a~~~-------~~~~La~il~~ya~~~fr~~~dfl~ 171 (262)
T PF14225_consen 100 DSQSRLLFLLLALLPRLLHAFDDPNPIQPDQ-ECIEIAEALAQVAEAQ-------GLPNLARILSSYAKGRFRDKDDFLS 171 (262)
T ss_pred CCCccHHHHHHHHHHHHHHHhcccccccccH-HHHHHHHHHHHHHHhC-------CCccHHHHHHHHHhcCCCCHHHHHH
Confidence 34457777666778888888776420 012 3334556777766432 12334444444432 344556677
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHH
Q 016639 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARAL 317 (385)
Q Consensus 238 ~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~L 317 (385)
..+..|+....-+- +...+..|+++|.++..-++......|+.|--.-|.|.+ .....|.||
T Consensus 172 ~v~~~l~~~f~P~~-------~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~-----------~~~dlispl 233 (262)
T PF14225_consen 172 QVVSYLREAFFPDH-------EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP-----------HGADLISPL 233 (262)
T ss_pred HHHHHHHHHhCchh-------HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC-----------cchHHHHHH
Confidence 77777776553111 123556789999998878888899999998765555543 223368999
Q ss_pred HHHHhcC
Q 016639 318 VHSLHAG 324 (385)
Q Consensus 318 v~lL~~~ 324 (385)
+++|+..
T Consensus 234 lrlL~t~ 240 (262)
T PF14225_consen 234 LRLLQTD 240 (262)
T ss_pred HHHhCCc
Confidence 9999775
No 218
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=28.33 E-value=1.7e+02 Score=24.18 Aligned_cols=41 Identities=24% Similarity=0.448 Sum_probs=31.2
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC
Q 016639 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK 261 (385)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G 261 (385)
||+.|++-|.+ .+.+|...|..+|..+|..+ .+.+.++...
T Consensus 9 ~i~lLv~QL~D--~~~~V~~~A~~iL~e~c~~~-~~le~~v~~~ 49 (115)
T PF14663_consen 9 GIELLVTQLYD--PSPEVVAAALEILEEACEDK-EYLEYLVSLR 49 (115)
T ss_pred HHHHHHHHhcC--CCHHHHHHHHHHHHHHHhch-hhHHHHHHcC
Confidence 57777777765 46799999999999999766 6667776543
No 219
>PRK14707 hypothetical protein; Provisional
Probab=28.09 E-value=1.3e+03 Score=29.23 Aligned_cols=216 Identities=14% Similarity=0.051 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHH
Q 016639 145 EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVN 224 (385)
Q Consensus 145 ~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~ 224 (385)
.++.+...|...... +.......+..++...+..|++- .+..+...|..+|+-=+.++.....-++...+-..++
T Consensus 222 ~c~~aa~~la~~l~~---~~~l~~~~~~q~va~~lN~lsKw--p~~~~C~~a~~~lA~rl~~~~~l~~al~~q~vanalN 296 (2710)
T PRK14707 222 DCGNAVSALAERLAD---ESRLRNELKPQELGNALNALSKW--ADTPVCAAAASALAERLVDDPGLRKALDPINVTQALN 296 (2710)
T ss_pred hHHHHHHHHHHHHcC---cHHHHHhCChHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHhhhHHHHHhcCHHHHHHHHh
Confidence 444555555555443 23333334444455555555554 2333344344444332221111122234445555566
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHhcCCCc-cchhhhhch
Q 016639 225 ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDD-DQVVASQVY 302 (385)
Q Consensus 225 lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~-~~~v~k~A~~aL~~Lt~~Dd-~rv~~g~a~ 302 (385)
-|+... +..+-..++..|..-.......++ -++.-++..++..|..- +..+-..|+-+|..=..+|+ .|.
T Consensus 297 alSKwp-d~~vc~~Aa~~la~rl~~d~~l~~-~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~------ 368 (2710)
T PRK14707 297 ALSKWA-DLPVCAEAAIALAERLADDPELCK-ALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRK------ 368 (2710)
T ss_pred hhhcCC-CchHHHHHHHHHHHHHhccHhhhh-ccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhc------
Confidence 666543 445544444444433333444433 34556677778888774 33566666655555444443 221
Q ss_pred hHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 016639 303 GYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSL 381 (385)
Q Consensus 303 ~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~ 381 (385)
=...-|+.-+++.|..-++..+...+..+|..=.+++ +.+..+ +.-|+.-++..+.+.++.. +-+++.+.
T Consensus 369 -----~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~-~~Q~van~lnalsKWPd~~---~C~~aa~~ 439 (2710)
T PRK14707 369 -----DLEPQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGL-DPQGVSNALNALAKWPDLP---ICGQAVSA 439 (2710)
T ss_pred -----ccchhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhc-chhhHHHHHHHhhcCCcch---hHHHHHHH
Confidence 1233466777777777556556666666665444444 566555 4567777778888877654 55555544
Q ss_pred H
Q 016639 382 L 382 (385)
Q Consensus 382 L 382 (385)
|
T Consensus 440 l 440 (2710)
T PRK14707 440 L 440 (2710)
T ss_pred H
Confidence 3
No 220
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=27.95 E-value=2.6e+02 Score=28.96 Aligned_cols=139 Identities=16% Similarity=0.182 Sum_probs=77.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHH---------HHHcCcHH-----HHHHHHhcccCCcHhHHHHHHHHHHHHhcCC
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAV---------ATKNGGVE-----LVCSICYKMRCGSKRVLDSCLKTMALLVHDV 207 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~---------~~~~Gaip-----~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~ 207 (385)
+.+.+...+..+..+|+. ....-.+ +..-|.+| .+|..|.+. .+-.++...+-+++.||+...
T Consensus 170 ~e~~i~~lv~~i~~iC~~--Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~vLCsi-~~~~~l~~~~w~~m~nL~~S~ 246 (464)
T PF11864_consen 170 DEDEISSLVDQICTICKS--TSSEDDIEACLSVLDAIITYGDIPSESLSPCIEVLCSI-VNSVSLCKPSWRTMRNLLKSH 246 (464)
T ss_pred CHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHHHHhhH-hcccccchhHHHHHHHHHcCc
Confidence 567888889999999986 2221111 12233332 344433222 122344455566666665422
Q ss_pred ccchhHhhCCCcHHHHHHHhc----CCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CC--ChHHHHHHHccCChHHHHH
Q 016639 208 QSTETFRTGGGPKLLVNILID----GNEDPEILNSGFAVVAASATGNEVVKESYME-LK--IDELILEILSRQRNDSIQS 280 (385)
Q Consensus 208 ~~~~~i~~~ggi~~Lv~lL~~----~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~-~G--~i~~Lv~lL~~~~~~v~k~ 280 (385)
.....+..|+.+|.. ..++..+.+-|...+..+..++.+++..-+. .- +++.+..+|+..+..+--+
T Consensus 247 ------~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~e 320 (464)
T PF11864_consen 247 ------LGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYE 320 (464)
T ss_pred ------cHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHH
Confidence 122356788888832 2345667778888888888777444332222 22 7888888888766534444
Q ss_pred HHHHHHHhc
Q 016639 281 LYDAIRVLL 289 (385)
Q Consensus 281 A~~aL~~Lt 289 (385)
....+.+|-
T Consensus 321 Il~~i~~ll 329 (464)
T PF11864_consen 321 ILLLINRLL 329 (464)
T ss_pred HHHHHHHHH
Confidence 444444443
No 221
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=27.77 E-value=2e+02 Score=31.81 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH---HHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHH
Q 016639 314 ARALVHSLHAGLSSPSLISASI---ALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL 382 (385)
Q Consensus 314 i~~Lv~lL~~~~~~~v~~~a~~---aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~L 382 (385)
+.+++..|+.+..+ ....|. -|..=++.+.|+..+-+.|+++.+++++.++..+.+-.+...++..|
T Consensus 334 ~~yiLStlq~~~~~--m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMyl 403 (865)
T KOG2152|consen 334 LEYILSTLQSALLP--METRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYL 403 (865)
T ss_pred HHHHHhhhhhcccc--HHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 67788888775322 122331 12223456899999999999999999999887777666666655543
No 222
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=27.32 E-value=3.8e+02 Score=23.59 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=26.5
Q ss_pred HHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh----HHHHHHHHcCcHHHHHHHHHh
Q 016639 308 FAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND----EICKSVAENGGIDALLRCIDD 365 (385)
Q Consensus 308 I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~----e~c~~I~e~GGl~~Lv~ll~~ 365 (385)
+...|.++..++.+....|..++.+++.++.+.-..+ +.|..+ +|.+..++.+
T Consensus 24 ~W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~~l-----LP~i~~LL~S 80 (164)
T PF13925_consen 24 FWRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCVDL-----LPLIEELLQS 80 (164)
T ss_pred HHhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHHHH-----HHHHHHHHhC
Confidence 3344555555555555445556566655555333222 344433 3555555554
No 223
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=27.06 E-value=3.2e+02 Score=23.49 Aligned_cols=69 Identities=17% Similarity=0.215 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHHHHHHHHhcC--CcCcHHHHHHHHHHHh
Q 016639 314 ARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSG--LQGNKTVARICCSLLS 383 (385)
Q Consensus 314 i~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~Lv~ll~~~~--~~~~~~v~k~a~~~Lr 383 (385)
+..|..-|.+. ++.++-.++.+|..+..| ..+..+|...+-+.-++.++...+ ...+..|....+.+|.
T Consensus 40 ~rai~krl~~~-n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~ 112 (139)
T cd03567 40 VRLLAHKIQSP-QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLY 112 (139)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHH
Confidence 45555556543 676777777777777765 467788888888888888875421 1233478888887775
No 224
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.99 E-value=2.8e+02 Score=30.44 Aligned_cols=146 Identities=12% Similarity=0.057 Sum_probs=87.7
Q ss_pred HHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 016639 167 AVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAAS 246 (385)
Q Consensus 167 ~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~ 246 (385)
.-+...|++-++|.-|.. .-.+|...|...+..|.... +.|.. .++++|+..+.+ +...|.-.+..+|..+
T Consensus 367 ~siI~sGACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ss---P~FA~-~aldfLvDMfND--E~~~VRL~ai~aL~~I 437 (823)
T KOG2259|consen 367 ESIIPSGACGALVHGLED---EFYEVRRAAVASLCSLATSS---PGFAV-RALDFLVDMFND--EIEVVRLKAIFALTMI 437 (823)
T ss_pred cccccccccceeeeechH---HHHHHHHHHHHHHHHHHcCC---CCcHH-HHHHHHHHHhcc--HHHHHHHHHHHHHHHH
Confidence 345667888888887764 24578888888888887754 33332 357888888865 3445555667777665
Q ss_pred hcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-
Q 016639 247 ATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL- 325 (385)
Q Consensus 247 ~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~- 325 (385)
+. | ..++..-++.+.+.|...+.++.++.-..|.+.-..|-.- | .-++..|+..|..++
T Consensus 438 s~-~-----l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~d~~~------------i--~m~v~~lL~~L~kyPq 497 (823)
T KOG2259|consen 438 SV-H-----LAIREEQLRQILESLEDRSVDVREALRELLKNARVSDLEC------------I--DMCVAHLLKNLGKYPQ 497 (823)
T ss_pred HH-H-----heecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCcHHH------------H--HHHHHHHHHHhhhCCC
Confidence 42 2 2223445678889998888666665555555443332211 1 113566666776665
Q ss_pred CHHHHHHHHHHHHHhhcCh
Q 016639 326 SSPSLISASIALKAVAVND 344 (385)
Q Consensus 326 ~~~v~~~a~~aL~~La~~~ 344 (385)
|. .++...+..++.++
T Consensus 498 Dr---d~i~~cm~~iGqnH 513 (823)
T KOG2259|consen 498 DR---DEILRCMGRIGQNH 513 (823)
T ss_pred Cc---HHHHHHHHHHhccC
Confidence 43 23344566666554
No 225
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=26.94 E-value=7.4e+02 Score=25.79 Aligned_cols=154 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCC--------CHHHHHHHHHHHHHHh
Q 016639 176 ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNE--------DPEILNSGFAVVAASA 247 (385)
Q Consensus 176 p~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~--------~~~v~~~a~~~L~~~~ 247 (385)
..+++.|... ........+|.++.-|+.+.+.-+-+....-+..|+.+-+-... +..++..++.+|.|+.
T Consensus 48 e~i~~Vle~~--~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 48 ERIFEVLENG--EPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHhcC--CCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Q ss_pred cCChhhHHHHHhCCChHHHHHHHccCCh-----HHHHHHHHHHHHhc-CCCccchhhhhchhHHHHHHhcCcHHHHHHHH
Q 016639 248 TGNEVVKESYMELKIDELILEILSRQRN-----DSIQSLYDAIRVLL-TPDDDQVVASQVYGYARRFAKIGIARALVHSL 321 (385)
Q Consensus 248 ~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-----~v~k~A~~aL~~Lt-~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL 321 (385)
......++.+.+......+.+.+..... .+.--=...|.-|+ ..-|.|.. .+++.+|++.+.+.|
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsq---------l~~~l~Gl~~lt~~l 196 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQ---------LIAELLGLELLTNWL 196 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHH---------HHHHhcccHHHHHHh
Q ss_pred hcCC--CH---------HHHHHHHHHHHHh
Q 016639 322 HAGL--SS---------PSLISASIALKAV 340 (385)
Q Consensus 322 ~~~~--~~---------~v~~~a~~aL~~L 340 (385)
.... ++ .-...+|.+|..+
T Consensus 197 ed~lgidse~n~~~l~pqe~n~a~EaLK~~ 226 (532)
T KOG4464|consen 197 EDKLGIDSEINVPPLNPQETNRACEALKVF 226 (532)
T ss_pred hccccCCCCcCCCCCCHHHHHHHHHHHHHH
No 226
>PF13040 DUF3901: Protein of unknown function (DUF3901)
Probab=26.89 E-value=44 Score=22.67 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=15.9
Q ss_pred HHHHHHHHhhHHhcCCChh
Q 016639 67 EAFDEVVKENMEDLGMEPT 85 (385)
Q Consensus 67 etfd~~v~eni~~f~m~~~ 85 (385)
-||.+.|+||-.++--+++
T Consensus 6 ~sFeeLV~eNK~ell~d~~ 24 (40)
T PF13040_consen 6 KSFEELVRENKQELLNDKE 24 (40)
T ss_pred cCHHHHHHHHHHHHHcCHH
Confidence 4799999999888877664
No 227
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=2.3e+02 Score=31.47 Aligned_cols=84 Identities=14% Similarity=0.202 Sum_probs=53.9
Q ss_pred cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (385)
Q Consensus 189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~ 268 (385)
+.+|...|.-+|+-++..+ ..-++..+++|..+ -++-|..-++-+|.-.|+|.- ++.+| .|++
T Consensus 568 nDDVrRaAVialGFVl~~d--------p~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG-~~eAi-------~lLe 630 (929)
T KOG2062|consen 568 NDDVRRAAVIALGFVLFRD--------PEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG-LKEAI-------NLLE 630 (929)
T ss_pred chHHHHHHHHHheeeEecC--------hhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC-cHHHH-------HHHh
Confidence 4456666666666555443 34567788899864 478898889999999998865 55655 2333
Q ss_pred HHccCC-hHHHHHHHHHHHHhc
Q 016639 269 ILSRQR-NDSIQSLYDAIRVLL 289 (385)
Q Consensus 269 lL~~~~-~~v~k~A~~aL~~Lt 289 (385)
-|-++. +-|++.||-++.-+.
T Consensus 631 pl~~D~~~fVRQgAlIa~amIm 652 (929)
T KOG2062|consen 631 PLTSDPVDFVRQGALIALAMIM 652 (929)
T ss_pred hhhcChHHHHHHHHHHHHHHHH
Confidence 333333 346667777766654
No 228
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=26.54 E-value=3.5e+02 Score=21.94 Aligned_cols=66 Identities=11% Similarity=-0.022 Sum_probs=44.5
Q ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 316 ALVHSLHAGL--SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 316 ~Lv~lL~~~~--~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
.+..+|+=+. +......++..|..|+..+.-.+.+.+.|+..++-++- ...+ .......=.++.+|
T Consensus 31 Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr-~~~~---~~~~~~id~il~~l 98 (98)
T PF14726_consen 31 LLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR-PNVE---PNLQAEIDEILDQL 98 (98)
T ss_pred HHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH-hcCC---HHHHHHHHHHHhcC
Confidence 3444444443 33466788999999999888999999999999976644 3222 24566665565543
No 229
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=26.16 E-value=9.1e+02 Score=26.60 Aligned_cols=171 Identities=16% Similarity=0.123 Sum_probs=95.6
Q ss_pred HhHHHHHHHHHHHHhcCCccchhHhh-CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHH
Q 016639 190 KRVLDSCLKTMALLVHDVQSTETFRT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILE 268 (385)
Q Consensus 190 ~~vl~~Al~aLa~L~~~~~~~~~i~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~ 268 (385)
.+.+-+|+-.|..++........+.+ ..|-.++..++.....++..+-.++|+|.|+. .|...++.++.. ...+..
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~~~an~ll~vR~L~N~f-~~~~g~~~~~s~--~~~i~~ 634 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNADPANQLLVVRCLANLF-SNPAGRELFMSR--LESILD 634 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccccchhHHHHHHHHHHHhc-cCHHHHHHHHHH--HHHHhh
Confidence 44555555555554443322222222 23334444555443345667778899999965 568888887754 333333
Q ss_pred HH---ccCCh-HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH---hcCcHHHHHHHHhcCCC--HHH--HHHHHHHH
Q 016639 269 IL---SRQRN-DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA---KIGIARALVHSLHAGLS--SPS--LISASIAL 337 (385)
Q Consensus 269 lL---~~~~~-~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~---e~Ggi~~Lv~lL~~~~~--~~v--~~~a~~aL 337 (385)
.+ ++.+. .++...+....|++. ..+- +.|+.+.|..++..... ++. .-.++.||
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv---------------~l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~Al 699 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSV---------------LLIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVAL 699 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHH---------------HHHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHH
Confidence 32 22221 344433333333331 0111 24677777776655432 122 22456688
Q ss_pred HHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHH
Q 016639 338 KAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSL 381 (385)
Q Consensus 338 ~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~ 381 (385)
.+|+..+....++...-.++-+..-+++..+.+ ..+.++..
T Consensus 700 gtL~t~~~~~~~~A~~~~v~sia~~~~~~~~~~---~~k~~a~~ 740 (745)
T KOG0301|consen 700 GTLMTVDASVIQLAKNRSVDSIAKKLKEAVSNP---SGKNIARD 740 (745)
T ss_pred HhhccccHHHHHHHHhcCHHHHHHHHHHhccCc---hhhHHHHH
Confidence 888888889999999899999998888854443 55555544
No 230
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.15 E-value=6.7e+02 Score=26.52 Aligned_cols=147 Identities=18% Similarity=0.148 Sum_probs=77.5
Q ss_pred CCcHHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHhc---
Q 016639 217 GGPKLLVNILID--GNEDPEILNSGFAVVAASATGNE-VVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLL--- 289 (385)
Q Consensus 217 ggi~~Lv~lL~~--~~~~~~v~~~a~~~L~~~~~~~e-~nr~~iv~~G~i~~Lv~lL~~~-~~~v~k~A~~aL~~Lt--- 289 (385)
|-+.-++..|.. ..++..+...+|+.|.+.+++.+ ..+. ...-.+..++.-|-.+ ..+|+-++..+|..++
T Consensus 254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~t--h~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~ 331 (533)
T KOG2032|consen 254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRT--HKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA 331 (533)
T ss_pred ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHH--hHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence 445555555532 23466788899999999999833 3322 2233455555555444 3478888877777664
Q ss_pred CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHH---HHHHHHHhhcCh--HHHHHHHHcCcHHHHHHHHH
Q 016639 290 TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS---ASIALKAVAVND--EICKSVAENGGIDALLRCID 364 (385)
Q Consensus 290 ~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~---a~~aL~~La~~~--e~c~~I~e~GGl~~Lv~ll~ 364 (385)
.++|.+- ++.+ +.-.+..+..+- ++.+..+ +++.|..++.+. ++=.+.+.-++.++++. +.
T Consensus 332 ~~~~l~~----------~~l~--ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllh-l~ 397 (533)
T KOG2032|consen 332 SNDDLES----------YLLN--IALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLH-LQ 397 (533)
T ss_pred hhcchhh----------hchh--HHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceee-eC
Confidence 4444321 1111 112222222222 3334433 455666677653 33333444455555544 33
Q ss_pred hcCCcCcHHHHHHHHHHHh
Q 016639 365 DSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 365 ~~~~~~~~~v~k~a~~~Lr 383 (385)
+ .|..++++|=+.+|
T Consensus 398 d----~~p~va~ACr~~~~ 412 (533)
T KOG2032|consen 398 D----PNPYVARACRSELR 412 (533)
T ss_pred C----CChHHHHHHHHHHH
Confidence 3 34477777766655
No 231
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=26.12 E-value=3.3e+02 Score=27.26 Aligned_cols=56 Identities=16% Similarity=0.239 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCc
Q 016639 314 ARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQ 369 (385)
Q Consensus 314 i~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~ 369 (385)
++.+++-|.......++..++.-|..-+.+++|+..+-+.|..+.+++.+.+.++.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d 78 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDD 78 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccch
Confidence 67788888743345677777777877788999999999999999999999764444
No 232
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.92 E-value=1.1e+03 Score=27.27 Aligned_cols=74 Identities=8% Similarity=-0.002 Sum_probs=41.7
Q ss_pred HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (385)
Q Consensus 175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (385)
++.+.-.+++ +.--+.+.|||.++..+.- +......=..+.+...+.|.. ..+-.|...|+-+|......++..
T Consensus 464 v~hVfP~f~s---~~g~Lrarac~vl~~~~~~-df~d~~~l~~ale~t~~~l~~-d~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 464 VNHVFPEFQS---PYGYLRARACWVLSQFSSI-DFKDPNNLSEALELTHNCLLN-DNELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred HHHhhHhhcC---chhHHHHHHHHHHHHHHhc-cCCChHHHHHHHHHHHHHhcc-CCcCchhhHHHHHHHHHHhcchhh
Confidence 3444444554 3456788999999988732 111222223456667777764 234455666666776655544444
No 233
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=25.39 E-value=4.2e+02 Score=22.75 Aligned_cols=70 Identities=19% Similarity=0.196 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHH-HHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 314 ARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDA-LLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 314 i~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~-Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+..|-.=|..+.++.++..++..|..+..| ..+-.+|..-+-++- |+.++..... .+..|.+.++.+|..
T Consensus 40 ~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~-~~~~Vk~kil~li~~ 112 (141)
T cd03565 40 VRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNN-PPTIVQEKVLALIQA 112 (141)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCC-CcHHHHHHHHHHHHH
Confidence 344444444334666666677677777665 367778887777875 7777753222 223677777777653
No 234
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=25.38 E-value=6e+02 Score=24.25 Aligned_cols=134 Identities=10% Similarity=0.133 Sum_probs=77.1
Q ss_pred CcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 016639 188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL 267 (385)
Q Consensus 188 ~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv 267 (385)
+|..+...|++.|+.++..-+ ++.++..-+..|++.+.+.-++......++..+..+.....-.. +....++
T Consensus 11 ed~~~R~ka~~~Ls~vL~~lp--~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~------~~~~~i~ 82 (262)
T PF14500_consen 11 EDPIIRAKALELLSEVLERLP--PDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP------ESAVKIL 82 (262)
T ss_pred CCHHHHHHHHHHHHHHHHhCC--HhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh------hhHHHHH
Confidence 577888889999998877543 45566666788888776655666666666777766653322111 1122333
Q ss_pred HHH-ccCCh-----HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh--cCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 016639 268 EIL-SRQRN-----DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLHAGLSSPSLISASIALKA 339 (385)
Q Consensus 268 ~lL-~~~~~-----~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e--~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~ 339 (385)
..+ +.... ..+..+...|..|..+ |...+.. .+-+..+++++..-+||.-+--++..+..
T Consensus 83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~------------~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~ 150 (262)
T PF14500_consen 83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLEN------------HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKV 150 (262)
T ss_pred HHHHHhCChhhhhHHHHHHHHHHHHHHHHH------------hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 332 22221 4455566667766521 1112322 23567777777766677655566666655
Q ss_pred hh
Q 016639 340 VA 341 (385)
Q Consensus 340 La 341 (385)
+.
T Consensus 151 i~ 152 (262)
T PF14500_consen 151 IL 152 (262)
T ss_pred HH
Confidence 54
No 235
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=24.89 E-value=6.3e+02 Score=24.35 Aligned_cols=135 Identities=13% Similarity=0.198 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh----HHH-HHHHHHHHHhcCCCccchhhhhchhHHHHH
Q 016639 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSI-QSLYDAIRVLLTPDDDQVVASQVYGYARRF 308 (385)
Q Consensus 234 ~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~----~v~-k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I 308 (385)
.-++.++..+.-++. |++-|..|+++.+.--|.-.|...+. +-. -...+++..|.-.||.. -...+
T Consensus 65 nRVcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~e--------vi~fL 135 (262)
T PF04078_consen 65 NRVCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPE--------VISFL 135 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HH--------HHHHH
T ss_pred HHHHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHH--------HHHHH
Confidence 446677777777765 89999999999987767666655432 333 34788999998777643 34566
Q ss_pred HhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh----HHHHHHHHc----CcHHHHHHHHHhcCCcCcHHHHHHHHH
Q 016639 309 AKIGIARALVHSLHAGLSSPSLISASIALKAVAVND----EICKSVAEN----GGIDALLRCIDDSGLQGNKTVARICCS 380 (385)
Q Consensus 309 ~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~----e~c~~I~e~----GGl~~Lv~ll~~~~~~~~~~v~k~a~~ 380 (385)
.+...+|..++.|..++ .-.+.-+...+.++-.++ -+|+.-... -.+..++.-|.. .++..+.|..+.
T Consensus 136 l~tEiiplcLr~me~Gs-elSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~---~pS~RLLKhIIr 211 (262)
T PF04078_consen 136 LQTEIIPLCLRIMEFGS-ELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVK---QPSPRLLKHIIR 211 (262)
T ss_dssp HCTTHHHHHHHHHHHS--HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHH---S--HHHHHHHHH
T ss_pred HhhchHHHHHHHHHhcc-HHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHcc---CCChhHHHHHHH
Confidence 68899999999999874 322233444555554332 123222222 244455554444 334466666655
Q ss_pred H
Q 016639 381 L 381 (385)
Q Consensus 381 ~ 381 (385)
+
T Consensus 212 C 212 (262)
T PF04078_consen 212 C 212 (262)
T ss_dssp H
T ss_pred H
Confidence 4
No 236
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=24.82 E-value=2.6e+02 Score=23.01 Aligned_cols=84 Identities=15% Similarity=0.251 Sum_probs=55.3
Q ss_pred HHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHH--hhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcC
Q 016639 96 SLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQL--DLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNG 173 (385)
Q Consensus 96 e~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~--l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~G 173 (385)
|-+..+|-|-.+.-++... ...-|..+++-|... ... .....+.+.+...+..|.+.|.+ +..+|...+++..
T Consensus 22 Eghn~~lQnylR~Q~~~~~-s~nlV~~~~~ll~~l~~~~~---~~~~~~~~~~~q~~~tL~E~iQG-PC~eNQ~~l~~s~ 96 (109)
T PF08454_consen 22 EGHNLDLQNYLRQQPNNKN-SYNLVSETVDLLDSLQEFGK---DINSDNIELIIQCFDTLTEFIQG-PCIENQIALANSK 96 (109)
T ss_pred CcCCHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHcC-CCHHhHHHHHHcc
Confidence 5566666666666554321 112333444444442 010 01223678899999999999998 8899999999999
Q ss_pred cHHHHHHHHhc
Q 016639 174 GVELVCSICYK 184 (385)
Q Consensus 174 aip~Lv~lL~~ 184 (385)
.+..+..+|.+
T Consensus 97 ~~~~i~~lL~~ 107 (109)
T PF08454_consen 97 FLDIINDLLSK 107 (109)
T ss_pred HHHHHHHHHhh
Confidence 99999998864
No 237
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=24.10 E-value=2.2e+02 Score=27.55 Aligned_cols=32 Identities=6% Similarity=0.007 Sum_probs=24.4
Q ss_pred CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCC
Q 016639 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDV 207 (385)
Q Consensus 173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~ 207 (385)
.-+..+++-|.. ++......|+++|..++.|.
T Consensus 60 ~~i~~ll~~L~~---~~~~~R~~al~~LlYi~~G~ 91 (293)
T PF07923_consen 60 DFIEKLLDQLES---SDSEDRLEALRALLYIAQGT 91 (293)
T ss_pred HHHHHHHHhccc---cchhhHHHHHHHHHHHHcCC
Confidence 345567777766 47777789999999999885
No 238
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=23.98 E-value=3e+02 Score=29.63 Aligned_cols=153 Identities=18% Similarity=0.220 Sum_probs=78.4
Q ss_pred hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCCh----HHHHHHHccC-ChHHHHHHHHH
Q 016639 211 ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME-LKID----ELILEILSRQ-RNDSIQSLYDA 284 (385)
Q Consensus 211 ~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~-~G~i----~~Lv~lL~~~-~~~v~k~A~~a 284 (385)
++....|-++.+++-+++ ++.+++..++..|..+.......-.++.+ ...+ .-|++.-.+- .....+..|..
T Consensus 41 ed~~lk~dLellVeriqd--~d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~y~dl~~iydkw~~~n~K~~LaDi 118 (881)
T COG5110 41 EDAMLKGDLELLVERIQD--PDIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPNYLDLLEIYDKWLEGNKKRWLADI 118 (881)
T ss_pred hhhhhcccHHHHHHHhhC--CChHHHHHHHHHHHHHHhccccccccCCchhhhcCCCcchHHHHHhhccCcchhhHHHHH
Confidence 455667778999998886 57889999888887765332221111111 0011 1112222111 11344558999
Q ss_pred HHHhcCCCcc---------chh------hhhchhHHHHHHhcCcHHHHHHHHhc--CCC-HHHHHHHHHHH-HHhhcCh-
Q 016639 285 IRVLLTPDDD---------QVV------ASQVYGYARRFAKIGIARALVHSLHA--GLS-SPSLISASIAL-KAVAVND- 344 (385)
Q Consensus 285 L~~Lt~~Dd~---------rv~------~g~a~~~a~~I~e~Ggi~~Lv~lL~~--~~~-~~v~~~a~~aL-~~La~~~- 344 (385)
|+.|++.++. |++ -+-.|++.|.++ |.|.-.-.-=.. .+. ..+ .++|..+ --+-..|
T Consensus 119 lS~l~m~yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa--~eI~ev~n~~~e~daps~~dt-~~l~l~ivpfflkHNa 195 (881)
T COG5110 119 LSALCMVYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLA--GEIAEVKNDQNEMDAPSFADT-RDLGLEIVPFFLKHNA 195 (881)
T ss_pred HHHHeeecccccchhhHHHHhhcccCCHHHHHHHHHHHHH--HHHHHHhcchhhccCCchhHH-HHHHHHHhHHHHhccc
Confidence 9999876665 111 011356666664 223322221000 001 122 2333222 1222222
Q ss_pred --HHHHHHHHcCcHHHHHHHHHhcCC
Q 016639 345 --EICKSVAENGGIDALLRCIDDSGL 368 (385)
Q Consensus 345 --e~c~~I~e~GGl~~Lv~ll~~~~~ 368 (385)
+-..-.+|.|||+.+++....+..
T Consensus 196 E~dAiDlL~Evg~Iekv~~fVd~~n~ 221 (881)
T COG5110 196 EFDAIDLLVEVGGIEKVLDFVDTHNY 221 (881)
T ss_pred chHHHHHHHHhcchhhhhhhhcccch
Confidence 455788899999999998877543
No 239
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=23.72 E-value=9.8e+02 Score=26.13 Aligned_cols=143 Identities=15% Similarity=0.086 Sum_probs=69.5
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
+++..++.++.+. +++.-.....++.+.++.++.. +.+..... -++..|-.+|+++ .....=.|++.|.
T Consensus 260 q~~~q~rpfL~~w---ls~k~emV~lE~Ar~v~~~~~~--nv~~~~~~---~~vs~L~~fL~s~---rv~~rFsA~Riln 328 (898)
T COG5240 260 QALLQLRPFLNSW---LSDKFEMVFLEAARAVCALSEE--NVGSQFVD---QTVSSLRTFLKST---RVVLRFSAMRILN 328 (898)
T ss_pred HHHHHHHHHHHHH---hcCcchhhhHHHHHHHHHHHHh--ccCHHHHH---HHHHHHHHHHhcc---hHHHHHHHHHHHH
Confidence 3455566666543 2222233445556665555443 21111111 1244444455542 3445667888888
Q ss_pred HHhcCCccchhHhhCC-CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH
Q 016639 202 LLVHDVQSTETFRTGG-GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280 (385)
Q Consensus 202 ~L~~~~~~~~~i~~~g-gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~ 280 (385)
.|....+ +.+.-++ -++-| +.+ .+..|...|.-.|. -+|++++...+|. .|+..++=+..+- ..-
T Consensus 329 ~lam~~P--~kv~vcN~evEsL---Isd--~Nr~IstyAITtLL--KTGt~e~idrLv~--~I~sfvhD~SD~F---KiI 394 (898)
T COG5240 329 QLAMKYP--QKVSVCNKEVESL---ISD--ENRTISTYAITTLL--KTGTEETIDRLVN--LIPSFVHDMSDGF---KII 394 (898)
T ss_pred HHHhhCC--ceeeecChhHHHH---hhc--ccccchHHHHHHHH--HcCchhhHHHHHH--HHHHHHHhhccCc---eEE
Confidence 8776543 2222221 23332 222 34456556666664 3688888887774 4555554443332 222
Q ss_pred HHHHHHHhc
Q 016639 281 LYDAIRVLL 289 (385)
Q Consensus 281 A~~aL~~Lt 289 (385)
+..+||.|+
T Consensus 395 ~ida~rsLs 403 (898)
T COG5240 395 AIDALRSLS 403 (898)
T ss_pred eHHHHHHHH
Confidence 444555554
No 240
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=23.56 E-value=1.2e+02 Score=27.52 Aligned_cols=100 Identities=10% Similarity=0.204 Sum_probs=42.7
Q ss_pred HhhCCCcHHHHHHHhcCCCC----------------HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChH
Q 016639 213 FRTGGGPKLLVNILIDGNED----------------PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRND 276 (385)
Q Consensus 213 i~~~ggi~~Lv~lL~~~~~~----------------~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~ 276 (385)
+.+.|.++.++++|+...+. .++...+++.|...|.+|.+|+..+.+. ++.++..+......
T Consensus 39 lrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~ 116 (207)
T PF01365_consen 39 LRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIG 116 (207)
T ss_dssp HHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhcc
Confidence 34667777777777653322 3678899999999999999998887753 33333333221110
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcC
Q 016639 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG 324 (385)
Q Consensus 277 v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~ 324 (385)
.--.+..+|..+-.|+.. . ...+.+ .-|..++++|+.+
T Consensus 117 ~~~~~~d~l~~i~~dN~~-L--------~~~i~e-~~I~~~i~ll~~~ 154 (207)
T PF01365_consen 117 YGLGALDVLTEIFRDNPE-L--------CESISE-EHIEKFIELLRKH 154 (207)
T ss_dssp TTHHHHHHHHHHHTT---------------------------------
T ss_pred CCchHHHHHHHHHHCcHH-H--------HHHhhH-HHHHHHHHHHHHc
Confidence 001234445555433221 0 112222 3488888888884
No 241
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=23.47 E-value=1.8e+02 Score=22.71 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHhhHHhcCCChhHHHHHHHHHH-HHcCCCCC
Q 016639 64 ISQEAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDLS 103 (385)
Q Consensus 64 isqetfd~~v~eni~~f~m~~~eAl~~aI~qf-e~QGvdLs 103 (385)
|..+. -+-..+-.++++|++.+|++-...|. ..+|+.++
T Consensus 8 iD~~l-K~~A~~vl~~lGls~S~Ai~~fl~qi~~~~~iPF~ 47 (80)
T PRK11235 8 VDDEL-KARAYAVLEKLGVTPSEALRLLLQYVAENGRLPFK 47 (80)
T ss_pred eCHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCCCCC
Confidence 44444 33344558899999999999999998 55777664
No 242
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=23.47 E-value=7.7e+02 Score=24.84 Aligned_cols=51 Identities=18% Similarity=0.139 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHH
Q 016639 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAI 285 (385)
Q Consensus 231 ~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL 285 (385)
..+=+...|++.+..- .+.-.++.+. +++|.++..|++.+..|..-|+.+|
T Consensus 320 ~~piLka~aik~~~~F--r~~l~~~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 320 SHPILKADAIKFLYTF--RNQLPKEQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp S-HHHHHHHHHHHHHH--GGGS-HHHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHH--HhhCCHHHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 3455678888888753 3344455554 5899999999988865555566553
No 243
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=23.34 E-value=1.1e+03 Score=26.73 Aligned_cols=140 Identities=14% Similarity=0.119 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhccc---CC---cHhHHHHHHHHHHHHhcCCccchhH-hhCC
Q 016639 145 EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR---CG---SKRVLDSCLKTMALLVHDVQSTETF-RTGG 217 (385)
Q Consensus 145 ~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~---~~---d~~vl~~Al~aLa~L~~~~~~~~~i-~~~g 217 (385)
.+.+-+..|+....+ ++-.|.-=--..|+..+..+|+... .+ +.+.+-.++++|-++.+..=--..+ ....
T Consensus 157 ~l~~CleslRVsL~~--npVSwvn~Fgvegl~ll~~~Lkrl~dsk~~~~~~~k~~~eiIrClka~mNn~~Gl~~vL~~e~ 234 (1102)
T KOG1924|consen 157 KLLECLESLRVSLTS--NPVSWVNKFGVEGLGLLLDVLKRLRDSKVGSKLDIKNLQEIIRCLKAFMNNKFGLVLVLRRER 234 (1102)
T ss_pred cHHHHHHHHhhhhcC--CccHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccccceeeeecCCc
Confidence 344445566665554 4444442211223444444444311 11 2233334445555444321111222 2344
Q ss_pred CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHH--------HHhCC---ChHHHHHHHccCChHHHHHHHHHHH
Q 016639 218 GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKES--------YMELK---IDELILEILSRQRNDSIQSLYDAIR 286 (385)
Q Consensus 218 gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~--------iv~~G---~i~~Lv~lL~~~~~~v~k~A~~aL~ 286 (385)
++-.+...|.- ..+.+...+.+.++.+|.-.+++... +.+.. -..+||+.|........+-||.-+.
T Consensus 235 ~lllla~aldp--r~pnmm~dvvkllsalciV~ee~~~ekvl~aiT~~ae~~~veRF~piv~gl~~~e~~~l~vacmq~I 312 (1102)
T KOG1924|consen 235 SLLLLARALDP--REPNMMTDVVKLLSALCIVGEENGLEKVLEAITTIAEAKPVERFRPIVEGLDFLEKQQLQVACMQFI 312 (1102)
T ss_pred cHHHHHHhcCc--cCccHHHHHHHHHHHHheeehhhHHHHHHHHHHHHHhhcchhhhhhHHHHHhccchHHHHHHHHHHH
Confidence 55555555543 34557778888898888877665332 22222 2357888888776444444666555
Q ss_pred Hh
Q 016639 287 VL 288 (385)
Q Consensus 287 ~L 288 (385)
|-
T Consensus 313 Na 314 (1102)
T KOG1924|consen 313 NA 314 (1102)
T ss_pred HH
Confidence 53
No 244
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=22.72 E-value=1.1e+03 Score=26.17 Aligned_cols=172 Identities=10% Similarity=-0.001 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~ 221 (385)
+..+..+=+..|..+-.. -..|.... -..|.|++.|.... -.....+....++ .+.+ +...+..-.+.
T Consensus 286 dn~qKs~Flk~Ls~~ip~---fp~rv~~~--kiLP~L~~el~n~~--~vp~~LP~v~~i~---~~~s--~~~~~~~~~p~ 353 (700)
T KOG2137|consen 286 DNSQKSSFLKGLSKLIPT---FPARVLFQ--KILPTLVAELVNTK--MVPIVLPLVLLIA---EGLS--QNEFGPKMLPA 353 (700)
T ss_pred CcHHHHHHHHHHHHhhcc---CCHHHHHH--hhhhHHHHHhcccc--ccccccchhhhhh---hccc--hhhhhhhhhHH
Confidence 445556666667777663 55566554 37888888774310 0111112222222 2211 22233444555
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhc
Q 016639 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV 301 (385)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a 301 (385)
|..+++. ....++ .+..+.+.-..-+.-...-+...++|.|...++..+..+|..+...+-..+.-=| +
T Consensus 354 l~pi~~~-~~~~~~---~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD--~----- 422 (700)
T KOG2137|consen 354 LKPIYSA-SDPKQA---LLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESID--V----- 422 (700)
T ss_pred HHHHhcc-CCcccc---hhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc--H-----
Confidence 5555553 111111 1111211100001111223344566777777776665555555544444432222 1
Q ss_pred hhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 302 ~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
..++.-++|.|-.+-..+.+..++.+++.++..+.
T Consensus 423 -----~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~ 457 (700)
T KOG2137|consen 423 -----PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI 457 (700)
T ss_pred -----HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH
Confidence 24555667777766333335566677777777766
No 245
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=22.60 E-value=49 Score=25.04 Aligned_cols=23 Identities=22% Similarity=0.403 Sum_probs=17.7
Q ss_pred hhHHhcCCChhHHHHHHHHHHHH
Q 016639 75 ENMEDLGMEPTEALQDAIQTLSL 97 (385)
Q Consensus 75 eni~~f~m~~~eAl~~aI~qfe~ 97 (385)
+.+..-++.|+.+++++|++|..
T Consensus 47 ~~l~~~~l~pn~~Lk~~I~~~~~ 69 (73)
T PF04564_consen 47 QPLSESDLIPNRALKSAIEEWCA 69 (73)
T ss_dssp SB-SGGGSEE-HHHHHHHHHHHH
T ss_pred CcCCcccceECHHHHHHHHHHHH
Confidence 34777789999999999999954
No 246
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=22.45 E-value=51 Score=21.62 Aligned_cols=17 Identities=41% Similarity=0.718 Sum_probs=13.8
Q ss_pred hHHhcCCChhHHHHHHH
Q 016639 76 NMEDLGMEPTEALQDAI 92 (385)
Q Consensus 76 ni~~f~m~~~eAl~~aI 92 (385)
|-+-|+++||+|++-.|
T Consensus 17 ~pe~l~LtpEDAvEaLi 33 (35)
T PF08383_consen 17 NPEALGLTPEDAVEALI 33 (35)
T ss_pred ChhhcCCCHHHHHHHHh
Confidence 44668999999998776
No 247
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=22.27 E-value=4.9e+02 Score=27.94 Aligned_cols=67 Identities=12% Similarity=0.197 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
.|++.+..+++.. +......+++.|-.+|+. ++++..-+ ..+|+++|.+ ++..-+...=++|.
T Consensus 59 ~Ai~a~~DLcEDe-------d~~iR~~aik~lp~~ck~--~~~~v~kv-----aDvL~QlL~t---dd~~E~~~v~~sL~ 121 (556)
T PF05918_consen 59 EAINAQLDLCEDE-------DVQIRKQAIKGLPQLCKD--NPEHVSKV-----ADVLVQLLQT---DDPVELDAVKNSLM 121 (556)
T ss_dssp HHHHHHHHHHT-S-------SHHHHHHHHHHGGGG--T----T-HHHH-----HHHHHHHTT------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-------cHHHHHHHHHhHHHHHHh--HHHHHhHH-----HHHHHHHHhc---ccHHHHHHHHHHHH
Confidence 6777777777665 777888999999999996 66655443 5678888886 34443444445555
Q ss_pred HHhc
Q 016639 202 LLVH 205 (385)
Q Consensus 202 ~L~~ 205 (385)
.|..
T Consensus 122 ~ll~ 125 (556)
T PF05918_consen 122 SLLK 125 (556)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 248
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.11 E-value=7.1e+02 Score=24.76 Aligned_cols=146 Identities=16% Similarity=0.233 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhHHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHH
Q 016639 65 SQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLN 144 (385)
Q Consensus 65 sqetfd~~v~eni~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~ 144 (385)
++|+ ++-+|+..|+ +|+.||++|..++.+-.|.. ++ ..+..+.+|..+ ..+
T Consensus 71 ~~e~---~~sk~l~~fd-~p~~al~~~l~~L~s~dW~~-~v-------------dgLn~irrLs~f-----------h~e 121 (334)
T KOG2933|consen 71 SVEY---IVSKNLSPFD-DPEAALKQALKKLSSDDWED-KV-------------DGLNSIRRLSEF-----------HPE 121 (334)
T ss_pred cHHH---hhhcccCccC-cHHHHHHHHHHHhchHHHHH-Hh-------------hhHHHHHHHHhh-----------hHH
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHH
Q 016639 145 EMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVN 224 (385)
Q Consensus 145 ~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~ 224 (385)
.+...|.++.-.--+ +--|..-.+-.-++-.+=.+.++. +..+....=..+..|+........|+-.++-..|..
T Consensus 122 ~l~~~L~~vii~vvk--slKNlRS~VsraA~~t~~difs~l---n~~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~a 196 (334)
T KOG2933|consen 122 SLNPMLHEVIIAVVK--SLKNLRSAVSRAACMTLADIFSSL---NNSIDQELDDLVTQLLHKASQDNRFVREDAEKALVA 196 (334)
T ss_pred HHHHHHHHHHHHHHH--HhcChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHH
Q ss_pred HHhcCCCCHHHHHHHHHHHHH
Q 016639 225 ILIDGNEDPEILNSGFAVVAA 245 (385)
Q Consensus 225 lL~~~~~~~~v~~~a~~~L~~ 245 (385)
+... -....++.--.-.+++
T Consensus 197 MV~~-vtp~~~L~~L~~~~~~ 216 (334)
T KOG2933|consen 197 MVNH-VTPQKLLRKLIPILQH 216 (334)
T ss_pred HHhc-cChHHHHHHHHHHHhh
No 249
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=22.00 E-value=9.5e+02 Score=25.33 Aligned_cols=142 Identities=11% Similarity=0.089 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHH----HHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLD----SCL 197 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~----~Al 197 (385)
+.|..+.+.++.. .+...-.-+|+.|+..|+. .++ |.. ...--++...|....+.+.++.. .|+
T Consensus 329 ~iL~~l~EvL~d~------~~~~~k~laLrvL~~ml~~--Q~~-~l~---DstE~ai~K~Leaa~ds~~~v~~~Aeed~~ 396 (516)
T KOG2956|consen 329 EILLLLLEVLSDS------EDEIIKKLALRVLREMLTN--QPA-RLF---DSTEIAICKVLEAAKDSQDEVMRVAEEDCL 396 (516)
T ss_pred HHHHHHHHHHccc------hhhHHHHHHHHHHHHHHHh--chH-hhh---chHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 3455555555431 1344556788999999985 232 322 22233344444433223443322 334
Q ss_pred HHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHHHccCCh
Q 016639 198 KTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME--LKIDELILEILSRQRN 275 (385)
Q Consensus 198 ~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~--~G~i~~Lv~lL~~~~~ 275 (385)
.+|+...- ...|..+..++-. .+......++..+..++-. -.+..+.. -.+.|.+++.-.+.+.
T Consensus 397 ~~las~~P----------~~~I~~i~~~Ilt--~D~~~~~~~iKm~Tkl~e~--l~~EeL~~ll~diaP~~iqay~S~SS 462 (516)
T KOG2956|consen 397 TTLASHLP----------LQCIVNISPLILT--ADEPRAVAVIKMLTKLFER--LSAEELLNLLPDIAPCVIQAYDSTSS 462 (516)
T ss_pred HHHHhhCc----------hhHHHHHhhHHhc--CcchHHHHHHHHHHHHHhh--cCHHHHHHhhhhhhhHHHHHhcCchH
Confidence 44443211 1123334444443 3445555555555555432 12233332 3578888888888877
Q ss_pred HHHHHHHHHHHHhc
Q 016639 276 DSIQSLYDAIRVLL 289 (385)
Q Consensus 276 ~v~k~A~~aL~~Lt 289 (385)
.|+|.|..+|-.+.
T Consensus 463 ~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 463 TVRKTAVFCLVAMV 476 (516)
T ss_pred HhhhhHHHhHHHHH
Confidence 89999988888774
No 250
>PF04181 RPAP2_Rtr1: Rtr1/RPAP2 family; InterPro: IPR007308 This entry represents a domain found in PAP2 (RNAP II associated polypeptide) protein and the yeast Rtr1 proteins. Its function is not known however it is thought to be a zinc finger.
Probab=21.53 E-value=54 Score=25.24 Aligned_cols=17 Identities=29% Similarity=0.604 Sum_probs=13.5
Q ss_pred hhhhhhHHHHHHHHHhh
Q 016639 60 TVRTISQEAFDEVVKEN 76 (385)
Q Consensus 60 ~~~~isqetfd~~v~en 76 (385)
|++-+++++||+||.|=
T Consensus 1 m~~~l~~~~y~dvv~ER 17 (79)
T PF04181_consen 1 MLRFLQPSDYDDVVEER 17 (79)
T ss_pred CcccCCHHHHHHHHHHH
Confidence 45678999999998773
No 251
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=21.24 E-value=1.3e+03 Score=26.81 Aligned_cols=67 Identities=19% Similarity=0.345 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcH---hHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHH
Q 016639 149 LFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSK---RVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNI 225 (385)
Q Consensus 149 al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~---~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~l 225 (385)
.||.|+.+|+. +..-.+.-+...|-+++.. ++ .+....|++|-.++.+. +..+...+.+++.++
T Consensus 617 ~L~iLq~lCrd------~~vsvrk~~~~Sltel~~~----~pr~~~~~~~wl~~li~~~~d~---es~v~e~a~~~i~k~ 683 (1529)
T KOG0413|consen 617 VLSILQMLCRD------RMVSVRKTGADSLTELMLR----DPRLFSLSSKWLHTLISMLNDT---ESDVTEHARKLIMKV 683 (1529)
T ss_pred HHHHHHHHhcC------cchHHHHHHHHHHHHHHhh----CchhhhhhHHHHHHHHHHHhcc---HHHHHHHHHHHHHHH
Confidence 39999999996 3333334456667777664 33 34567788888888765 455566677777777
Q ss_pred Hhc
Q 016639 226 LID 228 (385)
Q Consensus 226 L~~ 228 (385)
|.-
T Consensus 684 l~p 686 (1529)
T KOG0413|consen 684 LTP 686 (1529)
T ss_pred Hhh
Confidence 654
No 252
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=20.99 E-value=2.4e+02 Score=27.32 Aligned_cols=62 Identities=13% Similarity=-0.047 Sum_probs=40.7
Q ss_pred hHHHHHHHccCChHHHHHHHHHHHHhcCCCcc--c---hhhhhchhHHHHHHhcCcHHHHHHHHhcC
Q 016639 263 DELILEILSRQRNDSIQSLYDAIRVLLTPDDD--Q---VVASQVYGYARRFAKIGIARALVHSLHAG 324 (385)
Q Consensus 263 i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~--r---v~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~ 324 (385)
+..+++-|........-+|+.+|.-++.+-=. . ........|+..+.+.||+++|+++|+..
T Consensus 62 i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~ 128 (293)
T PF07923_consen 62 IEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMF 128 (293)
T ss_pred HHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 34677777776555666788888888643210 0 00111237788888999999999999874
No 253
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=20.83 E-value=4.4e+02 Score=27.98 Aligned_cols=143 Identities=8% Similarity=-0.016 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHHH-hCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcH
Q 016639 236 LNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIA 314 (385)
Q Consensus 236 ~~~a~~~L~~~~~~~e~nr~~iv-~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi 314 (385)
..+|.+.+.... -|+--|+.+. -......++..|.+....++..++|++.|++-.--.+.|.-.+ ...|.+.. -|
T Consensus 408 ~~aA~Ra~~VyV-LHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s-~~eR~sg~--ll 483 (728)
T KOG4535|consen 408 KAAASRALGVYV-LHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDS-FQERFSGL--LL 483 (728)
T ss_pred HHHHHhhceeEE-eccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchH-HHHHHHHH--HH
Confidence 334444444322 2333333222 2344455555555544467777999999986211111111000 11222221 24
Q ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHh----cCCcCcHHHHHHHHHHHhcC
Q 016639 315 RALVHSLHAGL--SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDD----SGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 315 ~~Lv~lL~~~~--~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~----~~~~~~~~v~k~a~~~Lr~l 385 (385)
..++.+..... +..|..++..+|.++. .+-+.|.++|--+.+...+.. -+-..+..|...+|-+|.||
T Consensus 484 ~~~~~~A~~~~Ad~dkV~~navraLgnll---Qvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNL 557 (728)
T KOG4535|consen 484 LKMLRSAIEASADKDKVKSNAVRALGNLL---QFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNL 557 (728)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHHHHhhHH---HHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHh
Confidence 44444444332 2367888888888874 234444444433333322222 22234457888888888775
No 254
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.67 E-value=5.7e+02 Score=28.92 Aligned_cols=65 Identities=15% Similarity=0.174 Sum_probs=49.2
Q ss_pred HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-------hHHHHHHHHcCcHHHHHHHHHhcCCcC
Q 016639 306 RRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-------DEICKSVAENGGIDALLRCIDDSGLQG 370 (385)
Q Consensus 306 ~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-------~e~c~~I~e~GGl~~Lv~ll~~~~~~~ 370 (385)
..|.+...|+.+++++.-..++.++.++-.+|..++.. +++.++++.-..++.|+..|=......
T Consensus 184 q~l~d~~li~kll~ll~ps~~~~~qsna~~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml~~~~s~ 255 (838)
T KOG2073|consen 184 QWLNDQELIPKLLELLNPSKDPDVQSNAGQTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIMLEDGTSL 255 (838)
T ss_pred HHHhhHHHHHHHHHHhCCccccchhHHHHHHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHccCCcch
Confidence 34446678999999997765677888887788777654 578899999999999988876643333
No 255
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=20.51 E-value=5.5e+02 Score=22.05 Aligned_cols=73 Identities=10% Similarity=-0.031 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcc---cCCcHhHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKM---RCGSKRVLDSCLK 198 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~---~~~d~~vl~~Al~ 198 (385)
.|++.|+.-+... ++..+.-||.-|..+-+. =+..-...++..+.+.-|+.++... ...+..|....+.
T Consensus 38 ~a~rai~krl~~~-------n~~v~l~AL~LLe~~vkN-CG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~ 109 (139)
T cd03567 38 LAVRLLAHKIQSP-------QEKEALQALTVLEACMKN-CGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIE 109 (139)
T ss_pred HHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHH-cCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHH
Confidence 6778888887765 778888888888877764 2455556677778888899988531 1135667765555
Q ss_pred HHHH
Q 016639 199 TMAL 202 (385)
Q Consensus 199 aLa~ 202 (385)
.+-.
T Consensus 110 li~~ 113 (139)
T cd03567 110 LLYS 113 (139)
T ss_pred HHHH
Confidence 5444
No 256
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=20.49 E-value=5.2e+02 Score=21.69 Aligned_cols=75 Identities=8% Similarity=-0.044 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
.+++.|+.-+... ++..+..+|.-|..+.+. -+..-...++....+..|+.++......+..+...++..+-
T Consensus 37 ~a~raL~krl~~~-------n~~vql~AL~lLd~~vkN-cg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~ 108 (133)
T cd03561 37 EAARAIRKKIKYG-------NPHVQLLALTLLELLVKN-CGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELIL 108 (133)
T ss_pred HHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHh-CChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 6788888887654 788999999999988886 23335556666667777888887532246778777777666
Q ss_pred HHh
Q 016639 202 LLV 204 (385)
Q Consensus 202 ~L~ 204 (385)
...
T Consensus 109 ~W~ 111 (133)
T cd03561 109 AWS 111 (133)
T ss_pred HHH
Confidence 554
No 257
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=20.39 E-value=68 Score=26.47 Aligned_cols=30 Identities=30% Similarity=0.526 Sum_probs=25.4
Q ss_pred hHHHHHHHHHhh----------HHhcCCChhHHHHHHHHH
Q 016639 65 SQEAFDEVVKEN----------MEDLGMEPTEALQDAIQT 94 (385)
Q Consensus 65 sqetfd~~v~en----------i~~f~m~~~eAl~~aI~q 94 (385)
=|+|.||.|.++ ++.||-+-++|+++-++.
T Consensus 16 L~~tLDe~v~~g~itp~la~~VL~~FDKSi~~al~~~vk~ 55 (109)
T KOG3463|consen 16 LQKTLDELVSDGVITPSLAKKVLEQFDKSINEALNDKVKN 55 (109)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 489999999998 788999999998887754
No 258
>PF04221 RelB: RelB antitoxin; InterPro: IPR007337 Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. Several toxin/antitoxin pairs may occur in a single species. RelE and RelB form a toxin-antitoxin system; RelE represses translation, probably through binding ribosomes [, ]. RelB stably binds RelE, presumably deactivating it.; PDB: 2KC8_B 2K29_A.
Probab=20.23 E-value=1.9e+02 Score=22.38 Aligned_cols=39 Identities=21% Similarity=0.412 Sum_probs=26.5
Q ss_pred hhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHH-HHcCCCC
Q 016639 63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTL-SLQGVDL 102 (385)
Q Consensus 63 ~isqetfd~~v~eni~~f~m~~~eAl~~aI~qf-e~QGvdL 102 (385)
||..+. -+-..+-+++++|++.+|++--+.|. .-+|+.+
T Consensus 7 Rid~~l-K~~a~~il~~~Glt~s~ai~~fl~qiv~~~~iPF 46 (83)
T PF04221_consen 7 RIDEEL-KEEAEAILEELGLTLSDAINMFLKQIVREGGIPF 46 (83)
T ss_dssp EE-HHH-HHHHHHHHHHTT--HHHHHHHHHHHHHHHSS-S-
T ss_pred EcCHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCc
Confidence 455555 44556678999999999999999998 5577765
No 259
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=20.22 E-value=1.5e+03 Score=26.96 Aligned_cols=241 Identities=15% Similarity=0.119 Sum_probs=127.4
Q ss_pred hhcccCChhhhhHHhhhh--------hccCCCCCCC-CCCccccccccccCCCcccCCCchhhhhhhHHHHHHHHHhhHH
Q 016639 8 YYKHFSNSEQIDFQKQSS--------LITLPQPRAH-PFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENME 78 (385)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~isqetfd~~v~eni~ 78 (385)
|+-|+.++.+-+.+++.= +.|.-.|--. =|+-|-.|-|.+--++. +-+.-..+-.+||.
T Consensus 466 Y~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~------------~~~~vRiayAsnla 533 (1431)
T KOG1240|consen 466 YFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDS------------SAQIVRIAYASNLA 533 (1431)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccC------------ccceehhhHHhhHH
Confidence 889999988888776543 3333333322 33333344444322221 11112455667777
Q ss_pred hcCCChhHHHHHH--HHHHHHcCCCCCCCccCCCCCCC-CCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHH
Q 016639 79 DLGMEPTEALQDA--IQTLSLQGVDLSGIVKCVPGESS-LKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIE 155 (385)
Q Consensus 79 ~f~m~~~eAl~~a--I~qfe~QGvdLsni~~~~~~~~~-~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~ 155 (385)
.|. .-|.+=. .++....|++=.--....+.... ...+.+...++.....+-.+ ...-.-+..++.|..
T Consensus 534 ~LA---~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd------~~~~Vkr~Lle~i~~ 604 (1431)
T KOG1240|consen 534 QLA---KTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD------SPPIVKRALLESIIP 604 (1431)
T ss_pred HHH---HHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC------CchHHHHHHHHHHHH
Confidence 773 3344322 33334455531111112222222 23345556666666655433 233455566677777
Q ss_pred HhcCCCChhhHHHHHHcCc----HHHHHHHHhcccCCcHhHHHHHHHHHHHHh--cCCccchhHhhCCCcHHHHHHHhcC
Q 016639 156 LCGGNEGSVNAAVATKNGG----VELVCSICYKMRCGSKRVLDSCLKTMALLV--HDVQSTETFRTGGGPKLLVNILIDG 229 (385)
Q Consensus 156 lc~~~~~~~~r~~~~~~Ga----ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~--~~~~~~~~i~~~ggi~~Lv~lL~~~ 229 (385)
+|. ++++.+. ++.|+..|.. .|..+...-...+..++ .|. .-++..-+|+|.+-|.+.
T Consensus 605 LC~---------FFGk~ksND~iLshLiTfLND---kDw~LR~aFfdsI~gvsi~VG~----rs~seyllPLl~Q~ltD~ 668 (1431)
T KOG1240|consen 605 LCV---------FFGKEKSNDVILSHLITFLND---KDWRLRGAFFDSIVGVSIFVGW----RSVSEYLLPLLQQGLTDG 668 (1431)
T ss_pred HHH---------HhhhcccccchHHHHHHHhcC---ccHHHHHHHHhhccceEEEEee----eeHHHHHHHHHHHhccCc
Confidence 764 3444443 4555555543 35555555555555332 221 224566678888888763
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 230 NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 230 ~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
.+-|+..++.++.-+|..+--.|..+.+ .++.+.-+|-+.+.=+.+.+|..|....
T Consensus 669 --EE~Viv~aL~~ls~Lik~~ll~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 669 --EEAVIVSALGSLSILIKLGLLRKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIA 724 (1431)
T ss_pred --chhhHHHHHHHHHHHHHhcccchHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHH
Confidence 4567888888888877544334444433 4455555555666667778888888775
No 260
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=20.11 E-value=6.5e+02 Score=22.73 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 315 ~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
..|+.+|....+..++..++..|..|..+.++-+- ..|-+..++.-++..-.+.|..+.-.++.++.
T Consensus 104 ~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL--~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~ 170 (182)
T PF13251_consen 104 RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRL--PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLG 170 (182)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhc--CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 45667777655666888899999998876544332 23666666655554444444456655555543
Done!