Query 016639
Match_columns 385
No_of_seqs 222 out of 601
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 16:58:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ul1_B Importin subunit alpha- 100.0 3.7E-33 1.3E-37 287.7 22.8 340 10-384 65-475 (510)
2 3tpo_A Importin subunit alpha- 100.0 3.3E-32 1.1E-36 281.5 25.0 347 10-384 84-494 (529)
3 3nmz_A APC variant protein; pr 100.0 9.9E-29 3.4E-33 252.0 14.8 224 142-385 213-448 (458)
4 3nmw_A APC variant protein; AR 99.9 6.4E-26 2.2E-30 224.3 19.3 223 142-385 97-332 (354)
5 3nmw_A APC variant protein; AR 99.9 7.4E-25 2.5E-29 216.7 18.9 225 142-385 45-290 (354)
6 1xm9_A Plakophilin 1; armadill 99.9 5.2E-25 1.8E-29 224.1 17.9 343 12-385 12-447 (457)
7 4b8j_A Importin subunit alpha- 99.9 7.3E-25 2.5E-29 225.0 19.0 336 11-385 83-441 (528)
8 4hxt_A De novo protein OR329; 99.9 1.1E-23 3.9E-28 193.4 24.9 235 123-385 3-239 (252)
9 3nmz_A APC variant protein; pr 99.9 7.6E-25 2.6E-29 223.4 15.8 223 144-385 163-406 (458)
10 4db8_A Armadillo-repeat protei 99.9 2.3E-23 7.8E-28 192.8 22.1 234 124-385 14-249 (252)
11 3now_A UNC-45 protein, SD10334 99.9 3.5E-24 1.2E-28 230.9 18.3 343 11-385 256-650 (810)
12 1xm9_A Plakophilin 1; armadill 99.9 5.4E-23 1.9E-27 209.2 22.6 233 124-385 4-358 (457)
13 1wa5_B Importin alpha subunit; 99.9 1.9E-23 6.5E-28 214.9 18.1 335 12-385 97-455 (530)
14 1xqr_A HSPBP1 protein; armadil 99.9 3.4E-22 1.2E-26 193.0 23.0 226 142-384 53-284 (296)
15 4db6_A Armadillo repeat protei 99.9 3.7E-22 1.3E-26 179.9 21.1 195 172-385 11-207 (210)
16 2jdq_A Importin alpha-1 subuni 99.9 3E-22 1E-26 199.5 22.0 344 12-385 30-441 (450)
17 3l6x_A Catenin delta-1; cateni 99.9 5.1E-23 1.7E-27 215.1 16.7 345 12-385 58-474 (584)
18 3ul1_B Importin subunit alpha- 99.9 9.1E-22 3.1E-26 202.7 25.3 237 123-385 58-301 (510)
19 4b8j_A Importin subunit alpha- 99.9 5.1E-22 1.7E-26 203.8 22.9 332 16-384 132-493 (528)
20 3tpo_A Importin subunit alpha- 99.9 1.5E-21 5.2E-26 201.6 26.5 239 122-385 119-404 (529)
21 3now_A UNC-45 protein, SD10334 99.9 4E-22 1.4E-26 214.8 22.3 235 122-385 495-735 (810)
22 3tt9_A Plakophilin-2; cell adh 99.9 3.4E-22 1.2E-26 186.6 14.6 196 174-385 9-227 (233)
23 3l6x_A Catenin delta-1; cateni 99.9 2.5E-21 8.5E-26 202.3 22.6 262 101-385 31-382 (584)
24 1wa5_B Importin alpha subunit; 99.9 2.2E-21 7.5E-26 199.5 21.7 332 15-384 144-507 (530)
25 4db6_A Armadillo repeat protei 99.9 1.4E-20 4.9E-25 169.5 22.4 193 126-342 16-209 (210)
26 1jdh_A Beta-catenin; beta-cate 99.9 1E-20 3.5E-25 192.5 21.6 247 122-385 266-528 (529)
27 2z6h_A Catenin beta-1, beta-ca 99.8 3.6E-20 1.2E-24 195.4 20.8 313 34-385 180-525 (644)
28 4db8_A Armadillo-repeat protei 99.8 8.9E-20 3E-24 168.6 19.8 196 123-342 55-251 (252)
29 3tt9_A Plakophilin-2; cell adh 99.8 3.9E-20 1.3E-24 172.6 16.9 195 124-343 10-230 (233)
30 2z6g_A B-catenin; FULL-length, 99.8 5.7E-20 2E-24 198.7 19.7 313 34-385 316-661 (780)
31 4hxt_A De novo protein OR329; 99.8 2E-19 6.8E-24 165.0 19.8 194 173-385 2-197 (252)
32 2jdq_A Importin alpha-1 subuni 99.8 2.5E-18 8.5E-23 171.1 27.2 237 122-385 107-345 (450)
33 1jdh_A Beta-catenin; beta-cate 99.8 4.5E-19 1.6E-23 180.3 21.9 237 122-385 17-254 (529)
34 1xqr_A HSPBP1 protein; armadil 99.8 2.6E-19 9E-24 172.8 17.5 181 189-385 53-236 (296)
35 2z6h_A Catenin beta-1, beta-ca 99.8 2.5E-18 8.6E-23 181.3 21.5 236 123-385 15-251 (644)
36 2z6g_A B-catenin; FULL-length, 99.8 2.1E-17 7.4E-22 178.6 21.6 237 122-385 150-387 (780)
37 3opb_A SWI5-dependent HO expre 99.7 6.3E-16 2.1E-20 164.7 20.2 325 36-385 334-726 (778)
38 3opb_A SWI5-dependent HO expre 99.6 2.8E-15 9.4E-20 159.8 17.6 241 119-385 331-633 (778)
39 3grl_A General vesicular trans 99.2 8.3E-10 2.8E-14 115.3 21.8 216 123-353 123-354 (651)
40 3grl_A General vesicular trans 99.2 1.9E-09 6.5E-14 112.6 23.2 265 84-382 35-337 (651)
41 4gmo_A Putative uncharacterize 98.8 1E-08 3.4E-13 109.2 11.3 197 170-384 31-255 (684)
42 3ltm_A Alpha-REP4; protein eng 98.6 3.7E-06 1.3E-10 75.0 18.5 182 123-385 20-201 (211)
43 4gmo_A Putative uncharacterize 98.5 2.8E-07 9.6E-12 98.0 10.6 182 142-340 47-256 (684)
44 3ltj_A Alpharep-4; protein eng 98.5 1.6E-05 5.4E-10 70.2 19.1 183 122-385 14-196 (201)
45 1oyz_A Hypothetical protein YI 98.5 1.1E-05 3.6E-10 75.2 18.7 130 123-289 24-156 (280)
46 1oyz_A Hypothetical protein YI 98.3 6.8E-05 2.3E-09 69.7 20.3 208 122-385 54-280 (280)
47 3ltm_A Alpha-REP4; protein eng 98.1 4.9E-05 1.7E-09 67.6 14.4 152 172-384 18-169 (211)
48 3ltj_A Alpharep-4; protein eng 98.1 0.00015 5.2E-09 63.8 16.5 178 77-341 20-197 (201)
49 4fdd_A Transportin-1; heat rep 97.9 9.1E-05 3.1E-09 79.9 14.7 336 12-385 23-427 (852)
50 1ho8_A Vacuolar ATP synthase s 97.8 0.00026 8.9E-09 71.6 15.0 232 144-384 183-473 (480)
51 2vgl_B AP-2 complex subunit be 97.5 0.0021 7.2E-08 66.7 16.0 145 123-289 122-267 (591)
52 4fdd_A Transportin-1; heat rep 97.4 0.0039 1.3E-07 67.1 17.0 230 122-384 215-468 (852)
53 2vgl_B AP-2 complex subunit be 97.3 0.007 2.4E-07 62.8 17.8 203 142-384 62-265 (591)
54 1b3u_A Protein (protein phosph 97.3 0.0068 2.3E-07 61.3 16.7 174 142-341 177-352 (588)
55 3dad_A FH1/FH2 domain-containi 97.2 0.021 7.3E-07 55.2 18.7 178 142-331 131-325 (339)
56 1b3u_A Protein (protein phosph 97.2 0.0085 2.9E-07 60.5 16.3 182 173-385 402-585 (588)
57 1w63_A Adapter-related protein 96.9 0.17 5.7E-06 52.7 23.7 169 142-344 83-265 (618)
58 3dad_A FH1/FH2 domain-containi 96.9 0.049 1.7E-06 52.6 17.7 191 177-377 122-326 (339)
59 1te4_A Conserved protein MTH18 96.8 0.00014 4.9E-09 60.2 -0.7 119 173-339 12-130 (131)
60 1ibr_B P95, importin beta-1 su 96.6 0.016 5.3E-07 56.7 12.2 183 142-343 230-438 (462)
61 3b2a_A TON_1937, putative unch 96.5 0.02 7E-07 52.7 11.4 178 173-383 33-214 (265)
62 1w63_A Adapter-related protein 96.4 0.12 4.2E-06 53.7 18.2 223 123-383 314-573 (618)
63 1qgr_A Protein (importin beta 96.3 0.085 2.9E-06 56.0 16.5 218 142-384 230-476 (876)
64 1te4_A Conserved protein MTH18 96.3 0.0051 1.7E-07 50.6 5.5 88 174-287 43-130 (131)
65 1ibr_B P95, importin beta-1 su 96.1 0.019 6.4E-07 56.1 9.4 159 173-343 128-289 (462)
66 2qk2_A LP04448P; mini spindles 95.9 0.06 2.1E-06 48.6 11.2 176 177-383 19-201 (242)
67 2bpt_A Importin beta-1 subunit 95.8 0.21 7E-06 52.9 16.6 216 142-383 424-664 (861)
68 3b2a_A TON_1937, putative unch 95.7 0.38 1.3E-05 44.3 15.4 186 123-344 34-220 (265)
69 2bpt_A Importin beta-1 subunit 95.7 0.41 1.4E-05 50.6 18.3 184 174-384 267-479 (861)
70 1qgr_A Protein (importin beta 95.5 0.42 1.4E-05 50.6 17.7 143 142-289 143-287 (876)
71 1ho8_A Vacuolar ATP synthase s 95.3 0.81 2.8E-05 46.2 17.6 199 168-385 72-299 (480)
72 4ady_A RPN2, 26S proteasome re 95.2 2.2 7.4E-05 46.8 21.8 163 174-382 508-671 (963)
73 2qk2_A LP04448P; mini spindles 95.1 0.49 1.7E-05 42.4 14.5 144 123-289 57-204 (242)
74 2f31_A Diaphanous protein homo 94.3 0.99 3.4E-05 41.0 14.4 177 194-377 19-218 (233)
75 1u6g_C TIP120 protein, CAND1; 94.0 0.48 1.6E-05 52.9 13.8 209 124-366 8-225 (1230)
76 2qk1_A Protein STU2; STU2P, XM 94.0 0.48 1.7E-05 43.4 11.6 176 188-383 28-216 (249)
77 2vgl_A Adaptor protein complex 93.9 1 3.5E-05 46.9 15.3 176 122-340 329-507 (621)
78 1u6g_C TIP120 protein, CAND1; 93.5 1.5 5E-05 48.9 16.5 155 176-342 437-598 (1230)
79 2qk1_A Protein STU2; STU2P, XM 93.2 0.59 2E-05 42.8 10.8 150 122-289 60-219 (249)
80 2vgl_A Adaptor protein complex 92.9 1 3.6E-05 46.8 13.3 103 174-289 330-432 (621)
81 3eg5_B Protein diaphanous homo 92.6 3.4 0.00012 40.4 15.9 167 196-366 87-276 (383)
82 3eg5_B Protein diaphanous homo 92.5 3.6 0.00012 40.3 15.9 177 143-329 81-281 (383)
83 3c2g_A SYS-1 protein; beta-cat 92.2 7.7 0.00026 37.9 17.1 170 146-324 260-450 (619)
84 2f31_A Diaphanous protein homo 92.1 5.1 0.00017 36.2 15.5 178 143-329 15-215 (233)
85 4ady_A RPN2, 26S proteasome re 92.1 11 0.00036 41.4 20.2 136 173-343 541-677 (963)
86 2bnx_A Diaphanous protein homo 91.5 5.3 0.00018 39.1 15.8 167 196-366 25-214 (386)
87 2fv2_A RCD1 required for cell 91.3 6.7 0.00023 36.4 15.0 159 192-352 72-234 (268)
88 3tjz_B Coatomer subunit gamma; 90.1 12 0.00042 36.1 16.7 102 175-292 106-207 (355)
89 2bnx_A Diaphanous protein homo 89.1 16 0.00054 35.6 16.8 177 143-329 19-219 (386)
90 2x1g_F Cadmus; transport prote 87.2 22 0.00076 38.2 18.2 213 142-384 477-719 (971)
91 3c2g_A SYS-1 protein; beta-cat 86.4 6.1 0.00021 38.6 11.4 120 192-325 259-380 (619)
92 2x19_B Importin-13; nuclear tr 85.2 35 0.0012 36.5 18.4 133 142-289 462-598 (963)
93 4ffb_C Protein STU2; tubulin f 83.6 13 0.00046 33.7 12.4 136 142-289 68-211 (278)
94 1wa5_C Importin alpha RE-expor 82.4 58 0.002 35.1 19.2 100 188-291 417-526 (960)
95 3ebb_A Phospholipase A2-activa 82.3 33 0.0011 32.2 17.4 140 232-384 161-302 (304)
96 2x19_B Importin-13; nuclear tr 80.0 57 0.002 34.8 17.5 137 188-342 461-599 (963)
97 3tjz_B Coatomer subunit gamma; 75.9 8.2 0.00028 37.4 8.4 184 120-343 102-317 (355)
98 2iw3_A Elongation factor 3A; a 74.5 1.1E+02 0.0036 33.7 28.0 237 122-384 54-324 (986)
99 2iw3_A Elongation factor 3A; a 74.3 67 0.0023 35.3 15.9 187 121-342 13-204 (986)
100 4hat_C Exportin-1; heat repeat 72.3 29 0.001 38.2 12.7 137 142-289 466-617 (1023)
101 2x1g_F Cadmus; transport prote 68.2 32 0.0011 37.0 11.8 133 189-342 477-615 (971)
102 4hat_C Exportin-1; heat repeat 67.5 16 0.00055 40.3 9.2 96 231-342 465-569 (1023)
103 2fv2_A RCD1 required for cell 65.3 86 0.0029 28.9 12.8 100 234-343 71-175 (268)
104 1lsh_A Lipovitellin (LV-1N, LV 62.7 53 0.0018 36.2 12.3 107 175-292 393-509 (1056)
105 2db0_A 253AA long hypothetical 59.7 96 0.0033 27.6 14.9 192 62-289 22-245 (253)
106 1wi9_A Protein C20ORF116 homol 39.0 35 0.0012 25.2 4.0 39 68-108 11-57 (72)
107 1wa5_C Importin alpha RE-expor 38.0 3.1E+02 0.011 29.2 13.3 135 176-342 5-152 (960)
108 2gdt_A Leader protein; P65 hom 37.7 9.5 0.00032 30.2 0.8 30 73-102 12-45 (116)
109 2k9i_A Plasmid PRN1, complete 34.7 42 0.0015 22.3 3.8 36 59-95 11-46 (55)
110 3m1i_C Exportin-1; heat repeat 33.1 55 0.0019 35.6 6.3 98 188-290 465-569 (1049)
111 3ebb_A Phospholipase A2-activa 32.1 3.1E+02 0.011 25.4 14.4 145 143-292 116-265 (304)
112 3m1i_C Exportin-1; heat repeat 30.2 2.2E+02 0.0075 30.9 10.5 101 231-343 465-570 (1049)
113 4ffb_C Protein STU2; tubulin f 28.0 3.1E+02 0.011 24.2 13.7 179 142-341 22-211 (278)
114 1upk_A MO25 protein; transfera 25.8 4.3E+02 0.015 25.1 20.6 195 170-383 75-279 (341)
115 2cpg_A REPA protein, transcrip 25.1 96 0.0033 19.5 4.1 33 63-96 8-40 (45)
116 4dvg_B Diaphanous protein; cyt 22.2 2.8E+02 0.0096 24.5 7.6 67 315-383 69-139 (353)
117 2of3_A ZYG-9; multifunctional 21.3 4.6E+02 0.016 23.8 10.6 123 86-246 109-234 (266)
118 1lsh_A Lipovitellin (LV-1N, LV 20.7 5.3E+02 0.018 28.2 11.3 119 189-344 453-578 (1056)
119 2db0_A 253AA long hypothetical 20.4 4.5E+02 0.016 23.3 23.6 187 122-350 32-219 (253)
No 1
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=100.00 E-value=3.7e-33 Score=287.73 Aligned_cols=340 Identities=16% Similarity=0.171 Sum_probs=272.9
Q ss_pred cccCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCc----hhhhhhhHHHHHHHHHhh
Q 016639 10 KHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDEVVKEN 76 (385)
Q Consensus 10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isqetfd~~v~en 76 (385)
.-+|++++.|++++++ ||++++|| ..|.||.+|+||++.|++..|++++ +++..-++.+ .++|+.+
T Consensus 65 ~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~-~~vv~~G 143 (510)
T 3ul1_B 65 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT-KAVVDGG 143 (510)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH-HHHHHTT
T ss_pred HhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH-HHHHHCC
Confidence 3589999999999998 99999999 8899999999999999999998877 4555555555 6777776
Q ss_pred -----HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCC---------------------------------------
Q 016639 77 -----MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGE--------------------------------------- 112 (385)
Q Consensus 77 -----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~--------------------------------------- 112 (385)
+..+.-+..+..+.|+. -|+||..+.+..
T Consensus 144 aIp~Lv~lL~s~~~~v~e~A~~-------aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 144 AIPAFISLLASPHAHISEQAVW-------ALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHH-------HHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHH-------HHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 55566555555565552 222222211100
Q ss_pred ---CCCCC---chHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhccc
Q 016639 113 ---SSLKD---NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR 186 (385)
Q Consensus 113 ---~~~~~---~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~ 186 (385)
..... ..+..++..|...+... +.+.+..++|.|.+++.. +.++...+.+.|++|.|+.+|.+
T Consensus 217 l~~~~~~~~~~~~~~~~lp~L~~LL~~~-------~~~v~~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~~-- 285 (510)
T 3ul1_B 217 LCRNKNPAPPLDAVEQILPTLVRLLHHN-------DPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGA-- 285 (510)
T ss_dssp HHCCCSSCCCHHHHHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTSS--CHHHHHHHHTTTCHHHHHHHHTC--
T ss_pred HhhcccchhHHHHHHhHHHHHHHHHhcC-------CHHHHHHHHHHHHHHhhc--hhhhHHHHHhcccchhhhhhhcC--
Confidence 00000 11124555666665543 778899999999999986 77777888999999999999987
Q ss_pred CCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 016639 187 CGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDEL 265 (385)
Q Consensus 187 ~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~ 265 (385)
.+..++.+|+++|++++.+++. +..+++.|+++.|+.+|++ ++.+++..++|+|++++.+++.+++.+++.|++++
T Consensus 286 -~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~ 362 (510)
T 3ul1_B 286 -TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPF 362 (510)
T ss_dssp -SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred -CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcC--CCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHH
Confidence 4889999999999999988765 5788999999999999985 57899999999999999999999999999999999
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc---
Q 016639 266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV--- 342 (385)
Q Consensus 266 Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~--- 342 (385)
|+.+|++++.+++++|+|+|+||+. ++..++..++++.|+|++|+++|+.. |+.++..++.+|.++..
T Consensus 363 Lv~lL~~~~~~v~~~Aa~aL~Nl~~--------~~~~~~~~~L~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~~~ 433 (510)
T 3ul1_B 363 LVGVLSKADFKTQKEAAWAITNYTS--------GGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQAAE 433 (510)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHc--------cCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999985 34457788899999999999999885 78888888999888752
Q ss_pred ----ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 343 ----NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 343 ----~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
.+.++..|+++||++.|.++ +. |+|.+|++.|..+|.+
T Consensus 434 ~~~~~~~~~~~iee~ggl~~ie~L-q~---~~n~~i~~~A~~iie~ 475 (510)
T 3ul1_B 434 KLGETEKLSIMIEECGGLDKIEAL-QR---HENESVYKASLNLIEK 475 (510)
T ss_dssp TTTCHHHHHHHHHHTTHHHHHHHG-GG---CSSHHHHHHHHHHHHH
T ss_pred hccchHHHHHHHHHcCcHHHHHHH-Hc---CCCHHHHHHHHHHHHH
Confidence 35789999999999999664 55 5677999999999864
No 2
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=100.00 E-value=3.3e-32 Score=281.50 Aligned_cols=347 Identities=16% Similarity=0.182 Sum_probs=273.2
Q ss_pred cccCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCc----hhhhhhhHHHHHHHHHhh
Q 016639 10 KHFSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPP----KTVRTISQEAFDEVVKEN 76 (385)
Q Consensus 10 ~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~isqetfd~~v~en 76 (385)
.-+|++++.|+++++. ||++++|| ..|+||.+|.||.+.+++..|++++ +++...+..+ ..+|..+
T Consensus 84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~-~~vv~~G 162 (529)
T 3tpo_A 84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT-KAVVDGG 162 (529)
T ss_dssp HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH-HHHHHTT
T ss_pred HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH-HHHHHCC
Confidence 4579999999999998 79999999 7899999999999999999998877 4555555555 6677666
Q ss_pred -----HHhcCCChhHHHHHHHHHH--------------HHcCC-C-CCCCccCCCCC-------------------CCCC
Q 016639 77 -----MEDLGMEPTEALQDAIQTL--------------SLQGV-D-LSGIVKCVPGE-------------------SSLK 116 (385)
Q Consensus 77 -----i~~f~m~~~eAl~~aI~qf--------------e~QGv-d-Lsni~~~~~~~-------------------~~~~ 116 (385)
+..+.-...+..+.|+.-+ -..|+ + |-.+....... ....
T Consensus 163 aip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~ 242 (529)
T 3tpo_A 163 AIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP 242 (529)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTT
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccc
Confidence 4555555555555555221 11121 0 10111100000 0000
Q ss_pred C---chHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHH
Q 016639 117 D---NPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVL 193 (385)
Q Consensus 117 ~---~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl 193 (385)
. ..+..++..|...+... +.+.+..++|+|.+++.. +.++...+.+.|++|.|+.+|.+ .+..++
T Consensus 243 ~~~~~~~~~~lp~L~~LL~~~-------~~~v~~~a~~aL~~l~~~--~~~~~~~v~~~g~i~~Lv~lL~~---~~~~v~ 310 (529)
T 3tpo_A 243 APPLDAVEQILPTLVRLLHHN-------DPEVLADSCWAISYLTDG--PNERIEMVVKKGVVPQLVKLLGA---TELPIV 310 (529)
T ss_dssp CCCHHHHHHHHHHHHHHTTSS-------CHHHHHHHHHHHHHHHSS--CHHHHHHHHTTTCHHHHHHHHTC---SCHHHH
T ss_pred hhhHHHHhhHHHHHHHHhcCC-------cHHHHHHHHHHHHHhhhh--hhhhHHHHHhccchHHHHHHhcC---CChhHH
Confidence 0 11124556666666544 778899999999999997 77778888999999999999987 488999
Q ss_pred HHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHcc
Q 016639 194 DSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR 272 (385)
Q Consensus 194 ~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~ 272 (385)
.+|+++|++|+.+++. +..+++.|+++.|+.+|++ ++.+++..++|+|++++.+++.+++.+++.|++++|+.+|.+
T Consensus 311 ~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~--~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~ 388 (529)
T 3tpo_A 311 TPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTN--PKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK 388 (529)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTC--SSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcC--CCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC
Confidence 9999999999988765 5788999999999999985 578999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh-------cChH
Q 016639 273 QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-------VNDE 345 (385)
Q Consensus 273 ~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La-------~~~e 345 (385)
++.+++++|+|+|+||+. ++..++..++++.|+|++|+++|+.. |+.++..++.+|.++. ..+.
T Consensus 389 ~~~~v~~~A~~aL~nl~~--------~~~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~~~~~~~~~~ 459 (529)
T 3tpo_A 389 ADFKTQKAAAWAITNYTS--------GGTVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQAAEKLGETEK 459 (529)
T ss_dssp SCHHHHHHHHHHHHHHHH--------HSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred CCHHHHHHHHHHHHHHHc--------CCCHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhHhccChHH
Confidence 999999999999999984 44567888999999999999999885 7888888888888875 2357
Q ss_pred HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 346 ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 346 ~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
++..|+++||++.|..+ +. |+|.+|++.|..+|.+
T Consensus 460 ~~~~iee~ggl~~ie~L-q~---~~n~~i~~~A~~iie~ 494 (529)
T 3tpo_A 460 LSIMIEECGGLDKIEAL-QR---HENESVYKASLNLIEK 494 (529)
T ss_dssp HHHHHHHTTCHHHHTGG-GG---CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCcHHHHHHH-Hc---CCCHHHHHHHHHHHHH
Confidence 88999999999999665 44 5677999999999864
No 3
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=9.9e-29 Score=252.04 Aligned_cols=224 Identities=15% Similarity=0.094 Sum_probs=190.6
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHH-cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcC-C-ccchhHhhCCC
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATK-NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHD-V-QSTETFRTGGG 218 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~-~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~-~-~~~~~i~~~gg 218 (385)
+.+.+..++|.|..+|.. ++.++..+.. .|+||+||.+|++ ++.+++..|+++|.+|+.+ + +.+..|++.||
T Consensus 213 ~~~l~~~Aa~aL~nLa~~--~~~~k~~i~~~~GaIp~LV~LL~s---~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~Ga 287 (458)
T 3nmz_A 213 SITLRRYAGMALTNLTFG--DVANKATLCSMKGCMRALVAQLKS---ESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 287 (458)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHhCC--CcccHHHHHHcCCcHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCC
Confidence 456789999999999997 7778877765 4669999999997 5889999999999999875 2 33588899999
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCCChHHHHHHHccCCh----HHHHHHHHHHHHhcC---
Q 016639 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRN----DSIQSLYDAIRVLLT--- 290 (385)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv-~~G~i~~Lv~lL~~~~~----~v~k~A~~aL~~Lt~--- 290 (385)
++.|+++|... .+.+++..++++|++++..+++||..|+ ..|++++|+.+|.+++. +++++|+|+|+||+.
T Consensus 288 I~~LV~lLl~s-~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 288 VKALMECALEV-KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHTTC-CSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 99999987643 4688999999999999986888999998 79999999999998754 489999999999984
Q ss_pred CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHcCcHHHHHHHHHhcCCc
Q 016639 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGLQ 369 (385)
Q Consensus 291 ~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~GGl~~Lv~ll~~~~~~ 369 (385)
.++ ++...+.+.|+|++|+.+|+++ +..++++++++|++|+. ++++++.|.+.|+++.|+++|++
T Consensus 367 ~~~---------~~~~~i~~~G~i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s---- 432 (458)
T 3nmz_A 367 TNE---------DHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS---- 432 (458)
T ss_dssp TCH---------HHHHHHHHTTHHHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC----
T ss_pred CCH---------HHHHHHHHcccHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC----
Confidence 222 3444678999999999999886 67799999999999995 57899999999999999999975
Q ss_pred CcHHHHHHHHHHHhcC
Q 016639 370 GNKTVARICCSLLSKV 385 (385)
Q Consensus 370 ~~~~v~k~a~~~Lr~l 385 (385)
.+..+.+.|+.+|+||
T Consensus 433 ~~~~v~~~Aa~AL~nL 448 (458)
T 3nmz_A 433 KHKMIAMGSAAALRNL 448 (458)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 2347899999999885
No 4
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.94 E-value=6.4e-26 Score=224.32 Aligned_cols=223 Identities=15% Similarity=0.092 Sum_probs=190.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcC-C-ccchhHhhCCC
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHD-V-QSTETFRTGGG 218 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~-~-~~~~~i~~~gg 218 (385)
+.+.+..++|.|+.+|.. ++.+|..+... |+||.||.+|++ ++..++..|+++|.+|+.+ + +.+..+++.||
T Consensus 97 ~~~~q~~Aa~aL~nLa~~--~~~~k~~i~~~~GaIp~LV~LL~s---~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~ 171 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFG--DVANKATLCSMKGCMRALVAQLKS---ESEDLQQVIASVLRNLSWRADVNSKKTLREVGS 171 (354)
T ss_dssp HHHHHHHHHHHHHHHTSS--CHHHHHHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCcHHHHHHHHCC---CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCC
Confidence 466788999999999997 77788887654 559999999997 5889999999999999875 2 33688899999
Q ss_pred cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCCChHHHHHHHccCCh----HHHHHHHHHHHHhcC---
Q 016639 219 PKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM-ELKIDELILEILSRQRN----DSIQSLYDAIRVLLT--- 290 (385)
Q Consensus 219 i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv-~~G~i~~Lv~lL~~~~~----~v~k~A~~aL~~Lt~--- 290 (385)
++.|+++|... .+.+++..++++|++++..+++||..|+ ..|++++|+.+|++++. +++++|+|+|++|+.
T Consensus 172 Ip~Lv~lL~~~-~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a 250 (354)
T 3nmw_A 172 VKALMECALEV-KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250 (354)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhcc
Confidence 99999986543 4678999999999999987888999998 79999999999988754 589999999999984
Q ss_pred -CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHcCcHHHHHHHHHhcCC
Q 016639 291 -PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDALLRCIDDSGL 368 (385)
Q Consensus 291 -~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~GGl~~Lv~ll~~~~~ 368 (385)
+++ +...+.+.|++++|+.+|+++ +..++++++++|.+|+. ++++++.|.+.|+++.|++++++
T Consensus 251 ~~~~----------~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s--- 316 (354)
T 3nmw_A 251 TNED----------HRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS--- 316 (354)
T ss_dssp TCHH----------HHHHHHTTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC---
T ss_pred CCHH----------HHHHHHHcCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC---
Confidence 333 344577999999999999985 67799999999999995 57899999999999999999976
Q ss_pred cCcHHHHHHHHHHHhcC
Q 016639 369 QGNKTVARICCSLLSKV 385 (385)
Q Consensus 369 ~~~~~v~k~a~~~Lr~l 385 (385)
.+..+.+.|+.+|++|
T Consensus 317 -~~~~i~~~A~~aL~nL 332 (354)
T 3nmw_A 317 -KHKMIAMGSAAALRNL 332 (354)
T ss_dssp -SSHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 2347899999999875
No 5
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.93 E-value=7.4e-25 Score=216.71 Aligned_cols=225 Identities=15% Similarity=0.138 Sum_probs=189.8
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcc--------cCCcHhHHHHHHHHHHHHhcCCcc-chh
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKM--------RCGSKRVLDSCLKTMALLVHDVQS-TET 212 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~--------~~~d~~vl~~Al~aLa~L~~~~~~-~~~ 212 (385)
....+..++|.|..++. ++++|..+.+.|++++|+.+|... ...+..++..|.++|.+|+.+++. +..
T Consensus 45 ~~~~~~~A~~aL~nls~---d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~ 121 (354)
T 3nmw_A 45 VEHQICPAVCVLMKLSF---DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT 121 (354)
T ss_dssp GGGTHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred chHHHHHHHHHHHHHcC---CHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45677899999999997 589999999999999999999631 012367899999999999987653 455
Q ss_pred HhhCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHH-ccCChHHHHHHHHHHHHhc
Q 016639 213 FRTGGG-PKLLVNILIDGNEDPEILNSGFAVVAASATG-NEVVKESYMELKIDELILEIL-SRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 213 i~~~gg-i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~-~e~nr~~iv~~G~i~~Lv~lL-~~~~~~v~k~A~~aL~~Lt 289 (385)
+...+| ||.|+++|++ ++.+++..++|+|++++.+ ++.||..|++.|++++|+.+| ++++.++++.|+++|++|+
T Consensus 122 i~~~~GaIp~LV~LL~s--~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs 199 (354)
T 3nmw_A 122 LCSMKGCMRALVAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 199 (354)
T ss_dssp HHHCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHHCC--CCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 656666 9999999985 5789999999999999875 678999999999999999985 5566689999999999999
Q ss_pred C-CCccchhhhhchhHHHHHH-hcCcHHHHHHHHhcCCCH---HHHHHHHHHHHHhhc----ChHHHHHHHHcCcHHHHH
Q 016639 290 T-PDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSS---PSLISASIALKAVAV----NDEICKSVAENGGIDALL 360 (385)
Q Consensus 290 ~-~Dd~rv~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~~~---~v~~~a~~aL~~La~----~~e~c~~I~e~GGl~~Lv 360 (385)
. .|++|. .|+ ..|+|++|+++|+...+. .++++++++|++|+. ++++++.|.+.|+++.|+
T Consensus 200 ~~~~~nk~----------~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv 269 (354)
T 3nmw_A 200 AHCTENKA----------DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLL 269 (354)
T ss_dssp TTCHHHHH----------HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHH
T ss_pred ccChhhhH----------HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHH
Confidence 7 545543 477 789999999999876432 589999999999995 789999999999999999
Q ss_pred HHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 361 RCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 361 ~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
++|++ .+..+.+.|+.+|+||
T Consensus 270 ~lL~~----~~~~v~~~A~~aL~nL 290 (354)
T 3nmw_A 270 QHLKS----HSLTIVSNACGTLWNL 290 (354)
T ss_dssp HHTTC----SCHHHHHHHHHHHHHH
T ss_pred HHHcC----CChHHHHHHHHHHHHH
Confidence 99986 2347999999999875
No 6
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.93 E-value=5.2e-25 Score=224.14 Aligned_cols=343 Identities=11% Similarity=0.053 Sum_probs=250.6
Q ss_pred cCChhhhhHHhhhhhcc--CCCCC------CCCCCccccccccccCCCcccCCCchhhhhhh---HHHHHHHHHhh----
Q 016639 12 FSNSEQIDFQKQSSLIT--LPQPR------AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTIS---QEAFDEVVKEN---- 76 (385)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is---qetfd~~v~en---- 76 (385)
.|++++.|+.+...|.. ..+|+ ..|.||..|.+|.. ++...+..+..+-+.|+ .+.=..+++.+
T Consensus 12 ~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s-~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~ 90 (457)
T 1xm9_A 12 SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRS-PNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIRE 90 (457)
T ss_dssp HSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTS-SCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 35678888888887433 24454 67999999999984 56666766654444444 33323444555
Q ss_pred -HHhcC-CChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHH-HHHHHHHHHhhc--------CC-CCCCcccHH
Q 016639 77 -MEDLG-MEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI-QSLERLKQLDLN--------SK-DKFSDEDLN 144 (385)
Q Consensus 77 -i~~f~-m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~-~al~~L~~~l~~--------~~-~~~~~~~~~ 144 (385)
+..+. -...+..++|+ +-|.|+..+ +..+ ..+. .++..|...+.. .. +..+..+.+
T Consensus 91 Lv~lL~~~~~~~~~~~a~-------~aL~nLa~~-~~~~----~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~ 158 (457)
T 1xm9_A 91 AVSLLRRTGNAEIQKQLT-------GLLWNLSST-DELK----EELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPE 158 (457)
T ss_dssp HHHHHTTCCCHHHHHHHH-------HHHHHHHTS-SSTH----HHHHHHHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred HHHHHhhCCCHHHHHHHH-------HHHHHHhcC-HHhH----HHHHhccHHHHHHHHhccccccccCccchhcccccHH
Confidence 56666 44567778888 677788765 2211 1122 677888887731 10 000113567
Q ss_pred HHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhccc---CCcHhHHHHHHHHHHHHhcC--------------
Q 016639 145 EMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMR---CGSKRVLDSCLKTMALLVHD-------------- 206 (385)
Q Consensus 145 ~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~---~~d~~vl~~Al~aLa~L~~~-------------- 206 (385)
.++.++|.|+++|. ++++|..+.+. |++|+|+.+|++.. ..+.++..+|+.+|.+|+..
T Consensus 159 v~~~a~~aL~nLs~---~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~ 235 (457)
T 1xm9_A 159 VFFNATGCLRNLSS---ADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235 (457)
T ss_dssp HHHHHHHHHHHHTT---SHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccc
Confidence 78899999999997 48899999998 99999999998521 12445777888888887521
Q ss_pred -------------------------------------CccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 016639 207 -------------------------------------VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG 249 (385)
Q Consensus 207 -------------------------------------~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~ 249 (385)
....+.+.+.|+++.++.+|++. ++++++..++|+|+++|.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~-~~~~~~e~a~~aL~nl~~~ 314 (457)
T 1xm9_A 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS-KKDATLEACAGALQNLTAS 314 (457)
T ss_dssp TC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTC
T ss_pred ccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhc-CCHHHHHHHHHHHHHhccC
Confidence 01124566788899999999874 5689999999999999987
Q ss_pred Chhh-----HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcC
Q 016639 250 NEVV-----KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAG 324 (385)
Q Consensus 250 ~e~n-----r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~ 324 (385)
+... +..|.++|++|.|+.+|.+++.+++++|||+|++|+.+.+++ .++..|+|++||++|...
T Consensus 315 ~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~-----------~~i~~~~i~~Lv~lL~~~ 383 (457)
T 1xm9_A 315 KGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH-----------RVMGNQVFPEVTRLLTSH 383 (457)
T ss_dssp SSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGH-----------HHHHHHTHHHHHHTTTSC
T ss_pred cCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHH-----------HHHHHhhhHHHHHhccCC
Confidence 7542 333447999999999999999999999999999999865543 344568999999999985
Q ss_pred CC-----HHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 325 LS-----SPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 325 ~~-----~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
.. ..++..++++|.++... +++++.|.++||++.|++++.+. .+..+++.|+.+|.++
T Consensus 384 ~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~---~~~~i~~~A~~~L~~~ 447 (457)
T 1xm9_A 384 TGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSS---ASPKAAEAARLLLSDM 447 (457)
T ss_dssp CSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTT
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCC---CcHHHHHHHHHHHHHH
Confidence 32 36788999999999764 58999999999999999998863 2458999999999875
No 7
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.93 E-value=7.3e-25 Score=224.98 Aligned_cols=336 Identities=15% Similarity=0.221 Sum_probs=262.0
Q ss_pred ccCChhhhhHHhhhhh----ccCCCCC-----CCCCCccccccccccCCCcccCCCchhhhhhhH---HHHHHHHHhh--
Q 016639 11 HFSNSEQIDFQKQSSL----ITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQ---EAFDEVVKEN-- 76 (385)
Q Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isq---etfd~~v~en-- 76 (385)
-.|++++.|+.+.+.| +..++|| ..|+||..+.||...+++..++.+..+-..|+. +.-..+++.+
T Consensus 83 L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i 162 (528)
T 4b8j_A 83 VYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAV 162 (528)
T ss_dssp HTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcH
Confidence 3577889999998884 6677677 679999999999988777777665533333332 3334444444
Q ss_pred ---HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHH--HHHHHHHHHhhcCCCCCCcccHHHHHHHHH
Q 016639 77 ---MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNEMMGLFD 151 (385)
Q Consensus 77 ---i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~--~al~~L~~~l~~~~~~~~~~~~~~~~~al~ 151 (385)
+..+.-+..+..+.|+ +-|+||..+.+..+ ..+. .++..|...+... .+.+....++|
T Consensus 163 ~~L~~lL~~~~~~v~~~a~-------~aL~~l~~~~~~~~----~~i~~~g~l~~Ll~lL~~~------~~~~v~~~a~~ 225 (528)
T 4b8j_A 163 PIFVKLLGSSSDDVREQAV-------WALGNVAGDSPKCR----DLVLANGALLPLLAQLNEH------TKLSMLRNATW 225 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHH-------HHHHHHHHTCHHHH----HHHHHTTCHHHHHHTCCTT------CCHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHH-------HHHHHHhCCChhhH----HHHHHCCcHHHHHHHHhcC------CCHHHHHHHHH
Confidence 4455555555666666 55667765432210 1122 2566677776321 27789999999
Q ss_pred HHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccc-hhHhhCCCcHHHHHHHhcCC
Q 016639 152 KLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQST-ETFRTGGGPKLLVNILIDGN 230 (385)
Q Consensus 152 ~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~-~~i~~~ggi~~Lv~lL~~~~ 230 (385)
.|..+|.. .+. .......|++|.|+.+|.+ .+..++..|+++|++|+.+.+.+ +.+++.|+++.|+.+|.+
T Consensus 226 ~L~~L~~~--~~~-~~~~~~~~~l~~L~~lL~~---~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-- 297 (528)
T 4b8j_A 226 TLSNFCRG--KPQ-PSFEQTRPALPALARLIHS---NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLH-- 297 (528)
T ss_dssp HHHHHHCS--SSC-CCHHHHTTHHHHHHHHTTC---CCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTC--
T ss_pred HHHHHHcC--CCC-CcHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcC--
Confidence 99999996 444 3344568999999999987 58899999999999999876553 678899999999999986
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH
Q 016639 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (385)
Q Consensus 231 ~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~-~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~ 309 (385)
++..++..++++|++++.+++.+++.+++.|+++.|+.+|.+. +..++++|||+|.+|+..++ ++...++
T Consensus 298 ~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~---------~~~~~~~ 368 (528)
T 4b8j_A 298 PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNK---------DQIQAVI 368 (528)
T ss_dssp SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCH---------HHHHHHH
T ss_pred CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCH---------HHHHHHH
Confidence 4689999999999999999999999999999999999999988 77899999999999986433 4455678
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 310 e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+.|++++|+.+|... +..++..++++|.+++.. ++.+..+++.|+++.|+.+|.+ .+..+...++.+|.+|
T Consensus 369 ~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~----~d~~v~~~al~~L~~l 441 (528)
T 4b8j_A 369 NAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLIC----PDIRIVTVCLEGLENI 441 (528)
T ss_dssp HTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence 899999999999986 778999999999999875 6899999999999999999976 3347888998888764
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.92 E-value=1.1e-23 Score=193.44 Aligned_cols=235 Identities=18% Similarity=0.275 Sum_probs=207.0
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~ 202 (385)
.++.|...+.+. +.+....+++.|..++.. +++++..+.+.|+++.|+.+|++ ++..++..|+++|++
T Consensus 3 ~i~~L~~~L~~~-------~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~g~i~~L~~ll~~---~~~~v~~~a~~~L~~ 70 (252)
T 4hxt_A 3 DVEKLVKLLTST-------DSETQKEAARDLAEIASG--PASAIKAIVDAGGVEVLVKLLTS---TDSEVQKEAARALAN 70 (252)
T ss_dssp HHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC--CcHHHHHHHHCCCHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence 366777777654 688899999999999997 77899999999999999999998 478999999999999
Q ss_pred HhcCCc-cchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639 203 LVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (385)
Q Consensus 203 L~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A 281 (385)
|+.+.+ .+..+.+.|+++.++.+|++ ++.+++..++++|.+++..+++++..+++.|+++.|+.+|++.+..++..+
T Consensus 71 l~~~~~~~~~~~~~~~~i~~l~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a 148 (252)
T 4hxt_A 71 IASGPDEAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEA 148 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 998743 36788899999999999985 578999999999999998899999999999999999999999888999999
Q ss_pred HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHHHH
Q 016639 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALL 360 (385)
Q Consensus 282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv 360 (385)
+++|++|+..++ ++...+.+.|+++.|+.+|+.. ++.++..++++|.+++.. ++.++.+.+.|+++.|+
T Consensus 149 ~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~ 218 (252)
T 4hxt_A 149 ARALANIASGPD---------EAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQ 218 (252)
T ss_dssp HHHHHHHTTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHcCCH---------HHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHH
Confidence 999999997554 2344678899999999999864 788999999999999984 57889999999999999
Q ss_pred HHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 361 RCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 361 ~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+++++ .+..+.+.++.+|++|
T Consensus 219 ~ll~~----~~~~v~~~a~~~L~~l 239 (252)
T 4hxt_A 219 KLLTS----TDSEVQKEAQRALENI 239 (252)
T ss_dssp HGGGC----SCHHHHHHHHHHHHHH
T ss_pred HHHCC----CcHHHHHHHHHHHHHH
Confidence 99975 2348999999999875
No 9
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.92 E-value=7.6e-25 Score=223.36 Aligned_cols=223 Identities=15% Similarity=0.147 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcc--------cCCcHhHHHHHHHHHHHHhcCCcc-chhHh
Q 016639 144 NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKM--------RCGSKRVLDSCLKTMALLVHDVQS-TETFR 214 (385)
Q Consensus 144 ~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~--------~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~ 214 (385)
..++.|+|.|..++. ++++|..+.+.|++++|+.+|... ...+..++..|.|+|.+|+.+++. +..+.
T Consensus 163 ~~~~qAv~aL~nls~---~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~ 239 (458)
T 3nmz_A 163 HQICPAVCVLMKLSF---DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 239 (458)
T ss_dssp TTTHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHH
Confidence 456799999999965 699999999999999999999531 002367899999999999988764 34555
Q ss_pred hCCC-cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChhhHHHHHhCCChHHHHHHHc-cCChHHHHHHHHHHHHhcC-
Q 016639 215 TGGG-PKLLVNILIDGNEDPEILNSGFAVVAASATG-NEVVKESYMELKIDELILEILS-RQRNDSIQSLYDAIRVLLT- 290 (385)
Q Consensus 215 ~~gg-i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~-~e~nr~~iv~~G~i~~Lv~lL~-~~~~~v~k~A~~aL~~Lt~- 290 (385)
..+| ||.|+++|++ ++.+++..++|+|++++.+ ++.||+.|++.|++++|+.+|. +++..+++.|+++|+||+.
T Consensus 240 ~~~GaIp~LV~LL~s--~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~ 317 (458)
T 3nmz_A 240 SMKGCMRALVAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH 317 (458)
T ss_dssp HCHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccC
Confidence 5555 9999999985 5789999999999999875 6789999999999999999864 4566899999999999997
Q ss_pred CCccchhhhhchhHHHHHH-hcCcHHHHHHHHhcCCCH---HHHHHHHHHHHHhhc----ChHHHHHHHHcCcHHHHHHH
Q 016639 291 PDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGLSS---PSLISASIALKAVAV----NDEICKSVAENGGIDALLRC 362 (385)
Q Consensus 291 ~Dd~rv~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~~~---~v~~~a~~aL~~La~----~~e~c~~I~e~GGl~~Lv~l 362 (385)
.|++|. .|+ ..|+|++|+++|+...+. .++.+++++|++|+. ++++++.|.+.|+++.|+++
T Consensus 318 ~~~nk~----------~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~L 387 (458)
T 3nmz_A 318 CTENKA----------DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQH 387 (458)
T ss_dssp CHHHHH----------HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHH----------HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHH
Confidence 556554 477 789999999999886433 589999999999995 77999999999999999999
Q ss_pred HHhcCCcCcHHHHHHHHHHHhcC
Q 016639 363 IDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 363 l~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
|+++ +..+.+.|+.+|+||
T Consensus 388 L~~~----~~~v~~~A~~aL~nL 406 (458)
T 3nmz_A 388 LKSH----SLTIVSNACGTLWNL 406 (458)
T ss_dssp SSCS----CHHHHHHHHHHHHHH
T ss_pred HcCC----ChHHHHHHHHHHHHH
Confidence 9862 347999999999875
No 10
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=2.3e-23 Score=192.80 Aligned_cols=234 Identities=16% Similarity=0.220 Sum_probs=199.8
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHH
Q 016639 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (385)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L 203 (385)
.+.+...+.+. +.+.+..+++.|+.+... +++++..+.+.|++|.|+.+|++ .++.++..|+++|+++
T Consensus 14 ~~~~~~~L~s~-------~~~~~~~a~~~L~~~l~~--~~~~~~~~~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l 81 (252)
T 4db8_A 14 LPQMTQQLNSD-------DMQEQLSATRKFSQILSD--GNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNI 81 (252)
T ss_dssp HHHHHHHHHSS-------CSSHHHHHHHHHHHHHHH--HHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-------CHHHHHHHHHHHHHHHcC--CCchHHHHHHcCcHHHHHHHHcC---CCHHHHHHHHHHHHHH
Confidence 44455555554 678999999999765554 67888899999999999999998 4789999999999999
Q ss_pred hcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHH
Q 016639 204 VHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY 282 (385)
Q Consensus 204 ~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~ 282 (385)
+.+++. +..+++.|+++.|+++|++ ++.+++..++++|.+++..++..+..+++.|+++.|+.+|++.+..+++.|+
T Consensus 82 ~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~ 159 (252)
T 4db8_A 82 ASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL 159 (252)
T ss_dssp TTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence 986544 6888999999999999997 5789999999999999876654448899999999999999998889999999
Q ss_pred HHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHHHHH
Q 016639 283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDALLR 361 (385)
Q Consensus 283 ~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv~ 361 (385)
|+|.+|+..++ ++...+++.|+++.|+++|+.. ++.++..++++|.+|+.. ++.+..+.+.|+++.|++
T Consensus 160 ~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ 229 (252)
T 4db8_A 160 WALSNIASGGN---------EQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 229 (252)
T ss_dssp HHHHHHTTSCH---------HHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHcCCh---------HHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH
Confidence 99999997554 3344677899999999999875 788999999999999964 578899999999999999
Q ss_pred HHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 362 CIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 362 ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
++++ .+. .+.+.|+.+|.+|
T Consensus 230 ll~~--~~~--~v~~~A~~~L~~l 249 (252)
T 4db8_A 230 LQSH--ENE--KIQKEAQEALEKL 249 (252)
T ss_dssp TTTC--SSS--HHHHTHHHHHHTT
T ss_pred HhCC--CCH--HHHHHHHHHHHHH
Confidence 9976 234 8999999999986
No 11
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.91 E-value=3.5e-24 Score=230.86 Aligned_cols=343 Identities=11% Similarity=0.104 Sum_probs=240.1
Q ss_pred ccCChhhhhHHhhhhhcc-CCCCC--------CCCCCccccccccccCCCcccCCCchhhh-hhhHHHHHHHHHhh----
Q 016639 11 HFSNSEQIDFQKQSSLIT-LPQPR--------AHPFVPKDHPFFVRTDLTAHEMGPPKTVR-TISQEAFDEVVKEN---- 76 (385)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~isqetfd~~v~en---- 76 (385)
..+++.+.-+.+.+.|+. .|-|| ..|+||.+++.+...| ...|..+.++-. --+-+.+...|.++
T Consensus 256 ~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~-~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~ 334 (810)
T 3now_A 256 LLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDD-ELQQRVACECLIAASSKKDKAKALCEQGVDI 334 (810)
T ss_dssp HSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHTTSHHHHHTTHHHHHHH
T ss_pred hccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCcHHHHHHHHcCcHH
Confidence 345677777777777776 45555 6699999999887653 333322111000 01112223333332
Q ss_pred HHhcCCChhHHHHHHHHHHHHcCCCCCCCccC---CCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHH
Q 016639 77 MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKC---VPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKL 153 (385)
Q Consensus 77 i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~---~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L 153 (385)
+..+=-+.+..+ +.|.+ +.|.++..+ .+.........+...++.|+..+.+. ..+.+....++|.|
T Consensus 335 L~~Ll~s~~~~v----r~~Al--~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~-----~~d~~v~~~AveaL 403 (810)
T 3now_A 335 LKRLYHSKNDGI----RVRAL--VGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKP-----GKDKDIRRWAADGL 403 (810)
T ss_dssp HHHHTTCSCHHH----HHHHH--HHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCS-----SCCSSHHHHHHHHH
T ss_pred HHHHHcCCCHHH----HHHHH--HHHHHhccccccCccccchhhccHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHH
Confidence 222211222222 22222 123333211 11111111233456677888887652 11567999999999
Q ss_pred HHHhcCCCChhhHHHHH-HcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-----------------------
Q 016639 154 IELCGGNEGSVNAAVAT-KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS----------------------- 209 (385)
Q Consensus 154 ~~lc~~~~~~~~r~~~~-~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~----------------------- 209 (385)
.+++.. ++.|..++ +.|++|.||++|++ ++..++..|+++|+||+.+.+.
T Consensus 404 ayLS~~---~~vk~~lv~d~g~Ip~LV~LL~s---~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ 477 (810)
T 3now_A 404 AYLTLD---AECKEKLIEDKASIHALMDLARG---GNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHE 477 (810)
T ss_dssp HHHTTS---HHHHHHHHHCHHHHHHHHHHHHT---TCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSC
T ss_pred HHHhCC---cHHHHHHHHccchHHHHHHHhCC---CChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccc
Confidence 999985 56566555 67999999999997 4788999999999999987631
Q ss_pred -------c---hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHH
Q 016639 210 -------T---ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ 279 (385)
Q Consensus 210 -------~---~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k 279 (385)
+ +.++++|++|.|+++|++ ++++++..++|+|.+++ +++++|..|+++|++++|+.+|++++...++
T Consensus 478 ld~~~~v~~r~~~VveaGaVp~LV~LL~s--~s~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~ 554 (810)
T 3now_A 478 LDDVDFINKRITVLANEGITTALCALAKT--ESHNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEGTEKGKR 554 (810)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTC--CCHHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred cccHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccCCHHHHH
Confidence 1 577899999999999986 57899999999999998 6888999999999999999999999888999
Q ss_pred HHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHH
Q 016639 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DEICKSVAENGGIDA 358 (385)
Q Consensus 280 ~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~ 358 (385)
+|+|+|.+|+...+....|++ . ...|++++|+++|....+...+.+++++|.+|+.. +++++.|++.||++.
T Consensus 555 ~Aa~AL~nL~~~~~p~~~~~~------~-~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~ 627 (810)
T 3now_A 555 HATQALARIGITINPEVSFSG------Q-RSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSK 627 (810)
T ss_dssp HHHHHHHHHHHHSCHHHHTTT------H-HHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhcCCChhhhhcc------h-hhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHH
Confidence 999999999865554433322 0 11369999999997532433456899999999987 589999999999999
Q ss_pred HHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 359 LLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 359 Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
|+++|.+ .+. .+.+.|+.+|.||
T Consensus 628 Lv~LL~s--~~~--~Vq~~A~~~L~NL 650 (810)
T 3now_A 628 IEYYLME--DHL--YLTRAAAQCLCNL 650 (810)
T ss_dssp HHHHHHS--CCT--THHHHHHHHHHHH
T ss_pred HHHHHcC--CCH--HHHHHHHHHHHHH
Confidence 9999986 234 7999999999875
No 12
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.91 E-value=5.4e-23 Score=209.23 Aligned_cols=233 Identities=15% Similarity=0.163 Sum_probs=185.4
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHH
Q 016639 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (385)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L 203 (385)
++.|...+.+. +.+.+..+++.|+.+|.. ++.++..+.+.|++|.||.+|++ +++.++..|+++|.+|
T Consensus 4 l~~lv~~L~s~-------~~~~q~~A~~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~s---~~~~~~~~A~~aL~nL 71 (457)
T 1xm9_A 4 IPKAVQYLSSQ-------DEKYQAIGAYYIQHTCFQ--DESAKQQVYQLGGICKLVDLLRS---PNQNVQQAAAGALRNL 71 (457)
T ss_dssp HHHHHHHHHSS-------CTHHHHHHHHHHHHHTSS--CSSHHHHHHHTTHHHHHHHHTTS---SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-------CHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHH
Confidence 55677777654 678999999999999986 78888889999999999999997 5889999999999999
Q ss_pred hcC-CccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHc--------cC-
Q 016639 204 VHD-VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS--------RQ- 273 (385)
Q Consensus 204 ~~~-~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~--------~~- 273 (385)
+.+ ++.+..+++.||+|.|+++|+. +.+.+++..++|+|++++.. +++|..|++ |++|+|+.+|. +.
T Consensus 72 a~~~~~~k~~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~ 148 (457)
T 1xm9_A 72 VFRSTTNKLETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNS 148 (457)
T ss_dssp HSSCHHHHHHHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC----
T ss_pred hcCCHHHHHHHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCcc
Confidence 987 4446888999999999999984 24789999999999999975 789999999 99999999993 22
Q ss_pred -------ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhc-CcHHHHHHHHh-----------------------
Q 016639 274 -------RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-GIARALVHSLH----------------------- 322 (385)
Q Consensus 274 -------~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~-Ggi~~Lv~lL~----------------------- 322 (385)
...++++|+|+|+||+.++++| ..+++. |++++|+.+|+
T Consensus 149 ~~~~e~~~~~v~~~a~~aL~nLs~~~~~~----------~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nL 218 (457)
T 1xm9_A 149 NMSREVVDPEVFFNATGCLRNLSSADAGR----------QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNL 218 (457)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTSHHHH----------HHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHH
T ss_pred chhcccccHHHHHHHHHHHHHHccCHHHH----------HHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhc
Confidence 2367779999999999764443 334454 55555555554
Q ss_pred ---------------------------------------------------------------------------cCCCH
Q 016639 323 ---------------------------------------------------------------------------AGLSS 327 (385)
Q Consensus 323 ---------------------------------------------------------------------------~~~~~ 327 (385)
...++
T Consensus 219 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~ 298 (457)
T 1xm9_A 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298 (457)
T ss_dssp TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred ccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCH
Confidence 33345
Q ss_pred HHHHHHHHHHHHhhcCh-H----HHHH-HHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 328 PSLISASIALKAVAVND-E----ICKS-VAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 328 ~v~~~a~~aL~~La~~~-e----~c~~-I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
.+++.++++|.+|+..+ + +.+. |.+.||++.|+++|.+ ++.++.+.++.+|++|
T Consensus 299 ~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~----~~~~v~~~A~~aL~nl 358 (457)
T 1xm9_A 299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQS----GNSDVVRSGASLLSNM 358 (457)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhC----CCHhHHHHHHHHHHHH
Confidence 56677899999998753 2 3233 4478999999999976 2348999999999975
No 13
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.90 E-value=1.9e-23 Score=214.93 Aligned_cols=335 Identities=14% Similarity=0.160 Sum_probs=255.1
Q ss_pred cCChhhhhHHhhhh----hccCCCCC-----CCCCCccccccccccCCCcccCCCchhhhhhhH---HHHHHHHHhh---
Q 016639 12 FSNSEQIDFQKQSS----LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQ---EAFDEVVKEN--- 76 (385)
Q Consensus 12 ~~~~~~~~~~~~~~----~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isq---etfd~~v~en--- 76 (385)
.|++.+.++.+.+. ++.+++|+ ..|+||..+.||...++...++.+..+-..|+. +.-+.++..+
T Consensus 97 ~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~ 176 (530)
T 1wa5_B 97 NSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVP 176 (530)
T ss_dssp SCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHH
Confidence 46678888888888 35555666 579999999999987777777665533333332 2224444433
Q ss_pred --HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHH--HHHHHHHHHhhcCCCCCCcccHHHHHHHHHH
Q 016639 77 --MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI--QSLERLKQLDLNSKDKFSDEDLNEMMGLFDK 152 (385)
Q Consensus 77 --i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~--~al~~L~~~l~~~~~~~~~~~~~~~~~al~~ 152 (385)
+.-+.-+..+..+.|+ +-|+||..+.+... ..+. .++..|...+... +.+....++|.
T Consensus 177 ~Lv~lL~~~~~~vr~~A~-------~aL~~l~~~~~~~~----~~~~~~~~l~~L~~ll~~~-------~~~v~~~a~~~ 238 (530)
T 1wa5_B 177 LFIQLLYTGSVEVKEQAI-------WALGNVAGDSTDYR----DYVLQCNAMEPILGLFNSN-------KPSLIRTATWT 238 (530)
T ss_dssp HHHHHHHHCCHHHHHHHH-------HHHHHHHTTCHHHH----HHHHHTTCHHHHHHGGGSC-------CHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHH-------HHHHHHhCCCccch----HHHHHcCcHHHHHHHhccC-------CHHHHHHHHHH
Confidence 2233323445556666 44556654432110 0111 3566677776543 67889999999
Q ss_pred HHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCC
Q 016639 153 LIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNE 231 (385)
Q Consensus 153 L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~ 231 (385)
|..+|.. ...........|++|.|+.+|.+ .+..++..|+++|++|+.+.+. .+.+++.|+++.|+.+|.+ .
T Consensus 239 L~~L~~~--~~~~~~~~~~~~~l~~L~~lL~~---~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~--~ 311 (530)
T 1wa5_B 239 LSNLCRG--KKPQPDWSVVSQALPTLAKLIYS---MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSH--E 311 (530)
T ss_dssp HHHHHCC--SSSCCCHHHHGGGHHHHHHHTTC---CCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGC--S
T ss_pred HHHHhCC--CCCCCcHHHHHhHHHHHHHHHcC---CCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCC--C
Confidence 9999986 32334455668999999999987 4789999999999999987544 4678889999999999985 5
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhc
Q 016639 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI 311 (385)
Q Consensus 232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~ 311 (385)
+..++..++++|.+++.+++...+.+++.|+++.|+.+|.+.+..++++|||+|.+|+..+. ++...+++.
T Consensus 312 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~---------~~~~~~~~~ 382 (530)
T 1wa5_B 312 STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT---------EQIQAVIDA 382 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---------HHHHHHHHC
Confidence 78999999999999999999999999999999999999999888999999999999986432 445567889
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC--h--HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 312 GIARALVHSLHAGLSSPSLISASIALKAVAVN--D--EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 312 Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~--~--e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
|++++|+.+|... +..++..++++|.+++.. + +.+..+.+.|+++.|+.++.+ .+..+...++.+|.+|
T Consensus 383 ~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~----~~~~v~~~al~aL~~l 455 (530)
T 1wa5_B 383 NLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEI----ADNRIIEVTLDALENI 455 (530)
T ss_dssp TCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTT----CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence 9999999999874 778999999999999864 4 788999999999999999875 2447889999888764
No 14
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.90 E-value=3.4e-22 Score=193.02 Aligned_cols=226 Identities=15% Similarity=0.131 Sum_probs=185.0
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHH-HHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCc
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS-ICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGP 219 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~-lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi 219 (385)
+.+....++..|..++. +.+|...+.+.|++|+|+. +|++ +++.++..|+|+|++++.+++. ++.+++.||+
T Consensus 53 ~~e~k~~Al~~L~~lv~---~~dna~~~~~~G~l~~Lv~~lL~s---~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l 126 (296)
T 1xqr_A 53 DQQEREGALELLADLCE---NMDNAADFCQLSGMHLLVGRYLEA---GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGAL 126 (296)
T ss_dssp HHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHTTTTC---SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred CHHHHHHHHHHHHHHHh---ChhhHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCH
Confidence 55788899999999998 4778888899999999999 9987 4889999999999999987664 5788999999
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhh
Q 016639 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVAS 299 (385)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g 299 (385)
+.|+++|++. .+..+...++|+|++++.+++.+++.|+++|++++|+.+|++++..++++|||+|++|+.+++
T Consensus 127 ~~Ll~LL~~~-~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~------ 199 (296)
T 1xqr_A 127 RKLLRLLDRD-ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP------ 199 (296)
T ss_dssp HHHHHHHHHC-SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG------
T ss_pred HHHHHHHccC-CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCh------
Confidence 9999999863 368899999999999999999999999999999999999999888999999999999985433
Q ss_pred hchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcC--cH-HHHHHHHHhcCCcC-cHHHH
Q 016639 300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG--GI-DALLRCIDDSGLQG-NKTVA 375 (385)
Q Consensus 300 ~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~G--Gl-~~Lv~ll~~~~~~~-~~~v~ 375 (385)
++...+++.|++++|+.+|+.. +..++..++.+|.+|+...+........+ .+ ..|.+.+..-..++ +.+++
T Consensus 200 ---~~~~~vv~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~ 275 (296)
T 1xqr_A 200 ---EHKGTLCSMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEEL 275 (296)
T ss_dssp ---GGHHHHHHTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHH
T ss_pred ---HHHHHHHHcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHH
Confidence 4566789999999999999885 66799999999999988743332222222 12 22323333322233 57999
Q ss_pred HHHHHHHhc
Q 016639 376 RICCSLLSK 384 (385)
Q Consensus 376 k~a~~~Lr~ 384 (385)
+.|..+|.+
T Consensus 276 ~~~~~il~~ 284 (296)
T 1xqr_A 276 EFCEKLLQT 284 (296)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 15
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.90 E-value=3.7e-22 Score=179.89 Aligned_cols=195 Identities=17% Similarity=0.219 Sum_probs=172.6
Q ss_pred cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 016639 172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN 250 (385)
Q Consensus 172 ~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~ 250 (385)
.|.+|.|+.+|++ .+..++..|+++|++++.+++. +..+++.|+++.|+++|++ ++.+++..++++|.+++.++
T Consensus 11 ~~~~~~l~~LL~s---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~ 85 (210)
T 4db6_A 11 GSELPQMVQQLNS---PDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGG 85 (210)
T ss_dssp --CHHHHHHHTTC---SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSC
T ss_pred cchhHHHHHHhcC---CCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCC
Confidence 5789999999987 5889999999999999966544 5788999999999999986 47899999999999999999
Q ss_pred hhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHH
Q 016639 251 EVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSL 330 (385)
Q Consensus 251 e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~ 330 (385)
+.+++.+++.|+++.|+.+|++++..+++.|||+|++|+.+++ ++...+.+.|++++|+++|+.. +..++
T Consensus 86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~ll~~~-~~~v~ 155 (210)
T 4db6_A 86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN---------EQIQAVIDAGALPALVQLLSSP-NEQIL 155 (210)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCH---------HHHHHHHHcCcHHHHHHHHcCC-CHHHH
Confidence 9999999999999999999999988999999999999997554 3445678999999999999885 78899
Q ss_pred HHHHHHHHHhhcC-hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 331 ISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 331 ~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
..++++|.+++.. ++.+..+.+.|+++.|++++.+ .+..+.+.|+.+|++|
T Consensus 156 ~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 156 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH----ENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhC----CCHHHHHHHHHHHHHH
Confidence 9999999999988 6889999999999999999975 3448999999999875
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.89 E-value=3e-22 Score=199.55 Aligned_cols=344 Identities=15% Similarity=0.164 Sum_probs=250.2
Q ss_pred cCChhhhhHHhhhhh----ccCCCCC-----CC-CCCccccccccccCCCcccCCCchhhhhhhH---HHHHHHHHhh--
Q 016639 12 FSNSEQIDFQKQSSL----ITLPQPR-----AH-PFVPKDHPFFVRTDLTAHEMGPPKTVRTISQ---EAFDEVVKEN-- 76 (385)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~isq---etfd~~v~en-- 76 (385)
.|++++.+..+...| +...+|+ .. |++|..+.+|+..++...+..+..+-..|+. +.-..+++.+
T Consensus 30 ~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i 109 (450)
T 2jdq_A 30 FSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAV 109 (450)
T ss_dssp HSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHH
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCH
Confidence 466777788887774 3356776 44 9999999999887676666554433333321 2223334333
Q ss_pred ---HHhcCCChhHHHHHHHHHHHH--------------cC-CC---------------------CCCCccCC-CCCCCCC
Q 016639 77 ---MEDLGMEPTEALQDAIQTLSL--------------QG-VD---------------------LSGIVKCV-PGESSLK 116 (385)
Q Consensus 77 ---i~~f~m~~~eAl~~aI~qfe~--------------QG-vd---------------------Lsni~~~~-~~~~~~~ 116 (385)
+.-+.-+-.+..+.|+.-+.. .| +. |+|+.... |....
T Consensus 110 ~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-- 187 (450)
T 2jdq_A 110 PIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF-- 187 (450)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCG--
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCH--
Confidence 333443333333444433210 11 11 11111111 11100
Q ss_pred CchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHH
Q 016639 117 DNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSC 196 (385)
Q Consensus 117 ~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~A 196 (385)
.-+..++..|...+... +.+....++|.|..+|.. .++++..+.+.|++|.|+.+|++ .+..++..|
T Consensus 188 -~~~~~~l~~L~~~l~~~-------~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~---~~~~v~~~a 254 (450)
T 2jdq_A 188 -AKVSPCLNVLSWLLFVS-------DTDVLADACWALSYLSDG--PNDKIQAVIDAGVCRRLVELLMH---NDYKVVSPA 254 (450)
T ss_dssp -GGTGGGHHHHHHHTTCC-------CHHHHHHHHHHHHHHTSS--SHHHHHHHHHTTTHHHHHHHTTC---SCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHccC-------CHHHHHHHHHHHHHHHCC--CcHHHHHHHHcCcHHHHHHHHCC---CchhHHHHH
Confidence 00113444455555432 677888999999999986 67778888899999999999986 588999999
Q ss_pred HHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh
Q 016639 197 LKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN 275 (385)
Q Consensus 197 l~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~ 275 (385)
+++|++++.+.+. ++.+++.|+++.|+++|.+ ++..+...++++|.+++.+++.+++.+++.|+++.|+.+|.+.+.
T Consensus 255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~ 332 (450)
T 2jdq_A 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF 332 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCH
T ss_pred HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCH
Confidence 9999999988654 3667889999999999986 478999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-----------
Q 016639 276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND----------- 344 (385)
Q Consensus 276 ~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~----------- 344 (385)
+++++|||+|.+|+.. +..++.+.+++.|++++|+++|... +..++..++++|.+++...
T Consensus 333 ~v~~~a~~~L~~l~~~--------~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~ 403 (450)
T 2jdq_A 333 RTRKEAAWAITNATSG--------GSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLGEQEAKRNGTGI 403 (450)
T ss_dssp HHHHHHHHHHHHHHHH--------CCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred HHHHHHHHHHHHHHcC--------CCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhchhhhhccccch
Confidence 9999999999999852 2335667788899999999999875 7789999999999997542
Q ss_pred -HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 345 -EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 345 -e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
.++..|.+.||++.|..++.+ +|..+.+.+..+|.++
T Consensus 404 ~~~~~~l~~~g~~~~l~~l~~~----~~~~v~~~a~~~l~~~ 441 (450)
T 2jdq_A 404 NPYCALIEEAYGLDKIEFLQSH----ENQEIYQKAFDLIEHY 441 (450)
T ss_dssp CHHHHHHHHHHCHHHHHHHHCH----HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence 468899999999999886643 5568999999998763
No 17
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.89 E-value=5.1e-23 Score=215.06 Aligned_cols=345 Identities=15% Similarity=0.150 Sum_probs=239.7
Q ss_pred cCChhhhhHHhhhh---hccCCCCC-----CCCCCccccccccccCCCcccCCCchhhhhhh----HHHHHHHHHhh---
Q 016639 12 FSNSEQIDFQKQSS---LITLPQPR-----AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTIS----QEAFDEVVKEN--- 76 (385)
Q Consensus 12 ~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is----qetfd~~v~en--- 76 (385)
.|++++.|+.+... |+....+. ..|-||.+|.+|.. ++...|..++.+-+.|+ .+.=+++++.+
T Consensus 58 ~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s-~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp 136 (584)
T 3l6x_A 58 GFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDH-PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVP 136 (584)
T ss_dssp TCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGC-SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCC-CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHH
Confidence 46688889988877 44322222 67999999999965 55666666554444444 44435555555
Q ss_pred --HHhcCC-ChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHH-HHHHHHHHHhh----cCC-------CCCCcc
Q 016639 77 --MEDLGM-EPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLI-QSLERLKQLDL----NSK-------DKFSDE 141 (385)
Q Consensus 77 --i~~f~m-~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~-~al~~L~~~l~----~~~-------~~~~~~ 141 (385)
+..+.- ...+..+.|..-+ |.||.- +. ....+. .++..|...+. ... +.....
T Consensus 137 ~LV~LL~s~~~~~~~e~aa~aL----~nLS~~----~~----~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~ 204 (584)
T 3l6x_A 137 ALVRLLRKARDMDLTEVITGTL----WNLSSH----DS----IKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIE 204 (584)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHH----HHHTTS----GG----GHHHHHHHTHHHHHHHTHHHHHCCC----------CCC
T ss_pred HHHHHHcCCCCHHHHHHHHHHH----HHHhCC----ch----hhHHHHhccHHHHHHHHhcccccccccccccccccccc
Confidence 444443 2345555544221 344431 10 001121 45555655441 000 001112
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcc---cCCcHhHHHHHHHHHHHHhcCCccc-h-----
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKM---RCGSKRVLDSCLKTMALLVHDVQST-E----- 211 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~---~~~d~~vl~~Al~aLa~L~~~~~~~-~----- 211 (385)
+.+.+..+.++|++++.. ++++|..+.+. |+++.||.+|+.. ...+.+.+.+|+++|.||+.+.+.. +
T Consensus 205 d~~V~~nAa~~L~NLs~~--~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~ 282 (584)
T 3l6x_A 205 WESVLTNTAGCLRNVSSE--RSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY 282 (584)
T ss_dssp CHHHHHHHHHHHHHHTSS--CHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred cHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence 568888999999999986 77878888885 5578999999853 1135578999999999998652100 0
Q ss_pred -----------hHhhCCC---------cHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC----hhhHHHHHhCCChHHHH
Q 016639 212 -----------TFRTGGG---------PKLLVNILIDGNEDPEILNSGFAVVAASATGN----EVVKESYMELKIDELIL 267 (385)
Q Consensus 212 -----------~i~~~gg---------i~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~----e~nr~~iv~~G~i~~Lv 267 (385)
.+.+.+| ++.++.+|+.. .+.+++..|+|+|+++|.++ +.++..|.+.|+++.|+
T Consensus 283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s-~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv 361 (584)
T 3l6x_A 283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES-KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA 361 (584)
T ss_dssp -------------CCCCGGGGGGSHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred hhhcccccccccccCchhHHHHhcccHHHHHHHHHccC-CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence 1122334 55678899764 57899999999999999876 34555666789999999
Q ss_pred HHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-------CHHHHHHHHHHHHHh
Q 016639 268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-------SSPSLISASIALKAV 340 (385)
Q Consensus 268 ~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-------~~~v~~~a~~aL~~L 340 (385)
.+|.+.+.++++.|||+|+||+.+.++|.. | ..|+|+.||.+|.... +..++..+|++|.+|
T Consensus 362 ~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~----------I-~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL 430 (584)
T 3l6x_A 362 DLLTNEHERVVKAASGALRNLAVDARNKEL----------I-GKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEV 430 (584)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTCSCHHH----------H-HHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHhCChhHHHH----------H-HhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHH
Confidence 999999989999999999999988776642 4 6799999999998752 346788999999999
Q ss_pred hc-ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 341 AV-NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 341 a~-~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+. ++++.+.|.++|||+.|+.+++++.... .+.+.|+.+|++|
T Consensus 431 ~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~--~v~k~Aa~vL~nl 474 (584)
T 3l6x_A 431 IAENLEAAKKLRETQGIEKLVLINKSGNRSE--KEVRAAALVLQTI 474 (584)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTCSSSCH--HHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHCCChHHHHHHHhCCCCCh--HHHHHHHHHHHHH
Confidence 75 4699999999999999999998753344 8999999998864
No 18
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.89 E-value=9.1e-22 Score=202.66 Aligned_cols=237 Identities=12% Similarity=0.107 Sum_probs=200.3
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~ 202 (385)
.++.|...+.+. +.+.+..++..+|.+...+.+|. ...+.+.|+||+||++|+.. +++.++..|+|+|+|
T Consensus 58 ~i~~~v~~l~s~-------d~~~q~~a~~~~rklls~e~~pp-i~~ii~~G~ip~LV~lL~~~--~~~~lq~~Aa~aL~n 127 (510)
T 3ul1_B 58 SVEDIVKGINSN-------NLESQLQATQAARKLLSREKQPP-IDNIIRAGLIPKFVSFLGKT--DCSPIQFESAWALTN 127 (510)
T ss_dssp CHHHHHHHHTSS-------CHHHHHHHHHHHHHHHTCSSCCC-HHHHHHTTHHHHHHHHTTCT--TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCC-------CHHHHHHHHHHHHHHhcCCCCch-HHHHHHCCCHHHHHHHHCCC--CCHHHHHHHHHHHHH
Confidence 367777777765 89999999999998776523444 66788999999999999864 467899999999999
Q ss_pred HhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-----H
Q 016639 203 LVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-----D 276 (385)
Q Consensus 203 L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-----~ 276 (385)
|+.|++. +..+++.|++|.|+++|++ ++.+++..++|+|++++..++.+|..+++.|++++|+.+|..... .
T Consensus 128 ias~~~e~~~~vv~~GaIp~Lv~lL~s--~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~ 205 (510)
T 3ul1_B 128 IASGTSEQTKAVVDGGAIPAFISLLAS--PHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205 (510)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred HhcCCHHHHHHHHHCCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHH
Confidence 9988655 5889999999999999986 578999999999999998889999999999999999999987643 5
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHHHHcCc
Q 016639 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGG 355 (385)
Q Consensus 277 v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I~e~GG 355 (385)
++++++|+|++++.+.+.+.. .....|+++.|+.+|... ++.++..+|++|++|+..+ +..+.+.+.|+
T Consensus 206 ~~~~a~~~L~nl~~~~~~~~~---------~~~~~~~lp~L~~LL~~~-~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~ 275 (510)
T 3ul1_B 206 YLRNLTWTLSNLCRNKNPAPP---------LDAVEQILPTLVRLLHHN-DPEVLADSCWAISYLTDGPNERIEMVVKKGV 275 (510)
T ss_dssp HHHHHHHHHHHHHCCCSSCCC---------HHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhhcccchhH---------HHHHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhchhhhHHHHHhccc
Confidence 788999999999987766554 123467899999999874 7789999999999999865 66788999999
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 356 IDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 356 l~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
++.|+++|.+ .+..+...++.+|.+|
T Consensus 276 i~~Lv~lL~~----~~~~v~~~al~aL~nl 301 (510)
T 3ul1_B 276 VPQLVKLLGA----TELPIVTPALRAIGNI 301 (510)
T ss_dssp HHHHHHHHTC----SCHHHHHHHHHHHHHH
T ss_pred chhhhhhhcC----CChhhhhHHHHHHHHh
Confidence 9999999975 3347899999998764
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.89 E-value=5.1e-22 Score=203.78 Aligned_cols=332 Identities=14% Similarity=0.123 Sum_probs=250.9
Q ss_pred hhhhHHhhhhhccCCC--CC------CCCCCccccccccccCCCcccCCCchhhhhhhH---HHHHHHHHhh-----HHh
Q 016639 16 EQIDFQKQSSLITLPQ--PR------AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTISQ---EAFDEVVKEN-----MED 79 (385)
Q Consensus 16 ~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~isq---etfd~~v~en-----i~~ 79 (385)
.+.++.+...|...-. |. .+|.||..+.+|... +...+..+..+-..|+. +.-+.++..+ +..
T Consensus 132 ~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~l 210 (528)
T 4b8j_A 132 PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQ 210 (528)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHH
Confidence 6778777776444222 11 569999999999863 33333222222333432 2223333333 333
Q ss_pred c-CCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhc
Q 016639 80 L-GMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCG 158 (385)
Q Consensus 80 f-~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~ 158 (385)
+ .-...+.++.|+ +-|+|++...|..... .+..++..|...+... +.+....+++.|..++.
T Consensus 211 L~~~~~~~v~~~a~-------~~L~~L~~~~~~~~~~---~~~~~l~~L~~lL~~~-------~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 211 LNEHTKLSMLRNAT-------WTLSNFCRGKPQPSFE---QTRPALPALARLIHSN-------DEEVLTDACWALSYLSD 273 (528)
T ss_dssp CCTTCCHHHHHHHH-------HHHHHHHCSSSCCCHH---HHTTHHHHHHHHTTCC-------CHHHHHHHHHHHHHHTS
T ss_pred HhcCCCHHHHHHHH-------HHHHHHHcCCCCCcHH---HHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHc
Confidence 3 223445666666 4455665554332111 1225677788877654 78899999999999998
Q ss_pred CCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHH
Q 016639 159 GNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILN 237 (385)
Q Consensus 159 ~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~ 237 (385)
. .+.....+.+.|++|.|+.+|.+ .+..+...|+++|++|+.+.+. ++.+++.|+++.|+.+|.+. .+..++.
T Consensus 274 ~--~~~~~~~~~~~g~v~~Lv~lL~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~~v~~ 347 (528)
T 4b8j_A 274 G--TNDKIQAVIEAGVCPRLVELLLH---PSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQN-LKKSIKK 347 (528)
T ss_dssp S--CHHHHHHHHHTTCHHHHHHHTTC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSC-CCHHHHH
T ss_pred C--CHHHHHHHHHcCHHHHHHHHHcC---CChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCC-CcHHHHH
Confidence 6 66666788899999999999987 4788999999999999987654 46788999999999999863 2789999
Q ss_pred HHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHH
Q 016639 238 SGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARAL 317 (385)
Q Consensus 238 ~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~L 317 (385)
.++|+|.+++.+++.+++.+++.|+++.|+.+|.+++..++++|+|+|.+|+.. +..++..++++.|++++|
T Consensus 348 ~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~--------~~~~~~~~l~~~~~i~~L 419 (528)
T 4b8j_A 348 EACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG--------GSHDQIKYLVSEGCIKPL 419 (528)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH--------SCHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC--------CCHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999998889999999999999853 234667788899999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhcCh------------HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 318 VHSLHAGLSSPSLISASIALKAVAVND------------EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 318 v~lL~~~~~~~v~~~a~~aL~~La~~~------------e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+.+|... ++.++..++.+|.++.... .++..|.+.||++.|..++. +.|.++.+.|..+|.+
T Consensus 420 ~~lL~~~-d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~----~~~~~v~~~a~~il~~ 493 (528)
T 4b8j_A 420 CDLLICP-DIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQS----HDNNEIYEKAVKILEA 493 (528)
T ss_dssp HHGGGCS-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGG----CSSHHHHHHHHHHHHH
T ss_pred HHHHcCC-CHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHc----CCCHHHHHHHHHHHHH
Confidence 9999884 7788999999999997532 47999999999999988643 4566899999998865
No 20
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.89 E-value=1.5e-21 Score=201.61 Aligned_cols=239 Identities=10% Similarity=0.131 Sum_probs=201.7
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
.++..|..++... .+.+.+.+++|+|..++.. ++.++..+++.|++|.|+.+|.+ .+..+...|+|+|+
T Consensus 119 G~ip~Lv~lL~~~------~~~~~q~~Aa~aL~nia~~--~~~~~~~vv~~Gaip~Lv~LL~s---~~~~v~e~A~~aL~ 187 (529)
T 3tpo_A 119 GLIPKFVSFLGKT------DCSPIQFESAWALTNIASG--TSEQTKAVVDGGAIPAFISLLAS---PHAHISEQAVWALG 187 (529)
T ss_dssp THHHHHHHHHTCT------TCHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCC------CCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 4688889888643 1578889999999999997 88899999999999999999988 48899999999999
Q ss_pred HHhcCCcc-chhHhhCCCcHHHHHHHhcC---------------------------------------------CCCHHH
Q 016639 202 LLVHDVQS-TETFRTGGGPKLLVNILIDG---------------------------------------------NEDPEI 235 (385)
Q Consensus 202 ~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~---------------------------------------------~~~~~v 235 (385)
+|+.+.+. +..+++.|+++.|+.+|... .++.++
T Consensus 188 nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v 267 (529)
T 3tpo_A 188 NIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV 267 (529)
T ss_dssp HHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHH
T ss_pred HHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHH
Confidence 99876543 56677777777776665321 235567
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHH
Q 016639 236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIAR 315 (385)
Q Consensus 236 ~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~ 315 (385)
+..+||+|++++..++++++.+++.|+++.|+.+|.+.+..++..++++|.+|+..++. +...+.+.|+++
T Consensus 268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~---------~~~~i~~~g~l~ 338 (529)
T 3tpo_A 268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE---------QTQKVIDAGALA 338 (529)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH---------HHHHHHHTTGGG
T ss_pred HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchH---------HHHHHhhcccHH
Confidence 88899999999998888899999999999999999998889999999999999876653 344678999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 316 ALVHSLHAGLSSPSLISASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 316 ~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+|+.+|++. ++.++..+|++|++++..+ +.+..+.+.|+++.|+.++.+. +..+.+.|+.+|.||
T Consensus 339 ~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~----~~~v~~~A~~aL~nl 404 (529)
T 3tpo_A 339 VFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA----DFKTQKAAAWAITNY 404 (529)
T ss_dssp GHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS----CHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC----CHHHHHHHHHHHHHH
Confidence 999999874 7789999999999998764 7788999999999999999862 347899999998874
No 21
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.89 E-value=4e-22 Score=214.82 Aligned_cols=235 Identities=14% Similarity=0.112 Sum_probs=199.2
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
.++..|...+.+. +.+...+++|.|.+++. ++++|..+.++|++|+|+.+|++ ++...+..|.|+|+
T Consensus 495 GaVp~LV~LL~s~-------s~~vqe~Aa~aL~NLA~---d~~~r~~Vv~~Gaip~Lv~LL~s---~~~~~k~~Aa~AL~ 561 (810)
T 3now_A 495 GITTALCALAKTE-------SHNSQELIARVLNAVCG---LKELRGKVVQEGGVKALLRMALE---GTEKGKRHATQALA 561 (810)
T ss_dssp THHHHHHHHHTCC-------CHHHHHHHHHHHHHHHT---SHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHcCC-------CHHHHHHHHHHHHHHcC---CHHHHHHHHHCCCHHHHHHHHcc---CCHHHHHHHHHHHH
Confidence 4788888888654 78899999999999996 68899999999999999999987 47788999999999
Q ss_pred HHhcCCccchhH---hhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHH
Q 016639 202 LLVHDVQSTETF---RTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSI 278 (385)
Q Consensus 202 ~L~~~~~~~~~i---~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~ 278 (385)
+|+.+.+....+ ...+++++|+++|... .+...+..++|+|.+++..++++++.|+++|+++.|+.+|.+.+..++
T Consensus 562 nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~-~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq 640 (810)
T 3now_A 562 RIGITINPEVSFSGQRSLDVIRPLLNLLQQD-CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT 640 (810)
T ss_dssp HHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT-SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHH
T ss_pred HHhcCCChhhhhcchhhhcHHHHHHHHhCCC-CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHH
Confidence 998754332222 1246999999999742 234445689999999999989999999999999999999999888899
Q ss_pred HHHHHHHHHhcCCCccchhhhhchhHHHHHHh-cCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHH-cCc
Q 016639 279 QSLYDAIRVLLTPDDDQVVASQVYGYARRFAK-IGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAE-NGG 355 (385)
Q Consensus 279 k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e-~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e-~GG 355 (385)
++|+++|+||+.+++.+. .+++ .|++++|+.+|... +..++..+|++|++|+. +++.++.|++ .||
T Consensus 641 ~~A~~~L~NLa~~~~~~~----------~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~ 709 (810)
T 3now_A 641 RAAAQCLCNLVMSEDVIK----------MFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASW 709 (810)
T ss_dssp HHHHHHHHHHTTSHHHHH----------HHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTH
T ss_pred HHHHHHHHHHhCChHHHH----------HHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 999999999998776543 4565 68999999999884 77899999999999998 6789999999 899
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 356 IDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 356 l~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
++.|++++++ .+.++.+.++.+|.||
T Consensus 710 I~~Lv~LL~s----~d~~vq~~A~~aL~NL 735 (810)
T 3now_A 710 LDILHTLIAN----PSPAVQHRGIVIILNM 735 (810)
T ss_dssp HHHHHHHHTC----SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC----CCHHHHHHHHHHHHHH
Confidence 9999999975 3448999999999874
No 22
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=186.59 Aligned_cols=196 Identities=12% Similarity=0.129 Sum_probs=164.7
Q ss_pred cHHHHHHHHhcccCCcH--hHHHHHHHHHHHHhcCCc-cchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 016639 174 GVELVCSICYKMRCGSK--RVLDSCLKTMALLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN 250 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~--~vl~~Al~aLa~L~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~ 250 (385)
.+|.||++|++. +. .++..|.++|.+|+.+++ .+..|++.||||.|+++|++ ++.+++..|+|+|++++.++
T Consensus 9 ~i~~lV~lL~s~---~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s--~~~~vq~~Aa~aL~nLa~~~ 83 (233)
T 3tt9_A 9 TLERAVSMLEAD---HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKV--QNEDVQRAVCGALRNLVFED 83 (233)
T ss_dssp CHHHHHHTCCSS---CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHhCCC---CchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCC
Confidence 489999999884 55 788889999999996654 46889999999999999986 57899999999999999989
Q ss_pred hhhHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHh---cC--
Q 016639 251 EVVKESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLH---AG-- 324 (385)
Q Consensus 251 e~nr~~iv~~G~i~~Lv~lL~~-~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~---~~-- 324 (385)
++||..|+++|+||+|+.+|++ ++.+++++|+++|++|+..+++|. .|++ ++|++|++++. ++
T Consensus 84 ~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~----------~i~~-~~i~~Lv~ll~~p~sG~~ 152 (233)
T 3tt9_A 84 NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN----------LMIT-EALLTLTENIIIPFSGWP 152 (233)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH----------HHHH-HHHHHHCCCCCHHHHCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH----------HHHh-ccHHHHHHHHhccccCCc
Confidence 9999999999999999999985 567899999999999998887765 3666 47999998763 11
Q ss_pred ----------CCHHHHHHHHHHHHHhhcC-hHHHHHHHHcCc-HHHHHHHHHhcCC--cCcHHHHHHHHHHHhcC
Q 016639 325 ----------LSSPSLISASIALKAVAVN-DEICKSVAENGG-IDALLRCIDDSGL--QGNKTVARICCSLLSKV 385 (385)
Q Consensus 325 ----------~~~~v~~~a~~aL~~La~~-~e~c~~I~e~GG-l~~Lv~ll~~~~~--~~~~~v~k~a~~~Lr~l 385 (385)
.+..++.++.++|++|+.. +++++.|.+++| |+.|+.+++.+.. ..+...++.|..+||||
T Consensus 153 ~~~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nL 227 (233)
T 3tt9_A 153 EGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNL 227 (233)
T ss_dssp GGGCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHH
Confidence 1458999999999999875 599999999865 6999999987521 11236889999999986
No 23
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.88 E-value=2.5e-21 Score=202.29 Aligned_cols=262 Identities=10% Similarity=0.101 Sum_probs=194.4
Q ss_pred CCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHH
Q 016639 101 DLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS 180 (385)
Q Consensus 101 dLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~ 180 (385)
+|..+-+..|++..-. . ..+..|...+.+. +.+.+.++++.|+.+|.+ ++++|..+.+.|+||+||+
T Consensus 31 ~~~~~~~~~~~~~~~~-~---~~i~~LV~~L~s~-------~~~~q~~Aa~~L~~La~~--~~~~k~~V~~~G~Ip~LV~ 97 (584)
T 3l6x_A 31 SLDSLRKGGPPPPNWR-Q---PELPEVIAMLGFR-------LDAVKSNAAAYLQHLCYR--NDKVKTDVRKLKGIPVLVG 97 (584)
T ss_dssp ---------CCCCCCC-C---CCHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHhcCCCCCCcc-c---ccHHHHHHHHCCC-------CHHHHHHHHHHHHHHHcC--ChHHHHHHHHcCCcHHHHH
Confidence 5556666555432221 1 2366677777654 778889999999999997 8999999999999999999
Q ss_pred HHhcccCCcHhHHHHHHHHHHHHhcC--CccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 016639 181 ICYKMRCGSKRVLDSCLKTMALLVHD--VQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYM 258 (385)
Q Consensus 181 lL~~~~~~d~~vl~~Al~aLa~L~~~--~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv 258 (385)
+|++ ++..++..|+++|.+|+.+ .+.+..|+++|||+.|+++|+++ .+.+++..++++|++++. ++++|..|+
T Consensus 98 LL~s---~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~-~~~~~~e~aa~aL~nLS~-~~~~k~~I~ 172 (584)
T 3l6x_A 98 LLDH---PKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKA-RDMDLTEVITGTLWNLSS-HDSIKMEIV 172 (584)
T ss_dssp GGGC---SSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHC-CSHHHHHHHHHHHHHHTT-SGGGHHHHH
T ss_pred HHCC---CCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCC-CCHHHHHHHHHHHHHHhC-CchhhHHHH
Confidence 9998 5889999999999999985 45578999999999999999974 367899999999999875 889999999
Q ss_pred hCCChHHHHHHHc-----------------c-CChHHHHHHHHHHHHhcCCCcc-chhhhhc------------------
Q 016639 259 ELKIDELILEILS-----------------R-QRNDSIQSLYDAIRVLLTPDDD-QVVASQV------------------ 301 (385)
Q Consensus 259 ~~G~i~~Lv~lL~-----------------~-~~~~v~k~A~~aL~~Lt~~Dd~-rv~~g~a------------------ 301 (385)
+ |++++|+.+|. + ....++++|+++|+||+.+++. |......
T Consensus 173 ~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~ 251 (584)
T 3l6x_A 173 D-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQK 251 (584)
T ss_dssp H-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred h-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhccc
Confidence 6 67999999872 1 1248999999999999987643 4322110
Q ss_pred ------hhHHHHH----------------------------------------HhcCcHHHHHHHHhcCCCHHHHHHHHH
Q 016639 302 ------YGYARRF----------------------------------------AKIGIARALVHSLHAGLSSPSLISASI 335 (385)
Q Consensus 302 ------~~~a~~I----------------------------------------~e~Ggi~~Lv~lL~~~~~~~v~~~a~~ 335 (385)
-+++... .+.+++++|+.+|+...++.+++.+++
T Consensus 252 ~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~ 331 (584)
T 3l6x_A 252 DSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAG 331 (584)
T ss_dssp CCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHH
Confidence 0111110 011335667788876556778899999
Q ss_pred HHHHhhcCh-----HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 336 ALKAVAVND-----EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 336 aL~~La~~~-----e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+|.+|+..+ .+...|.+.||++.|+++|.. .+..+.+.+|.+|+||
T Consensus 332 AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s----~~~~v~~~A~~aL~nL 382 (584)
T 3l6x_A 332 AIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTN----EHERVVKAASGALRNL 382 (584)
T ss_dssp HHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence 999997542 344566678999999999975 2348999999999985
No 24
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.88 E-value=2.2e-21 Score=199.54 Aligned_cols=332 Identities=13% Similarity=0.132 Sum_probs=249.6
Q ss_pred hhhhhHHhhhhhccCCC--CC------CCCCCccccccccccCCCcccCCCchhhhhhh---HHHHHHHHHhh-----HH
Q 016639 15 SEQIDFQKQSSLITLPQ--PR------AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTIS---QEAFDEVVKEN-----ME 78 (385)
Q Consensus 15 ~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is---qetfd~~v~en-----i~ 78 (385)
+.+.++.+...|...-. |. ..|.||..+.+|... +...+..+..+-..|+ .+.-+.++..+ +.
T Consensus 144 ~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ 222 (530)
T 1wa5_B 144 PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG 222 (530)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHH
Confidence 56778777777554332 21 479999999999853 2222222221222222 12222333333 33
Q ss_pred hcCCChhHHHHHHHHHHHHcCCCCCCCccCC-CCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHh
Q 016639 79 DLGMEPTEALQDAIQTLSLQGVDLSGIVKCV-PGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELC 157 (385)
Q Consensus 79 ~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~-~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc 157 (385)
.+.-...+..+.|+ +-|++++... +.... .....++..|...+... +.+....+++.|..++
T Consensus 223 ll~~~~~~v~~~a~-------~~L~~L~~~~~~~~~~---~~~~~~l~~L~~lL~~~-------d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 223 LFNSNKPSLIRTAT-------WTLSNLCRGKKPQPDW---SVVSQALPTLAKLIYSM-------DTETLVDACWAISYLS 285 (530)
T ss_dssp GGGSCCHHHHHHHH-------HHHHHHHCCSSSCCCH---HHHGGGHHHHHHHTTCC-------CHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHH-------HHHHHHhCCCCCCCcH---HHHHhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence 33334556667777 4455665443 22111 11125677777777654 6788899999999999
Q ss_pred cCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHH
Q 016639 158 GGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEIL 236 (385)
Q Consensus 158 ~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~ 236 (385)
.. .++.+..+.+.|++|.|+.+|.+ .+..+...|+++|++++.+.+. .+.+++.|+++.|+.+|.+. +..+.
T Consensus 286 ~~--~~~~~~~~~~~~~v~~Lv~lL~~---~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr 358 (530)
T 1wa5_B 286 DG--PQEAIQAVIDVRIPKRLVELLSH---ESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIK 358 (530)
T ss_dssp SS--CHHHHHHHHHTTCHHHHHHGGGC---SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHH
T ss_pred CC--CHHHHHHHHhcCcHHHHHHHHCC---CChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHH
Confidence 87 77778888899999999999986 4788999999999999987654 46778899999999999864 78999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhch--hHHHHHHhcCcH
Q 016639 237 NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVY--GYARRFAKIGIA 314 (385)
Q Consensus 237 ~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~--~~a~~I~e~Ggi 314 (385)
..++|+|++++.+++.+++.+++.|+++.|+.+|...+..+++.|+|+|.+|+.. +.+ ++.+.+++.|++
T Consensus 359 ~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~--------~~~~~~~~~~l~~~~~l 430 (530)
T 1wa5_B 359 KEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG--------GLQRPDIIRYLVSQGCI 430 (530)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH--------TTTCTHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc--------CCCcHHHHHHHHHCCCH
Confidence 9999999999998999999999999999999999988889999999999999852 223 667788899999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcC------------hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHH
Q 016639 315 RALVHSLHAGLSSPSLISASIALKAVAVN------------DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL 382 (385)
Q Consensus 315 ~~Lv~lL~~~~~~~v~~~a~~aL~~La~~------------~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~L 382 (385)
++|+.+|... ++.++..++++|.++... +++|..|.++||++.|..++. +.|..+++.+..+|
T Consensus 431 ~~L~~ll~~~-~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~----~~~~~v~~~a~~il 505 (530)
T 1wa5_B 431 KPLCDLLEIA-DNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQ----NENDKIYEKAYKII 505 (530)
T ss_dssp HHHHHHTTTC-CHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGG----CSCHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHc----CCCHHHHHHHHHHH
Confidence 9999999874 788999999999999753 347899999999999988653 45568999999998
Q ss_pred hc
Q 016639 383 SK 384 (385)
Q Consensus 383 r~ 384 (385)
.+
T Consensus 506 ~~ 507 (530)
T 1wa5_B 506 ET 507 (530)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 25
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=1.4e-20 Score=169.46 Aligned_cols=193 Identities=14% Similarity=0.191 Sum_probs=170.6
Q ss_pred HHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhc
Q 016639 126 RLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVH 205 (385)
Q Consensus 126 ~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~ 205 (385)
.|...+.+. +.+....+++.|..++.. +++++..+.+.|++|.|+.+|++ +++.++..|+++|++|+.
T Consensus 16 ~l~~LL~s~-------~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~l~~ 83 (210)
T 4db6_A 16 QMVQQLNSP-------DQQELQSALRKLSQIASG--GNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSNIAS 83 (210)
T ss_dssp HHHHHTTCS-------CHHHHHHHHHHHHHHHTS--CHHHHHHHHHTTHHHHHHHHTTC---SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCC-------CHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHhc
Confidence 456666554 788999999999999987 89999999999999999999987 488999999999999997
Q ss_pred CCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHH
Q 016639 206 DVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDA 284 (385)
Q Consensus 206 ~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~a 284 (385)
+++. +..+++.|+++.|+.+|++ ++..++..++|+|++++..++.+++.+++.|+++.|+.+|++.+..+++.|+++
T Consensus 84 ~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 84 GGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCCCHHHHHHHHcC--CcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 6544 5788999999999999986 478999999999999999999999999999999999999999888999999999
Q ss_pred HHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639 285 IRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV 342 (385)
Q Consensus 285 L~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~ 342 (385)
|.+|+..++ ++...+.+.|+++.|+.+|... ++.++..++++|.+|+.
T Consensus 162 L~~l~~~~~---------~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 162 LSNIASGGN---------EQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHTSCH---------HHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCc---------HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 999987533 3445678999999999999874 78899999999999975
No 26
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.86 E-value=1e-20 Score=192.53 Aligned_cols=247 Identities=14% Similarity=0.122 Sum_probs=193.2
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
.++..|...+... +.+....+++.|..+|.. +++++..+.+.|++|.|+.+|.+.. .+..++..|+++|+
T Consensus 266 ~~i~~L~~ll~~~-------~~~v~~~a~~~L~~L~~~--~~~~~~~~~~~~~v~~L~~ll~~~~-~~~~v~~~a~~~L~ 335 (529)
T 1jdh_A 266 GLLGTLVQLLGSD-------DINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAG-DREDITEPAICALR 335 (529)
T ss_dssp HHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTTT--CHHHHHHHHHTTHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCChHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 5677777777654 788899999999999997 7889999999999999999998641 23789999999999
Q ss_pred HHhcCCcc----chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHH
Q 016639 202 LLVHDVQS----TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDS 277 (385)
Q Consensus 202 ~L~~~~~~----~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v 277 (385)
+|+.+++. +..+++.||++.|+++|++. .+..++..++|+|++++.+ +.+++.+++.|+++.|+.+|+..+.++
T Consensus 336 nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~-~~~~v~~~a~~~l~nl~~~-~~~~~~~~~~~~i~~L~~ll~~~~~~v 413 (529)
T 1jdh_A 336 HLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDT 413 (529)
T ss_dssp HHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHcCCchHHHHHHHHHHcCChhHHHHHhccc-cchHHHHHHHHHHHHHhcC-hhhhHHHHHcCCHHHHHHHHHHHhHHH
Confidence 99876433 35788999999999999864 3468999999999999875 567789999999999999999877688
Q ss_pred HHHHHHHHHHhcCCCccch------------hhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChH
Q 016639 278 IQSLYDAIRVLLTPDDDQV------------VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE 345 (385)
Q Consensus 278 ~k~A~~aL~~Lt~~Dd~rv------------~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e 345 (385)
+++|+|++.|.+..+..+. ......++...|.+.|++++|+.+|... ++.++..++++|.+|+..++
T Consensus 414 ~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~-~~~v~~~a~~~l~~l~~~~~ 492 (529)
T 1jdh_A 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP-IENIQRVAAGVLCELAQDKE 492 (529)
T ss_dssp C-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCC-chHHHHHHHHHHHHHhcCHH
Confidence 8888888887322111110 0011234556788999999999999885 77899999999999998889
Q ss_pred HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 346 ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 346 ~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
++..|.+.||++.|.+++.+ +|.+|.+.|..+|.+|
T Consensus 493 ~~~~i~~~~~~~~L~~l~~~----~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 493 AAEAIEAEGATAPLTELLHS----RNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHTTCHHHHHHGGGC----SSHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHhcC----CCHHHHHHHHHHHHhc
Confidence 99999999999999998753 4568999999998764
No 27
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.85 E-value=3.6e-20 Score=195.43 Aligned_cols=313 Identities=14% Similarity=0.120 Sum_probs=225.2
Q ss_pred CCCCCccccccccccCCCcccCCCchhhhhhh--HHHHHHHHHhh-----HHhcCCChhHHHHHHHHHHHHcCCCCCCCc
Q 016639 34 AHPFVPKDHPFFVRTDLTAHEMGPPKTVRTIS--QEAFDEVVKEN-----MEDLGMEPTEALQDAIQTLSLQGVDLSGIV 106 (385)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is--qetfd~~v~en-----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~ 106 (385)
..|.||..+.+|+..+..........+-+.++ .+.-+.+++.+ +.-+.-...+.++.++ +-|+|++
T Consensus 180 ~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~-------~~L~nL~ 252 (644)
T 2z6h_A 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL-------WTLRNLS 252 (644)
T ss_dssp HTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHH-------HHHHHHG
T ss_pred HcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHH-------HHHHHHh
Confidence 46889999999976642111100000100011 11112333333 2233333445556666 3344554
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhccc
Q 016639 107 KCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR 186 (385)
Q Consensus 107 ~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~ 186 (385)
...+.. .. +..++..|...+... +.+....+++.|..+|.. ++.++..+.+.|+++.|+.+|.+..
T Consensus 253 ~~~~~~--~~---~~~~i~~Lv~lL~~~-------d~~v~~~a~~aL~~L~~~--~~~~~~~v~~~g~v~~Lv~lL~~~~ 318 (644)
T 2z6h_A 253 DAATKQ--EG---MEGLLGTLVQLLGSD-------DINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAG 318 (644)
T ss_dssp GGCTTC--CS---CHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred hcchhh--hh---hhhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcC--CHHHHHHHHHcCCHHHHHHHHHccC
Confidence 443321 11 225677788887654 778889999999999997 8899999999999999999998741
Q ss_pred CCcHhHHHHHHHHHHHHhcCCcc----chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 016639 187 CGSKRVLDSCLKTMALLVHDVQS----TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKI 262 (385)
Q Consensus 187 ~~d~~vl~~Al~aLa~L~~~~~~----~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~ 262 (385)
....++..|+++|++|+.+... +..+++.||++.|+++|++. ++..++..++|+|++++. ++.+++.+++.|+
T Consensus 319 -~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~-~~~~v~~~a~~~L~nLa~-~~~~~~~i~~~~~ 395 (644)
T 2z6h_A 319 -DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLAL-CPANHAPLREQGA 395 (644)
T ss_dssp -TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTT-CCHHHHHHHHHHHHHHTT-SGGGHHHHHHTTH
T ss_pred -CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCcc-CchHHHHHHHHHHHHHcc-CHHHHHHHHHcCC
Confidence 1268999999999999875332 23488899999999999864 457899999999999986 4667899999999
Q ss_pred hHHHHHHHccCChH----------------------HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHH
Q 016639 263 DELILEILSRQRND----------------------SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHS 320 (385)
Q Consensus 263 i~~Lv~lL~~~~~~----------------------v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~l 320 (385)
++.|+.+|.....+ ++..++.+|++|+.+. ++...+.+.|++++|+++
T Consensus 396 i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~----------~~~~~l~~~~~i~~Lv~l 465 (644)
T 2z6h_A 396 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDV----------HNRIVIRGLNTIPLFVQL 465 (644)
T ss_dssp HHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTTSH----------HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhcCH----------HHHHHHHhCCcHHHHHHH
Confidence 99999999875433 4445566666665432 344567799999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 321 LHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 321 L~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
|... ++.++..++++|.+|+..++++..|.+.||++.|++++.+ .|.++.+.|+.+|.+|
T Consensus 466 L~~~-~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~----~~~~vr~~A~~aL~~l 525 (644)
T 2z6h_A 466 LYSP-IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS----RNEGVATYAAAVLFRM 525 (644)
T ss_dssp TTCS-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence 9874 7779999999999999988999999999999999998754 4558988888888764
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.84 E-value=8.9e-20 Score=168.57 Aligned_cols=196 Identities=14% Similarity=0.172 Sum_probs=173.7
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~ 202 (385)
++..|...+... +.+....+++.|..++.. +++++..+.+.|++|.|+.+|++ +++.++..|+++|++
T Consensus 55 ~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~~~--~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~~ 122 (252)
T 4db8_A 55 ALPALVQLLSSP-------NEQILQEALWALSNIASG--GNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALSN 122 (252)
T ss_dssp HHHHHHHGGGCS-------CHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence 466677777654 678889999999999997 89999999999999999999998 478999999999999
Q ss_pred HhcCCccc-hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639 203 LVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (385)
Q Consensus 203 L~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A 281 (385)
|+.+.+.+ ..+.+.|+++.|+++|++ ++..++..++++|.+++..++.+++.+++.|+++.|+.+|.+.+..++..|
T Consensus 123 l~~~~~~~~~~~~~~~~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a 200 (252)
T 4db8_A 123 IASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 200 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHH
T ss_pred hhcCCchHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHH
Confidence 99887766 788999999999999986 478999999999999999899999999999999999999999888899999
Q ss_pred HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV 342 (385)
Q Consensus 282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~ 342 (385)
+++|.+|+..++ ++...+.+.|+++.|+.+|+.. ++.++..++++|.+|+.
T Consensus 201 ~~~L~~l~~~~~---------~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 201 LWALSNIASGGN---------EQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHHHHTTSCH---------HHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHTTC-
T ss_pred HHHHHHHhcCCH---------HHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHHHhc
Confidence 999999986443 3455678999999999999875 67799999999999974
No 29
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.84 E-value=3.9e-20 Score=172.59 Aligned_cols=195 Identities=13% Similarity=0.109 Sum_probs=161.6
Q ss_pred HHHHHHHhhcCCCCCCcccH--HHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 124 LERLKQLDLNSKDKFSDEDL--NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~--~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
++.|...+.+. +. +.+..+++.|+.+|.+ ++.+|..+.+.|+||+||++|++ +++.++..|+++|.
T Consensus 10 i~~lV~lL~s~-------~~~~~~q~~Aa~~l~~L~~~--~~~~r~~I~~~G~Ip~LV~lL~s---~~~~vq~~Aa~aL~ 77 (233)
T 3tt9_A 10 LERAVSMLEAD-------HMLPSRISAAATFIQHECFQ--KSEARKRVNQLRGILKLLQLLKV---QNEDVQRAVCGALR 77 (233)
T ss_dssp HHHHHHTCCSS-------CCCHHHHHHHHHHHHHHHHH--CHHHHHHHHHTTHHHHHHHGGGC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-------CchHHHHHHHHHHHHHHHcC--CcHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 66677777654 44 6778999999999987 89999999999999999999988 48899999999999
Q ss_pred HHhcCCc-cchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHc---cC----
Q 016639 202 LLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS---RQ---- 273 (385)
Q Consensus 202 ~L~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~---~~---- 273 (385)
+|+.+++ .+..|+++||||.|+++|++. .+.+++..++.+|++++ .++.+|..|++. ++++|+++|. ++
T Consensus 78 nLa~~~~~nk~~I~~~GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS-~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~ 154 (233)
T 3tt9_A 78 NLVFEDNDNKLEVAELNGVPRLLQVLKQT-RDLETKKQITGLLWNLS-SNDKLKNLMITE-ALLTLTENIIIPFSGWPEG 154 (233)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHH-TSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGG
T ss_pred HHHhCCHHHHHHHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHHH-cChhhHHHHHhc-cHHHHHHHHhccccCCccc
Confidence 9998644 468999999999999999852 46889999999999986 578899999974 6999998763 11
Q ss_pred ---------ChHHHHHHHHHHHHhcCCC-ccchhhhhchhHHHHHHhc-CcHHHHHHHHhcC----C-CHHHHHHHHHHH
Q 016639 274 ---------RNDSIQSLYDAIRVLLTPD-DDQVVASQVYGYARRFAKI-GIARALVHSLHAG----L-SSPSLISASIAL 337 (385)
Q Consensus 274 ---------~~~v~k~A~~aL~~Lt~~D-d~rv~~g~a~~~a~~I~e~-Ggi~~Lv~lL~~~----~-~~~v~~~a~~aL 337 (385)
..+++.+|.++|+||+..| +.| +.|.+. |+|++|+.+|+.. . +...++++..+|
T Consensus 155 ~~~~~~~~~~~~v~~na~~~L~nLss~~~~~R----------~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L 224 (233)
T 3tt9_A 155 DYPKANGLLDFDIFYNVTGCLRNMSSAGADGR----------KAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCIL 224 (233)
T ss_dssp GCCCCCTTCCHHHHHHHHHHHHHHTTSCHHHH----------HHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHhcCCHHHH----------HHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHH
Confidence 3389999999999999755 443 457765 6789999999873 2 446789999999
Q ss_pred HHhhcC
Q 016639 338 KAVAVN 343 (385)
Q Consensus 338 ~~La~~ 343 (385)
.||+.+
T Consensus 225 ~nLs~~ 230 (233)
T 3tt9_A 225 HNLSYQ 230 (233)
T ss_dssp HHHCCC
T ss_pred HHHHhh
Confidence 999876
No 30
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.84 E-value=5.7e-20 Score=198.70 Aligned_cols=313 Identities=13% Similarity=0.118 Sum_probs=227.7
Q ss_pred CCCCCccccccccccCCCcccCCCchhhhh--hhHHHHHHHHHhh-----HHhcCCChhHHHHHHHHHHHHcCCCCCCCc
Q 016639 34 AHPFVPKDHPFFVRTDLTAHEMGPPKTVRT--ISQEAFDEVVKEN-----MEDLGMEPTEALQDAIQTLSLQGVDLSGIV 106 (385)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--isqetfd~~v~en-----i~~f~m~~~eAl~~aI~qfe~QGvdLsni~ 106 (385)
..|.||..+.+|+..+....+.....+-+. .+.+.+..+++++ +..+.-...+.++.+.. -|.|++
T Consensus 316 ~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~-------~L~~L~ 388 (780)
T 2z6g_A 316 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW-------TLRNLS 388 (780)
T ss_dssp TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHH-------HHHHHH
T ss_pred HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHH-------HHHHHh
Confidence 457888888888765432211100011111 1233455666655 23333333455566653 333444
Q ss_pred cCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhccc
Q 016639 107 KCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR 186 (385)
Q Consensus 107 ~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~ 186 (385)
...+.. .. ...++..|...+... +.+....+++.|..++.. ++.++..+.+.|+++.|+.+|....
T Consensus 389 ~~~~~~--~~---~~~~i~~Lv~lL~~~-------d~~vr~~A~~aL~~L~~~--~~~~~~~i~~~g~i~~Lv~lL~~~~ 454 (780)
T 2z6g_A 389 DAATKQ--EG---MEGLLGTLVQLLGSD-------DINVVTCAAGILSNLTCN--NYKNKMMVCQVGGIEALVRTVLRAG 454 (780)
T ss_dssp TTCTTC--SC---CHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTSS--CHHHHHHHHTTTHHHHHHHHHHHHT
T ss_pred ccchhh--hh---hhhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHhC--CHHHHHHHHHCCCHHHHHHHHHccC
Confidence 333221 11 125677777777654 778889999999999997 7889999999999999999998641
Q ss_pred CCcHhHHHHHHHHHHHHhcCCcc----chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCC
Q 016639 187 CGSKRVLDSCLKTMALLVHDVQS----TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKI 262 (385)
Q Consensus 187 ~~d~~vl~~Al~aLa~L~~~~~~----~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~ 262 (385)
....++..|+++|++|+.+... +..+.+.++++.|+++|++. +...++..++|+|++++. ++.++..+.+.|+
T Consensus 455 -~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~-~~~~v~~~A~~aL~nLa~-~~~~~~~i~~~g~ 531 (780)
T 2z6g_A 455 -DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPP-SHWPLIKATVGLIRNLAL-CPANHAPLREQGA 531 (780)
T ss_dssp -TCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTT-CCHHHHHHHHHHHHHHHS-SHHHHHHHHHTTH
T ss_pred -CHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCC-ChHHHHHHHHHHHHHHhc-CHHHHHHHHHCCC
Confidence 1248999999999999875433 24778999999999999864 456899999999999986 5677889999999
Q ss_pred hHHHHHHHccCChH----------------------HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHH
Q 016639 263 DELILEILSRQRND----------------------SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHS 320 (385)
Q Consensus 263 i~~Lv~lL~~~~~~----------------------v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~l 320 (385)
++.|+.+|.+...+ ++..++.+|++|+.+. ++...|.+.|+|++|+.+
T Consensus 532 i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~----------~~~~~l~~~~~i~~Lv~l 601 (780)
T 2z6g_A 532 IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDI----------HNRIVIRGLNTIPLFVQL 601 (780)
T ss_dssp HHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSH----------HHHHHHHHTCCHHHHHHG
T ss_pred HHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcCh----------hhHHHHHHCCcHHHHHHH
Confidence 99999999775433 4445666666666432 344567799999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 321 LHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 321 L~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
|... ++.++..++.+|.+|+.+++++..|.+.||++.|++++.+ .|..+.+.|+.+|.+|
T Consensus 602 L~~~-~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~----~~~~Vr~~A~~aL~~l 661 (780)
T 2z6g_A 602 LYSP-IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS----RNEGVATYAAAVLFRM 661 (780)
T ss_dssp GGCS-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGC----SCHHHHHHHHHHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcC----CCHHHHHHHHHHHHHH
Confidence 9885 7889999999999999989999999999999999998764 4558989998888764
No 31
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.83 E-value=2e-19 Score=164.97 Aligned_cols=194 Identities=17% Similarity=0.272 Sum_probs=170.5
Q ss_pred CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCc-cchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 016639 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ-STETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE 251 (385)
Q Consensus 173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~-~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e 251 (385)
|++|.|+.+|++ ++..++..|+++|++++.+.+ .+..+++.|+++.|+++|++ ++.+++..++++|.+++..++
T Consensus 2 ~~i~~L~~~L~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~ 76 (252)
T 4hxt_A 2 NDVEKLVKLLTS---TDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTS--TDSEVQKEAARALANIASGPD 76 (252)
T ss_dssp CHHHHHHHHTTC---SCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCH
T ss_pred CcHHHHHHHHcC---CCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHcCCh
Confidence 689999999998 478899999999999998765 45788999999999999986 468999999999999998889
Q ss_pred hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 016639 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (385)
Q Consensus 252 ~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~ 331 (385)
+++..+++.|+++.|+.+|++.+.+++..|+++|.+|+..++ ++...+.+.|+++.|+.+|+.. ++.++.
T Consensus 77 ~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~L~~~l~~~-~~~~~~ 146 (252)
T 4hxt_A 77 EAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD---------EAIKAIVDAGGVEVLVKLLTST-DSEVQK 146 (252)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCH---------HHHHHHHHTTHHHHHHHHTTCS-CHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH---------HHHHHHHHCCCHHHHHHHHcCC-CHHHHH
Confidence 999999999999999999999888999999999999995333 3445688999999999999874 778999
Q ss_pred HHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 332 SASIALKAVAVND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 332 ~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
.++++|.+|+..+ +.+..+.+.|+++.|++++.+ .+..+...++.+|.+|
T Consensus 147 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~----~~~~v~~~a~~~L~~l 197 (252)
T 4hxt_A 147 EAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS----TDSEVQKEAARALANI 197 (252)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC----CCHHHHHHHHHHHHHH
Confidence 9999999999854 667899999999999999975 3348999999998864
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.82 E-value=2.5e-18 Score=171.09 Aligned_cols=237 Identities=11% Similarity=0.094 Sum_probs=200.5
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
.++..|...+.+. +.+....+++.|..++.. ++.++..+.+.|++|.|+.+++.. .+..+...|+++|+
T Consensus 107 ~~i~~L~~lL~~~-------~~~vr~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~~l~~~--~~~~v~~~a~~~L~ 175 (450)
T 2jdq_A 107 GAVPIFIELLSSE-------FEDVQEQAVWALGNIAGD--STMCRDYVLDCNILPPLLQLFSKQ--NRLTMTRNAVWALS 175 (450)
T ss_dssp THHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTCHHHHHHHTTSC--CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCC-------CHHHHHHHHHHHHHHccC--CHHHHHHHHHCCCHHHHHHHhcCC--CCHHHHHHHHHHHH
Confidence 3577777777654 778889999999999996 788999999999999999999852 47889999999999
Q ss_pred HHhcCC-ccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH
Q 016639 202 LLVHDV-QSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280 (385)
Q Consensus 202 ~L~~~~-~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~ 280 (385)
+|+.+. +......-.++++.|+++|++ ++.+++..++|+|.+++...++++..+++.|+++.|+.+|.+.+..++..
T Consensus 176 ~l~~~~~~~~~~~~~~~~l~~L~~~l~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~ 253 (450)
T 2jdq_A 176 NLCRGKSPPPEFAKVSPCLNVLSWLLFV--SDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSP 253 (450)
T ss_dssp HHHCCSSSCCCGGGTGGGHHHHHHHTTC--CCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHH
Confidence 999765 322222338899999999985 57899999999999999877888899999999999999999888789999
Q ss_pred HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc-ChHHHHHHHHcCcHHHH
Q 016639 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV-NDEICKSVAENGGIDAL 359 (385)
Q Consensus 281 A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~-~~e~c~~I~e~GGl~~L 359 (385)
|+++|.+|+..++. ....+.+.|+++.|+.+|+.. ++.++..++++|.+++. +++.++.+.+.|+++.|
T Consensus 254 a~~~L~~l~~~~~~---------~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 323 (450)
T 2jdq_A 254 ALRAVGNIVTGDDI---------QTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPAL 323 (450)
T ss_dssp HHHHHHHHTTSCHH---------HHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHhhCChH---------HHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 99999999976553 234567889999999999874 77899999999999996 45788889999999999
Q ss_pred HHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 360 LRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 360 v~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
++++.+. +..+.+.+|.+|.+|
T Consensus 324 ~~~l~~~----~~~v~~~a~~~L~~l 345 (450)
T 2jdq_A 324 ISILQTA----EFRTRKEAAWAITNA 345 (450)
T ss_dssp HHHHHHS----CHHHHHHHHHHHHHH
T ss_pred HHHHhcC----CHHHHHHHHHHHHHH
Confidence 9999862 347999999998764
No 33
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.82 E-value=4.5e-19 Score=180.34 Aligned_cols=237 Identities=15% Similarity=0.116 Sum_probs=200.5
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTM 200 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aL 200 (385)
.++..|...+... +.+....++..|..++.. .+++..+... |+++.|+.+|++. .+..++..|+++|
T Consensus 17 ~~i~~Lv~lL~~~-------~~~v~~~A~~~L~~l~~~---~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L 84 (529)
T 1jdh_A 17 RAIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTL 84 (529)
T ss_dssp CHHHHHHHHHTCS-------CHHHHHHHHHHHHHHHTS---HHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred hhHHHHHHHhCCC-------CHHHHHHHHHHHHHHHcC---CccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHH
Confidence 3577777777654 788899999999999984 5677666654 8999999999863 4788999999999
Q ss_pred HHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH
Q 016639 201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280 (385)
Q Consensus 201 a~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~ 280 (385)
.+|+.+.+.+..+.+.|+++.|+++|++ ++++++..++++|.+++..++.++..+++.|+++.|+.+|++.+..+...
T Consensus 85 ~~ls~~~~~~~~i~~~g~i~~L~~lL~~--~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~ 162 (529)
T 1jdh_A 85 HNLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 162 (529)
T ss_dssp HHHTTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHH
T ss_pred HHHHcCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 9998876667888999999999999986 46899999999999999988888999999999999999999988788888
Q ss_pred HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHH
Q 016639 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL 360 (385)
Q Consensus 281 A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv 360 (385)
++.+|++|+.+++ ++...+++.|+++.|+.+|+.+.+......++.+|.+|+..++++..+.+.|+++.|+
T Consensus 163 ~~~~L~~la~~~~---------~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~ 233 (529)
T 1jdh_A 163 TTDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 233 (529)
T ss_dssp HHHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHhCCH---------HHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHH
Confidence 9999999987433 3445688899999999999987566677888999999999999999999999999999
Q ss_pred HHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 361 RCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 361 ~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
.++.+. +..+.+.++.+|++|
T Consensus 234 ~ll~~~----~~~~~~~a~~~L~~l 254 (529)
T 1jdh_A 234 LHLTDP----SQRLVQNCLWTLRNL 254 (529)
T ss_dssp TTTTSS----CHHHHHHHHHHHHHH
T ss_pred HHHhCC----ChHHHHHHHHHHHHH
Confidence 988753 346777777777653
No 34
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.82 E-value=2.6e-19 Score=172.75 Aligned_cols=181 Identities=14% Similarity=0.182 Sum_probs=155.7
Q ss_pred cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHH-HHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHH
Q 016639 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVN-ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELIL 267 (385)
Q Consensus 189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~-lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv 267 (385)
+.+....|+..|..++.+.+...+|...||++.++. +|++ ++.+++..|+|+|++++..++.+++.+++.|++++|+
T Consensus 53 ~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s--~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll 130 (296)
T 1xqr_A 53 DQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEA--GAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 130 (296)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence 345567788999999887665678899999999999 9985 5789999999999999999999999999999999999
Q ss_pred HHHccC-ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-hH
Q 016639 268 EILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN-DE 345 (385)
Q Consensus 268 ~lL~~~-~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-~e 345 (385)
.+|++. +..++++|+|+|++|+.+... ....+.+.||+++|+.+|++. +..++..+|++|++|+.. ++
T Consensus 131 ~LL~~~~~~~v~~~A~~ALsnl~~~~~~---------~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~ 200 (296)
T 1xqr_A 131 RLLDRDACDTVRVKALFAISCLVREQEA---------GLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPE 200 (296)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHH---------HHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHccCCCHHHHHHHHHHHHHHHcCCcH---------HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChH
Confidence 999975 568999999999999865542 334577899999999999985 888999999999999875 68
Q ss_pred HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 346 ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 346 ~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
.++.+++.|+++.|+.+|.+. +. .+...++.+|.+|
T Consensus 201 ~~~~vv~~g~i~~Lv~LL~~~--d~--~v~~~al~aL~~l 236 (296)
T 1xqr_A 201 HKGTLCSMGMVQQLVALVRTE--HS--PFHEHVLGALCSL 236 (296)
T ss_dssp GHHHHHHTTHHHHHHHHHTSC--CS--THHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCC--Ch--hHHHHHHHHHHHH
Confidence 999999999999999999862 33 6888888888764
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.80 E-value=2.5e-18 Score=181.33 Aligned_cols=236 Identities=15% Similarity=0.115 Sum_probs=199.0
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
++..|...+... +......++..|..+|.. .+++..+... |+++.|+.+|++. .+..++..|+.+|.
T Consensus 15 ~i~~Lv~lL~~~-------~~~vr~~A~~~L~~La~~---~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~ 82 (644)
T 2z6h_A 15 AIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLH 82 (644)
T ss_dssp THHHHHHHHTCS-------CHHHHHHHHHHHHHHHTS---TTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC-------CHHHHHHHHHHHHHHHCC---ChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHH
Confidence 466677777644 788999999999999985 4567666654 8999999999863 47889999999999
Q ss_pred HHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (385)
Q Consensus 202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A 281 (385)
+|+...+.+..+.+.|+++.|+++|++ ++..++..++++|.+++..++.++..+++.|+++.|+.+|++.+..++..+
T Consensus 83 ~Ls~~~~~~~~i~~~g~i~~Lv~lL~~--~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a 160 (644)
T 2z6h_A 83 NLSHHREGLLAIFKSGGIPALVKMLGS--PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 160 (644)
T ss_dssp HHTTSHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHH
T ss_pred HHhcChhhHHHHHHcCCHHHHHHHHhC--CCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHH
Confidence 998876666888999999999999986 478999999999999999888899999999999999999999887777778
Q ss_pred HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHH
Q 016639 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR 361 (385)
Q Consensus 282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ 361 (385)
+.+|++|+..++ ++...+++.|+++.|+.+|+......++..++.+|.+|+...+++..+.+.|+++.|+.
T Consensus 161 ~~~L~~La~~~~---------~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ 231 (644)
T 2z6h_A 161 TDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGL 231 (644)
T ss_dssp HHHHHHHHTTCH---------HHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHT
T ss_pred HHHHHHHHhcCc---------HHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHH
Confidence 889999996332 34456888999999999999875567788999999999999999999999999999999
Q ss_pred HHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 362 CIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 362 ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
++.+. +..+.+.++.+|++|
T Consensus 232 ll~~~----~~~~~~~a~~~L~nL 251 (644)
T 2z6h_A 232 HLTDP----SQRLVQNCLWTLRNL 251 (644)
T ss_dssp TTTCS----CHHHHHHHHHHHHHH
T ss_pred HHhcC----CHHHHHHHHHHHHHH
Confidence 88752 346777777777654
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.76 E-value=2.1e-17 Score=178.56 Aligned_cols=237 Identities=16% Similarity=0.122 Sum_probs=199.1
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTM 200 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aL 200 (385)
.++..|...+... +......++..|..+|.. .+++..+.+. |+++.|+.+|+.. .+..+...|+++|
T Consensus 150 g~ip~Lv~lL~~~-------d~~vr~~A~~~L~~L~~~---~~~~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL 217 (780)
T 2z6g_A 150 RAIPELTKLLNDE-------DQVVVNKAAVMVHQLSKK---EASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTL 217 (780)
T ss_dssp HHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHTS---HHHHHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCC-------CHHHHHHHHHHHHHHhCC---ChhHHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHH
Confidence 4677777777654 778899999999999984 5667777654 8999999999864 4788999999999
Q ss_pred HHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH
Q 016639 201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280 (385)
Q Consensus 201 a~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~ 280 (385)
.+|+...+.+..+.+.|+++.|+++|++ ++..++..++++|.++|..++.++..+++.|+++.|+.+|++.+..+...
T Consensus 218 ~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~--~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~ 295 (780)
T 2z6g_A 218 HNLSHHREGLLAIFKSGGIPALVNMLGS--PVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 295 (780)
T ss_dssp HHHHTSHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHH
T ss_pred HHHhCCchhHHHHHHcCCHHHHHHHHcC--CCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHH
Confidence 9998775556788899999999999986 46899999999999999988889999999999999999999887788888
Q ss_pred HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHH
Q 016639 281 LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALL 360 (385)
Q Consensus 281 A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv 360 (385)
++.+|++|+..++ +....+++.|+++.|+.+|+..........++.+|.+|+...+++..+++.|+++.|+
T Consensus 296 a~~aL~~La~~~~---------e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll 366 (780)
T 2z6g_A 296 TTDCLQILAYGNQ---------ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 366 (780)
T ss_dssp HHHHHHHHHTTCH---------HHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHG
T ss_pred HHHHHHHHhcCCh---------HHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHH
Confidence 9999999986432 3344577889999999999986556677788999999999889999999999999999
Q ss_pred HHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 361 RCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 361 ~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
.++.+. +..+.+.++.+|++|
T Consensus 367 ~lL~~~----~~~~~~~a~~~L~~L 387 (780)
T 2z6g_A 367 LHLTDP----SQRLVQNCLWTLRNL 387 (780)
T ss_dssp GGTTCS----CHHHHHHHHHHHHHH
T ss_pred HHHcCC----chHHHHHHHHHHHHH
Confidence 988752 336777777777653
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.3e-16 Score=164.70 Aligned_cols=325 Identities=9% Similarity=0.023 Sum_probs=223.3
Q ss_pred CCCccccccccccCCCcccCCCchhhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHHHHcC-CC--------CCCCc
Q 016639 36 PFVPKDHPFFVRTDLTAHEMGPPKTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTLSLQG-VD--------LSGIV 106 (385)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qfe~QG-vd--------Lsni~ 106 (385)
-+.+.|+.||.+.+.... ..+..+..-=|+|.-|||-+-+= ..+++..|+-++..+ -+ |.|+.
T Consensus 334 ~La~~~~~~L~~~~~~~~----~~AvEgLaYLSl~~~VKe~L~~d----~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt 405 (778)
T 3opb_A 334 QLSEIFINAISRRIVPKV----EMSVEALAYLSLKASVKIMIRSN----ESFTEILLTMIKSQKMTHCLYGLLVIMANLS 405 (778)
T ss_dssp HHHHHHHHHTTTCCHHHH----HHHHHHHHHHTTSSHHHHHHHHC----HHHHHHHHHHHTTTCCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCccHH----HHHHHHHHHHhCCHHHHHHHHhC----HHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Confidence 467789999998654432 25666666777777777764432 334555554443211 01 22443
Q ss_pred cCCCCCCC---------------------CCC-------------chHH--HHHHHHHHHhhcCCCCCCcccHHHHHHHH
Q 016639 107 KCVPGESS---------------------LKD-------------NPLI--QSLERLKQLDLNSKDKFSDEDLNEMMGLF 150 (385)
Q Consensus 107 ~~~~~~~~---------------------~~~-------------~~v~--~al~~L~~~l~~~~~~~~~~~~~~~~~al 150 (385)
++.+.... ... ..+. .++..|...+.+. +......++
T Consensus 406 ~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-------s~~~re~A~ 478 (778)
T 3opb_A 406 TLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNL-------SPNCKQQVV 478 (778)
T ss_dssp CCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGS-------CHHHHHHHH
T ss_pred CCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCC-------CHHHHHHHH
Confidence 33221100 000 0000 2455555555443 677888999
Q ss_pred HHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh---CCCcHHHHHHHh
Q 016639 151 DKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT---GGGPKLLVNILI 227 (385)
Q Consensus 151 ~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~---~ggi~~Lv~lL~ 227 (385)
|.|..+|. ++++|..+++.||+++|+.+|.+...........|+++|++|+...++...|-. .|+|++|+++|.
T Consensus 479 ~aL~nLS~---d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~ 555 (778)
T 3opb_A 479 RIIYNITR---SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLP 555 (778)
T ss_dssp HHHHHHHT---SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSC
T ss_pred HHHHHHcC---CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcC
Confidence 99999986 699999999999999999999875321123678999999999854432122211 389999999998
Q ss_pred cCCCC-----------HHH-HHHHHHHHHHHhcCC----hhhHHHHHhC-CChHHHHHHHccCChHHHHHHHHHHHHhcC
Q 016639 228 DGNED-----------PEI-LNSGFAVVAASATGN----EVVKESYMEL-KIDELILEILSRQRNDSIQSLYDAIRVLLT 290 (385)
Q Consensus 228 ~~~~~-----------~~v-~~~a~~~L~~~~~~~----e~nr~~iv~~-G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~ 290 (385)
...+. ..+ ...|+.+|.|+++.+ |+.|+.|++. |+++.|.++|.+.+..++++||++|+||+.
T Consensus 556 ~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~ 635 (778)
T 3opb_A 556 RSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS 635 (778)
T ss_dssp CSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred CCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 32221 113 568999999999876 4568889986 999999999999888899999999999998
Q ss_pred CCccch-hhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh-cChHHHHHHHHc-CcHHHHHHHHHhcC
Q 016639 291 PDDDQV-VASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA-VNDEICKSVAEN-GGIDALLRCIDDSG 367 (385)
Q Consensus 291 ~Dd~rv-~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La-~~~e~c~~I~e~-GGl~~Lv~ll~~~~ 367 (385)
+.+.+. .|... ++- ...+.+++|+.++... |..++..++++|++++ ..+.+|+.|++. ||++.+++++++-
T Consensus 636 ~~e~i~~k~~~~-~~~---~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~- 709 (778)
T 3opb_A 636 HPLTIAAKFFNL-ENP---QSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQ- 709 (778)
T ss_dssp SGGGTGGGTSCC-SSH---HHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred CcHHHHHHHHhh-cCc---hhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhcc-
Confidence 766431 22110 000 0123589999999774 8889999999999996 567899999998 8999999999984
Q ss_pred CcCcHHHHHHHHHHHhcC
Q 016639 368 LQGNKTVARICCSLLSKV 385 (385)
Q Consensus 368 ~~~~~~v~k~a~~~Lr~l 385 (385)
+.+.++...++.+++||
T Consensus 710 -~~~~~l~~R~~~~l~NL 726 (778)
T 3opb_A 710 -IDDIELRQRLLMLFFGL 726 (778)
T ss_dssp -TTCHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHH
Confidence 24458999999998875
No 38
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.8e-15 Score=159.76 Aligned_cols=241 Identities=14% Similarity=0.071 Sum_probs=190.2
Q ss_pred hHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHH
Q 016639 119 PLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKN-GGVELVCSICYKMRCGSKRVLDSCL 197 (385)
Q Consensus 119 ~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al 197 (385)
.+....+.++.++... +.+.+..+++-|.++... ++-|..+++. |+++.|+.+++.. .+..+...++
T Consensus 331 si~~La~~~~~~L~~~-------~~~~~~~AvEgLaYLSl~---~~VKe~L~~d~~~L~~Lv~llk~~--~d~s~~Ygal 398 (778)
T 3opb_A 331 NLKQLSEIFINAISRR-------IVPKVEMSVEALAYLSLK---ASVKIMIRSNESFTEILLTMIKSQ--KMTHCLYGLL 398 (778)
T ss_dssp CHHHHHHHHHHHTTTC-------CHHHHHHHHHHHHHHTTS---SHHHHHHHHCHHHHHHHHHHHTTT--CCTTHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHhCC---HHHHHHHHhCHHHHHHHHHHHhCC--CCchHHHHHH
Confidence 3456777888887654 567799999999999884 6667766554 6699999999852 4677899999
Q ss_pred HHHHHHhcCCcc---------------------------------------chhHhhCCCcHHHHHHHhcCCCCHHHHHH
Q 016639 198 KTMALLVHDVQS---------------------------------------TETFRTGGGPKLLVNILIDGNEDPEILNS 238 (385)
Q Consensus 198 ~aLa~L~~~~~~---------------------------------------~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~ 238 (385)
..|+|++...+. +..+++.|+++.|+.++++ +++.++..
T Consensus 399 ~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S--~s~~~re~ 476 (778)
T 3opb_A 399 VIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHN--LSPNCKQQ 476 (778)
T ss_dssp HHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGG--SCHHHHHH
T ss_pred HHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcC--CCHHHHHH
Confidence 999999975442 1345688999999999987 47899999
Q ss_pred HHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChH---HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHH
Q 016639 239 GFAVVAASATGNEVVKESYMELKIDELILEILSRQRND---SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIAR 315 (385)
Q Consensus 239 a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~---v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~ 315 (385)
++|+|.+++ .+.++|..+++.|++++|+.+|.+++.. ...+|+++|.+|+...+....|++. .-.|+|+
T Consensus 477 A~~aL~nLS-~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~-------~~~~aI~ 548 (778)
T 3opb_A 477 VVRIIYNIT-RSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKY-------SALNAIP 548 (778)
T ss_dssp HHHHHHHHH-TSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSS-------CSTTHHH
T ss_pred HHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCC-------ccccchH
Confidence 999999997 6799999999999999999999998653 6788999999999766666555431 0138999
Q ss_pred HHHHHHhcCCC-H------------HHHHHHHHHHHHhhcCh-----HHHHHHHHc-CcHHHHHHHHHhcCCcCcHHHHH
Q 016639 316 ALVHSLHAGLS-S------------PSLISASIALKAVAVND-----EICKSVAEN-GGIDALLRCIDDSGLQGNKTVAR 376 (385)
Q Consensus 316 ~Lv~lL~~~~~-~------------~v~~~a~~aL~~La~~~-----e~c~~I~e~-GGl~~Lv~ll~~~~~~~~~~v~k 376 (385)
||+++|...+. . --..+++.||.|||..+ +.++.|++. |+++.|+++|.+ .|..+.+
T Consensus 549 pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s----~n~~Vrr 624 (778)
T 3opb_A 549 FLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD----ENVPLQR 624 (778)
T ss_dssp HHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC----SSHHHHH
T ss_pred HHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC----CCHHHHH
Confidence 99999983221 1 12568999999999875 568889985 999999999975 3448999
Q ss_pred HHHHHHhcC
Q 016639 377 ICCSLLSKV 385 (385)
Q Consensus 377 ~a~~~Lr~l 385 (385)
.||.+|.||
T Consensus 625 AA~elI~NL 633 (778)
T 3opb_A 625 STLELISNM 633 (778)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999875
No 39
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.22 E-value=8.3e-10 Score=115.28 Aligned_cols=216 Identities=11% Similarity=0.078 Sum_probs=171.3
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChh-hHHHHHHc-CcHHHHHHHHhcccCCcHhHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSV-NAAVATKN-GGVELVCSICYKMRCGSKRVLDSCLKTM 200 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~-~r~~~~~~-Gaip~Lv~lL~~~~~~d~~vl~~Al~aL 200 (385)
.+.-|...+.+. +......++..|+.+|.. .++ .+..+..+ +|++.||.+|.. ..+.+...++..|
T Consensus 123 ~i~~Ll~lL~~~-------df~vR~~alqlL~~L~~~--r~~~~Q~~Il~~p~gi~~Lv~lL~d---~rE~iRneallLL 190 (651)
T 3grl_A 123 NVTLLLSLLEEF-------DFHVRWPGVKLLTSLLKQ--LGPQVQQIILVSPMGVSRLMDLLAD---SREVIRNDGVLLL 190 (651)
T ss_dssp HHHHHHHHTTCC-------CHHHHHHHHHHHHHHHHH--SHHHHHHHHHHSTTHHHHHHGGGGC---SSHHHHHHHHHHH
T ss_pred cHHHHHHHhcCc-------cHHHHHHHHHHHHHHHhc--CcHHHHHHHHhCcccHHHHHHHHhC---chHHHHHHHHHHH
Confidence 345566666554 788888999999999997 666 77777755 999999999986 3677899999999
Q ss_pred HHHhcCCccchhHh-hCCCcHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh--
Q 016639 201 ALLVHDVQSTETFR-TGGGPKLLVNILIDGN--EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-- 275 (385)
Q Consensus 201 a~L~~~~~~~~~i~-~~ggi~~Lv~lL~~~~--~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-- 275 (385)
.+|+.++..-+.++ -.||.+.|+.+++... +...++..++.+|.++...|..|+..|.+.|+++.|..+|.....
T Consensus 191 ~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~ 270 (651)
T 3grl_A 191 QALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENS 270 (651)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSS
T ss_pred HHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcccc
Confidence 99999887655555 5599999999998632 245788999999999999999999999999999999999976533
Q ss_pred ----HHHHH---HHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhcCh-HH
Q 016639 276 ----DSIQS---LYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAVND-EI 346 (385)
Q Consensus 276 ----~v~k~---A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~~~-e~ 346 (385)
....+ +..+++-|...+.. .+.+..|++.+.++|++++|++++.... ...++..++.+++.+...| .+
T Consensus 271 ~W~~Qk~~N~~~~L~iIrlLv~~~~~---~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~ 347 (651)
T 3grl_A 271 GWSAQKVTNLHLMLQLVRVLVSPNNP---PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVN 347 (651)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCTTSC---HHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCCC---CCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 24455 66677777765431 2346678999999999999999998854 5678889999999988776 55
Q ss_pred HHHHHHc
Q 016639 347 CKSVAEN 353 (385)
Q Consensus 347 c~~I~e~ 353 (385)
...|.+.
T Consensus 348 Q~~fa~~ 354 (651)
T 3grl_A 348 QDYFASV 354 (651)
T ss_dssp HHHHHHC
T ss_pred HHHHhhc
Confidence 6667654
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.20 E-value=1.9e-09 Score=112.60 Aligned_cols=265 Identities=14% Similarity=0.136 Sum_probs=190.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCCh
Q 016639 84 PTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGS 163 (385)
Q Consensus 84 ~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~ 163 (385)
.-|=.++||..+.+= .|+.+. .....++..|...+..+ ..|.|.++.+|+.|..+....+++
T Consensus 35 l~eDRR~Av~~Lk~~-------sk~y~~------~Vg~~~l~~li~~L~~d-----~~D~e~v~~~LetL~~l~~~~~~~ 96 (651)
T 3grl_A 35 LLDDRRNAVRALKSL-------SKKYRL------EVGIQAMEHLIHVLQTD-----RSDSEIIGYALDTLYNIISNDEEE 96 (651)
T ss_dssp SHHHHHHHHHHHHHT-------TTTTTT------HHHHHTHHHHHHHHHSC-----TTCHHHHHHHHHHHHHHHCCC---
T ss_pred chhHHHHHHHHHHHH-------HHHhHH------HhhhhhHHHHHHHHhcc-----cccHHHHHHHHHHHHHHhCCCCcc
Confidence 445678888777653 233322 13336788888888764 237889999999997766541111
Q ss_pred h---------------hH-HHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--chhHhhC-CCcHHHHH
Q 016639 164 V---------------NA-AVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRTG-GGPKLLVN 224 (385)
Q Consensus 164 ~---------------~r-~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--~~~i~~~-ggi~~Lv~ 224 (385)
+ +. .++.+.+.|+.|+.+|.. .+-.+...+++.|..|+.+.+. ...|+++ +||+.|+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~---~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 97 EVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE---FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp -----------CHHHHHHHHHHHSTHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred cccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC---ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 0 11 234667899999999987 5889999999999999987765 3667755 99999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh----HHHHHHHHHHHHhcCCCccchhhhh
Q 016639 225 ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSIQSLYDAIRVLLTPDDDQVVASQ 300 (385)
Q Consensus 225 lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~----~v~k~A~~aL~~Lt~~Dd~rv~~g~ 300 (385)
+|.+ +...+...++.+|.+++.+|.+.+..++-+|+++.|+.+++.... .+++.+...|.+|...+-
T Consensus 174 lL~d--~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~------- 244 (651)
T 3grl_A 174 LLAD--SREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN------- 244 (651)
T ss_dssp GGGC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH-------
T ss_pred HHhC--chHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH-------
Confidence 9986 357788899999999998888776666678999999999987443 788889999999986432
Q ss_pred chhHHHHHHhcCcHHHHHHHHhcCCC-----HHHHHH---HHHHHHHhhcC-------hHHHHHHHHcCcHHHHHHHHHh
Q 016639 301 VYGYARRFAKIGIARALVHSLHAGLS-----SPSLIS---ASIALKAVAVN-------DEICKSVAENGGIDALLRCIDD 365 (385)
Q Consensus 301 a~~~a~~I~e~Ggi~~Lv~lL~~~~~-----~~v~~~---a~~aL~~La~~-------~e~c~~I~e~GGl~~Lv~ll~~ 365 (385)
.|+..|.|.|+++.|..+|..... .....+ +..++.-|... ..+...+.+.|++..|++++..
T Consensus 245 --sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~ 322 (651)
T 3grl_A 245 --SNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA 322 (651)
T ss_dssp --HHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred --HHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 467789999999999999975321 123344 34444555433 2466899999999999999876
Q ss_pred cCCcCcHHHHHHHHHHH
Q 016639 366 SGLQGNKTVARICCSLL 382 (385)
Q Consensus 366 ~~~~~~~~v~k~a~~~L 382 (385)
..-.. .+..+++.++
T Consensus 323 ~~~p~--~i~~~Al~tl 337 (651)
T 3grl_A 323 TGVPA--DILTETINTV 337 (651)
T ss_dssp SSCCH--HHHHHHHHHH
T ss_pred CCCCH--HHHHHHHHHH
Confidence 32222 5555554443
No 41
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.83 E-value=1e-08 Score=109.24 Aligned_cols=197 Identities=12% Similarity=0.104 Sum_probs=143.1
Q ss_pred HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHH-HHhcCCCCHHHHHHHHHHHHHHhc
Q 016639 170 TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVN-ILIDGNEDPEILNSGFAVVAASAT 248 (385)
Q Consensus 170 ~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~-lL~~~~~~~~v~~~a~~~L~~~~~ 248 (385)
.+...+.+|++.|++ .++.....|+++|++|+.+...++.+...+++..++. +|.+ ++.+|...|+++|+++|.
T Consensus 31 ~~~~~i~Pll~~L~S---~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D--~~~~Vr~~A~gaLrnL~~ 105 (684)
T 4gmo_A 31 LREDKILPVLKDLKS---PDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTD--NNIDSRAAGWEILKVLAQ 105 (684)
T ss_dssp HHHHTTHHHHHHHSS---SCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTC--SCHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHcCC---CCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCC--CCHHHHHHHHHHHHHHHh
Confidence 334467778888887 4788899999999999986555678889999987765 5554 578999999999999986
Q ss_pred C-ChhhHHHHHhCCChHHHHHHHccCCh---------------------HHHHHHHHHHHHhcCCCccchhhhhchhHHH
Q 016639 249 G-NEVVKESYMELKIDELILEILSRQRN---------------------DSIQSLYDAIRVLLTPDDDQVVASQVYGYAR 306 (385)
Q Consensus 249 ~-~e~nr~~iv~~G~i~~Lv~lL~~~~~---------------------~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~ 306 (385)
. ..+.+..+++.|++++|..+|++... ++..+++.+|.+|+...+ +...
T Consensus 106 ~~g~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~---------~~~~ 176 (684)
T 4gmo_A 106 EEEADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARD---------EIHE 176 (684)
T ss_dssp HSCHHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCH---------HHHH
T ss_pred hcCchHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCH---------HHHH
Confidence 4 34677888899999999999865211 344568888999874332 2233
Q ss_pred HHHhcCcHHHHHHHHhcCC--CHHHHHHHHHHHHHhhcCh-HHHHHHHHcCcHHHHHHH--HHhcCCcCcHHHHHHHHHH
Q 016639 307 RFAKIGIARALVHSLHAGL--SSPSLISASIALKAVAVND-EICKSVAENGGIDALLRC--IDDSGLQGNKTVARICCSL 381 (385)
Q Consensus 307 ~I~e~Ggi~~Lv~lL~~~~--~~~v~~~a~~aL~~La~~~-e~c~~I~e~GGl~~Lv~l--l~~~~~~~~~~v~k~a~~~ 381 (385)
.+.+.|+++.|+.+|.... ..++...++..|..++..+ ++.+.|.+.|....+.-+ +.++.+. ....+|.+
T Consensus 177 ~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~~----~~~la~gi 252 (684)
T 4gmo_A 177 AVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTDP----RAVMACGV 252 (684)
T ss_dssp HHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSCT----THHHHHHH
T ss_pred HHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCcH----HHHHHHHH
Confidence 5677899999999986543 4578889999999998875 788899888765433222 2333222 23456666
Q ss_pred Hhc
Q 016639 382 LSK 384 (385)
Q Consensus 382 Lr~ 384 (385)
|+|
T Consensus 253 L~N 255 (684)
T 4gmo_A 253 LHN 255 (684)
T ss_dssp HHH
T ss_pred HHh
Confidence 665
No 42
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.58 E-value=3.7e-06 Score=75.00 Aligned_cols=182 Identities=13% Similarity=0.031 Sum_probs=138.0
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~ 202 (385)
+++.|...+.+. +......+++.|..... .++++.|+.+|.+ .+..+...|+++|+.
T Consensus 20 ~~~~L~~~L~~~-------~~~vR~~A~~~L~~~~~-------------~~~~~~L~~~l~~---~~~~vr~~a~~aL~~ 76 (211)
T 3ltm_A 20 KVEMYIKNLQDD-------SYYVRRAAAYALGKIGD-------------ERAVEPLIKALKD---EDAWVRRAAADALGQ 76 (211)
T ss_dssp GHHHHHHHTTCS-------SHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTC---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-------CHHHHHHHHHHHHHhCC-------------ccHHHHHHHHHcC---CCHHHHHHHHHHHHh
Confidence 466677777654 67777788888877632 2579999999986 488899999999998
Q ss_pred HhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHH
Q 016639 203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLY 282 (385)
Q Consensus 203 L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~ 282 (385)
+.. .++++.|+++|.+ ++..+...++++|..+. + ...++.|+.+|.+.+..++..|+
T Consensus 77 ~~~----------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~ 133 (211)
T 3ltm_A 77 IGD----------ERAVEPLIKALKD--EDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDEDWFVRIAAA 133 (211)
T ss_dssp HCC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred hCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCCCHHHHHHHH
Confidence 642 2467889999875 57889999999998763 2 24788999999888878999999
Q ss_pred HHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHH
Q 016639 283 DAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRC 362 (385)
Q Consensus 283 ~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~l 362 (385)
++|..+.. ...++.|+.+|... ++.+...++.+|..+.. ...++.|.++
T Consensus 134 ~aL~~~~~--------------------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~ 182 (211)
T 3ltm_A 134 FALGEIGD--------------------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG----------ERVRAAMEKL 182 (211)
T ss_dssp HHHHHHCC--------------------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS----------HHHHHHHHHH
T ss_pred HHHHHcCC--------------------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------hhHHHHHHHH
Confidence 99988742 23578899998663 77899999999998853 2356677787
Q ss_pred HHhcCCcCcHHHHHHHHHHHhcC
Q 016639 363 IDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 363 l~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
+.+ .+..|-+.+..+|.++
T Consensus 183 l~d----~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 183 AET----GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHH----CCHHHHHHHHHHHHC-
T ss_pred HhC----CCHHHHHHHHHHHHhc
Confidence 775 3347888888888764
No 43
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.51 E-value=2.8e-07 Score=98.05 Aligned_cols=182 Identities=10% Similarity=0.014 Sum_probs=133.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHH-HHhcccCCcHhHHHHHHHHHHHHhcC--CccchhHhhCCC
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCS-ICYKMRCGSKRVLDSCLKTMALLVHD--VQSTETFRTGGG 218 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~-lL~~~~~~d~~vl~~Al~aLa~L~~~--~~~~~~i~~~gg 218 (385)
+.+....|+++|+++|. ++..|..+.+.|+++.++. +|.. .+..+...|.++|.||+.+ .+.+..++..|+
T Consensus 47 ~~~~r~~A~~al~~l~~---~~~~~~l~~~~~~v~~ll~~lL~D---~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~i 120 (684)
T 4gmo_A 47 DAKSRTTAAGAIANIVQ---DAKCRKLLLREQVVHIVLTETLTD---NNIDSRAAGWEILKVLAQEEEADFCVHLYRLDV 120 (684)
T ss_dssp CCSHHHHHHHHHHHHTT---SHHHHHHHHHTTHHHHHHHTTTTC---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTH
T ss_pred CHHHHHHHHHHHHHHHc---CcHHHHHHHHcCCHHHHHHHHcCC---CCHHHHHHHHHHHHHHHhhcCchHHHHHHHcCh
Confidence 67788999999999996 7999999999999988776 4554 5789999999999999854 334567788999
Q ss_pred cHHHHHHHhcCCC------------C-------HHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC---hH
Q 016639 219 PKLLVNILIDGNE------------D-------PEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR---ND 276 (385)
Q Consensus 219 i~~Lv~lL~~~~~------------~-------~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~---~~ 276 (385)
++.|..+|+.... . .++....+.+|+++|..+++....|.+.|+++.|+..|.+.. .+
T Consensus 121 l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~ 200 (684)
T 4gmo_A 121 LTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQD 200 (684)
T ss_dssp HHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHH
T ss_pred HHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHH
Confidence 9999999864210 0 124456778888889888888889999999999999985532 37
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcH---HHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639 277 SIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIA---RALVHSLHAGLSSPSLISASIALKAV 340 (385)
Q Consensus 277 v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi---~~Lv~lL~~~~~~~v~~~a~~aL~~L 340 (385)
++..|+.+|..|+.+.+ +....+.+.|.. ..+..+ ..+.+. ....+|+.|.++
T Consensus 201 v~~~a~~~L~~ls~dn~---------~~~~~i~~~~~~~~~~~ll~~-~~~~~~-~~~la~giL~Ni 256 (684)
T 4gmo_A 201 IYEEAISCLTTLSEDNL---------KVGQAITDDQETHVYDVLLKL-ATGTDP-RAVMACGVLHNV 256 (684)
T ss_dssp HHHHHHHHHHHHHTTCH---------HHHHHHHTCCSSCHHHHHHHH-HHSSCT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCH---------HHHHHHHhcchHHHHHHHHHH-hcCCcH-HHHHHHHHHHhH
Confidence 88899999999987554 223345555532 233332 232222 234567777776
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.46 E-value=1.6e-05 Score=70.25 Aligned_cols=183 Identities=13% Similarity=0.046 Sum_probs=138.8
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
.....+...+.+. +......+++.|..... .++++.|+.+|.. .+..+...|+++|+
T Consensus 14 ~~~~~~i~~L~~~-------~~~vr~~A~~~L~~~~~-------------~~~~~~L~~~l~~---~~~~vr~~a~~~L~ 70 (201)
T 3ltj_A 14 EKVEMYIKNLQDD-------SYYVRRAAAYALGKIGD-------------ERAVEPLIKALKD---EDAWVRRAAADALG 70 (201)
T ss_dssp HHHHHHHHHTTCS-------CHHHHHHHHHHHHHHCC-------------GGGHHHHHHHTTC---SSHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCC-------CHHHHHHHHHHHHhcCC-------------hhHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 3456677777654 77888888888887632 2478999999976 58889999999999
Q ss_pred HHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (385)
Q Consensus 202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A 281 (385)
.+.. ..+++.|+.+|.+ ++..+...++++|..+. ++ ..++.|+.+|.+.+..++..|
T Consensus 71 ~~~~----------~~~~~~L~~~l~d--~~~~vr~~a~~aL~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a 127 (201)
T 3ltj_A 71 QIGD----------ERAVEPLIKALKD--EDGWVRQSAAVALGQIG--DE---------RAVEPLIKALKDEDWFVRIAA 127 (201)
T ss_dssp HHCC----------GGGHHHHHHHTTC--SSHHHHHHHHHHHHHHC--CG---------GGHHHHHHHTTCSSHHHHHHH
T ss_pred hhCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC--cH---------HHHHHHHHHHcCCCHHHHHHH
Confidence 8632 2467889999975 57889999999998753 22 478889999988877889999
Q ss_pred HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHH
Q 016639 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLR 361 (385)
Q Consensus 282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ 361 (385)
+++|..+.. ...++.|+.+|... ++.+...++.+|..+.. ..+++.|.+
T Consensus 128 ~~aL~~~~~--------------------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~----------~~~~~~L~~ 176 (201)
T 3ltj_A 128 AFALGEIGD--------------------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG----------ERVRAAMEK 176 (201)
T ss_dssp HHHHHHHTC--------------------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS----------HHHHHHHHH
T ss_pred HHHHHHhCC--------------------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------hhHHHHHHH
Confidence 999987742 24578999999763 77899999999998842 135677778
Q ss_pred HHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 362 CIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 362 ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
++.+ .+..|-..+..+|.+|
T Consensus 177 ~l~d----~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 177 LAET----GTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHH----CCHHHHHHHHHHHHHC
T ss_pred HHhC----CCHHHHHHHHHHHHHH
Confidence 8866 2347888888887764
No 45
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.46 E-value=1.1e-05 Score=75.22 Aligned_cols=130 Identities=15% Similarity=0.029 Sum_probs=85.2
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~ 202 (385)
+++.|...+.+. +......+++.|..... + ++++.|+.+|.. .++.+...|+++|+.
T Consensus 24 ~i~~L~~~L~~~-------~~~vr~~A~~~L~~~~~----~---------~~~~~L~~~l~d---~~~~vR~~A~~aL~~ 80 (280)
T 1oyz_A 24 NDDELFRLLDDH-------NSLKRISSARVLQLRGG----Q---------DAVRLAIEFCSD---KNYIRRDIGAFILGQ 80 (280)
T ss_dssp CHHHHHHHTTCS-------SHHHHHHHHHHHHHHCC----H---------HHHHHHHHHHTC---SSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHcC-------CHHHHHHHHHHHHccCC----c---------hHHHHHHHHHcC---CCHHHHHHHHHHHHH
Confidence 356677776543 66777788888877732 2 368899999986 478889999999988
Q ss_pred HhcCCccchhHhhCCCcHHHHHHHh---cCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHH
Q 016639 203 LVHDVQSTETFRTGGGPKLLVNILI---DGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ 279 (385)
Q Consensus 203 L~~~~~~~~~i~~~ggi~~Lv~lL~---~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k 279 (385)
+..... .++.++.+|. ...++..+...++++|..++..+..... .+++.|+.+|.+.+..++.
T Consensus 81 l~~~~~---------~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~ 146 (280)
T 1oyz_A 81 IKICKK---------CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRR 146 (280)
T ss_dssp SCCCTT---------THHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHH
T ss_pred hccccc---------cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHH
Confidence 643221 1233334332 1235788999999999987644332211 3466777777776667777
Q ss_pred HHHHHHHHhc
Q 016639 280 SLYDAIRVLL 289 (385)
Q Consensus 280 ~A~~aL~~Lt 289 (385)
.|+++|..+.
T Consensus 147 ~a~~aL~~~~ 156 (280)
T 1oyz_A 147 ATAFAISVIN 156 (280)
T ss_dssp HHHHHHHTC-
T ss_pred HHHHHHHhcC
Confidence 7777777653
No 46
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.31 E-value=6.8e-05 Score=69.67 Aligned_cols=208 Identities=9% Similarity=-0.042 Sum_probs=119.7
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhc--ccCCcHhHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYK--MRCGSKRVLDSCLKT 199 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~--~~~~d~~vl~~Al~a 199 (385)
.++..|...+.+. +......+++.|..+... +. .++.++.+|.. ..+.+..+...|+++
T Consensus 54 ~~~~~L~~~l~d~-------~~~vR~~A~~aL~~l~~~---~~---------~~~~l~~~L~~~~~~d~~~~vr~~a~~a 114 (280)
T 1oyz_A 54 DAVRLAIEFCSDK-------NYIRRDIGAFILGQIKIC---KK---------CEDNVFNILNNMALNDKSACVRATAIES 114 (280)
T ss_dssp HHHHHHHHHHTCS-------SHHHHHHHHHHHHHSCCC---TT---------THHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHcCC-------CHHHHHHHHHHHHHhccc---cc---------cchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3456667776654 667777888888777532 11 23334333321 112578899999999
Q ss_pred HHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHH
Q 016639 200 MALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQ 279 (385)
Q Consensus 200 La~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k 279 (385)
|+.+..+... .....++.|+.+|.+ ++..+...++++|..+. + ..+++.|+.+|.+.+..+..
T Consensus 115 L~~l~~~~~~----~~~~~~~~L~~~l~d--~~~~vR~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~ 177 (280)
T 1oyz_A 115 TAQRCKKNPI----YSPKIVEQSQITAFD--KSTNVRRATAFAISVIN--D---------KATIPLLINLLKDPNGDVRN 177 (280)
T ss_dssp HHHHHHHCGG----GHHHHHHHHHHHTTC--SCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHH
T ss_pred HHHHhccCCc----ccHHHHHHHHHHhhC--CCHHHHHHHHHHHHhcC--C---------HHHHHHHHHHHcCCCHHHHH
Confidence 9998643211 122346777777764 57788888888887542 2 24788889988887777888
Q ss_pred HHHHHHHHhcCCCc--------------cchhhhhchhHHHHHH---hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639 280 SLYDAIRVLLTPDD--------------DQVVASQVYGYARRFA---KIGIARALVHSLHAGLSSPSLISASIALKAVAV 342 (385)
Q Consensus 280 ~A~~aL~~Lt~~Dd--------------~rv~~g~a~~~a~~I~---e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~ 342 (385)
.|+++|..+..++. ..+. ..-+..+. ....++.|+.+|+.. + +...+..+|..+..
T Consensus 178 ~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR----~~A~~aL~~~~~~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~ 250 (280)
T 1oyz_A 178 WAAFAININKYDNSDIRDCFVEMLQDKNEEVR----IEAIIGLSYRKDKRVLSVLCDELKKN-T--VYDDIIEAAGELGD 250 (280)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHH----HHHHHHHHHTTCGGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC
T ss_pred HHHHHHHhhccCcHHHHHHHHHHhcCCCHHHH----HHHHHHHHHhCCHhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc
Confidence 88888887742111 0000 00011111 122445555555331 1 33344444444432
Q ss_pred ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 343 NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 343 ~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
...++.|.+++.++. +.++.+.+...|+++
T Consensus 251 ----------~~~~~~L~~~l~~~~---~~~~~~~~~~~l~~~ 280 (280)
T 1oyz_A 251 ----------KTLLPVLDTMLYKFD---DNEIITSAIDKLKRS 280 (280)
T ss_dssp ----------GGGHHHHHHHHTTSS---CCHHHHHHHHHHTCC
T ss_pred ----------hhhhHHHHHHHhcCC---CcHHHHHHHHHhhcC
Confidence 246788888887643 236888888887763
No 47
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.12 E-value=4.9e-05 Score=67.59 Aligned_cols=152 Identities=16% Similarity=0.130 Sum_probs=117.6
Q ss_pred cCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 016639 172 NGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE 251 (385)
Q Consensus 172 ~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e 251 (385)
.+.++.|+.+|++ .+..+...|+.+|+.+-. ..+++.|+++|.+ ++..+...++++|..+. +
T Consensus 18 ~~~~~~L~~~L~~---~~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~--~~~~vr~~a~~aL~~~~--~- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQD---DSYYVRRAAAYALGKIGD----------ERAVEPLIKALKD--EDAWVRRAAADALGQIG--D- 79 (211)
T ss_dssp GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SCHHHHHHHHHHHHHHC--C-
T ss_pred HhHHHHHHHHHcC---CCHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcC--CCHHHHHHHHHHHHhhC--C-
Confidence 3579999999986 588999999999997632 2567999999985 57899999999998753 2
Q ss_pred hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 016639 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (385)
Q Consensus 252 ~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~ 331 (385)
.+.++.|+.+|.+.+..++..|+++|..+.. .+.++.|+.+|.. .++.+..
T Consensus 80 --------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~d-~~~~vr~ 130 (211)
T 3ltm_A 80 --------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------------------ERAVEPLIKALKD-EDWFVRI 130 (211)
T ss_dssp --------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTC-SSHHHHH
T ss_pred --------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHhC-CCHHHHH
Confidence 3578899999988887888889999987742 2357899999866 3788999
Q ss_pred HHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 332 SASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 332 ~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
.++.+|..+.. ...++.|.+++.+ .+..|-..++.+|.+
T Consensus 131 ~a~~aL~~~~~----------~~~~~~L~~~l~d----~~~~vr~~a~~aL~~ 169 (211)
T 3ltm_A 131 AAAFALGEIGD----------ERAVEPLIKALKD----EDGWVRQSAADALGE 169 (211)
T ss_dssp HHHHHHHHHCC----------GGGHHHHHHHTTC----SSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC----------HHHHHHHHHHHcC----CCHHHHHHHHHHHHH
Confidence 99999998853 2467777777754 334677777777754
No 48
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.07 E-value=0.00015 Score=63.80 Aligned_cols=178 Identities=16% Similarity=0.056 Sum_probs=129.3
Q ss_pred HHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHH
Q 016639 77 MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIEL 156 (385)
Q Consensus 77 i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~l 156 (385)
|+.+.-+-.+....|+..+...|- . .+++.|...+... +......+++.|...
T Consensus 20 i~~L~~~~~~vr~~A~~~L~~~~~-----------------~---~~~~~L~~~l~~~-------~~~vr~~a~~~L~~~ 72 (201)
T 3ltj_A 20 IKNLQDDSYYVRRAAAYALGKIGD-----------------E---RAVEPLIKALKDE-------DAWVRRAAADALGQI 72 (201)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHCC-----------------G---GGHHHHHHHTTCS-------SHHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHhcCC-----------------h---hHHHHHHHHHcCC-------CHHHHHHHHHHHHhh
Confidence 334544555566777766654441 0 2245566666543 667777888888776
Q ss_pred hcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHH
Q 016639 157 CGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEIL 236 (385)
Q Consensus 157 c~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~ 236 (385)
.. + ++++.|+.+|.. .++.+...|+++|+.+.. ...++.|+.+|.+ ++..+.
T Consensus 73 ~~----~---------~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d--~~~~vr 124 (201)
T 3ltj_A 73 GD----E---------RAVEPLIKALKD---EDGWVRQSAAVALGQIGD----------ERAVEPLIKALKD--EDWFVR 124 (201)
T ss_dssp CC----G---------GGHHHHHHHTTC---SSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTC--SSHHHH
T ss_pred CC----H---------HHHHHHHHHHcC---CCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcC--CCHHHH
Confidence 32 2 478999999986 588999999999998632 2367889999864 578899
Q ss_pred HHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHH
Q 016639 237 NSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARA 316 (385)
Q Consensus 237 ~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~ 316 (385)
..++++|..+. . ...++.|+.+|.+.+..++..|+++|..+.. ..+++.
T Consensus 125 ~~a~~aL~~~~--~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------------------~~~~~~ 173 (201)
T 3ltj_A 125 IAAAFALGEIG--D---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--------------------ERVRAA 173 (201)
T ss_dssp HHHHHHHHHHT--C---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------------------HHHHHH
T ss_pred HHHHHHHHHhC--C---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------hhHHHH
Confidence 99999998763 2 3578899999988877899999999998831 124678
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 317 LVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 317 Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
|..+|... ++.+...+..+|.++.
T Consensus 174 L~~~l~d~-~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 174 MEKLAETG-TGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHC-CHHHHHHHHHHHHHCC
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 88888774 7788889999988764
No 49
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.93 E-value=9.1e-05 Score=79.89 Aligned_cols=336 Identities=14% Similarity=0.072 Sum_probs=180.2
Q ss_pred cCChhhhhHHhhhhhccCCCCCCCCCCccccccccc--cCCCcccCCCc----h-hh---hhhhHHHHHHHHHhhHHhcC
Q 016639 12 FSNSEQIDFQKQSSLITLPQPRAHPFVPKDHPFFVR--TDLTAHEMGPP----K-TV---RTISQEAFDEVVKENMEDLG 81 (385)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~-~~---~~isqetfd~~v~eni~~f~ 81 (385)
+|++.+.+-++++.|-...+-| ++.+.....+.. +.......-++ + .. +.++.+. .+.||+++-..=
T Consensus 23 ~s~d~~~r~~Ae~~L~~~~~~p--~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~-~~~ik~~ll~~l 99 (852)
T 4fdd_A 23 QSPDTTIQRTVQQKLEQLNQYP--DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGV-TDFIKSECLNNI 99 (852)
T ss_dssp TCSCHHHHHHHHHHHHHHTTSH--HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHH-HHHHHHHHHTTT
T ss_pred hCcCHHHHHHHHHHHHHHHhCC--CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCCCCHHH-HHHHHHHHHHHH
Confidence 4667777777777766554422 333333333332 11111111111 0 00 1244554 456666654433
Q ss_pred CChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCC
Q 016639 82 MEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNE 161 (385)
Q Consensus 82 m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~ 161 (385)
-+++..++..+.+. ++.|.+..+..... +.+..|...+.+. +......++..|..+|+.
T Consensus 100 ~~~~~~vr~~~a~~------i~~ia~~~~~~~wp------~ll~~L~~~l~~~-------~~~~r~~al~~L~~i~~~-- 158 (852)
T 4fdd_A 100 GDSSPLIRATVGIL------ITTIASKGELQNWP------DLLPKLCSLLDSE-------DYNTCEGAFGALQKICED-- 158 (852)
T ss_dssp TCSSHHHHHHHHHH------HHHHHHHTTTTTCT------THHHHHHHHHSCS-------SHHHHHHHHHHHHHHHHH--
T ss_pred cCCCHHHHHHHHHH------HHHHHHhcCccccH------HHHHHHHHHHcCC-------CHHHHHHHHHHHHHHHHH--
Confidence 35555555544332 11121111111111 3455666666543 566777889999999874
Q ss_pred ChhhHHHHH----HcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh--CCCcHHHHHHHhcCCCCHHH
Q 016639 162 GSVNAAVAT----KNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEI 235 (385)
Q Consensus 162 ~~~~r~~~~----~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v 235 (385)
.+..-..-. -...+|.|+.++++ .+..+...|+++|+.++.... +.+.. ...++.++.++.+ ++.++
T Consensus 159 ~~~~~~~~~~~~~~~~il~~l~~~l~~---~~~~vR~~A~~aL~~~~~~~~--~~~~~~~~~~l~~l~~~~~d--~~~~v 231 (852)
T 4fdd_A 159 SAEILDSDVLDRPLNIMIPKFLQFFKH---SSPKIRSHAVACVNQFIISRT--QALMLHIDSFIENLFALAGD--EEPEV 231 (852)
T ss_dssp HTTHHHHCSSSSCHHHHHHHHTTTTTC---SSHHHHHHHHHHHHTTTTTTC--HHHHTSHHHHHHHHHHHHTC--CCHHH
T ss_pred hHHHhchhhhcchHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHcCC--CCHHH
Confidence 222110000 12346666666664 578899999999998876532 22211 1345666676654 57899
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCC------------------------
Q 016639 236 LNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP------------------------ 291 (385)
Q Consensus 236 ~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~------------------------ 291 (385)
...+++++..++......-...++ ++++.++.++++.+..++..|+.++..++..
T Consensus 232 r~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~ 310 (852)
T 4fdd_A 232 RKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKY 310 (852)
T ss_dssp HHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999999988655543222222 4778888888887778888899888777531
Q ss_pred ----------C---c-----------cchhhhhchhHHHHHHhcC----cHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639 292 ----------D---D-----------DQVVASQVYGYARRFAKIG----IARALVHSLHAGLSSPSLISASIALKAVAVN 343 (385)
Q Consensus 292 ----------D---d-----------~rv~~g~a~~~a~~I~e~G----gi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~ 343 (385)
| | .|.....+.+......... .++.+.+.|.+ .+..++..++++|.+++..
T Consensus 311 ~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~-~~~~~R~aa~~alg~i~~~ 389 (852)
T 4fdd_A 311 SDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFH-HEWVVKESGILVLGAIAEG 389 (852)
T ss_dssp CHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTC-SSHHHHHHHHHHHHHTTTT
T ss_pred cHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhc
Confidence 1 0 0111111111111111112 33444444544 3667888999999999865
Q ss_pred hHH-HHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 344 DEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 344 ~e~-c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
..- ..... .+.++.++.++. +.+..|.+.++.+|.++
T Consensus 390 ~~~~~~~~l-~~~l~~l~~~l~----d~~~~Vr~~a~~~l~~l 427 (852)
T 4fdd_A 390 CMQGMIPYL-PELIPHLIQCLS----DKKALVRSITCWTLSRY 427 (852)
T ss_dssp THHHHGGGH-HHHHHHHHHHTT----CSSHHHHHHHHHHHHHT
T ss_pred chHHHHHHH-HHHHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 321 11111 234555666554 34557888888887653
No 50
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.84 E-value=0.00026 Score=71.61 Aligned_cols=232 Identities=12% Similarity=0.048 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHhcCCCChhhHHHHHHcCc--HHHHHHHHhccc------------CC--cHhHHHHHHHHHHHHhcCC
Q 016639 144 NEMMGLFDKLIELCGGNEGSVNAAVATKNGG--VELVCSICYKMR------------CG--SKRVLDSCLKTMALLVHDV 207 (385)
Q Consensus 144 ~~~~~al~~L~~lc~~~~~~~~r~~~~~~Ga--ip~Lv~lL~~~~------------~~--d~~vl~~Al~aLa~L~~~~ 207 (385)
+..--++..|..+++. ++.|..+.++++ +|+++..++... .+ ...++..++-+++-|+...
T Consensus 183 ~~~~i~v~~L~~Ll~~---~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~ 259 (480)
T 1ho8_A 183 DTCYVCIRLLQELAVI---PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP 259 (480)
T ss_dssp HHHHHHHHHHHHHHTS---HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH
T ss_pred chHHHHHHHHHHHhcc---hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCH
Confidence 3344688999999984 999999877654 788877655321 01 2456778888888887764
Q ss_pred ccchhHhhCCCc--HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh----hh-HHHHHhCCChHHHHHHHccC--ChHHH
Q 016639 208 QSTETFRTGGGP--KLLVNILIDGNEDPEILNSGFAVVAASATGNE----VV-KESYMELKIDELILEILSRQ--RNDSI 278 (385)
Q Consensus 208 ~~~~~i~~~ggi--~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e----~n-r~~iv~~G~i~~Lv~lL~~~--~~~v~ 278 (385)
+..+.+...+.+ ..|+++++. ....+|++-++.+++|+..... .. ++.++..++ ++++..|... +++-+
T Consensus 260 ~~~~~l~~~~i~~~~~L~~i~k~-s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl 337 (480)
T 1ho8_A 260 VFANELVQKYLSDFLDLLKLVKI-TIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEEL 337 (480)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHhcchHHHHHHHHHHHh-hccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHH
Confidence 433444444422 456677776 3578999999999999887652 11 223333444 5566666442 44333
Q ss_pred HHHHHHH--------HHhcCCCccchhhhh-------ch-------hHHHHHHhc--CcHHHHHHHHhcC---------C
Q 016639 279 QSLYDAI--------RVLLTPDDDQVVASQ-------VY-------GYARRFAKI--GIARALVHSLHAG---------L 325 (385)
Q Consensus 279 k~A~~aL--------~~Lt~~Dd~rv~~g~-------a~-------~~a~~I~e~--Ggi~~Lv~lL~~~---------~ 325 (385)
.+-...| ..||.-|..+.+.-. .| +|+++|-+. -.++.|+++|.+. .
T Consensus 338 ~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~ 417 (480)
T 1ho8_A 338 RQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQ 417 (480)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHH
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCC
Confidence 3333322 334444444433222 12 778888754 3689999999852 2
Q ss_pred CHHHHHHHHHHHHHhhcC-hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 326 SSPSLISASIALKAVAVN-DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 326 ~~~v~~~a~~aL~~La~~-~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
|+.++.-||.=++.++.. ++-+..+.+.||=+.++++|. |+|.+|.++|+.++-+
T Consensus 418 d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~----h~d~~Vr~~AL~avQk 473 (480)
T 1ho8_A 418 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN----HSDSRVKYEALKATQA 473 (480)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS----CSSHHHHHHHHHHHHH
T ss_pred CcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhc----CCCHHHHHHHHHHHHH
Confidence 567888899999988864 577788889999999999985 4566899999988754
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.47 E-value=0.0021 Score=66.71 Aligned_cols=145 Identities=10% Similarity=-0.028 Sum_probs=101.3
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~ 202 (385)
.+..+...+... ++.....|+.++..+++. +++.. .+.+.++.|..+|.. .++.++..|+.+|..
T Consensus 122 l~~~l~~~L~d~-------~~~VRk~A~~al~~i~~~--~p~~~---~~~~~~~~l~~lL~d---~d~~V~~~A~~aL~~ 186 (591)
T 2vgl_B 122 LCEPLRKCLKDE-------DPYVRKTAAVCVAKLHDI--NAQMV---EDQGFLDSLRDLIAD---SNPMVVANAVAALSE 186 (591)
T ss_dssp HHHHHHHHSSCS-------CHHHHHHHHHHHHHHHHS--SCCCH---HHHHHHHHHHHTTSC---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhh--Chhhc---ccccHHHHHHHHhCC---CChhHHHHHHHHHHH
Confidence 345566666544 778888999999999986 66522 235678999999875 588999999999999
Q ss_pred HhcCCccc-hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639 203 LVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (385)
Q Consensus 203 L~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A 281 (385)
++...+.. ......+.++.|+..|.. .++-.+...++++...+..++... ...++.+..+|++.+..|+.+|
T Consensus 187 i~~~~~~~~~~~l~~~~~~~Ll~~l~~--~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea 259 (591)
T 2vgl_B 187 ISESHPNSNLLDLNPQNINKLLTALNE--CTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSA 259 (591)
T ss_dssp HTTSCCSCCSCCCHHHHHHHHHHHHHH--CCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHH
T ss_pred HHhhCCCccchhccHHHHHHHHHcCCC--CCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHH
Confidence 87654311 001112335666776664 356667777888877664443332 2456788888887777899999
Q ss_pred HHHHHHhc
Q 016639 282 YDAIRVLL 289 (385)
Q Consensus 282 ~~aL~~Lt 289 (385)
++++..+.
T Consensus 260 ~~~i~~l~ 267 (591)
T 2vgl_B 260 VKVLMKFL 267 (591)
T ss_dssp HHHHHHSC
T ss_pred HHHHHHHh
Confidence 99999986
No 52
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.36 E-value=0.0039 Score=67.06 Aligned_cols=230 Identities=14% Similarity=0.010 Sum_probs=137.6
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
..++.|...+.+. +.+....+++.|..+++. .+..-.-.. .+.++.++.+++. .+..+...|+..+.
T Consensus 215 ~~l~~l~~~~~d~-------~~~vr~~a~~~L~~l~~~--~~~~~~~~l-~~l~~~l~~~~~~---~~~~vr~~a~e~l~ 281 (852)
T 4fdd_A 215 SFIENLFALAGDE-------EPEVRKNVCRALVMLLEV--RMDRLLPHM-HNIVEYMLQRTQD---QDENVALEACEFWL 281 (852)
T ss_dssp HHHHHHHHHHTCC-------CHHHHHHHHHHHHHHHHH--CHHHHGGGH-HHHHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHh--CHHHHHHHH-HHHHHHHHHHccC---CcHHHHHHHHHHHH
Confidence 4566666655443 677788899999999875 443211111 1366777777765 47889999999999
Q ss_pred HHhcCCccchhHhhC---CCcHHHHHHHh----------cC--C--------CCHHHHHHHHHHHHHHhcCChhhHHHHH
Q 016639 202 LLVHDVQSTETFRTG---GGPKLLVNILI----------DG--N--------EDPEILNSGFAVVAASATGNEVVKESYM 258 (385)
Q Consensus 202 ~L~~~~~~~~~i~~~---ggi~~Lv~lL~----------~~--~--------~~~~v~~~a~~~L~~~~~~~e~nr~~iv 258 (385)
.++..... ..++.. .-++.++..|. .. . .+-.+...++.++..++....+ .++
T Consensus 282 ~l~~~~~~-~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~---~~~ 357 (852)
T 4fdd_A 282 TLAEQPIC-KDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD---ELL 357 (852)
T ss_dssp HHTTSTTH-HHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG---GGH
T ss_pred HHhcchhH-HHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH---HHH
Confidence 88764321 122211 22444555542 11 0 1113455666676666543221 122
Q ss_pred hCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016639 259 ELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK 338 (385)
Q Consensus 259 ~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~ 338 (385)
..+++.+...|.+.+..++..|+++|.+++..-... .... -.+.++.|+.+|+.. ++.|+..++++|.
T Consensus 358 -~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~---------~~~~-l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~ 425 (852)
T 4fdd_A 358 -PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQG---------MIPY-LPELIPHLIQCLSDK-KALVRSITCWTLS 425 (852)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHH---------HGGG-HHHHHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHH---------HHHH-HHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 246777888888777788888999999998533211 0001 135688999988763 7789999999999
Q ss_pred HhhcChHH-HHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 339 AVAVNDEI-CKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 339 ~La~~~e~-c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+++..-.. .....-.+.++.+++.|.+ .+..+.+.+|.+|.+
T Consensus 426 ~l~~~~~~~~~~~~~~~ll~~L~~~L~d----~~~~vr~~a~~aL~~ 468 (852)
T 4fdd_A 426 RYAHWVVSQPPDTYLKPLMTELLKRILD----SNKRVQEAACSAFAT 468 (852)
T ss_dssp HTHHHHHHSCTTTTHHHHHHHHHHHHTC----SSHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHHHH
Confidence 98753110 0000111345566666654 345888999988865
No 53
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.32 E-value=0.007 Score=62.77 Aligned_cols=203 Identities=13% Similarity=0.066 Sum_probs=125.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~ 221 (385)
+.+..+-+.-.+..+++. +++... -+++.|..-|.+ .++.+...|+++|+++.. +.+.+ .-++.
T Consensus 62 ~~~~Krl~yl~l~~~~~~--~~e~~~-----l~~n~l~kdL~~---~n~~ir~~AL~~L~~i~~-----~~~~~-~l~~~ 125 (591)
T 2vgl_B 62 NLELKKLVYLYLMNYAKS--QPDMAI-----MAVNSFVKDCED---PNPLIRALAVRTMGCIRV-----DKITE-YLCEP 125 (591)
T ss_dssp CHHHHHHHHHHHHHHHHH--SHHHHH-----TTHHHHGGGSSS---SSHHHHHHHHHHHHTCCS-----GGGHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHccc--CchHHH-----HHHHHHHHHcCC---CCHHHHHHHHHHHHcCCh-----HHHHH-HHHHH
Confidence 445444444555555553 344221 134455555554 578889999999998742 22221 12456
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhc
Q 016639 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV 301 (385)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a 301 (385)
+.++|.+ .++.|.+.|++++..++..+++. +.+.+.++.|..+|...+..|+.+|+++|..++.++.....+
T Consensus 126 l~~~L~d--~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~--- 197 (591)
T 2vgl_B 126 LRKCLKD--EDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL--- 197 (591)
T ss_dssp HHHHSSC--SCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC---
T ss_pred HHHHcCC--CChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch---
Confidence 7788874 58999999999999998766542 334578899999998777789999999999998655321000
Q ss_pred hhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChH-HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHH
Q 016639 302 YGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDE-ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCS 380 (385)
Q Consensus 302 ~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e-~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~ 380 (385)
-...+.+..|+..|... ++-++..++.+|..++..++ .... .++.+..++ .+.|..|.-+|+.
T Consensus 198 ------~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~~~~-----~l~~l~~~l----~~~~~~V~~ea~~ 261 (591)
T 2vgl_B 198 ------DLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDREAQS-----ICERVTPRL----SHANSAVVLSAVK 261 (591)
T ss_dssp ------CCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHHHHH-----HHHHHTTCS----CSSTTHHHHHHHH
T ss_pred ------hccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHHHHH-----HHHHHHHHH----cCCChHHHHHHHH
Confidence 00123456777777664 66566677778877775432 2111 233333333 3444477777777
Q ss_pred HHhc
Q 016639 381 LLSK 384 (385)
Q Consensus 381 ~Lr~ 384 (385)
+|..
T Consensus 262 ~i~~ 265 (591)
T 2vgl_B 262 VLMK 265 (591)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
No 54
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.27 E-value=0.0068 Score=61.27 Aligned_cols=174 Identities=5% Similarity=-0.067 Sum_probs=111.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~ 221 (385)
+.+....++..|..+++. .+.. ......+|.|..++.. .+..+...|+.+|+.+....+ +.......++.
T Consensus 177 ~~~VR~~a~~~l~~l~~~--~~~~---~~~~~l~~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~--~~~~~~~~~~~ 246 (588)
T 1b3u_A 177 TPMVRRAAASKLGEFAKV--LELD---NVKSEIIPMFSNLASD---EQDSVRLLAVEACVNIAQLLP--QEDLEALVMPT 246 (588)
T ss_dssp CHHHHHHHHHHHHHHHHT--SCHH---HHHHTHHHHHHHHHTC---SCHHHHTTHHHHHHHHHHHSC--HHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHHHHHH--hcHH---hHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHH
Confidence 566677778888887764 2221 1124567888888865 467888888888888765432 22233345677
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCC--Cccchhhh
Q 016639 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTP--DDDQVVAS 299 (385)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~--Dd~rv~~g 299 (385)
+.+++.+ ++..+...++.++..++..... .......++.++.+|+..+..+++.|+++|..++.. ++.+.
T Consensus 247 l~~~~~d--~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~--- 318 (588)
T 1b3u_A 247 LRQAAED--KSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE--- 318 (588)
T ss_dssp HHHHHTC--SSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHH---
T ss_pred HHHHccC--CCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhh---
Confidence 7777764 4678888999998887643211 123345789999999887778888899999888632 22110
Q ss_pred hchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 300 QVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 300 ~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
...-...++.+..+++.. +..++..++.+|..++
T Consensus 319 -------~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 319 -------NVIMSQILPCIKELVSDA-NQHVKSALASVIMGLS 352 (588)
T ss_dssp -------HHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGH
T ss_pred -------hHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 011123456666666553 5667777777776665
No 55
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.24 E-value=0.021 Score=55.16 Aligned_cols=178 Identities=10% Similarity=0.057 Sum_probs=125.7
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHh-hCCCcH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFR-TGGGPK 220 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~-~~ggi~ 220 (385)
+.++++.+|-.|+..... +..-..-++..||+..|+..... ++...+..+|++|..|....+-...++ ....|.
T Consensus 131 ~~~~lr~aLfsLk~~~q~--D~~Fa~EFI~~~GL~~Li~vi~~---~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~ 205 (339)
T 3dad_A 131 SGPELRRSLFSLKQIFQE--DKDLVPEFVHSEGLSCLIRVGAA---ADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQ 205 (339)
T ss_dssp CHHHHHHHHHHHHHHHHT--CTTHHHHHHHTTHHHHHHHHHTT---SCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhc--chHHHHHHHHhccHHHHHHHHHh---cChHHHHHHHHHHHHHHhccccccchhCCHHHHH
Confidence 568899999999995554 78888888999999999999977 488899999999999987644444555 445677
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCC----------ChHHHHHHHc---cCChHHHHHHHHHHHH
Q 016639 221 LLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELK----------IDELILEILS---RQRNDSIQSLYDAIRV 287 (385)
Q Consensus 221 ~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G----------~i~~Lv~lL~---~~~~~v~k~A~~aL~~ 287 (385)
.++.++.+ .+..|.+.++..|...+...|.|-..+.++= -.+.|+.+|+ ..+.+++.+|...|=.
T Consensus 206 ~lyslv~s--~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~ 283 (339)
T 3dad_A 206 WLYTLCAS--LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINK 283 (339)
T ss_dssp HHHHGGGC--SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHcC--ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 77777773 6789999999999999888887776665432 2789999997 4555777777665554
Q ss_pred hc--CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHH
Q 016639 288 LL--TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLI 331 (385)
Q Consensus 288 Lt--~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~ 331 (385)
+- .+|+.+. ++-...+-+.|.=..+...|+... ++++++
T Consensus 284 lL~~apd~d~~-----~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 284 TLAALPDQDSF-----YDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHCSSHHHH-----HHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHhcCCChhHH-----HHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 42 2221100 122223334555566777777764 555543
No 56
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=97.18 E-value=0.0085 Score=60.55 Aligned_cols=182 Identities=11% Similarity=0.034 Sum_probs=114.8
Q ss_pred CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (385)
Q Consensus 173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (385)
..+|.|+.++.. .+..+...++.+|..+...-. ..+....-++.++.+|.+ ++..+...++.++..++.....
T Consensus 402 ~~lp~l~~~~~d---~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d--~~~~Vr~~a~~~l~~l~~~~~~ 474 (588)
T 1b3u_A 402 SLLPAIVELAED---AKWRVRLAIIEYMPLLAGQLG--VEFFDEKLNSLCMAWLVD--HVYAIREAATSNLKKLVEKFGK 474 (588)
T ss_dssp HHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHC--GGGCCHHHHHHHHHGGGC--SSHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHHhCc
Confidence 356777776654 467777788888887764211 122222335667777764 4678888999999887654322
Q ss_pred hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHH
Q 016639 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (385)
Q Consensus 253 nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~ 332 (385)
.+....++|.|+.++...+..++..+++++..++.. +|. .......++.|+.+++.. ++.++..
T Consensus 475 ---~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~------~~~------~~~~~~~~~~l~~~l~d~-~~~Vr~~ 538 (588)
T 1b3u_A 475 ---EWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV------CGQ------DITTKHMLPTVLRMAGDP-VANVRFN 538 (588)
T ss_dssp ---HHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH------HHH------HHHHHHTHHHHHHGGGCS-CHHHHHH
T ss_pred ---hhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHh------cCH------HHHHHHHHHHHHhhCCCC-CchHHHH
Confidence 122346788888877766667888899999988631 111 011234678888888763 6789999
Q ss_pred HHHHHHHhhcC--hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhcC
Q 016639 333 ASIALKAVAVN--DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSKV 385 (385)
Q Consensus 333 a~~aL~~La~~--~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~l 385 (385)
++.+|..++.. .++ .....++.|..+ ..+.+.+|-..++.+|..|
T Consensus 539 a~~~l~~l~~~~~~~~----~~~~~~p~l~~l----~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 539 VAKSLQKIGPILDNST----LQSEVKPILEKL----TQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHGGGSCHHH----HHHHHHHHHHHH----TTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhchhh----hHHHHHHHHHHH----cCCCchhHHHHHHHHHHHh
Confidence 99999999753 222 111223334343 2345568888888887654
No 57
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.93 E-value=0.17 Score=52.69 Aligned_cols=169 Identities=8% Similarity=-0.033 Sum_probs=113.8
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~ 221 (385)
+.+.-+-.--.+...++. +++-... ++..|..-|.+ .++.+...|+++|+++.. +++. ...++.
T Consensus 83 ~~~~Krl~Yl~~~~~~~~--~~e~~~l-----~in~l~kDL~~---~n~~vr~lAL~~L~~i~~-----~~~~-~~l~~~ 146 (618)
T 1w63_A 83 KFTDKRIGYLGAMLLLDE--RQDVHLL-----MTNCIKNDLNH---STQFVQGLALCTLGCMGS-----SEMC-RDLAGE 146 (618)
T ss_dssp SHHHHHHHHHHHHHHCCC--CHHHHHH-----HHHHHHHHHSC---SSSHHHHHHHHHHHHHCC-----HHHH-HHHHHH
T ss_pred chHHHHHHHHHHHHHhCC--CcHHHHH-----HHHHHHHhcCC---CCHhHHHHHHHHHHhcCC-----HHHH-HHHHHH
Confidence 344333333356666664 4442222 36667777766 477889999999999864 2333 244677
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhc
Q 016639 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQV 301 (385)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a 301 (385)
+.++|++ .++-|.+.|+.++.++..++++.. .+.++.+..+|...+..|+..|+++|..++..+.
T Consensus 147 l~~~L~~--~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~-------- 211 (618)
T 1w63_A 147 VEKLLKT--SNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP-------- 211 (618)
T ss_dssp HHHHHHS--CCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH--------
T ss_pred HHHHHcC--CCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh--------
Confidence 7888875 578999999999999987776532 2678888888887777899999999999975331
Q ss_pred hhHHHHHHhcCcHHHHHHHHhc--------------CCCHHHHHHHHHHHHHhhcCh
Q 016639 302 YGYARRFAKIGIARALVHSLHA--------------GLSSPSLISASIALKAVAVND 344 (385)
Q Consensus 302 ~~~a~~I~e~Ggi~~Lv~lL~~--------------~~~~~v~~~a~~aL~~La~~~ 344 (385)
+....+ ...++.++.+|+. ..++-.+..+..+|..++..+
T Consensus 212 -~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~ 265 (618)
T 1w63_A 212 -DMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND 265 (618)
T ss_dssp -HHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC
T ss_pred -HHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC
Confidence 111112 2567888888764 125666677778888887653
No 58
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=96.91 E-value=0.049 Score=52.65 Aligned_cols=191 Identities=10% Similarity=0.067 Sum_probs=130.1
Q ss_pred HHHHHHhcccCCcHhHHHHHHHHHHHHh-cCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHH
Q 016639 177 LVCSICYKMRCGSKRVLDSCLKTMALLV-HDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKE 255 (385)
Q Consensus 177 ~Lv~lL~~~~~~d~~vl~~Al~aLa~L~-~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~ 255 (385)
.+++-|.+ .+.+.+..++..|..+. .+.+.-..|++.+|+..|+.+.... +.+.+..+++++..+. .+..-..
T Consensus 122 ~iiekL~~---~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM-~~v~Gm~ 195 (339)
T 3dad_A 122 AILEKLYS---SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLM-LFVDGML 195 (339)
T ss_dssp HHHHHHHH---CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHT-TSHHHHH
T ss_pred HHHHHHhc---CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHH-hcccccc
Confidence 35555655 35667888899999844 4554468899999999999999764 7899999999999986 4666665
Q ss_pred HHHh-CCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhc-C--cHHHHHHHHhcC--CCHHH
Q 016639 256 SYME-LKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI-G--IARALVHSLHAG--LSSPS 329 (385)
Q Consensus 256 ~iv~-~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~-G--gi~~Lv~lL~~~--~~~~v 329 (385)
.|+. ...|..|..++.+....|+|.|...|.+++..++...+ --...++..... | -...|+..|+.. .|..+
T Consensus 196 gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~--lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 196 GVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAP--LFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHH--HHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred chhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccch--HHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 6663 45788888888876668999999999999865542111 011222222322 2 277899999732 37778
Q ss_pred HHHHHHHHHHhh---cC----hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHH
Q 016639 330 LISASIALKAVA---VN----DEICKSVAENGGIDALLRCIDDSGLQGNKTVARI 377 (385)
Q Consensus 330 ~~~a~~aL~~La---~~----~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~ 377 (385)
+.++...+-.+- .. .+++..+.+.|--..+...|..+..+. ++.+|
T Consensus 274 q~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~--~l~~Q 326 (339)
T 3dad_A 274 LVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDV--DLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCH--HHHHH
T ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCH--HHHHH
Confidence 888776655552 21 256667777776667778787754443 55554
No 59
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.81 E-value=0.00014 Score=60.18 Aligned_cols=119 Identities=13% Similarity=0.036 Sum_probs=78.9
Q ss_pred CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (385)
Q Consensus 173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (385)
..++.|+.+|++ .++.+...|+++|+.+ +. ..++.|+++|++ ++..+...++++|..+. ++
T Consensus 12 ~~~~~l~~~L~~---~~~~vR~~A~~~L~~~--~~---------~~~~~L~~~L~d--~~~~vR~~A~~aL~~~~--~~- 72 (131)
T 1te4_A 12 SGLVPRGSHMAD---ENKWVRRDVSTALSRM--GD---------EAFEPLLESLSN--EDWRIRGAAAWIIGNFQ--DE- 72 (131)
T ss_dssp ---------CCS---SCCCSSSSCCSSTTSC--SS---------TTHHHHHHGGGC--SCHHHHHHHHHHHGGGC--SH-
T ss_pred ccHHHHHHHhcC---CCHHHHHHHHHHHHHh--Cc---------hHHHHHHHHHcC--CCHHHHHHHHHHHHhcC--CH-
Confidence 456777787765 3566666666666643 21 136888888885 57889999999988653 22
Q ss_pred hHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHH
Q 016639 253 VKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (385)
Q Consensus 253 nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~ 332 (385)
..++.|+.+|...+..|+..|+++|..+.. ..+++.|+.+|+. .++.+...
T Consensus 73 --------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------------------~~a~~~L~~~l~d-~~~~vr~~ 123 (131)
T 1te4_A 73 --------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------------------ERVRAAMEKLAET-GTGFARKV 123 (131)
T ss_dssp --------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------------------HHHHHHHHHHTTS-CCTHHHHH
T ss_pred --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHhC-CCHHHHHH
Confidence 247889999988777899999999987741 1247888888865 36778888
Q ss_pred HHHHHHH
Q 016639 333 ASIALKA 339 (385)
Q Consensus 333 a~~aL~~ 339 (385)
++.+|.+
T Consensus 124 A~~aL~~ 130 (131)
T 1te4_A 124 AVNYLET 130 (131)
T ss_dssp HHHHGGG
T ss_pred HHHHHHh
Confidence 8888764
No 60
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.61 E-value=0.016 Score=56.65 Aligned_cols=183 Identities=9% Similarity=-0.000 Sum_probs=112.8
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCc-------------
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ------------- 208 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~------------- 208 (385)
+.+....+++.|..++.. .+..-.-....+.++.++..++. .+..+...|+..+..++....
T Consensus 230 ~~~vr~~~~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 304 (462)
T 1ibr_B 230 DTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKS---DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (462)
T ss_dssp SHHHHHHHHHHHHHHHHH--CGGGCTTTTTTTHHHHHHHHHHC---SSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSS
T ss_pred CHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 556666778888877764 32210000111567777777765 477888889988888765320
Q ss_pred -----cchhHhh---CCCcHHHHHHHhcC-----CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh
Q 016639 209 -----STETFRT---GGGPKLLVNILIDG-----NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN 275 (385)
Q Consensus 209 -----~~~~i~~---~ggi~~Lv~lL~~~-----~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~ 275 (385)
....++. ...+|.+++.|... .++..+...++.+|..++....+ .+. ..+++.+...|.+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~ 380 (462)
T 1ibr_B 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDW 380 (462)
T ss_dssp SCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSH
T ss_pred CCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCCh
Confidence 0011111 22345556666542 12335777888888877654432 222 2466777778877666
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639 276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN 343 (385)
Q Consensus 276 ~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~ 343 (385)
.++..|+.+|.+++.+-+... + +... ...++.|+.+|+.. ++.++..+|++|.+++..
T Consensus 381 ~~r~aal~~l~~l~~~~~~~~-~-------~~~l-~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 381 RYRDAAVMAFGCILEGPEPSQ-L-------KPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHHHHHHHTSSSSCTTT-T-------CTTT-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHH-H-------HHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence 788889999999985432110 0 0011 45789999999874 788999999999999753
No 61
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.54 E-value=0.02 Score=52.71 Aligned_cols=178 Identities=7% Similarity=0.089 Sum_probs=128.9
Q ss_pred CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 016639 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE 251 (385)
Q Consensus 173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e 251 (385)
+.+..|+.+|.. .|..+...++-+|..++.+-+. .....=...++.+++++++ ++..+.-.|++++..+..+.+
T Consensus 33 ~~l~~L~~LL~d---kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~--~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 33 RALFLILELAGE---DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ--ENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp HHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS--TTHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHcCCC
Confidence 357778888865 5889999999999999876432 1222334678888888875 688999999999999998888
Q ss_pred hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 016639 252 VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (385)
Q Consensus 252 ~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~ 331 (385)
--...+.+ ++..|++++.++++-...+|+..+..|-.-+..+ +.+..+.+++.+ .|..++.
T Consensus 108 L~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~----------------~V~~~l~sLl~S-kd~~vK~ 168 (265)
T 3b2a_A 108 MGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSK----------------LVRTYINELVVS-PDLYTKV 168 (265)
T ss_dssp BCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCH----------------HHHHHHHHHHTC-SSHHHHH
T ss_pred CCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccchH----------------HHHHHHHHHHhC-CChhHHH
Confidence 77777765 6789999999888777778999999884322222 246788999954 4888999
Q ss_pred HHHHHHHHhhcCh---HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 332 SASIALKAVAVND---EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 332 ~a~~aL~~La~~~---e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
.++.+|.+++.+. ++-..|. .++. ++++ +.|..+.+-++.+|-
T Consensus 169 agl~~L~eia~~S~D~~i~~~I~--~eI~---elL~----~eD~~l~e~aLd~Le 214 (265)
T 3b2a_A 169 AGFCLFLNMLNSSADSGHLTLIL--DEIP---SLLQ----NDNEFIVELALDVLE 214 (265)
T ss_dssp HHHHHHHHHGGGCSSCCCGGGTT--TTHH---HHHT----CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCCHHHHHHHH--HHHH---HHHc----CCCHHHHHHHHHHHH
Confidence 9999999998753 2333332 2222 3343 345578887777764
No 62
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.41 E-value=0.12 Score=53.69 Aligned_cols=223 Identities=13% Similarity=0.049 Sum_probs=119.6
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~ 202 (385)
++..|..++.+. +.+...-++..|..+... +|. .+ ....+.++.++.. .|..+...|+..|..
T Consensus 314 a~~~L~~~L~~~-------d~~vr~~aL~~L~~i~~~--~p~---~~--~~~~~~i~~~l~d---~d~~Ir~~alelL~~ 376 (618)
T 1w63_A 314 AINILGRFLLNN-------DKNIRYVALTSLLKTVQT--DHN---AV--QRHRSTIVDCLKD---LDVSIKRRAMELSFA 376 (618)
T ss_dssp HHHHHHHHHTCS-------STTTHHHHHHHHHHHHHH--HHH---HH--GGGHHHHHHGGGS---SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-------CCchHHHHHHHHHHHHhh--CHH---HH--HHHHHHHHHHccC---CChhHHHHHHHHHHH
Confidence 444555554432 334444555555555442 221 11 1234455666654 578888888998888
Q ss_pred HhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-------
Q 016639 203 LVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN------- 275 (385)
Q Consensus 203 L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~------- 275 (385)
+++.... +.+ ++.+...+.. .+.++...++.+|..+|.+...+...+ ++.|+++|+....
T Consensus 377 l~~~~nv-~~i-----v~eL~~~l~~--~d~e~r~~~v~~I~~la~k~~~~~~~~-----v~~ll~lL~~~~~~v~~~~~ 443 (618)
T 1w63_A 377 LVNGNNI-RGM-----MKELLYFLDS--CEPEFKADCASGIFLAAEKYAPSKRWH-----IDTIMRVLTTAGSYVRDDAV 443 (618)
T ss_dssp HCCSSST-HHH-----HHHHHHHHHH--CCHHHHHHHHHHHHHHHHSSCCCHHHH-----HHHHHHHHHHTGGGSCSSHH
T ss_pred HcccccH-HHH-----HHHHHHHHHh--CCHHHHHHHHHHHHHHHHHhCccHHHH-----HHHHHHHHHhccchhHHHHH
Confidence 8764311 222 2556666654 578889999999999888765444433 2344444443321
Q ss_pred -----------HHHHHHHHHHHHhcCCCccchhhhhc-----hhHHHHHHh-------------cCcHHHHHHHHhcCC-
Q 016639 276 -----------DSIQSLYDAIRVLLTPDDDQVVASQV-----YGYARRFAK-------------IGIARALVHSLHAGL- 325 (385)
Q Consensus 276 -----------~v~k~A~~aL~~Lt~~Dd~rv~~g~a-----~~~a~~I~e-------------~Ggi~~Lv~lL~~~~- 325 (385)
+.+..++..|..+..++....+..++ .+++..+.. ..+++.|..+++.+.
T Consensus 444 ~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 523 (618)
T 1w63_A 444 PNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISNMS 523 (618)
T ss_dssp HHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhccCC
Confidence 11122232232222111000000010 122222221 013566666666544
Q ss_pred CHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 326 SSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 326 ~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
++.++..+..++..++.+.+- ..+.+..++..+..+.|.+|...|+..++
T Consensus 524 ~~~vr~~~lta~~Kl~~~~~~--------~~~~l~~~L~~~~~~~d~evrdRA~~y~~ 573 (618)
T 1w63_A 524 TSVTRGYALTAIMKLSTRFTC--------TVNRIKKVVSIYGSSIDVELQQRAVEYNA 573 (618)
T ss_dssp CHHHHHHHHHHHHHHHTTCSS--------CHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCcc--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 677888889999888876421 24455566666667777788888887654
No 63
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.30 E-value=0.085 Score=55.98 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=123.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCc-------------
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ------------- 208 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~------------- 208 (385)
+.+....+++.|..++.. .+..-.-......++.++..+.. .++.+...|+..+..++....
T Consensus 230 ~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~~l~~~~~~~~~~---~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~ 304 (876)
T 1qgr_A 230 DTRVRVAALQNLVKIMSL--YYQYMETYMGPALFAITIEAMKS---DIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 304 (876)
T ss_dssp SHHHHHHHHHHHHHHHHH--SGGGCHHHHTTTHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHHHHHHHhHhhhhccccccC
Confidence 445555677777777764 33321112223567777776654 467888888888887764310
Q ss_pred -----cchhHhh---CCCcHHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh
Q 016639 209 -----STETFRT---GGGPKLLVNILIDGN-----EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN 275 (385)
Q Consensus 209 -----~~~~i~~---~ggi~~Lv~lL~~~~-----~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~ 275 (385)
....+.. ..-++.+++.|.... ++..+...+..++..++....+ .++ ..+++.+...|.+.+.
T Consensus 305 ~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~---~~~-~~~l~~l~~~l~~~~~ 380 (876)
T 1qgr_A 305 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDW 380 (876)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSH
T ss_pred CCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH---hhH-HHHHHHHHHHccCCCh
Confidence 0000100 122455666665321 2345666777777766543221 122 1455666677776666
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HH--HHHHHH
Q 016639 276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EI--CKSVAE 352 (385)
Q Consensus 276 ~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~--c~~I~e 352 (385)
.++..|+++|..++..-. .+...... ...++.|+..|... +..++..++++|.+++... +. .....
T Consensus 381 ~~r~~a~~~l~~i~~~~~--------~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~l- 449 (876)
T 1qgr_A 381 RYRDAAVMAFGCILEGPE--------PSQLKPLV-IQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYL- 449 (876)
T ss_dssp HHHHHHHHHHHHTSSSSC--------HHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTH-
T ss_pred HHHHHHHHHHHHHHcCCC--------HHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhCchhcccHHHH-
Confidence 788889999999985321 01111111 23688899998763 6778999999999997531 10 00000
Q ss_pred cCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 353 NGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 353 ~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
...++.++..|.+ . ..+...++.+|.+
T Consensus 450 ~~~l~~l~~~l~~---~--~~v~~~a~~al~~ 476 (876)
T 1qgr_A 450 APLLQCLIEGLSA---E--PRVASNVCWAFSS 476 (876)
T ss_dssp HHHHHHHHHHTTS---C--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC---C--HHHHHHHHHHHHH
Confidence 1234455555543 2 4677777877754
No 64
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=96.29 E-value=0.0051 Score=50.58 Aligned_cols=88 Identities=7% Similarity=0.048 Sum_probs=69.1
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (385)
.++.|+.+|+. .++.+...|+++|+.+.. ..+++.|+.+|++ ++..|...++++|..+. ++
T Consensus 43 ~~~~L~~~L~d---~~~~vR~~A~~aL~~~~~----------~~a~~~L~~~L~d--~~~~VR~~A~~aL~~~~--~~-- 103 (131)
T 1te4_A 43 AFEPLLESLSN---EDWRIRGAAAWIIGNFQD----------ERAVEPLIKLLED--DSGFVRSGAARSLEQIG--GE-- 103 (131)
T ss_dssp THHHHHHGGGC---SCHHHHHHHHHHHGGGCS----------HHHHHHHHHHHHH--CCTHHHHHHHHHHHHHC--SH--
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHcC--CCHHHHHHHHHHHHHhC--cH--
Confidence 37899999986 588999999999998642 1247899999975 57889999999998763 22
Q ss_pred HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHH
Q 016639 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRV 287 (385)
Q Consensus 254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~ 287 (385)
.+++.|+.+|+..+..|+..|+++|..
T Consensus 104 -------~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 104 -------RVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp -------HHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred -------HHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 357889999987776888888888754
No 65
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=96.09 E-value=0.019 Score=56.07 Aligned_cols=159 Identities=4% Similarity=-0.000 Sum_probs=97.6
Q ss_pred CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--chhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 016639 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGN 250 (385)
Q Consensus 173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~ 250 (385)
+.+|.|++.+.+.. .+..+...|+.+|..++..... -.... ...++.++.+|.+...+.++...+++++.++...-
T Consensus 128 ~ll~~L~~~l~~~~-~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 128 ELIPQLVANVTNPN-STEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp THHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhccCC-CCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57888888887620 0677888899999998753211 01111 13567777888764336889999999998865322
Q ss_pred hhhHH-HHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639 251 EVVKE-SYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329 (385)
Q Consensus 251 e~nr~-~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v 329 (385)
+.+-. .....-+++.|...+.....++++.+|.+|..+........ . . ....+.++.++..++.. ++.+
T Consensus 206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~--~---~----~~~~~l~~~~~~~~~~~-~~~v 275 (462)
T 1ibr_B 206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYM--E---T----YMGPALFAITIEAMKSD-IDEV 275 (462)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGC--T---T----TTTTTHHHHHHHHHHCS-SHHH
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH--H---H----HHHHHHHHHHHHHHcCC-chHH
Confidence 22111 00111135666666666666888899999999874221110 0 0 11115567777777663 6778
Q ss_pred HHHHHHHHHHhhcC
Q 016639 330 LISASIALKAVAVN 343 (385)
Q Consensus 330 ~~~a~~aL~~La~~ 343 (385)
...++..+..++..
T Consensus 276 ~~~a~~~l~~~~~~ 289 (462)
T 1ibr_B 276 ALQGIEFWSNVCDE 289 (462)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877654
No 66
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.88 E-value=0.06 Score=48.61 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=110.8
Q ss_pred HHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--chhHhhCCCcHHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639 177 LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRTGGGPKLLVNILI-DGNEDPEILNSGFAVVAASATGNEVV 253 (385)
Q Consensus 177 ~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~-~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (385)
.+.+.+.+ .+......|+..|..++.+.+. ...+ ..-++.|..+|. + .+..+...++.++..++.+-...
T Consensus 19 ~l~~~l~s---~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd--~~~~V~~~a~~~l~~la~~l~~~ 91 (242)
T 2qk2_A 19 DFYDKLEE---KKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKD--SNVVLVAMAGKCLALLAKGLAKR 91 (242)
T ss_dssp THHHHHTC---SSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHhhhcc---CCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHHhhh
Confidence 36666655 4777888888888888876321 0111 122455566663 4 57889999999999988432211
Q ss_pred HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHH
Q 016639 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISA 333 (385)
Q Consensus 254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a 333 (385)
-... -..+++.|+..|...+..++..|+.+|.++...-. + ...++.|...|+. .++.++..+
T Consensus 92 ~~~~-~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--------------~--~~ll~~l~~~l~~-~~~~vr~~~ 153 (242)
T 2qk2_A 92 FSNY-ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--------------L--EAQQESIVESLSN-KNPSVKSET 153 (242)
T ss_dssp GHHH-HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--------------H--HHHHHHHHHHTTC-SCHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--------------H--HHHHHHHHHHHcC-CChHHHHHH
Confidence 1111 13478899999988887888889999998864211 1 1246778888875 377899999
Q ss_pred HHHHHHhhcC--hH--HHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 334 SIALKAVAVN--DE--ICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 334 ~~aL~~La~~--~e--~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
+..|..+..+ ++ +...+- --++.|+.++.+ .+.+|-+.|..+|.
T Consensus 154 l~~l~~~l~~~~~~~~~~~~l~--~l~p~l~~~l~D----~~~~VR~~A~~~l~ 201 (242)
T 2qk2_A 154 ALFIARALTRTQPTALNKKLLK--LLTTSLVKTLNE----PDPTVRDSSAEALG 201 (242)
T ss_dssp HHHHHHHHTTCCGGGCCHHHHH--HHHHHHHHHHTS----SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHH--HHHHHHHHHhcC----CChHHHHHHHHHHH
Confidence 9999996543 22 122221 345666666643 34456666665553
No 67
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.82 E-value=0.21 Score=52.90 Aligned_cols=216 Identities=11% Similarity=0.051 Sum_probs=123.1
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhh---HHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--chhHhh-
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVN---AAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRT- 215 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~---r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--~~~i~~- 215 (385)
+......+++.|..++.. -..+ ...+ ...+|.|+..+.. ++.+...|+++|.+++.+-.. ...+..
T Consensus 424 ~~~vr~~a~~~l~~l~~~--~~~~~~~~~~~--~~~l~~l~~~l~~----~~~v~~~a~~al~~l~~~~~~~~~~~l~~~ 495 (861)
T 2bpt_A 424 SLQVKETTAWCIGRIADS--VAESIDPQQHL--PGVVQACLIGLQD----HPKVATNCSWTIINLVEQLAEATPSPIYNF 495 (861)
T ss_dssp CHHHHHHHHHHHHHHHHH--HGGGSCTTTTH--HHHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHHSSSSSCGGGGG
T ss_pred cHHHHHHHHHHHHHHHHH--hhhhcCCHHHH--HHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHhcccccchhhHHH
Confidence 555556677777777652 1110 0011 1346777777754 478899999999998764210 011110
Q ss_pred -CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccC---------------ChHHHH
Q 016639 216 -GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQ---------------RNDSIQ 279 (385)
Q Consensus 216 -~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~---------------~~~v~k 279 (385)
..-++.++.+|.+...+..+...++.++..++.........++. ..++.++..|... ...++.
T Consensus 496 ~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~ 574 (861)
T 2bpt_A 496 YPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQS 574 (861)
T ss_dssp HHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHH
Confidence 12356677777753334678888888888877655443333332 4677788877642 114566
Q ss_pred HHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCH-HHHHHHHHHHHHhhcC--hHHHHHHHHcCcH
Q 016639 280 SLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS-PSLISASIALKAVAVN--DEICKSVAENGGI 356 (385)
Q Consensus 280 ~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~-~v~~~a~~aL~~La~~--~e~c~~I~e~GGl 356 (385)
.++.+|..++..-.... ..+. ...++.++..++.. +. .+...++.++..++.. .++..-+.. -+
T Consensus 575 ~~~~~l~~l~~~~~~~~-----~~~~-----~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~--i~ 641 (861)
T 2bpt_A 575 NILTVLAAVIRKSPSSV-----EPVA-----DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASLGKGFEKYLET--FS 641 (861)
T ss_dssp HHHHHHHHHHHHCGGGT-----GGGH-----HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHHGGGGHHHHHH--HH
T ss_pred HHHHHHHHHHHHhhhhh-----HHHH-----HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHHhhhHHHHHHH--HH
Confidence 78888888863211100 0111 13567788888775 33 5778888888888643 233322222 45
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 357 DALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 357 ~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
+.++..+.+ +.. .+...++.++.
T Consensus 642 ~~l~~~l~~--~~~--~vr~~a~~~l~ 664 (861)
T 2bpt_A 642 PYLLKALNQ--VDS--PVSITAVGFIA 664 (861)
T ss_dssp HHHHHHHHC--TTS--HHHHHHHHHHH
T ss_pred HHHHHHhcc--ccH--HHHHHHHHHHH
Confidence 666677742 222 46666666553
No 68
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.71 E-value=0.38 Score=44.35 Aligned_cols=186 Identities=16% Similarity=0.120 Sum_probs=121.7
Q ss_pred HHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHH
Q 016639 123 SLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMAL 202 (385)
Q Consensus 123 al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~ 202 (385)
.+.-|.+++... |......+|..|.++.+..++.- +....+ ..+|.++.++++ .|..+...|+++|..
T Consensus 34 ~l~~L~~LL~dk-------D~~vk~raL~~LeellK~~~~~l-~~~~~e-~~Ld~iI~llk~---~dEkval~A~r~L~~ 101 (265)
T 3b2a_A 34 ALFLILELAGED-------DETTRLRAFVALGEILKRADSDL-RMMVLE-RHLDVFINALSQ---ENEKVTIKALRALGY 101 (265)
T ss_dssp HHHHHHHHTTSS-------CHHHHHHHHHHHHHHHHHSCHHH-HHHHHH-HHHHHHHHTCCS---TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-------chHHHHHHHHHHHHHHHhccccc-cHHHHH-HHHHHHHHHHhc---cchhHHHHHHHHHHH
Confidence 566677777665 78889999999999998511222 333333 469999999977 589999999999999
Q ss_pred HhcCCccc-hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639 203 LVHDVQST-ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (385)
Q Consensus 203 L~~~~~~~-~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A 281 (385)
|+.|.+.. .++.. .+..+..++++ .++-+...++-.+..+-. -... -+++..|..+|.+.+..++..|
T Consensus 102 LLe~vpL~~~~y~K--l~~aL~dlik~--~~~il~~eaae~Lgklkv-~~~~------~~V~~~l~sLl~Skd~~vK~ag 170 (265)
T 3b2a_A 102 LVKDVPMGSKTFLK--AAKTLVSLLES--PDDMMRIETIDVLSKLQP-LEDS------KLVRTYINELVVSPDLYTKVAG 170 (265)
T ss_dssp HHTTCCBCHHHHHH--HHHHHHHHTTS--CCHHHHHHHHHHHHHCCB-SCCC------HHHHHHHHHHHTCSSHHHHHHH
T ss_pred HHcCCCCCHHHHHH--HHHHHHHHhcC--CCchHHHHHHHHhCcCCc-ccch------HHHHHHHHHHHhCCChhHHHHH
Confidence 99987653 33322 23455555553 455566666666665421 1111 1366788999977776788888
Q ss_pred HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh
Q 016639 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND 344 (385)
Q Consensus 282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~ 344 (385)
..++.+++.-.+.. + +. .+++.-+-++|++. |+.+++-++.+|..+..++
T Consensus 171 l~~L~eia~~S~D~-------~----i~-~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 171 FCLFLNMLNSSADS-------G----HL-TLILDEIPSLLQND-NEFIVELALDVLEKALSFP 220 (265)
T ss_dssp HHHHHHHGGGCSSC-------C----CG-GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhhcccCCH-------H----HH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCc
Confidence 98999987422111 1 12 12334455556664 7778888888888887663
No 69
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.68 E-value=0.41 Score=50.59 Aligned_cols=184 Identities=12% Similarity=0.076 Sum_probs=106.3
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--------------chhHhh---CCCcHHHHHHHhcCC-----C
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--------------TETFRT---GGGPKLLVNILIDGN-----E 231 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--------------~~~i~~---~ggi~~Lv~lL~~~~-----~ 231 (385)
.++.++..+.. .+..+...|+..+..++..... .+.+.. ...++.++..|+... +
T Consensus 267 l~~~~~~~~~~---~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~ 343 (861)
T 2bpt_A 267 LYALTIATMKS---PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDD 343 (861)
T ss_dssp HHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCC
T ss_pred HHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 34444444443 4678888888888887653100 000111 234566666676422 2
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhc
Q 016639 232 DPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKI 311 (385)
Q Consensus 232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~ 311 (385)
+..+...++.+|..++....+ .++ ..+++.+...|.+.+..+++.|+++|.+++..-. .+......+
T Consensus 344 ~~~~r~~a~~~L~~l~~~~~~---~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~--------~~~~~~~l~- 410 (861)
T 2bpt_A 344 DWNVSMSAGACLQLFAQNCGN---HIL-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD--------KVQRTYYVH- 410 (861)
T ss_dssp CCHHHHHHHHHHHHHHHHHGG---GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC--------HHHHHHHHH-
T ss_pred cCcHHHHHHHHHHHHHHHccH---hHH-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC--------HHHHHHHHH-
Confidence 235777788888776643221 111 1345566666766666788889999999984321 011111221
Q ss_pred CcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC-------hHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 312 GIARALVHSLHAGLSSPSLISASIALKAVAVN-------DEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 312 Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~-------~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
..++.|+..+... ++.++..++++|.+++.. .++-.. .++.++..+.+ . ..+...+|.+|.+
T Consensus 411 ~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~-----~l~~l~~~l~~---~--~~v~~~a~~al~~ 479 (861)
T 2bpt_A 411 QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQHLPG-----VVQACLIGLQD---H--PKVATNCSWTIIN 479 (861)
T ss_dssp HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTTHHH-----HHHHHHHHHTS---C--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHHHHH-----HHHHHHHHhcc---C--hHHHHHHHHHHHH
Confidence 3678888888663 777888999999988743 112222 24556666643 2 3677888877754
No 70
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=95.53 E-value=0.42 Score=50.57 Aligned_cols=143 Identities=7% Similarity=-0.034 Sum_probs=82.6
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc--chhHhhCCCc
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS--TETFRTGGGP 219 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~--~~~i~~~ggi 219 (385)
+......++..|..+|.. -.++. ..-.-...++.|+..+.... .+..+...|+++|+.++..-.. ........-+
T Consensus 143 ~~~~r~~al~~l~~l~~~-~~~~~-~~~~~~~ll~~l~~~l~~~~-~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il 219 (876)
T 1qgr_A 143 TEHMKESTLEAIGYICQD-IDPEQ-LQDKSNEILTAIIQGMRKEE-PSNNVKLAATNALLNSLEFTKANFDKESERHFIM 219 (876)
T ss_dssp CHHHHHHHHHHHHHHHHH-SCHHH-HGGGHHHHHHHHHHHHSTTC-SCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh-cCHhh-HHhHHHHHHHHHHHhhcCCC-CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 445666778888888763 01211 00001234555566665420 1467888899999987643211 0000001124
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
+.+.+.+. .++.++...++.++..++......-...+...+++.++..+......+...++.++..++
T Consensus 220 ~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~ 287 (876)
T 1qgr_A 220 QVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC 287 (876)
T ss_dssp HHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 44444443 356788889999999887655544334444467888888887666677777776666664
No 71
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=95.25 E-value=0.81 Score=46.20 Aligned_cols=199 Identities=13% Similarity=0.087 Sum_probs=114.3
Q ss_pred HHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCc---cc-hhHhhCCCcHHHHHHHhc--CCCCHHHHHHHHH
Q 016639 168 VATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQ---ST-ETFRTGGGPKLLVNILID--GNEDPEILNSGFA 241 (385)
Q Consensus 168 ~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~---~~-~~i~~~ggi~~Lv~lL~~--~~~~~~v~~~a~~ 241 (385)
+.....++..++.+|+.. ...++....|.-++-|+..++ .+ ..+.+...... .++.. +.++.-.+-.++.
T Consensus 72 l~~~~~~~~~~l~lL~~~--~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~--~l~~~~~~~dd~~~ll~a~~ 147 (480)
T 1ho8_A 72 FKVNGKTLIPLIHLLSTS--DNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLE--QLFDVSLKGDFQTVLISGFN 147 (480)
T ss_dssp --CSSTTHHHHHHHHHSC--CCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHH--HHHHHCSCSSHHHHHHHHHH
T ss_pred hhcCchHHHHHHHHHhhc--ChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccch--HHHHHHhcccchHHHHHHHH
Confidence 334445788899999975 456677777777777777654 22 23333322211 22221 2333334455665
Q ss_pred HHHHHhcCChhhHHHHHhCCChH--HHHHHHccCC-hHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcC--cHHH
Q 016639 242 VVAASATGNEVVKESYMELKIDE--LILEILSRQR-NDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIG--IARA 316 (385)
Q Consensus 242 ~L~~~~~~~e~nr~~iv~~G~i~--~Lv~lL~~~~-~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~G--gi~~ 316 (385)
++..++.....+...+ .+.+. .++..|++.. .+.+--++.+|..|...+..|.. +.+.+ .+++
T Consensus 148 l~~ll~~~~~~~~~~l--~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~----------f~~~~~~~~~~ 215 (480)
T 1ho8_A 148 VVSLLVQNGLHNVKLV--EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDV----------IWLHEKKFMPT 215 (480)
T ss_dssp HHHHHTSTTTCCHHHH--HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHH----------HHTTHHHHHHH
T ss_pred HHHHHhccCCccHhHH--HHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHH----------HHHcccchhHH
Confidence 5554432111111111 11122 4556666532 23444477778888776666653 44432 3667
Q ss_pred HHHHHhcC-------------C---CHHHHHHHHHHHHHhhcChHHHHHHHHcCcH--HHHHHHHHhcCCcCcHHHHHHH
Q 016639 317 LVHSLHAG-------------L---SSPSLISASIALKAVAVNDEICKSVAENGGI--DALLRCIDDSGLQGNKTVARIC 378 (385)
Q Consensus 317 Lv~lL~~~-------------~---~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl--~~Lv~ll~~~~~~~~~~v~k~a 378 (385)
++..++.. + .-.++=+++..++-|+..++++..+...+.. ..|+++++... -+.|.|-+
T Consensus 216 l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~---KEKvvRv~ 292 (480)
T 1ho8_A 216 LFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI---KEKVSRLC 292 (480)
T ss_dssp HHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhc---cchhHHHH
Confidence 76555431 1 1123457788899999999999999887744 45677788743 34899999
Q ss_pred HHHHhcC
Q 016639 379 CSLLSKV 385 (385)
Q Consensus 379 ~~~Lr~l 385 (385)
++.||||
T Consensus 293 la~l~Nl 299 (480)
T 1ho8_A 293 ISIILQC 299 (480)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999996
No 72
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.17 E-value=2.2 Score=46.77 Aligned_cols=163 Identities=13% Similarity=0.100 Sum_probs=98.1
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (385)
++..|+..+... .+..+...+.-+|+.+.-|.+ .+++.++++|... .++-+...++.++.-++.|..++
T Consensus 508 ai~~LL~~~~e~--~~e~vrR~aalgLGll~~g~~--------e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 508 AIHDMFTYSQET--QHGNITRGLAVGLALINYGRQ--------ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCG--------GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHhcc--CcHHHHHHHHHHHHhhhCCCh--------HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCH
Confidence 356677766543 355677777778887766653 4567888888753 45666666666665555554432
Q ss_pred HHHHHhCCChHHHHHHHccC-ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHH
Q 016639 254 KESYMELKIDELILEILSRQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLIS 332 (385)
Q Consensus 254 r~~iv~~G~i~~Lv~lL~~~-~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~ 332 (385)
. +|+.|++.+.++ ++.+++.|..+|..+..+++. .++.+++.|....++.++..
T Consensus 577 -~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e------------------~v~rlv~~L~~~~d~~VR~g 631 (963)
T 4ady_A 577 -S------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT------------------TVPRIVQLLSKSHNAHVRCG 631 (963)
T ss_dssp -H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS------------------SHHHHTTTGGGCSCHHHHHH
T ss_pred -H------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHH------------------HHHHHHHHHHhcCCHHHHHH
Confidence 2 455667766655 447777788777776654431 24566666655447888888
Q ss_pred HHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHH
Q 016639 333 ASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLL 382 (385)
Q Consensus 333 a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~L 382 (385)
++.+|..++..+..-. .++.|..++. +.+..|.+.|..+|
T Consensus 632 AalALGli~aGn~~~~------aid~L~~L~~----D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 632 TAFALGIACAGKGLQS------AIDVLDPLTK----DPVDFVRQAAMIAL 671 (963)
T ss_dssp HHHHHHHHTSSSCCHH------HHHHHHHHHT----CSSHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHH------HHHHHHHHcc----CCCHHHHHHHHHHH
Confidence 8888888876543221 1233333332 23346666665544
No 73
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.13 E-value=0.49 Score=42.41 Aligned_cols=144 Identities=13% Similarity=0.099 Sum_probs=95.5
Q ss_pred HHHHHHHHhh-cCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 123 SLERLKQLDL-NSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 123 al~~L~~~l~-~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
.+..|+..+. .. +......++..|..+++. ......-.-...+|.|+..+.. ....+...|..+|.
T Consensus 57 i~~~L~~~l~kd~-------~~~V~~~a~~~l~~la~~---l~~~~~~~~~~ilp~ll~~l~d---~~~~vr~~a~~aL~ 123 (242)
T 2qk2_A 57 LVSALKKVITKDS-------NVVLVAMAGKCLALLAKG---LAKRFSNYASACVPSLLEKFKE---KKPNVVTALREAID 123 (242)
T ss_dssp HHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHHH---HGGGGHHHHHHHHHHHHHGGGC---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-------CHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHH
Confidence 3555566553 33 677788899999999874 2211111112357777777765 46788888999998
Q ss_pred HHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh---hHHHHHhCCChHHHHHHHccCChHHH
Q 016639 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV---VKESYMELKIDELILEILSRQRNDSI 278 (385)
Q Consensus 202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~---nr~~iv~~G~i~~Lv~lL~~~~~~v~ 278 (385)
++...... + .-++.+...|++ .+..+...++.+|..+...+.. ....+ ...+|.|+.+|.....+++
T Consensus 124 ~~~~~~~~-~-----~ll~~l~~~l~~--~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR 193 (242)
T 2qk2_A 124 AIYASTSL-E-----AQQESIVESLSN--KNPSVKSETALFIARALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVR 193 (242)
T ss_dssp HHHTTSCH-H-----HHHHHHHHHTTC--SCHHHHHHHHHHHHHHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHH
T ss_pred HHHHcCCH-H-----HHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHH
Confidence 88654211 1 124556666664 4789999999999996655421 12222 2578999999987777888
Q ss_pred HHHHHHHHHhc
Q 016639 279 QSLYDAIRVLL 289 (385)
Q Consensus 279 k~A~~aL~~Lt 289 (385)
..|..+|..++
T Consensus 194 ~~A~~~l~~l~ 204 (242)
T 2qk2_A 194 DSSAEALGTLI 204 (242)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88988888775
No 74
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.32 E-value=0.99 Score=40.99 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=104.5
Q ss_pred HHHHHHHHHHhcCCcc--chhHhhCCCcHHHHHHHhcC---------CCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CC
Q 016639 194 DSCLKTMALLVHDVQS--TETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYME-LK 261 (385)
Q Consensus 194 ~~Al~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~-~G 261 (385)
...+..|..-+..++. -+.| ..+|+..|+++|... ..+...+..++++|+.++ .+..-...++. .+
T Consensus 19 ~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~ 96 (233)
T 2f31_A 19 LSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEE 96 (233)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSS
T ss_pred HHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcH
Confidence 3344555544443333 2566 678999999998642 114567888999999876 44545566664 56
Q ss_pred ChHHHHHHHccCChHHHHHHHHHHHHhcCCCc--c-chhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016639 262 IDELILEILSRQRNDSIQSLYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK 338 (385)
Q Consensus 262 ~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd--~-rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~ 338 (385)
++..|+..|.+....+.+.+...|..++.-.+ . ....-.+.++.+..-+..--.++++.|+...+.+.+ .+|..+-
T Consensus 97 ~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~-~~~m~lI 175 (233)
T 2f31_A 97 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALK-VGCLQLI 175 (233)
T ss_dssp HHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHH-HHHHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHH-HHHHHHH
Confidence 88899988987777788888888888875443 1 111123334433333334567788888654344443 3444444
Q ss_pred Hhhc--------ChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHH
Q 016639 339 AVAV--------NDEICKSVAENGGIDALLRCIDDSGLQGNKTVARI 377 (385)
Q Consensus 339 ~La~--------~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~ 377 (385)
|..+ |-..+.++..+|-.+.+ +-|+.. ++.++..|
T Consensus 176 N~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~l~~~---~~~~L~~Q 218 (233)
T 2f31_A 176 NALITPAEELDFRVHIRSELMRLGLHQVL-QELREI---ENEDMKVQ 218 (233)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHHHC---CCHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhcc---CCHHHHHH
Confidence 4332 23455677776555544 667763 33355554
No 75
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=94.00 E-value=0.48 Score=52.89 Aligned_cols=209 Identities=12% Similarity=0.054 Sum_probs=122.5
Q ss_pred HHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHH
Q 016639 124 LERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALL 203 (385)
Q Consensus 124 l~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L 203 (385)
+..|...+.+. +.+....|+..|....+. +...-..-.....++.|+..|.. .+..+...|+.+|+.+
T Consensus 8 l~~lL~~l~s~-------d~~~R~~A~~~L~~~l~~--~~~~~~~~~~~~il~~Ll~~L~d---~~~~vR~~A~~~L~~l 75 (1230)
T 1u6g_C 8 ISNLLEKMTSS-------DKDFRFMATNDLMTELQK--DSIKLDDDSERKVVKMILKLLED---KNGEVQNLAVKCLGPL 75 (1230)
T ss_dssp HHHHHHHTTCS-------SHHHHHHHHHHHHHHTSS--SCCSCCTTHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCC-------CHhHHHHHHHHHHHHHcc--cccCCChhHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence 44455555443 778888888888887764 21100000112357778888764 5788999999999998
Q ss_pred hcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh------HHHHHhCCChHHHHHHHcc-CChH
Q 016639 204 VHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV------KESYMELKIDELILEILSR-QRND 276 (385)
Q Consensus 204 ~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n------r~~iv~~G~i~~Lv~lL~~-~~~~ 276 (385)
..+-.. ..+ ..-++.++..|.+ ++..+...++.+|..++..-... .... -..++|.|+..+.. .+..
T Consensus 76 ~~~~~~--~~~-~~i~~~Ll~~l~d--~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~ 149 (1230)
T 1u6g_C 76 VSKVKE--YQV-ETIVDTLCTNMLS--DKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVS 149 (1230)
T ss_dssp HTTSCH--HHH-HHHHHHHHHHTTC--SSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHH
T ss_pred HHhCCH--HHH-HHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchH
Confidence 765321 111 1123445555543 45567777788887766432221 1111 23578999999984 5567
Q ss_pred HHHHHHHHHHHhcC--CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcC
Q 016639 277 SIQSLYDAIRVLLT--PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENG 354 (385)
Q Consensus 277 v~k~A~~aL~~Lt~--~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~G 354 (385)
++..|+.+|..++. ++... .+ + ...++.|+..|.. .++.++..++.+|..++...+. .+. ..
T Consensus 150 ~~~~al~~l~~~~~~~~~~l~-------~~---~--~~ll~~l~~~L~~-~~~~vR~~a~~al~~l~~~~~~--~~~-~~ 213 (1230)
T 1u6g_C 150 VQLEALDIMADMLSRQGGLLV-------NF---H--PSILTCLLPQLTS-PRLAVRKRTIIALGHLVMSCGN--IVF-VD 213 (1230)
T ss_dssp HHHHHHHHHHHHHHHTCSSCT-------TT---H--HHHHHHHGGGGGC-SSHHHHHHHHHHHHHHTTTC------C-TT
T ss_pred HHHHHHHHHHHHHHHhHhHHH-------HH---H--HHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhcCH--HHH-HH
Confidence 88889999998863 11110 01 1 2245677777765 3677888999999988764211 111 12
Q ss_pred cHHHHHHHHHhc
Q 016639 355 GIDALLRCIDDS 366 (385)
Q Consensus 355 Gl~~Lv~ll~~~ 366 (385)
-++.+++.+.+.
T Consensus 214 ~l~~l~~~L~~~ 225 (1230)
T 1u6g_C 214 LIEHLLSELSKN 225 (1230)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhccC
Confidence 356666666653
No 76
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.99 E-value=0.48 Score=43.38 Aligned_cols=176 Identities=7% Similarity=0.076 Sum_probs=103.5
Q ss_pred CcHhHHHHHHHHHHH-HhcCCccchhHhh-C----CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-hhHH-HHHh
Q 016639 188 GSKRVLDSCLKTMAL-LVHDVQSTETFRT-G----GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE-VVKE-SYME 259 (385)
Q Consensus 188 ~d~~vl~~Al~aLa~-L~~~~~~~~~i~~-~----ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e-~nr~-~iv~ 259 (385)
.+..-...|+..|+. ++.|. +.+.. . .-++.|.+.|.. ..+..++..|+.+|..++.+-. ..-+ .+.
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~---~~i~~~~~~~~~~~~~L~~~l~~-D~n~~v~~~A~~al~~la~~l~~~~f~~~y~- 102 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQT---KKLKSTSQNYSNLLGIYGHIIQK-DANIQAVALAAQSVELICDKLKTPGFSKDYV- 102 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGC---CCBCCTTCCCHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH-
T ss_pred CCHHHHHHHHHHHHHHHHhcC---CccccCcccHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHhcccccccHHHH-
Confidence 366777788888888 87653 23331 1 124455556632 2467888999999999874221 1101 111
Q ss_pred CCChHHHHHHHccCChHHHHHHHHHHHHhcCC-CccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHH
Q 016639 260 LKIDELILEILSRQRNDSIQSLYDAIRVLLTP-DDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALK 338 (385)
Q Consensus 260 ~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~-Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~ 338 (385)
.-++|.|++.+......|+..+..+|.++... +.+-.. .+ + ...++.|+..|++. ++.++..++.+|.
T Consensus 103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-----~~---l--~~ll~~l~~~l~~k-~~~vk~~al~~l~ 171 (249)
T 2qk1_A 103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-----GR---N--EDMLKDILEHMKHK-TPQIRMECTQLFN 171 (249)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-----CT---T--HHHHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-----Cc---H--HHHHHHHHHHHcCC-ChHHHHHHHHHHH
Confidence 23688889998877777777777777777521 000000 00 0 12467888888764 7788889999998
Q ss_pred HhhcChHH--HH--HHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 339 AVAVNDEI--CK--SVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 339 ~La~~~e~--c~--~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
.++....- .+ .-..-.-++.|..+|.+ .+.+|-..|+.+|-
T Consensus 172 ~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D----~~~~VR~aA~~~l~ 216 (249)
T 2qk1_A 172 ASMKEEKDGYSTLQRYLKDEVVPIVIQIVND----TQPAIRTIGFESFA 216 (249)
T ss_dssp HHHHHCCSCSHHHHHHHTTTHHHHHHHHHTC----SSHHHHHHHHHHHH
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHH
Confidence 88754221 11 11112456677777754 34466666665553
No 77
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=93.95 E-value=1 Score=46.91 Aligned_cols=176 Identities=13% Similarity=0.086 Sum_probs=112.8
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHh-cccCCcHhHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICY-KMRCGSKRVLDSCLKTM 200 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~-~~~~~d~~vl~~Al~aL 200 (385)
.++..|..++.+. +.+..--+|..|..++.. ++.. ..+ ..-.+.++.+|+ . .|..+...++..|
T Consensus 329 ~~~~~L~~~L~~~-------~~niry~aL~~l~~l~~~--~~~~-~~~--~~~~~~i~~~L~~d---~d~~Ir~~aL~lL 393 (621)
T 2vgl_A 329 RACNQLGQFLQHR-------ETNLRYLALESMCTLASS--EFSH-EAV--KTHIETVINALKTE---RDVSVRQRAVDLL 393 (621)
T ss_dssp HHHHHHHHHSSCS-------CHHHHHHHHHHHHHHTTC--TTTH-HHH--HTTHHHHHHHHTTC---CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-------CcchHHHHHHHHHHHHhc--cCcH-HHH--HHHHHHHHHHhccC---CCHhHHHHHHHHH
Confidence 6788888887654 677777889999999886 4432 222 234677778887 4 5888999999999
Q ss_pred HHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHH
Q 016639 201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQS 280 (385)
Q Consensus 201 a~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~ 280 (385)
..|++... -..+ +..|.+.|.. .+.+....+..+|..+|.+....... .++.|+++|+.....+..+
T Consensus 394 ~~l~~~~N-v~~I-----v~eL~~yl~~--~d~~~~~~~v~~I~~la~k~~~~~~~-----~v~~Ll~ll~~~~~~v~~e 460 (621)
T 2vgl_A 394 YAMCDRSN-AQQI-----VAEMLSYLET--ADYSIREEIVLKVAILAEKYAVDYTW-----YVDTILNLIRIAGDYVSEE 460 (621)
T ss_dssp HHHCCHHH-HHHH-----HHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHCSSTHH-----HHHHHHHHHHHHGGGSCSH
T ss_pred HHHcChhh-HHHH-----HHHHHHHHHh--cCHHHHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHHHhhcccchHH
Confidence 99876421 0122 2234444443 46788888888888877554433332 4567888887654445556
Q ss_pred HHHHHHHhc-CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHh
Q 016639 281 LYDAIRVLL-TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAV 340 (385)
Q Consensus 281 A~~aL~~Lt-~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~L 340 (385)
+...++.+. .+++.|. + ++..|++.+.... ...++..++|.++..
T Consensus 461 v~~~l~~ii~~~~~~~~----------~-----~~~~l~~~l~~~~~~~~li~~~~wilGEy 507 (621)
T 2vgl_A 461 VWYRVIQIVINRDDVQG----------Y-----AAKTVFEALQAPACHENLVKVGGYILGEF 507 (621)
T ss_dssp HHHHHHHHHGGGCSCHH----------H-----HHHHHHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChhHHH----------H-----HHHHHHHHHcCccchHHHHHHHHHHhcch
Confidence 666677665 3334332 1 2456788887754 345666777887654
No 78
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.45 E-value=1.5 Score=48.94 Aligned_cols=155 Identities=8% Similarity=-0.004 Sum_probs=91.2
Q ss_pred HHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh--CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639 176 ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT--GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (385)
Q Consensus 176 p~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~--~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (385)
|.+...++. .+..+...++.+|+.++.+.. ..+.. ..-++.++.+|.+......++..++..+..++..+...
T Consensus 437 ~~l~~~l~~---~~~~vr~~~~~~L~~l~~~~~--~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~ 511 (1230)
T 1u6g_C 437 KALHKQMKE---KSVKTRQCCFNMLTELVNVLP--GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ 511 (1230)
T ss_dssp HHHHHHTTC---SCHHHHHHHHHHHHHHHHHST--TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHHHHHhcc---CCHHHHHHHHHHHHHHHHHch--hhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH
Confidence 334444554 466777788899998876532 11111 12356667777664434578888888888876433222
Q ss_pred -HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcC--CCccchhhhhc-hhHHHHHHhcCcHHHHHHHHhcCC-CHH
Q 016639 254 -KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT--PDDDQVVASQV-YGYARRFAKIGIARALVHSLHAGL-SSP 328 (385)
Q Consensus 254 -r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~--~Dd~rv~~g~a-~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~ 328 (385)
-..+. ..+++.|+..+......+..+++.++..++. .+. ....+.. ..+. ...++.++..|.... +..
T Consensus 512 ~~~~~l-~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~-~~~~~~~~~~~~-----~~ll~~ll~~l~~~d~~~~ 584 (1230)
T 1u6g_C 512 VFHPHV-QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPL-DQPSSFDATPYI-----KDLFTCTIKRLKAADIDQE 584 (1230)
T ss_dssp GGHHHH-TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCS-SSCCCCCCHHHH-----HHHHHHHHHHHSCSSSCHH
T ss_pred HHHhHH-HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCc-ccccccchHHHH-----HHHHHHHHHHHhccCCCHH
Confidence 12233 4689999999988776777788888887761 110 0000000 0111 124677788885433 567
Q ss_pred HHHHHHHHHHHhhc
Q 016639 329 SLISASIALKAVAV 342 (385)
Q Consensus 329 v~~~a~~aL~~La~ 342 (385)
++..+..++..|+.
T Consensus 585 vr~~a~~~lg~L~~ 598 (1230)
T 1u6g_C 585 VKERAISCMGQIIC 598 (1230)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777777753
No 79
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=93.22 E-value=0.59 Score=42.81 Aligned_cols=150 Identities=8% Similarity=0.088 Sum_probs=94.0
Q ss_pred HHHHHHHHHhh-cCCCCCCcccHHHHHHHHHHHHHHhcCCCC-hhhH-HHHHHcCcHHHHHHHHhcccCCcHhHHHHHHH
Q 016639 122 QSLERLKQLDL-NSKDKFSDEDLNEMMGLFDKLIELCGGNEG-SVNA-AVATKNGGVELVCSICYKMRCGSKRVLDSCLK 198 (385)
Q Consensus 122 ~al~~L~~~l~-~~~~~~~~~~~~~~~~al~~L~~lc~~~~~-~~~r-~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~ 198 (385)
..++.|+..+. .. +......++.+|..++++ -. +.-. ..+. -.+|.|++.++. ....+...+..
T Consensus 60 ~~~~~L~~~l~~D~-------n~~v~~~A~~al~~la~~-l~~~~f~~~y~~--~llp~ll~~l~d---kk~~V~~aa~~ 126 (249)
T 2qk1_A 60 NLLGIYGHIIQKDA-------NIQAVALAAQSVELICDK-LKTPGFSKDYVS--LVFTPLLDRTKE---KKPSVIEAIRK 126 (249)
T ss_dssp HHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHHH-HCTTTSCHHHHH--HHHHHHHHGGGC---CCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-------CHHHHHHHHHHHHHHHHh-cccccccHHHHH--HHHHHHHHHHcC---CCHHHHHHHHH
Confidence 44666666663 32 666778888888888864 01 1111 1111 157788887765 35677777777
Q ss_pred HHHHHhcCCccchhHhhC----CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHH---HHhCCChHHHHHHHc
Q 016639 199 TMALLVHDVQSTETFRTG----GGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKES---YMELKIDELILEILS 271 (385)
Q Consensus 199 aLa~L~~~~~~~~~i~~~----ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~---iv~~G~i~~Lv~lL~ 271 (385)
+|-+++...+ + +... .-++.|+..|++ .+..+...++.+|..++......-.. .+....+|.|..+|.
T Consensus 127 al~~i~~~~~--~-~~~~~~l~~ll~~l~~~l~~--k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~ 201 (249)
T 2qk1_A 127 ALLTICKYYD--P-LASSGRNEDMLKDILEHMKH--KTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVN 201 (249)
T ss_dssp HHHHHHHHSC--T-TCTTCTTHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHT
T ss_pred HHHHHHHHcc--c-cccCCcHHHHHHHHHHHHcC--CChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhc
Confidence 7777665321 1 1111 134455666654 47889999999999877544321012 222578899999998
Q ss_pred cCChHHHHHHHHHHHHhc
Q 016639 272 RQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 272 ~~~~~v~k~A~~aL~~Lt 289 (385)
....+|+..|+.+|..++
T Consensus 202 D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 202 DTQPAIRTIGFESFAILI 219 (249)
T ss_dssp CSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 777788888888888875
No 80
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=92.87 E-value=1 Score=46.81 Aligned_cols=103 Identities=11% Similarity=0.083 Sum_probs=74.0
Q ss_pred cHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh
Q 016639 174 GVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV 253 (385)
Q Consensus 174 aip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n 253 (385)
++..|..+|.+ .++.+.--|+.+|..++...+. ..++ ..-...++..|+. .++..|...++..+..++ ++.|
T Consensus 330 ~~~~L~~~L~~---~~~niry~aL~~l~~l~~~~~~-~~~~-~~~~~~i~~~L~~-d~d~~Ir~~aL~lL~~l~--~~~N 401 (621)
T 2vgl_A 330 ACNQLGQFLQH---RETNLRYLALESMCTLASSEFS-HEAV-KTHIETVINALKT-ERDVSVRQRAVDLLYAMC--DRSN 401 (621)
T ss_dssp HHHHHHHHSSC---SCHHHHHHHHHHHHHHTTCTTT-HHHH-HTTHHHHHHHHTT-CCCHHHHHHHHHHHHHHC--CHHH
T ss_pred HHHHHHHHhcC---CCcchHHHHHHHHHHHHhccCc-HHHH-HHHHHHHHHHhcc-CCCHhHHHHHHHHHHHHc--Chhh
Confidence 56778888765 4788888899999998765422 1233 2245667777772 257889999999999875 6778
Q ss_pred HHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 254 KESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 254 r~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
...|++ -|...+...+.+..++++.+|..++
T Consensus 402 v~~Iv~-----eL~~yl~~~d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 402 AQQIVA-----EMLSYLETADYSIREEIVLKVAILA 432 (621)
T ss_dssp HHHHHH-----HHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 766654 5667776666678888888888886
No 81
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.60 E-value=3.4 Score=40.44 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=103.1
Q ss_pred HHHHHHHHhcCCcc--chhHhhCCCcHHHHHHHhcC---------CCCHHHHHHHHHHHHHHhcCChhhHHHHHh-CCCh
Q 016639 196 CLKTMALLVHDVQS--TETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYME-LKID 263 (385)
Q Consensus 196 Al~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~-~G~i 263 (385)
.+..|..-+..++. -+.|. .+|+..|+++|..- ..+..++..++++|+.++ .+..-...++. ...+
T Consensus 87 ~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~~i 164 (383)
T 3eg5_B 87 CLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGI 164 (383)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSSHH
T ss_pred HHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChHHH
Confidence 44455443333332 25665 78999999999631 224577888999999875 45555566664 5688
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhcCCCc--c-chhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639 264 ELILEILSRQRNDSIQSLYDAIRVLLTPDD--D-QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (385)
Q Consensus 264 ~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd--~-rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~L 340 (385)
..|+.+|.+....+.+.+.-.|..++.-.+ . ....=.+.++.+...+..-..++++.|+...+.+... +|..|-|.
T Consensus 165 ~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~-~~m~lIN~ 243 (383)
T 3eg5_B 165 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKV-GCLQLINA 243 (383)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHH-HHHHHHHH
T ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHH-HHHHHHHH
Confidence 999999988877788888888988886443 1 1111223455555334556788899887743444433 34444333
Q ss_pred hc--------ChHHHHHHHHcCcHHHHHHHHHhc
Q 016639 341 AV--------NDEICKSVAENGGIDALLRCIDDS 366 (385)
Q Consensus 341 a~--------~~e~c~~I~e~GGl~~Lv~ll~~~ 366 (385)
.+ |-..+.++..+|-.+.+ +-|+..
T Consensus 244 li~~~~dl~~R~~lR~ef~~~Gl~~il-~~lr~~ 276 (383)
T 3eg5_B 244 LITPAEELDFRVHIRSELMRLGLHQVL-QELREI 276 (383)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHTTS
T ss_pred HHcCCCCHHHHHHHHHHHHHCChHHHH-HHHhcC
Confidence 22 22455677776666655 557763
No 82
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=92.50 E-value=3.6 Score=40.25 Aligned_cols=177 Identities=11% Similarity=0.030 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHH-HHHHcCcHHHHHHHHhccc--------CCcHhHHHHHHHHHHHHhcCCccchhH
Q 016639 143 LNEMMGLFDKLIELCGGNEGSVNAA-VATKNGGVELVCSICYKMR--------CGSKRVLDSCLKTMALLVHDVQSTETF 213 (385)
Q Consensus 143 ~~~~~~al~~L~~lc~~~~~~~~r~-~~~~~Gaip~Lv~lL~~~~--------~~d~~vl~~Al~aLa~L~~~~~~~~~i 213 (385)
.+.+.+.+..|+...+. .+-.|. .+. ++|+..|+.+|.+.. ..+......++++|.++++...-...+
T Consensus 81 ~~kl~~~L~sL~v~Lrt--~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~v 157 (383)
T 3eg5_B 81 DMHLLSCLESLRVSLTS--HPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM 157 (383)
T ss_dssp HHHHHHHHHHHHHHHHH--SCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred chhHHHHHHHHHHHHhh--CccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHH
Confidence 44566788888888887 555454 455 788999999986431 124466777888888887654333445
Q ss_pred hh-CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-hh-HHHHH----------hCCChHHHHHHHccCChHHHHH
Q 016639 214 RT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNE-VV-KESYM----------ELKIDELILEILSRQRNDSIQS 280 (385)
Q Consensus 214 ~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e-~n-r~~iv----------~~G~i~~Lv~lL~~~~~~v~k~ 280 (385)
++ ..++..|...|.+ ....+...++-.|..+|.-.+ .+ -..|. +..-..+++..|+.....-.+-
T Consensus 158 l~~~~~i~~l~~~L~s--~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~ 235 (383)
T 3eg5_B 158 LETEEGILLLVRAMDP--AVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKV 235 (383)
T ss_dssp HTCSSHHHHHHHTCCT--TSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHH
T ss_pred HcChHHHHHHHHHhCC--CchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHH
Confidence 54 4567878777753 577888889999998887654 33 22222 2245677888888754444455
Q ss_pred HHHHHHHhc--CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639 281 LYDAIRVLL--TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329 (385)
Q Consensus 281 A~~aL~~Lt--~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v 329 (385)
+|..|.|.. ..+|.... -|.+.=...-|+..+++-|+...++.+
T Consensus 236 ~~m~lIN~li~~~~dl~~R-----~~lR~ef~~~Gl~~il~~lr~~~~~~L 281 (383)
T 3eg5_B 236 GCLQLINALITPAEELDFR-----VHIRSELMRLGLHQVLQELREIENEDM 281 (383)
T ss_dssp HHHHHHHHHHTTCCCHHHH-----HHHHHHHHHTTHHHHHHHHTTSCCHHH
T ss_pred HHHHHHHHHHcCCCCHHHH-----HHHHHHHHHCChHHHHHHHhcCCChhH
Confidence 677777653 22332211 112221234566677777887655543
No 83
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=92.24 E-value=7.7 Score=37.86 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhh-CCCcHHHHH
Q 016639 146 MMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRT-GGGPKLLVN 224 (385)
Q Consensus 146 ~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~-~ggi~~Lv~ 224 (385)
+..++.-|-.+.. +.+...-+++.+|+..+....... +.++....++.|-..++... -.... ..-+|++++
T Consensus 260 vtR~FDLL~LLmH---dSnAIDGFVk~DGv~~I~TvinYp---N~~l~RaG~KLLLQVSDaks--L~~t~L~e~LPFi~~ 331 (619)
T 3c2g_A 260 IIRTFDLLGLLLH---DSDAIDGFVRSDGVGAITTVVQYP---NNDLIRAGCKLLLQVSDAKA--LAKTPLENILPFLLR 331 (619)
T ss_dssp HHHHHHHHHHHCC---SHHHHHHHHHTTHHHHHHHHTTSS---CHHHHHHHHHHHHHHTTCGG--GGTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHhc---ccccccceeecccceeEEEEeecC---CcHHHHhhhheeeeecchHH--HhhccccccchHHHH
Confidence 3344555555554 355566789999999999998874 66777777877776544211 11112 345899999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-------HHHHHHHHHHHH----h-----
Q 016639 225 ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN-------DSIQSLYDAIRV----L----- 288 (385)
Q Consensus 225 lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~-------~v~k~A~~aL~~----L----- 288 (385)
.++.+ ++.+++-.+-..|+++.+---..|..-+..|+|+.|-..+..... ...+-||..++| |
T Consensus 332 ~i~~h-~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLM 410 (619)
T 3c2g_A 332 LIEIH-PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLM 410 (619)
T ss_dssp HHHHC-CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HhccC-CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhhee
Confidence 99875 578999999999999887666677777789999999998866543 233335555444 3
Q ss_pred ---cCCCccchhhhhch-hHHHHHHhcCcHHHHHHHHhcC
Q 016639 289 ---LTPDDDQVVASQVY-GYARRFAKIGIARALVHSLHAG 324 (385)
Q Consensus 289 ---t~~Dd~rv~~g~a~-~~a~~I~e~Ggi~~Lv~lL~~~ 324 (385)
-+.+..|.+.|.-. .+.+.+.|...++.|+..|.-.
T Consensus 411 mWIPm~NGqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e 450 (619)
T 3c2g_A 411 MWIPTPNGETKTAGPNEKQQVCKFIEIDILKKLMSCLSCE 450 (619)
T ss_dssp GGSCCTTSCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred EEEecCCCccccCChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 25555666666532 3456666767777777777653
No 84
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.14 E-value=5.1 Score=36.16 Aligned_cols=178 Identities=10% Similarity=0.019 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccC--------CcHhHHHHHHHHHHHHhcCCccchhHh
Q 016639 143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRC--------GSKRVLDSCLKTMALLVHDVQSTETFR 214 (385)
Q Consensus 143 ~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~--------~d~~vl~~Al~aLa~L~~~~~~~~~i~ 214 (385)
.+.+.+.+..|+...+. ...++-..+ ..||+..|+.+|..... .+......++++|.++++.......++
T Consensus 15 ~~~~~~~L~~L~v~Lrt-~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl 92 (233)
T 2f31_A 15 DMHLLSCLESLRVSLNN-NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTML 92 (233)
T ss_dssp HHHHHHHHHHHHHHHHH-SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHhc-CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 34566778888877776 234444455 57899999999875421 134567778888888876543334555
Q ss_pred h-CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh-h-HHHHH----------hCCChHHHHHHHccCChHHHHHH
Q 016639 215 T-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV-V-KESYM----------ELKIDELILEILSRQRNDSIQSL 281 (385)
Q Consensus 215 ~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~-n-r~~iv----------~~G~i~~Lv~lL~~~~~~v~k~A 281 (385)
+ .+++..+...|. +.+..+...++-.|..+|.-.+. . -..|. +..-..++++.|+.....-.+-+
T Consensus 93 ~~~~~i~~l~~~L~--s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~ 170 (233)
T 2f31_A 93 ETEEGILLLVRAMD--PAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVG 170 (233)
T ss_dssp TSSSHHHHHHTTCC--TTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHH
T ss_pred cCcHHHHHHHHHhC--CCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHH
Confidence 4 456777777764 45778888888888888875441 2 22222 22355667777775444344556
Q ss_pred HHHHHHhc--CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639 282 YDAIRVLL--TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329 (385)
Q Consensus 282 ~~aL~~Lt--~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v 329 (385)
|-.+.|.. ..+|.+.. -|.|.=...-|+..+++-|+...++.+
T Consensus 171 ~m~lIN~li~~~~dl~~R-----~~lR~ef~~~Gl~~il~~l~~~~~~~L 215 (233)
T 2f31_A 171 CLQLINALITPAEELDFR-----VHIRSELMRLGLHQVLQELREIENEDM 215 (233)
T ss_dssp HHHHHHHHHTTCCCHHHH-----HHHHHHHHHTTHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHCCCCCHHHH-----HHHHHHHHHCChHHHHHHHhccCCHHH
Confidence 66666653 22332211 111111234577777788887655544
No 85
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.13 E-value=11 Score=41.37 Aligned_cols=136 Identities=11% Similarity=0.023 Sum_probs=89.2
Q ss_pred CcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChh
Q 016639 173 GGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEV 252 (385)
Q Consensus 173 Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~ 252 (385)
.+++.|+++|... .++.+...+.-+++--..|..+ ...|+.|+..+... .+..+...|.-.|..++.++++
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn------~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGN------NSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCC------HHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCS
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCC------HHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHH
Confidence 4788999998864 4666766666666644444322 12345556665553 4567888888888888777652
Q ss_pred hHHHHHhCCChHHHHHHHcc-CChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHH
Q 016639 253 VKESYMELKIDELILEILSR-QRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLI 331 (385)
Q Consensus 253 nr~~iv~~G~i~~Lv~lL~~-~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~ 331 (385)
.++.+++.|.. ++..+...|+.+|..+....... .++..|..++.. .+..|..
T Consensus 612 ---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~----------------~aid~L~~L~~D-~d~~Vrq 665 (963)
T 4ady_A 612 ---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ----------------SAIDVLDPLTKD-PVDFVRQ 665 (963)
T ss_dssp ---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH----------------HHHHHHHHHHTC-SSHHHHH
T ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH----------------HHHHHHHHHccC-CCHHHHH
Confidence 45667776554 55578888999999886433211 125556665544 3778989
Q ss_pred HHHHHHHHhhcC
Q 016639 332 SASIALKAVAVN 343 (385)
Q Consensus 332 ~a~~aL~~La~~ 343 (385)
.+..+|+.+...
T Consensus 666 ~Ai~ALG~Ig~g 677 (963)
T 4ady_A 666 AAMIALSMILIQ 677 (963)
T ss_dssp HHHHHHHHHSTT
T ss_pred HHHHHHHHHhcC
Confidence 999999988653
No 86
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=91.50 E-value=5.3 Score=39.07 Aligned_cols=167 Identities=13% Similarity=0.124 Sum_probs=99.4
Q ss_pred HHHHHHHHhcCCcc--chhHhhCCCcHHHHHHHhcC---------CCCHHHHHHHHHHHHHHhcCChhhHHHHH-hCCCh
Q 016639 196 CLKTMALLVHDVQS--TETFRTGGGPKLLVNILIDG---------NEDPEILNSGFAVVAASATGNEVVKESYM-ELKID 263 (385)
Q Consensus 196 Al~aLa~L~~~~~~--~~~i~~~ggi~~Lv~lL~~~---------~~~~~v~~~a~~~L~~~~~~~e~nr~~iv-~~G~i 263 (385)
.+..|..-+..++. -+.|. .+|+..|+.+|... ..+...+..++++|+.++ .+..-...++ ..+++
T Consensus 25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i 102 (386)
T 2bnx_A 25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGI 102 (386)
T ss_dssp HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHH
T ss_pred HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHH
Confidence 34444443443332 24553 68999999888642 114567888999999876 4444455565 45788
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHhcCCCcc---chhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 016639 264 ELILEILSRQRNDSIQSLYDAIRVLLTPDDD---QVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAV 340 (385)
Q Consensus 264 ~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~---rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~L 340 (385)
..|+..|.+....+.+.+.-.|..++.-.+. ....=.+.++....-+..--.+||+.|+...+.+.. .+|..+-|.
T Consensus 103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~-~a~m~lIN~ 181 (386)
T 2bnx_A 103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALK-VGCLQLINA 181 (386)
T ss_dssp HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHH-HHHHHHHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHH-HHHHHHHHH
Confidence 8999999877777777888888888764431 111112334433333344567788888764444443 344444443
Q ss_pred hc--------ChHHHHHHHHcCcHHHHHHHHHhc
Q 016639 341 AV--------NDEICKSVAENGGIDALLRCIDDS 366 (385)
Q Consensus 341 a~--------~~e~c~~I~e~GGl~~Lv~ll~~~ 366 (385)
.+ |-..+.++..+|-.+.+ +-|+..
T Consensus 182 lv~~~~dl~~R~~LR~Ef~~~GL~~il-~~Lr~~ 214 (386)
T 2bnx_A 182 LITPAEELDFRVHIRSELMRLGLHQVL-QELREI 214 (386)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTHHHHH-HHHTTC
T ss_pred HHCCCCCHHHHHHHHHHHHHCChHHHH-HHHhcc
Confidence 32 23466777776655554 667763
No 87
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=91.27 E-value=6.7 Score=36.37 Aligned_cols=159 Identities=16% Similarity=0.111 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHH---HHHHHHHHHHHHhcCCh-hhHHHHHhCCChHHHH
Q 016639 192 VLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPE---ILNSGFAVVAASATGNE-VVKESYMELKIDELIL 267 (385)
Q Consensus 192 vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~---v~~~a~~~L~~~~~~~e-~nr~~iv~~G~i~~Lv 267 (385)
-.++|+.-|-.++.+++.+..|+++.-+-.|.-+|+....... +.-.++.+++.+...++ +...-+++..++|..+
T Consensus 72 RVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL 151 (268)
T 2fv2_A 72 RVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL 151 (268)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence 3566666666677777778999999999899999987554332 45567778887664333 2333445789999999
Q ss_pred HHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHH
Q 016639 268 EILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEIC 347 (385)
Q Consensus 268 ~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c 347 (385)
..|..|+.-...-|.-.+..+-.+|.--.-+-++++.-..+. .++..+|.-|....++.+++.+.+.-.+|+-+...|
T Consensus 152 rime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~--~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar 229 (268)
T 2fv2_A 152 RIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVA--MILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAR 229 (268)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHH--HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHH
Confidence 999999964444466666666665543322223334333333 356666776666557789999999999999888888
Q ss_pred HHHHH
Q 016639 348 KSVAE 352 (385)
Q Consensus 348 ~~I~e 352 (385)
..+-.
T Consensus 230 ~aL~~ 234 (268)
T 2fv2_A 230 EALRQ 234 (268)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 88
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=90.10 E-value=12 Score=36.06 Aligned_cols=102 Identities=7% Similarity=0.004 Sum_probs=71.4
Q ss_pred HHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhH
Q 016639 175 VELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVK 254 (385)
Q Consensus 175 ip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr 254 (385)
+..|..=|.+ +++-+...|+++|+++.... +++ .-.+.+-+.|.+ .++-|.+.|+.+..++...+++.
T Consensus 106 ~Nsl~kDl~~---~N~~iR~lALRtL~~I~~~~-----m~~-~l~~~lk~~L~d--~~pyVRk~A~l~~~kL~~~~pe~- 173 (355)
T 3tjz_B 106 TSSLTKDMTG---KEDSYRGPAVRALCQITDST-----MLQ-AIERYMKQAIVD--KVPSVSSSALVSSLHLLKCSFDV- 173 (355)
T ss_dssp HHHHHHHHHS---SCHHHHHHHHHHHHHHCCTT-----THH-HHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTTCHHH-
T ss_pred HHHHHhhcCC---CcHhHHHHHHHHHhcCCCHH-----HHH-HHHHHHHHHcCC--CCHHHHHHHHHHHHHHhccCHHH-
Confidence 4455555555 47788999999999987642 111 122334555553 57889999999998888666543
Q ss_pred HHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCC
Q 016639 255 ESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPD 292 (385)
Q Consensus 255 ~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~D 292 (385)
++ +.++.+-+++...+.-|+-+|..+|..+...|
T Consensus 174 ---v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 174 ---VK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp ---HH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred ---HH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 33 68899999998877778878888888886544
No 89
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=89.06 E-value=16 Score=35.59 Aligned_cols=177 Identities=11% Similarity=0.036 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHH-HHHHcCcHHHHHHHHhcccC--------CcHhHHHHHHHHHHHHhcCCccchhH
Q 016639 143 LNEMMGLFDKLIELCGGNEGSVNAA-VATKNGGVELVCSICYKMRC--------GSKRVLDSCLKTMALLVHDVQSTETF 213 (385)
Q Consensus 143 ~~~~~~al~~L~~lc~~~~~~~~r~-~~~~~Gaip~Lv~lL~~~~~--------~d~~vl~~Al~aLa~L~~~~~~~~~i 213 (385)
.+.+...+..|+...+. .+-.|. -+. .+|+..|+..|..... .+......++++|.++++.......+
T Consensus 19 ~~~~~~~L~~L~v~Lrt--~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~v 95 (386)
T 2bnx_A 19 DMHLLSCLESLRVSLNN--NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTM 95 (386)
T ss_dssp HHHHHHHHHHHHHHHHH--SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHH
T ss_pred hHHHHHHHHHHhHHHhc--CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34456677788777776 444444 454 6889999998865421 14466777888888887654333445
Q ss_pred hh-CCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhh--HHHHH----------hCCChHHHHHHHccCChHHHHH
Q 016639 214 RT-GGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVV--KESYM----------ELKIDELILEILSRQRNDSIQS 280 (385)
Q Consensus 214 ~~-~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~n--r~~iv----------~~G~i~~Lv~lL~~~~~~v~k~ 280 (385)
+. ..++..+...|. +.+..+...++-.|..+|.-.+.+ -..|. +..-..+||+.|+.+...-.+-
T Consensus 96 l~~~~~i~~l~~sL~--s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~ 173 (386)
T 2bnx_A 96 LETEEGILLLVRAMD--PAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKV 173 (386)
T ss_dssp HHSSSHHHHHHHTCC--TTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHH
T ss_pred HcCcHHHHHHHHHhC--CCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHH
Confidence 44 456777777775 456788888888888888755421 22221 2235667888887655444555
Q ss_pred HHHHHHHhc--CCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHH
Q 016639 281 LYDAIRVLL--TPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPS 329 (385)
Q Consensus 281 A~~aL~~Lt--~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v 329 (385)
+|-.+.|.. ..+|.+.. -|.|.=...-|+..+++-|+...++.+
T Consensus 174 a~m~lIN~lv~~~~dl~~R-----~~LR~Ef~~~GL~~il~~Lr~~~~~~L 219 (386)
T 2bnx_A 174 GCLQLINALITPAEELDFR-----VHIRSELMRLGLHQVLQELREIENEDM 219 (386)
T ss_dssp HHHHHHHHHHTTCSCHHHH-----HHHHHHHHHTTHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHCCCCCHHHH-----HHHHHHHHHCChHHHHHHHhccCChhH
Confidence 777777753 22332211 112222234677788888888656544
No 90
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=87.19 E-value=22 Score=38.24 Aligned_cols=213 Identities=11% Similarity=0.056 Sum_probs=110.3
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhccc--CCcHhHHHHHHHHHHHHhcCCccchhHhhCCCc
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMR--CGSKRVLDSCLKTMALLVHDVQSTETFRTGGGP 219 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~--~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi 219 (385)
+......++..|..++.+ ..... ...++.++.++.... +.++.+...++++|+.++..-...+..+. ..+
T Consensus 477 ~w~~~eaal~~l~~iae~--~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl 548 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEH--FGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAI 548 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC-------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHH
T ss_pred cHHHHHHHHHHHHHHHhh--cChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHH
Confidence 345677788888887765 22211 245666777654332 23678899999999988753211111111 123
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHHHccC--ChHHHHHHHHHHHHhcC--CCc
Q 016639 220 KLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME--LKIDELILEILSRQ--RNDSIQSLYDAIRVLLT--PDD 293 (385)
Q Consensus 220 ~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~--~G~i~~Lv~lL~~~--~~~v~k~A~~aL~~Lt~--~Dd 293 (385)
+.++..| + +.+...|++++..+|. ..+..+.- ...+..|..++.++ +...+..+..+|..++. +.+
T Consensus 549 ~~l~~~l-~----~~v~~~A~~al~~l~~---~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~ 620 (971)
T 2x1g_F 549 NLLVRGL-N----SSMSAQATLGLKELCR---DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPE 620 (971)
T ss_dssp HHHHHHH-H----SSCHHHHHHHHHHHHH---HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHh-C----hHHHHHHHHHHHHHHH---HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHH
Confidence 4455555 2 5688899999999984 34444431 24556666777763 33555556666666642 112
Q ss_pred cchhhhhchhHHHHHHhcCcHHHHHHHHhc----CC-CHHHHHHHHHHHHHhh-------cC----------hHHHHHHH
Q 016639 294 DQVVASQVYGYARRFAKIGIARALVHSLHA----GL-SSPSLISASIALKAVA-------VN----------DEICKSVA 351 (385)
Q Consensus 294 ~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~----~~-~~~v~~~a~~aL~~La-------~~----------~e~c~~I~ 351 (385)
.+.+ ++. ..+++++..+.. .. ++.....+...+..|+ .. .+.+..+.
T Consensus 621 ~~~~---------~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 689 (971)
T 2x1g_F 621 EIPK---------YLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM 689 (971)
T ss_dssp HHHH---------HHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH
T ss_pred HHHH---------HHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH
Confidence 1111 121 134555554432 11 2212222222333222 11 11112222
Q ss_pred HcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 352 ENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 352 e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
...++.+..++..+.++. .+.+.+|.++++
T Consensus 690 -~~i~~~l~~~l~~~~~~~--~v~e~~~~~~~~ 719 (971)
T 2x1g_F 690 -QRTMPIFKRIAEMWVEEI--DVLEAACSAMKH 719 (971)
T ss_dssp -HTTHHHHHHHHHHTTTCH--HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhccccH--HHHHHHHHHHHH
Confidence 246677777777654333 899999999875
No 91
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=86.38 E-value=6.1 Score=38.59 Aligned_cols=120 Identities=12% Similarity=0.181 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHc
Q 016639 192 VLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILS 271 (385)
Q Consensus 192 vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~ 271 (385)
+...+...|..|.++.+.-+-++..+|+..+..+.. ..+.++.+++|..|..+...-.-+ .+--...+|-++..++
T Consensus 259 VvtR~FDLL~LLmHdSnAIDGFVk~DGv~~I~Tvin--YpN~~l~RaG~KLLLQVSDaksL~--~t~L~e~LPFi~~~i~ 334 (619)
T 3c2g_A 259 VIIRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQ--YPNNDLIRAGCKLLLQVSDAKALA--KTPLENILPFLLRLIE 334 (619)
T ss_dssp HHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHTTCGGGG--TSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccceeecccceeEEEEee--cCCcHHHHhhhheeeeecchHHHh--hccccccchHHHHHhc
Confidence 455566667767776544467889999999999886 468999999999998754211000 0001246677788887
Q ss_pred cC-ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH-hcCcHHHHHHHHhcCC
Q 016639 272 RQ-RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA-KIGIARALVHSLHAGL 325 (385)
Q Consensus 272 ~~-~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~-e~Ggi~~Lv~lL~~~~ 325 (385)
.| .++++-...+.|+|..... .+.+.++ ..|+|..|...+...+
T Consensus 335 ~h~eDdvvYSGTGFLSNVVAHK----------q~VKelAI~~nAI~LLh~~I~ky~ 380 (619)
T 3c2g_A 335 IHPDDEVIYSGTGFLSNVVAHK----------QHVKDIAIRSNAIFLLHTIISKYP 380 (619)
T ss_dssp HCCCHHHHHHHHHHHHHHSTTC----------HHHHHHHHHTTHHHHHHHHHHTSC
T ss_pred cCCCcceEEecchHHHHHHhcc----------cchHHHHhccCcHHHHHHHHhhCC
Confidence 76 4588889999999987421 3466777 6899999999886653
No 92
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=85.15 E-value=35 Score=36.46 Aligned_cols=133 Identities=15% Similarity=0.145 Sum_probs=79.1
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHH
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKL 221 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~ 221 (385)
+......+++.|..++.+ -... ...-++.++..+.....+++.+...++++++..+..-...+.++ ...++.
T Consensus 462 ~w~~~eaal~al~~i~~~--~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl~~ 533 (963)
T 2x19_B 462 SWQHTEALLYGFQSIAET--IDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI-NSVLPL 533 (963)
T ss_dssp CHHHHHHHHHHHHHHTTS--CCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH-TTTHHH
T ss_pred chHHHHHHHHHHHHHHhh--cCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHH
Confidence 556677778888887765 2210 12345566666544333467789999999998765311112222 255677
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHHHccC--ChHHHHHHHHHHHHhc
Q 016639 222 LVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME--LKIDELILEILSRQ--RNDSIQSLYDAIRVLL 289 (385)
Q Consensus 222 Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~--~G~i~~Lv~lL~~~--~~~v~k~A~~aL~~Lt 289 (385)
++..|. ++.+...||+++..+|.. .+..+.- ...+..|..++... ....+..+..++..++
T Consensus 534 l~~~l~----~~~V~~~A~~al~~l~~~---~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~ 598 (963)
T 2x19_B 534 VLHALG----NPELSVSSVSTLKKICRE---CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLL 598 (963)
T ss_dssp HHHHTT----CGGGHHHHHHHHHHHHHH---TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHhC----CchHHHHHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHH
Confidence 777764 278899999999999843 3332321 12334445555543 3356666777777775
No 93
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=83.61 E-value=13 Score=33.68 Aligned_cols=136 Identities=9% Similarity=0.049 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHHHHHhcCCCChh--hHH--HHHHcCcHHHHHHH-HhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhC
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSV--NAA--VATKNGGVELVCSI-CYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTG 216 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~--~r~--~~~~~Gaip~Lv~l-L~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ 216 (385)
+...+..++..|..++... ... .+. ...-...+|.|++- |.+ ....+...|+.++..++........+
T Consensus 68 N~~v~~~al~~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~lveK~l~~---~k~~~~~~a~~~l~~~~~~~~~~~~~--- 140 (278)
T 4ffb_C 68 NVVAQEQAIVALNSLIDAF-ASSSLKNAHNITLISTWTPLLVEKGLTS---SRATTKTQSMSCILSLCGLDTSITQS--- 140 (278)
T ss_dssp SHHHHHHHHHHHHHHHTTC-C---CCHHHHHHHHHHHHHHHHHHTSSC---CCHHHHHHHHHHHHHHHHTSSSSHHH---
T ss_pred hHHHHHHHHHHHHHHHHHh-hhhhcccchhHHHHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHhcCcHHHH---
Confidence 7788888999998887641 111 111 11222356666653 333 35667777777777665322111111
Q ss_pred CCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC--h-hhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhc
Q 016639 217 GGPKLLVNILIDGNEDPEILNSGFAVVAASATGN--E-VVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 217 ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~--e-~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt 289 (385)
++.++..|. ..++.+...++.+|..+.... . .+-..++ ..+++.+..+|.+.+..|+.+|..++..|-
T Consensus 141 --~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 141 --VELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHGDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp --HHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 233333343 358899999999988764321 1 0111111 124456677777777778888887777663
No 94
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=82.45 E-value=58 Score=35.07 Aligned_cols=100 Identities=10% Similarity=0.001 Sum_probs=61.8
Q ss_pred CcHhHHHHHHHHHHHHhcCCccchhHhhC-----CCcHH----HHHHHhcCC-CCHHHHHHHHHHHHHHhcCChhhHHHH
Q 016639 188 GSKRVLDSCLKTMALLVHDVQSTETFRTG-----GGPKL----LVNILIDGN-EDPEILNSGFAVVAASATGNEVVKESY 257 (385)
Q Consensus 188 ~d~~vl~~Al~aLa~L~~~~~~~~~i~~~-----ggi~~----Lv~lL~~~~-~~~~v~~~a~~~L~~~~~~~e~nr~~i 257 (385)
.+......|+.++++++.+...+..-... .-.+. ++..|.+.. ..+-+...+||++...+..- ..+.
T Consensus 417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~--~~~~- 493 (960)
T 1wa5_C 417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL--TKAQ- 493 (960)
T ss_dssp -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS--CHHH-
T ss_pred hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC--CHHH-
Confidence 35567888999999987642111100100 11222 233344421 26788999999999876431 2222
Q ss_pred HhCCChHHHHHHHccCChHHHHHHHHHHHHhcCC
Q 016639 258 MELKIDELILEILSRQRNDSIQSLYDAIRVLLTP 291 (385)
Q Consensus 258 v~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~ 291 (385)
-..+++.++..|...+..|+..||++|.+++..
T Consensus 494 -l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~ 526 (960)
T 1wa5_C 494 -LIELMPILATFLQTDEYVVYTYAAITIEKILTI 526 (960)
T ss_dssp -HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence 234677888888776667888999999999863
No 95
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=82.26 E-value=33 Score=32.20 Aligned_cols=140 Identities=10% Similarity=0.050 Sum_probs=80.9
Q ss_pred CHHHHHHHHHHHHHHhcCChhhHHHHHhC--CChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHH
Q 016639 232 DPEILNSGFAVVAASATGNEVVKESYMEL--KIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFA 309 (385)
Q Consensus 232 ~~~v~~~a~~~L~~~~~~~e~nr~~iv~~--G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~ 309 (385)
.+..+--++++++|+. .++.-++.++.. .+++.+..++...+..++-.++..+.|++.--- +. ...+....
T Consensus 161 ~p~n~ml~lR~l~NlF-~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~-~~---~~~~~~~~-- 233 (304)
T 3ebb_A 161 KPANQLLALRTFCNCF-VGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFH-KD---HNIEGKAQ-- 233 (304)
T ss_dssp CHHHHHHHHHHHHHGG-GSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHH-HS---CCHHHHHH--
T ss_pred ChHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh-hc---CCchHHHH--
Confidence 4556778899999965 677788877753 234444444444444677778888888873100 00 00111111
Q ss_pred hcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 310 KIGIARALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 310 e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
++..+..+++...+.+.+-.++.+|.+|...+.....+.+.=|+...+.-..+.+. + .-+++||..|=+
T Consensus 234 ---ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~-~--~kv~~~~~~~~~ 302 (304)
T 3ebb_A 234 ---CLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSE-P--AKVSECCRFILN 302 (304)
T ss_dssp ---HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCS-S--HHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCC-c--hhHHHHHHHHHH
Confidence 34555566655447778788888999998765434444433344433344444333 3 457788877654
No 96
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=80.04 E-value=57 Score=34.80 Aligned_cols=137 Identities=10% Similarity=0.026 Sum_probs=83.4
Q ss_pred CcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHH
Q 016639 188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN-EDPEILNSGFAVVAASATGNEVVKESYMELKIDELI 266 (385)
Q Consensus 188 ~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~-~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~L 266 (385)
.+......++.++++++.+-... ...-++.++..|-.-. +++.+...++|++...+.--..+. .+. ..+++.|
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl~~l 534 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVLPLV 534 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHHHHH
Confidence 45677888999999998764321 1122344555543322 467788999999987653212222 233 4788999
Q ss_pred HHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhc
Q 016639 267 LEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGL-SSPSLISASIALKAVAV 342 (385)
Q Consensus 267 v~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~ 342 (385)
+..|.. ..|+..||++|..++.+ .+..+. .+. ...+..|..++.... +...+..+..++..++.
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~---p~~-----~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRE--CKYDLP---PYA-----ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHH--TGGGCT---TTH-----HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHhCC--chHHHHHHHHHHHHHHH--HHHHHH---hhH-----HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 998854 56888999999999832 221110 111 123455566666533 45566677777777764
No 97
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=75.94 E-value=8.2 Score=37.36 Aligned_cols=184 Identities=9% Similarity=-0.032 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHH
Q 016639 120 LIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKT 199 (385)
Q Consensus 120 v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~a 199 (385)
++-++..|+..+... ++-....|++.|+.+... +--. ...+.+-+.|.+ .++.+...|+-+
T Consensus 102 ~iLv~Nsl~kDl~~~-------N~~iR~lALRtL~~I~~~----~m~~-----~l~~~lk~~L~d---~~pyVRk~A~l~ 162 (355)
T 3tjz_B 102 VIIVTSSLTKDMTGK-------EDSYRGPAVRALCQITDS----TMLQ-----AIERYMKQAIVD---KVPSVSSSALVS 162 (355)
T ss_dssp GGGGHHHHHHHHHSS-------CHHHHHHHHHHHHHHCCT----TTHH-----HHHHHHHHHHTC---SSHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCC-------cHhHHHHHHHHHhcCCCH----HHHH-----HHHHHHHHHcCC---CCHHHHHHHHHH
Confidence 335556666665543 444455556666665442 1000 123444445544 255555555555
Q ss_pred HHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHH----------------------
Q 016639 200 MALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESY---------------------- 257 (385)
Q Consensus 200 La~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~i---------------------- 257 (385)
...|.... +++++ +.++.+-+++.+ .++-++..|+.++..++..+...-..+
T Consensus 163 ~~kL~~~~---pe~v~-~~~~~l~~ll~d--~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l 236 (355)
T 3tjz_B 163 SLHLLKCS---FDVVK-RWVNEAQEAASS--DNIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVA 236 (355)
T ss_dssp HHHHTTTC---HHHHH-TTHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHH
T ss_pred HHHHhccC---HHHHH-HHHHHHHHHhcC--CCccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHH
Confidence 55555443 34443 344444444432 344455555555554443211000000
Q ss_pred ----------HhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCH
Q 016639 258 ----------MELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSS 327 (385)
Q Consensus 258 ----------v~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~ 327 (385)
.....++.|...|++.+..|+=+|+.+|..|...+. + .+ .-++.+|..+|.+. ++
T Consensus 237 ~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~-~-----------~~--~~a~~~L~~fLss~-d~ 301 (355)
T 3tjz_B 237 SRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSA-K-----------EL--APAVSVLQLFCSSP-KA 301 (355)
T ss_dssp TCC-----------------CCCCCSSHHHHHHHHHHHTC-------------------------CCCTHHHHHHSS-SS
T ss_pred HHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCH-H-----------HH--HHHHHHHHHHHcCC-Cc
Confidence 012344455555665566788888888888754111 0 11 12345666677664 44
Q ss_pred HHHHHHHHHHHHhhcC
Q 016639 328 PSLISASIALKAVAVN 343 (385)
Q Consensus 328 ~v~~~a~~aL~~La~~ 343 (385)
.++=-++..|..++..
T Consensus 302 niryvaLr~L~~l~~~ 317 (355)
T 3tjz_B 302 ALRYAAVRTLNKVAMK 317 (355)
T ss_dssp SSHHHHHHCC------
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4555556666666554
No 98
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=74.55 E-value=1.1e+02 Score=33.70 Aligned_cols=237 Identities=9% Similarity=0.036 Sum_probs=132.3
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCC-CChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGN-EGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~-~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aL 200 (385)
..++.|+..+.+. .+. ..|+..+..+|+.. ..+..-..+. +.+|.++.++.. .+..+...|-.++
T Consensus 54 ~~~~~~~~~~~~k--------~~~-~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~d---k~~~v~~aa~~~~ 119 (986)
T 2iw3_A 54 HFFGELAKGIKDK--------KTA-ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGN---KDKEIQSVASETL 119 (986)
T ss_dssp HHHHHHHHHHTSH--------HHH-HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTC---SSHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcc--------CCH-HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcC---CchHHHHHHHHHH
Confidence 5677788877653 122 78899999999651 0111111222 567777777654 3566776666666
Q ss_pred HHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHh--CCChHHHHHHHccCChHHH
Q 016639 201 ALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYME--LKIDELILEILSRQRNDSI 278 (385)
Q Consensus 201 a~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~--~G~i~~Lv~lL~~~~~~v~ 278 (385)
.++...-. +.-+ ...+|.|+..|... ..=.....++.++..++.... ..+.. -.+||.+.++|.....+|.
T Consensus 120 ~~~~~~~~--~~a~-~~~~~~~~~~~~~~-~kw~~k~~~l~~~~~~~~~~~---~~~~~~~~~~~p~~~~~~~d~k~~v~ 192 (986)
T 2iw3_A 120 ISIVNAVN--PVAI-KALLPHLTNAIVET-NKWQEKIAILAAFSAMVDAAK---DQVALRMPELIPVLSETMWDTKKEVK 192 (986)
T ss_dssp HHHHHHSC--GGGH-HHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHSH---HHHHHHHHHHHHHHHHHTTCSSHHHH
T ss_pred HHHHHhCC--HHHH-HHHHHHHHHHhccc-cchHHHHHHHHHHHHHHHHhH---HHHHHhccchhcchHhhcccCcHHHH
Confidence 66654321 2222 55678888888653 234456688888888774332 22322 3588888999988887898
Q ss_pred HHHHHHHHHhc---CCCccchhhhhchhHHHHHHhcCc-------------------------HHHHHHHHhcCCCHHHH
Q 016639 279 QSLYDAIRVLL---TPDDDQVVASQVYGYARRFAKIGI-------------------------ARALVHSLHAGLSSPSL 330 (385)
Q Consensus 279 k~A~~aL~~Lt---~~Dd~rv~~g~a~~~a~~I~e~Gg-------------------------i~~Lv~lL~~~~~~~v~ 330 (385)
+.|..++..++ .|+|+.-- -+.-.+.|++-.- +|.|.+-|... ...+.
T Consensus 193 ~~~~~~~~~~~~~~~n~d~~~~---~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~-~~~~~ 268 (986)
T 2iw3_A 193 AAATAAMTKATETVDNKDIERF---IPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNER-ETGIK 268 (986)
T ss_dssp HHHHHHHHHHGGGCCCTTTGGG---HHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSS-SHHHH
T ss_pred HHHHHHHHHHHhcCCCcchhhh---HHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccC-cchhh
Confidence 88888888776 45554320 0011111111111 23333334332 33455
Q ss_pred HHHHHHHHHhhc--Ch-HHHHHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHhc
Q 016639 331 ISASIALKAVAV--ND-EICKSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLSK 384 (385)
Q Consensus 331 ~~a~~aL~~La~--~~-e~c~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr~ 384 (385)
+.++-+..||+. ++ .-...+.- -=++-|........+.+.-+++..|+..|++
T Consensus 269 r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 269 RKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred eeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 566666666652 33 33333321 2334444444455555556778888777753
No 99
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=74.27 E-value=67 Score=35.26 Aligned_cols=187 Identities=10% Similarity=0.065 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHH
Q 016639 121 IQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTM 200 (385)
Q Consensus 121 ~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aL 200 (385)
...++.|...+..+ +.++...+...+..+..+ +...+.. ..+.+..|...+.. ++--+.|+.++
T Consensus 13 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~~-----k~~~~~a~~~~ 76 (986)
T 2iw3_A 13 IKVLEELFQKLSVA-------TADNRHEIASEVASFLNG--NIIEHDV--PEHFFGELAKGIKD-----KKTAANAMQAV 76 (986)
T ss_dssp HHHHHHHHHHHTTC-------CTTTHHHHHHHHHHHHTS--SCSSSSC--CHHHHHHHHHHHTS-----HHHHHHHHHHH
T ss_pred HHHHHHHHhhcccc-------chhHHHHHHHHHHHHHhc--ccccccc--chhHHHHHHHHHhc-----cCCHHHHHHHH
Confidence 34555565555432 345677888888888775 2221111 12456666666653 22228889999
Q ss_pred HHHhcCCccc----hhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh-
Q 016639 201 ALLVHDVQST----ETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN- 275 (385)
Q Consensus 201 a~L~~~~~~~----~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~- 275 (385)
..|+...... +-++ +-++.++..+.+ ....|..+|-.++..++..-..+ ++ ..++|.|+..|.+...
T Consensus 77 ~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~d--k~~~v~~aa~~~~~~~~~~~~~~--a~--~~~~~~~~~~~~~~~kw 148 (986)
T 2iw3_A 77 AHIANQSNLSPSVEPYIV--QLVPAICTNAGN--KDKEIQSVASETLISIVNAVNPV--AI--KALLPHLTNAIVETNKW 148 (986)
T ss_dssp HHHTCTTTCCTTTHHHHH--TTHHHHHHHTTC--SSHHHHHHHHHHHHHHHHHSCGG--GH--HHHHHHHHHHHHHCCCH
T ss_pred HHHHHhcCCCCCcccchH--HHHHHHHHHhcC--CchHHHHHHHHHHHHHHHhCCHH--HH--HHHHHHHHHHhccccch
Confidence 9988443221 2222 335555555543 34566655554554443322222 22 4578999999977643
Q ss_pred HHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhc
Q 016639 276 DSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAV 342 (385)
Q Consensus 276 ~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~ 342 (385)
.....|+.+|..|+..- +.. -+..+ -..||.+.+.|... .++|...+..++..++.
T Consensus 149 ~~k~~~l~~~~~~~~~~--~~~------~~~~~--~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~ 204 (986)
T 2iw3_A 149 QEKIAILAAFSAMVDAA--KDQ------VALRM--PELIPVLSETMWDT-KKEVKAAATAAMTKATE 204 (986)
T ss_dssp HHHHHHHHHHHHHHHHS--HHH------HHHHH--HHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHh--HHH------HHHhc--cchhcchHhhcccC-cHHHHHHHHHHHHHHHh
Confidence 55556888888886311 110 11122 24788888888774 56677777777766653
No 100
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=72.26 E-value=29 Score=38.19 Aligned_cols=137 Identities=9% Similarity=0.135 Sum_probs=77.8
Q ss_pred cHHHHHHHHHHHHHHhcCCCChh-hHHHHHHcCcHHHHHHHHhcccCCcHh--HHHHHHHHHHHHhcCCccchhHhhCCC
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSV-NAAVATKNGGVELVCSICYKMRCGSKR--VLDSCLKTMALLVHDVQSTETFRTGGG 218 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~-~r~~~~~~Gaip~Lv~lL~~~~~~d~~--vl~~Al~aLa~L~~~~~~~~~i~~~gg 218 (385)
+-.....+++++..++.+ -.++ ....+. .++|.|+.++......|.+ +...++++|+..+.--...+.+
T Consensus 466 ~W~~~EA~~~a~gaIa~~-~~~~~e~~~l~--~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~----- 537 (1023)
T 4hat_C 466 SWHNINTLSWAIGSISGT-MSEDTEKRFVV--TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF----- 537 (1023)
T ss_dssp CHHHHHHHHHHHHHTTTS-SCHHHHHHHHH--HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH-----
T ss_pred CHHHHHHHHHHHHHHHcC-CCchhHHHHHH--HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH-----
Confidence 567788899999998875 2222 222222 3688888888642211333 3345678888754321111222
Q ss_pred cHHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCChhhHHHHHh------CCChHHHH----HHHccCChHHHHHHHHHHH
Q 016639 219 PKLLVNILID--GNEDPEILNSGFAVVAASATGNEVVKESYME------LKIDELIL----EILSRQRNDSIQSLYDAIR 286 (385)
Q Consensus 219 i~~Lv~lL~~--~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~------~G~i~~Lv----~lL~~~~~~v~k~A~~aL~ 286 (385)
++.++..|-. +.+++.++..||+++.++|. +++..++. ..-++.|+ .++..........++.++.
T Consensus 538 L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~ 614 (1023)
T 4hat_C 538 LRTVILKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACG 614 (1023)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444444432 22457899999999999984 56666653 11234443 3333344445555666666
Q ss_pred Hhc
Q 016639 287 VLL 289 (385)
Q Consensus 287 ~Lt 289 (385)
.+.
T Consensus 615 ~vi 617 (1023)
T 4hat_C 615 III 617 (1023)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 101
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=68.22 E-value=32 Score=36.99 Aligned_cols=133 Identities=11% Similarity=0.113 Sum_probs=77.4
Q ss_pred cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCC---CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHH
Q 016639 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGN---EDPEILNSGFAVVAASATGNEVVKESYMELKIDEL 265 (385)
Q Consensus 189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~---~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~ 265 (385)
+....+.|+.+++++..+-.... ...++.++.+|..-. .++.+...+||++...+.--..+.+ +. ..+++.
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~-~l-~~vl~~ 550 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA-YI-PPAINL 550 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH-HH-HHHHHH
Confidence 55678889999999877643211 234555666553322 2678899999999876532111111 11 135566
Q ss_pred HHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh--cCcHHHHHHHHhcCC-CHHHHHHHHHHHHHhhc
Q 016639 266 ILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLHAGL-SSPSLISASIALKAVAV 342 (385)
Q Consensus 266 Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e--~Ggi~~Lv~lL~~~~-~~~v~~~a~~aL~~La~ 342 (385)
|+..| . ..|+..||++|..++.+ .+. .+.. ...+..|..++.... +...+..+..++..++.
T Consensus 551 l~~~l-~--~~v~~~A~~al~~l~~~--~~~----------~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 551 LVRGL-N--SSMSAQATLGLKELCRD--CQL----------QLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHH-H--SSCHHHHHHHHHHHHHH--CHH----------HHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHh-C--hHHHHHHHHHHHHHHHH--HHH----------hccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 67777 2 46888999999999832 221 1221 235566777777643 45566666666666654
No 102
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=67.47 E-value=16 Score=40.29 Aligned_cols=96 Identities=7% Similarity=-0.034 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC--h---HHHHHHHHHHHHhcCCCccchhhhhchhHH
Q 016639 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR--N---DSIQSLYDAIRVLLTPDDDQVVASQVYGYA 305 (385)
Q Consensus 231 ~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~--~---~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a 305 (385)
.+=....+++++++.++-+-.+....-.=..+++.|+.++.... + .+...+||+|...+.
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~--------------- 529 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPR--------------- 529 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHH---------------
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHH---------------
Confidence 35567889999999877554333222222357788888886421 1 233467899987652
Q ss_pred HHHHh-cCcHHHHHHHHhcC---CCHHHHHHHHHHHHHhhc
Q 016639 306 RRFAK-IGIARALVHSLHAG---LSSPSLISASIALKAVAV 342 (385)
Q Consensus 306 ~~I~e-~Ggi~~Lv~lL~~~---~~~~v~~~a~~aL~~La~ 342 (385)
.+.. ..-+++++..|-.+ .++.+...+|+++.+++.
T Consensus 530 -wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~ 569 (1023)
T 4hat_C 530 -FLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1023)
T ss_dssp -HHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred -HHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 2221 12355555555432 147899999999999985
No 103
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=65.28 E-value=86 Score=28.93 Aligned_cols=100 Identities=12% Similarity=0.227 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCCh----HHHH-HHHHHHHHhcCCCccchhhhhchhHHHHH
Q 016639 234 EILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRN----DSIQ-SLYDAIRVLLTPDDDQVVASQVYGYARRF 308 (385)
Q Consensus 234 ~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~----~v~k-~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I 308 (385)
.-++.++..+.-+| .|++-|..|++++..--|.-.|...+. +-.+ .+.+++..|.-.||-. -...+
T Consensus 71 nRVcnaLaLlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~e--------Vi~fL 141 (268)
T 2fv2_A 71 NRVCNALALLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQE--------VINFL 141 (268)
T ss_dssp HHHHHHHHHHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHH--------HHHHH
T ss_pred hHHHHHHHHHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHH--------HHHHH
Confidence 34566667777666 588999999999988777777766543 3333 4788899998777643 34566
Q ss_pred HhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639 309 AKIGIARALVHSLHAGLSSPSLISASIALKAVAVN 343 (385)
Q Consensus 309 ~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~ 343 (385)
.+.+.||..++.|..++ .-.+.-+...+.++-.+
T Consensus 142 L~tEiiplCLrime~Gs-elSKtvAtfIlqKIL~d 175 (268)
T 2fv2_A 142 LTTEIIPLCLRIMESGS-ELSKTVATFILQKILLD 175 (268)
T ss_dssp HHTTHHHHHHHHHHHSC-HHHHHHHHHHHHHHHHS
T ss_pred HhhhHHHHHHHHHhhcc-HHHHHHHHHHHHHHhcc
Confidence 78889999999999984 32222334445554433
No 104
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=62.71 E-value=53 Score=36.22 Aligned_cols=107 Identities=10% Similarity=0.029 Sum_probs=57.5
Q ss_pred HHHHHHHHhccc-CCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCCh
Q 016639 175 VELVCSICYKMR-CGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDG--NEDPEILNSGFAVVAASATGNE 251 (385)
Q Consensus 175 ip~Lv~lL~~~~-~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~--~~~~~v~~~a~~~L~~~~~~~e 251 (385)
+..+..++++.. ..++.+...|+-++++|+..-...........++.+.+.|... ..+.+-....+++|.|+ +++
T Consensus 393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~--g~p 470 (1056)
T 1lsh_A 393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA--GQP 470 (1056)
T ss_dssp HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCG
T ss_pred HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhcc--CCh
Confidence 444555665421 1244556667778877764310000000112245555555321 12455566778888886 565
Q ss_pred hhHHHHHhCCChHHHHHHHcc-----C--ChHHHHHHHHHHHHhcCCC
Q 016639 252 VVKESYMELKIDELILEILSR-----Q--RNDSIQSLYDAIRVLLTPD 292 (385)
Q Consensus 252 ~nr~~iv~~G~i~~Lv~lL~~-----~--~~~v~k~A~~aL~~Lt~~D 292 (385)
. .++.|..+|.. . ...++..|+++|+.++..+
T Consensus 471 ~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~ 509 (1056)
T 1lsh_A 471 N---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD 509 (1056)
T ss_dssp G---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC
T ss_pred h---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc
Confidence 3 45566666642 1 2267888999999998543
No 105
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=59.68 E-value=96 Score=27.62 Aligned_cols=192 Identities=17% Similarity=0.144 Sum_probs=101.3
Q ss_pred hhhhHHHHH-HHHHhhHHhcCCChhHHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCc
Q 016639 62 RTISQEAFD-EVVKENMEDLGMEPTEALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSD 140 (385)
Q Consensus 62 ~~isqetfd-~~v~eni~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~ 140 (385)
+.|-+.+|| +++++=|.-+|=+.=-..++|+ .=+++|++..|. .+-..++.|...+..++ .
T Consensus 22 eii~~a~~d~~~l~~lI~~LDDDlwtV~kNAl-------~vi~~i~~~~~e-------l~epl~~kL~vm~~ksE----a 83 (253)
T 2db0_A 22 KILIMAKYDESVLKKLIELLDDDLWTVVKNAI-------SIIMVIAKTRED-------LYEPMLKKLFSLLKKSE----A 83 (253)
T ss_dssp HHHHHHHHCHHHHHHHHHHTTCSCHHHHHHHH-------HHHHHHHTTCGG-------GHHHHHHHHHHHHHHCC----S
T ss_pred HHHHHHHhhHHHHHHHHHHhccHHHHHHHhHH-------HHHHHHHHHhHH-------HHHHHHHHHHHHHhhcc----c
Confidence 556777777 5777788888888877888888 446677766543 23345666666554331 1
Q ss_pred ccH-HHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcc---------------cCCcHhHHHHHHHHHHHHh
Q 016639 141 EDL-NEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKM---------------RCGSKRVLDSCLKTMALLV 204 (385)
Q Consensus 141 ~~~-~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~---------------~~~d~~vl~~Al~aLa~L~ 204 (385)
-+. .++..++..+... .|+--. +.+|.|..=.+-. .-.++.++....+-+.+|+
T Consensus 84 IpltqeIa~a~G~la~i-----~Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi~sml 153 (253)
T 2db0_A 84 IPLTQEIAKAFGQMAKE-----KPELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDFMSML 153 (253)
T ss_dssp HHHHHHHHHHHHHHHHH-----CHHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred CchHHHHHHHHhHHHHh-----CHHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHHHHHh
Confidence 111 2233333322222 232110 1122221111110 0013444555555556665
Q ss_pred cCCccch-----hHhhCC----------CcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHH
Q 016639 205 HDVQSTE-----TFRTGG----------GPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEI 269 (385)
Q Consensus 205 ~~~~~~~-----~i~~~g----------gi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~l 269 (385)
++.+..+ .|+++= =+|.|..+|.+ .+.-+...+.-+|.+++..++.-|..|. ..++=
T Consensus 154 tskd~~Dkl~aLnFi~alGen~~~yv~PfLprL~aLL~D--~deiVRaSaVEtL~~lA~~npklRkii~------~kl~e 225 (253)
T 2db0_A 154 SSKNREDKLTALNFIEAMGENSFKYVNPFLPRIINLLHD--GDEIVRASAVEALVHLATLNDKLRKVVI------KRLEE 225 (253)
T ss_dssp SCSSHHHHHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGC--SSHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHH
T ss_pred cCCChHHHHHHHHHHHHHhccCccccCcchHHHHHHHcC--cchhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHH
Confidence 5433211 122221 25666777764 4556677888899999999988765443 33455
Q ss_pred HccCChHHHHHHHHHHHHhc
Q 016639 270 LSRQRNDSIQSLYDAIRVLL 289 (385)
Q Consensus 270 L~~~~~~v~k~A~~aL~~Lt 289 (385)
+...+..+++..--+|..|+
T Consensus 226 ~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 226 LNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp CCCSCHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHH
Confidence 55555556665555555554
No 106
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=39.02 E-value=35 Score=25.17 Aligned_cols=39 Identities=26% Similarity=0.523 Sum_probs=30.7
Q ss_pred HHHHHHHhh--------HHhcCCChhHHHHHHHHHHHHcCCCCCCCccC
Q 016639 68 AFDEVVKEN--------MEDLGMEPTEALQDAIQTLSLQGVDLSGIVKC 108 (385)
Q Consensus 68 tfd~~v~en--------i~~f~m~~~eAl~~aI~qfe~QGvdLsni~~~ 108 (385)
.|-..++.+ -.+|+|.-++++ +-|++++.+| .|++++-|
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i-~RI~~Le~~g-~ltGViDD 57 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQMGLRTQDAI-NRIQDLLTEG-TLTGVIDD 57 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHHHCSCHHHHH-HHHHHHHHHS-SSCEEECT
T ss_pred HHHHHHHHcCeeeHHHHHHHhCCChHHHH-HHHHHHHHCC-CeEEEEeC
Confidence 345555555 568999999997 8999999999 58888766
No 107
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=38.04 E-value=3.1e+02 Score=29.19 Aligned_cols=135 Identities=12% Similarity=0.017 Sum_probs=73.3
Q ss_pred HHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcC------
Q 016639 176 ELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATG------ 249 (385)
Q Consensus 176 p~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~------ 249 (385)
..|+++|......|.... |-..|..+-.. .|....|++++.+...+..+...|+-.+++....
T Consensus 5 ~~l~~~L~~~~spd~~~r--Ae~~L~~~~~~---------p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~ 73 (960)
T 1wa5_C 5 ETVAKFLAESVIASTAKT--SERNLRQLETQ---------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN 73 (960)
T ss_dssp HHHHHHHHHTTSGGGHHH--HHHHHHHHHTS---------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred HHHHHHHHHhcCCCHHHH--HHHHHHHhhcC---------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence 445566654433344333 55556554221 2345567777766555677888888888876532
Q ss_pred -----ChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh--cCcHHHHHHHHh
Q 016639 250 -----NEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLH 322 (385)
Q Consensus 250 -----~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e--~Ggi~~Lv~lL~ 322 (385)
.++.|..| +. .|+..|......++..+|.+|+.++..|- -+ -+.++.|+.+++
T Consensus 74 ~~~~l~~~~k~~i-k~----~ll~~l~~~~~~ir~~l~~~ia~ia~~d~---------------p~~Wp~ll~~L~~~l~ 133 (960)
T 1wa5_C 74 GNHLLPANNVELI-KK----EIVPLMISLPNNLQVQIGEAISSIADSDF---------------PDRWPTLLSDLASRLS 133 (960)
T ss_dssp SCBSSCHHHHHHH-HH----HHHHHHHHSCHHHHHHHHHHHHHHHHHHS---------------TTTCTTHHHHHHTTCC
T ss_pred cCCCCCHHHHHHH-HH----HHHHHHHhCCHHHHHHHHHHHHHHHHhhC---------------ccchhHHHHHHHHHhC
Confidence 33444333 32 34444444445566678888887763211 11 245667776665
Q ss_pred cCCCHHHHHHHHHHHHHhhc
Q 016639 323 AGLSSPSLISASIALKAVAV 342 (385)
Q Consensus 323 ~~~~~~v~~~a~~aL~~La~ 342 (385)
+. +...+..++.+|..+..
T Consensus 134 s~-~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 134 ND-DMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp SS-CTTHHHHHHHHHHHHHG
T ss_pred CC-CHHHHHHHHHHHHHHHH
Confidence 53 33344555666665543
No 108
>2gdt_A Leader protein; P65 homolog; NSP1 (EC 3.4.22.-); beta-barrel, alpha-beta, replicase, structural genomics, PSI-2, protein structure initiative; NMR {Sars coronavirus} SCOP: d.346.1.1 PDB: 2hsx_A
Probab=37.74 E-value=9.5 Score=30.20 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=22.8
Q ss_pred HHhh-HHhcCCChhHHHHHHHHHHHH---cCCCC
Q 016639 73 VKEN-MEDLGMEPTEALQDAIQTLSL---QGVDL 102 (385)
Q Consensus 73 v~en-i~~f~m~~~eAl~~aI~qfe~---QGvdL 102 (385)
|+|| +.-|+|++|||+++|-+++.. |=|++
T Consensus 12 ~~~~~V~gw~~~~EeALe~ar~~L~~g~~~lV~~ 45 (116)
T 2gdt_A 12 VRDVLVRGFGDSVEEALSEAREHLKNGTCGLVEL 45 (116)
T ss_dssp TTTCSCCCSCSSHHHHHHHHHHHHHHTCEEEECC
T ss_pred EcceeccCCCCCHHHHHHHHHHHhhcCCceEEEe
Confidence 4455 667999999999999999844 44553
No 109
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=34.70 E-value=42 Score=22.26 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=28.9
Q ss_pred hhhhhhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHH
Q 016639 59 KTVRTISQEAFDEVVKENMEDLGMEPTEALQDAIQTL 95 (385)
Q Consensus 59 ~~~~~isqetfd~~v~eni~~f~m~~~eAl~~aI~qf 95 (385)
...-+|+.+. -+-+.+-....+++..+.+++||.+|
T Consensus 11 ~i~vrl~~el-~~~l~~~a~~~g~s~s~~ir~ai~~~ 46 (55)
T 2k9i_A 11 KLGVYIPQEW-HDRLMEIAKEKNLTLSDVCRLAIKEY 46 (55)
T ss_dssp EEEEEECHHH-HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred eEEEEcCHHH-HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3445688888 45567778888999999999999997
No 110
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=33.12 E-value=55 Score=35.65 Aligned_cols=98 Identities=7% Similarity=-0.010 Sum_probs=55.2
Q ss_pred CcHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhc---C-C---CCHHHHHHHHHHHHHHhcCChhhHHHHHhC
Q 016639 188 GSKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILID---G-N---EDPEILNSGFAVVAASATGNEVVKESYMEL 260 (385)
Q Consensus 188 ~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~---~-~---~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~ 260 (385)
.+....+.|++++++++.+-.. . .+..-++.++..|-. . . +.+-+...+||++...+.--..+.+-+ .
T Consensus 465 ~~W~~~eaal~algsia~~~~~-~--~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~ 539 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSE-D--TEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--R 539 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCH-H--HHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--H
T ss_pred CCHHHHHHHHHHHHHHhcccCc-h--hhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--H
Confidence 3567888999999998754211 1 011113333333321 1 1 112233357888875442111121211 2
Q ss_pred CChHHHHHHHccCChHHHHHHHHHHHHhcC
Q 016639 261 KIDELILEILSRQRNDSIQSLYDAIRVLLT 290 (385)
Q Consensus 261 G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~ 290 (385)
.+++.|+..|...+..|+..||++|.+++.
T Consensus 540 ~vl~~ll~~l~~~~~~V~~~A~~al~~l~~ 569 (1049)
T 3m1i_C 540 TVILKLFEFMHETHEGVQDMACDTFIKIVQ 569 (1049)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 456677777876666899999999999985
No 111
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=32.07 E-value=3.1e+02 Score=25.39 Aligned_cols=145 Identities=11% Similarity=-0.024 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHH-HHHhccc-CCcHhHHHHHHHHHHHHhcCCccchhHhhCCCcH
Q 016639 143 LNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVC-SICYKMR-CGSKRVLDSCLKTMALLVHDVQSTETFRTGGGPK 220 (385)
Q Consensus 143 ~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv-~lL~~~~-~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~ 220 (385)
.+.+--.++-||.... ++.....+...+.-..++ .++.... ...+..+.-++++++|+......++-+.+. .+
T Consensus 116 ~~~~fPvLDLlRl~~l---~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~--~~ 190 (304)
T 3ebb_A 116 EDIVFPALDILRLSIK---HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQ--RE 190 (304)
T ss_dssp TTTCHHHHHHHHHHTT---SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHT--HH
T ss_pred HHhHHHHHHHHHHHHc---CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHH--HH
Confidence 4566677888887766 455444444433334455 3433321 123445667899999987765444444442 24
Q ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCC-hHHHHHHHHHHHHhcCCC
Q 016639 221 LLVNILIDG--NEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQR-NDSIQSLYDAIRVLLTPD 292 (385)
Q Consensus 221 ~Lv~lL~~~--~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~-~~v~k~A~~aL~~Lt~~D 292 (385)
.+++.+... .++..++.+++.++.|.+...-..+..=...-++..+..+++... .+++--+.-+|.+|...|
T Consensus 191 ~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~ 265 (304)
T 3ebb_A 191 SLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTLISDD 265 (304)
T ss_dssp HHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCC
Confidence 444444422 246677777777777766532111100001114445555565433 366666777777777543
No 112
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=30.22 E-value=2.2e+02 Score=30.85 Aligned_cols=101 Identities=6% Similarity=-0.056 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHcc--C--ChHHHH-HHHHHHHHhcCCCccchhhhhchhHH
Q 016639 231 EDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSR--Q--RNDSIQ-SLYDAIRVLLTPDDDQVVASQVYGYA 305 (385)
Q Consensus 231 ~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~--~--~~~v~k-~A~~aL~~Lt~~Dd~rv~~g~a~~~a 305 (385)
.+-.....++++++.++.+.......-.-..+++.|+.+... + ...+++ .+||++...+.- +. .|.
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~------~~---~~~ 535 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRF------LK---AHW 535 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHH------HH---HCH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHH------HH---hHH
Confidence 345567788888887654322211111111234444443321 1 123444 588999877620 00 011
Q ss_pred HHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcC
Q 016639 306 RRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVN 343 (385)
Q Consensus 306 ~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~ 343 (385)
..+. ..++.|++.|.. .++.|+..+|.++.+++..
T Consensus 536 ~~l~--~vl~~ll~~l~~-~~~~V~~~A~~al~~l~~~ 570 (1049)
T 3m1i_C 536 NFLR--TVILKLFEFMHE-THEGVQDMACDTFIKIVQK 570 (1049)
T ss_dssp HHHH--HHHHHHHHHTTS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHhcC-CCHHHHHHHHHHHHHHHHH
Confidence 1121 245666666654 2678999999999999863
No 113
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=28.03 E-value=3.1e+02 Score=24.17 Aligned_cols=179 Identities=8% Similarity=0.024 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHHHHhcCCCChhhH--H-HHHHcCcHH-HHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc---chhHh
Q 016639 142 DLNEMMGLFDKLIELCGGNEGSVNA--A-VATKNGGVE-LVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS---TETFR 214 (385)
Q Consensus 142 ~~~~~~~al~~L~~lc~~~~~~~~r--~-~~~~~Gaip-~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~---~~~i~ 214 (385)
+-..-.+++.+|..++.. .+... . .+..-+.++ .+-..+.. .+..++..++.+|..++..-.. .....
T Consensus 22 ~WK~R~eale~l~~~~~~--~~~~~~~~~~~~~~~~~~~~lkk~l~D---sN~~v~~~al~~l~~~~~~~~~~~~~~~~~ 96 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRN--SVGDISRDDNIQIYWRDPTLFAQYITD---SNVVAQEQAIVALNSLIDAFASSSLKNAHN 96 (278)
T ss_dssp SHHHHHHHHHHHHHHHHT--C----------CCTTSCTHHHHHHTTC---SSHHHHHHHHHHHHHHHTTCC---CCHHHH
T ss_pred cHHHHHHHHHHHHHHHhh--CcccccchhHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhhhhcccchh
Confidence 445666777777777654 21110 0 111122233 33334433 4678888899999887753211 01111
Q ss_pred h---CCCcHHHHH-HHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcC
Q 016639 215 T---GGGPKLLVN-ILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLT 290 (385)
Q Consensus 215 ~---~ggi~~Lv~-lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~ 290 (385)
. ...++.|++ .|. .....+...+..++..++..... ... +++.++..+.+.+..++.+++..|..+..
T Consensus 97 ~~~~~~~l~~lveK~l~--~~k~~~~~~a~~~l~~~~~~~~~-~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 97 ITLISTWTPLLVEKGLT--SSRATTKTQSMSCILSLCGLDTS-ITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHTSSS-SHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhcCc-HHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 1 111233332 122 34556666666666554422111 011 23455666666676777777777776642
Q ss_pred CCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 291 PDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 291 ~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
.||...-+.+.... .+++.+..+|.. .|+.|+..+..++..+.
T Consensus 169 ------~fg~~~~~~k~~l~-~i~~~l~k~l~d-~~~~VR~aA~~l~~~ly 211 (278)
T 4ffb_C 169 ------AFGLTNVNVQTFLP-ELLKHVPQLAGH-GDRNVRSQTMNLIVEIY 211 (278)
T ss_dssp ------HHTTTTCCHHHHHH-HHGGGHHHHHTC-SSHHHHHHHHHHHHHHH
T ss_pred ------HhCCCcCCchhHHH-HHHHHHHHHHhC-CcHHHHHHHHHHHHHHH
Confidence 12221111111111 123455556655 47888887777776664
No 114
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=25.85 E-value=4.3e+02 Score=25.08 Aligned_cols=195 Identities=10% Similarity=0.071 Sum_probs=125.5
Q ss_pred HHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCcc-c-hh--HhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 016639 170 TKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQS-T-ET--FRTGGGPKLLVNILIDGNEDPEILNSGFAVVAA 245 (385)
Q Consensus 170 ~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~-~-~~--i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~ 245 (385)
.+.+.+..|+..|... +-+..-.+....+++...+.. + +. .+.. -.+.+.-+++. .+++++.-.+=..|+
T Consensus 75 ~~~dll~~Li~~l~~L---~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~-~peil~~L~~g-Ye~~diAl~~G~mLR- 148 (341)
T 1upk_A 75 YNSGLLSTLVADLQLI---DFEGKKDVAQIFNNILRRQIGTRTPTVEYICT-QQNILFMLLKG-YESPEIALNCGIMLR- 148 (341)
T ss_dssp HHHSHHHHHHHTGGGS---CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT-CTHHHHHHHHG-GGSTTTHHHHHHHHH-
T ss_pred HHhCHHHHHHHhcccC---CchhhccHHHHHHHHHhcccCCCCchhHHHHc-CHHHHHHHHHh-hccchhHhHHHHHHH-
Confidence 3457788888888764 556666666777777764332 1 22 3333 34555555554 456666555434444
Q ss_pred HhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHh--cCcHHHHHHHHhc
Q 016639 246 SATGNEVVKESYMELKIDELILEILSRQRNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAK--IGIARALVHSLHA 323 (385)
Q Consensus 246 ~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e--~Ggi~~Lv~lL~~ 323 (385)
-|.+||..-.-|...+.+-.+.+.++..+.++...|..+++-|-+.-. .. -+..+.. .-....+-.+|.+
T Consensus 149 ecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk--~l------vaefL~~nyd~Ff~~y~~Ll~S 220 (341)
T 1upk_A 149 ECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK--LL------SAEFLEQHYDRFFSEYEKLLHS 220 (341)
T ss_dssp HHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH--HH------HHHHHHHTHHHHHHHHHHHTTC
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH--HH------HHHHHHHhHHHHHHHHHHHhcC
Confidence 578999988888899999999999999999999999999999854211 10 0111211 1234556677766
Q ss_pred CCCHHHHHHHHHHHHHhhcChHHH----HHHHHcCcHHHHHHHHHhcCCcCcHHHHHHHHHHHh
Q 016639 324 GLSSPSLISASIALKAVAVNDEIC----KSVAENGGIDALLRCIDDSGLQGNKTVARICCSLLS 383 (385)
Q Consensus 324 ~~~~~v~~~a~~aL~~La~~~e~c----~~I~e~GGl~~Lv~ll~~~~~~~~~~v~k~a~~~Lr 383 (385)
. |=-+....+..|+.+-.+..+. +-|.+..-+..++.+|++ ..+.++=+|+.+.+
T Consensus 221 ~-NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d----~sk~Iq~EAFhVFK 279 (341)
T 1upk_A 221 E-NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRD----KSRNIQFEAFHVFK 279 (341)
T ss_dssp S-SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTC----SCHHHHHHHHHHHH
T ss_pred C-cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcC----chhchhhhhhhhee
Confidence 4 5456788889999987764333 233344578888888886 33477777776543
No 115
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=25.10 E-value=96 Score=19.51 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHhhHHhcCCChhHHHHHHHHHHH
Q 016639 63 TISQEAFDEVVKENMEDLGMEPTEALQDAIQTLS 96 (385)
Q Consensus 63 ~isqetfd~~v~eni~~f~m~~~eAl~~aI~qfe 96 (385)
+++.+. -+-+.+-....+++..+.+++||..|-
T Consensus 8 ~l~~~l-~~~Ld~~a~~~g~srS~~ir~ai~~~l 40 (45)
T 2cpg_A 8 TLSESV-LENLEKMAREMGLSKSAMISVALENYK 40 (45)
T ss_dssp EEEHHH-HHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ecCHHH-HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 355666 344556667788999999999999974
No 116
>4dvg_B Diaphanous protein; cytoskeleton, armadillo repeat, GTPase-binding domain, nucle binding, signaling protein, lipoprotein; HET: GSP; 2.60A {Entamoeba histolytica}
Probab=22.19 E-value=2.8e+02 Score=24.48 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhhcChHHHHHHHHcCcHHHHHHHHHhcCCcCc----HHHHHHHHHHHh
Q 016639 315 RALVHSLHAGLSSPSLISASIALKAVAVNDEICKSVAENGGIDALLRCIDDSGLQGN----KTVARICCSLLS 383 (385)
Q Consensus 315 ~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~e~c~~I~e~GGl~~Lv~ll~~~~~~~~----~~v~k~a~~~Lr 383 (385)
+.|.++|+...+-.++.+..-..+.-.+ .+...++..||+.-|+.+-....+.+| -+--|.||..||
T Consensus 69 kyladllktrddmdllnemvvvfrsssv--sfiktfvsvgglanlmaiykkkieaensntaideerkccevlr 139 (353)
T 4dvg_B 69 KYLADLLKTRDDMDLLNEMVVVFRSSSV--SFIKTFVSVGGLANLMAIYKKKIEAENSNTAIDEERKCCEVLR 139 (353)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHSCH--HHHHHHHHTSTHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchHHHhhhheEEEeccch--hHHHHHhhhccHHHHHHHHHHHhhccccccchhhHHHHHHHHH
No 117
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=21.33 E-value=4.6e+02 Score=23.78 Aligned_cols=123 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCccCCCCCCCCCCchHHHHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhh
Q 016639 86 EALQDAIQTLSLQGVDLSGIVKCVPGESSLKDNPLIQSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVN 165 (385)
Q Consensus 86 eAl~~aI~qfe~QGvdLsni~~~~~~~~~~~~~~v~~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~ 165 (385)
|.+..++.-+..+|..++.- .+...+..|...+... ....-..+-..|+.++.- .+..
T Consensus 109 ~~L~~l~~~l~~~~y~~~~~-------------ea~~~lP~LveKlGd~-------k~~vR~~~r~il~~l~~v--~~~~ 166 (266)
T 2of3_A 109 ELCKVIVELIRDTETPMSQE-------------EVSAFVPYLLLKTGEA-------KDNMRTSVRDIVNVLSDV--VGPL 166 (266)
T ss_dssp HHHHHHHHHHHHTTCCCCHH-------------HHHHHHHHHHHGGGCS-------SHHHHHHHHHHHHHHHHH--HCHH
T ss_pred HHHHHHHHHHHhccccchHH-------------HHHHHHHHHHHHhCCC-------hHHHHHHHHHHHHHHHHH--CCHH
Q ss_pred HHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHHHHhcCCccchhHhhCCCc---HHHHHHHhcCCCCHHHHHHHHHH
Q 016639 166 AAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMALLVHDVQSTETFRTGGGP---KLLVNILIDGNEDPEILNSGFAV 242 (385)
Q Consensus 166 r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi---~~Lv~lL~~~~~~~~v~~~a~~~ 242 (385)
+. .+.++.-+++ .+..+...++..++.+....... -..++ +.+..+|.+ .|..|..+|+.+
T Consensus 167 ~v-------~~~l~~g~ks---KN~R~R~e~l~~l~~li~~~G~~----~~~~l~~~~~ia~ll~D--~d~~VR~aAl~~ 230 (266)
T 2of3_A 167 KM-------TPMLLDALKS---KNARQRSECLLVIEYYITNAGIS----PLKSLSVEKTVAPFVGD--KDVNVRNAAINV 230 (266)
T ss_dssp HH-------HHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHCSG----GGGGGCHHHHHGGGGGC--SSHHHHHHHHHH
T ss_pred HH-------HHHHHHHHcc---CCHHHHHHHHHHHHHHHHhcCCC----ccccccchHHHHHHHcC--CCHHHHHHHHHH
Q ss_pred HHHH
Q 016639 243 VAAS 246 (385)
Q Consensus 243 L~~~ 246 (385)
+..+
T Consensus 231 lve~ 234 (266)
T 2of3_A 231 LVAC 234 (266)
T ss_dssp HHHH
T ss_pred HHHH
No 118
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=20.67 E-value=5.3e+02 Score=28.20 Aligned_cols=119 Identities=8% Similarity=0.053 Sum_probs=72.5
Q ss_pred cHhHHHHHHHHHHHHhcCCccchhHhhCCCcHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCCh
Q 016639 189 SKRVLDSCLKTMALLVHDVQSTETFRTGGGPKLLVNILID-----GNEDPEILNSGFAVVAASATGNEVVKESYMELKID 263 (385)
Q Consensus 189 d~~vl~~Al~aLa~L~~~~~~~~~i~~~ggi~~Lv~lL~~-----~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i 263 (385)
+..-..-+|++|+|+-.. ..++.|..+|.. ......+..+|+++|+.++..++.. +-
T Consensus 453 ~~~~~~~~LkaLGN~g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~ 514 (1056)
T 1lsh_A 453 KEEEIVLALKALGNAGQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQ 514 (1056)
T ss_dssp CHHHHHHHHHHHHHHTCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HH
T ss_pred ChHHHHHHHHHhhccCCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HH
Confidence 455566778999987441 235566666542 1224567888999999887544322 23
Q ss_pred HHHHHHHccC--ChHHHHHHHHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 016639 264 ELILEILSRQ--RNDSIQSLYDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVA 341 (385)
Q Consensus 264 ~~Lv~lL~~~--~~~v~k~A~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La 341 (385)
+.+..+..+. ..+++-.|+..|.. +..+. ..+..+...|..-.+..|..-+...|.+++
T Consensus 515 ~il~~i~~n~~e~~EvRiaA~~~Lm~-t~P~~------------------~~l~~ia~~l~~E~~~QV~sfv~S~l~sla 575 (1056)
T 1lsh_A 515 EIVLPIFLNVAIKSELRIRSCIVFFE-SKPSV------------------ALVSMVAVRLRREPNLQVASFVYSQMRSLS 575 (1056)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHHHHHH-TCCCH------------------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCChHHHHHHHHHHHH-HCcCH------------------HHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 3567777543 33666666655542 22221 125667777776446778778888888888
Q ss_pred cCh
Q 016639 342 VND 344 (385)
Q Consensus 342 ~~~ 344 (385)
..+
T Consensus 576 ~s~ 578 (1056)
T 1lsh_A 576 RSS 578 (1056)
T ss_dssp TCC
T ss_pred hcC
Confidence 764
No 119
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=20.39 E-value=4.5e+02 Score=23.30 Aligned_cols=187 Identities=13% Similarity=0.061 Sum_probs=106.7
Q ss_pred HHHHHHHHHhhcCCCCCCcccHHHHHHHHHHHHHHhcCCCChhhHHHHHHcCcHHHHHHHHhcccCCcHhHHHHHHHHHH
Q 016639 122 QSLERLKQLDLNSKDKFSDEDLNEMMGLFDKLIELCGGNEGSVNAAVATKNGGVELVCSICYKMRCGSKRVLDSCLKTMA 201 (385)
Q Consensus 122 ~al~~L~~~l~~~~~~~~~~~~~~~~~al~~L~~lc~~~~~~~~r~~~~~~Gaip~Lv~lL~~~~~~d~~vl~~Al~aLa 201 (385)
..++.+..+++.+ --..+.+++..+..+.+. -|+-..- .+.-|+.++++. ....+-..-.++++
T Consensus 32 ~~l~~lI~~LDDD-------lwtV~kNAl~vi~~i~~~--~~el~ep-----l~~kL~vm~~ks--EaIpltqeIa~a~G 95 (253)
T 2db0_A 32 SVLKKLIELLDDD-------LWTVVKNAISIIMVIAKT--REDLYEP-----MLKKLFSLLKKS--EAIPLTQEIAKAFG 95 (253)
T ss_dssp HHHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTT--CGGGHHH-----HHHHHHHHHHHC--CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccH-------HHHHHHhHHHHHHHHHHH--hHHHHHH-----HHHHHHHHHhhc--ccCchHHHHHHHHh
Confidence 5688899998864 345788999999999886 5552221 234455566653 22222122234444
Q ss_pred HHhcCCccchhHhhCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChhhHHHHHhCCChHHHHHHHccCChHHHHHH
Q 016639 202 LLVHDVQSTETFRTGGGPKLLVNILIDGNEDPEILNSGFAVVAASATGNEVVKESYMELKIDELILEILSRQRNDSIQSL 281 (385)
Q Consensus 202 ~L~~~~~~~~~i~~~ggi~~Lv~lL~~~~~~~~v~~~a~~~L~~~~~~~e~nr~~iv~~G~i~~Lv~lL~~~~~~v~k~A 281 (385)
.+..-. |+++. +.+|.+..=++- .++++.-.-..+|..++.-|+.--.. +..-+..+|.+.+..-.-.|
T Consensus 96 ~la~i~---Pe~v~-~vVp~lfanyri--gd~kikIn~~yaLeeIaranP~l~~~-----v~rdi~smltskd~~Dkl~a 164 (253)
T 2db0_A 96 QMAKEK---PELVK-SMIPVLFANYRI--GDEKTKINVSYALEEIAKANPMLMAS-----IVRDFMSMLSSKNREDKLTA 164 (253)
T ss_dssp HHHHHC---HHHHH-HHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHTSCSSHHHHHHH
T ss_pred HHHHhC---HHHHH-hhHHHHHHHHhc--CCccceecHHHHHHHHHHhChHHHHH-----HHHHHHHHhcCCChHHHHHH
Confidence 443322 33322 112333332232 36676666666777777666654333 34456677776554333335
Q ss_pred HHHHHHhcCCCccchhhhhchhHHHHHHhcCcHHHHHHHHhcCCCHHHHHHHHHHHHHhhcCh-HHHHHH
Q 016639 282 YDAIRVLLTPDDDQVVASQVYGYARRFAKIGIARALVHSLHAGLSSPSLISASIALKAVAVND-EICKSV 350 (385)
Q Consensus 282 ~~aL~~Lt~~Dd~rv~~g~a~~~a~~I~e~Ggi~~Lv~lL~~~~~~~v~~~a~~aL~~La~~~-e~c~~I 350 (385)
...|..|..+ |-+++. --+|.|..+|... |.-|..++..+|.++|.-+ ..+..|
T Consensus 165 LnFi~alGen------------~~~yv~--PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii 219 (253)
T 2db0_A 165 LNFIEAMGEN------------SFKYVN--PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVV 219 (253)
T ss_dssp HHHHHTCCTT------------THHHHG--GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHhcc------------CccccC--cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHH
Confidence 5555555421 123443 2388999998774 7778889999999999765 444433
Done!