BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016642
         (385 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DVT|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           From Rhizobium
 pdb|2DVT|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           From Rhizobium
 pdb|2DVT|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           From Rhizobium
 pdb|2DVT|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           From Rhizobium
 pdb|2DVU|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           Complexed With 2,6-Dihydroxybenzoate
 pdb|2DVU|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           Complexed With 2,6-Dihydroxybenzoate
 pdb|2DVU|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           Complexed With 2,6-Dihydroxybenzoate
 pdb|2DVU|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           Complexed With 2,6-Dihydroxybenzoate
 pdb|2DVX|A Chain A, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
 pdb|2DVX|B Chain B, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
 pdb|2DVX|C Chain C, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
 pdb|2DVX|D Chain D, Crystal Structure Of 2,6-Dihydroxybenzoate Decarboxylase
           Complexed With Inhibitor 2,3-Dihydroxybenzaldehyde
          Length = 327

 Score = 36.2 bits (82), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 19/85 (22%)

Query: 76  WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHR 135
           W   P +  AQ T   A+ ++      G F E P LN  +GH+      +PY  WRI HR
Sbjct: 181 WLLGPTWAFAQETAVHALRLMAS----GLFDEHPRLNIILGHMGEG---LPYMMWRIDHR 233

Query: 136 THHQNHGNVEHDESWVPMPEKIYSK 160
                        +WV +P +  +K
Sbjct: 234 N------------AWVKLPPRYPAK 246


>pdb|3S4T|A Chain A, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
           500288)from Polaromonas Sp. Js666
 pdb|3S4T|B Chain B, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
           500288)from Polaromonas Sp. Js666
 pdb|3S4T|C Chain C, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
           500288)from Polaromonas Sp. Js666
 pdb|3S4T|D Chain D, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
           500288)from Polaromonas Sp. Js666
 pdb|3S4T|E Chain E, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
           500288)from Polaromonas Sp. Js666
 pdb|3S4T|F Chain F, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
           500288)from Polaromonas Sp. Js666
 pdb|3S4T|G Chain G, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
           500288)from Polaromonas Sp. Js666
 pdb|3S4T|H Chain H, Crystal Structure Of Putative Amidohydrolase-2 (Efi-Target
           500288)from Polaromonas Sp. Js666
          Length = 348

 Score = 30.8 bits (68), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 75  TWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISH 134
            W   P +   Q T   A+ +     G G F + P L   +GH       +PY+ WRI H
Sbjct: 180 AWLLGPTWAFGQETAVHALRL----XGSGLFDKYPALKIILGHXGEG---LPYSXWRIDH 232

Query: 135 RT 136
           R 
Sbjct: 233 RN 234


>pdb|1KQF|C Chain C, Formate Dehydrogenase N From E. Coli
 pdb|1KQG|C Chain C, Formate Dehydrogenase N From E. Coli
          Length = 217

 Score = 28.5 bits (62), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 5/63 (7%)

Query: 211 VISTACWTFMFGLLVYLSFVFGPITMFKL----YGVPYLIFVMWLDFVTYLHHHGDDEHK 266
           +++ +  +F F  L +L+  FG   M ++    +G+   + +M++ FV ++HH+  D+  
Sbjct: 27  LVALSGISFFFPTLQWLTQTFGTPQMGRILHPFFGIAIFVALMFM-FVRFVHHNIPDKKD 85

Query: 267 LPW 269
           +PW
Sbjct: 86  IPW 88


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.141    0.477 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,957,344
Number of Sequences: 62578
Number of extensions: 552772
Number of successful extensions: 952
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 951
Number of HSP's gapped (non-prelim): 5
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)