Query 016642
Match_columns 385
No_of_seqs 247 out of 1798
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 08:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02498 omega-3 fatty acid de 100.0 3.9E-83 8.6E-88 621.1 32.0 356 20-376 91-446 (450)
2 PLN02505 omega-6 fatty acid de 100.0 8.9E-72 1.9E-76 539.4 32.4 339 22-370 22-380 (381)
3 PLN02598 omega-6 fatty acid de 100.0 1.6E-63 3.5E-68 487.6 28.2 326 28-371 75-403 (421)
4 cd03507 Delta12-FADS-like The 100.0 1.7E-41 3.6E-46 309.2 17.5 220 47-316 1-222 (222)
5 COG3239 DesA Fatty acid desatu 100.0 2.4E-39 5.3E-44 312.3 20.7 282 30-330 15-299 (343)
6 cd03511 Rhizopine-oxygenase-li 100.0 1.5E-38 3.3E-43 301.4 21.7 269 43-331 8-277 (285)
7 PLN03198 delta6-acyl-lipid des 100.0 1.6E-36 3.4E-41 305.8 20.3 304 32-353 188-509 (526)
8 PLN03199 delta6-acyl-lipid des 100.0 1.3E-35 2.9E-40 298.7 17.2 293 33-330 114-447 (485)
9 cd03506 Delta6-FADS-like The D 100.0 4.3E-36 9.4E-41 270.9 11.0 197 82-330 3-202 (204)
10 cd03514 CrtR_beta-carotene-hyd 100.0 6.4E-34 1.4E-38 256.5 15.1 184 75-329 20-204 (207)
11 PLN02579 sphingolipid delta-4 100.0 7.8E-33 1.7E-37 263.2 21.1 286 14-346 7-301 (323)
12 cd03508 Delta4-sphingolipid-FA 100.0 4E-32 8.6E-37 255.4 20.3 247 42-328 9-259 (289)
13 cd03509 DesA_FADS-like Fatty a 100.0 2E-31 4.3E-36 251.2 20.3 221 82-329 30-259 (288)
14 cd03510 Rhizobitoxine-FADS-lik 100.0 1.3E-31 2.8E-36 235.2 12.2 170 59-323 1-175 (175)
15 PF00487 FA_desaturase: Fatty 100.0 4.8E-31 1E-35 243.7 12.6 245 76-332 3-251 (257)
16 cd03513 CrtW_beta-carotene-ket 100.0 3.4E-30 7.3E-35 233.4 17.4 188 80-319 33-224 (225)
17 KOG2987 Fatty acid desaturase 99.9 1.9E-27 4E-32 210.2 12.1 278 13-336 2-289 (324)
18 KOG4232 Delta 6-fatty acid des 99.9 5.7E-27 1.2E-31 222.5 14.5 297 32-352 100-413 (430)
19 cd03512 Alkane-hydroxylase Alk 99.8 4.7E-19 1E-23 169.2 15.7 237 75-354 68-311 (314)
20 cd01060 Membrane-FADS-like The 99.7 5.1E-18 1.1E-22 140.1 7.9 59 92-150 14-72 (122)
21 PF11960 DUF3474: Domain of un 99.2 7.4E-12 1.6E-16 101.5 4.9 56 12-67 80-135 (136)
22 COG1398 OLE1 Fatty-acid desatu 98.4 3.1E-06 6.7E-11 77.2 11.3 52 97-149 66-118 (289)
23 PLN02220 delta-9 acyl-lipid de 98.2 6.8E-05 1.5E-09 71.0 15.4 48 101-149 81-128 (299)
24 KOG1600 Fatty acid desaturase 97.2 0.0053 1.1E-07 57.7 12.2 47 101-149 92-139 (321)
25 cd03505 Delta9-FADS-like The D 97.0 0.011 2.4E-07 51.8 11.2 48 101-149 28-75 (178)
26 PF08557 Lipid_DES: Sphingolip 73.0 2.1 4.5E-05 27.5 1.2 35 16-50 1-38 (39)
27 PF13829 DUF4191: Domain of un 65.1 23 0.00049 32.2 6.6 64 32-97 9-72 (224)
28 PLN02601 beta-carotene hydroxy 42.0 75 0.0016 29.7 6.0 80 44-139 177-259 (303)
29 cd05141 Barstar_evA4336-like B 41.9 34 0.00073 25.7 3.3 56 316-381 11-68 (81)
30 cd03511 Rhizopine-oxygenase-li 40.3 43 0.00093 31.5 4.5 13 301-313 98-110 (285)
31 cd03509 DesA_FADS-like Fatty a 29.6 4E+02 0.0087 25.2 9.2 15 130-144 228-242 (288)
32 PF04298 Zn_peptidase_2: Putat 28.2 17 0.00037 33.0 -0.4 18 86-103 83-100 (222)
33 TIGR02230 ATPase_gene1 F0F1-AT 25.5 3.4E+02 0.0073 21.4 6.9 10 46-55 35-44 (100)
34 PF01337 Barstar: Barstar (bar 24.0 71 0.0015 24.2 2.5 57 314-380 9-67 (90)
35 PLN02505 omega-6 fatty acid de 21.8 2.4E+02 0.0052 27.9 6.3 36 85-120 261-296 (381)
36 PF06970 RepA_N: Replication i 21.0 38 0.00082 25.2 0.4 24 354-377 39-62 (76)
No 1
>PLN02498 omega-3 fatty acid desaturase
Probab=100.00 E-value=3.9e-83 Score=621.08 Aligned_cols=356 Identities=76% Similarity=1.404 Sum_probs=331.5
Q ss_pred CCCCCCCCCCCCCHHHHHHhccccccccCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 016642 20 GDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHD 99 (385)
Q Consensus 20 ~~~~~~~~~~~~~~~~ir~~ip~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~G~~~~~l~~l~Hd 99 (385)
..++++.++|+||++|||++||+|||++|++|++.++++|+++++++++++.+.++|++|+++|+++|++++++++++||
T Consensus 91 ~~~~~~~~~p~~tl~dir~aIP~hcF~~s~~rs~~yv~~d~~vi~~l~~~a~~~~~w~~wpl~w~~~G~~~~gL~vl~HD 170 (450)
T PLN02498 91 EGEFDPGAPPPFNLADIRAAIPKHCWVKNPWRSMSYVVRDVAVVFGLAAAAAYFNNWVVWPLYWFAQGTMFWALFVLGHD 170 (450)
T ss_pred ccccCCCCCCCCCHHHHHHhCCHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33477888999999999999999999999999999999999999888877777778999999999999999999999999
Q ss_pred ccCccccCCchhhHHHHHHHHhhccCchhhhhhhhhhhccCCCCCCCCCccCCCcHHhhhcCCcccchhHhhhhhhHHHH
Q 016642 100 CGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPLPMLAY 179 (385)
Q Consensus 100 ~~H~s~~~~~~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (385)
|||+++|+++++|+++|.+++.++++|+..||.+|+.||++||+.++||++.|.++++|+.++...++.++..++.++++
T Consensus 171 cgHgsf~~~k~lNd~vG~ll~~~ll~py~~Wr~sH~~HH~~Tn~~e~D~~~~P~t~~~y~~l~~~~~~~~~~~~~~~~g~ 250 (450)
T PLN02498 171 CGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHPLSEKIYKSLDKVTRTLRFTLPFPMLAY 250 (450)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHhccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999887666677666556667889
Q ss_pred HHHHHHhcCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccceehhhhhHHHHHHHHHHHHHhhc
Q 016642 180 PAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVTYLHH 259 (385)
Q Consensus 180 p~~l~~~~~~~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~lvP~l~~~~~l~~~~~l~H 259 (385)
|+|++.+.+|+.++||+|.+++|.++++.+++.|.++++++.++++.++...|++.++.+|++|++++++|++++|++||
T Consensus 251 p~YL~~~~~g~~~sHF~p~s~lF~~~er~~V~~S~~~~~~~~~~l~~l~~~~G~~~~l~~Y~vP~lv~~~WL~~iTyLhH 330 (450)
T PLN02498 251 PFYLWSRSPGKKGSHFHPDSDLFVPKERKDVITSTACWTAMAALLVCLSFVMGPIQMLKLYGIPYWIFVMWLDFVTYLHH 330 (450)
T ss_pred HHHHhhhccCCcCcccCCCcccCChhhhhheeeehHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999998888889999999999999999999999999888888777777889999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccccceeeeecccchhhhhhcccccchhhhhcCCCCCCCHHHHHHHhchhhhhccccCCCCCC
Q 016642 260 HGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYREPNKSGP 339 (385)
Q Consensus 260 ~~~~d~~~p~~~~~~w~~~~~~~~Tv~~~~~~l~~l~~~i~yH~~HHlfP~iP~y~Lp~a~~~lk~~~~~~y~~~~~~~~ 339 (385)
++. ||++|+|+++||+++|||++|+||+|||++++++||++|++||+||+||+|||+||++++|+++|+||+|+++++|
T Consensus 331 t~~-~~~iP~y~~~eWs~~rGaL~TvDR~yg~i~~l~H~I~tHV~HHlf~~IPhYhl~eAt~aiK~~lg~yy~e~~~~~~ 409 (450)
T PLN02498 331 HGH-EDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDIGTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYREPKKSGP 409 (450)
T ss_pred cCC-CCCCCCCCCCCcchhhccceeecCcccchhhhhcCcccchhhhccCCCCCcCHHHHHHHHHHHhHHheecCCCCCC
Confidence 976 6789999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred ChHHHHHHHHHHhcccEEEecCCcEEEEecCcccchh
Q 016642 340 IPVHLIKNLVKSIGEDHFVSDTGEIVYYETDPQLKKF 376 (385)
Q Consensus 340 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (385)
+|..++++|||++++|++||+++++++|+++.++...
T Consensus 410 ~p~~~~~~l~r~~~~c~~v~~~~~v~~y~~~~~~~~~ 446 (450)
T PLN02498 410 LPFHLLGSLIRSMKQDHYVSDTGDVVYYQTDPQLSGS 446 (450)
T ss_pred chhHHHHHHHHHhcceEEEeCCCCEEEEecccccccc
Confidence 8888999999999999999999999999999888643
No 2
>PLN02505 omega-6 fatty acid desaturase
Probab=100.00 E-value=8.9e-72 Score=539.40 Aligned_cols=339 Identities=41% Similarity=0.765 Sum_probs=295.9
Q ss_pred CCCCCCCCCCCHHHHHHhccccccccCcchHHHHHHHHHHHHHHHHHHHH-Hh---h---hHHHHHHHHHHHHHHHHHHH
Q 016642 22 SFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALLAAAT-HF---N---TWFFWPLYWVAQGTMFWAIF 94 (385)
Q Consensus 22 ~~~~~~~~~~~~~~ir~~ip~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~-~~---~---~w~~~~l~~~~~G~~~~~l~ 94 (385)
+..+.++|++|++|||++||++||++|++|++.+++.|+++++++++++. +. + .|++|+++|+++|+++.+++
T Consensus 22 ~~~~~~~p~~tl~~ir~aiP~~~f~~s~~rs~~~v~~d~~~i~~~~~~a~~~~~~~p~~~~~~l~~~~~~~~G~~~~~l~ 101 (381)
T PLN02505 22 KRVPSSKPPFTLGDIKKAIPPHCFKRSVLRSFSYLVYDLLIAALLYYVATNYIPLLPGPLSYVAWPLYWAAQGCVLTGVW 101 (381)
T ss_pred ccCCCCCCCccHHHHHHhCCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667789999999999999999999999999999999999988776554 22 2 35678889999999999999
Q ss_pred hhhccccCccccCCchhhHHHHHHHHhhccCchhhhhhhhhhhccCCCCCCCCCccCCCcHHhhhcC-----CcccchhH
Q 016642 95 VLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKL-----DSSTRILR 169 (385)
Q Consensus 95 ~l~Hd~~H~s~~~~~~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~~-----~~~~~~~~ 169 (385)
+++|||||+++|+++++|+++|.+++.++++|+.+||.+|+.||++||+.++|+++.|.+++++... .+..++.+
T Consensus 102 vl~HDcgH~s~~~~~~lN~~vG~i~~~~ll~p~~~Wr~~H~~HH~~tn~~~~D~~~~P~~~~~~~~~~~~~~~p~~~~~~ 181 (381)
T PLN02505 102 VIAHECGHHAFSDYQWLDDTVGLVLHSALLVPYFSWKYSHRRHHSNTGSLERDEVFVPKKKSALPWYSKYLNNPPGRLLH 181 (381)
T ss_pred HHHHhhcchhhhCChHHHHHHHHHHHHHHcCCHHHHHHHHHHHhhccCCCCCCccccCcCHHHHhHHHHHhcChHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988876654321 11112211
Q ss_pred hhhhhhHHHHHHHHHHhcCC----CCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccceehhhhhHH
Q 016642 170 FSLPLPMLAYPAYLWYRSPG----KDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPYL 245 (385)
Q Consensus 170 ~~~~~~~~~~p~~l~~~~~~----~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~lvP~l 245 (385)
. .....+++|+|++.+..| +..+||+|.+++|+++++.++..|++++++++++++.++...|++.++.+|++|++
T Consensus 182 ~-~~~~~~G~p~yl~~~~~g~~~~~~~~hf~p~s~lf~~~er~~v~~S~~~i~~~~~~l~~~~~~~G~~~~l~~y~vP~l 260 (381)
T PLN02505 182 I-VVQLTLGWPLYLAFNVSGRPYDRFACHFDPYSPIFNDRERLQIYISDAGILAVSFGLYRLAAAKGLAWVLCVYGVPLL 260 (381)
T ss_pred H-HHHHHhHHHHHHHhhhcCCCCCcccccCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 1 123456889998866654 24589999999999999999999999988888877777777899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccccceeeeecccchhhhhhcccc-cchhhhhcCCCCCCCHHHHHHHhc
Q 016642 246 IFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIG-THVIHHLFPQIPHYHLVEATKAAK 324 (385)
Q Consensus 246 ~~~~~l~~~~~l~H~~~~d~~~p~~~~~~w~~~~~~~~Tv~~~~~~l~~l~~~i~-yH~~HHlfP~iP~y~Lp~a~~~lk 324 (385)
+++.|+++++++||+ +|++|+++++||++.+||++|+|++++|++++++||+ +|++||++|+||+|||+||++++|
T Consensus 261 v~~~wlv~itylqHt---~~~ip~~~~~~W~~~rgAl~tvdr~yg~~~~l~h~I~~~Hv~HHl~srIP~Y~l~eA~~aik 337 (381)
T PLN02505 261 IVNAFLVLITYLQHT---HPALPHYDSSEWDWLRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIK 337 (381)
T ss_pred HHHHHHHHHHHHhcc---CCCCCccCCCCcChhhccceeccCcchHHHHHHccCCcccchhhccCCCCCCCHHHHHHHHH
Confidence 999999999999999 4689999999999999999999999999999999997 999999999999999999999999
Q ss_pred hhhhhccccCCCCCCChHHHHHHHHHHhcccEEEecC---CcEEEEecC
Q 016642 325 PVLGKYYREPNKSGPIPVHLIKNLVKSIGEDHFVSDT---GEIVYYETD 370 (385)
Q Consensus 325 ~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~ 370 (385)
+++|++|++++++ ++++|||++++|++||++ ++|++|+++
T Consensus 338 ~~lg~~y~~~~~~------~~~~l~~~~~~C~~v~~~~~~~~v~~~~~~ 380 (381)
T PLN02505 338 PILGEYYQFDGTP------VYKALWREAKECIYVEPDEGGKGVFWYNNK 380 (381)
T ss_pred HHhHHHhcCCCCc------HHHHHHHHhcceEEeCcCCCCCceEEEecC
Confidence 9999999988654 799999999999999987 489999874
No 3
>PLN02598 omega-6 fatty acid desaturase
Probab=100.00 E-value=1.6e-63 Score=487.64 Aligned_cols=326 Identities=26% Similarity=0.495 Sum_probs=275.5
Q ss_pred CCCCCHHHHHHhccccccccCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccccCccccC
Q 016642 28 PPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSE 107 (385)
Q Consensus 28 ~~~~~~~~ir~~ip~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~G~~~~~l~~l~Hd~~H~s~~~ 107 (385)
+|++|++||+++||++||++|++|++.+++.+++++++++++ ....+|++++++++++|+.++++++++|||+|+++++
T Consensus 75 ~~~~tl~~i~~aiP~~~F~~s~~rs~~~l~~~i~~~~~~~~~-~~~~~w~~~~l~~~~~G~~~~~l~vl~Hec~H~s~~~ 153 (421)
T PLN02598 75 PDNVTLKDVVKTLPKEVFEIDDFKAWKTVAITVTSYALGLAA-IAVAPWYLLPLAWAWLGTAITGFFVIGHDCGHNSFSK 153 (421)
T ss_pred CCCcCHHHHHHhCCHHHcCCCHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC
Confidence 477999999999999999999999999999999887555443 2334677889999999999999999999999999999
Q ss_pred CchhhHHHHHHHHhhccCchhhhhhhhhhhccCCCCCCCCCccCCCcHHhhhcCCcccchhHhhhhhhHHHHHHHHHHhc
Q 016642 108 SPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPLPMLAYPAYLWYRS 187 (385)
Q Consensus 108 ~~~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~ 187 (385)
++++|+++|.+++.++++|+..||.+|+.||++||+.++|||+.|.++++|...+++.++. . ...++ |+|++.+.
T Consensus 154 ~~~lN~~vG~~~~~~ll~p~~~wr~~H~~HH~~tn~~~~D~~~~p~t~~e~~~~~~~~r~l---~-~~~~G-P~yl~~~~ 228 (421)
T PLN02598 154 NQLVEDIVGTIAFTPLIYPFEPWRIKHNTHHAHTNKLVMDTAWQPFRPHQFDNADPLRKAM---M-RAGMG-PLWWWASI 228 (421)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccCcCCCCCCCCcCCcCHHHHhhcCHHHHHH---H-HHhHh-HHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998887654433321 1 11334 88776544
Q ss_pred CCCCcccccCCCCCCCcchhHHHHHHHHHHHHHH-HHHHHHHHHhccccceehhhhhHHHHHHHHHHHHHhhcCCCCCCC
Q 016642 188 PGKDGSHFNPYSSLFSPGERKAVVISTACWTFMF-GLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHK 266 (385)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~-~~l~~~~~~~g~~~~l~~~lvP~l~~~~~l~~~~~l~H~~~~d~~ 266 (385)
......||++. .|+++++.++..+.++.++++ ++++.+....|.+.++.+|++|+++.+.|+++++++||+ +|+
T Consensus 229 ~~~~~~hf~~~--~f~~~er~~v~~S~~~v~~~~~~~l~~~~~~~G~~~~~~~ylvP~Lv~~~wl~~it~lhHt---~p~ 303 (421)
T PLN02598 229 GHWLFWHFDLN--KFRPQEVPRVKISLAAVFAFMALGLPPLLYTTGPVGFVKWWLMPWLGYHFWMSTFTMVHHT---APH 303 (421)
T ss_pred hcceeeccCcc--cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCC
Confidence 22234567664 377888888888887765543 333334455788888899999999999999999999999 458
Q ss_pred CCCCCCCccccccccee-eeecccc-hhhhhhcccccchhhhhcCCCCCCCHHHHHHHhchhhhhccccCCCCCCChHHH
Q 016642 267 LPWYRGKEWNYLRGGLT-TVDRDYG-IFNNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYREPNKSGPIPVHL 344 (385)
Q Consensus 267 ~p~~~~~~w~~~~~~~~-Tv~~~~~-~l~~l~~~i~yH~~HHlfP~iP~y~Lp~a~~~lk~~~~~~y~~~~~~~~~~~~~ 344 (385)
+|+++++||++.+++++ |++++++ |+++|++|||+|++||+||+||+||||++++++|+.+|++|+++.. .
T Consensus 304 ip~~~~~eW~~~~~al~~Tv~~~~~~~~~~L~hnIn~HV~HHLfP~IP~Y~lpea~~alk~~~g~~y~~~~~-------~ 376 (421)
T PLN02598 304 IPFKQAREWNAAQAQLNGTVHCDYPAWIEFLCHDISVHIPHHISSKIPSYNLRKAHASLQENWGKHLNKATF-------N 376 (421)
T ss_pred CCccccccccHhhhhhcCceecCCcHHHHHHHcCCccchhhhcCCCCCcchHHHHHHHHHHHhccccccCch-------h
Confidence 99999999999999986 8999886 7799999999999999999999999999999999999999998732 4
Q ss_pred HHHHHHHhcccEEEecCCcEEEEecCc
Q 016642 345 IKNLVKSIGEDHFVSDTGEIVYYETDP 371 (385)
Q Consensus 345 ~~~l~~~~~~~~~~~~~~~~~~~~~~~ 371 (385)
++++++..+.|+++|++++.+.|++..
T Consensus 377 ~~~l~~~~~~C~~~d~~~~~~~f~~~~ 403 (421)
T PLN02598 377 WRLMKTILTQCHVYDKEKNYVPFDNLA 403 (421)
T ss_pred HHHHHHHhhheEEEcCCCCeeeccccC
Confidence 899999999999999999988998744
No 4
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=100.00 E-value=1.7e-41 Score=309.24 Aligned_cols=220 Identities=49% Similarity=0.963 Sum_probs=174.9
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccccCccccCCchhhHHHHHHHHhhccCc
Q 016642 47 KNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVP 126 (385)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~G~~~~~l~~l~Hd~~H~s~~~~~~~N~~vG~i~~~~~~~p 126 (385)
+|.++++.+++.|+++++++++++....+|++++++++++|+.++++++++|||+|+++++++++|+++|.+++.+++.|
T Consensus 1 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~l~He~~H~~~~~~~~~N~~~g~~~~~~~~~p 80 (222)
T cd03507 1 RSLFRSLSYLAPDILLLALLALAASLLLSWWLWPLYWIVQGLFLTGLFVLGHDCGHGSFSDNRRLNDIVGHILHSPLLVP 80 (222)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhccCCcccccchhHHHHHHHHHHHHHhCC
Confidence 47789999999999999888776655567878888999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhccCCCCCCCCCccCCCcHHhhhcCCcccchhHhhhhhhHHHHHHHHHHhcCCCCcccccCCCCCCCcch
Q 016642 127 YNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGE 206 (385)
Q Consensus 127 ~~~wr~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~l~~~~~ 206 (385)
+..||..|++||+++|+.++|+|+.|.++.++....... ++..
T Consensus 81 ~~~w~~~H~~HH~~~~~~~~D~~~~p~~~~~~~~~~~~~---~y~~---------------------------------- 123 (222)
T cd03507 81 YHSWRISHNRHHAHTGNLEGDEVWVPVTEEEYAELPKRL---PYRL---------------------------------- 123 (222)
T ss_pred hHHHHHHHHHHHhccCCCCCCCcccCcCHHHhhcccccc---hHHH----------------------------------
Confidence 999999999999999999999999887776554322111 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccccceehhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccccce-eee
Q 016642 207 RKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGL-TTV 285 (385)
Q Consensus 207 r~~v~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~lvP~l~~~~~l~~~~~l~H~~~~d~~~p~~~~~~w~~~~~~~-~Tv 285 (385)
..+ .+.+......++.+ .+ ++.+|++|+++.+.|+++++++||+. |++|+++++||++.+.|. +|+
T Consensus 124 ~~~----~~~~~~~g~~~~~~---~~---~~~~~~ip~l~~~~~l~~~t~l~H~~---~~~~~~~~~~w~~~~~q~~~t~ 190 (222)
T cd03507 124 YRN----PFLMLSLGWPYYLL---LN---VLLYYLIPYLVVNAWLVLITYLQHTF---PDIPWYRADEWNFAQAGLLGTV 190 (222)
T ss_pred HHH----HHHHHHHHHHHHHH---HH---HHHHHHhHHHHHHHHHHeeeEecCCC---CCCCCcCccccchhhhcceeee
Confidence 000 00000000001111 11 56689999999999999999999994 478999999999855554 688
Q ss_pred ecccc-hhhhhhcccccchhhhhcCCCCCCCH
Q 016642 286 DRDYG-IFNNIHHDIGTHVIHHLFPQIPHYHL 316 (385)
Q Consensus 286 ~~~~~-~l~~l~~~i~yH~~HHlfP~iP~y~L 316 (385)
|++++ |++++++|+|||+|||+||+||+|+|
T Consensus 191 ~~~~~~~~~~l~~~i~~hv~HHlfP~iP~y~l 222 (222)
T cd03507 191 DRDYGGWLNWLTHIIGTHVAHHLFPRIPHYNL 222 (222)
T ss_pred eccccHHHHHHhcCCCcccchhcCCCCCcCcC
Confidence 88774 78999999999999999999999986
No 5
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=100.00 E-value=2.4e-39 Score=312.26 Aligned_cols=282 Identities=27% Similarity=0.454 Sum_probs=187.9
Q ss_pred CCCHHHHHHhccccccccCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccccCccccCCc
Q 016642 30 PFKIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESP 109 (385)
Q Consensus 30 ~~~~~~ir~~ip~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~G~~~~~l~~l~Hd~~H~s~~~~~ 109 (385)
..+++.+++.+|+++++++.......++...+++++......++++|+.++++++++|+...++++++|||+|+++++++
T Consensus 15 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~~~~l~~~~~v~Hd~~Hgs~~~~r 94 (343)
T COG3239 15 AAPLDSIRARLPKPRTRRDAIAILITFLALAGLWALLALSLAYWPSWWLLPLALLLAGLLLTGLFSVGHDCGHGSFFKNR 94 (343)
T ss_pred ccchhhHHhhCccccccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhccccchhhhh
Confidence 35688999999999999888887777776666666555444455568888888889999999999999999999999999
Q ss_pred hhhHHHHHHHHhhccCchhhhhhhhhhhccCCCCCCCCCccCCCcHHhhhcCCcccchhHhhhhhhHHHHHHHHHHhcCC
Q 016642 110 LLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPLPMLAYPAYLWYRSPG 189 (385)
Q Consensus 110 ~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~ 189 (385)
|+||++|.+++.+.+.|+..||.+|++||++||+.++|||.....+. . ......+++. +..+.+.+.....
T Consensus 95 ~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~~~~~d~~~~~~~~~-~----~~~~~l~~~~----i~~~~~~~~~~~~ 165 (343)
T COG3239 95 WINDLIGHLAAALLLAPPVFWRISHNQHHAHTNILDDDPETYVSYPE-Q----LRRGPLRFQL----IRLPWLAFGFGPR 165 (343)
T ss_pred hHHHHHHHHHHHHHhcChhhhhhhHHHhhcccCCCCCCHHHHHhCch-h----hhhhhHHHHH----HHHHHHHHhhhhh
Confidence 99999999999998899999999999999999998888664211110 0 0011111111 1111111100000
Q ss_pred CCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccceehh-hhhHHHHHHHHHHHHHhhcCCCCCCCCC
Q 016642 190 KDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLY-GVPYLIFVMWLDFVTYLHHHGDDEHKLP 268 (385)
Q Consensus 190 ~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~-lvP~l~~~~~l~~~~~l~H~~~~d~~~p 268 (385)
....++...+..+.+.++...........+.+.....+ ....+| ++|+++.+.|...+++++|+- +.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~l~~~~~~~p~l~~~~~~~~~~~~~h~~---~~~~ 235 (343)
T COG3239 166 WALLHFELLEKLFKRSGKAPKAAALATLLAAIGLAALL-------ALAFFWGLIPLLLVGLWLVLVLFVHHTF---DLLP 235 (343)
T ss_pred hhhhhhhhhhhccCCcccchHHHHHHHHHHHHHHHHHH-------HHHHHHhHhHHHHHHHHHHHHHHhhccc---cccc
Confidence 00111111111222222222211111111111100011 112233 689999999999999999994 3567
Q ss_pred CCCCCccccccccee-eeecccc-hhhhhhcccccchhhhhcCCCCCCCHHHHHHHhchhhhhc
Q 016642 269 WYRGKEWNYLRGGLT-TVDRDYG-IFNNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLGKY 330 (385)
Q Consensus 269 ~~~~~~w~~~~~~~~-Tv~~~~~-~l~~l~~~i~yH~~HHlfP~iP~y~Lp~a~~~lk~~~~~~ 330 (385)
+....+|++...+.+ |++.+.+ +++++++|+|||+|||+||+||+|+||++++.+|+.+++.
T Consensus 236 ~~~~~d~~~~~~~l~~~~~~~~~~~~~~l~~n~nyH~~HHl~P~vP~y~lp~~~~~~~~~~~~~ 299 (343)
T COG3239 236 HHGLEDWQWSDRALNARSNVDAPPLLRFLTGNINYHVEHHLFPDVPWYRLPRAHRLIKEALGER 299 (343)
T ss_pred ccccccchHHHHHHhccCccCchHHHHHhcCCccccHhhhCCCCCchhhHHHHHHHHHHHcCcC
Confidence 766677766655543 3344444 7899999999999999999999999999999999999843
No 6
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=100.00 E-value=1.5e-38 Score=301.37 Aligned_cols=269 Identities=19% Similarity=0.188 Sum_probs=183.6
Q ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccccCccccCCchhhHHHHHHHHhh
Q 016642 43 HCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSS 122 (385)
Q Consensus 43 ~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~G~~~~~l~~l~Hd~~H~s~~~~~~~N~~vG~i~~~~ 122 (385)
++.++|+++++..++.++++++++.+++....+++..+++.+++|+.+.+++.++|||+|++++++|++|+++|.+++.+
T Consensus 8 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~ 87 (285)
T cd03511 8 QLMQRSDAPGLLDTALWLGALAVSGILIAWTWGSWWALPAFLVYGVLYAALFARWHECVHGTAFATRWLNDAVGQIAGLM 87 (285)
T ss_pred HHhCCcchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCchHHHHHHHHHHHH
Confidence 46689999999999999998877654443333333333445778999999999999999999999999999999999889
Q ss_pred ccCchhhhhhhhhhhccCCCCCCCCCccCCCcHHhhhcCCcccchhHhhhhh-hHHHHHHHHHHhcCCCCcccccCCCCC
Q 016642 123 ILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPL-PMLAYPAYLWYRSPGKDGSHFNPYSSL 201 (385)
Q Consensus 123 ~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~l~~~~~~~~~~~~~~~~~l 201 (385)
.+.|+..||..|+.||+++|++++|||....... .+.++....... .+......++....+.. ... .+..
T Consensus 88 ~~~~~~~~~~~H~~HH~~~~~~~~Dpd~~~~~~~------~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~--~~~-~~~~ 158 (285)
T cd03511 88 ILLPPDFFRWSHARHHRYTQIPGRDPELAVPRPP------TLREYLLALSGLPYWWGKLRTVFRHAFGAV--SEA-EKPF 158 (285)
T ss_pred hcCChHHHHHHHHHHhcCcCCCCCCCCCCCCCch------HHHHHHHHHhChHHHHHHHHHHHHHHhccc--ccc-cCCC
Confidence 9999999999999999999999999997421111 111111110000 00010000110000100 000 1122
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccceehhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccccc
Q 016642 202 FSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGG 281 (385)
Q Consensus 202 ~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~lvP~l~~~~~l~~~~~l~H~~~~d~~~p~~~~~~w~~~~~~ 281 (385)
..++++.++..+..+++++++++++++...|.+.++++|++|++++..++.+++++||.++ +++. + + .+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~wllP~l~~~~~~~~~~~~eH~~~-~~~~-----~--~-~~~t 229 (285)
T cd03511 159 IPAEERPKVVREARAMLAVYAGLIALSLYLGSPLLVLVWGLPLLLGQPILRLFLLAEHGGC-PEDA-----N--D-LRNT 229 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-Cccc-----c--h-hhhh
Confidence 2234455666666666555555555555678777888999999998888999999999976 2111 1 1 2222
Q ss_pred eeeeecccchhhhhhcccccchhhhhcCCCCCCCHHHHHHHhchhhhhcc
Q 016642 282 LTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLGKYY 331 (385)
Q Consensus 282 ~~Tv~~~~~~l~~l~~~i~yH~~HHlfP~iP~y~Lp~a~~~lk~~~~~~y 331 (385)
+|+..+ +|++++++|+|||+|||++|+||+|+||++|+.+|+.+++.+
T Consensus 230 -rs~~~~-~~~~~l~~n~nyH~eHHl~P~vP~y~Lp~~h~~L~~~~~~~~ 277 (285)
T cd03511 230 -RTTLTN-PPLRFLYWNMPYHAEHHMYPSVPFHALPKLHELIKDDLPVPY 277 (285)
T ss_pred -hhhhhh-HHHHHHHcCCchHHHHhcCCCCcHhHHHHHHHHHHHhCCCCC
Confidence 232222 578999999999999999999999999999999999988653
No 7
>PLN03198 delta6-acyl-lipid desaturase; Provisional
Probab=100.00 E-value=1.6e-36 Score=305.84 Aligned_cols=304 Identities=17% Similarity=0.216 Sum_probs=193.1
Q ss_pred CHHHHHHhcc-ccccccCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccccCccccCCch
Q 016642 32 KIGEIRAAIP-KHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPL 110 (385)
Q Consensus 32 ~~~~ir~~ip-~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~G~~~~~l~~l~Hd~~H~s~~~~~~ 110 (385)
.++++|+.+- +.+|++++......++..++++++++++.+...+++...+.++++|+++.++++++|||+|++++++++
T Consensus 188 dy~~Lr~~~~~~G~fk~~~~~y~~~l~~~i~l~a~~~~~~~~~~~~~~~ll~a~llgl~~~q~g~l~HD~~H~s~~~~~~ 267 (526)
T PLN03198 188 DFRDLRALFLREQLFKSSKLYYVFKLLTNIAIFAASIAIICCSKSISAVLASACMMALCFQQCGWLSHDFLHNQVFETRW 267 (526)
T ss_pred hHHHHHHHHHhccccccCcceeHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcH
Confidence 4779998865 579999998877777766666655554443333333345556788999999999999999999999999
Q ss_pred hhHHHHHHHHh-hccCchhhhhhhhhhhccCCCCCC-----CCCccCCCcHHhhh-----cC--CcccchhHhhhhhhHH
Q 016642 111 LNSFVGHILHS-SILVPYNGWRISHRTHHQNHGNVE-----HDESWVPMPEKIYS-----KL--DSSTRILRFSLPLPML 177 (385)
Q Consensus 111 ~N~~vG~i~~~-~~~~p~~~wr~~H~~HH~~tn~~~-----~Dpd~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~ 177 (385)
+|+++|.+++. ++|.|+.+||..|+.||.+||..+ .|||+...+...+. .. ..+.++.+++. .+
T Consensus 268 ~n~~~g~~~~~~~~G~s~~~W~~~Hn~HH~~tN~~~~~~~~~DpDI~~~pl~~~~~~~~~~~~~~~~~~~~~yQh---~~ 344 (526)
T PLN03198 268 LNEVVGYLIGNAVLGFSTGWWKEKHNLHHAAPNECDQLYQPIDEDIDTLPLIAWSKDILATVENKTFLRILQYQH---LF 344 (526)
T ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHhccCCCCCCccCCCCCCCcCccceeEechhhhhcchhhhHHHHHhhhh---HH
Confidence 99999999765 579999999999999999999887 79998644311111 00 01112222332 33
Q ss_pred HHHHHHHHhcCCC-CcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHH-HHHHHhccccceehhhhhHHHHHHHHHHHH
Q 016642 178 AYPAYLWYRSPGK-DGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLV-YLSFVFGPITMFKLYGVPYLIFVMWLDFVT 255 (385)
Q Consensus 178 ~~p~~l~~~~~~~-~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~-~~~~~~g~~~~l~~~lvP~l~~~~~l~~~~ 255 (385)
++|++.+.+.... ....+..... ..++++ +...+..++.++..+ ..+...+.+..+++++++.++.+.++.+++
T Consensus 345 f~~ll~l~~~~~~~~s~~~~~~~~-~~~~~~---~~e~~~~l~~~~~~~~l~l~~~~~~~~l~~~~l~~~~~g~~l~~vF 420 (526)
T PLN03198 345 FMALLFFARGSWLFWSWRYTSTAK-LAPADR---LLEKGTILFHYFWFIGTACYLLPGWKPLVWMAVTELMCGMLLGFVF 420 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-cchHHH---HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhh
Confidence 3343322111000 0000000000 011112 122222222222221 222334555556677788888999999999
Q ss_pred HhhcCCCCCCCCCCCCCCcccccccce-eeeeccc-chhhhhhcccccchhhhhcCCCCCCCHHHHHHHhchhhhhcccc
Q 016642 256 YLHHHGDDEHKLPWYRGKEWNYLRGGL-TTVDRDY-GIFNNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLGKYYRE 333 (385)
Q Consensus 256 ~l~H~~~~d~~~p~~~~~~w~~~~~~~-~Tv~~~~-~~l~~l~~~i~yH~~HHlfP~iP~y~Lp~a~~~lk~~~~~~y~~ 333 (385)
+++|.++ +++. .++ +|.+.|+ +|.|... .|++|++||+|||+||||||+||++|||++++.+|+.|.|+-..
T Consensus 421 ~lnH~~~---~v~~-~~~--dw~~~Qv~tT~n~~~~~~~~wf~GGLN~QiEHHLFP~iP~~~l~~i~piVk~~C~k~Glp 494 (526)
T PLN03198 421 VLSHNGM---EVYN-KSK--EFVNAQIVSTRDIKANIFNDWFTGGLNRQIEHHLFPTMPRHNLNKIAPQVEAFCIKHGLV 494 (526)
T ss_pred hccccCC---CCCC-CCc--CHHHHHHhcCcCcCCchHHHHhhcCCcccchhhcCCCCchhhHHHHhHHHHHHHHHcCCC
Confidence 9999976 3332 223 5577666 3444433 47899999999999999999999999999999999888887222
Q ss_pred CCCCCCChHHHHHHHHHHhc
Q 016642 334 PNKSGPIPVHLIKNLVKSIG 353 (385)
Q Consensus 334 ~~~~~~~~~~~~~~l~~~~~ 353 (385)
+... + ++.++.+.++
T Consensus 495 Y~~~-~----~~~a~~~~l~ 509 (526)
T PLN03198 495 YEDV-S----IAAGTCKVLK 509 (526)
T ss_pred CCCC-C----HHHHHHHHHH
Confidence 2111 2 5566655554
No 8
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=100.00 E-value=1.3e-35 Score=298.66 Aligned_cols=293 Identities=15% Similarity=0.134 Sum_probs=186.9
Q ss_pred HHHHHHhcc-ccccccCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccccCccccCCchh
Q 016642 33 IGEIRAAIP-KHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLL 111 (385)
Q Consensus 33 ~~~ir~~ip-~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~G~~~~~l~~l~Hd~~H~s~~~~~~~ 111 (385)
++++++.+. +.+|++++......++..++++++++++..+.+++++..++++++|+.+.+++.++|||+|+++++++++
T Consensus 114 y~~L~~~v~~~g~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aillg~~~~~~g~l~HDa~H~~~~~~~~~ 193 (485)
T PLN03199 114 YRDLRAKLIMMGMFKSNKMFYAYKCLFNMAIWAAACALVFYSDRFAMHIASALLLGLFFQQCGWLAHDFLHHQVFKKRKH 193 (485)
T ss_pred HHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhCCchH
Confidence 678999996 3799999877766666666666665555444455555666778899999999999999999999999999
Q ss_pred hHHHHHHHHh-hccCchhhhhhhhhhhccCCCC-------CCCCCccCCCc-----HH---hhhcC---CcccchhHhhh
Q 016642 112 NSFVGHILHS-SILVPYNGWRISHRTHHQNHGN-------VEHDESWVPMP-----EK---IYSKL---DSSTRILRFSL 172 (385)
Q Consensus 112 N~~vG~i~~~-~~~~p~~~wr~~H~~HH~~tn~-------~~~Dpd~~~~~-----~~---~~~~~---~~~~~~~~~~~ 172 (385)
|+++|.+++. +.|.|..+|+..|+.||.+||. .+.|||+...+ +. .++.. .....+.++..
T Consensus 194 N~~~g~~~g~l~~G~S~~wW~~~Hn~HH~~tN~~~~~~~~~~~DPDI~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (485)
T PLN03199 194 GDLGGIFWGDLMQGFSMQWWKNKHNGHHAVPNLHCSSADAQDGDPDIDTMPLLAWSLKQAQSFREINADGKDSGFVKFAI 273 (485)
T ss_pred HHHHHHHHHHhccCCChHHHHHHHhhhhcCcCcCccccCCCCCCCCCCCCceeeecHHHhhhHhhhhhhccccchhhHHH
Confidence 9999988765 5899999999999999999997 46899985221 11 11110 00111212211
Q ss_pred -hhhHHHHHHHHHHhcC----------CCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH-HH--hcccccee
Q 016642 173 -PLPMLAYPAYLWYRSP----------GKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLS-FV--FGPITMFK 238 (385)
Q Consensus 173 -~~~~~~~p~~l~~~~~----------~~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~-~~--~g~~~~l~ 238 (385)
.|.++++|++.+.+.. ......... .....++.........++.++.++..+.+. .. .+++..+.
T Consensus 274 ~~Qh~~~~p~l~l~~l~w~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~~~~~~lp~~~~~~~~~~~l~ 352 (485)
T PLN03199 274 KFQAFFYFPILLLARISWLNESFKCAFGLGAASENA-ALELEAKGLQYPLLEKAGILLHYAWMFTLSSGFGRFSFAYSAF 352 (485)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 2334455544321110 000000000 000111222222233333333332222221 11 33444556
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccccce-eeeeccc------chhhhhhcccccchhhhhcCCC
Q 016642 239 LYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGL-TTVDRDY------GIFNNIHHDIGTHVIHHLFPQI 311 (385)
Q Consensus 239 ~~lvP~l~~~~~l~~~~~l~H~~~~d~~~p~~~~~~w~~~~~~~-~Tv~~~~------~~l~~l~~~i~yH~~HHlfP~i 311 (385)
++++..++.+.++.+++.++|.++ +++. ++..-++.+.|+ +|.|.+. .|++|++||+|||+||||||+|
T Consensus 353 ~~~~~~~~~g~~l~~~f~l~H~~~---~~~~-~~~~~d~~~~Qv~TT~n~~~~~~~~s~~~~wf~GGLN~QIEHHLFP~m 428 (485)
T PLN03199 353 YFFTATASCGFFLAIVFGLGHNGM---ATYD-ADARPDFWKLQVTTTRNIIGGHGFPQAFVDWFCGGLQYQVDHHLFPML 428 (485)
T ss_pred HHHHHHHHHhhHheEEEecCCccc---cccC-CCCCccHHHHHHHhccCccCCCCCcchHHHHHhccchhhhhhhcCCCC
Confidence 778888888999999999999976 2221 122224556665 4555531 3889999999999999999999
Q ss_pred CCCCHHHHHHHhchhhhhc
Q 016642 312 PHYHLVEATKAAKPVLGKY 330 (385)
Q Consensus 312 P~y~Lp~a~~~lk~~~~~~ 330 (385)
|++|||++.+.+|+.|.|+
T Consensus 429 p~~~y~~i~piVk~~C~k~ 447 (485)
T PLN03199 429 PRHNIAKCHALVESFCKEW 447 (485)
T ss_pred chhhHHhhhHHHHHHHHHh
Confidence 9999999998888888877
No 9
>cd03506 Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes: delta-4, delta-5, delta-6, delta-8, delta-8-sphingolipid, and delta-11 desaturases found in vertebrates, higher plants, fungi, and bacteria. These desaturases are required for the synthesis of highly unsaturated fatty acids (HUFAs), which are mainly esterified into phospholipids and contribute to maintaining membrane fluidity. While HUFAs may be required for cold tolerance in bacteria, plants and fish, the primary role of HUFAs in mammals is cell signaling. These enzymes are described as front-end desaturases because they introduce a double bond between the pre-exiting double bond and the carboxyl (front) end of the fatty acid. Various substrates are involved, with both acyl-coenzyme A (CoA) and acyl-lipid desaturases present in this CD. Acyl-lipid desaturases are localized in the membranes of cyanobacterial thylakoid, plant endoplasmic reticulum (ER), and plastid; an
Probab=100.00 E-value=4.3e-36 Score=270.92 Aligned_cols=197 Identities=21% Similarity=0.248 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHHhhhccccCccccCCchhhHHHHHHHHhhccCchhhhhhhhhhhccCCCCCCCCCccCCCcHHhhhcC
Q 016642 82 YWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKIYSKL 161 (385)
Q Consensus 82 ~~~~~G~~~~~l~~l~Hd~~H~s~~~~~~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~~ 161 (385)
+++++|+.+.+++.++|||+|+++++++++|+++|.+++.+.|.|+..||.+|+.||++||+.++|||+.+.+...+..
T Consensus 3 ~ai~~g~~~~~~~~~~Hd~~H~~~~~~~~~n~~~g~~~~~~~g~s~~~w~~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~- 81 (204)
T cd03506 3 LAILLGLFWAQGGFLAHDAGHGQVFKNRWLNKLLGLTVGNLLGASAGWWKNKHNVHHAYTNILGHDPDIDTLPLLARSE- 81 (204)
T ss_pred HHHHHHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHhccCCCHHHHHHHHhhhcCcCCCCCCCCCCCcCceEEecc-
Confidence 3466788888899999999999999999999999999999999999999999999999999999999986432211100
Q ss_pred CcccchhHhhhhhhHHHHHHHHHHhcCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccceehhh
Q 016642 162 DSSTRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYG 241 (385)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~l 241 (385)
+.. . .++..+........ ++..++.+. +.+|+
T Consensus 82 ----~~~---------------~-----------------~~~~~~~~~~~q~~----~~~~~~~~~--------~~~~~ 113 (204)
T cd03506 82 ----PAF---------------G-----------------KDQKKRFLHRYQHF----YFFPLLALL--------LLAFL 113 (204)
T ss_pred ----ccc---------------c-----------------cchHHHHHHHHHHH----HHHHHHHHH--------HHHHH
Confidence 000 0 00000111101110 000011110 55789
Q ss_pred hhHHHHHHHHHHHHHhhcCCCCCCCCCCC-CCCcccccccce-eeeeccc-chhhhhhcccccchhhhhcCCCCCCCHHH
Q 016642 242 VPYLIFVMWLDFVTYLHHHGDDEHKLPWY-RGKEWNYLRGGL-TTVDRDY-GIFNNIHHDIGTHVIHHLFPQIPHYHLVE 318 (385)
Q Consensus 242 vP~l~~~~~l~~~~~l~H~~~~d~~~p~~-~~~~w~~~~~~~-~Tv~~~~-~~l~~l~~~i~yH~~HHlfP~iP~y~Lp~ 318 (385)
+|.++++.+++++++++|..+ +++++ ++++|++.+.|+ +|+|... +|++|+++|+|||+||||||+||+++||+
T Consensus 114 ~~~~~~~~~l~~~~~~~H~~~---~~~~~~~~~~~~w~~~q~~tt~~~~~~~~~~~l~ggln~qieHHLfP~ip~~~l~~ 190 (204)
T cd03506 114 VVQLAGGLWLAVVFQLNHFGM---PVEDPPGESKNDWLERQVLTTRNITGSPFLDWLHGGLNYQIEHHLFPTMPRHNYPK 190 (204)
T ss_pred HHHHHHhhhhheEeecccccc---cccCCCCCcccCHHHHHHhCcccCCCCCHHHHHhcchhhHHHHhcCCCchhhhHHH
Confidence 999999999999999999975 45554 456678877776 4666654 58999999999999999999999999999
Q ss_pred HHHHhchhhhhc
Q 016642 319 ATKAAKPVLGKY 330 (385)
Q Consensus 319 a~~~lk~~~~~~ 330 (385)
+++.+|+.++|+
T Consensus 191 ~~~~v~~~~~~~ 202 (204)
T cd03506 191 VAPLVRELCKKH 202 (204)
T ss_pred HHHHHHHHHHHh
Confidence 999999988875
No 10
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=100.00 E-value=6.4e-34 Score=256.50 Aligned_cols=184 Identities=23% Similarity=0.366 Sum_probs=136.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccCccccCCchhhHHHHHHHHhhccCchhhhhhhhhhhccCCCCCCCCCccCCCc
Q 016642 75 TWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMP 154 (385)
Q Consensus 75 ~w~~~~l~~~~~G~~~~~l~~l~Hd~~H~s~~~~~~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~~~~ 154 (385)
+|+..++.+++.|+.+.++++++|||+|++++++|++|+++|.+++.+.+.|+..||.+|+.||+++|+.++|||..
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~~~~~~~DpD~~--- 96 (207)
T cd03514 20 SYLPLWVCFILNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAHTNDPEKDPDHF--- 96 (207)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcCcCcCCcCccHH---
Confidence 45555666677888889999999999999999999999999999998899999999999999999999988999963
Q ss_pred HHhhhcCCcccchhHhhhhhhHHHHHHHHHHhcCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 016642 155 EKIYSKLDSSTRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPI 234 (385)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~~ 234 (385)
+... . +.. . .+++... ......+.+
T Consensus 97 ------------~~~~-------------~-------------------------~~~-~-~~~~~~~---~~~~~~~~~ 121 (207)
T cd03514 97 ------------LLEW-------------L-------------------------VAR-S-LFITLLV---IAILFGFLW 121 (207)
T ss_pred ------------HHHH-------------H-------------------------HHH-H-HHHHHHH---HHHHHHHHH
Confidence 0000 0 000 0 0111111 111123444
Q ss_pred cceehhhhhHHHHHHHHHH-HHHhhcCCCCCCCCCCCCCCcccccccceeeeecccchhhhhhcccccchhhhhcCCCCC
Q 016642 235 TMFKLYGVPYLIFVMWLDF-VTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPH 313 (385)
Q Consensus 235 ~~l~~~lvP~l~~~~~l~~-~~~l~H~~~~d~~~p~~~~~~w~~~~~~~~Tv~~~~~~l~~l~~~i~yH~~HHlfP~iP~ 313 (385)
.++++|++|.++.+.++.+ .++++|.+. + ++++|+..+ .....+++++++|+|||.|||+||+||+
T Consensus 122 ~~~l~~~iP~l~~~~~l~~~~~~~~H~~~-~------~~~~~~~~~------~~~~~l~~~l~~~~nyH~~HHL~P~IP~ 188 (207)
T cd03514 122 ELLNLWFLPALIVGTYLALFFDWLPHHPF-E------ETQRWDNSR------VYPSKLLNPLIMGQNYHLVHHLWPSIPW 188 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeCccCC-C------Cccchhhhh------cccchhHheeecCCchhHHHhCCCCCch
Confidence 6677899999999999986 568899854 2 123443311 1111466999999999999999999999
Q ss_pred CCHHHHHHHhchhhhh
Q 016642 314 YHLVEATKAAKPVLGK 329 (385)
Q Consensus 314 y~Lp~a~~~lk~~~~~ 329 (385)
||||++++++|+.+.+
T Consensus 189 y~Lp~a~~~~~~~~~~ 204 (207)
T cd03514 189 YRYPEAYYANKPLLDA 204 (207)
T ss_pred hhhHHHHHHhHHHHhh
Confidence 9999999999988754
No 11
>PLN02579 sphingolipid delta-4 desaturase
Probab=100.00 E-value=7.8e-33 Score=263.20 Aligned_cols=286 Identities=20% Similarity=0.237 Sum_probs=170.3
Q ss_pred CcccccCCCCCCCCCCCCC-HHHHHHhccc--cccccCcchHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHH-HHHHHH
Q 016642 14 NGVVEKGDSFDPAAPPPFK-IGEIRAAIPK--HCWVKNPWRSLSYVLRDLLVVLALLAAATH--FNTWFFWPL-YWVAQG 87 (385)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~-~~~ir~~ip~--~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~w~~~~l-~~~~~G 87 (385)
+.++++|+.+...++|.-+ .++|.++.|+ +++.+++.....-++..++.+ ++++. ..+|+..++ ++++.|
T Consensus 7 ~~~~~~~f~w~~~~~~h~~rr~~il~~ype~~~l~~~d~~~~~k~~~~v~~~~----~~~~l~~~~~w~~~l~~a~~~~g 82 (323)
T PLN02579 7 EGVMATDFFWSYTDEPHASRRREILSKYPQIKELFGPDPWAFPKIAAVVLLQL----CTATLLHDAGWPKILLVAYFFGG 82 (323)
T ss_pred ccCCccceeECCchhhHHHHHHHHHHhchHhhcccCCCchHHHHHHHHHHHHH----HHHHHHccCCHHHHHHHHHHHHH
Confidence 4567899999999776433 3355566674 467666654433222222222 22222 246765555 456677
Q ss_pred HHHHHHHhhhccccCccccCCchhhHHHHHHHHhhccCchh-hhhhhhhhhccCCCCCCCCCccCCCcHHhhhcCCcccc
Q 016642 88 TMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYN-GWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTR 166 (385)
Q Consensus 88 ~~~~~l~~l~Hd~~H~s~~~~~~~N~~vG~i~~~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~~~~~~~ 166 (385)
+...++++++|||+|+++|+++++|+++|.+++.++|.|+. +||..|+.||+++|+.+.|||+.+.. ++ +
T Consensus 83 ~~~~~lf~~~HD~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~~n~~~~D~Di~t~~--E~-------~ 153 (323)
T PLN02579 83 FLNHNLFLAIHELSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRFQGVDGIDMDIPSQG--EA-------R 153 (323)
T ss_pred HHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccCCCCCCCCCCCCchh--hH-------H
Confidence 77788999999999999999999999999999888999998 79999999999999988999975322 22 1
Q ss_pred hhHhhh-hhhH-HHHHHHHHHhcCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccceehhhhhH
Q 016642 167 ILRFSL-PLPM-LAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPY 244 (385)
Q Consensus 167 ~~~~~~-~~~~-~~~p~~l~~~~~~~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~lvP~ 244 (385)
+.+... ...+ +..|+++..| +.. +.+ .+..+..+ .+.++.+++. +++++..|+..++ +.++|.
T Consensus 154 l~~~~~~~~~~~~~~~~f~~~r-p~~----~~~-----~~~~~~~~-in~~~~~~~~---~~l~~~~G~~~ll-yl~~~~ 218 (323)
T PLN02579 154 LVRNTLSKIVWVFLQLFFYALR-PLF----VNP-----KPPGLWEF-INLLTQIAFD---AALVYFAGWKSLA-YLILST 218 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh-HHh----hcc-----CCchHHHH-HHHHHHHHHH---HHHHHHHCHHHHH-HHHHHH
Confidence 111100 0001 1223332222 110 001 11122222 3333322222 2334455765543 122222
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccccceeeeecccchhhhhhcccccchhhhhcCCCCCCCHHHHHHHhc
Q 016642 245 LIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVEATKAAK 324 (385)
Q Consensus 245 l~~~~~l~~~~~l~H~~~~d~~~p~~~~~~w~~~~~~~~Tv~~~~~~l~~l~~~i~yH~~HHlfP~iP~y~Lp~a~~~lk 324 (385)
++ + .|. +|..++...++|....++. |.+. +|++||+++|+|||.|||+||+||+|+||++ +
T Consensus 219 ~~-~---------~~l---hp~~g~~~~ehy~~~~~~e-tysy-yg~ln~l~~NigYH~eHH~fP~IP~~~Lp~l----~ 279 (323)
T PLN02579 219 FL-G---------GGL---HPMAGHFISEHYVFNPGQE-TYSY-YGPLNLLTWNVGYHNEHHDFPRIPGSKLHKV----K 279 (323)
T ss_pred HH-h---------ccc---ccccceeeccceeccCCCC-ceee-hhHHHHHhhcccccHhhcCCCCCchhhHHHH----H
Confidence 11 1 122 2344444445554444433 4322 3899999999999999999999999999998 5
Q ss_pred hhhhhccccCCCCCCChHHHHH
Q 016642 325 PVLGKYYREPNKSGPIPVHLIK 346 (385)
Q Consensus 325 ~~~~~~y~~~~~~~~~~~~~~~ 346 (385)
++.+++|+....-+++.+.+++
T Consensus 280 ~~~pe~y~~l~~~~sw~~~~~~ 301 (323)
T PLN02579 280 EIAPEYYDNLKSYKSWSQVIYM 301 (323)
T ss_pred HhCHHHHhCCCCcCcHHHHHHH
Confidence 5778888866544454443333
No 12
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=100.00 E-value=4e-32 Score=255.35 Aligned_cols=247 Identities=21% Similarity=0.258 Sum_probs=153.9
Q ss_pred ccccccCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHhhhccccCccccCCchhhHHHHHHHH
Q 016642 42 KHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFW-PLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILH 120 (385)
Q Consensus 42 ~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~-~l~~~~~G~~~~~l~~l~Hd~~H~s~~~~~~~N~~vG~i~~ 120 (385)
+++|++++......++..++.++++.++. ..+|+.. ++++++.|+.+.++++++|||+|+++++++++|+++|.+++
T Consensus 9 ~~L~~~~~~~~~~~~~~v~~~~~~~~~l~--~~sw~~~ll~a~vi~~~~~~~l~~l~Hd~~H~~~f~~~~~N~~~g~~~~ 86 (289)
T cd03508 9 KKLFGPDPLTKWVVLGVVLLQIITAYLLR--DSSWWKILLVAYFFGGTINHSLFLAIHEISHNLAFGKPLWNRLFGIFAN 86 (289)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCChHHHHHHHHHHH
Confidence 47889999988777777777666644332 3355444 44556677777899999999999999999999999999998
Q ss_pred hhccCchh-hhhhhhhhhccCCCCCCCCCccCCCcHHhhhcCCcccchhHhhhhhhH--HHHHHHHHHhcCCCCcccccC
Q 016642 121 SSILVPYN-GWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPLPM--LAYPAYLWYRSPGKDGSHFNP 197 (385)
Q Consensus 121 ~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~l~~~~~~~~~~~~~~ 197 (385)
.+.+.|+. +||..|+.||+++|+.+.|||+.+..+. ++.+....... ..++++...| +... .
T Consensus 87 ~~~g~p~~~~~r~~H~~HH~~~n~~~~DpDi~~~~~~---------~l~~~~~g~~~~~~~~~~~~~~r-p~~~----~- 151 (289)
T cd03508 87 LPIGVPYSISFKKYHLEHHRYLGEDGLDTDIPTEFEG---------KLFSTVLGKAIWVTLQPFFYALR-PLFV----R- 151 (289)
T ss_pred HHhcCChhhHHHHHHHHhccCCCCCCCCCCcchHHHH---------HHHhCchHHHHHHHHHHHHHHhc-cccc----C-
Confidence 89999998 5999999999999998899998652211 11111110101 1123222222 1110 0
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccceehhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccc
Q 016642 198 YSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNY 277 (385)
Q Consensus 198 ~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~lvP~l~~~~~l~~~~~l~H~~~~d~~~p~~~~~~w~~ 277 (385)
.++..+.. +.+.+..+++.++ +....|++.++ |+++..+.+.. -| |..++...|+|+.
T Consensus 152 ----~~~~~~~~-~~n~~~~~~~~~~---l~~~~G~~~~l--yll~~~~~~~~-------~~-----p~~g~~i~Eh~~~ 209 (289)
T cd03508 152 ----PKPPTRLE-VINIVVQITFDYL---IYYFFGWKSLA--YLLLGSFLGGG-------LH-----PLAGHFISEHYVF 209 (289)
T ss_pred ----CCcchhHH-HHHHHHHHHHHHH---HHHHhCcHHHH--HHHHHHHHHHh-------hc-----ccccccccccccc
Confidence 01111222 2222222333222 23456776543 45444433221 11 2344444566655
Q ss_pred cccceeeeecccchhhhhhcccccchhhhhcCCCCCCCHHHHHHHhchhhh
Q 016642 278 LRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLG 328 (385)
Q Consensus 278 ~~~~~~Tv~~~~~~l~~l~~~i~yH~~HHlfP~iP~y~Lp~a~~~lk~~~~ 328 (385)
......|.+. ++++|++++|+|||.|||++|+||+|+||++++..++...
T Consensus 210 ~~~~~~t~S~-y~~~~~~~~n~~yH~~HH~~p~iP~~~Lp~~~~~~~~~~~ 259 (289)
T cd03508 210 TGKGQETYSY-YGPLNLLTFNVGYHNEHHDFPYIPGTRLPKLRKIAPEFYD 259 (289)
T ss_pred cccCcCCccc-hHHHHHHhhccChHHHhcCCCCCCcccHHHHHHHCHHHHh
Confidence 4322223222 3889999999999999999999999999999987554443
No 13
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.98 E-value=2e-31 Score=251.17 Aligned_cols=221 Identities=20% Similarity=0.239 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHhhhccccCccccCCchhhHHHHHHHHhhccCchhhhhhhhhhhccCCC--CCCCCCccCCCcHHhhh
Q 016642 82 YWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHG--NVEHDESWVPMPEKIYS 159 (385)
Q Consensus 82 ~~~~~G~~~~~l~~l~Hd~~H~s~~~~~~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn--~~~~Dpd~~~~~~~~~~ 159 (385)
+.+++|......++++|||+|+++++++++|+++|.++ ..++.|+..||.+|+.||++|| +.++|||....++.+++
T Consensus 30 ~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~-~~l~~p~~~wr~~H~~HH~~~nl~~~~~Dpd~~~~~~~~~~ 108 (288)
T cd03509 30 ATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPP-LALWYPYTRYRDTHLAHHRDEDLTDPGDDPESNYLSPEQWA 108 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHH-HHHhcCHHHHHHHHHHHcCCCCCCCCCCCCccceecHHHHh
Confidence 34566777777789999999999999999999999875 3456899999999999999999 44689998777777787
Q ss_pred cCCcccchhH--hhhhhhHH-HHHHHHHHhcCCCCcccccCCCCCCCcchhH--HHHHHHHHHHHHHHHHHHHHHHhccc
Q 016642 160 KLDSSTRILR--FSLPLPML-AYPAYLWYRSPGKDGSHFNPYSSLFSPGERK--AVVISTACWTFMFGLLVYLSFVFGPI 234 (385)
Q Consensus 160 ~~~~~~~~~~--~~~~~~~~-~~p~~l~~~~~~~~~~~~~~~~~l~~~~~r~--~v~~~~~~~~~~~~~l~~~~~~~g~~ 234 (385)
+++.+++... ++.....+ ..|.+.+..... ++. ..+.++++. +++...+..++ +.++.+....|+
T Consensus 109 ~~~~~~r~~~~~~~~~~~~~l~gp~l~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~- 178 (288)
T cd03509 109 RLPRWQRALLRANNTLLGRLILGPPLGLIAFAR------DEF-RALRAGDRAALRAWLLHAALLA--PLLAWLQLSAGI- 178 (288)
T ss_pred hCcHHHHHHHHHhhcchhHHhhhhHHHHHHHHH------HHH-HHhccccHHHHHHHHHHHHHHH--HHHHHHHHHhhH-
Confidence 7665544322 12222222 224322211000 000 111222222 22222211111 111111112232
Q ss_pred cceehhhhhHHHH-HHHHHHHHHhhcCCCCCCCCCCCCCCccccccccee-eeecccchhhhhhcccccchhhhhcCCCC
Q 016642 235 TMFKLYGVPYLIF-VMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGLT-TVDRDYGIFNNIHHDIGTHVIHHLFPQIP 312 (385)
Q Consensus 235 ~~l~~~lvP~l~~-~~~l~~~~~l~H~~~~d~~~p~~~~~~w~~~~~~~~-Tv~~~~~~l~~l~~~i~yH~~HHlfP~iP 312 (385)
.. ++|++|.... .....+.++.||.+. ..+ . +.+ +++.+ ++++++++|+|||+|||++|+||
T Consensus 179 ~~-~~~~l~~~~la~~~~~~~~~~Eh~~~---~~~---------~--~rs~~~~~~-~~~~~l~~ninyH~~HH~~P~vP 242 (288)
T cd03509 179 PW-WAYLLAVYYPALSLAKIRTFLEHRAH---ERP---------R--GRTVINEAG-GPLRLLFLNNNLHVVHHDLPTLP 242 (288)
T ss_pred HH-HHHHHHHHHHHHHHHhhchHhhccCC---CCc---------c--CCceeeeCc-HHHHHHHhcCCchHhhcCCCCCC
Confidence 22 2334555444 444555678899854 111 1 112 22332 56899999999999999999999
Q ss_pred CCCHHHHHHHhchhhhh
Q 016642 313 HYHLVEATKAAKPVLGK 329 (385)
Q Consensus 313 ~y~Lp~a~~~lk~~~~~ 329 (385)
+|+||++|+.+++.+.+
T Consensus 243 ~y~Lp~~h~~~~~~~~~ 259 (288)
T cd03509 243 WYDLPRLYRARRDAYLR 259 (288)
T ss_pred cccHHHHHHHhHHHHhh
Confidence 99999999999988765
No 14
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=99.97 E-value=1.3e-31 Score=235.16 Aligned_cols=170 Identities=29% Similarity=0.451 Sum_probs=130.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccccCccccCCchhhHHHHHHH-HhhccCchhhhhhhhhhh
Q 016642 59 DLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHIL-HSSILVPYNGWRISHRTH 137 (385)
Q Consensus 59 ~~~~~~~~~~~~~~~~~w~~~~l~~~~~G~~~~~l~~l~Hd~~H~s~~~~~~~N~~vG~i~-~~~~~~p~~~wr~~H~~H 137 (385)
|+++|+++++++.+.++|++++++++++|.++.++++++|||+|+++++++++|+++|.++ +.+++.|+..||..|+.|
T Consensus 1 ~w~~i~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~Hea~H~~l~~~~~~N~~~g~~~~~~p~~~~~~~~r~~H~~H 80 (175)
T cd03510 1 DWLVIAAAVALALAWPNWLAYLLAVLLIGARQRALAILMHDAAHGLLFRNRRLNDFLGNWLAAVPIFQSLAAYRRSHLKH 80 (175)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHhhhhCCHHHHHHHHHHH
Confidence 3566777777777778888888888999999999999999999999999999999999765 568999999999999999
Q ss_pred ccCCCCCCCCCccCCCcHHhhhcCCcccchhHhhhhhhHHHHHHHHHHhcCCCCcccccCCCCCCCcchhHHHHHHHHHH
Q 016642 138 HQNHGNVEHDESWVPMPEKIYSKLDSSTRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACW 217 (385)
Q Consensus 138 H~~tn~~~~Dpd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~l~~~~~r~~v~~~~~~~ 217 (385)
|+++|+ ++|||..
T Consensus 81 H~~~~~-~~Dpd~~------------------------------------------------------------------ 93 (175)
T cd03510 81 HRHLGT-EDDPDLA------------------------------------------------------------------ 93 (175)
T ss_pred hCccCC-CCCCcHH------------------------------------------------------------------
Confidence 999997 8999841
Q ss_pred HHHHHHHHHHHHHhccccceehhhhhHHHHHHHHH-HHHHhhcCCCCCCCCCCCCCCcccccccceeeeecccchhh-hh
Q 016642 218 TFMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLD-FVTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFN-NI 295 (385)
Q Consensus 218 ~~~~~~l~~~~~~~g~~~~l~~~lvP~l~~~~~l~-~~~~l~H~~~~d~~~p~~~~~~w~~~~~~~~Tv~~~~~~l~-~l 295 (385)
.++++|++|.++....+. +.++.+|.+. +++. +. + .+.+ +|+ ..+|++ ++
T Consensus 94 -----------------~~~~~W~~P~~~~~~~~~~~~~~~eH~~~-~~~~-----~~-~-~~~t-r~~--~~~~~~r~l 145 (175)
T cd03510 94 -----------------LYLLLWLVPLLTVFPLIGRIREIAEHAGV-PADE-----DP-D-ARNT-RTT--FGGWIERLL 145 (175)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHhccCC-CCCC-----cc-h-hhcC-ccc--cccHHHHHH
Confidence 113356777777766444 4568899976 2111 10 0 1122 232 235554 55
Q ss_pred h--cccccchhhhhcCCCCCCCHHHHHHHh
Q 016642 296 H--HDIGTHVIHHLFPQIPHYHLVEATKAA 323 (385)
Q Consensus 296 ~--~~i~yH~~HHlfP~iP~y~Lp~a~~~l 323 (385)
. .|+|||.|||++|+||+|+||++|+.+
T Consensus 146 ~~p~~~~YH~eHHl~P~vP~~~Lp~~h~~l 175 (175)
T cd03510 146 FAPHNINYHLEHHLFPAVPFYNLPKAHRIL 175 (175)
T ss_pred HcccCCcHHHHHhCCcCCchhhHHHHHHhC
Confidence 4 599999999999999999999999764
No 15
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=99.97 E-value=4.8e-31 Score=243.65 Aligned_cols=245 Identities=27% Similarity=0.414 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCccccCCchhhHHHHHHHHhhccCchhhhhhhhhhhccCCCCCCCCCccCCCcH
Q 016642 76 WFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPE 155 (385)
Q Consensus 76 w~~~~l~~~~~G~~~~~l~~l~Hd~~H~s~~~~~~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~~~~~ 155 (385)
|+.+++++++.|..+.+++.++|||+|+++++++++|+++|.+++.+.+.|+..||..|+.||+++|+.++|||..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~~~~~~~Dpd~~~~~~ 82 (257)
T PF00487_consen 3 WWWWLLALLLLGLSFARLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHYTNNPDRDPDSWTRRL 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccccCCccccCccchhhh
Confidence 44456666788888899999999999999999999999999999999999999999999999999999888999764311
Q ss_pred HhhhcCCcccchhHhhhhh--hHHHHHHHHHHhcCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 016642 156 KIYSKLDSSTRILRFSLPL--PMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGP 233 (385)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~--~~~~~p~~l~~~~~~~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~ 233 (385)
.............+..... ..+....+....... ..........+.......+. ++.+.++.+.....++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 154 (257)
T PF00487_consen 83 PPHQPWRPLFSYRRFLFRFLLSLFFPIWYFIFFFRK-------RRMRRRRKRPRRYLILAALL-LALLLALLAALFFFSP 154 (257)
T ss_pred hhhhhhhhhhhhhhccccccccccccchhhhhhccc-------cccccccccchhHHHHHHHh-hhhhhhhhhhhccccc
Confidence 1111000000000000000 000000000000000 00000000001111222222 2222222222333455
Q ss_pred ccceehhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCccccccccee-eeecc-cchhhhhhcccccchhhhhcCCC
Q 016642 234 ITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGLT-TVDRD-YGIFNNIHHDIGTHVIHHLFPQI 311 (385)
Q Consensus 234 ~~~l~~~lvP~l~~~~~l~~~~~l~H~~~~d~~~p~~~~~~w~~~~~~~~-Tv~~~-~~~l~~l~~~i~yH~~HHlfP~i 311 (385)
+..++++++|.++...++..+++++|.+. ++ .+ ..+..++..+++. +.+.. ..+++++++|+|||+|||+||+|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~H~~~-~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~HHl~P~v 230 (257)
T PF00487_consen 155 WWALLLFLLPFLIGSFFLAFVTYLEHYGL-DP-DD--NEDTRDFYYRQLPGSSNVHNSWWLNWLTGGLNYHIEHHLFPGV 230 (257)
T ss_pred ccchhHHHHHHhHHHHHHHHhhHHhhhcc-cc-cc--cccccceecccccccccccCchhhhccccCCCChHHhCCCCCc
Confidence 66788899999999999999999999976 21 11 1122233333331 22222 25789999999999999999999
Q ss_pred CCCCHHHHHHHhchhhhhccc
Q 016642 312 PHYHLVEATKAAKPVLGKYYR 332 (385)
Q Consensus 312 P~y~Lp~a~~~lk~~~~~~y~ 332 (385)
|+++||++++.+++.++++..
T Consensus 231 p~~~l~~~~~~~~~~~~~~~~ 251 (257)
T PF00487_consen 231 PWYNLPEAHPILKEVCPEYGV 251 (257)
T ss_pred CHHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999988754
No 16
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=99.97 E-value=3.4e-30 Score=233.39 Aligned_cols=188 Identities=19% Similarity=0.296 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHhhhccccCcccc-CCchhhHHHHHHHH-hhccCchhhhhhhhhhhccCCCCCCCCCccCCCcHHh
Q 016642 80 PLYWVAQGTMFWAIFVLGHDCGHGSFS-ESPLLNSFVGHILH-SSILVPYNGWRISHRTHHQNHGNVEHDESWVPMPEKI 157 (385)
Q Consensus 80 ~l~~~~~G~~~~~l~~l~Hd~~H~s~~-~~~~~N~~vG~i~~-~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~~~~~~~ 157 (385)
++.++++|+.++++++++|||+|++++ +++++|+++|.+++ ++.+.|+..||..|.+||+++|+. +|||+.+.++.
T Consensus 33 ~~~~~~~g~l~~glfi~~HDa~Hg~~~~~~~~~N~~iG~~~~~l~~g~~~~~~~~~H~~HH~~~~~~-~DpD~~~~~~~- 110 (225)
T cd03513 33 AAVVLLQTFLHTGLFIIAHDAMHGSLAPGNPRLNRAIGRLCLFLYAGFSYDRLLRKHHLHHRHPGTA-KDPDFHKGNPS- 110 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHcCCCCCC-CCCCCCCCCCC-
Confidence 344567899999999999999999999 79999999999985 568999999999999999999986 99998754321
Q ss_pred hhcCCcccchhHhhhhhhHHHHHHHHHHhcCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccce
Q 016642 158 YSKLDSSTRILRFSLPLPMLAYPAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMF 237 (385)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~~~~l 237 (385)
+..++ ++ . +.+. + + ...+.. ...+.+.++ ......+...++
T Consensus 111 --------~~~~w------y~--~--f~~~-------y------~---~~~qli----~l~ivw~~~-l~~~~~~~~~~~ 151 (225)
T cd03513 111 --------GFLPW------YL--H--FMSN-------Y------F---GWRQLA----ILAAVWLLL-LGLGSAPLANLL 151 (225)
T ss_pred --------ChHHH------HH--H--HHHh-------H------h---HHHHHH----HHHHHHHHH-HHHHcccHHHHH
Confidence 11110 00 0 0000 0 0 011111 111111111 111112455678
Q ss_pred ehhhhhHHHHHHHHHHH-HHhhcCCCCCCCCCCCCCCcccccccceeeeecccchhhhhh-cccccchhhhhcCCCCCCC
Q 016642 238 KLYGVPYLIFVMWLDFV-TYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIH-HDIGTHVIHHLFPQIPHYH 315 (385)
Q Consensus 238 ~~~lvP~l~~~~~l~~~-~~l~H~~~~d~~~p~~~~~~w~~~~~~~~Tv~~~~~~l~~l~-~~i~yH~~HHlfP~iP~y~ 315 (385)
.+|++|.+++++++.++ |++.|... +.|..+ .+.+ +|++. .+|+++++ .++|||.|||+||+||||+
T Consensus 152 ~~~~~P~l~~~~~l~~f~T~lpH~~~---~~~~~~------~~~a-~~~~~-~~~~~~l~c~~fgyH~eHH~fP~~Pw~~ 220 (225)
T cd03513 152 LFWALPLILSSLQLFYFGTWLPHRPG---RGGFAD------RHRA-RSSRL-SPVLSFLTCYHFGYHHEHHLSPSTPWWR 220 (225)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCC---CCCCCC------cccc-eecCc-cHHHHHHHHHhcCcchhhccCCCCCccc
Confidence 89999999999999988 89999843 334211 1111 23222 26888864 8899999999999999999
Q ss_pred HHHH
Q 016642 316 LVEA 319 (385)
Q Consensus 316 Lp~a 319 (385)
||++
T Consensus 221 Lp~~ 224 (225)
T cd03513 221 LPEL 224 (225)
T ss_pred Cccc
Confidence 9986
No 17
>KOG2987 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=99.95 E-value=1.9e-27 Score=210.17 Aligned_cols=278 Identities=21% Similarity=0.294 Sum_probs=180.6
Q ss_pred CCcccccCCCCCCCCCCCCC-HHHHHHhcc--ccccccCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHH
Q 016642 13 ANGVVEKGDSFDPAAPPPFK-IGEIRAAIP--KHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLY--WVAQG 87 (385)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~-~~~ir~~ip--~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~l~--~~~~G 87 (385)
.++|+|+|++|...+.|.-+ .+||.++-| +.+|+++++.-+.-++..++-+.+++.+ .-..| .|.+. -++.|
T Consensus 2 g~~~sr~dF~W~yTeePHasRR~eIL~kyPeIk~Lfg~dp~~kwvv~~~Vi~Q~~~~~ll--~dl~W-~~il~~AYf~gg 78 (324)
T KOG2987|consen 2 GQSVSRTDFEWVYTEEPHASRRKEILAKYPEIKSLFGPDPNLKWVVLGMVILQILAAYLL--RDLDW-KWILFIAYFFGG 78 (324)
T ss_pred CCCccccceeEEecCCcchhHHHHHHHhChHHHHHhCCCcchHHHHHHHHHHHHHHHHHH--hcccH-HHHHHHHHHhhh
Confidence 47899999999999999885 669999999 5899999987665554444444443322 22345 34433 25667
Q ss_pred HHHHHHHhhhccccCccccCC--chhhHHHHHHHHhhccCchh-hhhhhhhhhccCCCCCCCCCccCCCcHHhhhcCCcc
Q 016642 88 TMFWAIFVLGHDCGHGSFSES--PLLNSFVGHILHSSILVPYN-GWRISHRTHHQNHGNVEHDESWVPMPEKIYSKLDSS 164 (385)
Q Consensus 88 ~~~~~l~~l~Hd~~H~s~~~~--~~~N~~vG~i~~~~~~~p~~-~wr~~H~~HH~~tn~~~~Dpd~~~~~~~~~~~~~~~ 164 (385)
++-+.+....||-+|+.-|.+ +..|+++|.++.+|+|+|++ +.|..|..||++.+..+-|.|+.+..+...-. +..
T Consensus 79 ~iNhsl~LAIHeiSHN~aFg~~rpl~NR~~g~fANLPigvP~siSFkkYHleHHry~G~DgiDtDvPT~~Ea~~f~-t~~ 157 (324)
T KOG2987|consen 79 FINHSLTLAIHEISHNLAFGTNRPLYNRIFGFFANLPIGVPMSISFKKYHLEHHRYLGVDGIDTDVPTRFEAWLFD-TAF 157 (324)
T ss_pred hhchhHHHHHHHhhhhhhcccCchHHHHHHHHhhcCcccCceeeeehhhhhHHhHhcCCccccCCCCchhheehhh-hhh
Confidence 777889999999999998877 78999999999999999997 89999999999999888999986543321111 112
Q ss_pred cchhHhhhhhhHHHH--HHHHHHhcCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccceehhhh
Q 016642 165 TRILRFSLPLPMLAY--PAYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGV 242 (385)
Q Consensus 165 ~~~~~~~~~~~~~~~--p~~l~~~~~~~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~lv 242 (385)
++++. ...|.+|+. |+. ..|. +-.+.+++ ..+..+.+-. +.+..+|+..++
T Consensus 158 ~K~iw-~~lQpfFY~fRPl~------------i~pk-----p~t~me~i-N~iiQ~~fd~---li~~f~G~ksl~----- 210 (324)
T KOG2987|consen 158 GKLIW-VTLQPFFYAFRPLF------------IYPK-----PPTDMEFI-NTIIQLSFDL---LIVYFFGWKSLA----- 210 (324)
T ss_pred HHHHH-HHHHHHHHhhhhhe------------ecCC-----CchHHHHH-HHHHHHHHHH---HHHHHHhHHHHH-----
Confidence 22221 111212110 211 0111 11233332 2333333332 223345665432
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccccceeeeecccchhhhhhcccccchhhhhcCCCCCCCHHHHHHH
Q 016642 243 PYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHLFPQIPHYHLVEATKA 322 (385)
Q Consensus 243 P~l~~~~~l~~~~~l~H~~~~d~~~p~~~~~~w~~~~~~~~Tv~~~~~~l~~l~~~i~yH~~HHlfP~iP~y~Lp~a~~~ 322 (385)
+++.+..+.. |. +|...++-+++..+.+++- |.+. ||.+|+++.|.|||+|||-||.||.++||++
T Consensus 211 -Yll~~s~lg~-------gL-HP~aGHFisEHY~f~k~~E-TySY-YGplN~~tfNvGYH~EHHDFP~Ipg~~Lp~V--- 276 (324)
T KOG2987|consen 211 -YLLASSFLGM-------GL-HPIAGHFISEHYMFKKGQE-TYSY-YGPLNLLTFNVGYHVEHHDFPYIPGSRLPKV--- 276 (324)
T ss_pred -HHHHHHHHcC-------CC-CcccchhhHhhhhhcCCcc-ceee-ecceeeEEEecccccccccCCCCCccccHHH---
Confidence 2333333322 11 2334444455555566553 5433 4899999999999999999999999999999
Q ss_pred hchhhhhccccCCC
Q 016642 323 AKPVLGKYYREPNK 336 (385)
Q Consensus 323 lk~~~~~~y~~~~~ 336 (385)
|++.+|||.....
T Consensus 277 -r~iApEyYd~lp~ 289 (324)
T KOG2987|consen 277 -REIAPEYYDNLPQ 289 (324)
T ss_pred -HHhhHHHhcCchh
Confidence 8889999986543
No 18
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=99.94 E-value=5.7e-27 Score=222.51 Aligned_cols=297 Identities=16% Similarity=0.148 Sum_probs=165.5
Q ss_pred CHHHHHHhccc-cccccCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhccccCccccCCch
Q 016642 32 KIGEIRAAIPK-HCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLGHDCGHGSFSESPL 110 (385)
Q Consensus 32 ~~~~ir~~ip~-~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~G~~~~~l~~l~Hd~~H~s~~~~~~ 110 (385)
+.+++|+++++ .++..++.-.+...+.+++..+++++. -|.+.+++++++|+.+++.+.++||.||.+.+++++
T Consensus 100 ~f~klr~~~~~~gl~~~~~~ffl~~~l~~i~~~~~a~~~-----i~~~~l~~a~Ll~~a~~Qs~~l~Hd~gH~~i~~~~~ 174 (430)
T KOG4232|consen 100 SFRKLREKLEDMGLMDLNKTFFLHLLLLIILYLVLAWLL-----IYLLSLISAVLLGLAWAQSGWLQHDYGHLSIFKNSK 174 (430)
T ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence 45678888874 466666555444444333333332221 122256677889999999999999999999999999
Q ss_pred hhHHHHHHHHh-hccCchhhhhhhhhhhccCCCCCCCCCccCCCcH---HhhhcC--Ccccc-h--hHhhhhh-hHHHHH
Q 016642 111 LNSFVGHILHS-SILVPYNGWRISHRTHHQNHGNVEHDESWVPMPE---KIYSKL--DSSTR-I--LRFSLPL-PMLAYP 180 (385)
Q Consensus 111 ~N~~vG~i~~~-~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~~~~~~---~~~~~~--~~~~~-~--~~~~~~~-~~~~~p 180 (385)
+|+++..+.+. +.|.|..+|+..|+.||.++|..++|||+...+. ...... +..++ . ...+..+ .+.+.|
T Consensus 175 wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P~fl~g~~~~~~~~k~krk~~~~~~qh~yf~~~~~p 254 (430)
T KOG4232|consen 175 WNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEPAFLLGDPNSHEYGKKKRKYTPYPEQHLYFFLIGPP 254 (430)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccchhhhCCCchhhhcccceeEeecccceEEEEeccch
Confidence 99999988776 4799999999999999999999999999752221 000000 00001 0 0011100 001112
Q ss_pred HHHHHhcCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhccccceehhhhhHHHHHHHHHHHH-Hhhc
Q 016642 181 AYLWYRSPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYLSFVFGPITMFKLYGVPYLIFVMWLDFVT-YLHH 259 (385)
Q Consensus 181 ~~l~~~~~~~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~lvP~l~~~~~l~~~~-~l~H 259 (385)
.+..+.. ++...........+.+..+......-+++....+... +....+..|.+- +....|...++ ..+|
T Consensus 255 ~l~~~~~-~~~~~~~~~~~~~w~Dl~~~~~~~~~~~i~~~~~~~~------~~~~~L~~w~~r-~~~~~~s~~v~l~~nH 326 (430)
T KOG4232|consen 255 FLRLMWF-QQSIIFVQTNLLLWYDLYWPDRFYLRAFIYLHWGWGL------LLLSCLPNWPIR-FLFSSWSFWVTLTMNH 326 (430)
T ss_pred HHHHHHH-HHHHHHHHhHHHHHHHhhhhhhHHHhhHHHhcchhhh------HHHHhccCchHH-HHHHHHHHHHHHhhhc
Confidence 1111000 0000000000000111111111111111111111000 000111112221 22344555555 7788
Q ss_pred CCCCCCCCCCCCCCcccccccce-eeeeccc-chhhhhhcccccchhhhhcCCCCCCCHHHHHHHhchhhhhc---cccC
Q 016642 260 HGDDEHKLPWYRGKEWNYLRGGL-TTVDRDY-GIFNNIHHDIGTHVIHHLFPQIPHYHLVEATKAAKPVLGKY---YREP 334 (385)
Q Consensus 260 ~~~~d~~~p~~~~~~w~~~~~~~-~Tv~~~~-~~l~~l~~~i~yH~~HHlfP~iP~y~Lp~a~~~lk~~~~~~---y~~~ 334 (385)
... ++.+..+..-||...|+ +|+|+.. .|++||.+++|+|+||||||+||+.||+++.+.+|+.|.++ |+++
T Consensus 327 ~~~---~i~~~~~i~~dw~~~Q~~tT~n~~~~~f~dwl~ghln~qieHHLFPtmpr~nL~~v~P~Vke~c~k~~l~y~~~ 403 (430)
T KOG4232|consen 327 IDP---EIYHEGDIRRDWFSLQLATTINVGPSKFSDWLSGHLNFQIEHHLFPTMPRHNLNKVAPLVKELCKKHGLPYREK 403 (430)
T ss_pred cch---hhccCCcchhhHHHHHHhhccccCchhHHHHHHhhhhhhHHhhcCCCCCccchHHHHHHHHHHHHHcCCccccc
Confidence 844 56554331123444444 4667655 58999999999999999999999999999999999999876 4443
Q ss_pred CCCCCChHHHHHHHHHHh
Q 016642 335 NKSGPIPVHLIKNLVKSI 352 (385)
Q Consensus 335 ~~~~~~~~~~~~~l~~~~ 352 (385)
+ ++.++....
T Consensus 404 ----~----~~~~~~~~~ 413 (430)
T KOG4232|consen 404 ----P----HFEALGDII 413 (430)
T ss_pred ----h----HHHHHHHHH
Confidence 2 566665554
No 19
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=99.81 E-value=4.7e-19 Score=169.21 Aligned_cols=237 Identities=21% Similarity=0.231 Sum_probs=137.1
Q ss_pred hHHHHHHHHHHHHHHHHHH-HhhhccccCccccCCchhhHHHHHHHHhhccCchhhhhhhhh-hhccCCCCCCCCCccCC
Q 016642 75 TWFFWPLYWVAQGTMFWAI-FVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHR-THHQNHGNVEHDESWVP 152 (385)
Q Consensus 75 ~w~~~~l~~~~~G~~~~~l-~~l~Hd~~H~s~~~~~~~N~~vG~i~~~~~~~p~~~wr~~H~-~HH~~tn~~~~Dpd~~~ 152 (385)
+|+..+.+.+..|+...++ ...+||++| |++++|+++|.++..+. ++..|+..|+ .||++++. ++|||...
T Consensus 68 ~~~~~~~~~~~~G~~~g~i~~~~aHel~H----r~~~lnr~lg~~~~~~~--~~~~~~~~H~~~HH~~v~t-p~DP~tar 140 (314)
T cd03512 68 SALEKVGLILSLGLLSGVIGINTAHELIH----RRSRLERWLGKLLLASL--LYGHFAIEHVRGHHRYVAT-PEDPATAR 140 (314)
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHhccC----CCChHHHHHHHHHHHHh--cccceeeeecccCCCCCCC-CCCccccc
Confidence 4544555556677776545 478888888 56999999999987655 4555999998 59999995 79999653
Q ss_pred CcHHhhhcCCcccchhHhhhhhhHHHHH-HHHHH--h--cCCCCcccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 016642 153 MPEKIYSKLDSSTRILRFSLPLPMLAYP-AYLWY--R--SPGKDGSHFNPYSSLFSPGERKAVVISTACWTFMFGLLVYL 227 (385)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~l~~--~--~~~~~~~~~~~~~~l~~~~~r~~v~~~~~~~~~~~~~l~~~ 227 (385)
..+..|+-+ .|-. .-.+. .+-.. + ..|+ | .++ -+.+++...++.++ ++++
T Consensus 141 ~ge~~y~f~------~r~~----~g~~~~aw~~e~~rl~~~g~------~---~~~--~~n~~l~~~~~~~a----~~~~ 195 (314)
T cd03512 141 RGESFYRFL------PRAL----VGSFRSAWKLEKKRLRRKGR------S---PWS--PRNEVLRYLALAVA----LLAL 195 (314)
T ss_pred cCccHHHHH------HHHH----HHHHHHHHHHHHHHHHhcCC------C---CCc--cchHHHHHHHHHHH----HHHH
Confidence 333223210 0000 00000 00000 1 0111 0 001 12223333333322 2223
Q ss_pred HHHhccccceehhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCcccccccceeeeecccchhhhhhcccccchhhhh
Q 016642 228 SFVFGPITMFKLYGVPYLIFVMWLDFVTYLHHHGDDEHKLPWYRGKEWNYLRGGLTTVDRDYGIFNNIHHDIGTHVIHHL 307 (385)
Q Consensus 228 ~~~~g~~~~l~~~lvP~l~~~~~l~~~~~l~H~~~~d~~~p~~~~~~w~~~~~~~~Tv~~~~~~l~~l~~~i~yH~~HHl 307 (385)
+...+.+..+.++++|.+++...+..++|+||.|+.....+ +...+..+-. -+-+.+....|++..|+++|.+||.
T Consensus 196 ~~~~~g~~~l~~~l~~~~~g~~~l~~~nY~EHyGL~r~~~~---~gr~e~~~~~-hSWNs~~~~~n~l~~nl~rHsdHH~ 271 (314)
T cd03512 196 AAALGGLAGLLFLLIQAFYAKSLLELVNYIEHYGLLRKKLA---NGRYEPVGPR-HSWNSNHIVSNLLLFNLQRHSDHHA 271 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCC---CCccccCCCc-cCcCcCcHHHHHHHHhcchhhhhcc
Confidence 33344455567889999988889999999999997211111 1111111111 1112222457889999999999999
Q ss_pred cCCCCCCCHHHHHHHhchhhhhccccCCCCCCChHHHHHHHHHHhcc
Q 016642 308 FPQIPHYHLVEATKAAKPVLGKYYREPNKSGPIPVHLIKNLVKSIGE 354 (385)
Q Consensus 308 fP~iP~y~Lp~a~~~lk~~~~~~y~~~~~~~~~~~~~~~~l~~~~~~ 354 (385)
+|++|++.|+...+. +.++.-|-.+ +..++++.+|+....
T Consensus 272 ~p~~~y~~L~~~~~~--p~lP~~y~~m-----~~~al~P~lw~~~m~ 311 (314)
T cd03512 272 HPTRPYQALRPFPEA--PQLPSGYPVM-----ALLALIPPLWRRVMD 311 (314)
T ss_pred CCCCchhhccCCccC--CCCCccHHHH-----HHHHHhhHHHHHhhc
Confidence 999999999988654 5666544322 123577788887654
No 20
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=99.74 E-value=5.1e-18 Score=140.12 Aligned_cols=59 Identities=36% Similarity=0.553 Sum_probs=55.8
Q ss_pred HHHhhhccccCccccCCchhhHHHHHHHHhhccCchhhhhhhhhhhccCCCCCCCCCcc
Q 016642 92 AIFVLGHDCGHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDESW 150 (385)
Q Consensus 92 ~l~~l~Hd~~H~s~~~~~~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd~ 150 (385)
++..++|||+|+++++++++|++++.+++.+.+.|+..|+..|+.||+++++.++|||.
T Consensus 14 ~~~~~~H~~~H~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~H~~HH~~~~~~~~D~~~ 72 (122)
T cd01060 14 GLTVLAHELGHRSFFRSRWLNRLLGALLGLALGGSYGWWRRSHRRHHRYTNTPGKDPDS 72 (122)
T ss_pred HHHHHHHHHhhhhhhccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCcCCCCCCCcc
Confidence 78899999999999999999999999999999999999999999999999987789884
No 21
>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process
Probab=99.24 E-value=7.4e-12 Score=101.49 Aligned_cols=56 Identities=55% Similarity=1.112 Sum_probs=49.8
Q ss_pred cCCcccccCCCCCCCCCCCCCHHHHHHhccccccccCcchHHHHHHHHHHHHHHHH
Q 016642 12 NANGVVEKGDSFDPAAPPPFKIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALL 67 (385)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~ir~~ip~~~f~~~~~~~~~~l~~~~~~~~~~~ 67 (385)
+.+....++.+++|.++||||++|||++||+|||++|+++|+.|+++|++++++++
T Consensus 80 ~~~~~~~~~~~fdp~apPPFtL~dIraAIPkHCf~k~~~rS~sYv~rDv~iv~gLA 135 (136)
T PF11960_consen 80 VSSNKEEEEEEFDPGAPPPFTLADIRAAIPKHCFVKSPWRSMSYVVRDVAIVFGLA 135 (136)
T ss_pred ccccccccccccCCCCCCCcCHHHHHhhcChhhcCCChHHHHHHHHHHHHHHHHhc
Confidence 34455667788999999999999999999999999999999999999999987753
No 22
>COG1398 OLE1 Fatty-acid desaturase [Lipid metabolism]
Probab=98.40 E-value=3.1e-06 Score=77.20 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=41.1
Q ss_pred hccc-cCccccCCchhhHHHHHHHHhhccCchhhhhhhhhhhccCCCCCCCCCc
Q 016642 97 GHDC-GHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDES 149 (385)
Q Consensus 97 ~Hd~-~H~s~~~~~~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd 149 (385)
-|-| +|+++.-.+++..++.....+....|.-.|-..|.+||++| ++++||-
T Consensus 66 ~HRl~sHRa~~~~k~Le~~la~~g~l~~~G~~~~W~~~HR~HHr~t-DTd~DPh 118 (289)
T COG1398 66 LHRLWSHRAFKAHKWLEYVLAFWGALTTQGPAIEWVGIHRKHHRKT-DTDQDPH 118 (289)
T ss_pred hhhhhhhhhcccchHHHHHHHHHHHhhcCCCceeHHHHHHHhhccc-CCCCCCC
Confidence 4554 68889888888887776655557777779999999999999 4678883
No 23
>PLN02220 delta-9 acyl-lipid desaturase
Probab=98.18 E-value=6.8e-05 Score=71.02 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=36.0
Q ss_pred cCccccCCchhhHHHHHHHHhhccCchhhhhhhhhhhccCCCCCCCCCc
Q 016642 101 GHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDES 149 (385)
Q Consensus 101 ~H~s~~~~~~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd 149 (385)
+|.++.-++++..++..+..+...-+.-.|-..|..||+++. .++||=
T Consensus 81 sHrsfka~~~l~~~la~~g~~a~Qgs~~~Wv~~HR~HH~~sD-t~~DPH 128 (299)
T PLN02220 81 AHRSFKLPKWLEYPFAYSALFALQGDPIDWVSTHRFHHQFTD-SDRDPH 128 (299)
T ss_pred HhhcCcCcHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CCCCcc
Confidence 688888888887776655554444555599999999999987 466763
No 24
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=97.23 E-value=0.0053 Score=57.66 Aligned_cols=47 Identities=21% Similarity=0.279 Sum_probs=37.0
Q ss_pred cCccccCCchhhHHHHHHHHhh-ccCchhhhhhhhhhhccCCCCCCCCCc
Q 016642 101 GHGSFSESPLLNSFVGHILHSS-ILVPYNGWRISHRTHHQNHGNVEHDES 149 (385)
Q Consensus 101 ~H~s~~~~~~~N~~vG~i~~~~-~~~p~~~wr~~H~~HH~~tn~~~~Dpd 149 (385)
+|.++.-++++.-++....... .+.++ .|-..|..||++|. .++||-
T Consensus 92 sHRSyKa~kpLr~fla~~~~~A~Qg~~~-~WvrdHR~HHk~td-TD~DPh 139 (321)
T KOG1600|consen 92 SHRSYKAPKPLRYFLAYCNTLAFQGDII-DWVRDHRVHHKFTD-TDADPH 139 (321)
T ss_pred ccccccCCccHHHHHHHHHHHhccCChh-HHHhhhhhhccccc-cCCCCC
Confidence 6888888888888777665544 56666 89999999999998 578885
No 25
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=96.98 E-value=0.011 Score=51.79 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=38.2
Q ss_pred cCccccCCchhhHHHHHHHHhhccCchhhhhhhhhhhccCCCCCCCCCc
Q 016642 101 GHGSFSESPLLNSFVGHILHSSILVPYNGWRISHRTHHQNHGNVEHDES 149 (385)
Q Consensus 101 ~H~s~~~~~~~N~~vG~i~~~~~~~p~~~wr~~H~~HH~~tn~~~~Dpd 149 (385)
.|+++..++++..++..+..+....|...|...|..||+++. .+.||=
T Consensus 28 aHrsfk~~~~l~~~l~~~g~~a~qgs~~~W~~~HR~HH~~sD-t~~DPh 75 (178)
T cd03505 28 AHRSFKAPKPLRIFLAILGSLAGQGSPLWWVADHRLHHRYSD-TDGDPH 75 (178)
T ss_pred hhccCcCcHHHHHHHHHHHHHHcCcCHHHHHHHHHHhhcccC-CCCCCC
Confidence 688999888888877766665666677799999999999987 456763
No 26
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=72.98 E-value=2.1 Score=27.52 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=28.7
Q ss_pred ccccCCCCCCCCCCCC-CHHHHHHhcc--ccccccCcc
Q 016642 16 VVEKGDSFDPAAPPPF-KIGEIRAAIP--KHCWVKNPW 50 (385)
Q Consensus 16 ~~~~~~~~~~~~~~~~-~~~~ir~~ip--~~~f~~~~~ 50 (385)
|+++|+.|...+.|.- +.++|.++-| +.+|.+++.
T Consensus 1 v~~~DF~W~~~~ePH~~RRk~IL~k~PeIk~L~G~dp~ 38 (39)
T PF08557_consen 1 VSRNDFEWVYTDEPHASRRKEILKKHPEIKKLMGPDPL 38 (39)
T ss_pred CCccccEEeCCCCccHHHHHHHHHhChHHHHHhCCCCC
Confidence 6889999999988876 4679999998 478887764
No 27
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=65.09 E-value=23 Score=32.20 Aligned_cols=64 Identities=17% Similarity=0.286 Sum_probs=34.8
Q ss_pred CHHHHHHhccccccccCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhh
Q 016642 32 KIGEIRAAIPKHCWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAIFVLG 97 (385)
Q Consensus 32 ~~~~ir~~ip~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~G~~~~~l~~l~ 97 (385)
++++|+++.- ---+.+++-.++.++..++.+++...+.+.+++|+.|.+..++.|+.. ++++++
T Consensus 9 ~~~Qi~q~y~-~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~-am~vl~ 72 (224)
T PF13829_consen 9 RRKQIWQAYK-MTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLA-AMIVLS 72 (224)
T ss_pred HHHHHHHHHH-HHHHHCcchHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH-HHHHHH
Confidence 4566666652 112335555555555544455555555556667777776666666543 444443
No 28
>PLN02601 beta-carotene hydroxylase
Probab=42.02 E-value=75 Score=29.69 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=40.5
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-Hhhhccc-cCccccCCchhhHHHHHHHHh
Q 016642 44 CWVKNPWRSLSYVLRDLLVVLALLAAATHFNTWFFWPLYWVAQGTMFWAI-FVLGHDC-GHGSFSESPLLNSFVGHILHS 121 (385)
Q Consensus 44 ~f~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w~~~~l~~~~~G~~~~~l-~~l~Hd~-~H~s~~~~~~~N~~vG~i~~~ 121 (385)
-|++|+.-.+...+..+++++. ......++.+.+.++-+|+...|+ +.+.||. .|+.+--.+..|.
T Consensus 177 ~FE~NDlFaVifAvpAIaL~~~----G~~~~g~~p~~~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~-------- 244 (303)
T PLN02601 177 AFELNDVFAIVNAVPAIGLLYY----GFFNKGLVPGLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANV-------- 244 (303)
T ss_pred CcccccchhhhhHHHHHHHHHH----hhccccccHHHHHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCC--------
Confidence 4777776665544433333211 111122211222344566666665 4889995 6776532222221
Q ss_pred hccCch-hhhhhhhhhhcc
Q 016642 122 SILVPY-NGWRISHRTHHQ 139 (385)
Q Consensus 122 ~~~~p~-~~wr~~H~~HH~ 139 (385)
+| ..-+..|..||+
T Consensus 245 ----~Y~rrl~~AHklHHa 259 (303)
T PLN02601 245 ----PYLRKVAAAHQLHHT 259 (303)
T ss_pred ----HHHHHHHHHHHhhcc
Confidence 22 134568999997
No 29
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=41.92 E-value=34 Score=25.67 Aligned_cols=56 Identities=11% Similarity=0.149 Sum_probs=36.1
Q ss_pred HHHHHHHhchhh--hhccccCCCCCCChHHHHHHHHHHhcccEEEecCCcEEEEecCcccchhhhhhh
Q 016642 316 LVEATKAAKPVL--GKYYREPNKSGPIPVHLIKNLVKSIGEDHFVSDTGEIVYYETDPQLKKFLATKF 381 (385)
Q Consensus 316 Lp~a~~~lk~~~--~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (385)
...+++.+++.+ |+||-. -+.||+.+++...|.++++.++..++...........+
T Consensus 11 ~~~~~~~l~~~l~fP~yfG~----------NlDAl~DcL~d~~~~~~~~~~l~~~~~~~~~~~~~~~~ 68 (81)
T cd05141 11 KAALLDALAAALDFPSWFGH----------NWDALADCLTDLSWWPAEGYVLVLRDGDALRAADPEDF 68 (81)
T ss_pred HHHHHHHHHHHcCCCccccC----------CHHHHHHHHcCcccCCCCCeEEEEeCcHHhhhcCHHHH
Confidence 455666666555 444432 28999999998776666677888887775544333333
No 30
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=40.31 E-value=43 Score=31.49 Aligned_cols=13 Identities=46% Similarity=0.848 Sum_probs=10.5
Q ss_pred cchhhhhcCCCCC
Q 016642 301 THVIHHLFPQIPH 313 (385)
Q Consensus 301 yH~~HHlfP~iP~ 313 (385)
.|..||.+++.|.
T Consensus 98 ~H~~HH~~~~~~~ 110 (285)
T cd03511 98 SHARHHRYTQIPG 110 (285)
T ss_pred HHHHHhcCcCCCC
Confidence 4889999998763
No 31
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=29.64 E-value=4e+02 Score=25.17 Aligned_cols=15 Identities=20% Similarity=-0.026 Sum_probs=10.8
Q ss_pred hhhhhhhhccCCCCC
Q 016642 130 WRISHRTHHQNHGNV 144 (385)
Q Consensus 130 wr~~H~~HH~~tn~~ 144 (385)
--..|..||.++..+
T Consensus 228 ninyH~~HH~~P~vP 242 (288)
T cd03509 228 NNNLHVVHHDLPTLP 242 (288)
T ss_pred cCCchHhhcCCCCCC
Confidence 335789999887753
No 32
>PF04298 Zn_peptidase_2: Putative neutral zinc metallopeptidase; InterPro: IPR007395 Members of this family of bacterial proteins are described as hypothetical proteins or zinc-dependent proteases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=28.17 E-value=17 Score=32.99 Aligned_cols=18 Identities=33% Similarity=0.571 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhccccCc
Q 016642 86 QGTMFWAIFVLGHDCGHG 103 (385)
Q Consensus 86 ~G~~~~~l~~l~Hd~~H~ 103 (385)
.|...+++.+-+|||||-
T Consensus 83 ~~~SiaAvaVAAHEvGHA 100 (222)
T PF04298_consen 83 NGRSIAAVAVAAHEVGHA 100 (222)
T ss_pred CCCCHHHHHHHHHHHhHH
Confidence 455667777889999994
No 33
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.48 E-value=3.4e+02 Score=21.40 Aligned_cols=10 Identities=20% Similarity=0.674 Sum_probs=4.7
Q ss_pred ccCcchHHHH
Q 016642 46 VKNPWRSLSY 55 (385)
Q Consensus 46 ~~~~~~~~~~ 55 (385)
+++.++.+..
T Consensus 35 ~~~~~~~l~~ 44 (100)
T TIGR02230 35 TRSIWEGLGM 44 (100)
T ss_pred CCcHHHHHHH
Confidence 3345555443
No 34
>PF01337 Barstar: Barstar (barnase inhibitor); InterPro: IPR000468 Barstar is a small single chain protein. Barnase is the extracellular ribonuclease IPR001887 from INTERPRO of Bacillus amyloliquefaciens, and barstar its specific intracellular inhibitor [, ]. Expression of barstar is necessary to counter the lethal effect of expressed active barnase. The structure of the barnase-barstar complex is known [].; PDB: 2CX6_A 1B2U_F 1A19_A 1X1U_F 1B27_E 1X1W_F 1BGS_E 1X1Y_D 1B3S_D 1B2S_D ....
Probab=23.97 E-value=71 Score=24.16 Aligned_cols=57 Identities=16% Similarity=0.253 Sum_probs=35.5
Q ss_pred CCHHHHHHHhchhh--hhccccCCCCCCChHHHHHHHHHHhcccEEEecCCcEEEEecCcccchhhhhh
Q 016642 314 YHLVEATKAAKPVL--GKYYREPNKSGPIPVHLIKNLVKSIGEDHFVSDTGEIVYYETDPQLKKFLATK 380 (385)
Q Consensus 314 y~Lp~a~~~lk~~~--~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (385)
....++++.+++.+ |+||-. -+.||+.+++.-.+..+.+-++.+++..++.+.+...
T Consensus 9 ~~~~~~~~~l~~~l~fP~yfG~----------NlDAl~D~L~d~~~~~~~~~~i~~~~~~~~~~~~~~~ 67 (90)
T PF01337_consen 9 RDKEDFYDALAEALDFPDYFGR----------NLDALWDCLTDLSWIPEEPIVIIWENADKLKKRLPED 67 (90)
T ss_dssp SSHHHHHHHHHHHTT--TTSSS----------SHHHHHHHHHCT---S-SSEEEEEETHHHHHHTTTCH
T ss_pred CCHHHHHHHHHHHcCCCchhcC----------CHHHHHHHhcCcccCCCCCEEEEEcCcHHHHHHhHHH
Confidence 34566777777766 455532 2899999999877777777788888766665544433
No 35
>PLN02505 omega-6 fatty acid desaturase
Probab=21.79 E-value=2.4e+02 Score=27.95 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhhhccccCccccCCchhhHHHHHHHH
Q 016642 85 AQGTMFWAIFVLGHDCGHGSFSESPLLNSFVGHILH 120 (385)
Q Consensus 85 ~~G~~~~~l~~l~Hd~~H~s~~~~~~~N~~vG~i~~ 120 (385)
+.+..+..+..++|---.-...+.+-+|-.-|.+.+
T Consensus 261 v~~~wlv~itylqHt~~~ip~~~~~~W~~~rgAl~t 296 (381)
T PLN02505 261 IVNAFLVLITYLQHTHPALPHYDSSEWDWLRGALAT 296 (381)
T ss_pred HHHHHHHHHHHHhccCCCCCccCCCCcChhhcccee
Confidence 344445556788998777777788888887776653
No 36
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=20.96 E-value=38 Score=25.23 Aligned_cols=24 Identities=13% Similarity=0.353 Sum_probs=18.3
Q ss_pred ccEEEecCCcEEEEecCcccchhh
Q 016642 354 EDHFVSDTGEIVYYETDPQLKKFL 377 (385)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~ 377 (385)
...|+|++|+|+.+-+.+++.+.+
T Consensus 39 kn~wiDe~G~vYi~~s~eel~~~L 62 (76)
T PF06970_consen 39 KNGWIDENGNVYIIFSIEELMELL 62 (76)
T ss_pred hcCcCCCCCCEEEEeeHHHHHHHH
Confidence 467999999999887766665544
Done!