Query 016642
Match_columns 385
No_of_seqs 247 out of 1798
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 17:01:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dae_A KIAA0733 protein; mitog 27.9 35 0.0012 24.0 2.2 36 298-333 8-58 (75)
2 3cqb_A Probable protease HTPX 9.5 50 0.0017 25.0 -0.7 13 93-105 84-96 (107)
3 2kkc_A Sequestosome-1; P62, PB 7.5 1.2E+02 0.0042 22.8 0.8 25 355-379 65-89 (102)
4 2q14_A Phosphohydrolase; BT420 7.2 1.5E+02 0.0051 28.3 1.5 17 91-107 89-105 (410)
5 3irh_A HD domain protein; phos 6.1 1.9E+02 0.0064 28.3 1.5 17 92-108 128-144 (480)
6 3bg2_A DGTP triphosphohydrolas 5.6 2.1E+02 0.0071 27.6 1.5 25 91-115 109-135 (444)
7 3u1n_A SAM domain and HD domai 5.5 2.4E+02 0.008 27.9 1.8 17 92-108 102-118 (528)
8 2pgs_A Putative deoxyguanosine 5.2 2.3E+02 0.0077 27.4 1.5 27 91-117 102-130 (451)
9 2ktr_A Sequestosome-1; autopha 4.8 2.2E+02 0.0075 22.0 0.8 25 355-379 80-104 (117)
10 3b4r_A Putative zinc metallopr 4.7 4.1E+02 0.014 22.7 2.6 14 93-106 49-62 (224)
No 1
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.87 E-value=35 Score=24.00 Aligned_cols=36 Identities=31% Similarity=0.592 Sum_probs=26.7
Q ss_pred ccccchhhhh---cCCCC-----------CCCHHHHHHHhchhhhhc-ccc
Q 016642 298 DIGTHVIHHL---FPQIP-----------HYHLVEATKAAKPVLGKY-YRE 333 (385)
Q Consensus 298 ~i~yH~~HHl---fP~iP-----------~y~Lp~a~~~lk~~~~~~-y~~ 333 (385)
.+++|+-|.| ||.|| .+|+.++-+.|++..++| |.|
T Consensus 8 q~d~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~qES~kYLY~e 58 (75)
T 2dae_A 8 QIDFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQESTRYLYGE 58 (75)
T ss_dssp CCCHHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHHHHHHHTTTC
T ss_pred chHHHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHHhcccceecc
Confidence 3566777775 88888 578888888887777777 554
No 2
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain, PSI-2, protein structure INI structural genomics; HET: MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Probab=9.49 E-value=50 Score=24.96 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=10.2
Q ss_pred HHhhhccccCccc
Q 016642 93 IFVLGHDCGHGSF 105 (385)
Q Consensus 93 l~~l~Hd~~H~s~ 105 (385)
..+++||.||..-
T Consensus 84 ~aVlaHElgH~~~ 96 (107)
T 3cqb_A 84 EAVLAHEVSHIAN 96 (107)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHC
Confidence 4588999999653
No 3
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=7.52 E-value=1.2e+02 Score=22.80 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=21.2
Q ss_pred cEEEecCCcEEEEecCcccchhhhh
Q 016642 355 DHFVSDTGEIVYYETDPQLKKFLAT 379 (385)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (385)
..|-+++||.+++.++.++..-++.
T Consensus 65 l~Y~DedGDlItiSsDeEL~~Al~~ 89 (102)
T 2kkc_A 65 AHYRAERGDLVAFSSDEELTMAMSY 89 (102)
T ss_dssp EEEECTTCCEEEECSHHHHHHHHHH
T ss_pred EEEECCCCCEEEecCHHHHHHHHHh
Confidence 7888999999999999988776654
No 4
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=7.24 E-value=1.5e+02 Score=28.30 Aligned_cols=17 Identities=47% Similarity=0.698 Sum_probs=13.1
Q ss_pred HHHHhhhccccCccccC
Q 016642 91 WAIFVLGHDCGHGSFSE 107 (385)
Q Consensus 91 ~~l~~l~Hd~~H~s~~~ 107 (385)
..+..+.||.||+.|+.
T Consensus 89 ~~~AaLlHDiGh~PfsH 105 (410)
T 2q14_A 89 VQAAILLHDIGHGPFSH 105 (410)
T ss_dssp HHHHHHHTTTTCCTTHH
T ss_pred HHHHHHHhccCCCcccc
Confidence 34566799999998864
No 5
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A*
Probab=6.12 E-value=1.9e+02 Score=28.29 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=13.1
Q ss_pred HHHhhhccccCccccCC
Q 016642 92 AIFVLGHDCGHGSFSES 108 (385)
Q Consensus 92 ~l~~l~Hd~~H~s~~~~ 108 (385)
.+..+.||.||+.|+..
T Consensus 128 ~~AaLlHDIGH~PFsH~ 144 (480)
T 3irh_A 128 LCAALLHDVGHGPYSHT 144 (480)
T ss_dssp HHHHHHTTTTCCTTHHH
T ss_pred HHHHHHhccCCCCccch
Confidence 45577999999998543
No 6
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis}
Probab=5.62 E-value=2.1e+02 Score=27.64 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=17.4
Q ss_pred HHHHhhhccccCccccCC--chhhHHH
Q 016642 91 WAIFVLGHDCGHGSFSES--PLLNSFV 115 (385)
Q Consensus 91 ~~l~~l~Hd~~H~s~~~~--~~~N~~v 115 (385)
..+..++||-||..|+.. ..+|+++
T Consensus 109 v~~a~L~HDiGH~PFgH~gE~~l~~~~ 135 (444)
T 3bg2_A 109 VAAAALAHDIGNPPFGHSGEKAIGEFF 135 (444)
T ss_dssp HHHHHHHTTTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCccccHHHHHHHHH
Confidence 345578999999999866 3444443
No 7
>3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens}
Probab=5.54 E-value=2.4e+02 Score=27.93 Aligned_cols=17 Identities=53% Similarity=0.730 Sum_probs=13.4
Q ss_pred HHHhhhccccCccccCC
Q 016642 92 AIFVLGHDCGHGSFSES 108 (385)
Q Consensus 92 ~l~~l~Hd~~H~s~~~~ 108 (385)
.+..+.||.||+.|+..
T Consensus 102 ~~AaLlHDiGH~PFsH~ 118 (528)
T 3u1n_A 102 QIAGLCHDLGHGPFSHM 118 (528)
T ss_dssp HHHHHHTTTTCBTTBHH
T ss_pred HHHHHHhccCCCCccch
Confidence 44567999999998754
No 8
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV}
Probab=5.24 E-value=2.3e+02 Score=27.43 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=18.7
Q ss_pred HHHHhhhccccCccccCC--chhhHHHHH
Q 016642 91 WAIFVLGHDCGHGSFSES--PLLNSFVGH 117 (385)
Q Consensus 91 ~~l~~l~Hd~~H~s~~~~--~~~N~~vG~ 117 (385)
..+..++||-||..|+.. ..+|+++..
T Consensus 102 v~~a~L~HDiGH~PFgH~gE~~l~~~~~~ 130 (451)
T 2pgs_A 102 VQSACLAHDIGNPPFGHSGEDAIRNWFNQ 130 (451)
T ss_dssp HHHHHHHTTTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCCccccHHHHHHHHHHh
Confidence 345567999999999866 355555443
No 9
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=4.80 E-value=2.2e+02 Score=22.03 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=21.2
Q ss_pred cEEEecCCcEEEEecCcccchhhhh
Q 016642 355 DHFVSDTGEIVYYETDPQLKKFLAT 379 (385)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (385)
..|-+++||.+++.++.++..-++.
T Consensus 80 l~YkDEdGDlItISsDeEL~~Al~~ 104 (117)
T 2ktr_A 80 AHYRAERGDLVAFSSDEELTMAMSY 104 (117)
T ss_dssp EEEECTTCCEEEECSHHHHHHHHHH
T ss_pred EEEECCCCCEEEecCHHHHHHHHHh
Confidence 7788889999999999988776654
No 10
>3b4r_A Putative zinc metalloprotease MJ0392; intramembrane protease, CBS domain, hydrolase, metal-binding, transmembrane; 3.30A {Methanocaldococcus jannaschii}
Probab=4.65 E-value=4.1e+02 Score=22.75 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=10.4
Q ss_pred HHhhhccccCcccc
Q 016642 93 IFVLGHDCGHGSFS 106 (385)
Q Consensus 93 l~~l~Hd~~H~s~~ 106 (385)
..++.||.||.-..
T Consensus 49 ~~v~~HElgH~~~A 62 (224)
T 3b4r_A 49 VSVVLHELGHSYVA 62 (224)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34679999997653
Done!