Query 016642
Match_columns 385
No_of_seqs 247 out of 1798
Neff 8.3
Searched_HMMs 13730
Date Mon Mar 25 17:01:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016642.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016642hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2heka1 a.211.1.1 (A:1-369) Hy 15.2 32 0.0023 29.5 2.2 17 92-108 78-94 (369)
2 d2o6ia1 a.211.1.1 (A:1-453) Hy 11.6 37 0.0027 30.6 1.5 17 92-108 104-120 (453)
3 d1tdha3 g.39.1.8 (A:247-290) E 6.9 1.3E+02 0.0098 17.1 2.1 16 356-371 24-39 (44)
4 d1kcfa1 a.140.2.1 (A:3-38) Mit 6.9 1E+02 0.0075 16.3 1.4 29 95-123 6-34 (36)
5 d1ay7b_ c.9.1.1 (B:) Barstar ( 6.3 1.1E+02 0.0083 20.5 1.9 50 315-377 12-63 (89)
6 d1twfl_ g.41.9.2 (L:) RBP12 su 5.3 1.2E+02 0.0084 17.9 1.1 14 97-110 24-37 (46)
7 d1gjja1 a.140.1.1 (A:1-50) Thy 5.1 51 0.0037 19.6 -0.6 14 5-18 14-27 (50)
8 d1o6wa2 b.72.1.1 (A:30-75) Spl 4.8 3.4E+02 0.025 15.6 3.8 34 348-381 10-43 (46)
9 d1ni3a2 d.15.10.2 (A:307-388) 4.1 1E+02 0.0073 20.6 0.3 14 355-368 69-82 (82)
10 d3cmna1 d.92.1.16 (A:43-391) U 3.6 81 0.0059 27.1 -0.8 25 91-115 161-186 (346)
No 1
>d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]}
Probab=15.16 E-value=32 Score=29.50 Aligned_cols=17 Identities=41% Similarity=0.552 Sum_probs=14.1
Q ss_pred HHHhhhccccCccccCC
Q 016642 92 AIFVLGHDCGHGSFSES 108 (385)
Q Consensus 92 ~l~~l~Hd~~H~s~~~~ 108 (385)
.+..|+||.||+.|+..
T Consensus 78 ~~A~LlHDiGh~PFsH~ 94 (369)
T d2heka1 78 KLAGLLHDLGHPPFSHT 94 (369)
T ss_dssp HHHHHTTTTTCCSSSSC
T ss_pred HHHHHHhhcccchhhhh
Confidence 45567999999999876
No 2
>d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]}
Probab=11.61 E-value=37 Score=30.60 Aligned_cols=17 Identities=41% Similarity=0.679 Sum_probs=13.3
Q ss_pred HHHhhhccccCccccCC
Q 016642 92 AIFVLGHDCGHGSFSES 108 (385)
Q Consensus 92 ~l~~l~Hd~~H~s~~~~ 108 (385)
.+..|.||-||+.||..
T Consensus 104 ~~AaLlHDiGHgPfSH~ 120 (453)
T d2o6ia1 104 LCAALLHDVGHGPYSHT 120 (453)
T ss_dssp HHHHHHTTTTCCTTHHH
T ss_pred HHHHHHhccCccccccc
Confidence 44557999999999753
No 3
>d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.94 E-value=1.3e+02 Score=17.14 Aligned_cols=16 Identities=19% Similarity=0.663 Sum_probs=12.3
Q ss_pred EEEecCCcEEEEecCc
Q 016642 356 HFVSDTGEIVYYETDP 371 (385)
Q Consensus 356 ~~~~~~~~~~~~~~~~ 371 (385)
..++.+|+.+||+.+.
T Consensus 24 sL~D~~GRTIWF~Gdp 39 (44)
T d1tdha3 24 SLQDRHGRTIWFQGDP 39 (44)
T ss_dssp EEECTTSCEEEESSCC
T ss_pred hhhccCCCEEEecCCC
Confidence 4556789999999765
No 4
>d1kcfa1 a.140.2.1 (A:3-38) Mitochondrial resolvase ydc2 N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=6.86 E-value=1e+02 Score=16.29 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=23.4
Q ss_pred hhhccccCccccCCchhhHHHHHHHHhhc
Q 016642 95 VLGHDCGHGSFSESPLLNSFVGHILHSSI 123 (385)
Q Consensus 95 ~l~Hd~~H~s~~~~~~~N~~vG~i~~~~~ 123 (385)
.++|-|--..++++.+-+.++-.+..+|+
T Consensus 6 flqhickltglsrsgrkdellrrivdspi 34 (36)
T d1kcfa1 6 FLQHICKLTGLSRSGRKDELLRRIVDSPI 34 (36)
T ss_dssp HHHHHHHHTTCCCCSCTTHHHHHHHHCCC
T ss_pred HHHHHHHhhcccccccHHHHHHHHhcCCC
Confidence 46777877788999998999888887764
No 5
>d1ay7b_ c.9.1.1 (B:) Barstar (barnase inhibitor) {Bacillus amyloliquefaciens [TaxId: 1390]}
Probab=6.29 E-value=1.1e+02 Score=20.45 Aligned_cols=50 Identities=16% Similarity=0.145 Sum_probs=29.7
Q ss_pred CHHHHHHHhchhh--hhccccCCCCCCChHHHHHHHHHHhcccEEEecCCcEEEEecCcccchhh
Q 016642 315 HLVEATKAAKPVL--GKYYREPNKSGPIPVHLIKNLVKSIGEDHFVSDTGEIVYYETDPQLKKFL 377 (385)
Q Consensus 315 ~Lp~a~~~lk~~~--~~~y~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (385)
..++.|..+++.+ |.||-.. +.|+|++++.... ...++.+.+.......+
T Consensus 12 ~~~~~~~~~~~~l~~p~~~G~N----------~DAl~D~ltd~~~---~P~~i~~~~~~~~~~~~ 63 (89)
T d1ay7b_ 12 SISDLHQTLKKELALPEYYGEN----------LDALWDCLTGWVE---YPLVLEWRQFEQSKQLT 63 (89)
T ss_dssp SHHHHHHHHHHHTTCCTTCCSS----------HHHHHHHHHHTSC---SSEEEEEETHHHHHHHT
T ss_pred CHHHHHHHHHHHcCCCcccCCC----------HHHHHHHHcCCCC---CCeEEEEeccHHHhhhC
Confidence 4567777777766 4555332 8899999874322 23455666555444433
No 6
>d1twfl_ g.41.9.2 (L:) RBP12 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.28 E-value=1.2e+02 Score=17.87 Aligned_cols=14 Identities=29% Similarity=0.586 Sum_probs=10.7
Q ss_pred hccccCccccCCch
Q 016642 97 GHDCGHGSFSESPL 110 (385)
Q Consensus 97 ~Hd~~H~s~~~~~~ 110 (385)
-.||||..+.|.|.
T Consensus 24 CreCG~RIlYK~RT 37 (46)
T d1twfl_ 24 CKDCGHRILLKART 37 (46)
T ss_dssp CSSSCCCCCBCCCC
T ss_pred eccCCcEEEEeecc
Confidence 46899999887754
No 7
>d1gjja1 a.140.1.1 (A:1-50) Thymopoietin, LAP2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.12 E-value=51 Score=19.56 Aligned_cols=14 Identities=50% Similarity=0.510 Sum_probs=11.8
Q ss_pred ccccccccCCcccc
Q 016642 5 RKLKNEVNANGVVE 18 (385)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (385)
.|||.|.-||+|.-
T Consensus 14 dkLKseL~annV~L 27 (50)
T d1gjja1 14 DKLKSELVANNVTL 27 (50)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCC
Confidence 57999999999864
No 8
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.78 E-value=3.4e+02 Score=15.61 Aligned_cols=34 Identities=18% Similarity=0.381 Sum_probs=21.6
Q ss_pred HHHHhcccEEEecCCcEEEEecCcccchhhhhhh
Q 016642 348 LVKSIGEDHFVSDTGEIVYYETDPQLKKFLATKF 381 (385)
Q Consensus 348 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (385)
+.+.-....+..++|++++|-...+-+.-..-++
T Consensus 10 ~l~~~~W~e~~~~~Gr~YYyN~~T~es~We~P~~ 43 (46)
T d1o6wa2 10 LLRENGWKAAKTADGKVYYYNPTTRETSWTIPAF 43 (46)
T ss_dssp HHHHHTCEEEECTTCCEEEEETTTTEEESSCCCC
T ss_pred HhccCCCeEEECCCCCEEEEECCCCCEecCCCcc
Confidence 4444455666778899999987665554443333
No 9
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=4.14 E-value=1e+02 Score=20.59 Aligned_cols=14 Identities=21% Similarity=0.684 Sum_probs=10.9
Q ss_pred cEEEecCCcEEEEe
Q 016642 355 DHFVSDTGEIVYYE 368 (385)
Q Consensus 355 ~~~~~~~~~~~~~~ 368 (385)
.-|+-+||||+.||
T Consensus 69 KdYiv~DGDVi~Fr 82 (82)
T d1ni3a2 69 KEYVMESGDIAHWK 82 (82)
T ss_dssp TTCBCCTTCEEECC
T ss_pred CcceEeCCcEEEeC
Confidence 56777888998876
No 10
>d3cmna1 d.92.1.16 (A:43-391) Uncharacterized protein Caur0242 {Chloroflexus aurantiacus [TaxId: 1108]}
Probab=3.61 E-value=81 Score=27.14 Aligned_cols=25 Identities=12% Similarity=0.325 Sum_probs=20.2
Q ss_pred HHHHhhhccccCcccc-CCchhhHHH
Q 016642 91 WAIFVLGHDCGHGSFS-ESPLLNSFV 115 (385)
Q Consensus 91 ~~l~~l~Hd~~H~s~~-~~~~~N~~v 115 (385)
.++|+..||+.|..+| ..+|+-+-+
T Consensus 161 ~rl~lal~E~ah~~lF~~~pWLr~~~ 186 (346)
T d3cmna1 161 FRLWITLHEMTHAFEFEAYPWVRTYF 186 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 5889999999999887 468876544
Done!