BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016644
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 571 bits (1471), Expect = e-163, Method: Compositional matrix adjust.
Identities = 270/376 (71%), Positives = 319/376 (84%), Gaps = 9/376 (2%)
Query: 14 KLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQL---MEPPSETIPFALA 70
KLE +LSMKGG G+ SYANNS AQA+HA+SMLHLL ETL+N+ L PP PF
Sbjct: 2 KLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPP----PFTAV 57
Query: 71 DLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSS 130
DLGCS G NT++I+D I+KHISKR++A+G +PPEF+AFFSDLPSNDFNTLFQLLPP+ S+
Sbjct: 58 DLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSN 117
Query: 131 --MEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMA 188
MEECLA+D +RSYF AGVPGSFYRRLFP R+IDFFHSAFSLHWLSQVPES D+RS A
Sbjct: 118 TCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAA 177
Query: 189 YNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQG 248
YN+G+V+IHGA E T AYK+QFQ DLA FL AR+ E+KR G+MFLVCLGRTS DPTDQG
Sbjct: 178 YNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQG 237
Query: 249 GPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEV 308
G G+LFGTHFQDAW+DLV+EGL+ EKRD FNIPVYA SLQ+FKEVV+ANGSF I+KL V
Sbjct: 238 GAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVV 297
Query: 309 FKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKE 368
+KGGSPLVV +PDDA+EVG+A A+SCRSVAGVLV+AHIG++LS +LF RVE R + +AK+
Sbjct: 298 YKGGSPLVVNEPDDASEVGRAFASSCRSVAGVLVEAHIGEELSNKLFSRVESRATSHAKD 357
Query: 369 LIEQLQFFHIVASLSF 384
++ LQFFHIVASLSF
Sbjct: 358 VLVNLQFFHIVASLSF 373
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 188/380 (49%), Gaps = 40/380 (10%)
Query: 15 LEMILSMKGGNGEASYANNS--QAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADL 72
+ +L MKGG GE SYA NS Q Q I S+ + E L + T A+ADL
Sbjct: 3 VRQVLHMKGGAGENSYAMNSFIQRQVI---SITKPITEAAIT-ALYSGDTVTTRLAIADL 58
Query: 73 GCSCGNNTLYIVDVIIKHISKRYEASGYE-PPEFSAFFSDLPSNDFNTLFQLLPPIGSSM 131
GCS G N L+ V +IK + + + G E PE+ F +DLP NDFN +F+ LP
Sbjct: 59 GCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP------ 112
Query: 132 EECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNK 191
+ +D F GVPGSFY RLFP ++ F HS++SL WLSQVP + NK
Sbjct: 113 ---IENDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVP------IGIESNK 163
Query: 192 GKVYI-HGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGP 250
G +Y+ + + NAY KQFQ D A FL R++E+ G M L LGR S D
Sbjct: 164 GNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRAST--E 221
Query: 251 GILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFK 310
L A N +V EGLI EK D FNIP Y S E + + GSF+I+ +E +
Sbjct: 222 CCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASE 281
Query: 311 GGSPLVVKQPDDAAEV---GQALANSCRSVAGVLVDAHIGDQLSEELFKR-----VERRG 362
K D V G +A R+VA L+ H G+ + E++F R +ER
Sbjct: 282 IYWSSCTKDGDGGGSVEEEGYNVARCMRAVAEPLLLDHFGEAIIEDVFHRYKLLIIERMS 341
Query: 363 SCYAKELIEQLQFFHIVASL 382
E+ +F +++ SL
Sbjct: 342 K-------EKTKFINVIVSL 354
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 126/368 (34%), Positives = 182/368 (49%), Gaps = 41/368 (11%)
Query: 14 KLEMILSMKGGNGEASYANNS--------QAQAIHAQSMLHLLRETLDNIQLMEPPSETI 65
+L+ +L M GG G+ SYA NS + + + Q + LLR L NI
Sbjct: 2 ELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKC------- 54
Query: 66 PFALADLGCSCGNNTLYIVDVIIKHISK--RYEASGYEPPEFSAFFSDLPSNDFNTLFQL 123
+ADLGC+ G NTL V I++ I K + + + E P F +DL NDFN++F+L
Sbjct: 55 -IKVADLGCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKL 113
Query: 124 LPPIGSSMEECLASDTHR---SYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPES 180
LP +E+ + R S +PGSFY RLFP S+ F HS + L WLSQVP
Sbjct: 114 LPSFYRKLEK----ENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSG 169
Query: 181 ALDKRSMAYNKGKVYIHGANE-HTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGR 239
+ + + NKG +Y A+ AY QF D FL S+E+ G M L C+ +
Sbjct: 170 LVTELGIGTNKGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLLTCICK 229
Query: 240 TSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANG 299
+ + +L + A NDLV EG + EK DSFN+PVY S +E K +VE G
Sbjct: 230 -GVELDARNAIDLL-----EMAINDLVVEGHLEEEKLDSFNLPVYIPSAEEVKCIVEEEG 283
Query: 300 SFVINKLEVFK----GGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELF 355
SF I LE FK G + DD + +A+S R+V ++ +H G+ + ++F
Sbjct: 284 SFEILYLETFKVLYDAGFSI-----DDEHIKAEYVASSVRAVYEPILASHFGEAIIPDIF 338
Query: 356 KRVERRGS 363
R + +
Sbjct: 339 HRFAKHAA 346
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 177 bits (448), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 125/376 (33%), Positives = 181/376 (48%), Gaps = 45/376 (11%)
Query: 14 KLEMILSMKGGNGEASYANNS-------QAQAIHAQSMLHLLRETLDNIQLMEPPSETIP 66
+L+ +L M GG G+ SYA NS + + + Q + LLR L NI
Sbjct: 2 ELQEVLHMNGGEGDTSYAKNSSYNLFLIRVKPVLEQCIQELLRANLPNINKC-------- 53
Query: 67 FALADLGCSCGNNTLYIVDVIIKHISK--RYEASGYEPPEFSAFFSDLPSNDFNTLFQLL 124
F + DLGC+ G NT V I++ I K + + + E P F +DL NDFN++F+LL
Sbjct: 54 FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLL 113
Query: 125 PPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDK 184
P ++E+ S +PGSFY RLFP S+ F HS + LHWLSQVP + +
Sbjct: 114 PSFYRNLEKENGRKIG-SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTE 172
Query: 185 RSMAYNKGKVYIHGANE-HTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSAD 243
++ NKG +Y A+ AY QF D FL S+E+ G M L + + D
Sbjct: 173 LGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTFICK--ED 230
Query: 244 PTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI 303
D L + + NDLV EG + EK DSFN+P+YA S +E K +VE GSF I
Sbjct: 231 EFDHPNSMDL----LEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEI 286
Query: 304 NKLEVF----------------KGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIG 347
LE F + SP+ + AA V A+ RS+ ++ +H G
Sbjct: 287 LYLETFNAPYDAGFSIDDDYQGRSHSPVSCDEHARAAHV----ASVVRSIYEPILASHFG 342
Query: 348 DQLSEELFKRVERRGS 363
+ + +L R+ + +
Sbjct: 343 EAILPDLSHRIAKNAA 358
>pdb|3V3N|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3N|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Minocycline
pdb|3V3O|A Chain A, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|B Chain B, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|C Chain C, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
pdb|3V3O|D Chain D, Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In
Complex With Tigecycline
Length = 378
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 23/160 (14%)
Query: 229 CGSMFLVCLGRTS----------ADPTDQGGPGILFGTHFQ--DAWNDLVQEGLITGEKR 276
C F +C G A+P + G + FG F+ D W + Q
Sbjct: 192 CPGFFQLCNGNRLMASHQGNLLFANPNNNGA--LHFGISFKTPDEWKNQTQVDFQNRNSV 249
Query: 277 DSFNIPVYASSLQEFKEVVEANGSFVINKLEVF------KGGSPLVVKQPDDAAEVGQAL 330
F + ++ + +KE++ A SFV +F K PL + DAA +
Sbjct: 250 VDFLLKKFSDWDERYKELIHATLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPF 309
Query: 331 ANSCRSVAGVLVDAHI-GDQLSEELFKRVERRGSCYAKEL 369
A + V LVDA I D L++ F +E Y +++
Sbjct: 310 A--GQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQM 347
>pdb|4I77|H Chain H, Lebrikizumab Fab Bound To Il-13
Length = 219
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 164 FFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGA 199
F SA+S++W+ Q P AL+ +M + GK+ + A
Sbjct: 27 FSLSAYSVNWIRQPPGKALEWLAMIWGDGKIVYNSA 62
>pdb|3P9U|A Chain A, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|B Chain B, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|C Chain C, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
pdb|3P9U|D Chain D, Crystal Structure Of Tetx2 From Bacteroides
Thetaiotaomicron With Substrate Analogue
Length = 378
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 30/170 (17%)
Query: 229 CGSMFLVCLGRTS----------ADPTDQGGPGILFGTHFQ--DAWNDLVQEGLITGEKR 276
C F +C G A+P + G + FG F+ D W + Q
Sbjct: 192 CPGFFQLCNGNRLXASHQGNLLFANPNNNGA--LHFGISFKTPDEWKNQTQVDFQNRNSV 249
Query: 277 DSFNIPVYASSLQEFKEVVEANGSFVINKLEVF------KGGSPLVVKQPDDAAEVGQAL 330
F + ++ + +KE++ SFV +F K PL + DAA +
Sbjct: 250 VDFLLKKFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITXIGDAAHLXPPF 309
Query: 331 ANSCRSVAGVLVDAHI-GDQLS-------EELFKRVERRGSCYAKELIEQ 372
A + V LVDA I D L+ EE K E++ Y KE E+
Sbjct: 310 A--GQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQXFIYGKEAQEE 357
>pdb|2XYO|A Chain A, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|B Chain B, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|C Chain C, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
pdb|2XYO|D Chain D, Structural Basis For A New Tetracycline Resistance
Mechanism Relying On The Tetx Monooxygenase
Length = 399
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 30/170 (17%)
Query: 229 CGSMFLVCLGRTS----------ADPTDQGGPGILFGTHFQ--DAWNDLVQEGLITGEKR 276
C F +C G A+P + G + FG F+ D W + Q
Sbjct: 213 CPGFFQLCNGNRLXASHQGNLLFANPNNNGA--LHFGISFKTPDEWKNQTQVDFQNRNSV 270
Query: 277 DSFNIPVYASSLQEFKEVVEANGSFVINKLEVF------KGGSPLVVKQPDDAAEVGQAL 330
F + ++ + +KE++ SFV +F K PL + DAA +
Sbjct: 271 VDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITXIGDAAHLXPPF 330
Query: 331 ANSCRSVAGVLVDAHI-GDQLS-------EELFKRVERRGSCYAKELIEQ 372
A + V LVDA I D L+ EE K E++ Y KE E+
Sbjct: 331 A--GQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQXFIYGKEAQEE 378
>pdb|2Y6R|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
pdb|2Y6R|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Chlortetracycline
Length = 398
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 23/160 (14%)
Query: 229 CGSMFLVCLGRTS----------ADPTDQGGPGILFGTHFQ--DAWNDLVQEGLITGEKR 276
C F +C G A+P + G + FG F+ D W + Q
Sbjct: 212 CPGFFQLCNGNRLMASHQGNLLFANPNNNGA--LHFGISFKTPDEWKNQTQVDFQNRNSV 269
Query: 277 DSFNIPVYASSLQEFKEVVEANGSFVINKLEVF------KGGSPLVVKQPDDAAEVGQAL 330
F + ++ + +KE++ SFV +F K PL + DAA +
Sbjct: 270 VDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPF 329
Query: 331 ANSCRSVAGVLVDAHI-GDQLSEELFKRVERRGSCYAKEL 369
A + V LVDA I D L++ F +E Y +++
Sbjct: 330 A--GQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQM 367
>pdb|2XDO|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2XDO|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase
Tetx2 From Bacteroides Thetaiotaomicron
pdb|2Y6Q|A Chain A, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|B Chain B, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|C Chain C, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|2Y6Q|D Chain D, Structure Of The Tetx Monooxygenase In Complex With The
Substrate 7-Iodtetracycline
pdb|4A6N|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A6N|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
pdb|4A99|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|B Chain B, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|C Chain C, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
pdb|4A99|D Chain D, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Minocycline
Length = 398
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 23/160 (14%)
Query: 229 CGSMFLVCLGRTS----------ADPTDQGGPGILFGTHFQ--DAWNDLVQEGLITGEKR 276
C F +C G A+P + G + FG F+ D W + Q
Sbjct: 212 CPGFFQLCNGNRLMASHQGNLLFANPNNNGA--LHFGISFKTPDEWKNQTQVDFQNRNSV 269
Query: 277 DSFNIPVYASSLQEFKEVVEANGSFVINKLEVF------KGGSPLVVKQPDDAAEVGQAL 330
F + ++ + +KE++ SFV +F K PL + DAA +
Sbjct: 270 VDFLLKEFSDWDERYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPF 329
Query: 331 ANSCRSVAGVLVDAHI-GDQLSEELFKRVERRGSCYAKEL 369
A + V LVDA I D L++ F +E Y +++
Sbjct: 330 A--GQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQM 367
>pdb|4A6N|A Chain A, Structure Of The Tetracycline Degrading Monooxygenase Tetx
In Complex With Tigecycline
Length = 398
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 61/160 (38%), Gaps = 23/160 (14%)
Query: 229 CGSMFLVCLGRTS----------ADPTDQGGPGILFGTHFQ--DAWNDLVQEGLITGEKR 276
C F +C G A+P + G + FG F+ D W + Q
Sbjct: 212 CPGFFQLCNGNRLMASHQGNLLFANPNNNGA--LHFGISFKTPDEWKNQTQVDFQNRNSV 269
Query: 277 DSFNIPVYASSLQEFKEVVEANGSFVINKLEVF------KGGSPLVVKQPDDAAEVGQAL 330
F + ++ + +KE++ SFV +F K PL + DAA +
Sbjct: 270 VDFLLKEFSDWDKRYKELIHTTLSFVGLATRIFPLEKPWKSKRPLPITMIGDAAHLMPPF 329
Query: 331 ANSCRSVAGVLVDAHI-GDQLSEELFKRVERRGSCYAKEL 369
A + V LVDA I D L++ F +E Y +++
Sbjct: 330 A--GQGVNSGLVDALILSDNLADGKFNSIEEAVKNYEQQM 367
>pdb|3IX9|A Chain A, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
pdb|3IX9|B Chain B, Crystal Structure Of Streptococcus Pneumoniae
Dihydrofolate Reductase - Sp9 Mutant
Length = 190
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 82 YIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNT 119
Y+ +VI+ HI R E Y P EF + S+ F T
Sbjct: 132 YLDEVIVTHIHARVEGDTYFPAEFDLSLFETVSSKFYT 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,297,424
Number of Sequences: 62578
Number of extensions: 454819
Number of successful extensions: 1227
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1205
Number of HSP's gapped (non-prelim): 15
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)