Query 016644
Match_columns 385
No_of_seqs 152 out of 575
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 08:42:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 8E-105 2E-109 790.0 38.6 383 1-385 1-386 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 1.3E-89 2.8E-94 677.3 28.1 324 48-383 1-332 (334)
3 PRK14103 trans-aconitate 2-met 99.6 1.4E-13 3.1E-18 131.1 18.1 225 28-365 5-231 (255)
4 PRK01683 trans-aconitate 2-met 99.5 2.6E-13 5.6E-18 129.2 17.3 227 28-365 7-234 (258)
5 PRK10258 biotin biosynthesis p 99.5 1.9E-12 4E-17 122.9 16.0 179 10-303 4-182 (251)
6 TIGR02072 BioC biotin biosynth 99.4 8.4E-12 1.8E-16 116.1 13.8 216 28-363 7-223 (240)
7 COG4106 Tam Trans-aconitate me 99.2 2.4E-10 5.3E-15 104.9 13.4 203 65-366 30-234 (257)
8 COG2226 UbiE Methylase involve 99.2 3.2E-10 7E-15 107.0 12.5 201 12-305 10-221 (238)
9 PLN02233 ubiquinone biosynthes 99.1 9.6E-10 2.1E-14 105.5 13.5 209 7-307 27-247 (261)
10 PTZ00098 phosphoethanolamine N 99.1 8.8E-09 1.9E-13 99.0 19.5 194 65-365 52-248 (263)
11 TIGR02752 MenG_heptapren 2-hep 99.0 2.7E-09 6E-14 99.7 12.8 211 13-310 5-220 (231)
12 PLN02336 phosphoethanolamine N 99.0 1.1E-08 2.3E-13 106.1 17.9 193 65-365 266-460 (475)
13 TIGR00740 methyltransferase, p 99.0 3.6E-09 7.7E-14 99.8 11.6 164 65-302 53-221 (239)
14 PLN02244 tocopherol O-methyltr 99.0 3.3E-08 7.2E-13 98.4 17.7 162 65-309 118-279 (340)
15 PF01209 Ubie_methyltran: ubiE 98.9 1.2E-09 2.6E-14 103.2 4.0 165 65-308 47-220 (233)
16 PF13489 Methyltransf_23: Meth 98.9 3E-09 6.4E-14 92.8 6.1 137 64-304 21-159 (161)
17 PRK08317 hypothetical protein; 98.8 3.6E-07 7.8E-12 84.6 19.5 206 65-364 19-224 (241)
18 PRK11036 putative S-adenosyl-L 98.8 4.9E-08 1.1E-12 93.1 12.5 163 65-309 44-208 (255)
19 PRK15451 tRNA cmo(5)U34 methyl 98.8 7.2E-08 1.6E-12 91.7 12.6 165 65-302 56-224 (247)
20 PLN02396 hexaprenyldihydroxybe 98.8 5.5E-08 1.2E-12 96.1 11.2 157 66-310 132-291 (322)
21 PRK15068 tRNA mo(5)U34 methylt 98.7 4.4E-08 9.5E-13 96.9 9.1 153 66-309 123-275 (322)
22 KOG2940 Predicted methyltransf 98.7 5.5E-08 1.2E-12 90.3 8.6 152 66-308 73-227 (325)
23 PLN02490 MPBQ/MSBQ methyltrans 98.7 2E-07 4.3E-12 92.7 13.3 146 65-310 113-258 (340)
24 PF08241 Methyltransf_11: Meth 98.7 2.1E-08 4.5E-13 79.3 4.4 95 70-234 1-95 (95)
25 TIGR00452 methyltransferase, p 98.7 1.1E-07 2.3E-12 93.8 10.0 153 65-308 121-273 (314)
26 PRK00216 ubiE ubiquinone/menaq 98.6 8E-07 1.7E-11 82.7 14.8 169 66-310 52-227 (239)
27 PRK11705 cyclopropane fatty ac 98.6 4.4E-06 9.6E-11 84.6 20.0 187 66-365 168-357 (383)
28 smart00828 PKS_MT Methyltransf 98.6 2E-07 4.3E-12 86.7 9.4 144 68-309 2-145 (224)
29 TIGR01934 MenG_MenH_UbiE ubiqu 98.6 1E-06 2.2E-11 81.1 13.8 166 65-310 39-212 (223)
30 PRK11088 rrmA 23S rRNA methylt 98.6 1.1E-06 2.4E-11 84.7 14.1 76 65-170 85-160 (272)
31 PRK06202 hypothetical protein; 98.5 1.3E-06 2.9E-11 81.9 13.0 165 65-310 60-224 (232)
32 PRK11207 tellurite resistance 98.5 6E-07 1.3E-11 82.5 10.4 103 66-235 31-133 (197)
33 PF08242 Methyltransf_12: Meth 98.5 3.8E-08 8.3E-13 79.7 1.5 99 70-232 1-99 (99)
34 TIGR02081 metW methionine bios 98.5 1.5E-06 3.3E-11 79.3 12.2 28 282-310 142-169 (194)
35 PRK00121 trmB tRNA (guanine-N( 98.4 6.7E-07 1.5E-11 82.5 7.6 158 36-271 14-175 (202)
36 PRK11873 arsM arsenite S-adeno 98.4 3.3E-06 7.2E-11 81.1 12.0 153 65-308 77-230 (272)
37 KOG3010 Methyltransferase [Gen 98.3 1.3E-05 2.9E-10 75.2 13.8 199 68-365 36-243 (261)
38 PRK06922 hypothetical protein; 98.3 1.1E-06 2.4E-11 93.3 7.3 115 66-235 419-536 (677)
39 KOG1540 Ubiquinone biosynthesi 98.3 4.1E-06 8.8E-11 79.2 10.0 172 64-305 99-278 (296)
40 TIGR00477 tehB tellurite resis 98.3 1.5E-06 3.4E-11 79.7 6.8 103 66-236 31-133 (195)
41 TIGR02716 C20_methyl_CrtF C-20 98.3 3.3E-05 7.1E-10 75.6 15.8 154 65-304 149-302 (306)
42 TIGR01983 UbiG ubiquinone bios 98.3 1.4E-05 2.9E-10 74.2 12.4 158 65-309 45-204 (224)
43 PF12847 Methyltransf_18: Meth 98.2 4.3E-06 9.3E-11 68.7 7.6 107 67-236 3-111 (112)
44 PF02353 CMAS: Mycolic acid cy 98.2 3.1E-05 6.7E-10 75.0 14.5 155 66-309 63-218 (273)
45 PRK05134 bifunctional 3-demeth 98.2 8.9E-06 1.9E-10 76.1 9.9 156 65-308 48-205 (233)
46 TIGR02021 BchM-ChlM magnesium 98.2 3.8E-05 8.2E-10 71.4 13.5 29 281-310 180-208 (219)
47 TIGR00138 gidB 16S rRNA methyl 98.2 4.7E-06 1E-10 75.8 7.3 131 66-282 43-173 (181)
48 PRK05785 hypothetical protein; 98.2 1E-05 2.2E-10 76.1 9.5 78 66-181 52-130 (226)
49 TIGR03438 probable methyltrans 98.1 9.1E-06 2E-10 79.6 9.3 114 65-240 63-181 (301)
50 PF13847 Methyltransf_31: Meth 98.1 4.7E-06 1E-10 72.9 6.5 105 65-238 3-112 (152)
51 TIGR03587 Pse_Me-ase pseudamin 98.1 1.1E-05 2.4E-10 74.7 9.3 106 26-175 14-119 (204)
52 PRK12335 tellurite resistance 98.1 5.4E-06 1.2E-10 80.6 7.3 103 66-236 121-223 (287)
53 PRK11188 rrmJ 23S rRNA methylt 98.1 3.1E-05 6.8E-10 71.9 12.1 109 66-239 52-168 (209)
54 PF03848 TehB: Tellurite resis 98.1 9.9E-06 2.2E-10 74.3 8.5 106 65-238 30-135 (192)
55 PLN02336 phosphoethanolamine N 98.1 2.2E-05 4.8E-10 81.4 10.7 101 66-235 38-141 (475)
56 KOG1541 Predicted protein carb 98.0 2E-05 4.3E-10 73.1 8.7 138 28-239 21-163 (270)
57 TIGR00091 tRNA (guanine-N(7)-) 98.0 2.1E-05 4.5E-10 72.1 8.6 115 66-238 17-134 (194)
58 PRK07580 Mg-protoporphyrin IX 98.0 0.00025 5.3E-09 65.9 15.7 29 281-310 188-216 (230)
59 smart00138 MeTrc Methyltransfe 98.0 7.6E-05 1.7E-09 71.9 12.4 123 65-234 99-240 (264)
60 PRK09489 rsmC 16S ribosomal RN 98.0 1.1E-05 2.3E-10 80.6 6.8 106 67-236 198-303 (342)
61 COG2230 Cfa Cyclopropane fatty 98.0 0.00018 3.9E-09 69.7 14.7 152 65-309 72-224 (283)
62 TIGR00537 hemK_rel_arch HemK-r 98.0 4.4E-05 9.5E-10 68.8 9.3 124 66-239 20-143 (179)
63 PF05175 MTS: Methyltransferas 97.9 2.6E-05 5.7E-10 69.9 7.5 109 66-236 32-140 (170)
64 PRK15001 SAM-dependent 23S rib 97.9 3.2E-05 7E-10 78.1 7.5 111 67-236 230-340 (378)
65 PF13649 Methyltransf_25: Meth 97.8 1.3E-05 2.9E-10 65.2 3.5 99 69-230 1-101 (101)
66 PF08003 Methyltransf_9: Prote 97.8 8.5E-05 1.8E-09 72.3 9.3 147 65-302 115-261 (315)
67 TIGR02469 CbiT precorrin-6Y C5 97.8 4.7E-05 1E-09 63.2 6.4 38 66-118 20-57 (124)
68 PHA03411 putative methyltransf 97.8 0.00017 3.6E-09 69.7 10.2 120 66-239 65-186 (279)
69 KOG2361 Predicted methyltransf 97.7 0.00017 3.6E-09 67.9 9.4 200 29-309 30-238 (264)
70 PRK14121 tRNA (guanine-N(7)-)- 97.7 7.2E-05 1.6E-09 75.6 7.0 110 67-236 124-235 (390)
71 PRK14967 putative methyltransf 97.7 0.00036 7.7E-09 65.2 11.2 167 66-299 37-204 (223)
72 PRK13944 protein-L-isoaspartat 97.7 0.00015 3.2E-09 67.0 7.8 83 66-174 73-155 (205)
73 TIGR03534 RF_mod_PrmC protein- 97.7 0.00012 2.6E-09 68.9 7.2 128 65-236 87-217 (251)
74 PF06080 DUF938: Protein of un 97.6 0.00038 8.3E-09 64.4 10.2 159 68-305 28-189 (204)
75 PLN02232 ubiquinone biosynthes 97.6 0.00012 2.7E-09 65.0 6.8 103 154-307 36-146 (160)
76 PRK00107 gidB 16S rRNA methylt 97.6 0.00015 3.3E-09 66.3 7.4 100 66-236 46-145 (187)
77 PRK08287 cobalt-precorrin-6Y C 97.6 0.00052 1.1E-08 62.2 10.7 35 65-114 31-65 (187)
78 KOG1270 Methyltransferases [Co 97.6 0.00021 4.6E-09 68.0 7.5 76 214-307 173-248 (282)
79 TIGR03533 L3_gln_methyl protei 97.5 0.00034 7.4E-09 68.1 8.9 130 66-237 122-252 (284)
80 COG4123 Predicted O-methyltran 97.5 0.00022 4.7E-09 67.9 7.0 126 64-236 43-170 (248)
81 PRK04266 fibrillarin; Provisio 97.5 0.0011 2.3E-08 62.5 11.6 35 66-115 73-107 (226)
82 PTZ00146 fibrillarin; Provisio 97.5 0.0016 3.4E-08 63.6 12.8 61 30-114 107-167 (293)
83 TIGR00438 rrmJ cell division p 97.5 0.00044 9.5E-09 62.8 8.5 104 65-237 32-147 (188)
84 cd02440 AdoMet_MTases S-adenos 97.5 0.00048 1E-08 53.6 7.6 102 68-235 1-103 (107)
85 TIGR00080 pimt protein-L-isoas 97.5 0.00051 1.1E-08 63.8 9.0 81 65-172 77-157 (215)
86 PRK13942 protein-L-isoaspartat 97.5 0.0004 8.6E-09 64.6 8.1 82 65-173 76-157 (212)
87 PRK00312 pcm protein-L-isoaspa 97.5 0.00038 8.2E-09 64.4 7.9 80 65-174 78-157 (212)
88 PF05401 NodS: Nodulation prot 97.5 0.001 2.2E-08 61.1 10.3 106 64-237 42-147 (201)
89 PF00891 Methyltransf_2: O-met 97.5 0.0012 2.6E-08 62.2 11.3 102 65-240 100-203 (241)
90 TIGR03840 TMPT_Se_Te thiopurin 97.5 0.0033 7.1E-08 58.7 13.9 152 66-310 35-189 (213)
91 PLN02585 magnesium protoporphy 97.4 0.0015 3.2E-08 64.7 11.7 83 65-175 144-226 (315)
92 PRK13255 thiopurine S-methyltr 97.4 0.0044 9.6E-08 58.0 13.9 151 66-310 38-192 (218)
93 TIGR00536 hemK_fam HemK family 97.4 0.00072 1.6E-08 65.7 8.6 127 67-237 116-245 (284)
94 PRK11805 N5-glutamine S-adenos 97.4 0.00084 1.8E-08 66.1 9.0 74 67-168 135-208 (307)
95 PF03141 Methyltransf_29: Puta 97.3 0.00031 6.6E-09 72.4 5.6 50 153-240 172-223 (506)
96 PF07021 MetW: Methionine bios 97.3 0.0022 4.7E-08 58.8 10.3 148 66-310 14-169 (193)
97 PRK01544 bifunctional N5-gluta 97.2 0.0013 2.9E-08 69.1 9.2 130 66-236 139-269 (506)
98 PRK09328 N5-glutamine S-adenos 97.2 0.002 4.3E-08 61.6 9.3 127 65-236 108-238 (275)
99 PRK10901 16S rRNA methyltransf 97.1 0.0028 6E-08 65.2 9.7 124 66-237 245-373 (427)
100 PRK14966 unknown domain/N5-glu 96.9 0.0034 7.5E-08 64.1 8.9 73 67-168 253-326 (423)
101 TIGR00406 prmA ribosomal prote 96.9 0.0014 3.1E-08 63.8 5.9 103 66-239 160-262 (288)
102 PF13659 Methyltransf_26: Meth 96.9 0.0023 4.9E-08 52.8 6.3 111 67-237 2-116 (117)
103 KOG3178 Hydroxyindole-O-methyl 96.9 0.018 3.9E-07 57.2 12.8 195 18-308 134-330 (342)
104 TIGR00563 rsmB ribosomal RNA s 96.8 0.0067 1.4E-07 62.4 9.9 128 66-239 239-371 (426)
105 PF05148 Methyltransf_8: Hypot 96.8 0.0034 7.4E-08 58.2 6.9 40 157-235 118-157 (219)
106 PRK00517 prmA ribosomal protei 96.8 0.0029 6.4E-08 60.2 6.6 19 65-83 119-137 (250)
107 PRK00377 cbiT cobalt-precorrin 96.8 0.014 3E-07 53.4 10.8 36 65-114 40-75 (198)
108 KOG4300 Predicted methyltransf 96.7 0.0057 1.2E-07 56.6 7.1 159 66-315 77-239 (252)
109 COG2242 CobL Precorrin-6B meth 96.6 0.036 7.8E-07 50.6 12.1 37 218-270 117-153 (187)
110 TIGR03704 PrmC_rel_meth putati 96.6 0.019 4.2E-07 54.8 10.9 34 66-114 87-120 (251)
111 COG2264 PrmA Ribosomal protein 96.5 0.0031 6.8E-08 61.6 4.9 32 42-84 150-181 (300)
112 PRK00811 spermidine synthase; 96.5 0.0081 1.8E-07 58.4 7.4 115 65-236 76-191 (283)
113 PRK14903 16S rRNA methyltransf 96.4 0.013 2.9E-07 60.3 9.0 126 66-239 238-369 (431)
114 PF05891 Methyltransf_PK: AdoM 96.4 0.0049 1.1E-07 57.5 5.0 144 64-308 54-201 (218)
115 KOG3045 Predicted RNA methylas 96.4 0.01 2.2E-07 56.7 7.2 23 214-236 242-264 (325)
116 COG2227 UbiG 2-polyprenyl-3-me 96.4 0.0074 1.6E-07 57.0 6.1 104 66-239 60-164 (243)
117 PRK14968 putative methyltransf 96.4 0.012 2.6E-07 52.6 7.3 125 66-236 24-148 (188)
118 COG2813 RsmC 16S RNA G1207 met 96.4 0.018 3.9E-07 56.3 8.9 107 67-238 160-268 (300)
119 PF03291 Pox_MCEL: mRNA cappin 96.3 0.011 2.4E-07 58.9 7.4 50 156-239 138-189 (331)
120 PRK14904 16S rRNA methyltransf 96.3 0.02 4.3E-07 59.2 9.5 125 66-239 251-380 (445)
121 PRK14902 16S rRNA methyltransf 96.3 0.02 4.4E-07 59.1 9.3 124 66-236 251-379 (444)
122 PLN03075 nicotianamine synthas 96.1 0.02 4.3E-07 56.1 7.9 109 65-236 123-233 (296)
123 PRK04457 spermidine synthase; 96.1 0.033 7.1E-07 53.6 9.3 113 65-239 66-180 (262)
124 COG2890 HemK Methylase of poly 96.0 0.014 3.1E-07 56.7 6.3 126 68-237 113-239 (280)
125 PF02390 Methyltransf_4: Putat 96.0 0.017 3.8E-07 53.1 6.4 113 68-236 20-133 (195)
126 TIGR00417 speE spermidine synt 95.9 0.019 4.1E-07 55.4 6.6 113 65-235 72-185 (270)
127 PF01135 PCMT: Protein-L-isoas 95.8 0.045 9.8E-07 51.0 8.6 19 66-84 73-91 (209)
128 KOG2904 Predicted methyltransf 95.8 0.16 3.4E-06 49.1 12.0 26 215-240 264-289 (328)
129 PRK13943 protein-L-isoaspartat 95.7 0.031 6.7E-07 55.5 7.5 19 66-84 81-99 (322)
130 TIGR01177 conserved hypothetic 95.6 0.085 1.8E-06 52.3 10.2 25 215-239 273-297 (329)
131 PRK14901 16S rRNA methyltransf 95.3 0.12 2.5E-06 53.4 10.1 125 66-237 253-385 (434)
132 PRK01544 bifunctional N5-gluta 95.2 0.056 1.2E-06 56.9 7.6 141 34-236 322-462 (506)
133 smart00650 rADc Ribosomal RNA 95.2 0.024 5.2E-07 50.5 4.2 76 66-173 14-89 (169)
134 TIGR00446 nop2p NOL1/NOP2/sun 95.2 0.11 2.4E-06 49.9 9.1 126 66-238 72-201 (264)
135 KOG1975 mRNA cap methyltransfe 95.1 0.066 1.4E-06 52.8 7.2 114 67-239 119-240 (389)
136 PRK03612 spermidine synthase; 95.0 0.14 3.1E-06 54.0 10.1 150 65-284 297-449 (521)
137 PLN02366 spermidine synthase 95.0 0.077 1.7E-06 52.4 7.5 117 64-236 90-206 (308)
138 PRK07402 precorrin-6B methylas 94.9 0.054 1.2E-06 49.4 5.7 34 66-114 41-74 (196)
139 COG2518 Pcm Protein-L-isoaspar 94.8 0.078 1.7E-06 49.3 6.6 20 65-84 72-91 (209)
140 KOG1331 Predicted methyltransf 94.8 0.034 7.3E-07 53.8 4.2 130 29-240 17-147 (293)
141 PF05724 TPMT: Thiopurine S-me 94.7 0.72 1.6E-05 43.2 13.0 167 45-310 23-192 (218)
142 PF12147 Methyltransf_20: Puta 94.5 0.51 1.1E-05 46.1 11.5 53 42-112 117-169 (311)
143 PRK00274 ksgA 16S ribosomal RN 94.3 0.047 1E-06 52.7 4.1 142 16-175 6-167 (272)
144 PLN02672 methionine S-methyltr 94.2 0.097 2.1E-06 59.5 6.7 43 67-124 120-162 (1082)
145 PRK13256 thiopurine S-methyltr 93.5 0.65 1.4E-05 43.8 10.0 118 65-238 43-165 (226)
146 PHA03412 putative methyltransf 93.2 0.058 1.3E-06 51.2 2.4 72 66-168 50-121 (241)
147 COG4976 Predicted methyltransf 93.0 0.093 2E-06 49.5 3.4 63 215-309 204-266 (287)
148 PRK01581 speE spermidine synth 92.9 0.25 5.4E-06 49.9 6.6 36 64-114 149-184 (374)
149 PF10294 Methyltransf_16: Puta 92.9 0.15 3.2E-06 45.8 4.6 115 65-239 45-159 (173)
150 TIGR03439 methyl_EasF probable 92.7 1 2.2E-05 44.7 10.5 68 65-154 76-143 (319)
151 PLN02781 Probable caffeoyl-CoA 92.5 0.48 1E-05 44.8 7.6 36 65-114 68-103 (234)
152 PF01728 FtsJ: FtsJ-like methy 92.4 0.9 2E-05 40.6 9.0 37 65-115 23-59 (181)
153 PF04672 Methyltransf_19: S-ad 91.8 4.3 9.2E-05 39.3 13.2 56 222-303 176-231 (267)
154 PRK11783 rlmL 23S rRNA m(2)G24 91.7 0.71 1.5E-05 50.7 8.9 114 67-236 540-656 (702)
155 KOG2899 Predicted methyltransf 91.5 1.1 2.3E-05 42.8 8.5 24 213-236 186-209 (288)
156 PRK15128 23S rRNA m(5)C1962 me 90.8 1.8 4E-05 44.2 10.3 27 210-236 313-339 (396)
157 COG1352 CheR Methylase of chem 90.6 1.2 2.6E-05 43.2 8.2 103 65-176 96-217 (268)
158 PRK10611 chemotaxis methyltran 90.5 0.59 1.3E-05 45.7 6.2 44 65-115 115-158 (287)
159 KOG1499 Protein arginine N-met 90.5 0.73 1.6E-05 45.9 6.8 103 66-233 61-164 (346)
160 PF01739 CheR: CheR methyltran 90.0 0.48 1E-05 43.7 4.7 44 64-113 30-73 (196)
161 KOG3191 Predicted N6-DNA-methy 89.9 2.8 6.1E-05 38.4 9.4 144 43-240 27-172 (209)
162 COG0220 Predicted S-adenosylme 89.5 0.86 1.9E-05 43.0 6.2 114 67-236 50-164 (227)
163 PF01234 NNMT_PNMT_TEMT: NNMT/ 88.9 0.67 1.5E-05 44.5 5.0 82 160-307 157-238 (256)
164 PRK11727 23S rRNA mA1618 methy 88.6 0.46 1E-05 47.2 3.8 80 65-168 114-196 (321)
165 KOG1500 Protein arginine N-met 87.2 1.8 4E-05 43.1 6.9 153 66-285 178-342 (517)
166 PF06325 PrmA: Ribosomal prote 87.1 0.61 1.3E-05 45.8 3.6 33 41-84 148-180 (295)
167 TIGR00478 tly hemolysin TlyA f 86.9 0.61 1.3E-05 44.1 3.3 38 65-118 75-112 (228)
168 PF13679 Methyltransf_32: Meth 86.4 1.1 2.5E-05 38.6 4.6 55 42-112 7-61 (141)
169 PRK03522 rumB 23S rRNA methylu 86.2 1.1 2.4E-05 44.1 4.9 19 66-84 174-192 (315)
170 COG2519 GCD14 tRNA(1-methylade 85.9 8.6 0.00019 36.9 10.5 125 66-277 95-220 (256)
171 PTZ00338 dimethyladenosine tra 84.8 2.1 4.5E-05 42.0 6.1 20 66-85 37-56 (294)
172 PF05185 PRMT5: PRMT5 arginine 84.4 1.9 4.1E-05 44.9 5.8 22 66-87 187-208 (448)
173 COG2263 Predicted RNA methylas 84.0 0.59 1.3E-05 42.9 1.7 20 65-84 45-64 (198)
174 PRK14896 ksgA 16S ribosomal RN 84.0 2.9 6.3E-05 39.9 6.6 20 66-85 30-49 (258)
175 TIGR00755 ksgA dimethyladenosi 83.0 1.4 3E-05 41.9 3.9 21 65-85 29-49 (253)
176 PRK11933 yebU rRNA (cytosine-C 82.6 8.9 0.00019 40.1 9.9 125 65-237 113-243 (470)
177 PF09243 Rsm22: Mitochondrial 79.9 12 0.00026 36.2 9.2 132 65-236 33-167 (274)
178 PLN02823 spermine synthase 79.1 7.3 0.00016 39.0 7.6 20 65-84 103-122 (336)
179 COG0500 SmtA SAM-dependent met 78.8 6.6 0.00014 31.2 6.1 21 220-240 139-159 (257)
180 PF02384 N6_Mtase: N-6 DNA Met 77.7 3.4 7.3E-05 40.3 4.7 40 65-112 46-85 (311)
181 PRK04148 hypothetical protein; 77.3 4.8 0.0001 34.9 5.0 20 65-84 16-36 (134)
182 PRK13168 rumA 23S rRNA m(5)U19 75.0 3.5 7.6E-05 42.6 4.2 19 66-84 298-316 (443)
183 PF08704 GCD14: tRNA methyltra 74.8 10 0.00023 36.2 7.1 22 66-87 41-62 (247)
184 PRK05031 tRNA (uracil-5-)-meth 73.2 14 0.0003 37.2 7.9 18 67-84 208-225 (362)
185 PRK10909 rsmD 16S rRNA m(2)G96 72.4 4.6 0.0001 37.2 3.9 18 67-84 55-72 (199)
186 COG0030 KsgA Dimethyladenosine 72.2 7.8 0.00017 37.4 5.5 108 66-177 31-159 (259)
187 PF05219 DREV: DREV methyltran 71.8 11 0.00024 36.4 6.3 20 65-84 94-113 (265)
188 KOG1269 SAM-dependent methyltr 71.3 5.2 0.00011 40.5 4.3 55 148-240 165-219 (364)
189 PF06859 Bin3: Bicoid-interact 71.2 3.4 7.3E-05 34.6 2.4 25 212-236 20-44 (110)
190 PF11968 DUF3321: Putative met 70.6 19 0.00042 33.8 7.5 136 16-239 3-152 (219)
191 KOG3420 Predicted RNA methylas 70.1 3.1 6.8E-05 36.8 2.1 34 41-83 33-66 (185)
192 COG5459 Predicted rRNA methyla 69.0 53 0.0012 33.3 10.5 66 218-297 207-272 (484)
193 TIGR00479 rumA 23S rRNA (uraci 68.2 6.9 0.00015 40.2 4.5 19 66-84 293-311 (431)
194 TIGR02085 meth_trns_rumB 23S r 67.9 7.3 0.00016 39.4 4.6 18 67-84 235-252 (374)
195 PRK04338 N(2),N(2)-dimethylgua 66.7 7.2 0.00016 39.7 4.2 62 26-114 30-91 (382)
196 KOG1271 Methyltransferases [Ge 65.7 8.5 0.00018 35.4 4.0 18 67-84 69-86 (227)
197 COG1189 Predicted rRNA methyla 65.4 7.1 0.00015 37.2 3.6 37 64-116 78-114 (245)
198 PLN02589 caffeoyl-CoA O-methyl 64.7 14 0.0003 35.4 5.5 21 65-85 79-99 (247)
199 TIGR02143 trmA_only tRNA (urac 60.4 12 0.00026 37.5 4.5 17 68-84 200-216 (353)
200 TIGR00095 RNA methyltransferas 60.2 13 0.00027 33.9 4.2 42 66-123 50-91 (189)
201 PF07942 N2227: N2227-like pro 56.7 38 0.00082 32.9 7.0 64 213-308 179-242 (270)
202 PF07757 AdoMet_MTase: Predict 54.9 7.1 0.00015 32.7 1.5 20 65-84 58-77 (112)
203 PF01269 Fibrillarin: Fibrilla 54.7 24 0.00051 33.4 5.0 23 66-89 74-96 (229)
204 COG2521 Predicted archaeal met 54.7 14 0.00031 35.2 3.6 57 147-238 189-247 (287)
205 PF00398 RrnaAD: Ribosomal RNA 54.1 37 0.0008 32.4 6.5 22 65-86 30-51 (262)
206 PF08123 DOT1: Histone methyla 52.9 52 0.0011 30.5 7.1 19 65-83 42-60 (205)
207 PRK11524 putative methyltransf 52.7 22 0.00047 34.4 4.7 22 215-236 59-80 (284)
208 KOG3115 Methyltransferase-like 50.3 7.9 0.00017 36.2 1.1 18 66-83 61-78 (249)
209 PF07091 FmrO: Ribosomal RNA m 49.7 16 0.00035 35.0 3.2 39 60-113 100-138 (251)
210 COG4122 Predicted O-methyltran 49.2 36 0.00078 32.0 5.4 36 65-114 59-94 (219)
211 TIGR01444 fkbM_fam methyltrans 48.9 9.9 0.00022 32.1 1.5 17 68-84 1-17 (143)
212 PRK13699 putative methylase; P 45.6 32 0.00069 32.3 4.5 21 216-236 52-72 (227)
213 PRK00050 16S rRNA m(4)C1402 me 43.6 53 0.0012 32.3 5.8 35 205-239 205-239 (296)
214 PF09445 Methyltransf_15: RNA 42.4 16 0.00035 32.7 1.9 18 68-85 2-19 (163)
215 PRK00050 16S rRNA m(4)C1402 me 40.6 25 0.00054 34.6 3.0 45 48-112 8-52 (296)
216 TIGR02987 met_A_Alw26 type II 39.8 40 0.00087 35.6 4.6 42 65-113 31-72 (524)
217 PF14904 FAM86: Family of unkn 39.6 33 0.00071 28.2 3.0 32 331-362 67-100 (100)
218 COG4076 Predicted RNA methylas 38.8 36 0.00078 31.6 3.5 33 45-86 21-53 (252)
219 KOG1661 Protein-L-isoaspartate 38.6 29 0.00063 32.7 2.9 18 67-84 84-101 (237)
220 PF03141 Methyltransf_29: Puta 38.0 99 0.0021 32.7 7.0 131 22-234 331-465 (506)
221 PRK11760 putative 23S rRNA C24 37.4 22 0.00048 35.8 2.1 20 65-84 211-230 (357)
222 KOG4589 Cell division protein 36.0 48 0.001 30.7 3.8 20 66-85 70-89 (232)
223 KOG2920 Predicted methyltransf 33.7 35 0.00075 33.3 2.7 35 43-84 100-135 (282)
224 KOG0820 Ribosomal RNA adenine 33.7 1.7E+02 0.0036 28.8 7.3 52 64-116 57-120 (315)
225 cd08788 CARD_NOD2_2_CARD15 Cas 32.9 30 0.00066 27.3 1.8 39 257-296 15-53 (81)
226 COG0275 Predicted S-adenosylme 31.6 44 0.00096 33.0 3.1 36 204-239 212-247 (314)
227 COG0144 Sun tRNA and rRNA cyto 31.5 4.5E+02 0.0098 26.3 10.5 134 66-239 157-291 (355)
228 COG4627 Uncharacterized protei 31.3 1E+02 0.0022 27.8 4.9 37 203-239 48-89 (185)
229 PF03962 Mnd1: Mnd1 family; I 30.3 34 0.00075 31.3 2.0 35 256-290 30-64 (188)
230 PF02475 Met_10: Met-10+ like- 30.2 1.2E+02 0.0027 27.9 5.7 44 66-124 102-145 (200)
231 TIGR00730 conserved hypothetic 29.1 81 0.0018 28.5 4.2 41 254-297 137-177 (178)
232 PF01596 Methyltransf_3: O-met 28.5 1.1E+02 0.0023 28.4 5.0 22 65-86 45-66 (205)
233 PHA03297 envelope glycoprotein 27.8 25 0.00053 31.0 0.6 60 63-122 37-106 (185)
234 COG5124 Protein predicted to b 27.4 42 0.00092 30.5 2.0 33 256-288 43-75 (209)
235 PF02636 Methyltransf_28: Puta 26.7 56 0.0012 30.9 2.9 23 65-87 18-40 (252)
236 TIGR00006 S-adenosyl-methyltra 26.5 63 0.0014 31.9 3.2 34 206-239 210-243 (305)
237 smart00400 ZnF_CHCC zinc finge 25.7 58 0.0013 23.2 2.1 21 67-87 22-42 (55)
238 PF05958 tRNA_U5-meth_tr: tRNA 25.5 1E+02 0.0023 30.8 4.7 17 68-84 199-215 (352)
239 KOG2915 tRNA(1-methyladenosine 25.5 6.4E+02 0.014 24.9 9.7 21 67-87 107-127 (314)
240 COG2609 AceE Pyruvate dehydrog 25.1 5.4E+02 0.012 28.7 9.9 98 201-315 197-301 (887)
241 TIGR00308 TRM1 tRNA(guanine-26 25.0 86 0.0019 31.9 4.0 66 26-114 14-79 (374)
242 PF03269 DUF268: Caenorhabditi 25.0 68 0.0015 29.0 2.8 17 223-239 98-115 (177)
243 PF09597 IGR: IGR protein moti 24.7 71 0.0015 23.6 2.4 27 205-231 13-39 (57)
244 PF02268 TFIIA_gamma_N: Transc 24.2 63 0.0014 23.1 2.0 19 256-274 13-31 (49)
245 PF10357 Kin17_mid: Domain of 23.6 82 0.0018 27.1 3.0 21 203-223 13-33 (127)
246 PHA00457 inhibitor of host bac 22.9 79 0.0017 23.5 2.3 30 277-307 25-58 (63)
247 PF03641 Lysine_decarbox: Poss 22.8 86 0.0019 26.7 3.0 38 255-295 96-133 (133)
248 PF02375 JmjN: jmjN domain; I 22.2 38 0.00082 22.2 0.5 15 282-296 1-15 (34)
249 PF02527 GidB: rRNA small subu 21.7 1.1E+02 0.0023 27.9 3.5 30 68-112 51-80 (184)
250 COG4798 Predicted methyltransf 21.6 1.2E+02 0.0026 28.4 3.8 19 66-84 49-67 (238)
251 KOG1501 Arginine N-methyltrans 21.3 76 0.0016 33.2 2.7 22 65-86 66-87 (636)
252 PF01795 Methyltransf_5: MraW 20.8 68 0.0015 31.8 2.2 29 210-238 215-243 (310)
253 PF04816 DUF633: Family of unk 20.7 57 0.0012 30.2 1.6 41 69-124 1-41 (205)
254 COG1565 Uncharacterized conser 20.6 1.8E+02 0.004 29.5 5.2 24 64-87 76-99 (370)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=8.3e-105 Score=790.00 Aligned_cols=383 Identities=78% Similarity=1.243 Sum_probs=344.4
Q ss_pred CCCCCCCceecccchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcch
Q 016644 1 MAPKGNDVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNT 80 (385)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NS 80 (385)
|+|||+.+.++.|+++++|||+||+|++||++||.+|++++..++|+|+++|++++...+ +.++++|||||||+|+||
T Consensus 1 ~~~~~~~~~~~~m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~--p~~~~~iaDlGcs~G~nt 78 (386)
T PLN02668 1 MAPKGDNVVVSNMKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSS--PEVPFTAVDLGCSSGSNT 78 (386)
T ss_pred CCCCCCccceecceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--CCcceeEEEecCCCCccH
Confidence 899999999999999999999999999999999999999999999999999988854211 125899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCc---hhHhhhcCcCCceeeccccCccccccC
Q 016644 81 LYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSS---MEECLASDTHRSYFAAGVPGSFYRRLF 157 (385)
Q Consensus 81 l~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~---~~~~~~~~~~~~~f~~~vpgSFy~rLf 157 (385)
+.++++||++|+++|.+.+.++||+||||||||+||||+||++|+.++++ .++|++....++||++|||||||+|||
T Consensus 79 l~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLf 158 (386)
T PLN02668 79 IHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLF 158 (386)
T ss_pred HHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCcccccccc
Confidence 99999999999999998777889999999999999999999999987654 233333333457999999999999999
Q ss_pred CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEec
Q 016644 158 PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCL 237 (385)
Q Consensus 158 P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~ 237 (385)
|++|+||+||++||||||++|+.+.|+.++.||||+||+++++|.|.+||++||++||..||++||+||+|||+||++++
T Consensus 159 P~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~ 238 (386)
T PLN02668 159 PARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCL 238 (386)
T ss_pred CCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcc
Q 016644 238 GRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVV 317 (385)
Q Consensus 238 g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~ 317 (385)
||++.++..+++.+..|+..+.++|++||.||+|++||+|+||+|+|+||++||+++|+++|+|+|+++|+|+..++...
T Consensus 239 Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~~~ 318 (386)
T PLN02668 239 GRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPLVV 318 (386)
T ss_pred cCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcccc
Confidence 99877666554344445323899999999999999999999999999999999999999999999999999996655434
Q ss_pred cCCCchhhhHHHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhchhHhhhcccceEEEEEEEeeC
Q 016644 318 KQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCYAKELIEQLQFFHIVASLSFA 385 (385)
Q Consensus 318 ~~~~d~~~~~~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 385 (385)
+.+.|+.+.++.+|+++||++||++++|||++|+|+||+||+++++++.....++++++++++||.++
T Consensus 319 ~~~~d~~~~g~~~a~~~RA~~E~ll~~HFG~~i~D~lF~r~~~~v~~~~~~~~~~~~~~~~~~sL~~~ 386 (386)
T PLN02668 319 NEPDDAAEVGRAMANSCRSVAGVLVDAHIGEELSNELFLRVERRATSHAKELLEKLQFFHIVASLSFA 386 (386)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhcccCceEEEEEEEecC
Confidence 44567778899999999999999999999999999999999999999844323789999999999874
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=1.3e-89 Score=677.29 Aligned_cols=324 Identities=45% Similarity=0.749 Sum_probs=264.1
Q ss_pred HHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcC-CCCCceeEEecCCCCCchHHHHhcCCC
Q 016644 48 LRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASG-YEPPEFSAFFSDLPSNDFNTLFQLLPP 126 (385)
Q Consensus 48 l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~-~~~p~~qv~~nDLp~NDFn~lF~~l~~ 126 (385)
|++||.+++... ..+++++|||||||+|+||+.+++.||++|+++|.+.+ +++|+|||||||||+||||+||++|+.
T Consensus 1 ~~~ai~~~~~~~--~~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~ 78 (334)
T PF03492_consen 1 LEEAIKELYNSS--NNPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPS 78 (334)
T ss_dssp -HHHHHHHHHST--TTTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHH
T ss_pred ChHHHHHHHhcC--CCCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChh
Confidence 578888887532 34689999999999999999999999999999998876 788999999999999999999999986
Q ss_pred CCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCH-HHHH
Q 016644 127 IGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANE-HTAN 205 (385)
Q Consensus 127 ~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~-~v~~ 205 (385)
+.+ ++. +.++||++|||||||+||||++|+||+||++||||||++|+.+.++.+++||||+||++.++| +|.+
T Consensus 79 ~~~---~~~---~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ 152 (334)
T PF03492_consen 79 FQQ---SLK---KFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAK 152 (334)
T ss_dssp HHH---HHH---HTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHH
T ss_pred hhh---ccC---CCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHH
Confidence 422 222 267999999999999999999999999999999999999999999999999999999996555 5999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccccc
Q 016644 206 AYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYA 285 (385)
Q Consensus 206 ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ 285 (385)
||++||++||.+||++||+||+|||+||++++||++..+...+ .+ ..+++|.++|++||.||+|+++++|+||+|+|+
T Consensus 153 ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~-~~-~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ 230 (334)
T PF03492_consen 153 AYAKQFQKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTG-SC-MLWDLLADALRDMVAEGLISEEKVDSFNIPIYF 230 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTT-CC-CHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB-
T ss_pred HHHHHHHHHHHHHHHHhhheeccCcEEEEEEeeccccccccCC-cc-hHHHHHHHHHHHHHHcCCcCHHHhhceeCCccC
Confidence 9999999999999999999999999999999999985554432 22 344899999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCceEecEEEEEeCCCCCccc---CCCchhhhHHHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHHh
Q 016644 286 SSLQEFKEVVEANGSFVINKLEVFKGGSPLVVK---QPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRG 362 (385)
Q Consensus 286 ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~---~~~d~~~~~~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~ 362 (385)
||++||+++|+++|+|+|+++|.++.+++.... ...|..++|+.+++++|||+||++.+|||++|+|+||+||++++
T Consensus 231 ps~eEv~~~I~~~gsF~I~~le~~~~~~~~~~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~hfG~ei~D~LF~r~~~~v 310 (334)
T PF03492_consen 231 PSPEEVRAIIEEEGSFEIEKLELFEQPWWSVPDDESWKEDAKEYARNVANYIRAVFEPLLKAHFGEEIMDELFERYAKKV 310 (334)
T ss_dssp --HHHHHHHHHHHTSEEEEEEEEEEEETCCTCTTT-STTTHHCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCEEEEEEEEEeecccccchhhhcccchhhhHHHHHHhHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 999999999999999999999999844332211 23456789999999999999999999999999999999999999
Q ss_pred hchhHhhhcc---cceEEEEEEEe
Q 016644 363 SCYAKELIEQ---LQFFHIVASLS 383 (385)
Q Consensus 363 ~~~~~~~~~~---~~~~~~~~~l~ 383 (385)
++++. .++ .++++++++|+
T Consensus 311 ~~~~~--~~~~~~~~~~~i~~~L~ 332 (334)
T PF03492_consen 311 AEHLE--KEKSRNMKFVNIVVSLT 332 (334)
T ss_dssp HHHHH--HTHTT-BEEEEEEEEEE
T ss_pred HHHHH--HhhccCCCcEEEEEEEe
Confidence 99943 444 88999999996
No 3
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.57 E-value=1.4e-13 Score=131.10 Aligned_cols=225 Identities=14% Similarity=0.119 Sum_probs=141.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeE
Q 016644 28 ASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSA 107 (385)
Q Consensus 28 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv 107 (385)
..|.+++..|.+.+..++..+.. ....+|+|+|||+|..+..+.. ++ |..+|
T Consensus 5 ~~y~~~~~~~~~~~~~ll~~l~~-------------~~~~~vLDlGcG~G~~~~~l~~--------~~-------p~~~v 56 (255)
T PRK14103 5 DVYLAFADHRGRPFYDLLARVGA-------------ERARRVVDLGCGPGNLTRYLAR--------RW-------PGAVI 56 (255)
T ss_pred HHHHHHHhHhhCHHHHHHHhCCC-------------CCCCEEEEEcCCCCHHHHHHHH--------HC-------CCCEE
Confidence 57999999998766554443321 2457999999999988776642 22 45688
Q ss_pred EecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhccccc
Q 016644 108 FFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSM 187 (385)
Q Consensus 108 ~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~ 187 (385)
+.-|+-.+..... +.. +--|. .+++ +.+.|++++|+|+|+.++||+.+.+..+
T Consensus 57 ~gvD~s~~~~~~a-~~~----------------~~~~~---~~d~-~~~~~~~~fD~v~~~~~l~~~~d~~~~l------ 109 (255)
T PRK14103 57 EALDSSPEMVAAA-RER----------------GVDAR---TGDV-RDWKPKPDTDVVVSNAALQWVPEHADLL------ 109 (255)
T ss_pred EEEECCHHHHHHH-Hhc----------------CCcEE---EcCh-hhCCCCCCceEEEEehhhhhCCCHHHHH------
Confidence 9999754332221 110 01122 2353 5667789999999999999987533332
Q ss_pred ccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH
Q 016644 188 AYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ 267 (385)
Q Consensus 188 ~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~ 267 (385)
+.-++.|+|||+|++.+.+... .. ....+..+..
T Consensus 110 --------------------------------~~~~~~LkpgG~l~~~~~~~~~----------~~----~~~~~~~~~~ 143 (255)
T PRK14103 110 --------------------------------VRWVDELAPGSWIAVQVPGNFD----------AP----SHAAVRALAR 143 (255)
T ss_pred --------------------------------HHHHHhCCCCcEEEEEcCCCcC----------Ch----hHHHHHHHhc
Confidence 4457889999999998765311 00 0111222221
Q ss_pred cCCcccc-cccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhh-hhhHHhh
Q 016644 268 EGLITGE-KRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVA-GVLVDAH 345 (385)
Q Consensus 268 eG~i~~e-~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~-ep~l~~h 345 (385)
++..... .-..+..+..+.+++++...+++.| |++...+.... .++ . ....+..|+++.. .++++ .
T Consensus 144 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~-~~~-----~----~~~~~~~~~~~~~~~~~~~-~ 211 (255)
T PRK14103 144 REPWAKLLRDIPFRVGAVVQTPAGYAELLTDAG-CKVDAWETTYV-HQL-----T----GEDPVLDWITGTALRPVRE-R 211 (255)
T ss_pred cCchhHHhcccccccCcCCCCHHHHHHHHHhCC-CeEEEEeeeee-eeC-----C----Cchhhhhhhhccchhhhhh-h
Confidence 1111100 0011234556789999999999999 98765554221 011 1 2356777888654 67777 9
Q ss_pred hChHHHHHHHHHHHHHhhch
Q 016644 346 IGDQLSEELFKRVERRGSCY 365 (385)
Q Consensus 346 fg~~i~delf~r~~~~~~~~ 365 (385)
++++..+++.+.+.+.+++.
T Consensus 212 l~~~~~~~~~~~~~~~l~~~ 231 (255)
T PRK14103 212 LSDDSWEQFRAELIPLLREA 231 (255)
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 99998999999999988876
No 4
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.54 E-value=2.6e-13 Score=129.19 Aligned_cols=227 Identities=15% Similarity=0.174 Sum_probs=141.1
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeE
Q 016644 28 ASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSA 107 (385)
Q Consensus 28 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv 107 (385)
..|.+++..|.+....++..+. . .+..+|+|+|||+|..+..+... + |..+|
T Consensus 7 ~~Y~~~~~~~~~~~~~ll~~~~-------~------~~~~~vLDiGcG~G~~~~~la~~--------~-------~~~~v 58 (258)
T PRK01683 7 SLYLKFEDERTRPARDLLARVP-------L------ENPRYVVDLGCGPGNSTELLVER--------W-------PAARI 58 (258)
T ss_pred HHHHHHHHHhhcHHHHHHhhCC-------C------cCCCEEEEEcccCCHHHHHHHHH--------C-------CCCEE
Confidence 5799999888766555443321 1 23578999999999998777532 2 45789
Q ss_pred EecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhccccc
Q 016644 108 FFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSM 187 (385)
Q Consensus 108 ~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~ 187 (385)
+..|+........-+.++. .-|. .+++ ..+.|++++|+++|+.++||+.+.+.
T Consensus 59 ~gvD~s~~~i~~a~~~~~~---------------~~~~---~~d~-~~~~~~~~fD~v~~~~~l~~~~d~~~-------- 111 (258)
T PRK01683 59 TGIDSSPAMLAEARSRLPD---------------CQFV---EADI-ASWQPPQALDLIFANASLQWLPDHLE-------- 111 (258)
T ss_pred EEEECCHHHHHHHHHhCCC---------------CeEE---ECch-hccCCCCCccEEEEccChhhCCCHHH--------
Confidence 9999865443333222221 1122 2343 34567789999999999999865332
Q ss_pred ccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH
Q 016644 188 AYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ 267 (385)
Q Consensus 188 ~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~ 267 (385)
+|+.-.+.|+|||++++++.+... .. ....++++..
T Consensus 112 ------------------------------~l~~~~~~LkpgG~~~~~~~~~~~----------~~----~~~~~~~~~~ 147 (258)
T PRK01683 112 ------------------------------LFPRLVSLLAPGGVLAVQMPDNLD----------EP----SHVLMREVAE 147 (258)
T ss_pred ------------------------------HHHHHHHhcCCCcEEEEECCCCCC----------CH----HHHHHHHHHc
Confidence 335567899999999998643210 00 1122233322
Q ss_pred cCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhh-hhhHHhhh
Q 016644 268 EGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVA-GVLVDAHI 346 (385)
Q Consensus 268 eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~-ep~l~~hf 346 (385)
.......-...-..+.++++++++...+...| +.++..+... ..++ . ....+..|+++.. .+++. ++
T Consensus 148 ~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~v~~~~~~~-~~~~--~-------~~~~~~~~~~~~~~~~~~~-~l 215 (258)
T PRK01683 148 NGPWEQNLPDRGARRAPLPPPHAYYDALAPAA-CRVDIWHTTY-YHPM--P-------SAQAIVEWVKGTGLRPFLD-PL 215 (258)
T ss_pred cCchHHHhccccccCcCCCCHHHHHHHHHhCC-Cceeeeeeee-eeec--C-------CchhhhhhhhhccHHHHHh-hC
Confidence 11111100011113457789999999999999 6554433321 1122 1 2366777888754 67765 99
Q ss_pred ChHHHHHHHHHHHHHhhch
Q 016644 347 GDQLSEELFKRVERRGSCY 365 (385)
Q Consensus 347 g~~i~delf~r~~~~~~~~ 365 (385)
+++..+++.++|.+.+.+.
T Consensus 216 ~~~~~~~f~~~~~~~~~~~ 234 (258)
T PRK01683 216 TESEQAAFLAAYLARIAEA 234 (258)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988876
No 5
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.46 E-value=1.9e-12 Score=122.91 Aligned_cols=179 Identities=15% Similarity=0.197 Sum_probs=120.5
Q ss_pred ecccchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHH
Q 016644 10 VSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIK 89 (385)
Q Consensus 10 ~~~~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~ 89 (385)
.++-.|++.|.... .+|++++.+|+.+...+...+.. ...-+|+|+|||+|.++..+.
T Consensus 4 ~~k~~i~~~F~~aa----~~Y~~~~~~q~~~a~~l~~~l~~-------------~~~~~vLDiGcG~G~~~~~l~----- 61 (251)
T PRK10258 4 VNKQAIAAAFGRAA----AHYEQHAELQRQSADALLAMLPQ-------------RKFTHVLDAGCGPGWMSRYWR----- 61 (251)
T ss_pred cCHHHHHHHHHHHH----HhHhHHHHHHHHHHHHHHHhcCc-------------cCCCeEEEeeCCCCHHHHHHH-----
Confidence 44556888999888 69999999999988888766542 134679999999998776553
Q ss_pred HHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEccc
Q 016644 90 HISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAF 169 (385)
Q Consensus 90 ~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~ 169 (385)
+ ...+++..|+-...-...-+..+ ...|+. +++-.--+|++++|+|+|+.
T Consensus 62 ---~---------~~~~v~~~D~s~~~l~~a~~~~~---------------~~~~~~---~d~~~~~~~~~~fD~V~s~~ 111 (251)
T PRK10258 62 ---E---------RGSQVTALDLSPPMLAQARQKDA---------------ADHYLA---GDIESLPLATATFDLAWSNL 111 (251)
T ss_pred ---H---------cCCeEEEEECCHHHHHHHHhhCC---------------CCCEEE---cCcccCcCCCCcEEEEEECc
Confidence 1 12578889985433332222211 011222 34333237889999999999
Q ss_pred ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCC
Q 016644 170 SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGG 249 (385)
Q Consensus 170 alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~ 249 (385)
++||+.+.+..+ ..-.+-|+|||+++++.++.++
T Consensus 112 ~l~~~~d~~~~l--------------------------------------~~~~~~Lk~gG~l~~~~~~~~~-------- 145 (251)
T PRK10258 112 AVQWCGNLSTAL--------------------------------------RELYRVVRPGGVVAFTTLVQGS-------- 145 (251)
T ss_pred hhhhcCCHHHHH--------------------------------------HHHHHHcCCCeEEEEEeCCCCc--------
Confidence 999987644433 4467899999999999988742
Q ss_pred CccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644 250 PGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI 303 (385)
Q Consensus 250 ~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i 303 (385)
. .-+.++|..+-. .....-+++.+|+...+...+ +++
T Consensus 146 ---~--~el~~~~~~~~~-----------~~~~~~~~~~~~l~~~l~~~~-~~~ 182 (251)
T PRK10258 146 ---L--PELHQAWQAVDE-----------RPHANRFLPPDAIEQALNGWR-YQH 182 (251)
T ss_pred ---h--HHHHHHHHHhcc-----------CCccccCCCHHHHHHHHHhCC-cee
Confidence 1 225666654311 112345778999999998766 543
No 6
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.37 E-value=8.4e-12 Score=116.08 Aligned_cols=216 Identities=17% Similarity=0.238 Sum_probs=138.4
Q ss_pred chhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeE
Q 016644 28 ASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSA 107 (385)
Q Consensus 28 ~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv 107 (385)
.+|++.+..|+.+...+.+.+.... ..++.+|+|+|||+|..+..+.... |..++
T Consensus 7 ~~y~~~~~~q~~~~~~l~~~~~~~~----------~~~~~~vLDlG~G~G~~~~~l~~~~---------------~~~~~ 61 (240)
T TIGR02072 7 KTYDRHAKIQREMAKRLLALLKEKG----------IFIPASVLDIGCGTGYLTRALLKRF---------------PQAEF 61 (240)
T ss_pred hchhHHHHHHHHHHHHHHHHhhhhc----------cCCCCeEEEECCCccHHHHHHHHhC---------------CCCcE
Confidence 6899999999998888888776421 1245789999999999887765322 45678
Q ss_pred EecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhccccc
Q 016644 108 FFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSM 187 (385)
Q Consensus 108 ~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~ 187 (385)
+..|+.....+...+.+++ +-.|+ -+++.+..+|++++|+++++.++||+.+..
T Consensus 62 ~~~D~~~~~~~~~~~~~~~--------------~~~~~---~~d~~~~~~~~~~fD~vi~~~~l~~~~~~~--------- 115 (240)
T TIGR02072 62 IALDISAGMLAQAKTKLSE--------------NVQFI---CGDAEKLPLEDSSFDLIVSNLALQWCDDLS--------- 115 (240)
T ss_pred EEEeChHHHHHHHHHhcCC--------------CCeEE---ecchhhCCCCCCceeEEEEhhhhhhccCHH---------
Confidence 8999865555444443331 11122 235555557899999999999999985532
Q ss_pred ccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH
Q 016644 188 AYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ 267 (385)
Q Consensus 188 ~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~ 267 (385)
.+|....+-|+|||++++..++... + ..+...+..
T Consensus 116 -----------------------------~~l~~~~~~L~~~G~l~~~~~~~~~------------~-~~~~~~~~~--- 150 (240)
T TIGR02072 116 -----------------------------QALSELARVLKPGGLLAFSTFGPGT------------L-HELRQSFGQ--- 150 (240)
T ss_pred -----------------------------HHHHHHHHHcCCCcEEEEEeCCccC------------H-HHHHHHHHH---
Confidence 2446678999999999998766531 1 112333221
Q ss_pred cCCcccccccccccccccCCHHHHHHHHHhcCceEecEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhhhHH-hhh
Q 016644 268 EGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVD-AHI 346 (385)
Q Consensus 268 eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep~l~-~hf 346 (385)
....+++.+++...+.+. |....++...-. ...+ ....+..++|........ .+.
T Consensus 151 -------------~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~----~~~~-----~~~~~~~~l~~~g~~~~~~~~~ 206 (240)
T TIGR02072 151 -------------HGLRYLSLDELKALLKNS--FELLTLEEELIT----LSFD-----DPLDVLRHLKKTGANGLSSGRT 206 (240)
T ss_pred -------------hccCCCCHHHHHHHHHHh--cCCcEEEEEEEE----EeCC-----CHHHHHHHHHHhccCcCCCCCC
Confidence 123467888999888775 776665544311 1112 235677777776653332 235
Q ss_pred ChHHHHHHHHHHHHHhh
Q 016644 347 GDQLSEELFKRVERRGS 363 (385)
Q Consensus 347 g~~i~delf~r~~~~~~ 363 (385)
+.+...++.+.|.+...
T Consensus 207 ~~~~~~~~~~~~~~~~~ 223 (240)
T TIGR02072 207 SRKQLKAFLERYEQEFQ 223 (240)
T ss_pred CHHHHHHHHHHHHHhhc
Confidence 66666677776665553
No 7
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.20 E-value=2.4e-10 Score=104.94 Aligned_cols=203 Identities=15% Similarity=0.187 Sum_probs=139.0
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
.+-+|.|||||.|+-|.++. +++ |..++.--|-..-+.......||+. -|
T Consensus 30 ~~~~v~DLGCGpGnsTelL~--------~Rw-------P~A~i~GiDsS~~Mla~Aa~rlp~~---------------~f 79 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLA--------RRW-------PDAVITGIDSSPAMLAKAAQRLPDA---------------TF 79 (257)
T ss_pred ccceeeecCCCCCHHHHHHH--------HhC-------CCCeEeeccCCHHHHHHHHHhCCCC---------------ce
Confidence 57899999999999999887 666 7788888887776777776667641 01
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
.-| + ....-|....|++||+.+||||.+.|..+. .--.
T Consensus 80 ~~a---D-l~~w~p~~~~dllfaNAvlqWlpdH~~ll~--------------------------------------rL~~ 117 (257)
T COG4106 80 EEA---D-LRTWKPEQPTDLLFANAVLQWLPDHPELLP--------------------------------------RLVS 117 (257)
T ss_pred ecc---c-HhhcCCCCccchhhhhhhhhhccccHHHHH--------------------------------------HHHH
Confidence 111 2 356689999999999999999999887762 2357
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccc-cccccCCHHHHHHHHHhcCceEe
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFN-IPVYASSLQEFKEVVEANGSFVI 303 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~-~P~y~ps~~Ev~~~le~~gsF~i 303 (385)
+|.|||.|.+.+++--. +--..++++.++++-... ++.++. .----+++.-|-.++...+ -+|
T Consensus 118 ~L~Pgg~LAVQmPdN~d--------------epsH~~mr~~A~~~p~~~-~l~~~~~~r~~v~s~a~Yy~lLa~~~-~rv 181 (257)
T COG4106 118 QLAPGGVLAVQMPDNLD--------------EPSHRLMRETADEAPFAQ-ELGGRGLTRAPLPSPAAYYELLAPLA-CRV 181 (257)
T ss_pred hhCCCceEEEECCCccC--------------chhHHHHHHHHhcCchhh-hhCccccccCCCCCHHHHHHHhCccc-cee
Confidence 89999999999976521 112334444444332211 111111 1223468888888887765 333
Q ss_pred cEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhh-hhHHhhhChHHHHHHHHHHHHHhhchh
Q 016644 304 NKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAG-VLVDAHIGDQLSEELFKRVERRGSCYA 366 (385)
Q Consensus 304 ~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~e-p~l~~hfg~~i~delf~r~~~~~~~~~ 366 (385)
+--++.- ..+.+ .++.+..|+++..- |+++ .++++-...+.++|..++++++
T Consensus 182 DiW~T~Y-----~h~l~-----~a~aIvdWvkgTgLrP~L~-~L~e~~~~~FL~~Y~~~l~~aY 234 (257)
T COG4106 182 DIWHTTY-----YHQLP-----GADAIVDWVKGTGLRPYLD-RLDEEERQRFLDRYLALLAEAY 234 (257)
T ss_pred eeeeeec-----cccCC-----Cccchhhheeccccceecc-ccCHHHHHHHHHHHHHHHHHhC
Confidence 2222211 11222 45789999998875 8887 8999999999999999999874
No 8
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.16 E-value=3.2e-10 Score=107.02 Aligned_cols=201 Identities=13% Similarity=0.219 Sum_probs=128.2
Q ss_pred ccchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHH
Q 016644 12 DRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHI 91 (385)
Q Consensus 12 ~~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i 91 (385)
...|+++|+-.. ..|+....+=.-.+. .-+-++.+..+.. ++..+|||+|||||.-|+.+...+
T Consensus 10 ~~~v~~vF~~ia----~~YD~~n~~~S~g~~--~~Wr~~~i~~~~~------~~g~~vLDva~GTGd~a~~~~k~~---- 73 (238)
T COG2226 10 QEKVQKVFDKVA----KKYDLMNDLMSFGLH--RLWRRALISLLGI------KPGDKVLDVACGTGDMALLLAKSV---- 73 (238)
T ss_pred HHHHHHHHHhhH----HHHHhhcccccCcch--HHHHHHHHHhhCC------CCCCEEEEecCCccHHHHHHHHhc----
Confidence 356788888877 688876621111111 1223333333321 246999999999999999987443
Q ss_pred HHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCcccccc-CCCCcccEEEcccc
Q 016644 92 SKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRL-FPTRSIDFFHSAFS 170 (385)
Q Consensus 92 ~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rL-fP~~Svd~~~Ss~a 170 (385)
+.-+|+.-|...++.+..-+.+... +...--|+.| + .++| ||++|+|++.+++.
T Consensus 74 -----------g~g~v~~~D~s~~ML~~a~~k~~~~----------~~~~i~fv~~---d-Ae~LPf~D~sFD~vt~~fg 128 (238)
T COG2226 74 -----------GTGEVVGLDISESMLEVAREKLKKK----------GVQNVEFVVG---D-AENLPFPDNSFDAVTISFG 128 (238)
T ss_pred -----------CCceEEEEECCHHHHHHHHHHhhcc----------CccceEEEEe---c-hhhCCCCCCccCEEEeeeh
Confidence 3578999999888888776655431 0011124444 6 5666 99999999999999
Q ss_pred cccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCC
Q 016644 171 LHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGP 250 (385)
Q Consensus 171 lHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~ 250 (385)
||++.+.+..|.+ -+|.|||||++++.=+.+.....
T Consensus 129 lrnv~d~~~aL~E--------------------------------------~~RVlKpgG~~~vle~~~p~~~~------ 164 (238)
T COG2226 129 LRNVTDIDKALKE--------------------------------------MYRVLKPGGRLLVLEFSKPDNPV------ 164 (238)
T ss_pred hhcCCCHHHHHHH--------------------------------------HHHhhcCCeEEEEEEcCCCCchh------
Confidence 9999998888743 68999999999888877752211
Q ss_pred ccchHHHHHHHHHHHHH------cCCccccccccc----ccccccCCHHHHHHHHHhcCceEecE
Q 016644 251 GILFGTHFQDAWNDLVQ------EGLITGEKRDSF----NIPVYASSLQEFKEVVEANGSFVINK 305 (385)
Q Consensus 251 ~~~~~~~l~~al~~mv~------eG~i~~e~~d~f----~~P~y~ps~~Ev~~~le~~gsF~i~~ 305 (385)
+..++..+-- -|.+-.+..+.+ ...-.+|+.+++...+++.| |+...
T Consensus 165 -------~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~g-f~~i~ 221 (238)
T COG2226 165 -------LRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAG-FEEVR 221 (238)
T ss_pred -------hHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcC-ceEEe
Confidence 1111111111 111111111111 23346899999999999999 87555
No 9
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.11 E-value=9.6e-10 Score=105.52 Aligned_cols=209 Identities=13% Similarity=0.182 Sum_probs=117.7
Q ss_pred CceecccchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHH
Q 016644 7 DVIVSDRKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDV 86 (385)
Q Consensus 7 ~~~~~~~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ 86 (385)
|+..---.++..|.-.+ ..|++....+......... +..++.+.. .+..+|+|+|||+|..+..+..
T Consensus 27 ~~~~~~~~v~~~f~~~A----~~YD~~~~~~s~g~~~~~r--~~~~~~~~~------~~~~~VLDlGcGtG~~~~~la~- 93 (261)
T PLN02233 27 DVVKCANERQALFNRIA----PVYDNLNDLLSLGQHRIWK--RMAVSWSGA------KMGDRVLDLCCGSGDLAFLLSE- 93 (261)
T ss_pred ChhhhHHHHHHHHHHhh----hHHHHhhhhhcCChhHHHH--HHHHHHhCC------CCCCEEEEECCcCCHHHHHHHH-
Confidence 55444445677888777 6899755554322222111 111111211 2357899999999998766542
Q ss_pred HHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-eeccccCcccccc-CCCCcccE
Q 016644 87 IIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-FAAGVPGSFYRRL-FPTRSIDF 164 (385)
Q Consensus 87 ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f~~~vpgSFy~rL-fP~~Svd~ 164 (385)
.+ .|.-+|+--|+-.++....-+..+.. ......++ |+.+ + .+.+ +|++++|+
T Consensus 94 -------~~------~~~~~V~gvD~S~~ml~~A~~r~~~~--------~~~~~~~i~~~~~---d-~~~lp~~~~sfD~ 148 (261)
T PLN02233 94 -------KV------GSDGKVMGLDFSSEQLAVAASRQELK--------AKSCYKNIEWIEG---D-ATDLPFDDCYFDA 148 (261)
T ss_pred -------Hh------CCCCEEEEEECCHHHHHHHHHHhhhh--------hhccCCCeEEEEc---c-cccCCCCCCCEeE
Confidence 22 13468899998776655543322200 00001122 3333 4 3445 88999999
Q ss_pred EEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCC
Q 016644 165 FHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADP 244 (385)
Q Consensus 165 ~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~ 244 (385)
+++++++||+.+.... |+.-++.|+|||++++.-+++.+.
T Consensus 149 V~~~~~l~~~~d~~~~--------------------------------------l~ei~rvLkpGG~l~i~d~~~~~~-- 188 (261)
T PLN02233 149 ITMGYGLRNVVDRLKA--------------------------------------MQEMYRVLKPGSRVSILDFNKSTQ-- 188 (261)
T ss_pred EEEecccccCCCHHHH--------------------------------------HHHHHHHcCcCcEEEEEECCCCCc--
Confidence 9999999998653333 355688999999999998876421
Q ss_pred CCCCCCccchHHHHHHHHHH-----HH-HcCCcccccccccc-cc---cccCCHHHHHHHHHhcCceEecEEE
Q 016644 245 TDQGGPGILFGTHFQDAWND-----LV-QEGLITGEKRDSFN-IP---VYASSLQEFKEVVEANGSFVINKLE 307 (385)
Q Consensus 245 ~~~~~~~~~~~~~l~~al~~-----mv-~eG~i~~e~~d~f~-~P---~y~ps~~Ev~~~le~~gsF~i~~le 307 (385)
.+...+..-+.. +. ..|. .+.+. ++ -.+++.+|+.+.+++.| |++.+..
T Consensus 189 --------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~y~~l~~s~~~f~s~~el~~ll~~aG-F~~~~~~ 247 (261)
T PLN02233 189 --------PFTTSMQEWMIDNVVVPVATGYGL-----AKEYEYLKSSINEYLTGEELEKLALEAG-FSSAKHY 247 (261)
T ss_pred --------HHHHHHHHHHHhhhhhHHHHHhCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHCC-CCEEEEE
Confidence 010111111111 10 0121 01110 01 23889999999999999 9865443
No 10
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.10 E-value=8.8e-09 Score=98.97 Aligned_cols=194 Identities=13% Similarity=0.110 Sum_probs=114.3
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|..+..+. +.+ ..+|+..|+..+.....-+.... ..+..|
T Consensus 52 ~~~~VLDiGcG~G~~a~~la--------~~~--------~~~v~giD~s~~~~~~a~~~~~~------------~~~i~~ 103 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYIN--------EKY--------GAHVHGVDICEKMVNIAKLRNSD------------KNKIEF 103 (263)
T ss_pred CCCEEEEEcCCCChhhHHHH--------hhc--------CCEEEEEECCHHHHHHHHHHcCc------------CCceEE
Confidence 45789999999999887664 111 35788999865544433332221 011123
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
+.+++...-+|++++|+|+|..++++++. .|...+|+.-++
T Consensus 104 ---~~~D~~~~~~~~~~FD~V~s~~~l~h~~~------------------------------------~d~~~~l~~i~r 144 (263)
T PTZ00098 104 ---EANDILKKDFPENTFDMIYSRDAILHLSY------------------------------------ADKKKLFEKCYK 144 (263)
T ss_pred ---EECCcccCCCCCCCeEEEEEhhhHHhCCH------------------------------------HHHHHHHHHHHH
Confidence 33466555589999999999888766531 123345567789
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~ 304 (385)
-|+|||+|+++-...... ..+ ...+....... ....++++++...+++.| |++.
T Consensus 145 ~LkPGG~lvi~d~~~~~~---------~~~----~~~~~~~~~~~------------~~~~~~~~~~~~~l~~aG-F~~v 198 (263)
T PTZ00098 145 WLKPNGILLITDYCADKI---------ENW----DEEFKAYIKKR------------KYTLIPIQEYGDLIKSCN-FQNV 198 (263)
T ss_pred HcCCCcEEEEEEeccccc---------cCc----HHHHHHHHHhc------------CCCCCCHHHHHHHHHHCC-CCee
Confidence 999999999987655321 011 12222222111 123579999999999999 8865
Q ss_pred EEEEEeCCCCCcccCCCchhhhHHHHH---HHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhch
Q 016644 305 KLEVFKGGSPLVVKQPDDAAEVGQALA---NSCRSVAGVLVDAHIGDQLSEELFKRVERRGSCY 365 (385)
Q Consensus 305 ~le~~~~~~~~~~~~~~d~~~~~~~~a---~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~~ 365 (385)
..+... + .....+. ..+++--+. +.+.+|++..+.+-.-+...+...
T Consensus 199 ~~~d~~-------~------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 248 (263)
T PTZ00098 199 VAKDIS-------D------YWLELLQVELKKLEEKKEE-FLKLYSEKEYNSLKDGWTRKIKDT 248 (263)
T ss_pred eEEeCc-------H------HHHHHHHHHHHHHHHhHHH-HHHhcCHHHHHHHHHHHHHHHHHh
Confidence 554321 0 0111122 122222223 334688887777777777666654
No 11
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.04 E-value=2.7e-09 Score=99.68 Aligned_cols=211 Identities=13% Similarity=0.161 Sum_probs=116.1
Q ss_pred cchhhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHH
Q 016644 13 RKLEMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHIS 92 (385)
Q Consensus 13 ~~~~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~ 92 (385)
+++.+.|+..+ ..|+..... -.......+.++.+..+.. .+..+|+|+|||+|..+..+.+.+
T Consensus 5 ~~~~~~f~~~a----~~yd~~~~~--~~~~~~~~~~~~~l~~l~~------~~~~~vLDiGcG~G~~~~~la~~~----- 67 (231)
T TIGR02752 5 ERVHKVFEKIY----KKYDRMNSV--ISFQRHKKWRKDTMKRMNV------QAGTSALDVCCGTADWSIALAEAV----- 67 (231)
T ss_pred HHHHHHHHHhh----hHHhHHHHH--hcCCchHHHHHHHHHhcCC------CCCCEEEEeCCCcCHHHHHHHHHh-----
Confidence 56778888877 588885431 0001111222222222321 234789999999999888776322
Q ss_pred HHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccc
Q 016644 93 KRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLH 172 (385)
Q Consensus 93 ~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alH 172 (385)
.|..+++..|+..+.....-+.+... ...++ ..+.++...--+|++++|+|+++.++|
T Consensus 68 ---------~~~~~v~gvD~s~~~~~~a~~~~~~~-----------~~~~v--~~~~~d~~~~~~~~~~fD~V~~~~~l~ 125 (231)
T TIGR02752 68 ---------GPEGHVIGLDFSENMLSVGRQKVKDA-----------GLHNV--ELVHGNAMELPFDDNSFDYVTIGFGLR 125 (231)
T ss_pred ---------CCCCEEEEEECCHHHHHHHHHHHHhc-----------CCCce--EEEEechhcCCCCCCCccEEEEecccc
Confidence 14468899998654433322222110 01121 123335444337889999999999999
Q ss_pred cccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCcc
Q 016644 173 WLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGI 252 (385)
Q Consensus 173 WLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~ 252 (385)
|+++... +|+...+-|+|||++++.-.+.++. .
T Consensus 126 ~~~~~~~--------------------------------------~l~~~~~~Lk~gG~l~~~~~~~~~~---------~ 158 (231)
T TIGR02752 126 NVPDYMQ--------------------------------------VLREMYRVVKPGGKVVCLETSQPTI---------P 158 (231)
T ss_pred cCCCHHH--------------------------------------HHHHHHHHcCcCeEEEEEECCCCCC---------h
Confidence 9865332 3355678899999998876554311 1
Q ss_pred chHHHHHHHHHHHHH--cCCccccccc---ccccccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644 253 LFGTHFQDAWNDLVQ--EGLITGEKRD---SFNIPVYASSLQEFKEVVEANGSFVINKLEVFK 310 (385)
Q Consensus 253 ~~~~~l~~al~~mv~--eG~i~~e~~d---~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~~ 310 (385)
.+.......+..+.. .+.+.....+ -......+|+.+|++..+++.| |++.+++.+.
T Consensus 159 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG-f~~~~~~~~~ 220 (231)
T TIGR02752 159 GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAG-FKDVEVKSYT 220 (231)
T ss_pred HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC-CCeeEEEEcc
Confidence 110111111111100 0011000000 0012346889999999999999 9988877664
No 12
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.02 E-value=1.1e-08 Score=106.05 Aligned_cols=193 Identities=15% Similarity=0.191 Sum_probs=119.9
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|..++.+.+ . ...+|+--|+........-+.... ...+--|
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~--------~--------~~~~v~gvDiS~~~l~~A~~~~~~-----------~~~~v~~ 318 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAE--------N--------FDVHVVGIDLSVNMISFALERAIG-----------RKCSVEF 318 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHH--------h--------cCCEEEEEECCHHHHHHHHHHhhc-----------CCCceEE
Confidence 346899999999987765542 1 135788889854332222111110 0011123
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
.. +++....+|++++|+|+|..+++|+.+.+. +|+.-++
T Consensus 319 ~~---~d~~~~~~~~~~fD~I~s~~~l~h~~d~~~--------------------------------------~l~~~~r 357 (475)
T PLN02336 319 EV---ADCTKKTYPDNSFDVIYSRDTILHIQDKPA--------------------------------------LFRSFFK 357 (475)
T ss_pred EE---cCcccCCCCCCCEEEEEECCcccccCCHHH--------------------------------------HHHHHHH
Confidence 33 366666688999999999999999865333 3355688
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~ 304 (385)
-|+|||+|++..+.+....+. ..+...+. ..| ...++.+++.+.+++.| |++.
T Consensus 358 ~LkpgG~l~i~~~~~~~~~~~----------~~~~~~~~---~~g-------------~~~~~~~~~~~~l~~aG-F~~i 410 (475)
T PLN02336 358 WLKPGGKVLISDYCRSPGTPS----------PEFAEYIK---QRG-------------YDLHDVQAYGQMLKDAG-FDDV 410 (475)
T ss_pred HcCCCeEEEEEEeccCCCCCc----------HHHHHHHH---hcC-------------CCCCCHHHHHHHHHHCC-Ceee
Confidence 999999999998776432111 11111111 111 34678999999999999 9987
Q ss_pred EEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhh--hhHHhhhChHHHHHHHHHHHHHhhch
Q 016644 305 KLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAG--VLVDAHIGDQLSEELFKRVERRGSCY 365 (385)
Q Consensus 305 ~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~e--p~l~~hfg~~i~delf~r~~~~~~~~ 365 (385)
.++.+. ..+...++.|...+.. .-+...+|++..+.+...+.+.+...
T Consensus 411 ~~~d~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 460 (475)
T PLN02336 411 IAEDRT-------------DQFLQVLQRELDAVEKEKDEFISDFSEEDYNDIVGGWKAKLVRS 460 (475)
T ss_pred eeecch-------------HHHHHHHHHHHHHHHhCHHHHHHhcCHHHHHHHHHhHHHHHhhh
Confidence 655432 1134444444444422 12334788988888888888888765
No 13
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.99 E-value=3.6e-09 Score=99.84 Aligned_cols=164 Identities=16% Similarity=0.165 Sum_probs=98.7
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
...+|+|+|||+|.++..+.+.+ ..|..+++.-|+-.+.....-+.+... ....++
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~-------------~~p~~~v~gvD~s~~ml~~a~~~~~~~----------~~~~~v- 108 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNI-------------NQPNVKIIGIDNSQPMVERCRQHIAAY----------HSEIPV- 108 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhc-------------CCCCCeEEEEeCCHHHHHHHHHHHHhc----------CCCCCe-
Confidence 34689999999999888776332 125688999998654444333333210 001112
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
..+-+++..- |..+.|+++|++++||++.. |...+|+.-.+
T Consensus 109 -~~~~~d~~~~--~~~~~d~v~~~~~l~~~~~~------------------------------------~~~~~l~~i~~ 149 (239)
T TIGR00740 109 -EILCNDIRHV--EIKNASMVILNFTLQFLPPE------------------------------------DRIALLTKIYE 149 (239)
T ss_pred -EEEECChhhC--CCCCCCEEeeecchhhCCHH------------------------------------HHHHHHHHHHH
Confidence 1233465432 33358999999999998431 23345677889
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHH-cCCcccccc----cccccccccCCHHHHHHHHHhcC
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQ-EGLITGEKR----DSFNIPVYASSLQEFKEVVEANG 299 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~-eG~i~~e~~----d~f~~P~y~ps~~Ev~~~le~~g 299 (385)
.|+|||++++.-..+..... ..+.+.+.+..+.. .| .+.+++ +.+.-.....|++|+++.+++.|
T Consensus 150 ~LkpgG~l~i~d~~~~~~~~---------~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aG 219 (239)
T TIGR00740 150 GLNPNGVLVLSEKFRFEDTK---------INHLLIDLHHQFKRANG-YSELEISQKRTALENVMRTDSIETHKARLKNVG 219 (239)
T ss_pred hcCCCeEEEEeecccCCCHh---------HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcC
Confidence 99999999988654421110 01234444444443 34 344332 22333445679999999999999
Q ss_pred ceE
Q 016644 300 SFV 302 (385)
Q Consensus 300 sF~ 302 (385)
|+
T Consensus 220 -F~ 221 (239)
T TIGR00740 220 -FS 221 (239)
T ss_pred -Cc
Confidence 76
No 14
>PLN02244 tocopherol O-methyltransferase
Probab=98.95 E-value=3.3e-08 Score=98.43 Aligned_cols=162 Identities=15% Similarity=0.235 Sum_probs=94.7
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|.++..+... + ..+|+--|+..+.....-+..... ....+-.|
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~--------~--------g~~v~gvD~s~~~i~~a~~~~~~~---------g~~~~v~~ 172 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARK--------Y--------GANVKGITLSPVQAARANALAAAQ---------GLSDKVSF 172 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHh--------c--------CCEEEEEECCHHHHHHHHHHHHhc---------CCCCceEE
Confidence 4578999999999998877632 1 246777787544333222211100 00011123
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
.. +++.+--||++++|+|+|..++|++.+... +|+.-.+
T Consensus 173 ~~---~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~--------------------------------------~l~e~~r 211 (340)
T PLN02244 173 QV---ADALNQPFEDGQFDLVWSMESGEHMPDKRK--------------------------------------FVQELAR 211 (340)
T ss_pred EE---cCcccCCCCCCCccEEEECCchhccCCHHH--------------------------------------HHHHHHH
Confidence 33 354444488999999999999998755322 3345678
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~ 304 (385)
-|+|||+|++.........+.... .. ..-...+..+.. .+.+|. +.+.+|+...+++.| |+..
T Consensus 212 vLkpGG~lvi~~~~~~~~~~~~~~---l~--~~~~~~~~~i~~----------~~~~p~-~~s~~~~~~~l~~aG-f~~v 274 (340)
T PLN02244 212 VAAPGGRIIIVTWCHRDLEPGETS---LK--PDEQKLLDKICA----------AYYLPA-WCSTSDYVKLAESLG-LQDI 274 (340)
T ss_pred HcCCCcEEEEEEeccccccccccc---CC--HHHHHHHHHHHh----------hccCCC-CCCHHHHHHHHHHCC-CCee
Confidence 999999999987665432221110 11 111222222211 112332 358999999999999 8876
Q ss_pred EEEEE
Q 016644 305 KLEVF 309 (385)
Q Consensus 305 ~le~~ 309 (385)
+.+.+
T Consensus 275 ~~~d~ 279 (340)
T PLN02244 275 KTEDW 279 (340)
T ss_pred EeeeC
Confidence 65543
No 15
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.88 E-value=1.2e-09 Score=103.24 Aligned_cols=165 Identities=18% Similarity=0.278 Sum_probs=70.2
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY- 143 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~- 143 (385)
+..+|+|+|||||..|+.+...+ .|..+|+.-|+..++....-+.+.. ....++
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~--------------~~~~~v~~vD~s~~ML~~a~~k~~~-----------~~~~~i~ 101 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRV--------------GPNGKVVGVDISPGMLEVARKKLKR-----------EGLQNIE 101 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGS--------------S---EEEEEES-HHHHHHHHHHHHH-----------TT--SEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHC--------------CCccEEEEecCCHHHHHHHHHHHHh-----------hCCCCee
Confidence 45799999999999988876222 2457899999877666655443321 001133
Q ss_pred eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR 222 (385)
Q Consensus 144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R 222 (385)
|+.+ + .+.| ||++|+|.+++++.||-+.+.+..+ +.-
T Consensus 102 ~v~~---d-a~~lp~~d~sfD~v~~~fglrn~~d~~~~l--------------------------------------~E~ 139 (233)
T PF01209_consen 102 FVQG---D-AEDLPFPDNSFDAVTCSFGLRNFPDRERAL--------------------------------------REM 139 (233)
T ss_dssp EEE----B-TTB--S-TT-EEEEEEES-GGG-SSHHHHH--------------------------------------HHH
T ss_pred EEEc---C-HHHhcCCCCceeEEEHHhhHHhhCCHHHHH--------------------------------------HHH
Confidence 4443 5 4556 9999999999999999987755554 346
Q ss_pred HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHH-HHH--cCCcccccccccc----cccccCCHHHHHHHH
Q 016644 223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWND-LVQ--EGLITGEKRDSFN----IPVYASSLQEFKEVV 295 (385)
Q Consensus 223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~-mv~--eG~i~~e~~d~f~----~P~y~ps~~Ev~~~l 295 (385)
.+.|||||++++.=+++... ..+ ..+...+.. .+. -+++..+ .+.+. .-..||+.+|+.+.+
T Consensus 140 ~RVLkPGG~l~ile~~~p~~---------~~~-~~~~~~y~~~ilP~~g~l~~~~-~~~Y~yL~~Si~~f~~~~~~~~~l 208 (233)
T PF01209_consen 140 YRVLKPGGRLVILEFSKPRN---------PLL-RALYKFYFKYILPLIGRLLSGD-REAYRYLPESIRRFPSPEELKELL 208 (233)
T ss_dssp HHHEEEEEEEEEEEEEB-SS---------HHH-HHHHHH-----------------------------------------
T ss_pred HHHcCCCeEEEEeeccCCCC---------chh-hceeeeeecccccccccccccc-cccccccccccccccccccccccc
Confidence 79999999999888887521 100 112222221 111 1222221 12221 223589999999999
Q ss_pred HhcCceEecEEEE
Q 016644 296 EANGSFVINKLEV 308 (385)
Q Consensus 296 e~~gsF~i~~le~ 308 (385)
++.| |+..+.+.
T Consensus 209 ~~~G-f~~v~~~~ 220 (233)
T PF01209_consen 209 EEAG-FKNVEYRP 220 (233)
T ss_dssp -------------
T ss_pred cccc-cccccccc
Confidence 9999 87544443
No 16
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.87 E-value=3e-09 Score=92.79 Aligned_cols=137 Identities=21% Similarity=0.202 Sum_probs=88.5
Q ss_pred CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644 64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY 143 (385)
Q Consensus 64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~ 143 (385)
.+..+|+|+|||+|.++..+. +. + .+++..|.-...... .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~--------~~--------~-~~~~g~D~~~~~~~~-----~------------------ 60 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALA--------KR--------G-FEVTGVDISPQMIEK-----R------------------ 60 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHH--------HT--------T-SEEEEEESSHHHHHH-----T------------------
T ss_pred CCCCEEEEEcCCCCHHHHHHH--------Hh--------C-CEEEEEECCHHHHhh-----h------------------
Confidence 356899999999998766553 11 2 488888874322111 0
Q ss_pred eeccccCccc--cccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSFY--RRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA 221 (385)
Q Consensus 144 f~~~vpgSFy--~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~ 221 (385)
..++..|. ...+|++++|+|+|+.+|||+.+.+ .+|+.
T Consensus 61 --~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~~--------------------------------------~~l~~ 100 (161)
T PF13489_consen 61 --NVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDPE--------------------------------------EFLKE 100 (161)
T ss_dssp --TSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHHH--------------------------------------HHHHH
T ss_pred --hhhhhhhhhhhhhccccchhhHhhHHHHhhcccHH--------------------------------------HHHHH
Confidence 01122332 3347899999999999999997533 33466
Q ss_pred HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644 222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF 301 (385)
Q Consensus 222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF 301 (385)
-.+-|+|||+++++...+.. . ....+..+ ...... +--..+.+.++++.++++.| |
T Consensus 101 l~~~LkpgG~l~~~~~~~~~------------~---~~~~~~~~---~~~~~~-----~~~~~~~~~~~~~~ll~~~G-~ 156 (161)
T PF13489_consen 101 LSRLLKPGGYLVISDPNRDD------------P---SPRSFLKW---RYDRPY-----GGHVHFFSPDELRQLLEQAG-F 156 (161)
T ss_dssp HHHCEEEEEEEEEEEEBTTS------------H---HHHHHHHC---CGTCHH-----TTTTEEBBHHHHHHHHHHTT-E
T ss_pred HHHhcCCCCEEEEEEcCCcc------------h---hhhHHHhc---CCcCcc-----CceeccCCHHHHHHHHHHCC-C
Confidence 78999999999999988741 0 12222221 101000 01235669999999999999 8
Q ss_pred Eec
Q 016644 302 VIN 304 (385)
Q Consensus 302 ~i~ 304 (385)
+|.
T Consensus 157 ~iv 159 (161)
T PF13489_consen 157 EIV 159 (161)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 17
>PRK08317 hypothetical protein; Provisional
Probab=98.85 E-value=3.6e-07 Score=84.64 Aligned_cols=206 Identities=13% Similarity=0.064 Sum_probs=111.9
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
...+|+|+|||+|..+..+.... .|..+++.-|+-.......-+.... .....-|
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~--------------~~~~~v~~~d~~~~~~~~a~~~~~~-----------~~~~~~~ 73 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRV--------------GPEGRVVGIDRSEAMLALAKERAAG-----------LGPNVEF 73 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhc--------------CCCcEEEEEeCCHHHHHHHHHHhhC-----------CCCceEE
Confidence 45789999999999887665322 1446788888854433333222110 0011112
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
.. +++...-++++++|++++..++||+.+.+.. |+...+
T Consensus 74 ~~---~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~--------------------------------------l~~~~~ 112 (241)
T PRK08317 74 VR---GDADGLPFPDGSFDAVRSDRVLQHLEDPARA--------------------------------------LAEIAR 112 (241)
T ss_pred Ee---cccccCCCCCCCceEEEEechhhccCCHHHH--------------------------------------HHHHHH
Confidence 22 2443334688999999999999998763333 355688
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~ 304 (385)
-|+|||++++....-...... ......+...+..+...+ .- ..+..++...+++.| |+..
T Consensus 113 ~L~~gG~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~----------~~---~~~~~~~~~~l~~aG-f~~~ 172 (241)
T PRK08317 113 VLRPGGRVVVLDTDWDTLVWH------SGDRALMRKILNFWSDHF----------AD---PWLGRRLPGLFREAG-LTDI 172 (241)
T ss_pred HhcCCcEEEEEecCCCceeec------CCChHHHHHHHHHHHhcC----------CC---CcHHHHHHHHHHHcC-CCce
Confidence 999999999876432211000 000011222222221111 01 123568999999999 9888
Q ss_pred EEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhhhHHhhhChHHHHHHHHHHHHHhhc
Q 016644 305 KLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIGDQLSEELFKRVERRGSC 364 (385)
Q Consensus 305 ~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep~l~~hfg~~i~delf~r~~~~~~~ 364 (385)
.++.+... ..+.+.......+..+.+.+.+ .....++-++++++.+++....
T Consensus 173 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~ 224 (241)
T PRK08317 173 EVEPYTLI-----ETDLKEADKGFGLIRAARRAVE---AGGISADEADAWLADLAQLARA 224 (241)
T ss_pred eEEEEEEe-----ccCcchhhHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHHhc
Confidence 88877521 1111111122333334444432 1223456667777777765443
No 18
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.81 E-value=4.9e-08 Score=93.06 Aligned_cols=163 Identities=15% Similarity=0.202 Sum_probs=95.6
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY- 143 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~- 143 (385)
++.+|+|+|||+|..++.+.. . ..+|+..|+-...-...-+.+... .-..++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~--------~---------g~~v~~vD~s~~~l~~a~~~~~~~----------g~~~~v~ 96 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAE--------L---------GHQVILCDLSAEMIQRAKQAAEAK----------GVSDNMQ 96 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHH--------c---------CCEEEEEECCHHHHHHHHHHHHhc----------CCccceE
Confidence 457999999999998877752 1 257888898554433332222210 001121
Q ss_pred eeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR 222 (385)
Q Consensus 144 f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R 222 (385)
|+. ++..+-. ++++++|+|++..++||+.+.+..+ ..-
T Consensus 97 ~~~---~d~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l--------------------------------------~~~ 135 (255)
T PRK11036 97 FIH---CAAQDIAQHLETPVDLILFHAVLEWVADPKSVL--------------------------------------QTL 135 (255)
T ss_pred EEE---cCHHHHhhhcCCCCCEEEehhHHHhhCCHHHHH--------------------------------------HHH
Confidence 332 2433211 5678999999999999997643322 445
Q ss_pred HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644 223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV 302 (385)
Q Consensus 223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~ 302 (385)
++-|+|||++++.+..... ..+...+..-|. .+..|+...+.. .-.|.+..+++++.+.+++.| |+
T Consensus 136 ~~~LkpgG~l~i~~~n~~~----------~~~~~~~~~~~~-~~~~~~~~~~~~--~~~p~~~~~~~~l~~~l~~aG-f~ 201 (255)
T PRK11036 136 WSVLRPGGALSLMFYNANG----------LLMHNMVAGNFD-YVQAGMPKRKKR--TLSPDYPLDPEQVYQWLEEAG-WQ 201 (255)
T ss_pred HHHcCCCeEEEEEEECccH----------HHHHHHHccChH-HHHhcCcccccc--CCCCCCCCCHHHHHHHHHHCC-Ce
Confidence 7889999999988765421 000000111111 122332221111 123667789999999999999 98
Q ss_pred ecEEEEE
Q 016644 303 INKLEVF 309 (385)
Q Consensus 303 i~~le~~ 309 (385)
+....-.
T Consensus 202 ~~~~~gi 208 (255)
T PRK11036 202 IMGKTGV 208 (255)
T ss_pred EeeeeeE
Confidence 8765543
No 19
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.78 E-value=7.2e-08 Score=91.68 Aligned_cols=165 Identities=15% Similarity=0.153 Sum_probs=97.6
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|.+++.+...+ ..|..+++.-|+-...-...-+.+... ....++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~-------------~~~~~~v~gvD~S~~ml~~A~~~~~~~----------~~~~~v- 111 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNI-------------HHDNCKIIAIDNSPAMIERCRRHIDAY----------KAPTPV- 111 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhc-------------CCCCCeEEEEeCCHHHHHHHHHHHHhc----------CCCCCe-
Confidence 34789999999999888765322 125678999998554443333333210 001111
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
..+.+++.+ + |....|+++|+.++||++. .. ...+|+.-++
T Consensus 112 -~~~~~d~~~-~-~~~~~D~vv~~~~l~~l~~--~~----------------------------------~~~~l~~i~~ 152 (247)
T PRK15451 112 -DVIEGDIRD-I-AIENASMVVLNFTLQFLEP--SE----------------------------------RQALLDKIYQ 152 (247)
T ss_pred -EEEeCChhh-C-CCCCCCEEehhhHHHhCCH--HH----------------------------------HHHHHHHHHH
Confidence 112345433 2 3345899999999999863 11 1234566788
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccc----ccccccCCHHHHHHHHHhcCc
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSF----NIPVYASSLQEFKEVVEANGS 300 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f----~~P~y~ps~~Ev~~~le~~gs 300 (385)
-|+|||.|++.-.-..... ...+.+...|.++....-.+++++..+ .--...-|+++..+.+++.|
T Consensus 153 ~LkpGG~l~l~e~~~~~~~---------~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aG- 222 (247)
T PRK15451 153 GLNPGGALVLSEKFSFEDA---------KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAG- 222 (247)
T ss_pred hcCCCCEEEEEEecCCCcc---------hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcC-
Confidence 9999999998753222110 011335566766655444666555432 11222348999999999999
Q ss_pred eE
Q 016644 301 FV 302 (385)
Q Consensus 301 F~ 302 (385)
|+
T Consensus 223 F~ 224 (247)
T PRK15451 223 FE 224 (247)
T ss_pred ch
Confidence 65
No 20
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.75 E-value=5.5e-08 Score=96.12 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=94.4
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..+..+.. +..+|+.-|+-........+.... .....+--|.
T Consensus 132 g~~ILDIGCG~G~~s~~La~-----------------~g~~V~GID~s~~~i~~Ar~~~~~---------~~~~~~i~~~ 185 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLAR-----------------MGATVTGVDAVDKNVKIARLHADM---------DPVTSTIEYL 185 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHH-----------------cCCEEEEEeCCHHHHHHHHHHHHh---------cCcccceeEE
Confidence 46899999999998775541 236788888765443333221110 0000011133
Q ss_pred ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
. +++ +.+ ++++++|+|++..+|||+.+.+. ||+..++
T Consensus 186 ~---~da-e~l~~~~~~FD~Vi~~~vLeHv~d~~~--------------------------------------~L~~l~r 223 (322)
T PLN02396 186 C---TTA-EKLADEGRKFDAVLSLEVIEHVANPAE--------------------------------------FCKSLSA 223 (322)
T ss_pred e---cCH-HHhhhccCCCCEEEEhhHHHhcCCHHH--------------------------------------HHHHHHH
Confidence 3 243 344 67789999999999999877433 3456778
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHH--HHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQ--DAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV 302 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~--~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~ 302 (385)
-|+|||+++++...+.. ..|+..+. .-+..++..| ......+.+++|+...+++.| |+
T Consensus 224 ~LkPGG~liist~nr~~----------~~~~~~i~~~eyi~~~lp~g---------th~~~~f~tp~eL~~lL~~aG-f~ 283 (322)
T PLN02396 224 LTIPNGATVLSTINRTM----------RAYASTIVGAEYILRWLPKG---------THQWSSFVTPEELSMILQRAS-VD 283 (322)
T ss_pred HcCCCcEEEEEECCcCH----------HHHHHhhhhHHHHHhcCCCC---------CcCccCCCCHHHHHHHHHHcC-Ce
Confidence 89999999999876531 01110010 0111111111 011224789999999999999 98
Q ss_pred ecEEEEEe
Q 016644 303 INKLEVFK 310 (385)
Q Consensus 303 i~~le~~~ 310 (385)
+..+.-+.
T Consensus 284 i~~~~G~~ 291 (322)
T PLN02396 284 VKEMAGFV 291 (322)
T ss_pred EEEEeeeE
Confidence 87776543
No 21
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.71 E-value=4.4e-08 Score=96.92 Aligned_cols=153 Identities=16% Similarity=0.176 Sum_probs=91.2
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
.-+|+|+|||+|..++.+.. .. + -+|+--|... .+..-++..... .. ...++-
T Consensus 123 g~~VLDIGCG~G~~~~~la~--------~g-------~-~~V~GiD~S~-~~l~q~~a~~~~-------~~--~~~~i~- 175 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLG--------AG-------A-KLVVGIDPSQ-LFLCQFEAVRKL-------LG--NDQRAH- 175 (322)
T ss_pred CCEEEEeccCCcHHHHHHHH--------cC-------C-CEEEEEcCCH-HHHHHHHHHHHh-------cC--CCCCeE-
Confidence 36899999999999987652 11 3 3588888433 332222211100 00 011221
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
-++++ .+.+-.++++|+|+|..++||+.+... +|+.-++.
T Consensus 176 -~~~~d-~e~lp~~~~FD~V~s~~vl~H~~dp~~--------------------------------------~L~~l~~~ 215 (322)
T PRK15068 176 -LLPLG-IEQLPALKAFDTVFSMGVLYHRRSPLD--------------------------------------HLKQLKDQ 215 (322)
T ss_pred -EEeCC-HHHCCCcCCcCEEEECChhhccCCHHH--------------------------------------HHHHHHHh
Confidence 13334 344422789999999999998755322 34557889
Q ss_pred hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecE
Q 016644 226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINK 305 (385)
Q Consensus 226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~ 305 (385)
|+|||+|++..+........ ..+ ..+.+..+...++.||.+++...+++.| |++.+
T Consensus 216 LkpGG~lvl~~~~i~~~~~~------~l~-----------------p~~~y~~~~~~~~lps~~~l~~~L~~aG-F~~i~ 271 (322)
T PRK15068 216 LVPGGELVLETLVIDGDENT------VLV-----------------PGDRYAKMRNVYFIPSVPALKNWLERAG-FKDVR 271 (322)
T ss_pred cCCCcEEEEEEEEecCCCcc------ccC-----------------chhHHhcCccceeCCCHHHHHHHHHHcC-CceEE
Confidence 99999999987655321100 000 0011112233456789999999999999 99777
Q ss_pred EEEE
Q 016644 306 LEVF 309 (385)
Q Consensus 306 le~~ 309 (385)
+...
T Consensus 272 ~~~~ 275 (322)
T PRK15068 272 IVDV 275 (322)
T ss_pred EEeC
Confidence 6644
No 22
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.70 E-value=5.5e-08 Score=90.29 Aligned_cols=152 Identities=20% Similarity=0.283 Sum_probs=101.1
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
.-+.+|+|||-|+.+..+..+=| -+++.-|....+-.+-. +.. .+.+-+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~v----------------ekli~~DtS~~M~~s~~--------------~~q-dp~i~~ 121 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGV----------------EKLIMMDTSYDMIKSCR--------------DAQ-DPSIET 121 (325)
T ss_pred CcceeecccchhhhhHHHHhcch----------------hheeeeecchHHHHHhh--------------ccC-CCceEE
Confidence 45679999999998887763322 34566666432222111 110 111111
Q ss_pred ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
+-.-|+ -++| |-+||+|+++||.++||..++|... ..+..
T Consensus 122 ~~~v~D-EE~Ldf~ens~DLiisSlslHW~NdLPg~m--------------------------------------~~ck~ 162 (325)
T KOG2940|consen 122 SYFVGD-EEFLDFKENSVDLIISSLSLHWTNDLPGSM--------------------------------------IQCKL 162 (325)
T ss_pred EEEecc-hhcccccccchhhhhhhhhhhhhccCchHH--------------------------------------HHHHH
Confidence 100012 3666 9999999999999999999999876 33678
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccccc--CCHHHHHHHHHhcCceE
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYA--SSLQEFKEVVEANGSFV 302 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~--ps~~Ev~~~le~~gsF~ 302 (385)
.|||.|.++.+++|-+ +.|.--..-.|.+|-.+|-|+ |... -...++-.++...| |+
T Consensus 163 ~lKPDg~Fiasmlggd-----------TLyELR~slqLAelER~GGiS---------phiSPf~qvrDiG~LL~rAG-F~ 221 (325)
T KOG2940|consen 163 ALKPDGLFIASMLGGD-----------TLYELRCSLQLAELEREGGIS---------PHISPFTQVRDIGNLLTRAG-FS 221 (325)
T ss_pred hcCCCccchhHHhccc-----------cHHHHHHHhhHHHHHhccCCC---------CCcChhhhhhhhhhHHhhcC-cc
Confidence 9999999999999974 344322455566888899887 4433 36778889999999 87
Q ss_pred ecEEEE
Q 016644 303 INKLEV 308 (385)
Q Consensus 303 i~~le~ 308 (385)
...+.+
T Consensus 222 m~tvDt 227 (325)
T KOG2940|consen 222 MLTVDT 227 (325)
T ss_pred cceecc
Confidence 655544
No 23
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.70 E-value=2e-07 Score=92.75 Aligned_cols=146 Identities=20% Similarity=0.177 Sum_probs=91.7
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
...+|+|+|||+|..++.+.+.. +..+++..|+..+.....-+.... .++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~---------------~~~~VtgVD~S~~mL~~A~~k~~~--------------~~i- 162 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHV---------------DAKNVTILDQSPHQLAKAKQKEPL--------------KEC- 162 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHhhhc--------------cCC-
Confidence 34799999999999887765322 336788899865544433322210 111
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
..+.++..+.-++++++|+++|+.++|++.+... .|+.-.+
T Consensus 163 -~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~d~~~--------------------------------------~L~e~~r 203 (340)
T PLN02490 163 -KIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQR--------------------------------------GIKEAYR 203 (340)
T ss_pred -eEEeccHHhCCCCCCceeEEEEcChhhhCCCHHH--------------------------------------HHHHHHH
Confidence 1134454433378899999999999998765322 2355689
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~ 304 (385)
-|+|||++++...... .++ +..-+.++ -..+++.+|+.+.+++.| |+..
T Consensus 204 vLkPGG~LvIi~~~~p------------~~~--~~r~~~~~----------------~~~~~t~eEl~~lL~~aG-F~~V 252 (340)
T PLN02490 204 VLKIGGKACLIGPVHP------------TFW--LSRFFADV----------------WMLFPKEEEYIEWFTKAG-FKDV 252 (340)
T ss_pred hcCCCcEEEEEEecCc------------chh--HHHHhhhh----------------hccCCCHHHHHHHHHHCC-CeEE
Confidence 9999999987532211 011 11111110 113579999999999999 9877
Q ss_pred EEEEEe
Q 016644 305 KLEVFK 310 (385)
Q Consensus 305 ~le~~~ 310 (385)
+++...
T Consensus 253 ~i~~i~ 258 (340)
T PLN02490 253 KLKRIG 258 (340)
T ss_pred EEEEcC
Confidence 776643
No 24
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.67 E-value=2.1e-08 Score=79.30 Aligned_cols=95 Identities=22% Similarity=0.244 Sum_probs=62.2
Q ss_pred eeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecccc
Q 016644 70 ADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVP 149 (385)
Q Consensus 70 aDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vp 149 (385)
+|+|||+|.++..+.+. +..+++-.|.-...-...-+.... ...-|..
T Consensus 1 LdiG~G~G~~~~~l~~~----------------~~~~v~~~D~~~~~~~~~~~~~~~-------------~~~~~~~--- 48 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR----------------GGASVTGIDISEEMLEQARKRLKN-------------EGVSFRQ--- 48 (95)
T ss_dssp EEET-TTSHHHHHHHHT----------------TTCEEEEEES-HHHHHHHHHHTTT-------------STEEEEE---
T ss_pred CEecCcCCHHHHHHHhc----------------cCCEEEEEeCCHHHHHHHHhcccc-------------cCchhee---
Confidence 79999999999888732 247888888754433333333321 0111333
Q ss_pred CccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 016644 150 GSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRC 229 (385)
Q Consensus 150 gSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG 229 (385)
+++..--||++|+|+++++.++||+.+ ...+|+.-++-||||
T Consensus 49 ~d~~~l~~~~~sfD~v~~~~~~~~~~~--------------------------------------~~~~l~e~~rvLk~g 90 (95)
T PF08241_consen 49 GDAEDLPFPDNSFDVVFSNSVLHHLED--------------------------------------PEAALREIYRVLKPG 90 (95)
T ss_dssp SBTTSSSS-TT-EEEEEEESHGGGSSH--------------------------------------HHHHHHHHHHHEEEE
T ss_pred ehHHhCccccccccccccccceeeccC--------------------------------------HHHHHHHHHHHcCcC
Confidence 365555599999999999999999922 334556689999999
Q ss_pred CeEEE
Q 016644 230 GSMFL 234 (385)
Q Consensus 230 G~lvl 234 (385)
|++++
T Consensus 91 G~l~~ 95 (95)
T PF08241_consen 91 GRLVI 95 (95)
T ss_dssp EEEEE
T ss_pred eEEeC
Confidence 99985
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.66 E-value=1.1e-07 Score=93.79 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=88.7
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|..+..++. .. + -.|+--|.......+ |+..... . .....+.
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~--------~g-------~-~~v~GiDpS~~ml~q-~~~~~~~-------~--~~~~~v~ 174 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLG--------HG-------A-KSLVGIDPTVLFLCQ-FEAVRKL-------L--DNDKRAI 174 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHH--------cC-------C-CEEEEEcCCHHHHHH-HHHHHHH-------h--ccCCCeE
Confidence 346999999999998766641 11 2 256666753322222 2211100 0 0011111
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
..+++ .+.+-+.+++|+|+|+.+|||+.+... +|+.-++
T Consensus 175 --~~~~~-ie~lp~~~~FD~V~s~gvL~H~~dp~~--------------------------------------~L~el~r 213 (314)
T TIGR00452 175 --LEPLG-IEQLHELYAFDTVFSMGVLYHRKSPLE--------------------------------------HLKQLKH 213 (314)
T ss_pred --EEECC-HHHCCCCCCcCEEEEcchhhccCCHHH--------------------------------------HHHHHHH
Confidence 12333 345545579999999999999754322 3456789
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~ 304 (385)
-|+|||.|++..+....... .. +. ..+.+..+...++.||.+++...+++.| |+..
T Consensus 214 ~LkpGG~Lvletl~i~g~~~-------~~----l~------------p~~ry~k~~nv~flpS~~~L~~~L~~aG-F~~V 269 (314)
T TIGR00452 214 QLVIKGELVLETLVIDGDLN-------TV----LV------------PKDRYAKMKNVYFIPSVSALKNWLEKVG-FENF 269 (314)
T ss_pred hcCCCCEEEEEEEEecCccc-------cc----cC------------chHHHHhccccccCCCHHHHHHHHHHCC-CeEE
Confidence 99999999998765431100 00 00 0001112233566789999999999999 9866
Q ss_pred EEEE
Q 016644 305 KLEV 308 (385)
Q Consensus 305 ~le~ 308 (385)
++..
T Consensus 270 ~i~~ 273 (314)
T TIGR00452 270 RILD 273 (314)
T ss_pred EEEe
Confidence 5543
No 26
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.64 E-value=8e-07 Score=82.69 Aligned_cols=169 Identities=16% Similarity=0.191 Sum_probs=97.6
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc-ee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS-YF 144 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~-~f 144 (385)
..+|+|+|||+|..+..+.... ++..+++..|+..+.....-+.+... ....+ -|
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~--------------~~~~~v~~~D~s~~~~~~a~~~~~~~----------~~~~~~~~ 107 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAV--------------GKTGEVVGLDFSEGMLAVGREKLRDL----------GLSGNVEF 107 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHc--------------CCCCeEEEEeCCHHHHHHHHHhhccc----------ccccCeEE
Confidence 4789999999999888775322 12478899998654333332222210 00111 12
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
. -+++.+..++++++|+++++.++|++++.+.. |....+
T Consensus 108 ~---~~d~~~~~~~~~~~D~I~~~~~l~~~~~~~~~--------------------------------------l~~~~~ 146 (239)
T PRK00216 108 V---QGDAEALPFPDNSFDAVTIAFGLRNVPDIDKA--------------------------------------LREMYR 146 (239)
T ss_pred E---ecccccCCCCCCCccEEEEecccccCCCHHHH--------------------------------------HHHHHH
Confidence 2 23555555778899999999999998764433 345678
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHH-HHH-cC-Cccc--ccccc-cccccccCCHHHHHHHHHhc
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWND-LVQ-EG-LITG--EKRDS-FNIPVYASSLQEFKEVVEAN 298 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~-mv~-eG-~i~~--e~~d~-f~~P~y~ps~~Ev~~~le~~ 298 (385)
-|+|||++++.-....... . + ..+.+.+.. +.. -+ .... +..+. .+.-..+++.+++..++++.
T Consensus 147 ~L~~gG~li~~~~~~~~~~--------~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 216 (239)
T PRK00216 147 VLKPGGRLVILEFSKPTNP--------P-L-KKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEA 216 (239)
T ss_pred hccCCcEEEEEEecCCCch--------H-H-HHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 8999999988765443110 0 1 112222211 100 00 0000 00000 00113467999999999999
Q ss_pred CceEecEEEEEe
Q 016644 299 GSFVINKLEVFK 310 (385)
Q Consensus 299 gsF~i~~le~~~ 310 (385)
| |++.+...+.
T Consensus 217 G-f~~~~~~~~~ 227 (239)
T PRK00216 217 G-FERVRYRNLT 227 (239)
T ss_pred C-Cceeeeeeee
Confidence 9 9988877765
No 27
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.60 E-value=4.4e-06 Score=84.61 Aligned_cols=187 Identities=13% Similarity=0.201 Sum_probs=111.8
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..++.+.+ .+ ..+|+--|+-.......-+.... . .+
T Consensus 168 g~rVLDIGcG~G~~a~~la~--------~~--------g~~V~giDlS~~~l~~A~~~~~~-------------l-~v-- 215 (383)
T PRK11705 168 GMRVLDIGCGWGGLARYAAE--------HY--------GVSVVGVTISAEQQKLAQERCAG-------------L-PV-- 215 (383)
T ss_pred CCEEEEeCCCccHHHHHHHH--------HC--------CCEEEEEeCCHHHHHHHHHHhcc-------------C-eE--
Confidence 46899999999998876652 21 25778888865444333222211 0 11
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
....++ |..+ ++++|.|+|...++|+.. +++..+++.-.+-
T Consensus 216 ~~~~~D-~~~l--~~~fD~Ivs~~~~ehvg~------------------------------------~~~~~~l~~i~r~ 256 (383)
T PRK11705 216 EIRLQD-YRDL--NGQFDRIVSVGMFEHVGP------------------------------------KNYRTYFEVVRRC 256 (383)
T ss_pred EEEECc-hhhc--CCCCCEEEEeCchhhCCh------------------------------------HHHHHHHHHHHHH
Confidence 112234 3333 579999999999988632 1244566778899
Q ss_pred hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccc-ccCCHHHHHHHHHhcCceEec
Q 016644 226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPV-YASSLQEFKEVVEANGSFVIN 304 (385)
Q Consensus 226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~~Ev~~~le~~gsF~i~ 304 (385)
|+|||++++...+.+..... .. ..++.+.+|- +.|+++++....+ .| |++.
T Consensus 257 LkpGG~lvl~~i~~~~~~~~-------------~~-------------~~i~~yifp~g~lps~~~i~~~~~-~~-~~v~ 308 (383)
T PRK11705 257 LKPDGLFLLHTIGSNKTDTN-------------VD-------------PWINKYIFPNGCLPSVRQIAQASE-GL-FVME 308 (383)
T ss_pred cCCCcEEEEEEccCCCCCCC-------------CC-------------CCceeeecCCCcCCCHHHHHHHHH-CC-cEEE
Confidence 99999999998876532100 00 1122344563 6899999998877 45 9888
Q ss_pred EEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhh--hHHhhhChHHHHHHHHHHHHHhhch
Q 016644 305 KLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGV--LVDAHIGDQLSEELFKRVERRGSCY 365 (385)
Q Consensus 305 ~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep--~l~~hfg~~i~delf~r~~~~~~~~ 365 (385)
.++.+. + .+++.+..|.+.|-.. -+.+.+|++... ++.-|-...+..
T Consensus 309 d~~~~~---------~----hy~~TL~~W~~~f~~~~~~~~~~~~~~~~r-~w~~yl~~~~~~ 357 (383)
T PRK11705 309 DWHNFG---------A----DYDRTLMAWHENFEAAWPELADNYSERFYR-MWRYYLLSCAGA 357 (383)
T ss_pred EEecCh---------h----hHHHHHHHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHH
Confidence 777653 1 1556666665555442 133456655332 355555555544
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.60 E-value=2e-07 Score=86.68 Aligned_cols=144 Identities=13% Similarity=0.172 Sum_probs=88.8
Q ss_pred EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecc
Q 016644 68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAG 147 (385)
Q Consensus 68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~ 147 (385)
+|+|+|||+|..+..+.+ .+ |..+++-.|+..+.....-+.+... .-..++ ..
T Consensus 2 ~vLDiGcG~G~~~~~la~--------~~-------~~~~v~gid~s~~~~~~a~~~~~~~----------gl~~~i--~~ 54 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAE--------RH-------PHLQLHGYTISPEQAEVGRERIRAL----------GLQGRI--RI 54 (224)
T ss_pred eEEEECCCCCHHHHHHHH--------HC-------CCCEEEEEECCHHHHHHHHHHHHhc----------CCCcce--EE
Confidence 689999999998776652 22 3467777887544333332222210 000111 11
Q ss_pred ccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016644 148 VPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMK 227 (385)
Q Consensus 148 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~ 227 (385)
+.+++....+ ++++|+|+|..++|++.+.+ .+|+.-++-|+
T Consensus 55 ~~~d~~~~~~-~~~fD~I~~~~~l~~~~~~~--------------------------------------~~l~~~~~~Lk 95 (224)
T smart00828 55 FYRDSAKDPF-PDTYDLVFGFEVIHHIKDKM--------------------------------------DLFSNISRHLK 95 (224)
T ss_pred EecccccCCC-CCCCCEeehHHHHHhCCCHH--------------------------------------HHHHHHHHHcC
Confidence 2234333333 45899999999999985522 34466789999
Q ss_pred cCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEE
Q 016644 228 RCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLE 307 (385)
Q Consensus 228 pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le 307 (385)
|||++++.-....... . +. .-..+.|+++.+++...+++.| |++.+.+
T Consensus 96 pgG~l~i~~~~~~~~~------------~--------------~~-----~~~~~~~~~s~~~~~~~l~~~G-f~~~~~~ 143 (224)
T smart00828 96 DGGHLVLADFIANLLS------------A--------------IE-----HEETTSYLVTREEWAELLARNN-LRVVEGV 143 (224)
T ss_pred CCCEEEEEEcccccCc------------c--------------cc-----ccccccccCCHHHHHHHHHHCC-CeEEEeE
Confidence 9999998765332100 0 00 0113456899999999999999 9987776
Q ss_pred EE
Q 016644 308 VF 309 (385)
Q Consensus 308 ~~ 309 (385)
.+
T Consensus 144 ~~ 145 (224)
T smart00828 144 DA 145 (224)
T ss_pred EC
Confidence 55
No 29
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.59 E-value=1e-06 Score=81.11 Aligned_cols=166 Identities=14% Similarity=0.222 Sum_probs=96.8
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCc-eeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPE-FSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY 143 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~-~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~ 143 (385)
+..+|+|+|||+|..+..+.... |. .+++.-|+...-....-+.+. . ..+.-
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~---------------~~~~~~~~iD~~~~~~~~~~~~~~-~-----------~~~i~ 91 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSA---------------PDRGKVTGVDFSSEMLEVAKKKSE-L-----------PLNIE 91 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhc---------------CCCceEEEEECCHHHHHHHHHHhc-c-----------CCCce
Confidence 45799999999999888775322 22 578888874322222222221 0 00111
Q ss_pred eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
|. .+++.+-.++++++|+++++..+|+..+.. .+|+...
T Consensus 92 ~~---~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~--------------------------------------~~l~~~~ 130 (223)
T TIGR01934 92 FI---QADAEALPFEDNSFDAVTIAFGLRNVTDIQ--------------------------------------KALREMY 130 (223)
T ss_pred EE---ecchhcCCCCCCcEEEEEEeeeeCCcccHH--------------------------------------HHHHHHH
Confidence 22 245555557888999999999999875522 3346678
Q ss_pred hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHH-HHH--cCCcccccccccc----cccccCCHHHHHHHHH
Q 016644 224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWND-LVQ--EGLITGEKRDSFN----IPVYASSLQEFKEVVE 296 (385)
Q Consensus 224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~-mv~--eG~i~~e~~d~f~----~P~y~ps~~Ev~~~le 296 (385)
+.|+|||++++.-.-.... .. + ..+.+.+.. +.. .+..... .+.+. ....+++.+|++..++
T Consensus 131 ~~L~~gG~l~~~~~~~~~~--------~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (223)
T TIGR01934 131 RVLKPGGRLVILEFSKPAN--------AL-L-KKFYKFYLKNVLPSIGGLISKN-AEAYTYLPESIRAFPSQEELAAMLK 199 (223)
T ss_pred HHcCCCcEEEEEEecCCCc--------hh-h-HHHHHHHHHHhhhhhhhhhcCC-chhhHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999998765433211 01 1 223333332 211 1111111 11111 1123679999999999
Q ss_pred hcCceEecEEEEEe
Q 016644 297 ANGSFVINKLEVFK 310 (385)
Q Consensus 297 ~~gsF~i~~le~~~ 310 (385)
+.| |++...+.+.
T Consensus 200 ~aG-f~~~~~~~~~ 212 (223)
T TIGR01934 200 EAG-FEEVRYRSLT 212 (223)
T ss_pred HcC-Cccceeeeee
Confidence 999 9987777654
No 30
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.57 E-value=1.1e-06 Score=84.69 Aligned_cols=76 Identities=24% Similarity=0.305 Sum_probs=45.4
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
...+|+|+|||+|..+..+...+ . .....+++-.|+..+.....-+..+. .-|
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~--------~----~~~~~~v~giD~s~~~l~~A~~~~~~---------------~~~ 137 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADAL--------P----EITTMQLFGLDISKVAIKYAAKRYPQ---------------VTF 137 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhc--------c----cccCCeEEEECCCHHHHHHHHHhCCC---------------CeE
Confidence 34689999999999888876432 0 00124788899865444333222221 112
Q ss_pred eccccCccccccCCCCcccEEEcccc
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFS 170 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~a 170 (385)
..+ +..+--|+++++|+|+|..+
T Consensus 138 ~~~---d~~~lp~~~~sfD~I~~~~~ 160 (272)
T PRK11088 138 CVA---SSHRLPFADQSLDAIIRIYA 160 (272)
T ss_pred EEe---ecccCCCcCCceeEEEEecC
Confidence 222 43322378999999998654
No 31
>PRK06202 hypothetical protein; Provisional
Probab=98.53 E-value=1.3e-06 Score=81.91 Aligned_cols=165 Identities=15% Similarity=0.164 Sum_probs=91.6
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|.++..+.... ++. .|..+++..|+-.+.....-+.... .+--+
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~----~~~-------g~~~~v~gvD~s~~~l~~a~~~~~~-------------~~~~~ 115 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWA----RRD-------GLRLEVTAIDPDPRAVAFARANPRR-------------PGVTF 115 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHH----HhC-------CCCcEEEEEcCCHHHHHHHHhcccc-------------CCCeE
Confidence 46799999999999888765322 111 1457899999866444333222211 00011
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
..+....+ -++++++|+|+|+.+|||+.+. . +..+|+.-++
T Consensus 116 ~~~~~~~l---~~~~~~fD~V~~~~~lhh~~d~-~-----------------------------------~~~~l~~~~r 156 (232)
T PRK06202 116 RQAVSDEL---VAEGERFDVVTSNHFLHHLDDA-E-----------------------------------VVRLLADSAA 156 (232)
T ss_pred EEEecccc---cccCCCccEEEECCeeecCChH-H-----------------------------------HHHHHHHHHH
Confidence 11111111 1378899999999999998652 1 1223343444
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~ 304 (385)
-++ |.+++.-+.+.. ..+ . +..........|.+.. -|....-.-+++.+|+.+.+++ | |++.
T Consensus 157 ~~~--~~~~i~dl~~~~----------~~~-~-~~~~~~~~~~~~~~~~--~d~~~s~~~~~~~~el~~ll~~-G-f~~~ 218 (232)
T PRK06202 157 LAR--RLVLHNDLIRSR----------LAY-A-LFWAGTRLLSRSSFVH--TDGLLSVRRSYTPAELAALAPQ-G-WRVE 218 (232)
T ss_pred hcC--eeEEEeccccCH----------HHH-H-HHHHHHHHhccCceee--ccchHHHHhhcCHHHHHHHhhC-C-CeEE
Confidence 444 556566666531 111 0 1111111112232211 1333344568999999999998 7 9988
Q ss_pred EEEEEe
Q 016644 305 KLEVFK 310 (385)
Q Consensus 305 ~le~~~ 310 (385)
+...|.
T Consensus 219 ~~~~~~ 224 (232)
T PRK06202 219 RQWPFR 224 (232)
T ss_pred ecccee
Confidence 877764
No 32
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.53 E-value=6e-07 Score=82.50 Aligned_cols=103 Identities=20% Similarity=0.291 Sum_probs=62.7
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|.+++.+.+ + ..+|+.-|+..+.-..+-+.... ....++
T Consensus 31 ~~~vLDiGcG~G~~a~~La~--------~---------g~~V~gvD~S~~~i~~a~~~~~~-----------~~~~~v-- 80 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAA--------N---------GFDVTAWDKNPMSIANLERIKAA-----------ENLDNL-- 80 (197)
T ss_pred CCcEEEECCCCCHHHHHHHH--------C---------CCEEEEEeCCHHHHHHHHHHHHH-----------cCCCcc--
Confidence 47899999999999988752 1 25778888854322222111110 001111
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
..+..++. .+-+++++|+|+|+.++||++. . |...+++.-++-
T Consensus 81 ~~~~~d~~-~~~~~~~fD~I~~~~~~~~~~~--~----------------------------------~~~~~l~~i~~~ 123 (197)
T PRK11207 81 HTAVVDLN-NLTFDGEYDFILSTVVLMFLEA--K----------------------------------TIPGLIANMQRC 123 (197)
T ss_pred eEEecChh-hCCcCCCcCEEEEecchhhCCH--H----------------------------------HHHHHHHHHHHH
Confidence 11223432 2323568999999999999742 1 234566777889
Q ss_pred hccCCeEEEE
Q 016644 226 MKRCGSMFLV 235 (385)
Q Consensus 226 L~pGG~lvl~ 235 (385)
|+|||++++.
T Consensus 124 LkpgG~~~~~ 133 (197)
T PRK11207 124 TKPGGYNLIV 133 (197)
T ss_pred cCCCcEEEEE
Confidence 9999996554
No 33
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.50 E-value=3.8e-08 Score=79.71 Aligned_cols=99 Identities=17% Similarity=0.189 Sum_probs=50.0
Q ss_pred eeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecccc
Q 016644 70 ADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVP 149 (385)
Q Consensus 70 aDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vp 149 (385)
+|+|||+|.++..+.... |..+++..|.-.......-+.+.. ......-.+....
T Consensus 1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~~~l~~a~~~~~~----------~~~~~~~~~~~~~ 55 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISPSMLERARERLAE----------LGNDNFERLRFDV 55 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------------EEEEEEEESSSSTTSTTCCCHHH----------CT---EEEEE--S
T ss_pred CEeCccChHHHHHHHHhC---------------CCCEEEEEECCHHHHHHHHHHhhh----------cCCcceeEEEeec
Confidence 699999999999887433 568999999876554222111111 0000111111211
Q ss_pred CccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 016644 150 GSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRC 229 (385)
Q Consensus 150 gSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pG 229 (385)
.+... ..+.+++|+|+++.+|||+.+ +..+|+.-++-|+||
T Consensus 56 ~~~~~-~~~~~~fD~V~~~~vl~~l~~--------------------------------------~~~~l~~~~~~L~pg 96 (99)
T PF08242_consen 56 LDLFD-YDPPESFDLVVASNVLHHLED--------------------------------------IEAVLRNIYRLLKPG 96 (99)
T ss_dssp SS----CCC----SEEEEE-TTS--S---------------------------------------HHHHHHHHTTT-TSS
T ss_pred CChhh-cccccccceehhhhhHhhhhh--------------------------------------HHHHHHHHHHHcCCC
Confidence 22111 123379999999999999922 334557788999999
Q ss_pred CeE
Q 016644 230 GSM 232 (385)
Q Consensus 230 G~l 232 (385)
|+|
T Consensus 97 G~l 99 (99)
T PF08242_consen 97 GIL 99 (99)
T ss_dssp -EE
T ss_pred CCC
Confidence 986
No 34
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.50 E-value=1.5e-06 Score=79.35 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=24.7
Q ss_pred ccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644 282 PVYASSLQEFKEVVEANGSFVINKLEVFK 310 (385)
Q Consensus 282 P~y~ps~~Ev~~~le~~gsF~i~~le~~~ 310 (385)
+..+.+.+|+.+.+++.| |++.....+.
T Consensus 142 ~~~~~s~~~~~~ll~~~G-f~v~~~~~~~ 169 (194)
T TIGR02081 142 NIHFCTIADFEDLCGELN-LRILDRAAFD 169 (194)
T ss_pred CcccCcHHHHHHHHHHCC-CEEEEEEEec
Confidence 356889999999999999 9999988875
No 35
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.41 E-value=6.7e-07 Score=82.55 Aligned_cols=158 Identities=12% Similarity=0.102 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644 36 AQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN 115 (385)
Q Consensus 36 ~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N 115 (385)
+|+.+.....|.+-........ .+.. ...+|+|+|||+|..+..+.... |..+|+..|.-..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~VLDiGcGtG~~~~~la~~~---------------p~~~v~gVD~s~~ 75 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAE-LFGN--DAPIHLEIGFGKGEFLVEMAKAN---------------PDINFIGIEVHEP 75 (202)
T ss_pred chhhhhcccchhhcCCCCCHHH-HcCC--CCCeEEEEccCCCHHHHHHHHHC---------------CCccEEEEEechH
Confidence 4666666777777443322211 1222 45789999999999998875322 5568899998654
Q ss_pred chHHHHhcCCCCCCchhHhhhcCcCCce-eeccccCcc---ccccCCCCcccEEEcccccccccCCchhhhcccccccCC
Q 016644 116 DFNTLFQLLPPIGSSMEECLASDTHRSY-FAAGVPGSF---YRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNK 191 (385)
Q Consensus 116 DFn~lF~~l~~~~~~~~~~~~~~~~~~~-f~~~vpgSF---y~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nk 191 (385)
....+-+.+.. ....++ |+. ++. +.+.++++++|.++++...+|...... .
T Consensus 76 ~i~~a~~~~~~-----------~~~~~v~~~~---~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~-~---------- 130 (202)
T PRK00121 76 GVGKALKKIEE-----------EGLTNLRLLC---GDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHH-K---------- 130 (202)
T ss_pred HHHHHHHHHHH-----------cCCCCEEEEe---cCHHHHHHHHcCccccceEEEECCCCCCCcccc-c----------
Confidence 44444333211 011122 222 343 234578999999999988888653211 0
Q ss_pred CceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCc
Q 016644 192 GKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLI 271 (385)
Q Consensus 192 g~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i 271 (385)
. +.+...||+.-++-|+|||++++..... ..+...+..|...|+-
T Consensus 131 ~-------------------~~~~~~~l~~i~~~LkpgG~l~i~~~~~----------------~~~~~~~~~~~~~g~~ 175 (202)
T PRK00121 131 R-------------------RLVQPEFLALYARKLKPGGEIHFATDWE----------------GYAEYMLEVLSAEGGF 175 (202)
T ss_pred c-------------------ccCCHHHHHHHHHHcCCCCEEEEEcCCH----------------HHHHHHHHHHHhCccc
Confidence 0 0023456777889999999999876433 3356666667677753
No 36
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.38 E-value=3.3e-06 Score=81.08 Aligned_cols=153 Identities=13% Similarity=0.088 Sum_probs=89.7
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
..-+|+|+|||+|..++.+...+ .+..+|+.-|+-.+.....-+..... ...++
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~--------------g~~~~v~gvD~s~~~l~~A~~~~~~~-----------g~~~v- 130 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRV--------------GPTGKVIGVDMTPEMLAKARANARKA-----------GYTNV- 130 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEECCCHHHHHHHHHHHHHc-----------CCCCE-
Confidence 34699999999998776554221 13457888888544433332222110 01111
Q ss_pred eccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 145 ~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
..+.+++ +.+ +|++++|+++|+.++||..+.+..+ +.-.
T Consensus 131 -~~~~~d~-~~l~~~~~~fD~Vi~~~v~~~~~d~~~~l--------------------------------------~~~~ 170 (272)
T PRK11873 131 -EFRLGEI-EALPVADNSVDVIISNCVINLSPDKERVF--------------------------------------KEAF 170 (272)
T ss_pred -EEEEcch-hhCCCCCCceeEEEEcCcccCCCCHHHHH--------------------------------------HHHH
Confidence 1122353 333 6788999999999999975544333 3457
Q ss_pred hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEe
Q 016644 224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVI 303 (385)
Q Consensus 224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i 303 (385)
+-|+|||+|++.-+..... .. ..+...+. +. .|. .....+.+|+...+++.| |..
T Consensus 171 r~LkpGG~l~i~~~~~~~~---------~~--~~~~~~~~-~~-~~~-----------~~~~~~~~e~~~~l~~aG-f~~ 225 (272)
T PRK11873 171 RVLKPGGRFAISDVVLRGE---------LP--EEIRNDAE-LY-AGC-----------VAGALQEEEYLAMLAEAG-FVD 225 (272)
T ss_pred HHcCCCcEEEEEEeeccCC---------CC--HHHHHhHH-HH-hcc-----------ccCCCCHHHHHHHHHHCC-CCc
Confidence 8899999999875443211 00 11222222 11 111 123457899999999999 877
Q ss_pred cEEEE
Q 016644 304 NKLEV 308 (385)
Q Consensus 304 ~~le~ 308 (385)
.++..
T Consensus 226 v~i~~ 230 (272)
T PRK11873 226 ITIQP 230 (272)
T ss_pred eEEEe
Confidence 66554
No 37
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.32 E-value=1.3e-05 Score=75.17 Aligned_cols=199 Identities=15% Similarity=0.202 Sum_probs=109.2
Q ss_pred EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecc
Q 016644 68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAG 147 (385)
Q Consensus 68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~ 147 (385)
.+.|+|||+|-.++.+. +.+ -+|+-.|+-.-+.+-+-+.-+. . .+-
T Consensus 36 ~a~DvG~G~Gqa~~~ia--------e~~---------k~VIatD~s~~mL~~a~k~~~~----------------~-y~~ 81 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIA--------EHY---------KEVIATDVSEAMLKVAKKHPPV----------------T-YCH 81 (261)
T ss_pred eEEEeccCCCcchHHHH--------Hhh---------hhheeecCCHHHHHHhhcCCCc----------------c-ccc
Confidence 78999999995555544 222 4678888866554422221111 1 112
Q ss_pred ccCccc----ccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644 148 VPGSFY----RRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR 222 (385)
Q Consensus 148 vpgSFy----~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R 222 (385)
+|-++- ..| =+++|||+|.+.-|+||. |+.+|.+.-
T Consensus 82 t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF---------------------------------------dle~fy~~~ 122 (261)
T KOG3010|consen 82 TPSTMSSDEMVDLLGGEESVDLITAAQAVHWF---------------------------------------DLERFYKEA 122 (261)
T ss_pred CCccccccccccccCCCcceeeehhhhhHHhh---------------------------------------chHHHHHHH
Confidence 333333 223 359999999999999996 466777888
Q ss_pred HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcC---
Q 016644 223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANG--- 299 (385)
Q Consensus 223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~g--- 299 (385)
.+.|++.|-+++...=+++.... .+ .-..+..+... ..|.+ .....+.+...-
T Consensus 123 ~rvLRk~Gg~iavW~Y~dd~v~~---------pE-~dsv~~r~~~~-----------~~p~~---r~~~~n~~fdgy~~~ 178 (261)
T KOG3010|consen 123 YRVLRKDGGLIAVWNYNDDFVDW---------PE-FDSVMLRLYDS-----------TLPYW---RSPLRNLLFDGYKTI 178 (261)
T ss_pred HHHcCCCCCEEEEEEccCCCcCC---------HH-HHHHHHHHhhc-----------cCchh---hhHHHHhhccccccc
Confidence 99999999776666544322211 12 22222222221 13443 222222222211
Q ss_pred ceEecEEEEEeCCCCCcccCCCchhhhHHHHHHHHHHhhhhhHHhhhC-hHHHHHHHHHHHHHhhch
Q 016644 300 SFVINKLEVFKGGSPLVVKQPDDAAEVGQALANSCRSVAGVLVDAHIG-DQLSEELFKRVERRGSCY 365 (385)
Q Consensus 300 sF~i~~le~~~~~~~~~~~~~~d~~~~~~~~a~~iRa~~ep~l~~hfg-~~i~delf~r~~~~~~~~ 365 (385)
-|..+++..+....|.....+. .-.-.++..++|+|..-.=.+|=| +.|.+.+..++++.-...
T Consensus 179 ~F~~e~v~~~s~~~~~~l~~~~--~lsl~~F~~~~rsws~~~~akek~~e~i~~~~I~e~~~~~~~~ 243 (261)
T KOG3010|consen 179 EFPFESVGMGSQGKPKTLEIPH--TLSLEGFSGFLRSWSAYKEAKEKGLELIADIFIPEFEEAWGED 243 (261)
T ss_pred cccccccCCCCCCCceeehhhH--HHHHHHHHHHHhCcHHHHHHHhcChHHHHHHHHHHHHhhcccc
Confidence 1333333332211111111111 123456888999999877777766 456677888888766654
No 38
>PRK06922 hypothetical protein; Provisional
Probab=98.31 E-value=1.1e-06 Score=93.28 Aligned_cols=115 Identities=17% Similarity=0.112 Sum_probs=75.1
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..+..+.. .+ |..+++.-|+..+.-..+-+.+... ..+..++
T Consensus 419 g~rVLDIGCGTG~ls~~LA~--------~~-------P~~kVtGIDIS~~MLe~Ararl~~~-----------g~~ie~I 472 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEE--------ET-------EDKRIYGIDISENVIDTLKKKKQNE-----------GRSWNVI 472 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHH--------hC-------CCCEEEEEECCHHHHHHHHHHhhhc-----------CCCeEEE
Confidence 47999999999987766542 22 5689999999876555543333210 0111122
Q ss_pred ccccCccc--cccCCCCcccEEEcccccccc-cCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644 146 AGVPGSFY--RRLFPTRSIDFFHSAFSLHWL-SQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR 222 (385)
Q Consensus 146 ~~vpgSFy--~rLfP~~Svd~~~Ss~alHWL-S~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R 222 (385)
.+ +.. ...|+++++|++++++++||+ +.+|..-. .+ -.+|...+|+.-
T Consensus 473 ~g---Da~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~-----~f---------------------~~edl~kiLreI 523 (677)
T PRK06922 473 KG---DAINLSSSFEKESVDTIVYSSILHELFSYIEYEGK-----KF---------------------NHEVIKKGLQSA 523 (677)
T ss_pred Ec---chHhCccccCCCCEEEEEEchHHHhhhhhcccccc-----cc---------------------cHHHHHHHHHHH
Confidence 22 322 223789999999999999975 44442110 00 024678888889
Q ss_pred HhhhccCCeEEEE
Q 016644 223 SKEMKRCGSMFLV 235 (385)
Q Consensus 223 a~EL~pGG~lvl~ 235 (385)
.+.|+|||++++.
T Consensus 524 ~RVLKPGGrLII~ 536 (677)
T PRK06922 524 YEVLKPGGRIIIR 536 (677)
T ss_pred HHHcCCCcEEEEE
Confidence 9999999999986
No 39
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.30 E-value=4.1e-06 Score=79.19 Aligned_cols=172 Identities=18% Similarity=0.262 Sum_probs=103.2
Q ss_pred CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcC-CCCCCchhHhhhcCcCCc
Q 016644 64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL-PPIGSSMEECLASDTHRS 142 (385)
Q Consensus 64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l-~~~~~~~~~~~~~~~~~~ 142 (385)
++.++++|.+||||-.|++++..+-++ . + .-+-+|+..|.-.++.+---+.- .. . ++. +.+-
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~----~----~-~~~~~V~v~Dinp~mL~vgkqRa~~~------~-l~~-~~~~ 161 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQ----F----G-DRESKVTVLDINPHMLAVGKQRAKKR------P-LKA-SSRV 161 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccc----c----C-CCCceEEEEeCCHHHHHHHHHHHhhc------C-CCc-CCce
Confidence 456999999999999999998655221 1 1 23467888888665544322211 00 0 000 0112
Q ss_pred eeeccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644 143 YFAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA 221 (385)
Q Consensus 143 ~f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~ 221 (385)
.|+. |+ -+.| ||++++|...+++.+--+.+.+..+.+
T Consensus 162 ~w~~---~d-AE~LpFdd~s~D~yTiafGIRN~th~~k~l~E-------------------------------------- 199 (296)
T KOG1540|consen 162 EWVE---GD-AEDLPFDDDSFDAYTIAFGIRNVTHIQKALRE-------------------------------------- 199 (296)
T ss_pred EEEe---CC-cccCCCCCCcceeEEEecceecCCCHHHHHHH--------------------------------------
Confidence 3433 35 6788 999999999999999988887777632
Q ss_pred HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHH-H-HHHcCCccccccccccc----ccccCCHHHHHHHH
Q 016644 222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWN-D-LVQEGLITGEKRDSFNI----PVYASSLQEFKEVV 295 (385)
Q Consensus 222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~-~-mv~eG~i~~e~~d~f~~----P~y~ps~~Ev~~~l 295 (385)
-++.|||||++.+.-+..-+..+- +.+.++|. + +.--|-+=....+++.. ---||+.+|+...+
T Consensus 200 AYRVLKpGGrf~cLeFskv~~~~l----------~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~mi 269 (296)
T KOG1540|consen 200 AYRVLKPGGRFSCLEFSKVENEPL----------KWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMI 269 (296)
T ss_pred HHHhcCCCcEEEEEEccccccHHH----------HHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHH
Confidence 468999999999888777431100 11122111 0 00011110111111111 12489999999999
Q ss_pred HhcCceEecE
Q 016644 296 EANGSFVINK 305 (385)
Q Consensus 296 e~~gsF~i~~ 305 (385)
++.| |....
T Consensus 270 edaG-F~~~~ 278 (296)
T KOG1540|consen 270 EDAG-FSSVN 278 (296)
T ss_pred HHcC-Ccccc
Confidence 9999 87654
No 40
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.29 E-value=1.5e-06 Score=79.65 Aligned_cols=103 Identities=16% Similarity=0.258 Sum_probs=63.0
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
+.+|+|+|||+|.+++.+.. + ..+|+.-|+..+.-..+-+.... ... ++
T Consensus 31 ~~~vLDiGcG~G~~a~~la~--------~---------g~~V~~iD~s~~~l~~a~~~~~~-----------~~~-~v-- 79 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSL--------A---------GYDVRAWDHNPASIASVLDMKAR-----------ENL-PL-- 79 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHH--------C---------CCeEEEEECCHHHHHHHHHHHHH-----------hCC-Cc--
Confidence 57999999999999998862 1 25788888865433333221110 000 11
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
...-.+. ...-+++++|+++|+.++||++.. ++..+++..++-
T Consensus 80 ~~~~~d~-~~~~~~~~fD~I~~~~~~~~~~~~------------------------------------~~~~~l~~~~~~ 122 (195)
T TIGR00477 80 RTDAYDI-NAAALNEDYDFIFSTVVFMFLQAG------------------------------------RVPEIIANMQAH 122 (195)
T ss_pred eeEeccc-hhccccCCCCEEEEecccccCCHH------------------------------------HHHHHHHHHHHH
Confidence 0111121 122234689999999999998431 234456677889
Q ss_pred hccCCeEEEEe
Q 016644 226 MKRCGSMFLVC 236 (385)
Q Consensus 226 L~pGG~lvl~~ 236 (385)
|+|||++++..
T Consensus 123 LkpgG~lli~~ 133 (195)
T TIGR00477 123 TRPGGYNLIVA 133 (195)
T ss_pred hCCCcEEEEEE
Confidence 99999965544
No 41
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.25 E-value=3.3e-05 Score=75.61 Aligned_cols=154 Identities=13% Similarity=0.193 Sum_probs=89.4
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|..++.+.+ ++ |..+++.-|+|. .....-+.+... .-..+
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~--------~~-------p~~~~~~~D~~~-~~~~a~~~~~~~----------gl~~r-- 200 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLK--------HF-------PELDSTILNLPG-AIDLVNENAAEK----------GVADR-- 200 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHH--------HC-------CCCEEEEEecHH-HHHHHHHHHHhC----------Cccce--
Confidence 457999999999988877763 33 678888889863 222222222110 00112
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
+..++++|++.-+|. .|+++.+..+|-..+ . +-..+|+.-++
T Consensus 201 v~~~~~d~~~~~~~~--~D~v~~~~~lh~~~~--~----------------------------------~~~~il~~~~~ 242 (306)
T TIGR02716 201 MRGIAVDIYKESYPE--ADAVLFCRILYSANE--Q----------------------------------LSTIMCKKAFD 242 (306)
T ss_pred EEEEecCccCCCCCC--CCEEEeEhhhhcCCh--H----------------------------------HHHHHHHHHHH
Confidence 234677988755665 499998888884322 1 11234566789
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~ 304 (385)
.|+|||++++.=.-..+.. . ..+ ..+... +..-|+.. .+..+++.+|+.+++++.| |+..
T Consensus 243 ~L~pgG~l~i~d~~~~~~~-~------~~~-~~~~~~---~~~~~~~~--------~~~~~~~~~e~~~ll~~aG-f~~v 302 (306)
T TIGR02716 243 AMRSGGRLLILDMVIDDPE-N------PNF-DYLSHY---ILGAGMPF--------SVLGFKEQARYKEILESLG-YKDV 302 (306)
T ss_pred hcCCCCEEEEEEeccCCCC-C------chh-hHHHHH---HHHccccc--------ccccCCCHHHHHHHHHHcC-CCee
Confidence 9999999988744332111 0 111 112222 11122110 1224566899999999999 8643
No 42
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.25 E-value=1.4e-05 Score=74.18 Aligned_cols=158 Identities=13% Similarity=0.121 Sum_probs=86.1
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|..+..+.+. ...++..|+........-+.+... ...+.-|
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-----------------~~~v~~iD~s~~~~~~a~~~~~~~----------~~~~~~~ 97 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-----------------GANVTGIDASEENIEVAKLHAKKD----------PLLKIEY 97 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-----------------CCeEEEEeCCHHHHHHHHHHHHHc----------CCCceEE
Confidence 4689999999999877765421 124778887543333222222110 0000112
Q ss_pred eccccCccccccCC-CCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRRLFP-TRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 145 ~~~vpgSFy~rLfP-~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
.. +++-+-..+ ++++|+++++.++|+..+.. .+|+...
T Consensus 98 ~~---~d~~~~~~~~~~~~D~i~~~~~l~~~~~~~--------------------------------------~~l~~~~ 136 (224)
T TIGR01983 98 RC---TSVEDLAEKGAKSFDVVTCMEVLEHVPDPQ--------------------------------------AFIRACA 136 (224)
T ss_pred Ee---CCHHHhhcCCCCCccEEEehhHHHhCCCHH--------------------------------------HHHHHHH
Confidence 21 232222222 47999999999999875422 2345567
Q ss_pred hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHH-HHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644 224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWN-DLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV 302 (385)
Q Consensus 224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~-~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~ 302 (385)
+-|+|||.+++....+.. ..+ ....+. ++.. +..... ......+.+.+++.+.+++.| |+
T Consensus 137 ~~L~~gG~l~i~~~~~~~----------~~~---~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~l~~~l~~~G-~~ 197 (224)
T TIGR01983 137 QLLKPGGILFFSTINRTP----------KSY---LLAIVGAEYIL-RIVPKG----THDWEKFIKPSELTSWLESAG-LR 197 (224)
T ss_pred HhcCCCcEEEEEecCCCc----------hHH---HHHHHhhhhhh-hcCCCC----cCChhhcCCHHHHHHHHHHcC-Ce
Confidence 789999999887654320 001 111111 1111 111110 011123568999999999998 99
Q ss_pred ecEEEEE
Q 016644 303 INKLEVF 309 (385)
Q Consensus 303 i~~le~~ 309 (385)
|..+..+
T Consensus 198 i~~~~~~ 204 (224)
T TIGR01983 198 VKDVKGL 204 (224)
T ss_pred eeeeeeE
Confidence 8877644
No 43
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=98.23 E-value=4.3e-06 Score=68.69 Aligned_cols=107 Identities=15% Similarity=0.181 Sum_probs=67.7
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-ee
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-FA 145 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f~ 145 (385)
-+|+|+|||+|..++.+.+ .. |..+|+--|.-.......-+.... .....++ |.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~--------~~-------~~~~v~gvD~s~~~~~~a~~~~~~----------~~~~~~i~~~ 57 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALAR--------LF-------PGARVVGVDISPEMLEIARERAAE----------EGLSDRITFV 57 (112)
T ss_dssp CEEEEETTTTSHHHHHHHH--------HH-------TTSEEEEEESSHHHHHHHHHHHHH----------TTTTTTEEEE
T ss_pred CEEEEEcCcCCHHHHHHHh--------cC-------CCCEEEEEeCCHHHHHHHHHHHHh----------cCCCCCeEEE
Confidence 5899999999999998874 22 567888888855444444333310 0011222 33
Q ss_pred ccccCccccccCCCCcccEEEccc-ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAF-SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~-alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
. +++-...-....+|+++++. ++|++-.. .+...+|+...+
T Consensus 58 ~---~d~~~~~~~~~~~D~v~~~~~~~~~~~~~-----------------------------------~~~~~~l~~~~~ 99 (112)
T PF12847_consen 58 Q---GDAEFDPDFLEPFDLVICSGFTLHFLLPL-----------------------------------DERRRVLERIRR 99 (112)
T ss_dssp E---SCCHGGTTTSSCEEEEEECSGSGGGCCHH-----------------------------------HHHHHHHHHHHH
T ss_pred E---CccccCcccCCCCCEEEECCCccccccch-----------------------------------hHHHHHHHHHHH
Confidence 3 35511122334599999999 77754322 235566788899
Q ss_pred hhccCCeEEEEe
Q 016644 225 EMKRCGSMFLVC 236 (385)
Q Consensus 225 EL~pGG~lvl~~ 236 (385)
-|+|||+|++..
T Consensus 100 ~L~pgG~lvi~~ 111 (112)
T PF12847_consen 100 LLKPGGRLVINT 111 (112)
T ss_dssp HEEEEEEEEEEE
T ss_pred hcCCCcEEEEEE
Confidence 999999999863
No 44
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.22 E-value=3.1e-05 Score=74.98 Aligned_cols=155 Identities=19% Similarity=0.281 Sum_probs=81.6
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
-.+|+|+|||-|..++.+.+ ++ ..+|.--.|..+....+-+.+... +-...+-+
T Consensus 63 G~~vLDiGcGwG~~~~~~a~--------~~--------g~~v~gitlS~~Q~~~a~~~~~~~----------gl~~~v~v 116 (273)
T PF02353_consen 63 GDRVLDIGCGWGGLAIYAAE--------RY--------GCHVTGITLSEEQAEYARERIREA----------GLEDRVEV 116 (273)
T ss_dssp T-EEEEES-TTSHHHHHHHH--------HH----------EEEEEES-HHHHHHHHHHHHCS----------TSSSTEEE
T ss_pred CCEEEEeCCCccHHHHHHHH--------Hc--------CcEEEEEECCHHHHHHHHHHHHhc----------CCCCceEE
Confidence 47999999999999998873 33 245665566544433332221110 00111211
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
.=.+ |..+ +. ++|-|+|--++.-+.. +++..|++..++-
T Consensus 117 --~~~D-~~~~-~~-~fD~IvSi~~~Ehvg~------------------------------------~~~~~~f~~~~~~ 155 (273)
T PF02353_consen 117 --RLQD-YRDL-PG-KFDRIVSIEMFEHVGR------------------------------------KNYPAFFRKISRL 155 (273)
T ss_dssp --EES--GGG-----S-SEEEEESEGGGTCG------------------------------------GGHHHHHHHHHHH
T ss_pred --EEee-cccc-CC-CCCEEEEEechhhcCh------------------------------------hHHHHHHHHHHHh
Confidence 1125 3343 22 9999999877655411 2366788889999
Q ss_pred hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccc-ccCCHHHHHHHHHhcCceEec
Q 016644 226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPV-YASSLQEFKEVVEANGSFVIN 304 (385)
Q Consensus 226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~-y~ps~~Ev~~~le~~gsF~i~ 304 (385)
|+|||+|++...+.............. +++. .+.+|- +.|+.+|+...+++.| |+|.
T Consensus 156 LkpgG~~~lq~i~~~~~~~~~~~~~~~-----------~~i~----------kyiFPgg~lps~~~~~~~~~~~~-l~v~ 213 (273)
T PF02353_consen 156 LKPGGRLVLQTITHRDPPYHAERRSSS-----------DFIR----------KYIFPGGYLPSLSEILRAAEDAG-LEVE 213 (273)
T ss_dssp SETTEEEEEEEEEE--HHHHHCTTCCC-----------HHHH----------HHTSTTS---BHHHHHHHHHHTT--EEE
T ss_pred cCCCcEEEEEecccccccchhhcCCCc-----------eEEE----------EeeCCCCCCCCHHHHHHHHhcCC-EEEE
Confidence 999999999887764210000000000 1111 222343 5689999999999888 9988
Q ss_pred EEEEE
Q 016644 305 KLEVF 309 (385)
Q Consensus 305 ~le~~ 309 (385)
..+.+
T Consensus 214 ~~~~~ 218 (273)
T PF02353_consen 214 DVENL 218 (273)
T ss_dssp EEEE-
T ss_pred EEEEc
Confidence 77764
No 45
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.19 E-value=8.9e-06 Score=76.12 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=86.7
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|..+..+.+ . ..+++..|+..+.....-+.+... ....-|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~--------~---------~~~v~~iD~s~~~~~~a~~~~~~~-----------~~~~~~ 99 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMAR--------L---------GADVTGIDASEENIEVARLHALES-----------GLKIDY 99 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHH--------c---------CCeEEEEcCCHHHHHHHHHHHHHc-----------CCceEE
Confidence 357899999999987665531 1 135777787544333222211100 000111
Q ss_pred eccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 145 ~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
.. +++-.-. .+++++|+++++..++++.+.. .+|+...
T Consensus 100 ~~---~~~~~~~~~~~~~fD~Ii~~~~l~~~~~~~--------------------------------------~~l~~~~ 138 (233)
T PRK05134 100 RQ---TTAEELAAEHPGQFDVVTCMEMLEHVPDPA--------------------------------------SFVRACA 138 (233)
T ss_pred Ee---cCHHHhhhhcCCCccEEEEhhHhhccCCHH--------------------------------------HHHHHHH
Confidence 11 1221111 3568999999999988875422 2345567
Q ss_pred hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHH-HHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644 224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAW-NDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV 302 (385)
Q Consensus 224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al-~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~ 302 (385)
+-|+|||+|+++..++.. ..+ ....+ ...+..+. .. .......+.+++|+.+++++.| |+
T Consensus 139 ~~L~~gG~l~v~~~~~~~----------~~~---~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~l~~~G-f~ 199 (233)
T PRK05134 139 KLVKPGGLVFFSTLNRNL----------KSY---LLAIVGAEYVLRML-PK----GTHDYKKFIKPSELAAWLRQAG-LE 199 (233)
T ss_pred HHcCCCcEEEEEecCCCh----------HHH---HHHHhhHHHHhhhc-Cc----ccCchhhcCCHHHHHHHHHHCC-Ce
Confidence 889999999988765421 000 11111 11222211 10 0112235678999999999999 99
Q ss_pred ecEEEE
Q 016644 303 INKLEV 308 (385)
Q Consensus 303 i~~le~ 308 (385)
+.....
T Consensus 200 ~v~~~~ 205 (233)
T PRK05134 200 VQDITG 205 (233)
T ss_pred Eeeeee
Confidence 876653
No 46
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.17 E-value=3.8e-05 Score=71.39 Aligned_cols=29 Identities=10% Similarity=0.292 Sum_probs=24.9
Q ss_pred cccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644 281 IPVYASSLQEFKEVVEANGSFVINKLEVFK 310 (385)
Q Consensus 281 ~P~y~ps~~Ev~~~le~~gsF~i~~le~~~ 310 (385)
.+.++++++|+..++++.| |++...+.+.
T Consensus 180 ~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 180 TSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred cceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 4678899999999999999 9998887553
No 47
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.17 E-value=4.7e-06 Score=75.77 Aligned_cols=131 Identities=15% Similarity=0.096 Sum_probs=77.8
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..++.+.. .. |..+|+.-|.-.+.-..+-+.+.. ....++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~--------~~-------~~~~V~~iD~s~~~~~~a~~~~~~-----------~~~~~i-- 94 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAI--------AR-------PELKLTLLESNHKKVAFLREVKAE-----------LGLNNV-- 94 (181)
T ss_pred CCeEEEecCCCCccHHHHHH--------HC-------CCCeEEEEeCcHHHHHHHHHHHHH-----------hCCCCe--
Confidence 47899999999999888741 11 446788889865543322222110 001122
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
..+.++. +.+.+.+++|+|+|.. +|++ +. ++..-.+-
T Consensus 95 ~~i~~d~-~~~~~~~~fD~I~s~~-~~~~---~~--------------------------------------~~~~~~~~ 131 (181)
T TIGR00138 95 EIVNGRA-EDFQHEEQFDVITSRA-LASL---NV--------------------------------------LLELTLNL 131 (181)
T ss_pred EEEecch-hhccccCCccEEEehh-hhCH---HH--------------------------------------HHHHHHHh
Confidence 1233353 3355678999999865 4332 11 22333567
Q ss_pred hccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccc
Q 016644 226 MKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIP 282 (385)
Q Consensus 226 L~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P 282 (385)
|+|||++++.. |.. . ...+....+.+...| +...+.++++.|
T Consensus 132 LkpgG~lvi~~-~~~-----------~--~~~~~~~~e~~~~~~-~~~~~~~~~~~~ 173 (181)
T TIGR00138 132 LKVGGYFLAYK-GKK-----------Y--LDEIEEAKRKCQVLG-VEPLEVPPLTGP 173 (181)
T ss_pred cCCCCEEEEEc-CCC-----------c--HHHHHHHHHhhhhcC-ceEeeccccCCC
Confidence 99999998774 321 0 022555556677778 566777888888
No 48
>PRK05785 hypothetical protein; Provisional
Probab=98.16 E-value=1e-05 Score=76.12 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=52.3
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||||.++..+... + ..+|+.-|+-.++-...-+. .. ++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~--------~--------~~~v~gvD~S~~Ml~~a~~~-----------------~~-~~ 97 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKV--------F--------KYYVVALDYAENMLKMNLVA-----------------DD-KV 97 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHh--------c--------CCEEEEECCCHHHHHHHHhc-----------------cc-eE
Confidence 468999999999988776421 1 24788888765443322110 01 12
Q ss_pred ccccCcccccc-CCCCcccEEEcccccccccCCchhh
Q 016644 146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESA 181 (385)
Q Consensus 146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l 181 (385)
-+++ +.+ ||++|+|+++|+++|||+.+.+..+
T Consensus 98 ---~~d~-~~lp~~d~sfD~v~~~~~l~~~~d~~~~l 130 (226)
T PRK05785 98 ---VGSF-EALPFRDKSFDVVMSSFALHASDNIEKVI 130 (226)
T ss_pred ---Eech-hhCCCCCCCEEEEEecChhhccCCHHHHH
Confidence 2343 345 8899999999999999988765554
No 49
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.15 E-value=9.1e-06 Score=79.64 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=75.5
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
...+|+|+|||+|..|..+++... ...+++--|+....-....+.+..- .+.+=
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~--------------~~~~~~~iDiS~~mL~~a~~~l~~~------------~p~~~ 116 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALR--------------QPARYVPIDISADALKESAAALAAD------------YPQLE 116 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhc--------------cCCeEEEEECCHHHHHHHHHHHHhh------------CCCce
Confidence 347899999999999998885441 1378899999765544444444310 11122
Q ss_pred eccccCcccccc-CCCC----cccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRRL-FPTR----SIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL 219 (385)
Q Consensus 145 ~~~vpgSFy~rL-fP~~----Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL 219 (385)
+.++-|+|.+-+ +|.. ...++++.+++++++ |. |...||
T Consensus 117 v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~--~~----------------------------------e~~~~L 160 (301)
T TIGR03438 117 VHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFT--PE----------------------------------EAVAFL 160 (301)
T ss_pred EEEEEEcccchhhhhcccccCCeEEEEecccccCCC--HH----------------------------------HHHHHH
Confidence 234556876543 3333 456788888999985 22 345678
Q ss_pred HHHHhhhccCCeEEEEeccCC
Q 016644 220 GARSKEMKRCGSMFLVCLGRT 240 (385)
Q Consensus 220 ~~Ra~EL~pGG~lvl~~~g~~ 240 (385)
+.-++.|+|||+|++.+-...
T Consensus 161 ~~i~~~L~pgG~~lig~d~~~ 181 (301)
T TIGR03438 161 RRIRQLLGPGGGLLIGVDLVK 181 (301)
T ss_pred HHHHHhcCCCCEEEEeccCCC
Confidence 888899999999998775554
No 50
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.14 E-value=4.7e-06 Score=72.95 Aligned_cols=105 Identities=16% Similarity=0.172 Sum_probs=69.3
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh---cCCCCCCchhHhhhcCcCC
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ---LLPPIGSSMEECLASDTHR 141 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~---~l~~~~~~~~~~~~~~~~~ 141 (385)
+..+|+|+|||+|..++.+.... + |..+++.-|+-....+..-+ .+.- .+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~-------~-------~~~~i~gvD~s~~~i~~a~~~~~~~~~-------------~n 55 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL-------N-------PGAKIIGVDISEEMIEYAKKRAKELGL-------------DN 55 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS-------T-------TTSEEEEEESSHHHHHHHHHHHHHTTS-------------TT
T ss_pred CCCEEEEecCcCcHHHHHHHHhc-------C-------CCCEEEEEECcHHHHHHhhcccccccc-------------cc
Confidence 46899999999999998876311 1 45789999986544333322 2221 11
Q ss_pred ceeeccccCcccc--ccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644 142 SYFAAGVPGSFYR--RLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL 219 (385)
Q Consensus 142 ~~f~~~vpgSFy~--rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL 219 (385)
--|..+ ++.+ +.++ +.+|+++++.++||+.+.... |
T Consensus 56 i~~~~~---d~~~l~~~~~-~~~D~I~~~~~l~~~~~~~~~--------------------------------------l 93 (152)
T PF13847_consen 56 IEFIQG---DIEDLPQELE-EKFDIIISNGVLHHFPDPEKV--------------------------------------L 93 (152)
T ss_dssp EEEEES---BTTCGCGCSS-TTEEEEEEESTGGGTSHHHHH--------------------------------------H
T ss_pred cceEEe---ehhccccccC-CCeeEEEEcCchhhccCHHHH--------------------------------------H
Confidence 123333 5433 1133 899999999999998664333 3
Q ss_pred HHHHhhhccCCeEEEEecc
Q 016644 220 GARSKEMKRCGSMFLVCLG 238 (385)
Q Consensus 220 ~~Ra~EL~pGG~lvl~~~g 238 (385)
+.-.+-|++||.+++....
T Consensus 94 ~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 94 KNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp HHHHHHEEEEEEEEEEEEE
T ss_pred HHHHHHcCCCcEEEEEECC
Confidence 5568899999999988866
No 51
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.14 E-value=1.1e-05 Score=74.73 Aligned_cols=106 Identities=17% Similarity=0.259 Sum_probs=65.1
Q ss_pred CCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCce
Q 016644 26 GEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEF 105 (385)
Q Consensus 26 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~ 105 (385)
|..-..+|. .+. .+.....++.+.+..+ ++..+|+|+|||+|.++..+.... |..
T Consensus 14 g~~~~~rn~-~~~-~~~~~~~~~~~~l~~~--------~~~~~VLDiGCG~G~~~~~L~~~~---------------~~~ 68 (204)
T TIGR03587 14 GKEYIDRNS-RQS-LVAAKLAMFARALNRL--------PKIASILELGANIGMNLAALKRLL---------------PFK 68 (204)
T ss_pred cchhhhccc-cHH-HHHHHHHHHHHHHHhc--------CCCCcEEEEecCCCHHHHHHHHhC---------------CCC
Confidence 444444444 222 2344555666655444 245689999999999888775221 446
Q ss_pred eEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEccccccccc
Q 016644 106 SAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLS 175 (385)
Q Consensus 106 qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS 175 (385)
+++.-|+-.+.....-+.++. .. + +.++..+ -++++++|+|+|+.+||+++
T Consensus 69 ~v~giDiS~~~l~~A~~~~~~--------------~~-~---~~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 69 HIYGVEINEYAVEKAKAYLPN--------------IN-I---IQGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred eEEEEECCHHHHHHHHhhCCC--------------Cc-E---EEeeccC-CCCCCCEEEEEECChhhhCC
Confidence 788888865444443332321 11 1 2345555 67899999999999998874
No 52
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.13 E-value=5.4e-06 Score=80.58 Aligned_cols=103 Identities=21% Similarity=0.328 Sum_probs=64.0
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
+-+|+|+|||+|.|++.+.. ...+|+.-|.....-..+-+.... ... ++
T Consensus 121 ~~~vLDlGcG~G~~~~~la~-----------------~g~~V~avD~s~~ai~~~~~~~~~-----------~~l-~v-- 169 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLAL-----------------LGFDVTAVDINQQSLENLQEIAEK-----------ENL-NI-- 169 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHH-----------------CCCEEEEEECCHHHHHHHHHHHHH-----------cCC-ce--
Confidence 34899999999999988752 125788888754333322221110 000 11
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
..+.++.- ..-+++++|+|+|+.++|+++. . ++..+|+.-.+-
T Consensus 170 ~~~~~D~~-~~~~~~~fD~I~~~~vl~~l~~--~----------------------------------~~~~~l~~~~~~ 212 (287)
T PRK12335 170 RTGLYDIN-SASIQEEYDFILSTVVLMFLNR--E----------------------------------RIPAIIKNMQEH 212 (287)
T ss_pred EEEEechh-cccccCCccEEEEcchhhhCCH--H----------------------------------HHHHHHHHHHHh
Confidence 11122322 2223789999999999999842 1 245566778899
Q ss_pred hccCCeEEEEe
Q 016644 226 MKRCGSMFLVC 236 (385)
Q Consensus 226 L~pGG~lvl~~ 236 (385)
|+|||++++..
T Consensus 213 LkpgG~~l~v~ 223 (287)
T PRK12335 213 TNPGGYNLIVC 223 (287)
T ss_pred cCCCcEEEEEE
Confidence 99999977654
No 53
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.13 E-value=3.1e-05 Score=71.93 Aligned_cols=109 Identities=16% Similarity=0.202 Sum_probs=68.5
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..|..+.+.. .+.-+|+.-|+-. .+ .++ +-.+
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~--------------~~~~~V~aVDi~~--~~----~~~---------------~v~~- 95 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQI--------------GDKGRVIACDILP--MD----PIV---------------GVDF- 95 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHc--------------CCCceEEEEeccc--cc----CCC---------------CcEE-
Confidence 4689999999999887776322 1335788888732 11 111 1112
Q ss_pred ccccCccccc--------cCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHH
Q 016644 146 AGVPGSFYRR--------LFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAA 217 (385)
Q Consensus 146 ~~vpgSFy~r--------LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~ 217 (385)
+-+++... -++++++|+|+|+.+.||... |. .| . ..+ ......
T Consensus 96 --i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~-~~--~d-------------------~----~~~-~~~~~~ 146 (209)
T PRK11188 96 --LQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGT-PA--VD-------------------I----PRA-MYLVEL 146 (209)
T ss_pred --EecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCC-hH--HH-------------------H----HHH-HHHHHH
Confidence 23355542 267899999999999999542 21 11 0 000 111356
Q ss_pred HHHHHHhhhccCCeEEEEeccC
Q 016644 218 FLGARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 218 FL~~Ra~EL~pGG~lvl~~~g~ 239 (385)
.|+.-.+-|+|||+|++..+..
T Consensus 147 ~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 147 ALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHHHHcCCCCEEEEEEecC
Confidence 7888899999999999966554
No 54
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.13 E-value=9.9e-06 Score=74.33 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=61.9
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
++-+++|+|||+|+||+-+.+ -.+.|..-|....-...+.+.... .+. ++
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~-----------------~G~~VtAvD~s~~al~~l~~~a~~-----------~~l-~i- 79 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLAS-----------------QGFDVTAVDISPVALEKLQRLAEE-----------EGL-DI- 79 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHH-----------------TT-EEEEEESSHHHHHHHHHHHHH-----------TT--TE-
T ss_pred CCCcEEEcCCCCcHHHHHHHH-----------------CCCeEEEEECCHHHHHHHHHHHhh-----------cCc-ee-
Confidence 457999999999999999872 237788888754333333221110 000 11
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
...-.++ +..-+++.+|+|+|..++|.|.. +. +..++....+
T Consensus 80 -~~~~~Dl-~~~~~~~~yD~I~st~v~~fL~~--~~----------------------------------~~~i~~~m~~ 121 (192)
T PF03848_consen 80 -RTRVADL-NDFDFPEEYDFIVSTVVFMFLQR--EL----------------------------------RPQIIENMKA 121 (192)
T ss_dssp -EEEE-BG-CCBS-TTTEEEEEEESSGGGS-G--GG----------------------------------HHHHHHHHHH
T ss_pred -EEEEecc-hhccccCCcCEEEEEEEeccCCH--HH----------------------------------HHHHHHHHHh
Confidence 1111132 22223578999999999999853 21 1233455688
Q ss_pred hhccCCeEEEEecc
Q 016644 225 EMKRCGSMFLVCLG 238 (385)
Q Consensus 225 EL~pGG~lvl~~~g 238 (385)
.++|||.+++..+-
T Consensus 122 ~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 122 ATKPGGYNLIVTFM 135 (192)
T ss_dssp TEEEEEEEEEEEEB
T ss_pred hcCCcEEEEEEEec
Confidence 99999998886543
No 55
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.06 E-value=2.2e-05 Score=81.42 Aligned_cols=101 Identities=17% Similarity=0.172 Sum_probs=64.2
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc-ee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS-YF 144 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~-~f 144 (385)
..+|+|+|||+|.+|..+... + .+|+..|+-........+ +.. ...+ -|
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~--------~---------~~v~giD~s~~~l~~a~~-~~~------------~~~~i~~ 87 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK--------A---------GQVIALDFIESVIKKNES-ING------------HYKNVKF 87 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh--------C---------CEEEEEeCCHHHHHHHHH-Hhc------------cCCceEE
Confidence 358999999999999887621 1 356777764332221111 110 0112 23
Q ss_pred eccccCcccc-cc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYR-RL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR 222 (385)
Q Consensus 145 ~~~vpgSFy~-rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R 222 (385)
+.+ ++.. .+ +|++++|+|+|+.++||+++. ++..+|+..
T Consensus 88 ~~~---d~~~~~~~~~~~~fD~I~~~~~l~~l~~~------------------------------------~~~~~l~~~ 128 (475)
T PLN02336 88 MCA---DVTSPDLNISDGSVDLIFSNWLLMYLSDK------------------------------------EVENLAERM 128 (475)
T ss_pred EEe---cccccccCCCCCCEEEEehhhhHHhCCHH------------------------------------HHHHHHHHH
Confidence 332 4332 22 788999999999999998541 234566778
Q ss_pred HhhhccCCeEEEE
Q 016644 223 SKEMKRCGSMFLV 235 (385)
Q Consensus 223 a~EL~pGG~lvl~ 235 (385)
++-|+|||+|++.
T Consensus 129 ~r~Lk~gG~l~~~ 141 (475)
T PLN02336 129 VKWLKVGGYIFFR 141 (475)
T ss_pred HHhcCCCeEEEEE
Confidence 8999999999774
No 56
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.04 E-value=2e-05 Score=73.14 Aligned_cols=138 Identities=21% Similarity=0.239 Sum_probs=89.3
Q ss_pred chhHHhHHH---HHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCc
Q 016644 28 ASYANNSQA---QAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPE 104 (385)
Q Consensus 28 ~sY~~nS~~---Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~ 104 (385)
.-|++||.+ |.....+++.+|. ++.+ ++--|+|+|||||--+-.+- .+.
T Consensus 21 ~kYt~nsri~~IQ~em~eRaLELLa----------lp~~-~~~~iLDIGCGsGLSg~vL~-----------------~~G 72 (270)
T KOG1541|consen 21 PKYTQNSRIVLIQAEMAERALELLA----------LPGP-KSGLILDIGCGSGLSGSVLS-----------------DSG 72 (270)
T ss_pred hhccccceeeeehHHHHHHHHHHhh----------CCCC-CCcEEEEeccCCCcchheec-----------------cCC
Confidence 358888876 5555555555554 2333 67889999999997443321 145
Q ss_pred eeEEecCCCCCchHHHHh-cCCCCCCchhHhhhcCcCCceeeccccCcccccc-CCCCcccEEEcccccccccCCchhhh
Q 016644 105 FSAFFSDLPSNDFNTLFQ-LLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESAL 182 (385)
Q Consensus 105 ~qv~~nDLp~NDFn~lF~-~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~ 182 (385)
.+++--|...-+....-. .+. ..+ +. ++.=+-| |+++++|-++|-+|+|||=...+...
T Consensus 73 h~wiGvDiSpsML~~a~~~e~e---------------gdl-il---~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~ 133 (270)
T KOG1541|consen 73 HQWIGVDISPSMLEQAVERELE---------------GDL-IL---CDMGEGLPFRPGTFDGVISISAVQWLCNADKSLH 133 (270)
T ss_pred ceEEeecCCHHHHHHHHHhhhh---------------cCe-ee---eecCCCCCCCCCccceEEEeeeeeeecccCcccc
Confidence 788888876545444321 111 111 11 1222445 89999999999999999866544331
Q ss_pred cccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccC
Q 016644 183 DKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 183 ~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 239 (385)
. =++-+..|+..-...|++|++-|+.+.=.
T Consensus 134 ~---------------------------P~~Rl~~FF~tLy~~l~rg~raV~QfYpe 163 (270)
T KOG1541|consen 134 V---------------------------PKKRLLRFFGTLYSCLKRGARAVLQFYPE 163 (270)
T ss_pred C---------------------------hHHHHHHHhhhhhhhhccCceeEEEeccc
Confidence 1 13347788888899999999999999544
No 57
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.02 E-value=2.1e-05 Score=72.07 Aligned_cols=115 Identities=12% Similarity=0.162 Sum_probs=71.0
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
.-+|+|+|||+|..++.+... + |..+++.-|+-.......-+.+.. ....++-
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~--------~-------p~~~v~gvD~~~~~l~~a~~~~~~-----------~~l~ni~- 69 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQ--------N-------PDKNFLGIEIHTPIVLAANNKANK-----------LGLKNLH- 69 (194)
T ss_pred CceEEEeCCCccHHHHHHHHh--------C-------CCCCEEEEEeeHHHHHHHHHHHHH-----------hCCCCEE-
Confidence 358999999999998877632 2 677888888854333333222221 0111331
Q ss_pred ccccCccc---cccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644 146 AGVPGSFY---RRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR 222 (385)
Q Consensus 146 ~~vpgSFy---~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R 222 (385)
.+-++.. ..++|++++|.+++++..+|..+.. .. .++ ....||+.-
T Consensus 70 -~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h-~~----------~r~-------------------~~~~~l~~~ 118 (194)
T TIGR00091 70 -VLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRH-NK----------RRI-------------------TQPHFLKEY 118 (194)
T ss_pred -EEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCc-cc----------ccc-------------------CCHHHHHHH
Confidence 1223433 4457888999999999999954311 00 000 013566777
Q ss_pred HhhhccCCeEEEEecc
Q 016644 223 SKEMKRCGSMFLVCLG 238 (385)
Q Consensus 223 a~EL~pGG~lvl~~~g 238 (385)
++-|+|||.+++..-.
T Consensus 119 ~r~LkpgG~l~~~td~ 134 (194)
T TIGR00091 119 ANVLKKGGVIHFKTDN 134 (194)
T ss_pred HHHhCCCCEEEEEeCC
Confidence 8999999999887733
No 58
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.01 E-value=0.00025 Score=65.93 Aligned_cols=29 Identities=17% Similarity=0.371 Sum_probs=24.2
Q ss_pred cccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644 281 IPVYASSLQEFKEVVEANGSFVINKLEVFK 310 (385)
Q Consensus 281 ~P~y~ps~~Ev~~~le~~gsF~i~~le~~~ 310 (385)
.+.++.+.+|+...++..| |++...+.+.
T Consensus 188 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 216 (230)
T PRK07580 188 TRIYPHREKGIRRALAAAG-FKVVRTERIS 216 (230)
T ss_pred CCccccCHHHHHHHHHHCC-CceEeeeecc
Confidence 4567789999999999999 9988777654
No 59
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.00 E-value=7.6e-05 Score=71.85 Aligned_cols=123 Identities=15% Similarity=0.260 Sum_probs=67.0
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCC---CchhHhhhcCcCC
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIG---SSMEECLASDTHR 141 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~---~~~~~~~~~~~~~ 141 (385)
++++|+|+|||||.-+-.+.-.+ .+.... ...+.++|+-.|+-...-...-+...+.. .-+..+. .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l----~e~~~~--~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~-----~ 167 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLL----AETLPK--AREPDVKILATDIDLKALEKARAGIYPERELEDLPKALL-----A 167 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHH----HHHhhh--cCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHH-----h
Confidence 46999999999997533222111 122211 01235899999996544444333332100 0000000 0
Q ss_pred ceeecc----------------ccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHH
Q 016644 142 SYFAAG----------------VPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTAN 205 (385)
Q Consensus 142 ~~f~~~----------------vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ 205 (385)
.||... .-++..+.-+|.+++|+|+|.++|||+++ |.
T Consensus 168 ~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~-~~-------------------------- 220 (264)
T smart00138 168 RYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDE-PT-------------------------- 220 (264)
T ss_pred hhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCH-HH--------------------------
Confidence 122110 11122222246899999999999999854 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCeEEE
Q 016644 206 AYKKQFQTDLAAFLGARSKEMKRCGSMFL 234 (385)
Q Consensus 206 ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 234 (385)
....|+.-++-|+|||+|++
T Consensus 221 ---------~~~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 221 ---------QRKLLNRFAEALKPGGYLFL 240 (264)
T ss_pred ---------HHHHHHHHHHHhCCCeEEEE
Confidence 22344567899999999975
No 60
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.00 E-value=1.1e-05 Score=80.59 Aligned_cols=106 Identities=13% Similarity=0.194 Sum_probs=68.0
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA 146 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~ 146 (385)
-+|+|+|||+|..++.+.. ++ |..+|+..|....-....-+++.. .....-
T Consensus 198 g~VLDlGCG~G~ls~~la~--------~~-------p~~~v~~vDis~~Al~~A~~nl~~-----------n~l~~~--- 248 (342)
T PRK09489 198 GKVLDVGCGAGVLSAVLAR--------HS-------PKIRLTLSDVSAAALESSRATLAA-----------NGLEGE--- 248 (342)
T ss_pred CeEEEeccCcCHHHHHHHH--------hC-------CCCEEEEEECCHHHHHHHHHHHHH-----------cCCCCE---
Confidence 4799999999998877652 22 667899999854333332222221 000111
Q ss_pred cccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644 147 GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM 226 (385)
Q Consensus 147 ~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL 226 (385)
.+.++.+.. .++++|+|+|+-.+||.-..- ..+...|++.-++-|
T Consensus 249 ~~~~D~~~~--~~~~fDlIvsNPPFH~g~~~~---------------------------------~~~~~~~i~~a~~~L 293 (342)
T PRK09489 249 VFASNVFSD--IKGRFDMIISNPPFHDGIQTS---------------------------------LDAAQTLIRGAVRHL 293 (342)
T ss_pred EEEcccccc--cCCCccEEEECCCccCCcccc---------------------------------HHHHHHHHHHHHHhc
Confidence 123344443 367899999999999742211 123566788889999
Q ss_pred ccCCeEEEEe
Q 016644 227 KRCGSMFLVC 236 (385)
Q Consensus 227 ~pGG~lvl~~ 236 (385)
+|||.|+++.
T Consensus 294 kpgG~L~iVa 303 (342)
T PRK09489 294 NSGGELRIVA 303 (342)
T ss_pred CcCCEEEEEE
Confidence 9999998865
No 61
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=97.99 E-value=0.00018 Score=69.66 Aligned_cols=152 Identities=18% Similarity=0.293 Sum_probs=92.1
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+-++|+|+|||=|..++..+. ++ ...|+--+|..|.....-+.+... .+ .....+-
T Consensus 72 ~G~~lLDiGCGWG~l~~~aA~--------~y--------~v~V~GvTlS~~Q~~~~~~r~~~~--gl------~~~v~v~ 127 (283)
T COG2230 72 PGMTLLDIGCGWGGLAIYAAE--------EY--------GVTVVGVTLSEEQLAYAEKRIAAR--GL------EDNVEVR 127 (283)
T ss_pred CCCEEEEeCCChhHHHHHHHH--------Hc--------CCEEEEeeCCHHHHHHHHHHHHHc--CC------CcccEEE
Confidence 348999999999999998873 33 367777788776655543322110 00 0000111
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
.. + |..+-.. +|-|.|-=+++-+.. +-+..|++.-.+
T Consensus 128 l~----d-~rd~~e~--fDrIvSvgmfEhvg~------------------------------------~~~~~ff~~~~~ 164 (283)
T COG2230 128 LQ----D-YRDFEEP--FDRIVSVGMFEHVGK------------------------------------ENYDDFFKKVYA 164 (283)
T ss_pred ec----c-ccccccc--cceeeehhhHHHhCc------------------------------------ccHHHHHHHHHh
Confidence 11 1 3222111 676666666555433 336778888999
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccc-cccCCHHHHHHHHHhcCceEe
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIP-VYASSLQEFKEVVEANGSFVI 303 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P-~y~ps~~Ev~~~le~~gsF~i 303 (385)
-|+|||+|++-..+....... ... .++ +.+.+| -+.||.+++....++.| |.+
T Consensus 165 ~L~~~G~~llh~I~~~~~~~~-----~~~----------~~i----------~~yiFPgG~lPs~~~i~~~~~~~~-~~v 218 (283)
T COG2230 165 LLKPGGRMLLHSITGPDQEFR-----RFP----------DFI----------DKYIFPGGELPSISEILELASEAG-FVV 218 (283)
T ss_pred hcCCCceEEEEEecCCCcccc-----cch----------HHH----------HHhCCCCCcCCCHHHHHHHHHhcC-cEE
Confidence 999999999998887532100 000 011 122233 36789999999999998 888
Q ss_pred cEEEEE
Q 016644 304 NKLEVF 309 (385)
Q Consensus 304 ~~le~~ 309 (385)
...+.+
T Consensus 219 ~~~~~~ 224 (283)
T COG2230 219 LDVESL 224 (283)
T ss_pred ehHhhh
Confidence 777765
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.96 E-value=4.4e-05 Score=68.77 Aligned_cols=124 Identities=14% Similarity=0.104 Sum_probs=70.1
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..++.+.. .. + +|+..|+-......+-+.+.. ... ++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~--------~~-------~--~v~~vD~s~~~~~~a~~~~~~-----------~~~-~~-- 68 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKG--------KG-------K--CILTTDINPFAVKELRENAKL-----------NNV-GL-- 68 (179)
T ss_pred CCeEEEeCCChhHHHHHHHh--------cC-------C--EEEEEECCHHHHHHHHHHHHH-----------cCC-ce--
Confidence 46799999999998887652 11 3 788889854333332222211 001 11
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
..+-+++++. +.+++|+++|+..+|.....+.. .+....++..| ..-...+..||+.-.+-
T Consensus 69 ~~~~~d~~~~--~~~~fD~Vi~n~p~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~ 129 (179)
T TIGR00537 69 DVVMTDLFKG--VRGKFDVILFNPPYLPLEDDLRR-GDWLDVAIDGG----------------KDGRKVIDRFLDELPEI 129 (179)
T ss_pred EEEEcccccc--cCCcccEEEECCCCCCCcchhcc-cchhhhhhhcC----------------CchHHHHHHHHHhHHHh
Confidence 1233465553 34599999999988866543221 00000000000 00112356788888899
Q ss_pred hccCCeEEEEeccC
Q 016644 226 MKRCGSMFLVCLGR 239 (385)
Q Consensus 226 L~pGG~lvl~~~g~ 239 (385)
|+|||++++...+.
T Consensus 130 Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 130 LKEGGRVQLIQSSL 143 (179)
T ss_pred hCCCCEEEEEEecc
Confidence 99999998877443
No 63
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=97.94 E-value=2.6e-05 Score=69.87 Aligned_cols=109 Identities=19% Similarity=0.230 Sum_probs=67.7
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
.-+|+|+|||+|..++.+.. ++ |..+|+..|.-.+-....-+++.. ....+ +
T Consensus 32 ~~~vLDlG~G~G~i~~~la~--------~~-------~~~~v~~vDi~~~a~~~a~~n~~~-----------n~~~~--v 83 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAK--------RG-------PDAKVTAVDINPDALELAKRNAER-----------NGLEN--V 83 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHH--------TS-------TCEEEEEEESBHHHHHHHHHHHHH-----------TTCTT--E
T ss_pred CCeEEEecCChHHHHHHHHH--------hC-------CCCEEEEEcCCHHHHHHHHHHHHh-----------cCccc--c
Confidence 46799999999999988862 22 667899999854333333333321 11122 2
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
..+..+.++.+- +.++|+++|+-=+|+-.+.- ..-+..|+..-.+-
T Consensus 84 ~~~~~d~~~~~~-~~~fD~Iv~NPP~~~~~~~~---------------------------------~~~~~~~i~~a~~~ 129 (170)
T PF05175_consen 84 EVVQSDLFEALP-DGKFDLIVSNPPFHAGGDDG---------------------------------LDLLRDFIEQARRY 129 (170)
T ss_dssp EEEESSTTTTCC-TTCEEEEEE---SBTTSHCH---------------------------------HHHHHHHHHHHHHH
T ss_pred cccccccccccc-ccceeEEEEccchhcccccc---------------------------------hhhHHHHHHHHHHh
Confidence 234457776654 89999999985544422100 11245566777899
Q ss_pred hccCCeEEEEe
Q 016644 226 MKRCGSMFLVC 236 (385)
Q Consensus 226 L~pGG~lvl~~ 236 (385)
|+|||.|++..
T Consensus 130 Lk~~G~l~lv~ 140 (170)
T PF05175_consen 130 LKPGGRLFLVI 140 (170)
T ss_dssp EEEEEEEEEEE
T ss_pred ccCCCEEEEEe
Confidence 99999998765
No 64
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=97.87 E-value=3.2e-05 Score=78.09 Aligned_cols=111 Identities=12% Similarity=0.147 Sum_probs=67.1
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA 146 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~ 146 (385)
-+|+|+|||+|..++.+. +++ |..+|++.|...--....-+++... ......++ .
T Consensus 230 ~~VLDLGCGtGvi~i~la--------~~~-------P~~~V~~vD~S~~Av~~A~~N~~~n--------~~~~~~~v--~ 284 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLL--------DKN-------PQAKVVFVDESPMAVASSRLNVETN--------MPEALDRC--E 284 (378)
T ss_pred CeEEEEeccccHHHHHHH--------HhC-------CCCEEEEEECCHHHHHHHHHHHHHc--------CcccCceE--E
Confidence 589999999999887765 222 7789999998532222222222100 00000011 1
Q ss_pred cccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644 147 GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM 226 (385)
Q Consensus 147 ~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL 226 (385)
.+.++.+..+ ++.++|+|+|+--+|+.......+ ...+++.-.+-|
T Consensus 285 ~~~~D~l~~~-~~~~fDlIlsNPPfh~~~~~~~~i---------------------------------a~~l~~~a~~~L 330 (378)
T PRK15001 285 FMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNV---------------------------------AWEMFHHARRCL 330 (378)
T ss_pred EEEccccccC-CCCCEEEEEECcCcccCccCCHHH---------------------------------HHHHHHHHHHhc
Confidence 1233445544 567899999999999854322211 123556667889
Q ss_pred ccCCeEEEEe
Q 016644 227 KRCGSMFLVC 236 (385)
Q Consensus 227 ~pGG~lvl~~ 236 (385)
+|||+|+++.
T Consensus 331 kpGG~L~iV~ 340 (378)
T PRK15001 331 KINGELYIVA 340 (378)
T ss_pred ccCCEEEEEE
Confidence 9999998884
No 65
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=97.85 E-value=1.3e-05 Score=65.16 Aligned_cols=99 Identities=22% Similarity=0.318 Sum_probs=60.9
Q ss_pred EeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccc
Q 016644 69 LADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGV 148 (385)
Q Consensus 69 IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~v 148 (385)
|+|+|||+|.++..+.... +. .|+.+++.-|+-.+.....-+.... ...+.-|+.+
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~-----------~~~~~~~gvD~s~~~l~~~~~~~~~-----------~~~~~~~~~~- 56 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA-----------GPSSRVIGVDISPEMLELAKKRFSE-----------DGPKVRFVQA- 56 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----------------SEEEEEES-HHHHHHHHHHSHH-----------TTTTSEEEES-
T ss_pred CEEeecCCcHHHHHHHHHh-hh-----------cccceEEEEECCHHHHHHHHHhchh-----------cCCceEEEEC-
Confidence 7999999999999887442 11 1458899999866554444333310 0011223333
Q ss_pred cCcccccc-CCCCcccEEEcccc-cccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644 149 PGSFYRRL-FPTRSIDFFHSAFS-LHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM 226 (385)
Q Consensus 149 pgSFy~rL-fP~~Svd~~~Ss~a-lHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL 226 (385)
++ ..+ ++.+++|+++++.. +|++++ +++..+|+.-++-|
T Consensus 57 --D~-~~l~~~~~~~D~v~~~~~~~~~~~~------------------------------------~~~~~ll~~~~~~l 97 (101)
T PF13649_consen 57 --DA-RDLPFSDGKFDLVVCSGLSLHHLSP------------------------------------EELEALLRRIARLL 97 (101)
T ss_dssp --CT-TCHHHHSSSEEEEEE-TTGGGGSSH------------------------------------HHHHHHHHHHHHTE
T ss_pred --CH-hHCcccCCCeeEEEEcCCccCCCCH------------------------------------HHHHHHHHHHHHHh
Confidence 43 334 67889999999655 998654 23567778889999
Q ss_pred ccCC
Q 016644 227 KRCG 230 (385)
Q Consensus 227 ~pGG 230 (385)
+|||
T Consensus 98 ~pgG 101 (101)
T PF13649_consen 98 RPGG 101 (101)
T ss_dssp EEEE
T ss_pred CCCC
Confidence 9998
No 66
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.83 E-value=8.5e-05 Score=72.35 Aligned_cols=147 Identities=18% Similarity=0.198 Sum_probs=98.6
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+--+|+|+||+.|.-+.++. .+ .+ -.|+--| |+-.|..-|+.+..+. . ....+|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~--------~~-------GA-~~ViGiD-P~~lf~~QF~~i~~~l-------g--~~~~~~ 168 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRML--------GR-------GA-KSVIGID-PSPLFYLQFEAIKHFL-------G--QDPPVF 168 (315)
T ss_pred CCCEEEEecCCCcHHHHHHh--------hc-------CC-CEEEEEC-CChHHHHHHHHHHHHh-------C--CCccEE
Confidence 34689999999999998886 11 13 4566666 6667777666554321 1 112344
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
.. |-. .+.|-..+++|.|||-=.|=-+.+.=.. |..-..
T Consensus 169 ~l--plg-vE~Lp~~~~FDtVF~MGVLYHrr~Pl~~--------------------------------------L~~Lk~ 207 (315)
T PF08003_consen 169 EL--PLG-VEDLPNLGAFDTVFSMGVLYHRRSPLDH--------------------------------------LKQLKD 207 (315)
T ss_pred Ec--Ccc-hhhccccCCcCEEEEeeehhccCCHHHH--------------------------------------HHHHHH
Confidence 43 222 5666447899999998776555442222 233567
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV 302 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~ 302 (385)
-|+|||.||+.++..+.... . -++.++.+..++--++.||+.-+...++.+| |+
T Consensus 208 ~L~~gGeLvLETlvi~g~~~-------~----------------~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~g-F~ 261 (315)
T PF08003_consen 208 SLRPGGELVLETLVIDGDEN-------T----------------VLVPEDRYAKMRNVWFIPSVAALKNWLERAG-FK 261 (315)
T ss_pred hhCCCCEEEEEEeeecCCCc-------e----------------EEccCCcccCCCceEEeCCHHHHHHHHHHcC-Cc
Confidence 89999999999988752210 1 1244556778888899999999999999999 86
No 67
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=97.81 E-value=4.7e-05 Score=63.21 Aligned_cols=38 Identities=16% Similarity=0.246 Sum_probs=28.1
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchH
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFN 118 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn 118 (385)
..+|+|+|||+|..+..+.+.. |..+|+..|+-..-..
T Consensus 20 ~~~vldlG~G~G~~~~~l~~~~---------------~~~~v~~vD~s~~~~~ 57 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAARLV---------------PNGRVYAIERNPEALR 57 (124)
T ss_pred CCEEEEeCCCCCHHHHHHHHHC---------------CCceEEEEcCCHHHHH
Confidence 3589999999999988886322 4578899998544333
No 68
>PHA03411 putative methyltransferase; Provisional
Probab=97.77 E-value=0.00017 Score=69.69 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=70.5
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
.-+|+|+|||+|..++.+.. +. +..+|+..|+-.......-+.++. .-+
T Consensus 65 ~grVLDLGcGsGilsl~la~--------r~-------~~~~V~gVDisp~al~~Ar~n~~~---------------v~~- 113 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLH--------RC-------KPEKIVCVELNPEFARIGKRLLPE---------------AEW- 113 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHH--------hC-------CCCEEEEEECCHHHHHHHHHhCcC---------------CEE-
Confidence 35899999999988776642 11 346889999854322222222211 112
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHH--HHHHHHHHHH
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQT--DLAAFLGARS 223 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~--D~~~FL~~Ra 223 (385)
+-+++.+ +.+..++|+|+|+-.++++...... + -..|..|.. ..+ .+..||+..+
T Consensus 114 --v~~D~~e-~~~~~kFDlIIsNPPF~~l~~~d~~--~--~~~~~GG~~----------------g~~~l~~~~~l~~v~ 170 (279)
T PHA03411 114 --ITSDVFE-FESNEKFDVVISNPPFGKINTTDTK--D--VFEYTGGEF----------------EFKVMTLGQKFADVG 170 (279)
T ss_pred --EECchhh-hcccCCCcEEEEcCCccccCchhhh--h--hhhhccCcc----------------ccccccHHHHHhhhH
Confidence 2345543 3356789999999999996432111 1 011111100 001 1567888899
Q ss_pred hhhccCCeEEEEeccC
Q 016644 224 KEMKRCGSMFLVCLGR 239 (385)
Q Consensus 224 ~EL~pGG~lvl~~~g~ 239 (385)
.-|+|+|.+.+...|+
T Consensus 171 ~~L~p~G~~~~~yss~ 186 (279)
T PHA03411 171 YFIVPTGSAGFAYSGR 186 (279)
T ss_pred heecCCceEEEEEecc
Confidence 9999999888776555
No 69
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.74 E-value=0.00017 Score=67.92 Aligned_cols=200 Identities=15% Similarity=0.148 Sum_probs=108.5
Q ss_pred hhHHhHHHHHHHH--------HHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCC
Q 016644 29 SYANNSQAQAIHA--------QSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGY 100 (385)
Q Consensus 29 sY~~nS~~Q~~~~--------~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~ 100 (385)
-|..++.-+.... -.-..+|.+....+.. .+ ...+.+|+++|||.|..++-+++..
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~--~~-~~~~~~ilEvGCGvGNtvfPll~~~------------- 93 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLP--VD-EKSAETILEVGCGVGNTVFPLLKTS------------- 93 (264)
T ss_pred hhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhC--cc-ccChhhheeeccCCCcccchhhhcC-------------
Confidence 3555555554443 1134455554444422 11 1123489999999998777776322
Q ss_pred CCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchh
Q 016644 101 EPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPES 180 (385)
Q Consensus 101 ~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~ 180 (385)
+.+.+.||..|-..+--+-+-++-. |.... ...|++-.-++=...-++.+|+|++..-+.| |-+|+.
T Consensus 94 ~n~~l~v~acDfsp~Ai~~vk~~~~--------~~e~~--~~afv~Dlt~~~~~~~~~~~svD~it~IFvL---SAi~pe 160 (264)
T KOG2361|consen 94 PNNRLKVYACDFSPRAIELVKKSSG--------YDESR--VEAFVWDLTSPSLKEPPEEGSVDIITLIFVL---SAIHPE 160 (264)
T ss_pred CCCCeEEEEcCCChHHHHHHHhccc--------cchhh--hcccceeccchhccCCCCcCccceEEEEEEE---eccChH
Confidence 3345999998887654443322211 00000 0112222222213444677888887655543 444443
Q ss_pred hhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHH
Q 016644 181 ALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQD 260 (385)
Q Consensus 181 l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~ 260 (385)
- +.+=+..-.+-|||||.|++-=.|+.+.. .+.
T Consensus 161 k---------------------------------~~~a~~nl~~llKPGG~llfrDYg~~Dla-------------qlR- 193 (264)
T KOG2361|consen 161 K---------------------------------MQSVIKNLRTLLKPGGSLLFRDYGRYDLA-------------QLR- 193 (264)
T ss_pred H---------------------------------HHHHHHHHHHHhCCCcEEEEeecccchHH-------------HHh-
Confidence 2 22223556789999999999888875320 000
Q ss_pred HHHHHHHcCCccccccc-ccccccccCCHHHHHHHHHhcCceEecEEEEE
Q 016644 261 AWNDLVQEGLITGEKRD-SFNIPVYASSLQEFKEVVEANGSFVINKLEVF 309 (385)
Q Consensus 261 al~~mv~eG~i~~e~~d-~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~~ 309 (385)
-. .+-.|++..+- +==-+.||-+.+|+..++.+.| |...++++-
T Consensus 194 ---F~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~ag-f~~~~~~~~ 238 (264)
T KOG2361|consen 194 ---FK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKAG-FEEVQLEVD 238 (264)
T ss_pred ---cc-CCceeecceEEccCCceeeeccHHHHHHHHHhcc-cchhcccce
Confidence 00 12222211111 1114789999999999999999 877666654
No 70
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=97.71 E-value=7.2e-05 Score=75.60 Aligned_cols=110 Identities=15% Similarity=0.258 Sum_probs=71.3
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA 146 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~ 146 (385)
-.++|+|||+|..++.+.. +. |+.+++--|+-......+-+.... ....++.+
T Consensus 124 p~vLEIGcGsG~~ll~lA~--------~~-------P~~~~iGIEI~~~~i~~a~~ka~~-----------~gL~NV~~- 176 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAK--------NN-------PNKLFIGIEIHTPSIEQVLKQIEL-----------LNLKNLLI- 176 (390)
T ss_pred CeEEEEcCcccHHHHHHHH--------hC-------CCCCEEEEECCHHHHHHHHHHHHH-----------cCCCcEEE-
Confidence 4789999999998887762 22 778899989854444444333221 11223322
Q ss_pred cccCcc--ccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 147 GVPGSF--YRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 147 ~vpgSF--y~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
+.++- .-..+|++++|.++.++...|..+... ++ -...||..-++
T Consensus 177 -i~~DA~~ll~~~~~~s~D~I~lnFPdPW~KkrHR-------------Rl-------------------v~~~fL~e~~R 223 (390)
T PRK14121 177 -INYDARLLLELLPSNSVEKIFVHFPVPWDKKPHR-------------RV-------------------ISEDFLNEALR 223 (390)
T ss_pred -EECCHHHhhhhCCCCceeEEEEeCCCCccccchh-------------hc-------------------cHHHHHHHHHH
Confidence 22232 224589999999999888888332110 11 13567788899
Q ss_pred hhccCCeEEEEe
Q 016644 225 EMKRCGSMFLVC 236 (385)
Q Consensus 225 EL~pGG~lvl~~ 236 (385)
-|+|||.+.+.+
T Consensus 224 vLkpGG~l~l~T 235 (390)
T PRK14121 224 VLKPGGTLELRT 235 (390)
T ss_pred HcCCCcEEEEEE
Confidence 999999998766
No 71
>PRK14967 putative methyltransferase; Provisional
Probab=97.70 E-value=0.00036 Score=65.23 Aligned_cols=167 Identities=16% Similarity=0.090 Sum_probs=88.3
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..++.+.. . ..-+++..|+...-....-+++.. ... ++
T Consensus 37 ~~~vLDlGcG~G~~~~~la~--------~--------~~~~v~~vD~s~~~l~~a~~n~~~-----------~~~-~~-- 86 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAA--------A--------GAGSVTAVDISRRAVRSARLNALL-----------AGV-DV-- 86 (223)
T ss_pred CCeEEEecCCHHHHHHHHHH--------c--------CCCeEEEEECCHHHHHHHHHHHHH-----------hCC-ee--
Confidence 36899999999998877642 1 113678888754322222222110 001 11
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcc-cccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDK-RSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~-~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
..+-+++.. .++++++|+|+++--.+..+... ..+. ....|+.+ .--..++..|++.-.+
T Consensus 87 ~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~--~~~~~~~~~~~~~----------------~~~~~~~~~~l~~a~~ 147 (223)
T PRK14967 87 DVRRGDWAR-AVEFRPFDVVVSNPPYVPAPPDA--PPSRGPARAWDAG----------------PDGRAVLDRLCDAAPA 147 (223)
T ss_pred EEEECchhh-hccCCCeeEEEECCCCCCCCccc--ccccChhHhhhCC----------------CcHHHHHHHHHHHHHH
Confidence 123346655 45788999999975433322211 0000 00011100 0012346778888889
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcC
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANG 299 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~g 299 (385)
-|+|||++++...... . +.+.++.+...| +..+.+....+|+ .+..-.....+++.|
T Consensus 148 ~Lk~gG~l~~~~~~~~---------------~-~~~~~~~l~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 204 (223)
T PRK14967 148 LLAPGGSLLLVQSELS---------------G-VERTLTRLSEAG-LDAEVVASQWIPF-GPVLRARAAWLERRG 204 (223)
T ss_pred hcCCCcEEEEEEeccc---------------C-HHHHHHHHHHCC-CCeEEEEeeccCc-cHHHHHHHHHHHHcC
Confidence 9999999987654431 0 334444454445 4455555555664 332333446677787
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.66 E-value=0.00015 Score=67.05 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=48.0
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..|..+...+ .+.-+|+--|.-.+.....-+.+... +-..++
T Consensus 73 ~~~VLDiG~GsG~~~~~la~~~--------------~~~g~V~~iD~~~~~~~~a~~~l~~~----------~~~~~v-- 126 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCAEAI--------------ERRGKVYTVEIVKELAIYAAQNIERL----------GYWGVV-- 126 (205)
T ss_pred CCEEEEECcCccHHHHHHHHhc--------------CCCCEEEEEeCCHHHHHHHHHHHHHc----------CCCCcE--
Confidence 4789999999999997775322 02246787787543332222222210 001112
Q ss_pred ccccCccccccCCCCcccEEEcccccccc
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWL 174 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWL 174 (385)
.-+-+++.+-+.+.+++|.+++..+++++
T Consensus 127 ~~~~~d~~~~~~~~~~fD~Ii~~~~~~~~ 155 (205)
T PRK13944 127 EVYHGDGKRGLEKHAPFDAIIVTAAASTI 155 (205)
T ss_pred EEEECCcccCCccCCCccEEEEccCcchh
Confidence 12234554444456799999999998764
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=97.65 E-value=0.00012 Score=68.91 Aligned_cols=128 Identities=12% Similarity=0.062 Sum_probs=72.4
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
...+|+|+|||+|..++.+.... |..+++..|.-..-....-+.+.. ....++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~---------------~~~~v~~iD~~~~~~~~a~~~~~~-----------~~~~~~- 139 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER---------------PDARVTAVDISPEALAVARKNAAR-----------LGLDNV- 139 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHHHH-----------cCCCeE-
Confidence 34689999999999888776321 457888888754444433222211 001111
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCc---hhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVP---ESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA 221 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P---~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~ 221 (385)
..+.+++.+ .++++++|+|+|+--.+..+... ..+.. + .|...-.-......++..|++.
T Consensus 140 -~~~~~d~~~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~-----~----------e~~~~~~~~~~~~~~~~~~i~~ 202 (251)
T TIGR03534 140 -TFLQSDWFE-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRF-----H----------EPRLALFGGEDGLDFYRRIIAQ 202 (251)
T ss_pred -EEEECchhc-cCcCCceeEEEECCCCCchhhhhhcChhhhh-----c----------CCHHHHcCCCcHHHHHHHHHHH
Confidence 123346555 45789999999975544322211 11100 0 0000000011233567788899
Q ss_pred HHhhhccCCeEEEEe
Q 016644 222 RSKEMKRCGSMFLVC 236 (385)
Q Consensus 222 Ra~EL~pGG~lvl~~ 236 (385)
-.+.|+|||++++..
T Consensus 203 ~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 203 APRLLKPGGWLLLEI 217 (251)
T ss_pred HHHhcccCCEEEEEE
Confidence 999999999998864
No 74
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.65 E-value=0.00038 Score=64.36 Aligned_cols=159 Identities=14% Similarity=0.194 Sum_probs=96.0
Q ss_pred EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecc
Q 016644 68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAG 147 (385)
Q Consensus 68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~ 147 (385)
+|+++|||||--+..+...+ |.+++.=+|+..+-+.++-.-+....- .+-..++.+-+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~l---------------P~l~WqPSD~~~~~~~sI~a~~~~~~~-------~Nv~~P~~lDv 85 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQAL---------------PHLTWQPSDPDDNLRPSIRAWIAEAGL-------PNVRPPLALDV 85 (204)
T ss_pred eEEEEcCCccHHHHHHHHHC---------------CCCEEcCCCCChHHHhhHHHHHHhcCC-------cccCCCeEeec
Confidence 69999999999888887444 789999999988887776542221000 00011111100
Q ss_pred -cc-Ccccc-ccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 148 -VP-GSFYR-RLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 148 -vp-gSFy~-rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
-+ -+.-. --++.+++|.++|.+.+|-.+- ... ..+++.-++
T Consensus 86 ~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~---~~~---------------------------------~~lf~~a~~ 129 (204)
T PF06080_consen 86 SAPPWPWELPAPLSPESFDAIFCINMLHISPW---SAV---------------------------------EGLFAGAAR 129 (204)
T ss_pred CCCCCccccccccCCCCcceeeehhHHHhcCH---HHH---------------------------------HHHHHHHHH
Confidence 01 01000 1136889999999999998643 211 123456689
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEec
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVIN 304 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~ 304 (385)
-|+|||.|++--+=..+...+.+.+ ..+.+.|++- +--|-.|..++|.++-.+.| ++..
T Consensus 130 ~L~~gG~L~~YGPF~~~G~~ts~SN------~~FD~sLr~r--------------dp~~GiRD~e~v~~lA~~~G-L~l~ 188 (204)
T PF06080_consen 130 LLKPGGLLFLYGPFNRDGKFTSESN------AAFDASLRSR--------------DPEWGIRDIEDVEALAAAHG-LELE 188 (204)
T ss_pred hCCCCCEEEEeCCcccCCEeCCcHH------HHHHHHHhcC--------------CCCcCccCHHHHHHHHHHCC-CccC
Confidence 9999999988765443332222211 2234444321 22366789999999999999 6644
Q ss_pred E
Q 016644 305 K 305 (385)
Q Consensus 305 ~ 305 (385)
.
T Consensus 189 ~ 189 (204)
T PF06080_consen 189 E 189 (204)
T ss_pred c
Confidence 3
No 75
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=97.65 E-value=0.00012 Score=64.95 Aligned_cols=103 Identities=12% Similarity=0.131 Sum_probs=62.6
Q ss_pred ccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeE
Q 016644 154 RRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSM 232 (385)
Q Consensus 154 ~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~l 232 (385)
+.| ++++++|++++++++||+.+... +|+.-++-|+|||+|
T Consensus 36 ~~lp~~~~~fD~v~~~~~l~~~~d~~~--------------------------------------~l~ei~rvLkpGG~l 77 (160)
T PLN02232 36 IDLPFDDCEFDAVTMGYGLRNVVDRLR--------------------------------------AMKEMYRVLKPGSRV 77 (160)
T ss_pred hhCCCCCCCeeEEEecchhhcCCCHHH--------------------------------------HHHHHHHHcCcCeEE
Confidence 344 78899999999999999865333 345578999999999
Q ss_pred EEEeccCCCCCCCCCCCCccchHHHHHHHHH---HHHHcCCcccccccccccc----cccCCHHHHHHHHHhcCceEecE
Q 016644 233 FLVCLGRTSADPTDQGGPGILFGTHFQDAWN---DLVQEGLITGEKRDSFNIP----VYASSLQEFKEVVEANGSFVINK 305 (385)
Q Consensus 233 vl~~~g~~~~~~~~~~~~~~~~~~~l~~al~---~mv~eG~i~~e~~d~f~~P----~y~ps~~Ev~~~le~~gsF~i~~ 305 (385)
++.-++..+.. + ......|. -++.-|.+... .+.+..- ..+++++|+.+.+++.| |+..+
T Consensus 78 ~i~d~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~~~-~~~y~yl~~si~~f~~~~el~~ll~~aG-F~~~~ 144 (160)
T PLN02232 78 SILDFNKSNQS----------V-TTFMQGWMIDNVVVPVATVYDL-AKEYEYLKYSINGYLTGEELETLALEAG-FSSAC 144 (160)
T ss_pred EEEECCCCChH----------H-HHHHHHHHccchHhhhhHHhCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcC-CCcce
Confidence 98877653210 0 00111111 01111211111 1222211 35899999999999999 87544
Q ss_pred EE
Q 016644 306 LE 307 (385)
Q Consensus 306 le 307 (385)
..
T Consensus 145 ~~ 146 (160)
T PLN02232 145 HY 146 (160)
T ss_pred EE
Confidence 33
No 76
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=97.63 E-value=0.00015 Score=66.34 Aligned_cols=100 Identities=14% Similarity=0.107 Sum_probs=60.9
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..++.+.... |..+|+.-|.-......+-+.+.. ....++
T Consensus 46 g~~VLDiGcGtG~~al~la~~~---------------~~~~V~giD~s~~~l~~A~~~~~~-----------~~l~~i-- 97 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIAR---------------PELKVTLVDSLGKKIAFLREVAAE-----------LGLKNV-- 97 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHC---------------CCCeEEEEeCcHHHHHHHHHHHHH-----------cCCCCE--
Confidence 5789999999999888876321 457888888754332222221111 001111
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
..+.++.. .+-+.+++|+++|... . ++..|++..++-
T Consensus 98 ~~~~~d~~-~~~~~~~fDlV~~~~~----~--------------------------------------~~~~~l~~~~~~ 134 (187)
T PRK00107 98 TVVHGRAE-EFGQEEKFDVVTSRAV----A--------------------------------------SLSDLVELCLPL 134 (187)
T ss_pred EEEeccHh-hCCCCCCccEEEEccc----c--------------------------------------CHHHHHHHHHHh
Confidence 12333432 2333679999998531 0 134566778899
Q ss_pred hccCCeEEEEe
Q 016644 226 MKRCGSMFLVC 236 (385)
Q Consensus 226 L~pGG~lvl~~ 236 (385)
|+|||++++..
T Consensus 135 LkpGG~lv~~~ 145 (187)
T PRK00107 135 LKPGGRFLALK 145 (187)
T ss_pred cCCCeEEEEEe
Confidence 99999998875
No 77
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=97.62 E-value=0.00052 Score=62.17 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=26.9
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS 114 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~ 114 (385)
+..+|+|+|||+|..++.+... + |..+|+.-|.-.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~--------~-------~~~~v~~vD~s~ 65 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQ--------F-------PSLQVTAIERNP 65 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHH--------C-------CCCEEEEEECCH
Confidence 3468999999999999888632 2 557888889844
No 78
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=97.57 E-value=0.00021 Score=67.99 Aligned_cols=76 Identities=25% Similarity=0.345 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHH
Q 016644 214 DLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKE 293 (385)
Q Consensus 214 D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~ 293 (385)
|...||.+..+-|+|||+|+++..-|.-. + ..+..+ +.+....+|-.|.-. +--|.+++|+..
T Consensus 173 dp~~~l~~l~~~lkP~G~lfittinrt~l--S---~~~~i~---~~E~vl~ivp~Gth~---------~ekfi~p~e~~~ 235 (282)
T KOG1270|consen 173 DPQEFLNCLSALLKPNGRLFITTINRTIL--S---FAGTIF---LAEIVLRIVPKGTHT---------WEKFINPEELTS 235 (282)
T ss_pred CHHHHHHHHHHHhCCCCceEeeehhhhHH--H---hhcccc---HHHHHHHhcCCCCcC---------HHHcCCHHHHHH
Confidence 45567788999999999999999888411 0 111222 333333366677543 445799999999
Q ss_pred HHHhcCceEecEEE
Q 016644 294 VVEANGSFVINKLE 307 (385)
Q Consensus 294 ~le~~gsF~i~~le 307 (385)
+++.++ +.++.+.
T Consensus 236 ~l~~~~-~~v~~v~ 248 (282)
T KOG1270|consen 236 ILNANG-AQVNDVV 248 (282)
T ss_pred HHHhcC-cchhhhh
Confidence 999997 7765544
No 79
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=97.55 E-value=0.00034 Score=68.08 Aligned_cols=130 Identities=11% Similarity=0.086 Sum_probs=68.5
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
+.+|+|+|||+|..++.+... + |..+|+..|.-..-....-++.... +-..++
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~--------~-------~~~~v~avDis~~al~~A~~n~~~~----------~~~~~i-- 174 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYA--------F-------PEAEVDAVDISPDALAVAEINIERH----------GLEDRV-- 174 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHH--------C-------CCCEEEEEECCHHHHHHHHHHHHHc----------CCCCcE--
Confidence 468999999999988887632 2 5578999998543333333322110 000122
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYK-KQFQTDLAAFLGARSK 224 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~-~q~~~D~~~FL~~Ra~ 224 (385)
..+-+++++.+ |++++|+++|+ |+.+....-....+ .+ ...|. ...+. ..--.....|++.-.+
T Consensus 175 ~~~~~D~~~~~-~~~~fD~Iv~N---------PPy~~~~~~~~l~~-~~---~~ep~-~al~gg~dGl~~~~~il~~a~~ 239 (284)
T TIGR03533 175 TLIQSDLFAAL-PGRKYDLIVSN---------PPYVDAEDMADLPA-EY---HHEPE-LALASGEDGLDLVRRILAEAAD 239 (284)
T ss_pred EEEECchhhcc-CCCCccEEEEC---------CCCCCccchhhCCH-hh---hcCHH-HHhcCCCcHHHHHHHHHHHHHH
Confidence 11234655543 67789999997 33221100000000 00 00010 00000 0112344668888889
Q ss_pred hhccCCeEEEEec
Q 016644 225 EMKRCGSMFLVCL 237 (385)
Q Consensus 225 EL~pGG~lvl~~~ 237 (385)
-|+|||++++.+.
T Consensus 240 ~L~~gG~l~~e~g 252 (284)
T TIGR03533 240 HLNENGVLVVEVG 252 (284)
T ss_pred hcCCCCEEEEEEC
Confidence 9999999998774
No 80
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00022 Score=67.91 Aligned_cols=126 Identities=13% Similarity=0.125 Sum_probs=80.0
Q ss_pred CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644 64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY 143 (385)
Q Consensus 64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~ 143 (385)
+..-+|+|+|||+|..++++.+ ++ ++.++..-++-.-......+++... ..+ .++
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~--------r~-------~~a~I~~VEiq~~~a~~A~~nv~ln--~l~--------~ri 97 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQ--------RT-------EKAKIVGVEIQEEAAEMAQRNVALN--PLE--------ERI 97 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhc--------cC-------CCCcEEEEEeCHHHHHHHHHHHHhC--cch--------hce
Confidence 3478999999999999998873 22 3366666666655555555554320 000 011
Q ss_pred eeccccCcc--ccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSF--YRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA 221 (385)
Q Consensus 144 f~~~vpgSF--y~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~ 221 (385)
..+-.++ +.+-.+..++|+|+|+ |+... -... .+..+.++..+-+..-++..+++.
T Consensus 98 --~v~~~Di~~~~~~~~~~~fD~Ii~N---------PPyf~---------~~~~--~~~~~~~~~Ar~e~~~~le~~i~~ 155 (248)
T COG4123 98 --QVIEADIKEFLKALVFASFDLIICN---------PPYFK---------QGSR--LNENPLRAIARHEITLDLEDLIRA 155 (248)
T ss_pred --eEehhhHHHhhhcccccccCEEEeC---------CCCCC---------Cccc--cCcChhhhhhhhhhcCCHHHHHHH
Confidence 1111233 2344555689999986 55432 2222 122335666677778889999999
Q ss_pred HHhhhccCCeEEEEe
Q 016644 222 RSKEMKRCGSMFLVC 236 (385)
Q Consensus 222 Ra~EL~pGG~lvl~~ 236 (385)
-++-|||||++.++.
T Consensus 156 a~~~lk~~G~l~~V~ 170 (248)
T COG4123 156 AAKLLKPGGRLAFVH 170 (248)
T ss_pred HHHHccCCCEEEEEe
Confidence 999999999998876
No 81
>PRK04266 fibrillarin; Provisional
Probab=97.52 E-value=0.0011 Score=62.55 Aligned_cols=35 Identities=14% Similarity=0.250 Sum_probs=25.4
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN 115 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N 115 (385)
..+|+|+|||+|..|+.+...+ +.-.|+.-|+-..
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v---------------~~g~V~avD~~~~ 107 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIV---------------EEGVVYAVEFAPR 107 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhc---------------CCCeEEEEECCHH
Confidence 4699999999999988775322 2347888887544
No 82
>PTZ00146 fibrillarin; Provisional
Probab=97.51 E-value=0.0016 Score=63.61 Aligned_cols=61 Identities=16% Similarity=0.225 Sum_probs=38.0
Q ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEe
Q 016644 30 YANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFF 109 (385)
Q Consensus 30 Y~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~ 109 (385)
|-.=.+.+.+.+++++-=|+ .+.+ .+-.+|+|+|||+|..|..+...+ .++=.||-
T Consensus 107 yR~w~p~rSKlaa~i~~g~~----~l~I------kpG~~VLDLGaG~G~~t~~lAdiV--------------G~~G~VyA 162 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVA----NIPI------KPGSKVLYLGAASGTTVSHVSDLV--------------GPEGVVYA 162 (293)
T ss_pred eeeeCCcccHHHHHHHCCcc----eecc------CCCCEEEEeCCcCCHHHHHHHHHh--------------CCCCEEEE
Confidence 66666777666555433333 2322 233689999999999888776433 12347888
Q ss_pred cCCCC
Q 016644 110 SDLPS 114 (385)
Q Consensus 110 nDLp~ 114 (385)
-|+..
T Consensus 163 VD~s~ 167 (293)
T PTZ00146 163 VEFSH 167 (293)
T ss_pred EECcH
Confidence 77643
No 83
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.50 E-value=0.00044 Score=62.77 Aligned_cols=104 Identities=15% Similarity=0.131 Sum_probs=62.6
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|..|..+.... . +.-+|+..|+-.-. .++. --+
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~--------~------~~~~v~~vDis~~~------~~~~---------------i~~ 76 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQV--------G------GKGRVIAVDLQPMK------PIEN---------------VDF 76 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHh--------C------CCceEEEEeccccc------cCCC---------------ceE
Confidence 34689999999999877775322 0 23467777773311 0110 011
Q ss_pred eccccCcccc--------ccCCCCcccEEEcccccc----cccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYR--------RLFPTRSIDFFHSAFSLH----WLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQ 212 (385)
Q Consensus 145 ~~~vpgSFy~--------rLfP~~Svd~~~Ss~alH----WLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~ 212 (385)
+.+ ++.+ +.+|.+++|+++|..+.| |.-+.+. ..
T Consensus 77 ~~~---d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~-------------------------------~~ 122 (188)
T TIGR00438 77 IRG---DFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLR-------------------------------SI 122 (188)
T ss_pred EEe---eCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHH-------------------------------HH
Confidence 211 3221 236788999999976543 3211111 12
Q ss_pred HHHHHHHHHHHhhhccCCeEEEEec
Q 016644 213 TDLAAFLGARSKEMKRCGSMFLVCL 237 (385)
Q Consensus 213 ~D~~~FL~~Ra~EL~pGG~lvl~~~ 237 (385)
++...+|+.-.+-|+|||++++..+
T Consensus 123 ~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 123 DLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHHHHHHHHccCCCEEEEEEc
Confidence 3466778888999999999998753
No 84
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=97.50 E-value=0.00048 Score=53.64 Aligned_cols=102 Identities=23% Similarity=0.247 Sum_probs=62.0
Q ss_pred EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecc
Q 016644 68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAG 147 (385)
Q Consensus 68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~ 147 (385)
+|+|+|||.|.++..+.. .+..+++..|+..+-....-+..... .....-|.
T Consensus 1 ~ildig~G~G~~~~~~~~----------------~~~~~~~~~d~~~~~~~~~~~~~~~~----------~~~~~~~~-- 52 (107)
T cd02440 1 RVLDLGCGTGALALALAS----------------GPGARVTGVDISPVALELARKAAAAL----------LADNVEVL-- 52 (107)
T ss_pred CeEEEcCCccHHHHHHhc----------------CCCCEEEEEeCCHHHHHHHHHHHhcc----------cccceEEE--
Confidence 589999999998777752 03468888888654333332111100 00111122
Q ss_pred ccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644 148 VPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM 226 (385)
Q Consensus 148 vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL 226 (385)
-+++.+.. .+.+++|+++++..+++.+ .+...+|+...+-|
T Consensus 53 -~~~~~~~~~~~~~~~d~i~~~~~~~~~~-------------------------------------~~~~~~l~~~~~~l 94 (107)
T cd02440 53 -KGDAEELPPEADESFDVIISDPPLHHLV-------------------------------------EDLARFLEEARRLL 94 (107)
T ss_pred -EcChhhhccccCCceEEEEEccceeehh-------------------------------------hHHHHHHHHHHHHc
Confidence 22433333 3678899999999999861 12344556667778
Q ss_pred ccCCeEEEE
Q 016644 227 KRCGSMFLV 235 (385)
Q Consensus 227 ~pGG~lvl~ 235 (385)
+|||+++++
T Consensus 95 ~~~g~~~~~ 103 (107)
T cd02440 95 KPGGVLVLT 103 (107)
T ss_pred CCCCEEEEE
Confidence 999999876
No 85
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=97.49 E-value=0.00051 Score=63.80 Aligned_cols=81 Identities=7% Similarity=-0.015 Sum_probs=45.0
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|.+|..+.... .++.+|+-.|.-..-....-+.+... ...++
T Consensus 77 ~~~~VLDiG~GsG~~a~~la~~~--------------~~~g~V~~vD~~~~~~~~A~~~~~~~-----------g~~~v- 130 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVLAEIV--------------GRDGLVVSIERIPELAEKAERRLRKL-----------GLDNV- 130 (215)
T ss_pred CcCEEEEECCCccHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHC-----------CCCCe-
Confidence 34799999999999998765322 12456787776432222222222110 01121
Q ss_pred eccccCccccccCCCCcccEEEcccccc
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLH 172 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alH 172 (385)
..+.++..+-+.+.+++|++++..+.+
T Consensus 131 -~~~~~d~~~~~~~~~~fD~Ii~~~~~~ 157 (215)
T TIGR00080 131 -IVIVGDGTQGWEPLAPYDRIYVTAAGP 157 (215)
T ss_pred -EEEECCcccCCcccCCCCEEEEcCCcc
Confidence 122345544444557899999876643
No 86
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=97.48 E-value=0.0004 Score=64.60 Aligned_cols=82 Identities=6% Similarity=-0.086 Sum_probs=46.6
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|..|..+...+ .+.-+|+--|.-..-....-+.+.. ....++
T Consensus 76 ~g~~VLdIG~GsG~~t~~la~~~--------------~~~~~V~~vE~~~~~~~~a~~~l~~-----------~g~~~v- 129 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVAEIV--------------GKSGKVVTIERIPELAEKAKKTLKK-----------LGYDNV- 129 (212)
T ss_pred CcCEEEEECCcccHHHHHHHHhc--------------CCCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCCe-
Confidence 35799999999999997765321 1234677667633222222222211 001122
Q ss_pred eccccCccccccCCCCcccEEEccccccc
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHW 173 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHW 173 (385)
..+-|+...-..+.+.+|++++..+++.
T Consensus 130 -~~~~gd~~~~~~~~~~fD~I~~~~~~~~ 157 (212)
T PRK13942 130 -EVIVGDGTLGYEENAPYDRIYVTAAGPD 157 (212)
T ss_pred -EEEECCcccCCCcCCCcCEEEECCCccc
Confidence 2233455555567789999999887643
No 87
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=97.48 E-value=0.00038 Score=64.36 Aligned_cols=80 Identities=8% Similarity=-0.039 Sum_probs=45.0
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|..|..+. .. . -+++.-|.-.+....+-+.+... ...+
T Consensus 78 ~~~~VLeiG~GsG~~t~~la-~~-------~---------~~v~~vd~~~~~~~~a~~~~~~~-----------~~~~-- 127 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAAVLA-HL-------V---------RRVFSVERIKTLQWEAKRRLKQL-----------GLHN-- 127 (212)
T ss_pred CCCEEEEECCCccHHHHHHH-HH-------h---------CEEEEEeCCHHHHHHHHHHHHHC-----------CCCc--
Confidence 45799999999999987543 22 1 14566665433322222222210 0111
Q ss_pred eccccCccccccCCCCcccEEEcccccccc
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWL 174 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWL 174 (385)
+..+.+++.+.+.+.+++|++++..+++++
T Consensus 128 v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~ 157 (212)
T PRK00312 128 VSVRHGDGWKGWPAYAPFDRILVTAAAPEI 157 (212)
T ss_pred eEEEECCcccCCCcCCCcCEEEEccCchhh
Confidence 123444554444445899999998877664
No 88
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.47 E-value=0.001 Score=61.12 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=61.6
Q ss_pred CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644 64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY 143 (385)
Q Consensus 64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~ 143 (385)
+..-+++|+|||.|.+|..+. .+| -++.-.|....=-...-+.+... ..-.+
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA--------~rC---------d~LlavDis~~Al~~Ar~Rl~~~-----------~~V~~ 93 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLA--------PRC---------DRLLAVDISPRALARARERLAGL-----------PHVEW 93 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHG--------GGE---------EEEEEEES-HHHHHHHHHHTTT------------SSEEE
T ss_pred cccceeEecCCCccHHHHHHH--------Hhh---------CceEEEeCCHHHHHHHHHhcCCC-----------CCeEE
Confidence 356789999999999999886 333 34555555332222222223211 00011
Q ss_pred eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
-...+|. ..|++++|+++-|-.+++|+..+ |+..++..-.
T Consensus 94 ~~~dvp~-----~~P~~~FDLIV~SEVlYYL~~~~-----------------------------------~L~~~l~~l~ 133 (201)
T PF05401_consen 94 IQADVPE-----FWPEGRFDLIVLSEVLYYLDDAE-----------------------------------DLRAALDRLV 133 (201)
T ss_dssp EES-TTT--------SS-EEEEEEES-GGGSSSHH-----------------------------------HHHHHHHHHH
T ss_pred EECcCCC-----CCCCCCeeEEEEehHhHcCCCHH-----------------------------------HHHHHHHHHH
Confidence 2222333 35999999999999999997622 4566667788
Q ss_pred hhhccCCeEEEEec
Q 016644 224 KEMKRCGSMFLVCL 237 (385)
Q Consensus 224 ~EL~pGG~lvl~~~ 237 (385)
.-|.|||.||+.-.
T Consensus 134 ~~L~pgG~LV~g~~ 147 (201)
T PF05401_consen 134 AALAPGGHLVFGHA 147 (201)
T ss_dssp HTEEEEEEEEEEEE
T ss_pred HHhCCCCEEEEEEe
Confidence 99999999998664
No 89
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.46 E-value=0.0012 Score=62.19 Aligned_cols=102 Identities=22% Similarity=0.345 Sum_probs=70.0
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+.-+|+|+|+|+|..+..++ +++ |.++++.-|||.. +... .+ ..+
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~--------~~~-------P~l~~~v~Dlp~v--------~~~~-------~~---~~r-- 144 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALA--------RAY-------PNLRATVFDLPEV--------IEQA-------KE---ADR-- 144 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHH--------HHS-------TTSEEEEEE-HHH--------HCCH-------HH---TTT--
T ss_pred CccEEEeccCcchHHHHHHH--------HHC-------CCCcceeeccHhh--------hhcc-------cc---ccc--
Confidence 44689999999999888776 444 7899999999852 1100 00 112
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
+.-+||+|+ .=+|. .|+++-+..||=.++ +|-..+|+.-++
T Consensus 145 v~~~~gd~f-~~~P~--~D~~~l~~vLh~~~d------------------------------------~~~~~iL~~~~~ 185 (241)
T PF00891_consen 145 VEFVPGDFF-DPLPV--ADVYLLRHVLHDWSD------------------------------------EDCVKILRNAAA 185 (241)
T ss_dssp EEEEES-TT-TCCSS--ESEEEEESSGGGS-H------------------------------------HHHHHHHHHHHH
T ss_pred cccccccHH-hhhcc--ccceeeehhhhhcch------------------------------------HHHHHHHHHHHH
Confidence 235889999 55677 999999999984332 133467788899
Q ss_pred hhccC--CeEEEEeccCC
Q 016644 225 EMKRC--GSMFLVCLGRT 240 (385)
Q Consensus 225 EL~pG--G~lvl~~~g~~ 240 (385)
.|+|| |++++.=.-.+
T Consensus 186 al~pg~~g~llI~e~~~~ 203 (241)
T PF00891_consen 186 ALKPGKDGRLLIIEMVLP 203 (241)
T ss_dssp HSEECTTEEEEEEEEEEC
T ss_pred HhCCCCCCeEEEEeeccC
Confidence 99999 99988766554
No 90
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.46 E-value=0.0033 Score=58.70 Aligned_cols=152 Identities=11% Similarity=0.102 Sum_probs=87.5
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCch-hHhhhcCcCCce-
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSM-EECLASDTHRSY- 143 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~-~~~~~~~~~~~~- 143 (385)
.-+|+|+|||.|+|++.+.+ .-.+|+--|+...-...+++...-..... ....+......+
T Consensus 35 ~~rvLd~GCG~G~da~~LA~-----------------~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 97 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAE-----------------QGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIE 97 (213)
T ss_pred CCeEEEeCCCchhHHHHHHh-----------------CCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceE
Confidence 36999999999999998862 23788888887655554443211000000 000000001111
Q ss_pred eeccccCccccccC-CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSFYRRLF-PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR 222 (385)
Q Consensus 144 f~~~vpgSFy~rLf-P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R 222 (385)
|.. ++|++--. +...+|.++-..++| .+|+.. ...+++.-
T Consensus 98 ~~~---~D~~~~~~~~~~~fD~i~D~~~~~---~l~~~~---------------------------------R~~~~~~l 138 (213)
T TIGR03840 98 IFC---GDFFALTAADLGPVDAVYDRAALI---ALPEEM---------------------------------RQRYAAHL 138 (213)
T ss_pred EEE---ccCCCCCcccCCCcCEEEechhhc---cCCHHH---------------------------------HHHHHHHH
Confidence 222 24443211 135689999888887 344432 34456678
Q ss_pred HhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceE
Q 016644 223 SKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFV 302 (385)
Q Consensus 223 a~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~ 302 (385)
.+-|+|||++++..+..... . ..-|-|.-+++|+++.+.. .|+
T Consensus 139 ~~lLkpgG~~ll~~~~~~~~-------------~----------------------~~gpp~~~~~~eL~~~f~~--~~~ 181 (213)
T TIGR03840 139 LALLPPGARQLLITLDYDQS-------------E----------------------MAGPPFSVSPAEVEALYGG--HYE 181 (213)
T ss_pred HHHcCCCCeEEEEEEEcCCC-------------C----------------------CCCcCCCCCHHHHHHHhcC--Cce
Confidence 99999999977777655310 0 0014467888999888852 388
Q ss_pred ecEEEEEe
Q 016644 303 INKLEVFK 310 (385)
Q Consensus 303 i~~le~~~ 310 (385)
|+.++..+
T Consensus 182 i~~~~~~~ 189 (213)
T TIGR03840 182 IELLESRD 189 (213)
T ss_pred EEEEeecc
Confidence 77777544
No 91
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.42 E-value=0.0015 Score=64.67 Aligned_cols=83 Identities=12% Similarity=0.041 Sum_probs=47.5
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|.+++.+.. . ..+|+.-|+..+.....-+...... . . .......-|
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~--------~---------g~~V~gvD~S~~ml~~A~~~~~~~~--~-~--~~~~~~~~f 201 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL--------E---------GAIVSASDISAAMVAEAERRAKEAL--A-A--LPPEVLPKF 201 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH--------C---------CCEEEEEECCHHHHHHHHHHHHhcc--c-c--cccccceEE
Confidence 347999999999999887762 1 2478888887665544333222100 0 0 000011112
Q ss_pred eccccCccccccCCCCcccEEEccccccccc
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLS 175 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS 175 (385)
..+ +. +. .++++|+|+|+.++|++.
T Consensus 202 ~~~---Dl-~~--l~~~fD~Vv~~~vL~H~p 226 (315)
T PLN02585 202 EAN---DL-ES--LSGKYDTVTCLDVLIHYP 226 (315)
T ss_pred EEc---ch-hh--cCCCcCEEEEcCEEEecC
Confidence 222 21 22 268999999999987643
No 92
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.39 E-value=0.0044 Score=58.01 Aligned_cols=151 Identities=17% Similarity=0.182 Sum_probs=84.1
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhc--CCCCCCchhHhhhcCcCCce
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQL--LPPIGSSMEECLASDTHRSY 143 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~--l~~~~~~~~~~~~~~~~~~~ 143 (385)
.-+|+|.|||.|.|++.+.+ ...+|+--|+...=...+++. +......... .+......+
T Consensus 38 ~~rvL~~gCG~G~da~~LA~-----------------~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~-~~~~~~~~v 99 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAE-----------------QGHEVLGVELSELAVEQFFAENGLTPQTRQSGE-FEHYQAGEI 99 (218)
T ss_pred CCeEEEeCCCChHhHHHHHh-----------------CCCeEEEEccCHHHHHHHHHHcCCCcccccccc-ccccccCce
Confidence 46999999999999998862 236788888865444443331 1100000000 000000111
Q ss_pred -eeccccCccccccC-CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 -FAAGVPGSFYRRLF-PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA 221 (385)
Q Consensus 144 -f~~~vpgSFy~rLf-P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~ 221 (385)
+.. ++|++--. ....+|+++-..++|=| |+.. ...+++.
T Consensus 100 ~~~~---~D~~~l~~~~~~~fd~v~D~~~~~~l---~~~~---------------------------------R~~~~~~ 140 (218)
T PRK13255 100 TIYC---GDFFALTAADLADVDAVYDRAALIAL---PEEM---------------------------------RERYVQQ 140 (218)
T ss_pred EEEE---CcccCCCcccCCCeeEEEehHhHhhC---CHHH---------------------------------HHHHHHH
Confidence 111 24443211 12478888888888843 4332 3345566
Q ss_pred HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644 222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF 301 (385)
Q Consensus 222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF 301 (385)
-++-|+|||++++..+..... . . . -|-|.-+++|+++.+. +.|
T Consensus 141 l~~lL~pgG~~~l~~~~~~~~-------------~-~---------~------------gPp~~~~~~el~~~~~--~~~ 183 (218)
T PRK13255 141 LAALLPAGCRGLLVTLDYPQE-------------E-L---------A------------GPPFSVSDEEVEALYA--GCF 183 (218)
T ss_pred HHHHcCCCCeEEEEEEEeCCc-------------c-C---------C------------CCCCCCCHHHHHHHhc--CCc
Confidence 889999999866655443210 0 0 1 2556789999999885 238
Q ss_pred EecEEEEEe
Q 016644 302 VINKLEVFK 310 (385)
Q Consensus 302 ~i~~le~~~ 310 (385)
+|+.++..+
T Consensus 184 ~i~~~~~~~ 192 (218)
T PRK13255 184 EIELLERQD 192 (218)
T ss_pred eEEEeeecc
Confidence 888777654
No 93
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=97.36 E-value=0.00072 Score=65.68 Aligned_cols=127 Identities=13% Similarity=0.098 Sum_probs=67.0
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA 146 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~ 146 (385)
.+|+|+|||+|..++.+.... |..+|+..|+-..-....-++.... .-..++ .
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~---------------~~~~v~avDis~~al~~a~~n~~~~----------~~~~~v--~ 168 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEF---------------PNAEVIAVDISPDALAVAEENAEKN----------QLEHRV--E 168 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHHHHc----------CCCCcE--E
Confidence 689999999999888776322 4578899998443332222222110 000111 1
Q ss_pred cccCccccccCCCCcccEEEcccccccccCC---chhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 147 GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQV---PESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 147 ~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~---P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
.+.+++++. ++.+++|+++|+--..--+.. |..+......++-.| .-.-.+...|+..-.
T Consensus 169 ~~~~d~~~~-~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg----------------~dgl~~~~~ii~~a~ 231 (284)
T TIGR00536 169 FIQSNLFEP-LAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGG----------------DDGLNILRQIIELAP 231 (284)
T ss_pred EEECchhcc-CcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCC----------------CcHHHHHHHHHHHHH
Confidence 233466654 355689999996322111110 111000000000000 011235667778888
Q ss_pred hhhccCCeEEEEec
Q 016644 224 KEMKRCGSMFLVCL 237 (385)
Q Consensus 224 ~EL~pGG~lvl~~~ 237 (385)
+-|+|||+|++.+.
T Consensus 232 ~~L~~gG~l~~e~g 245 (284)
T TIGR00536 232 DYLKPNGFLVCEIG 245 (284)
T ss_pred HhccCCCEEEEEEC
Confidence 99999999988874
No 94
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.35 E-value=0.00084 Score=66.10 Aligned_cols=74 Identities=14% Similarity=0.168 Sum_probs=44.7
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA 146 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~ 146 (385)
.+|+|+|||+|..++.+... + |..+|+..|+-..-....-+++... +-..++ .
T Consensus 135 ~~VLDlG~GsG~iai~la~~--------~-------p~~~V~avDis~~al~~A~~n~~~~----------~l~~~i--~ 187 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYA--------F-------PDAEVDAVDISPDALAVAEINIERH----------GLEDRV--T 187 (307)
T ss_pred CEEEEEechhhHHHHHHHHH--------C-------CCCEEEEEeCCHHHHHHHHHHHHHh----------CCCCcE--E
Confidence 68999999999988877532 2 5678999998543333332322110 000112 1
Q ss_pred cccCccccccCCCCcccEEEcc
Q 016644 147 GVPGSFYRRLFPTRSIDFFHSA 168 (385)
Q Consensus 147 ~vpgSFy~rLfP~~Svd~~~Ss 168 (385)
.+-+++.+.+ |++++|+++|+
T Consensus 188 ~~~~D~~~~l-~~~~fDlIvsN 208 (307)
T PRK11805 188 LIESDLFAAL-PGRRYDLIVSN 208 (307)
T ss_pred EEECchhhhC-CCCCccEEEEC
Confidence 2334655543 66789999997
No 95
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.32 E-value=0.00031 Score=72.42 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=37.7
Q ss_pred cccc-CCCCcccEEEcccccc-cccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 016644 153 YRRL-FPTRSIDFFHSAFSLH-WLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCG 230 (385)
Q Consensus 153 y~rL-fP~~Svd~~~Ss~alH-WLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG 230 (385)
-.|| ||++++|++||+-|+- |.+.---.+. ---+-|+|||
T Consensus 172 s~rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~--------------------------------------evdRvLRpGG 213 (506)
T PF03141_consen 172 SQRLPFPSNAFDMVHCSRCLIPWHPNDGFLLF--------------------------------------EVDRVLRPGG 213 (506)
T ss_pred cccccCCccchhhhhcccccccchhcccceee--------------------------------------hhhhhhccCc
Confidence 3788 9999999999999875 8665422222 2468899999
Q ss_pred eEEEEeccCC
Q 016644 231 SMFLVCLGRT 240 (385)
Q Consensus 231 ~lvl~~~g~~ 240 (385)
.++++..-..
T Consensus 214 yfv~S~ppv~ 223 (506)
T PF03141_consen 214 YFVLSGPPVY 223 (506)
T ss_pred eEEecCCccc
Confidence 9999886543
No 96
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.30 E-value=0.0022 Score=58.76 Aligned_cols=148 Identities=15% Similarity=0.260 Sum_probs=92.4
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
-.+|+|+|||.|.+-..+. +. ..++.+--++ |-..+.+.+.. . +
T Consensus 14 gsrVLDLGCGdG~LL~~L~--------~~--------k~v~g~GvEi---d~~~v~~cv~r-------------G----v 57 (193)
T PF07021_consen 14 GSRVLDLGCGDGELLAYLK--------DE--------KQVDGYGVEI---DPDNVAACVAR-------------G----V 57 (193)
T ss_pred CCEEEecCCCchHHHHHHH--------Hh--------cCCeEEEEec---CHHHHHHHHHc-------------C----C
Confidence 4899999999998433332 21 1344454443 33333332221 0 1
Q ss_pred ccccCcccccc--CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 146 AGVPGSFYRRL--FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 146 ~~vpgSFy~rL--fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
..+-++--+-| ||++|+|.|+-|-+||=+.+ |..+. .
T Consensus 58 ~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~-P~~vL----------------------------------------~ 96 (193)
T PF07021_consen 58 SVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR-PDEVL----------------------------------------E 96 (193)
T ss_pred CEEECCHHHhHhhCCCCCccEEehHhHHHhHhH-HHHHH----------------------------------------H
Confidence 13444544555 89999999999999999866 55542 2
Q ss_pred hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccccc------ccCCHHHHHHHHHh
Q 016644 224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPV------YASSLQEFKEVVEA 297 (385)
Q Consensus 224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~------y~ps~~Ev~~~le~ 297 (385)
+-|+-|.+.+++|+.-+ +| ..-..+.-.|..+..+ .+..+| ++-|..++.+..++
T Consensus 97 EmlRVgr~~IVsFPNFg-------------~W----~~R~~l~~~GrmPvt~--~lPy~WYdTPNih~~Ti~DFe~lc~~ 157 (193)
T PF07021_consen 97 EMLRVGRRAIVSFPNFG-------------HW----RNRLQLLLRGRMPVTK--ALPYEWYDTPNIHLCTIKDFEDLCRE 157 (193)
T ss_pred HHHHhcCeEEEEecChH-------------HH----HHHHHHHhcCCCCCCC--CCCCcccCCCCcccccHHHHHHHHHH
Confidence 44677889998885431 22 2223344566665443 233333 46799999999999
Q ss_pred cCceEecEEEEEe
Q 016644 298 NGSFVINKLEVFK 310 (385)
Q Consensus 298 ~gsF~i~~le~~~ 310 (385)
.| ++|.+-..+.
T Consensus 158 ~~-i~I~~~~~~~ 169 (193)
T PF07021_consen 158 LG-IRIEERVFLD 169 (193)
T ss_pred CC-CEEEEEEEEc
Confidence 99 8888877775
No 97
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.21 E-value=0.0013 Score=69.07 Aligned_cols=130 Identities=12% Similarity=0.173 Sum_probs=69.4
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..++.+.... |..+|+.-|+...-....-++.... +-...+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~---------------p~~~v~avDis~~al~~A~~N~~~~----------~l~~~v-- 191 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCEL---------------PNANVIATDISLDAIEVAKSNAIKY----------EVTDRI-- 191 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHC---------------CCCeEEEEECCHHHHHHHHHHHHHc----------CCccce--
Confidence 4689999999999998776322 5678999998532222222221100 000111
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHH-HHHHHHHHHHHHHHHh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYK-KQFQTDLAAFLGARSK 224 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~-~q~~~D~~~FL~~Ra~ 224 (385)
..+-+++++. ++.+++|+++|+--....+..+....+. ..+ .| ..+.+. ..--..+..++..-.+
T Consensus 192 ~~~~~D~~~~-~~~~~fDlIvsNPPYi~~~~~~~l~~~v--~~~----------EP-~~AL~gg~dGl~~~~~il~~a~~ 257 (506)
T PRK01544 192 QIIHSNWFEN-IEKQKFDFIVSNPPYISHSEKSEMAIET--INY----------EP-SIALFAEEDGLQAYFIIAENAKQ 257 (506)
T ss_pred eeeecchhhh-CcCCCccEEEECCCCCCchhhhhcCchh--hcc----------Cc-HHHhcCCccHHHHHHHHHHHHHH
Confidence 1234566554 3667899999975443333322110000 000 00 000010 0112335667777888
Q ss_pred hhccCCeEEEEe
Q 016644 225 EMKRCGSMFLVC 236 (385)
Q Consensus 225 EL~pGG~lvl~~ 236 (385)
-|+|||++++..
T Consensus 258 ~L~~gG~l~lEi 269 (506)
T PRK01544 258 FLKPNGKIILEI 269 (506)
T ss_pred hccCCCEEEEEE
Confidence 999999999875
No 98
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.18 E-value=0.002 Score=61.64 Aligned_cols=127 Identities=14% Similarity=0.162 Sum_probs=67.1
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|+|||+|..++.+.... |..+++..|.-..-...+-+.+.. ....++
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~---------------~~~~v~~iDis~~~l~~a~~n~~~-----------~~~~~i- 160 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKER---------------PDAEVTAVDISPEALAVARRNAKH-----------GLGARV- 160 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHHHh-----------CCCCcE-
Confidence 45789999999999888776322 457889999854433333332210 001111
Q ss_pred eccccCccccccCCCCcccEEEcccccc---cccCCchhhhc-ccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLH---WLSQVPESALD-KRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG 220 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alH---WLS~~P~~l~~-~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~ 220 (385)
..+-++++.. ++++++|+++|+--.. -+...++.+.+ ....++..| ...-+++..|+.
T Consensus 161 -~~~~~d~~~~-~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g----------------~~g~~~~~~~~~ 222 (275)
T PRK09328 161 -EFLQGDWFEP-LPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGG----------------EDGLDFYRRIIE 222 (275)
T ss_pred -EEEEccccCc-CCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCC----------------CCHHHHHHHHHH
Confidence 1122354433 3468999999862210 00001111100 000000000 112345677888
Q ss_pred HHHhhhccCCeEEEEe
Q 016644 221 ARSKEMKRCGSMFLVC 236 (385)
Q Consensus 221 ~Ra~EL~pGG~lvl~~ 236 (385)
.-.+-|+|||++++..
T Consensus 223 ~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 223 QAPRYLKPGGWLLLEI 238 (275)
T ss_pred HHHHhcccCCEEEEEE
Confidence 8889999999999865
No 99
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.07 E-value=0.0028 Score=65.19 Aligned_cols=124 Identities=11% Similarity=0.113 Sum_probs=69.2
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|.-|+.+.+.. +...|+..|+-......+-+.+... .....++
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~---------------~~~~v~a~D~s~~~l~~~~~n~~~~-----------g~~~~~~ 298 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELA---------------PQAQVVALDIDAQRLERVRENLQRL-----------GLKATVI 298 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHc---------------CCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCeEEE
Confidence 4689999999999998776332 2257888888554444443333211 0111122
Q ss_pred ccccCccc--cccCCCCcccEEEccc---ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644 146 AGVPGSFY--RRLFPTRSIDFFHSAF---SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG 220 (385)
Q Consensus 146 ~~vpgSFy--~rLfP~~Svd~~~Ss~---alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~ 220 (385)
. ++.. ...++.+++|.|++.. ...-+.+.|.... . .+++-. ..+.+....+|.
T Consensus 299 ~---~D~~~~~~~~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~-------~--------~~~~~l----~~l~~~q~~iL~ 356 (427)
T PRK10901 299 V---GDARDPAQWWDGQPFDRILLDAPCSATGVIRRHPDIKW-------L--------RRPEDI----AALAALQSEILD 356 (427)
T ss_pred E---cCcccchhhcccCCCCEEEECCCCCcccccccCccccc-------c--------CCHHHH----HHHHHHHHHHHH
Confidence 2 2322 2234578899998422 1212223333210 0 012111 233345567888
Q ss_pred HHHhhhccCCeEEEEec
Q 016644 221 ARSKEMKRCGSMFLVCL 237 (385)
Q Consensus 221 ~Ra~EL~pGG~lvl~~~ 237 (385)
.-++-|+|||+|+.++.
T Consensus 357 ~a~~~LkpGG~lvystc 373 (427)
T PRK10901 357 ALWPLLKPGGTLLYATC 373 (427)
T ss_pred HHHHhcCCCCEEEEEeC
Confidence 88899999999998774
No 100
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=96.94 E-value=0.0034 Score=64.12 Aligned_cols=73 Identities=18% Similarity=0.127 Sum_probs=44.6
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA 146 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~ 146 (385)
.+|+|+|||+|..++.+... . |..+++..|+-.......-++... ... ++ .
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~--------~-------p~a~VtAVDiS~~ALe~AreNa~~-----------~g~-rV--~ 303 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALE--------R-------PDAFVRASDISPPALETARKNAAD-----------LGA-RV--E 303 (423)
T ss_pred CEEEEEeChhhHHHHHHHHh--------C-------CCCEEEEEECCHHHHHHHHHHHHH-----------cCC-cE--E
Confidence 48999999999999877522 1 567888889854333333222211 011 12 1
Q ss_pred cccCccccccCC-CCcccEEEcc
Q 016644 147 GVPGSFYRRLFP-TRSIDFFHSA 168 (385)
Q Consensus 147 ~vpgSFy~rLfP-~~Svd~~~Ss 168 (385)
.+-+++.+..+| .+++|+++|+
T Consensus 304 fi~gDl~e~~l~~~~~FDLIVSN 326 (423)
T PRK14966 304 FAHGSWFDTDMPSEGKWDIIVSN 326 (423)
T ss_pred EEEcchhccccccCCCccEEEEC
Confidence 233576655444 4689999996
No 101
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=96.94 E-value=0.0014 Score=63.81 Aligned_cols=103 Identities=11% Similarity=-0.007 Sum_probs=57.7
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..++.+. +. ..-+|+.-|+-.......-+++... .-...+..
T Consensus 160 g~~VLDvGcGsG~lai~aa--------~~--------g~~~V~avDid~~al~~a~~n~~~n----------~~~~~~~~ 213 (288)
T TIGR00406 160 DKNVIDVGCGSGILSIAAL--------KL--------GAAKVVGIDIDPLAVESARKNAELN----------QVSDRLQV 213 (288)
T ss_pred CCEEEEeCCChhHHHHHHH--------Hc--------CCCeEEEEECCHHHHHHHHHHHHHc----------CCCcceEE
Confidence 3789999999998876543 11 1247888887544333322222110 00011111
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
. -++ ..-++++++|+++++...+++ ..++..-.+-
T Consensus 214 ~--~~~--~~~~~~~~fDlVvan~~~~~l-----------------------------------------~~ll~~~~~~ 248 (288)
T TIGR00406 214 K--LIY--LEQPIEGKADVIVANILAEVI-----------------------------------------KELYPQFSRL 248 (288)
T ss_pred E--ecc--cccccCCCceEEEEecCHHHH-----------------------------------------HHHHHHHHHH
Confidence 0 011 112456799999997643322 2234445788
Q ss_pred hccCCeEEEEeccC
Q 016644 226 MKRCGSMFLVCLGR 239 (385)
Q Consensus 226 L~pGG~lvl~~~g~ 239 (385)
|+|||+|+++....
T Consensus 249 LkpgG~li~sgi~~ 262 (288)
T TIGR00406 249 VKPGGWLILSGILE 262 (288)
T ss_pred cCCCcEEEEEeCcH
Confidence 99999999887654
No 102
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=96.93 E-value=0.0023 Score=52.81 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=64.0
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHH-H-HhcCCCCCCchhHhhhcCcCCcee
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNT-L-FQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~-l-F~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
.+|+|+|||+|..++.+... . ..+++..|+ |.+.. + ...++.. .. ..+.-+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~--------~--------~~~~~gvdi--~~~~~~~a~~~~~~~--------~~-~~~~~~ 54 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRR--------G--------AARVTGVDI--DPEAVELARRNLPRN--------GL-DDRVEV 54 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHH--------C--------TCEEEEEES--SHHHHHHHHHHCHHC--------TT-TTTEEE
T ss_pred CEEEEcCcchHHHHHHHHHH--------C--------CCeEEEEEE--CHHHHHHHHHHHHHc--------cC-CceEEE
Confidence 58999999999977777632 1 368888888 44332 2 2223210 00 011112
Q ss_pred eccccCccccc--cCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRR--LFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR 222 (385)
Q Consensus 145 ~~~vpgSFy~r--LfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R 222 (385)
+.+ ++..- .++++++|+++++-=.+.....+... .++...|++.-
T Consensus 55 ~~~---D~~~~~~~~~~~~~D~Iv~npP~~~~~~~~~~~------------------------------~~~~~~~~~~~ 101 (117)
T PF13659_consen 55 IVG---DARDLPEPLPDGKFDLIVTNPPYGPRSGDKAAL------------------------------RRLYSRFLEAA 101 (117)
T ss_dssp EES---HHHHHHHTCTTT-EEEEEE--STTSBTT----G------------------------------GCHHHHHHHHH
T ss_pred EEC---chhhchhhccCceeEEEEECCCCccccccchhh------------------------------HHHHHHHHHHH
Confidence 222 44333 37899999999975543322111111 11567888999
Q ss_pred HhhhccCCeEEEEec
Q 016644 223 SKEMKRCGSMFLVCL 237 (385)
Q Consensus 223 a~EL~pGG~lvl~~~ 237 (385)
.+-|+|||++++.+.
T Consensus 102 ~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 102 ARLLKPGGVLVFITP 116 (117)
T ss_dssp HHHEEEEEEEEEEEE
T ss_pred HHHcCCCeEEEEEeC
Confidence 999999999998764
No 103
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.86 E-value=0.018 Score=57.15 Aligned_cols=195 Identities=18% Similarity=0.216 Sum_probs=111.5
Q ss_pred hhc-ccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHH
Q 016644 18 ILS-MKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYE 96 (385)
Q Consensus 18 ~~~-m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~ 96 (385)
+.+ |.||-+..+|.-+-.+|+.. .....++.+.+...+.. | ...-..+|.|-|.|..+-.+++ .+
T Consensus 134 ~~G~~l~~~~~~~~~~~~~~~~sm-~~l~~~~~~~il~~~~G-f---~~v~~avDvGgGiG~v~k~ll~--------~f- 199 (342)
T KOG3178|consen 134 AHGMMLGGYGGADERFSKDFNGSM-SFLSTLVMKKILEVYTG-F---KGVNVAVDVGGGIGRVLKNLLS--------KY- 199 (342)
T ss_pred ccchhhhhhcccccccHHHHHHHH-HHHHHHHHHhhhhhhcc-c---ccCceEEEcCCcHhHHHHHHHH--------hC-
Confidence 556 56665555554444444433 33333333333222221 2 2356789999999998888774 23
Q ss_pred hcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccC
Q 016644 97 ASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQ 176 (385)
Q Consensus 97 ~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~ 176 (385)
|.+..+==|||. +-+.-+.. . +. +-=|.|.+++. .|.+- ++|--+.||=+.+
T Consensus 200 ------p~ik~infdlp~-----v~~~a~~~--------~----~g--V~~v~gdmfq~-~P~~d--aI~mkWiLhdwtD 251 (342)
T KOG3178|consen 200 ------PHIKGINFDLPF-----VLAAAPYL--------A----PG--VEHVAGDMFQD-TPKGD--AIWMKWILHDWTD 251 (342)
T ss_pred ------CCCceeecCHHH-----HHhhhhhh--------c----CC--cceeccccccc-CCCcC--eEEEEeecccCCh
Confidence 667777556653 22211110 0 00 33467788988 88887 8887777773322
Q ss_pred CchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHH
Q 016644 177 VPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGT 256 (385)
Q Consensus 177 ~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~ 256 (385)
+|+..||+++++-|+|||.+++.=.--+...+..+......+
T Consensus 252 ------------------------------------edcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~-- 293 (342)
T KOG3178|consen 252 ------------------------------------EDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTR-- 293 (342)
T ss_pred ------------------------------------HHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceee--
Confidence 478899999999999999998765432221111110001111
Q ss_pred HHHHHHHHHHHc-CCcccccccccccccccCCHHHHHHHHHhcCceEecEEEE
Q 016644 257 HFQDAWNDLVQE-GLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLEV 308 (385)
Q Consensus 257 ~l~~al~~mv~e-G~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le~ 308 (385)
-.+.++-...+ |+ -++..|++..+.++| |.+-..-.
T Consensus 294 -~~d~lm~~~~~~Gk--------------ert~~e~q~l~~~~g-F~~~~~~~ 330 (342)
T KOG3178|consen 294 -DMDLLMLTQTSGGK--------------ERTLKEFQALLPEEG-FPVCMVAL 330 (342)
T ss_pred -hhHHHHHHHhccce--------------eccHHHHHhcchhhc-CceeEEEe
Confidence 12222322233 32 378999999999999 87655443
No 104
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=96.81 E-value=0.0067 Score=62.35 Aligned_cols=128 Identities=12% Similarity=0.091 Sum_probs=74.6
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|.-|+.+...+ +.-+|+..|.-.+-...+-+++... ... +-+
T Consensus 239 g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~~l~~~~~n~~r~-----------g~~-~~v 291 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEHRLKRVYENLKRL-----------GLT-IKA 291 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHHHHHHHHHHHHHc-----------CCC-eEE
Confidence 4689999999999999876322 2357899998665555554444321 011 111
Q ss_pred ccccCcccc--ccCCCCcccEEEc---ccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644 146 AGVPGSFYR--RLFPTRSIDFFHS---AFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG 220 (385)
Q Consensus 146 ~~vpgSFy~--rLfP~~Svd~~~S---s~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~ 220 (385)
..+.++-.+ ...+.+++|.|++ .+++.-+.+.|..... .+++.. .+..+.-..+|.
T Consensus 292 ~~~~~d~~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~---------------~~~~~~----~~l~~lQ~~lL~ 352 (426)
T TIGR00563 292 ETKDGDGRGPSQWAENEQFDRILLDAPCSATGVIRRHPDIKWL---------------RKPRDI----AELAELQSEILD 352 (426)
T ss_pred EEeccccccccccccccccCEEEEcCCCCCCcccccCcchhhc---------------CCHHHH----HHHHHHHHHHHH
Confidence 112223221 1236788999986 2444445555554210 122211 223334467788
Q ss_pred HHHhhhccCCeEEEEeccC
Q 016644 221 ARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 221 ~Ra~EL~pGG~lvl~~~g~ 239 (385)
.-++-|+|||+||.++..-
T Consensus 353 ~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 353 AIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred HHHHhcCCCcEEEEEeCCC
Confidence 8889999999999887554
No 105
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.81 E-value=0.0034 Score=58.23 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=27.2
Q ss_pred CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEE
Q 016644 157 FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLV 235 (385)
Q Consensus 157 fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~ 235 (385)
++++|+|+++..-||.= .||..||.--.+-|||||.|.+.
T Consensus 118 L~~~svDv~VfcLSLMG---------------------------------------Tn~~~fi~EA~RvLK~~G~L~IA 157 (219)
T PF05148_consen 118 LEDESVDVAVFCLSLMG---------------------------------------TNWPDFIREANRVLKPGGILKIA 157 (219)
T ss_dssp --TT-EEEEEEES---S---------------------------------------S-HHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCceeEEEEEhhhhC---------------------------------------CCcHHHHHHHHheeccCcEEEEE
Confidence 68999999988877642 15777888889999999999664
No 106
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.78 E-value=0.0029 Score=60.20 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.1
Q ss_pred CceEEeeeCCCCCcchHHH
Q 016644 65 IPFALADLGCSCGNNTLYI 83 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~ 83 (385)
+..+|+|+|||+|..++.+
T Consensus 119 ~~~~VLDiGcGsG~l~i~~ 137 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAA 137 (250)
T ss_pred CCCEEEEeCCcHHHHHHHH
Confidence 3578999999999876644
No 107
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=96.77 E-value=0.014 Score=53.44 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=26.1
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS 114 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~ 114 (385)
...+|+|+|||+|..++.+.... .+..+|+.-|+-.
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~--------------~~~~~v~avD~~~ 75 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLV--------------GETGKVYAVDKDE 75 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHh--------------CCCCEEEEEECCH
Confidence 34789999999999888765221 1346888888843
No 108
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=96.66 E-value=0.0057 Score=56.60 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=90.6
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc--e
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS--Y 143 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~--~ 143 (385)
-.-++++|||||+|=-..- ..|--.|.+-|=..|+=.-+-++... .++.+ +
T Consensus 77 K~~vLEvgcGtG~Nfkfy~----------------~~p~~svt~lDpn~~mee~~~ks~~E-----------~k~~~~~~ 129 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYP----------------WKPINSVTCLDPNEKMEEIADKSAAE-----------KKPLQVER 129 (252)
T ss_pred ccceEEecccCCCCccccc----------------CCCCceEEEeCCcHHHHHHHHHHHhh-----------ccCcceEE
Confidence 3567999999999953220 12567888888544433333333221 12222 4
Q ss_pred eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
|+.|-+-+ .-|| ++.|+|.|++..+|-=..++-.. |+.-.
T Consensus 130 fvva~ge~-l~~l-~d~s~DtVV~TlvLCSve~~~k~--------------------------------------L~e~~ 169 (252)
T KOG4300|consen 130 FVVADGEN-LPQL-ADGSYDTVVCTLVLCSVEDPVKQ--------------------------------------LNEVR 169 (252)
T ss_pred EEeechhc-Cccc-ccCCeeeEEEEEEEeccCCHHHH--------------------------------------HHHHH
Confidence 67664444 3333 99999999998877543332222 34467
Q ss_pred hhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHc--CCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644 224 KEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQE--GLITGEKRDSFNIPVYASSLQEFKEVVEANGSF 301 (385)
Q Consensus 224 ~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~e--G~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF 301 (385)
+-|+|||++++.=-|++.. ..+...|++.++. -++ -+-+.=-.|.-+.|+++. |
T Consensus 170 rlLRpgG~iifiEHva~~y-------------~~~n~i~q~v~ep~~~~~----------~dGC~ltrd~~e~Leda~-f 225 (252)
T KOG4300|consen 170 RLLRPGGRIIFIEHVAGEY-------------GFWNRILQQVAEPLWHLE----------SDGCVLTRDTGELLEDAE-F 225 (252)
T ss_pred HhcCCCcEEEEEecccccc-------------hHHHHHHHHHhchhhhee----------ccceEEehhHHHHhhhcc-c
Confidence 8999999999988877421 1133334333221 111 111222345555677665 8
Q ss_pred EecEEEEEeCCCCC
Q 016644 302 VINKLEVFKGGSPL 315 (385)
Q Consensus 302 ~i~~le~~~~~~~~ 315 (385)
++...+.+..++.+
T Consensus 226 ~~~~~kr~~~~ttw 239 (252)
T KOG4300|consen 226 SIDSCKRFNFGTTW 239 (252)
T ss_pred ccchhhcccCCceE
Confidence 88888887655443
No 109
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=96.63 E-value=0.036 Score=50.59 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=26.8
Q ss_pred HHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCC
Q 016644 218 FLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGL 270 (385)
Q Consensus 218 FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~ 270 (385)
.|.....-|+|||++|+...-. +.+..++..|.+.|.
T Consensus 117 ile~~~~~l~~ggrlV~naitl----------------E~~~~a~~~~~~~g~ 153 (187)
T COG2242 117 ILEAAWERLKPGGRLVANAITL----------------ETLAKALEALEQLGG 153 (187)
T ss_pred HHHHHHHHcCcCCeEEEEeecH----------------HHHHHHHHHHHHcCC
Confidence 3455678899999999887332 557777777777664
No 110
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=96.62 E-value=0.019 Score=54.79 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=26.4
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS 114 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~ 114 (385)
+.+|+|+|||+|..++.+.... |..+|+..|+-.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~---------------~~~~v~~vDis~ 120 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAAL---------------DGIELHAADIDP 120 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhC---------------CCCEEEEEECCH
Confidence 4689999999999998886332 456888888843
No 111
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=96.52 E-value=0.0031 Score=61.63 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHH
Q 016644 42 QSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 42 ~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~ 84 (385)
..++.+|++.. .+..+++|+|||||-.|+...
T Consensus 150 ~lcL~~Le~~~-----------~~g~~vlDvGcGSGILaIAa~ 181 (300)
T COG2264 150 SLCLEALEKLL-----------KKGKTVLDVGCGSGILAIAAA 181 (300)
T ss_pred HHHHHHHHHhh-----------cCCCEEEEecCChhHHHHHHH
Confidence 34566666644 256899999999999998775
No 112
>PRK00811 spermidine synthase; Provisional
Probab=96.47 E-value=0.0081 Score=58.42 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=64.8
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY- 143 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~- 143 (385)
++-+|+|+|||+|..+..+++ + ++.-+|...|+-..--...-+.++...... .+ .+++
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~--------~-------~~~~~V~~VEid~~vv~~a~~~~~~~~~~~-----~~-d~rv~ 134 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLK--------H-------PSVEKITLVEIDERVVEVCRKYLPEIAGGA-----YD-DPRVE 134 (283)
T ss_pred CCCEEEEEecCchHHHHHHHc--------C-------CCCCEEEEEeCCHHHHHHHHHHhHHhcccc-----cc-CCceE
Confidence 567899999999998776651 1 123478888885433333322232110000 00 1222
Q ss_pred eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
++.+-+..|-.+ +++++|+|++-.+-+|. .+..+ |. ..|++...
T Consensus 135 v~~~Da~~~l~~--~~~~yDvIi~D~~dp~~--~~~~l-------------------------~t-------~ef~~~~~ 178 (283)
T PRK00811 135 LVIGDGIKFVAE--TENSFDVIIVDSTDPVG--PAEGL-------------------------FT-------KEFYENCK 178 (283)
T ss_pred EEECchHHHHhh--CCCcccEEEECCCCCCC--chhhh-------------------------hH-------HHHHHHHH
Confidence 333433343333 57899999997665551 11111 11 35667778
Q ss_pred hhhccCCeEEEEe
Q 016644 224 KEMKRCGSMFLVC 236 (385)
Q Consensus 224 ~EL~pGG~lvl~~ 236 (385)
+-|+|||.|++..
T Consensus 179 ~~L~~gGvlv~~~ 191 (283)
T PRK00811 179 RALKEDGIFVAQS 191 (283)
T ss_pred HhcCCCcEEEEeC
Confidence 9999999998653
No 113
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=96.43 E-value=0.013 Score=60.34 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=76.0
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F 144 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f 144 (385)
..+|+|+|||+|.-|+.+.... .+.-+|+..|+-.+-...+-+.+... ...++ +
T Consensus 238 g~~VLD~cagpGgkt~~la~~~--------------~~~g~V~a~Dis~~rl~~~~~n~~r~-----------g~~~v~~ 292 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELM--------------KDQGKILAVDISREKIQLVEKHAKRL-----------KLSSIEI 292 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHc--------------CCCCEEEEEECCHHHHHHHHHHHHHc-----------CCCeEEE
Confidence 3689999999999998886322 13468999999655544443333211 01111 2
Q ss_pred eccccCcccccc--CCCCcccEEEc---ccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRRL--FPTRSIDFFHS---AFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL 219 (385)
Q Consensus 145 ~~~vpgSFy~rL--fP~~Svd~~~S---s~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL 219 (385)
..+ +. ..+ +.++++|.|+. .+.+..+.+.|..... .+++ -..+..+.-..+|
T Consensus 293 ~~~---Da-~~l~~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~---------------~~~~----~~~~l~~~Q~~iL 349 (431)
T PRK14903 293 KIA---DA-ERLTEYVQDTFDRILVDAPCTSLGTARNHPEVLRR---------------VNKE----DFKKLSEIQLRIV 349 (431)
T ss_pred EEC---ch-hhhhhhhhccCCEEEECCCCCCCccccCChHHHHh---------------CCHH----HHHHHHHHHHHHH
Confidence 222 21 111 23568999986 3456666666655321 1122 1233445557788
Q ss_pred HHHHhhhccCCeEEEEeccC
Q 016644 220 GARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 220 ~~Ra~EL~pGG~lvl~~~g~ 239 (385)
..-++-|+|||+||.++-..
T Consensus 350 ~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 350 SQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred HHHHHhcCCCCEEEEEECCC
Confidence 88999999999999888654
No 114
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.39 E-value=0.0049 Score=57.53 Aligned_cols=144 Identities=19% Similarity=0.269 Sum_probs=80.6
Q ss_pred CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCce-eEEecCCCCCchHHHHh-cCCCCCCchhHhhhcCcCC
Q 016644 64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEF-SAFFSDLPSNDFNTLFQ-LLPPIGSSMEECLASDTHR 141 (385)
Q Consensus 64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~-qv~~nDLp~NDFn~lF~-~l~~~~~~~~~~~~~~~~~ 141 (385)
.+..+.+|.|||-|+-|-.++. |-+ +|-+.|. .--|-.-.+ .+.. ...+..
T Consensus 54 ~~~~~alDcGAGIGRVTk~lLl-----------------~~f~~VDlVEp-~~~Fl~~a~~~l~~---------~~~~v~ 106 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRVTKGLLL-----------------PVFDEVDLVEP-VEKFLEQAKEYLGK---------DNPRVG 106 (218)
T ss_dssp ---SEEEEET-TTTHHHHHTCC-----------------CC-SEEEEEES--HHHHHHHHHHTCC---------GGCCEE
T ss_pred CCcceEEecccccchhHHHHHH-----------------HhcCEeEEecc-CHHHHHHHHHHhcc---------cCCCcc
Confidence 3568899999999998876641 212 2223332 113322222 2221 012234
Q ss_pred ceeeccccCccccccCCC-CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644 142 SYFAAGVPGSFYRRLFPT-RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG 220 (385)
Q Consensus 142 ~~f~~~vpgSFy~rLfP~-~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~ 220 (385)
.+|.+| .+..-|+ ++.|+||.-|++..|++ +||..||+
T Consensus 107 ~~~~~g-----LQ~f~P~~~~YDlIW~QW~lghLTD------------------------------------~dlv~fL~ 145 (218)
T PF05891_consen 107 EFYCVG-----LQDFTPEEGKYDLIWIQWCLGHLTD------------------------------------EDLVAFLK 145 (218)
T ss_dssp EEEES------GGG----TT-EEEEEEES-GGGS-H------------------------------------HHHHHHHH
T ss_pred eEEecC-----HhhccCCCCcEeEEEehHhhccCCH------------------------------------HHHHHHHH
Confidence 567666 5666676 79999999888877755 48999999
Q ss_pred HHHhhhccCCeEEEE-eccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcC
Q 016644 221 ARSKEMKRCGSMFLV-CLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANG 299 (385)
Q Consensus 221 ~Ra~EL~pGG~lvl~-~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~g 299 (385)
...+.|+|||.+|+= +..... . ..++++ | -...||.+.++.+++++|
T Consensus 146 RCk~~L~~~G~IvvKEN~~~~~----------~----------------~~~D~~--D----sSvTRs~~~~~~lF~~AG 193 (218)
T PF05891_consen 146 RCKQALKPNGVIVVKENVSSSG----------F----------------DEFDEE--D----SSVTRSDEHFRELFKQAG 193 (218)
T ss_dssp HHHHHEEEEEEEEEEEEEESSS----------E----------------EEEETT--T----TEEEEEHHHHHHHHHHCT
T ss_pred HHHHhCcCCcEEEEEecCCCCC----------C----------------cccCCc--c----CeeecCHHHHHHHHHHcC
Confidence 999999999988762 222210 0 011111 1 345688899999999999
Q ss_pred ceEecEEEE
Q 016644 300 SFVINKLEV 308 (385)
Q Consensus 300 sF~i~~le~ 308 (385)
+++.+-+.
T Consensus 194 -l~~v~~~~ 201 (218)
T PF05891_consen 194 -LRLVKEEK 201 (218)
T ss_dssp --EEEEEEE
T ss_pred -CEEEEecc
Confidence 87766554
No 115
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.39 E-value=0.01 Score=56.66 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhccCCeEEEEe
Q 016644 214 DLAAFLGARSKEMKRCGSMFLVC 236 (385)
Q Consensus 214 D~~~FL~~Ra~EL~pGG~lvl~~ 236 (385)
||..|++--.+-|+|||.|.+.=
T Consensus 242 n~~df~kEa~RiLk~gG~l~IAE 264 (325)
T KOG3045|consen 242 NLADFIKEANRILKPGGLLYIAE 264 (325)
T ss_pred cHHHHHHHHHHHhccCceEEEEe
Confidence 57788888899999999996653
No 116
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.37 E-value=0.0074 Score=57.05 Aligned_cols=104 Identities=19% Similarity=0.233 Sum_probs=63.7
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
-.+|+|+|||-|..|..+. + --.+|+-.|+-.-.--. .+.-.. ++.... + |.
T Consensus 60 g~~vLDvGCGgG~Lse~mA--------r---------~Ga~VtgiD~se~~I~~-Ak~ha~-----e~gv~i----~-y~ 111 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLA--------R---------LGASVTGIDASEKPIEV-AKLHAL-----ESGVNI----D-YR 111 (243)
T ss_pred CCeEEEecCCccHhhHHHH--------H---------CCCeeEEecCChHHHHH-HHHhhh-----hccccc----c-ch
Confidence 4899999999997777664 1 23789999985311110 110000 000000 0 11
Q ss_pred ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
.+ . -+.| ...+++|+|.|.=.|+-+.+ + ..|+++.++
T Consensus 112 ~~---~-~edl~~~~~~FDvV~cmEVlEHv~d---p-----------------------------------~~~~~~c~~ 149 (243)
T COG2227 112 QA---T-VEDLASAGGQFDVVTCMEVLEHVPD---P-----------------------------------ESFLRACAK 149 (243)
T ss_pred hh---h-HHHHHhcCCCccEEEEhhHHHccCC---H-----------------------------------HHHHHHHHH
Confidence 11 1 2455 33489999998777766544 2 236688999
Q ss_pred hhccCCeEEEEeccC
Q 016644 225 EMKRCGSMFLVCLGR 239 (385)
Q Consensus 225 EL~pGG~lvl~~~g~ 239 (385)
=+||||.|+++..-|
T Consensus 150 lvkP~G~lf~STinr 164 (243)
T COG2227 150 LVKPGGILFLSTINR 164 (243)
T ss_pred HcCCCcEEEEecccc
Confidence 999999999999877
No 117
>PRK14968 putative methyltransferase; Provisional
Probab=96.36 E-value=0.012 Score=52.59 Aligned_cols=125 Identities=10% Similarity=0.029 Sum_probs=66.1
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
.-+|+|+|||+|..++.+... ..+++.-|+..+-....-+++... ........+
T Consensus 24 ~~~vLd~G~G~G~~~~~l~~~-----------------~~~v~~~D~s~~~~~~a~~~~~~~--------~~~~~~~~~- 77 (188)
T PRK14968 24 GDRVLEVGTGSGIVAIVAAKN-----------------GKKVVGVDINPYAVECAKCNAKLN--------NIRNNGVEV- 77 (188)
T ss_pred CCEEEEEccccCHHHHHHHhh-----------------cceEEEEECCHHHHHHHHHHHHHc--------CCCCcceEE-
Confidence 358999999999987776521 146777787544433332222110 000000112
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
+.+++...+ +++++|+++++..+.+-. |..... ..++. .+..+.. ....+..|++.-.+-
T Consensus 78 --~~~d~~~~~-~~~~~d~vi~n~p~~~~~--~~~~~~---~~~~~--~~~~~~~----------~~~~~~~~i~~~~~~ 137 (188)
T PRK14968 78 --IRSDLFEPF-RGDKFDVILFNPPYLPTE--EEEEWD---DWLNY--ALSGGKD----------GREVIDRFLDEVGRY 137 (188)
T ss_pred --Eeccccccc-cccCceEEEECCCcCCCC--chhhhh---hhhhh--hhccCcC----------hHHHHHHHHHHHHHh
Confidence 334655544 566999999876654321 111100 00000 0000000 112356778888999
Q ss_pred hccCCeEEEEe
Q 016644 226 MKRCGSMFLVC 236 (385)
Q Consensus 226 L~pGG~lvl~~ 236 (385)
|+|||.+++..
T Consensus 138 Lk~gG~~~~~~ 148 (188)
T PRK14968 138 LKPGGRILLLQ 148 (188)
T ss_pred cCCCeEEEEEE
Confidence 99999998876
No 118
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=96.35 E-value=0.018 Score=56.28 Aligned_cols=107 Identities=20% Similarity=0.303 Sum_probs=64.5
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc--ee
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS--YF 144 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~--~f 144 (385)
-+|||+|||-|...+.+.+ .. |..++.+.|. |+-.+-.+-. ..+.+...+ +|
T Consensus 160 ~~vlDlGCG~Gvlg~~la~--------~~-------p~~~vtmvDv---n~~Av~~ar~--------Nl~~N~~~~~~v~ 213 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAK--------KS-------PQAKLTLVDV---NARAVESARK--------NLAANGVENTEVW 213 (300)
T ss_pred CcEEEeCCCccHHHHHHHH--------hC-------CCCeEEEEec---CHHHHHHHHH--------hHHHcCCCccEEE
Confidence 3899999999999988863 22 7899999996 5554422111 111111222 22
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
. .+=|+.+.. ++|+|+|| |+.... + .+...+.+ .++..-++
T Consensus 214 ~----s~~~~~v~~--kfd~IisN---------PPfh~G---------~----~v~~~~~~-----------~~i~~A~~ 254 (300)
T COG2813 214 A----SNLYEPVEG--KFDLIISN---------PPFHAG---------K----AVVHSLAQ-----------EIIAAAAR 254 (300)
T ss_pred E----ecccccccc--cccEEEeC---------CCccCC---------c----chhHHHHH-----------HHHHHHHH
Confidence 2 255777765 99999997 433211 0 01111111 34455678
Q ss_pred hhccCCeEEEEecc
Q 016644 225 EMKRCGSMFLVCLG 238 (385)
Q Consensus 225 EL~pGG~lvl~~~g 238 (385)
-|++||.|.++.-|
T Consensus 255 ~L~~gGeL~iVan~ 268 (300)
T COG2813 255 HLKPGGELWIVANR 268 (300)
T ss_pred hhccCCEEEEEEcC
Confidence 99999999888753
No 119
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.31 E-value=0.011 Score=58.89 Aligned_cols=50 Identities=24% Similarity=0.326 Sum_probs=37.2
Q ss_pred cCCCC--cccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEE
Q 016644 156 LFPTR--SIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMF 233 (385)
Q Consensus 156 LfP~~--Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lv 233 (385)
.+++. .+|+|-+-+|||..=.... -...||+..++-|+|||.++
T Consensus 138 ~~~~~~~~FDvVScQFalHY~Fese~----------------------------------~ar~~l~Nvs~~Lk~GG~FI 183 (331)
T PF03291_consen 138 KLPPRSRKFDVVSCQFALHYAFESEE----------------------------------KARQFLKNVSSLLKPGGYFI 183 (331)
T ss_dssp TSSSTTS-EEEEEEES-GGGGGSSHH----------------------------------HHHHHHHHHHHTEEEEEEEE
T ss_pred hccccCCCcceeehHHHHHHhcCCHH----------------------------------HHHHHHHHHHHhcCCCCEEE
Confidence 35555 9999999999999644222 24678999999999999999
Q ss_pred EEeccC
Q 016644 234 LVCLGR 239 (385)
Q Consensus 234 l~~~g~ 239 (385)
.+++-.
T Consensus 184 gT~~d~ 189 (331)
T PF03291_consen 184 GTTPDS 189 (331)
T ss_dssp EEEE-H
T ss_pred EEecCH
Confidence 998643
No 120
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.30 E-value=0.02 Score=59.23 Aligned_cols=125 Identities=10% Similarity=0.038 Sum_probs=73.0
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCc-ee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRS-YF 144 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~-~f 144 (385)
..+|+|+|||+|..|+.+...+ . ..-+|+..|+-......+-+.+... ...+ .+
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~--------~------~~~~V~avD~s~~~l~~~~~~~~~~-----------g~~~v~~ 305 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELM--------Q------NRGQITAVDRYPQKLEKIRSHASAL-----------GITIIET 305 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHh--------C------CCcEEEEEECCHHHHHHHHHHHHHh-----------CCCeEEE
Confidence 3689999999999998776332 0 2358899998665555554444311 0112 12
Q ss_pred eccccCccccccCCCCcccEEEc----ccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHS----AFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG 220 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~S----s~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~ 220 (385)
+. ++. ..+.|++++|.|+. +.+-+|- +.|..... .+++.. .+..+.-..+|.
T Consensus 306 ~~---~Da-~~~~~~~~fD~Vl~D~Pcsg~g~~~-r~p~~~~~---------------~~~~~~----~~l~~~q~~iL~ 361 (445)
T PRK14904 306 IE---GDA-RSFSPEEQPDAILLDAPCTGTGVLG-RRAELRWK---------------LTPEKL----AELVGLQAELLD 361 (445)
T ss_pred Ee---Ccc-cccccCCCCCEEEEcCCCCCcchhh-cCcchhhc---------------CCHHHH----HHHHHHHHHHHH
Confidence 22 232 23346788999983 3333332 22322110 122211 223445667899
Q ss_pred HHHhhhccCCeEEEEeccC
Q 016644 221 ARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 221 ~Ra~EL~pGG~lvl~~~g~ 239 (385)
.-++-|+|||+|+.++...
T Consensus 362 ~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 362 HAASLLKPGGVLVYATCSI 380 (445)
T ss_pred HHHHhcCCCcEEEEEeCCC
Confidence 9999999999999987554
No 121
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.25 E-value=0.02 Score=59.10 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=68.2
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|.-|+.+.+.. .+.-+|+..|+-.+--..+-+++... ...++
T Consensus 251 g~~VLDlgaG~G~~t~~la~~~--------------~~~~~v~avDi~~~~l~~~~~n~~~~-----------g~~~v-- 303 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAELL--------------KNTGKVVALDIHEHKLKLIEENAKRL-----------GLTNI-- 303 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHHHh--------------CCCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCeE--
Confidence 3689999999999999876322 13458889998554444443333210 01111
Q ss_pred ccccCcccc--ccCCCCcccEEEcc---cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHH
Q 016644 146 AGVPGSFYR--RLFPTRSIDFFHSA---FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLG 220 (385)
Q Consensus 146 ~~vpgSFy~--rLfP~~Svd~~~Ss---~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~ 220 (385)
..+-+++.. .-++ +++|+|++. +.+..+.+.|..... .++... ....+--..+|.
T Consensus 304 ~~~~~D~~~~~~~~~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~---------------~~~~~~----~~l~~~q~~iL~ 363 (444)
T PRK14902 304 ETKALDARKVHEKFA-EKFDKILVDAPCSGLGVIRRKPDIKYN---------------KTKEDI----ESLQEIQLEILE 363 (444)
T ss_pred EEEeCCcccccchhc-ccCCEEEEcCCCCCCeeeccCcchhhc---------------CCHHHH----HHHHHHHHHHHH
Confidence 112234322 1133 789999874 233334444432210 112211 122233356788
Q ss_pred HHHhhhccCCeEEEEe
Q 016644 221 ARSKEMKRCGSMFLVC 236 (385)
Q Consensus 221 ~Ra~EL~pGG~lvl~~ 236 (385)
.-.+-|+|||+||.++
T Consensus 364 ~a~~~LkpGG~lvyst 379 (444)
T PRK14902 364 SVAQYLKKGGILVYST 379 (444)
T ss_pred HHHHHcCCCCEEEEEc
Confidence 8889999999998665
No 122
>PLN03075 nicotianamine synthase; Provisional
Probab=96.11 E-value=0.02 Score=56.13 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=60.5
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
.+-+|||+|||.|+.|.+++.. ... |.-++.--|.-. +-+.+.+.+-.-.... ..+--|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa------~~~-------p~~~~~giD~d~-~ai~~Ar~~~~~~~gL-------~~rV~F 181 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAK------HHL-------PTTSFHNFDIDP-SANDVARRLVSSDPDL-------SKRMFF 181 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHH------hcC-------CCCEEEEEeCCH-HHHHHHHHHhhhccCc-------cCCcEE
Confidence 5688999999999987766521 112 555677777643 2222222221000000 011223
Q ss_pred eccccCccccccCC-CCcccEEEccccccccc-CCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRRLFP-TRSIDFFHSAFSLHWLS-QVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR 222 (385)
Q Consensus 145 ~~~vpgSFy~rLfP-~~Svd~~~Ss~alHWLS-~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R 222 (385)
..+ +-.+ +.+ .+.+|+||+. ++|-.+ ..+..+ |..-
T Consensus 182 ~~~---Da~~-~~~~l~~FDlVF~~-ALi~~dk~~k~~v-------------------------------------L~~l 219 (296)
T PLN03075 182 HTA---DVMD-VTESLKEYDVVFLA-ALVGMDKEEKVKV-------------------------------------IEHL 219 (296)
T ss_pred EEC---chhh-cccccCCcCEEEEe-cccccccccHHHH-------------------------------------HHHH
Confidence 332 2111 222 4789999999 665543 333322 3456
Q ss_pred HhhhccCCeEEEEe
Q 016644 223 SKEMKRCGSMFLVC 236 (385)
Q Consensus 223 a~EL~pGG~lvl~~ 236 (385)
++-|+|||.+++-+
T Consensus 220 ~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 220 GKHMAPGALLMLRS 233 (296)
T ss_pred HHhcCCCcEEEEec
Confidence 88999999998876
No 123
>PRK04457 spermidine synthase; Provisional
Probab=96.10 E-value=0.033 Score=53.61 Aligned_cols=113 Identities=9% Similarity=0.095 Sum_probs=62.1
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh-cCCCCCCchhHhhhcCcCCce
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ-LLPPIGSSMEECLASDTHRSY 143 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~-~l~~~~~~~~~~~~~~~~~~~ 143 (385)
++-+|+|+|||+|..+..+.. .. |..++..-|+-..- -.+.+ .+... ...+++
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~--------~~-------p~~~v~~VEidp~v-i~~A~~~f~~~----------~~~~rv 119 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYT--------YL-------PDTRQTAVEINPQV-IAVARNHFELP----------ENGERF 119 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHH--------hC-------CCCeEEEEECCHHH-HHHHHHHcCCC----------CCCCce
Confidence 456899999999997776652 22 56778888883322 22222 12110 001122
Q ss_pred -eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 -FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGAR 222 (385)
Q Consensus 144 -f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~R 222 (385)
++.+=...|..+. ++++|+|+... ++-- ..|..+. -..|++..
T Consensus 120 ~v~~~Da~~~l~~~--~~~yD~I~~D~-~~~~-~~~~~l~--------------------------------t~efl~~~ 163 (262)
T PRK04457 120 EVIEADGAEYIAVH--RHSTDVILVDG-FDGE-GIIDALC--------------------------------TQPFFDDC 163 (262)
T ss_pred EEEECCHHHHHHhC--CCCCCEEEEeC-CCCC-CCccccC--------------------------------cHHHHHHH
Confidence 2223222333322 35799998752 2211 1222211 13566777
Q ss_pred HhhhccCCeEEEEeccC
Q 016644 223 SKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 223 a~EL~pGG~lvl~~~g~ 239 (385)
.+-|+|||+|++...++
T Consensus 164 ~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 164 RNALSSDGIFVVNLWSR 180 (262)
T ss_pred HHhcCCCcEEEEEcCCC
Confidence 88899999999977655
No 124
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=0.014 Score=56.66 Aligned_cols=126 Identities=13% Similarity=0.085 Sum_probs=69.4
Q ss_pred EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeecc
Q 016644 68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAG 147 (385)
Q Consensus 68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~ 147 (385)
+|+|+|||||.-++.+.... |...|+..|+-..=....-++... ....+++. .
T Consensus 113 ~ilDlGTGSG~iai~la~~~---------------~~~~V~a~Dis~~Al~~A~~Na~~-----------~~l~~~~~-~ 165 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG---------------PDAEVIAVDISPDALALARENAER-----------NGLVRVLV-V 165 (280)
T ss_pred cEEEecCChHHHHHHHHhhC---------------cCCeEEEEECCHHHHHHHHHHHHH-----------cCCccEEE-E
Confidence 89999999999998887433 667999999943111111111110 11112211 2
Q ss_pred ccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 016644 148 VPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKK-QFQTDLAAFLGARSKEM 226 (385)
Q Consensus 148 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~-q~~~D~~~FL~~Ra~EL 226 (385)
.. ++++.+-. .+|+++|| |+-+..+ ......+-+ .-.| ....+.. ---....+|+..-.+-|
T Consensus 166 ~~-dlf~~~~~--~fDlIVsN---------PPYip~~-~~~~~~~~~---~~EP-~~Al~~g~dGl~~~~~i~~~a~~~l 228 (280)
T COG2890 166 QS-DLFEPLRG--KFDLIVSN---------PPYIPAE-DPELLPEVV---RYEP-LLALVGGGDGLEVYRRILGEAPDIL 228 (280)
T ss_pred ee-ecccccCC--ceeEEEeC---------CCCCCCc-ccccChhhh---ccCH-HHHHccCccHHHHHHHHHHhhHHHc
Confidence 22 66666655 89999996 6655432 110000000 0011 1111111 12235677888888999
Q ss_pred ccCCeEEEEec
Q 016644 227 KRCGSMFLVCL 237 (385)
Q Consensus 227 ~pGG~lvl~~~ 237 (385)
+|||.+++...
T Consensus 229 ~~~g~l~le~g 239 (280)
T COG2890 229 KPGGVLILEIG 239 (280)
T ss_pred CCCcEEEEEEC
Confidence 99999988773
No 125
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=95.96 E-value=0.017 Score=53.09 Aligned_cols=113 Identities=21% Similarity=0.400 Sum_probs=65.9
Q ss_pred EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-eec
Q 016644 68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-FAA 146 (385)
Q Consensus 68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f~~ 146 (385)
.++|+|||.|...+.+. ... |+..++--|.-. +.+.+.+.. ..+ ....++ ++.
T Consensus 20 l~lEIG~G~G~~l~~~A--------~~~-------Pd~n~iGiE~~~---~~v~~a~~~-------~~~-~~l~Nv~~~~ 73 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELA--------KRN-------PDINFIGIEIRK---KRVAKALRK-------AEK-RGLKNVRFLR 73 (195)
T ss_dssp EEEEET-TTSHHHHHHH--------HHS-------TTSEEEEEES-H---HHHHHHHHH-------HHH-HTTSSEEEEE
T ss_pred eEEEecCCCCHHHHHHH--------HHC-------CCCCEEEEecch---HHHHHHHHH-------HHh-hcccceEEEE
Confidence 78999999999887775 222 788888888843 333332211 001 112344 444
Q ss_pred cccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 016644 147 GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEM 226 (385)
Q Consensus 147 ~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL 226 (385)
+-...+...++|++||+-++=++-==|-.+-.. |.++ .. ..||..-++-|
T Consensus 74 ~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~-----------krRl----~~---------------~~fl~~~~~~L 123 (195)
T PF02390_consen 74 GDARELLRRLFPPGSVDRIYINFPDPWPKKRHH-----------KRRL----VN---------------PEFLELLARVL 123 (195)
T ss_dssp S-CTTHHHHHSTTTSEEEEEEES-----SGGGG-----------GGST----TS---------------HHHHHHHHHHE
T ss_pred ccHHHHHhhcccCCchheEEEeCCCCCcccchh-----------hhhc----CC---------------chHHHHHHHHc
Confidence 444566788999999999988876666433211 1111 11 24666678999
Q ss_pred ccCCeEEEEe
Q 016644 227 KRCGSMFLVC 236 (385)
Q Consensus 227 ~pGG~lvl~~ 236 (385)
+|||.+.+.+
T Consensus 124 ~~gG~l~~~T 133 (195)
T PF02390_consen 124 KPGGELYFAT 133 (195)
T ss_dssp EEEEEEEEEE
T ss_pred CCCCEEEEEe
Confidence 9999996655
No 126
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.89 E-value=0.019 Score=55.35 Aligned_cols=113 Identities=13% Similarity=0.097 Sum_probs=61.6
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY- 143 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~- 143 (385)
++-+|+|+|||+|..+..+++ . .+.-++...|+-.+-....-+.++..... .+ .+.+
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~--------~-------~~~~~v~~veid~~vi~~a~~~~~~~~~~------~~-~~~v~ 129 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLK--------H-------KSVEKATLVDIDEKVIELSKKFLPSLAGS------YD-DPRVD 129 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHh--------C-------CCcceEEEEeCCHHHHHHHHHHhHhhccc------cc-CCceE
Confidence 456999999999997655541 1 12346778887655444433333321000 00 1111
Q ss_pred eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
+..+-+..|..+. ++++|+|++..+-++-. +..+ | -..|++..+
T Consensus 130 i~~~D~~~~l~~~--~~~yDvIi~D~~~~~~~--~~~l-------------------------~-------~~ef~~~~~ 173 (270)
T TIGR00417 130 LQIDDGFKFLADT--ENTFDVIIVDSTDPVGP--AETL-------------------------F-------TKEFYELLK 173 (270)
T ss_pred EEECchHHHHHhC--CCCccEEEEeCCCCCCc--ccch-------------------------h-------HHHHHHHHH
Confidence 1222222333332 57899999876544311 1111 1 135666678
Q ss_pred hhhccCCeEEEE
Q 016644 224 KEMKRCGSMFLV 235 (385)
Q Consensus 224 ~EL~pGG~lvl~ 235 (385)
+-|+|||++++.
T Consensus 174 ~~L~pgG~lv~~ 185 (270)
T TIGR00417 174 KALNEDGIFVAQ 185 (270)
T ss_pred HHhCCCcEEEEc
Confidence 999999999886
No 127
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=95.82 E-value=0.045 Score=50.97 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=15.2
Q ss_pred ceEEeeeCCCCCcchHHHH
Q 016644 66 PFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~ 84 (385)
-.+|+|+|||||.+|-.+.
T Consensus 73 g~~VLeIGtGsGY~aAlla 91 (209)
T PF01135_consen 73 GDRVLEIGTGSGYQAALLA 91 (209)
T ss_dssp T-EEEEES-TTSHHHHHHH
T ss_pred CCEEEEecCCCcHHHHHHH
Confidence 4899999999999998775
No 128
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=95.75 E-value=0.16 Score=49.12 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhccCCeEEEEeccCC
Q 016644 215 LAAFLGARSKEMKRCGSMFLVCLGRT 240 (385)
Q Consensus 215 ~~~FL~~Ra~EL~pGG~lvl~~~g~~ 240 (385)
+..|+..-.+-|+|||.+++...++.
T Consensus 264 ~~~~~~~a~R~Lq~gg~~~le~~~~~ 289 (328)
T KOG2904|consen 264 LVHYWLLATRMLQPGGFEQLELVERK 289 (328)
T ss_pred HHHHHHhhHhhcccCCeEEEEecccc
Confidence 55677778899999999999999884
No 129
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=95.73 E-value=0.031 Score=55.47 Aligned_cols=19 Identities=16% Similarity=0.331 Sum_probs=16.9
Q ss_pred ceEEeeeCCCCCcchHHHH
Q 016644 66 PFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~ 84 (385)
..+|+|+|||+|.++..+.
T Consensus 81 g~~VLDIG~GtG~~a~~LA 99 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMS 99 (322)
T ss_pred CCEEEEEeCCccHHHHHHH
Confidence 4689999999999998876
No 130
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=95.61 E-value=0.085 Score=52.28 Aligned_cols=25 Identities=16% Similarity=0.079 Sum_probs=20.1
Q ss_pred HHHHHHHHHhhhccCCeEEEEeccC
Q 016644 215 LAAFLGARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 215 ~~~FL~~Ra~EL~pGG~lvl~~~g~ 239 (385)
...+|..-++-|+|||++++.+...
T Consensus 273 ~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 273 YERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred HHHHHHHHHHHccCCcEEEEEEcCC
Confidence 4567777788999999999988654
No 131
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=95.26 E-value=0.12 Score=53.43 Aligned_cols=125 Identities=14% Similarity=0.087 Sum_probs=66.2
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F 144 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f 144 (385)
..+|+|+|||+|.-|+.+...+ .+.-+|+-.|.-..-...+-+++... ...++ +
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~--------------~~~g~v~a~D~~~~rl~~~~~n~~r~-----------g~~~v~~ 307 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELM--------------GDQGEIWAVDRSASRLKKLQENAQRL-----------GLKSIKI 307 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHh--------------CCCceEEEEcCCHHHHHHHHHHHHHc-----------CCCeEEE
Confidence 4689999999999998886322 02357888888544433333333211 01121 2
Q ss_pred eccccCccc--ccc--CCCCcccEEEccc---ccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFY--RRL--FPTRSIDFFHSAF---SLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAA 217 (385)
Q Consensus 145 ~~~vpgSFy--~rL--fP~~Svd~~~Ss~---alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~ 217 (385)
+. ++.- ... ++++++|.|+.-. .+-=+.+.|.... ..+++.. ..+.+.-..
T Consensus 308 ~~---~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~---------------~~~~~~~----~~l~~~Q~~ 365 (434)
T PRK14901 308 LA---ADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARW---------------RQTPEKI----QELAPLQAE 365 (434)
T ss_pred Ee---CChhhcccccccccccCCEEEEeCCCCcccccccCcchhh---------------hCCHHHH----HHHHHHHHH
Confidence 22 2221 111 3467889887421 0111111222110 0122211 223344577
Q ss_pred HHHHHHhhhccCCeEEEEec
Q 016644 218 FLGARSKEMKRCGSMFLVCL 237 (385)
Q Consensus 218 FL~~Ra~EL~pGG~lvl~~~ 237 (385)
+|..-++-|+|||+||.++.
T Consensus 366 iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 366 LLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred HHHHHHHhcCCCCEEEEEeC
Confidence 88999999999999987763
No 132
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=95.19 E-value=0.056 Score=56.94 Aligned_cols=141 Identities=13% Similarity=0.129 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCC
Q 016644 34 SQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLP 113 (385)
Q Consensus 34 S~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp 113 (385)
...|++.++...|.+--..+.+ + . ...-.++|+|||.|..++.+.. .. |+..++--|.-
T Consensus 322 ~~~q~~~~e~~~p~~~i~~ekl----f-~-~~~p~~lEIG~G~G~~~~~~A~--------~~-------p~~~~iGiE~~ 380 (506)
T PRK01544 322 SGVQQNLLDNELPKYLFSKEKL----V-N-EKRKVFLEIGFGMGEHFINQAK--------MN-------PDALFIGVEVY 380 (506)
T ss_pred CHHHHHHHHhhhhhhCCCHHHh----C-C-CCCceEEEECCCchHHHHHHHH--------hC-------CCCCEEEEEee
Confidence 4478888888888765333332 2 1 2345679999999998887752 22 77777777764
Q ss_pred CCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCc
Q 016644 114 SNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGK 193 (385)
Q Consensus 114 ~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~ 193 (385)
. +.+-+.+.. .+...-.++.+..-...+....||++|||-+|-++.==|-.+... |.+
T Consensus 381 ~---~~~~~~~~~--------~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~-----------krR 438 (506)
T PRK01544 381 L---NGVANVLKL--------AGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQK-----------KKR 438 (506)
T ss_pred H---HHHHHHHHH--------HHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECCCCCCCCCCc-----------ccc
Confidence 3 333332221 001112344332222234577799999999999988777433211 112
Q ss_pred eEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEe
Q 016644 194 VYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVC 236 (385)
Q Consensus 194 i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 236 (385)
+ .+ ..||..-++-|+|||.+.+.+
T Consensus 439 l----~~---------------~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 439 I----FN---------------KERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred c----cC---------------HHHHHHHHHhcCCCCEEEEEc
Confidence 2 11 235666789999999996654
No 133
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.19 E-value=0.024 Score=50.50 Aligned_cols=76 Identities=8% Similarity=-0.006 Sum_probs=46.1
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..|..+++. ..+++.-|+-......+-+.+.. ..++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~~-----------------~~~v~~vE~~~~~~~~~~~~~~~-------------~~~v-- 61 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLER-----------------AARVTAIEIDPRLAPRLREKFAA-------------ADNL-- 61 (169)
T ss_pred cCEEEEECCCccHHHHHHHhc-----------------CCeEEEEECCHHHHHHHHHHhcc-------------CCCE--
Confidence 358999999999999988632 13567777643232333222221 0111
Q ss_pred ccccCccccccCCCCcccEEEccccccc
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHW 173 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHW 173 (385)
-.+-+++.+-.+++.++|.++|+.-+|+
T Consensus 62 ~ii~~D~~~~~~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 62 TVIHGDALKFDLPKLQPYKVVGNLPYNI 89 (169)
T ss_pred EEEECchhcCCccccCCCEEEECCCccc
Confidence 1244576665577777899998765554
No 134
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=95.18 E-value=0.11 Score=49.89 Aligned_cols=126 Identities=10% Similarity=0.054 Sum_probs=66.7
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-e
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY-F 144 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~-f 144 (385)
..+|+|+|||+|.-|+.+.+.+ . +.-.|+..|.-..-...+-+++... ...++ +
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~--------~------~~g~v~a~D~~~~~l~~~~~n~~~~-----------g~~~v~~ 126 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALM--------K------NEGAIVANEFSKSRTKVLIANINRC-----------GVLNVAV 126 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHc--------C------CCCEEEEEcCCHHHHHHHHHHHHHc-----------CCCcEEE
Confidence 4689999999999998876332 1 1246888898655555544444321 01121 1
Q ss_pred eccccCccccccCCCCcccEEEcc---cccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSA---FSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA 221 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss---~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~ 221 (385)
+.+-... +. .+.+++|.|+.- +..-.+.+.|..... .+++ -..+..+.-..+|..
T Consensus 127 ~~~D~~~-~~--~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~---------------~~~~----~~~~l~~~q~~iL~~ 184 (264)
T TIGR00446 127 TNFDGRV-FG--AAVPKFDAILLDAPCSGEGVIRKDPSRKKN---------------WSEE----DIQEISALQKELIDS 184 (264)
T ss_pred ecCCHHH-hh--hhccCCCEEEEcCCCCCCcccccChhhhhc---------------CCHH----HHHHHHHHHHHHHHH
Confidence 1111111 11 123458887742 122222222322100 0121 112334445668898
Q ss_pred HHhhhccCCeEEEEecc
Q 016644 222 RSKEMKRCGSMFLVCLG 238 (385)
Q Consensus 222 Ra~EL~pGG~lvl~~~g 238 (385)
-++-|+|||+||.++..
T Consensus 185 a~~~lkpgG~lvYstcs 201 (264)
T TIGR00446 185 AFDALKPGGVLVYSTCS 201 (264)
T ss_pred HHHhcCCCCEEEEEeCC
Confidence 99999999999877643
No 135
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=95.10 E-value=0.066 Score=52.77 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=68.1
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCC---CCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLP---SNDFNTLFQLLPPIGSSMEECLASDTHRSY 143 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp---~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~ 143 (385)
-.++|||||-|.--+-.-..- -=+++..|.. .||-..-.+.+... -+..-+...
T Consensus 119 ~~~~~LgCGKGGDLlKw~kAg----------------I~~~igiDIAevSI~qa~~RYrdm~~r-------~~~~~f~a~ 175 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKAG----------------IGEYIGIDIAEVSINQARKRYRDMKNR-------FKKFIFTAV 175 (389)
T ss_pred cccceeccCCcccHhHhhhhc----------------ccceEeeehhhccHHHHHHHHHHHHhh-------hhcccceeE
Confidence 457889999999655443111 1233444443 45555444433210 001112344
Q ss_pred eeccccCcccccc---C--CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSFYRRL---F--PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAF 218 (385)
Q Consensus 144 f~~~vpgSFy~rL---f--P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~F 218 (385)
|++| -+|+++| + ++-++|+|=|=+|+|+.=.--+ -...+
T Consensus 176 f~~~--Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee----------------------------------~ar~~ 219 (389)
T KOG1975|consen 176 FIAA--DCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEE----------------------------------SARIA 219 (389)
T ss_pred EEEe--ccchhHHHHhccCCCCCcceeeeeeeEeeeeccHH----------------------------------HHHHH
Confidence 5433 5777555 3 5666999999999998422111 12356
Q ss_pred HHHHHhhhccCCeEEEEeccC
Q 016644 219 LGARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 219 L~~Ra~EL~pGG~lvl~~~g~ 239 (385)
|+.-++-|+|||.|+-+++-.
T Consensus 220 l~Nva~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 220 LRNVAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred HHHHHhhcCCCcEEEEecCcH
Confidence 788999999999999888654
No 136
>PRK03612 spermidine synthase; Provisional
Probab=95.01 E-value=0.14 Score=54.02 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=75.2
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh--cCCCCCCchhHhhhcCcCCc
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ--LLPPIGSSMEECLASDTHRS 142 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~--~l~~~~~~~~~~~~~~~~~~ 142 (385)
++-+|+|+|||+|..+..+. ++ ++.-++..-|+-..-....-+ .++..... . .+ .++
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll--------~~-------~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~--~---~~-dpr 355 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVL--------KY-------PDVEQVTLVDLDPAMTELARTSPALRALNGG--A---LD-DPR 355 (521)
T ss_pred CCCeEEEEcCCccHHHHHHH--------hC-------CCcCeEEEEECCHHHHHHHHhCCcchhhhcc--c---cC-CCc
Confidence 46789999999998665554 11 122577888875433333322 12211000 0 00 112
Q ss_pred e-eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644 143 Y-FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGA 221 (385)
Q Consensus 143 ~-f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~ 221 (385)
+ ++.+=+..|..+ .++++|+|++...-.|- |.. .+.|. ..|++.
T Consensus 356 v~vi~~Da~~~l~~--~~~~fDvIi~D~~~~~~---~~~-----------------------~~L~t-------~ef~~~ 400 (521)
T PRK03612 356 VTVVNDDAFNWLRK--LAEKFDVIIVDLPDPSN---PAL-----------------------GKLYS-------VEFYRL 400 (521)
T ss_pred eEEEEChHHHHHHh--CCCCCCEEEEeCCCCCC---cch-----------------------hccch-------HHHHHH
Confidence 2 222322233222 35789999998544331 110 01111 235555
Q ss_pred HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccc
Q 016644 222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVY 284 (385)
Q Consensus 222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y 284 (385)
-.+-|+|||++++...... . . .+.+.+..+.|.+.|. .-..-..++|.|
T Consensus 401 ~~~~L~pgG~lv~~~~~~~-----~------~-~~~~~~i~~~l~~~gf--~v~~~~~~vps~ 449 (521)
T PRK03612 401 LKRRLAPDGLLVVQSTSPY-----F------A-PKAFWSIEATLEAAGL--ATTPYHVNVPSF 449 (521)
T ss_pred HHHhcCCCeEEEEecCCcc-----c------c-hHHHHHHHHHHHHcCC--EEEEEEeCCCCc
Confidence 6688999999988753221 0 0 1345666666766675 222223345666
No 137
>PLN02366 spermidine synthase
Probab=94.99 E-value=0.077 Score=52.35 Aligned_cols=117 Identities=12% Similarity=0.120 Sum_probs=62.7
Q ss_pred CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce
Q 016644 64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY 143 (385)
Q Consensus 64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~ 143 (385)
+++-+|+++|||.|.....++ ++ ++.-+|..-|+...--....+.++..... .++.+--
T Consensus 90 ~~pkrVLiIGgG~G~~~rell--------k~-------~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~------~~dpRv~ 148 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIA--------RH-------SSVEQIDICEIDKMVIDVSKKFFPDLAVG------FDDPRVN 148 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHH--------hC-------CCCCeEEEEECCHHHHHHHHHhhhhhccc------cCCCceE
Confidence 356899999999999554443 11 12357777787643222222223321000 0111111
Q ss_pred eeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 144 FAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 144 f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
++.+=+..|.++. |++++|+|++-.+-+|- .+..+ |. ..|++...
T Consensus 149 vi~~Da~~~l~~~-~~~~yDvIi~D~~dp~~--~~~~L-------------------------~t-------~ef~~~~~ 193 (308)
T PLN02366 149 LHIGDGVEFLKNA-PEGTYDAIIVDSSDPVG--PAQEL-------------------------FE-------KPFFESVA 193 (308)
T ss_pred EEEChHHHHHhhc-cCCCCCEEEEcCCCCCC--chhhh-------------------------hH-------HHHHHHHH
Confidence 3334333444433 57789999986655442 11111 11 34666778
Q ss_pred hhhccCCeEEEEe
Q 016644 224 KEMKRCGSMFLVC 236 (385)
Q Consensus 224 ~EL~pGG~lvl~~ 236 (385)
+-|+|||.|+...
T Consensus 194 ~~L~pgGvlv~q~ 206 (308)
T PLN02366 194 RALRPGGVVCTQA 206 (308)
T ss_pred HhcCCCcEEEECc
Confidence 8899999997653
No 138
>PRK07402 precorrin-6B methylase; Provisional
Probab=94.86 E-value=0.054 Score=49.38 Aligned_cols=34 Identities=15% Similarity=0.048 Sum_probs=25.2
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS 114 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~ 114 (385)
.-+|+|+|||+|..|+.+.. .. |..+|+.-|+-.
T Consensus 41 ~~~VLDiG~G~G~~~~~la~--------~~-------~~~~V~~vD~s~ 74 (196)
T PRK07402 41 DSVLWDIGAGTGTIPVEAGL--------LC-------PKGRVIAIERDE 74 (196)
T ss_pred CCEEEEeCCCCCHHHHHHHH--------HC-------CCCEEEEEeCCH
Confidence 46899999999998887752 11 456788888743
No 139
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.078 Score=49.32 Aligned_cols=20 Identities=10% Similarity=0.177 Sum_probs=17.1
Q ss_pred CceEEeeeCCCCCcchHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~ 84 (385)
+..+|+|+|||||.+|-.+.
T Consensus 72 ~g~~VLEIGtGsGY~aAvla 91 (209)
T COG2518 72 PGDRVLEIGTGSGYQAAVLA 91 (209)
T ss_pred CCCeEEEECCCchHHHHHHH
Confidence 45899999999999987664
No 140
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=94.76 E-value=0.034 Score=53.81 Aligned_cols=130 Identities=18% Similarity=0.125 Sum_probs=79.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEE
Q 016644 29 SYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAF 108 (385)
Q Consensus 29 sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~ 108 (385)
-|++.+..=...-....|++.+.+.... ....++|.|||-|.-+.. .|...++
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~~--------~gsv~~d~gCGngky~~~-------------------~p~~~~i 69 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDSQP--------TGSVGLDVGCGNGKYLGV-------------------NPLCLII 69 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhccC--------CcceeeecccCCcccCcC-------------------CCcceee
Confidence 5777766644444556667777665442 357889999999974321 1445566
Q ss_pred ecCCCCCchHHHHhcCCCCCCchhHhhhcCcC-CceeeccccCccccccCCCCcccEEEcccccccccCCchhhhccccc
Q 016644 109 FSDLPSNDFNTLFQLLPPIGSSMEECLASDTH-RSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSM 187 (385)
Q Consensus 109 ~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~-~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~ 187 (385)
-.|+-. .++..- +.... ..++. .-..-.+++.|+|++.|.+.+||||..-.-.
T Consensus 70 g~D~c~-------~l~~~a--------k~~~~~~~~~a-----d~l~~p~~~~s~d~~lsiavihhlsT~~RR~------ 123 (293)
T KOG1331|consen 70 GCDLCT-------GLLGGA--------KRSGGDNVCRA-----DALKLPFREESFDAALSIAVIHHLSTRERRE------ 123 (293)
T ss_pred ecchhh-------hhcccc--------ccCCCceeehh-----hhhcCCCCCCccccchhhhhhhhhhhHHHHH------
Confidence 666521 222210 00111 11222 2235558999999999999999998743221
Q ss_pred ccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCC
Q 016644 188 AYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRT 240 (385)
Q Consensus 188 ~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~ 240 (385)
+-|.--.++|+|||.+.+...+..
T Consensus 124 -----------------------------~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 124 -----------------------------RALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred -----------------------------HHHHHHHHHhcCCCceEEEEehhh
Confidence 112335789999999999998874
No 141
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=94.73 E-value=0.72 Score=43.19 Aligned_cols=167 Identities=20% Similarity=0.241 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcC
Q 016644 45 LHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL 124 (385)
Q Consensus 45 ~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l 124 (385)
-|.|.+.+..+.. ...-+|++-|||.|...+.+.+ ...+|+--|+...=-...|+.-
T Consensus 23 ~p~L~~~~~~l~~------~~~~rvLvPgCG~g~D~~~La~-----------------~G~~VvGvDls~~Ai~~~~~e~ 79 (218)
T PF05724_consen 23 NPALVEYLDSLAL------KPGGRVLVPGCGKGYDMLWLAE-----------------QGHDVVGVDLSPTAIEQAFEEN 79 (218)
T ss_dssp THHHHHHHHHHTT------STSEEEEETTTTTSCHHHHHHH-----------------TTEEEEEEES-HHHHHHHHHHC
T ss_pred CHHHHHHHHhcCC------CCCCeEEEeCCCChHHHHHHHH-----------------CCCeEEEEecCHHHHHHHHHHh
Confidence 4555555554422 2457899999999998777752 1378888888765444444432
Q ss_pred CC-CCCchhHhhhcCcCCceeeccccCccccccCCC--CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCH
Q 016644 125 PP-IGSSMEECLASDTHRSYFAAGVPGSFYRRLFPT--RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANE 201 (385)
Q Consensus 125 ~~-~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~--~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~ 201 (385)
.. .........+......+ .-+-|+||. +-|. +++|+|+=-.+|+=| |+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i--~~~~gDfF~-l~~~~~g~fD~iyDr~~l~Al---pp~--------------------- 132 (218)
T PF05724_consen 80 NLEPTVTSVGGFKRYQAGRI--TIYCGDFFE-LPPEDVGKFDLIYDRTFLCAL---PPE--------------------- 132 (218)
T ss_dssp TTEEECTTCTTEEEETTSSE--EEEES-TTT-GGGSCHHSEEEEEECSSTTTS----GG---------------------
T ss_pred ccCCCcccccceeeecCCce--EEEEccccc-CChhhcCCceEEEEecccccC---CHH---------------------
Confidence 21 00000000000011111 122347776 2222 358999988888764 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccccccc
Q 016644 202 HTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNI 281 (385)
Q Consensus 202 ~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~ 281 (385)
.++.|.+| -++-|+|||++++.++-.+.. ...-
T Consensus 133 -~R~~Ya~~-----------l~~ll~p~g~~lLi~l~~~~~-----------------------------------~~~G 165 (218)
T PF05724_consen 133 -MRERYAQQ-----------LASLLKPGGRGLLITLEYPQG-----------------------------------EMEG 165 (218)
T ss_dssp -GHHHHHHH-----------HHHCEEEEEEEEEEEEES-CS-----------------------------------CSSS
T ss_pred -HHHHHHHH-----------HHHHhCCCCcEEEEEEEcCCc-----------------------------------CCCC
Confidence 35667766 678899999955554432100 0012
Q ss_pred ccccCCHHHHHHHHHhcCceEecEEEEEe
Q 016644 282 PVYASSLQEFKEVVEANGSFVINKLEVFK 310 (385)
Q Consensus 282 P~y~ps~~Ev~~~le~~gsF~i~~le~~~ 310 (385)
|=|.-+.+||.+++. .+ |+|+.++..+
T Consensus 166 PPf~v~~~ev~~l~~-~~-f~i~~l~~~~ 192 (218)
T PF05724_consen 166 PPFSVTEEEVRELFG-PG-FEIEELEEED 192 (218)
T ss_dssp SS----HHHHHHHHT-TT-EEEEEEEEEE
T ss_pred cCCCCCHHHHHHHhc-CC-cEEEEEeccc
Confidence 555567899999998 44 9999999865
No 142
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.50 E-value=0.51 Score=46.11 Aligned_cols=53 Identities=19% Similarity=0.390 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCC
Q 016644 42 QSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDL 112 (385)
Q Consensus 42 ~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDL 112 (385)
.++..+|++++..+.. .+.+++|+|+=||+|+- +++++.+.- ..| .+|.++|.
T Consensus 117 ~~l~~~i~~ai~~L~~-----~g~pvrIlDIAaG~GRY-------vlDal~~~~-----~~~-~~i~LrDy 169 (311)
T PF12147_consen 117 VHLEELIRQAIARLRE-----QGRPVRILDIAAGHGRY-------VLDALEKHP-----ERP-DSILLRDY 169 (311)
T ss_pred HHHHHHHHHHHHHHHh-----cCCceEEEEeccCCcHH-------HHHHHHhCC-----CCC-ceEEEEeC
Confidence 4566777777777743 46899999999999985 333333321 113 68899887
No 143
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=94.31 E-value=0.047 Score=52.74 Aligned_cols=142 Identities=11% Similarity=0.072 Sum_probs=75.4
Q ss_pred hhhhcccCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHH----------
Q 016644 16 EMILSMKGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVD---------- 85 (385)
Q Consensus 16 ~~~~~m~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~---------- 85 (385)
+..+.+.|=.-..+|.+|-..+..++..+...+. . .+..+|+|+|||+|..|..+..
T Consensus 6 ~~~l~~~~~~~~k~~gq~fl~~~~i~~~i~~~l~-------~------~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~ 72 (272)
T PRK00274 6 RELLERYGHRAKKSLGQNFLIDENILDKIVDAAG-------P------QPGDNVLEIGPGLGALTEPLLERAAKVTAVEI 72 (272)
T ss_pred HHHHHHcCCCCCcccCcCcCCCHHHHHHHHHhcC-------C------CCcCeEEEeCCCccHHHHHHHHhCCcEEEEEC
Confidence 3445554433345677766666665544433331 1 2346899999999999998887
Q ss_pred --HHHHHHHHHHHhcCCCCCceeEEecCCCCCchHH-----HHhcCCCCCCc--hhHhhhcCcCCceeeccccCcccccc
Q 016644 86 --VIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNT-----LFQLLPPIGSS--MEECLASDTHRSYFAAGVPGSFYRRL 156 (385)
Q Consensus 86 --~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~-----lF~~l~~~~~~--~~~~~~~~~~~~~f~~~vpgSFy~rL 156 (385)
..++.++++.. .+.++++..|...-++.. +..++|-..+. ..............+..+...|.+||
T Consensus 73 d~~~~~~~~~~~~-----~~~v~~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl 147 (272)
T PRK00274 73 DRDLAPILAETFA-----EDNLTIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERI 147 (272)
T ss_pred CHHHHHHHHHhhc-----cCceEEEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHH
Confidence 34555554432 135777777765444433 23344421111 12222211111223456778888888
Q ss_pred -CCCCcccEEEccccccccc
Q 016644 157 -FPTRSIDFFHSAFSLHWLS 175 (385)
Q Consensus 157 -fP~~Svd~~~Ss~alHWLS 175 (385)
.++++-+..--|.-.++..
T Consensus 148 ~a~pg~~~y~~lSv~~~~~~ 167 (272)
T PRK00274 148 VAKPGSKAYGRLSVLVQYYC 167 (272)
T ss_pred cCCCCCccccHHHHHHHHHc
Confidence 4556655543333334333
No 144
>PLN02672 methionine S-methyltransferase
Probab=94.16 E-value=0.097 Score=59.54 Aligned_cols=43 Identities=19% Similarity=0.252 Sum_probs=31.2
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcC
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL 124 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l 124 (385)
.+|+|+|||+|..++.+.... |..+|+..|+-..-.....+++
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~---------------~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKW---------------LPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHC---------------CCCEEEEEECCHHHHHHHHHHH
Confidence 589999999999999886322 4568999998655554444433
No 145
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=93.48 E-value=0.65 Score=43.84 Aligned_cols=118 Identities=9% Similarity=0.053 Sum_probs=68.2
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchh-HhhhcCcCCc-
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSME-ECLASDTHRS- 142 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~-~~~~~~~~~~- 142 (385)
+..+|++.|||.|.+...+.+ -..+|+-.|+...=-...|+...-...-.+ ...+......
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~-----------------~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 105 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLS-----------------KGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDI 105 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHh-----------------CCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCce
Confidence 346999999999999998862 236788888876555555553221000000 0000000011
Q ss_pred eeeccccCccccccC---CCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHH
Q 016644 143 YFAAGVPGSFYRRLF---PTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFL 219 (385)
Q Consensus 143 ~f~~~vpgSFy~rLf---P~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL 219 (385)
-+. -|+|++-=. .-+.+|+|+=..+|+=| |+. ....|.++
T Consensus 106 ~~~---~gD~f~l~~~~~~~~~fD~VyDra~~~Al---pp~----------------------~R~~Y~~~--------- 148 (226)
T PRK13256 106 EIY---VADIFNLPKIANNLPVFDIWYDRGAYIAL---PND----------------------LRTNYAKM--------- 148 (226)
T ss_pred EEE---EccCcCCCccccccCCcCeeeeehhHhcC---CHH----------------------HHHHHHHH---------
Confidence 122 236665110 12467888877777764 333 34556655
Q ss_pred HHHHhhhccCCeEEEEecc
Q 016644 220 GARSKEMKRCGSMFLVCLG 238 (385)
Q Consensus 220 ~~Ra~EL~pGG~lvl~~~g 238 (385)
-++-|+|||++++.++-
T Consensus 149 --l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 149 --MLEVCSNNTQILLLVME 165 (226)
T ss_pred --HHHHhCCCcEEEEEEEe
Confidence 67789999999999874
No 146
>PHA03412 putative methyltransferase; Provisional
Probab=93.16 E-value=0.058 Score=51.22 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=43.7
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+|||+|..++.+...+. ..+..+|+.-|+-.+-....-+.++. .-+.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~------------~~~~~~V~aVEID~~Al~~Ar~n~~~---------------~~~~ 102 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMM------------YAKPREIVCVELNHTYYKLGKRIVPE---------------ATWI 102 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcc------------cCCCcEEEEEECCHHHHHHHHhhccC---------------CEEE
Confidence 46999999999998888764331 01246788888855444443333321 1122
Q ss_pred ccccCccccccCCCCcccEEEcc
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSA 168 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss 168 (385)
-++|.... +++++|+|+|+
T Consensus 103 ---~~D~~~~~-~~~~FDlIIsN 121 (241)
T PHA03412 103 ---NADALTTE-FDTLFDMAISN 121 (241)
T ss_pred ---Ecchhccc-ccCCccEEEEC
Confidence 23554332 35789999996
No 147
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.00 E-value=0.093 Score=49.52 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHH
Q 016644 215 LAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEV 294 (385)
Q Consensus 215 ~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~ 294 (385)
+..++-.-+.-|+|||.|.++.=--.. ..++. +.. .--|..+..=|++.
T Consensus 204 Le~~~~~aa~~L~~gGlfaFSvE~l~~-------~~~f~----l~p--------------------s~RyAH~~~YVr~~ 252 (287)
T COG4976 204 LEGLFAGAAGLLAPGGLFAFSVETLPD-------DGGFV----LGP--------------------SQRYAHSESYVRAL 252 (287)
T ss_pred hhhHHHHHHHhcCCCceEEEEecccCC-------CCCee----cch--------------------hhhhccchHHHHHH
Confidence 334445678999999999888722110 00110 111 12366777778999
Q ss_pred HHhcCceEecEEEEE
Q 016644 295 VEANGSFVINKLEVF 309 (385)
Q Consensus 295 le~~gsF~i~~le~~ 309 (385)
++..| |++..++..
T Consensus 253 l~~~G-l~~i~~~~t 266 (287)
T COG4976 253 LAASG-LEVIAIEDT 266 (287)
T ss_pred HHhcC-ceEEEeecc
Confidence 99999 888777754
No 148
>PRK01581 speE spermidine synthase; Validated
Probab=92.94 E-value=0.25 Score=49.88 Aligned_cols=36 Identities=19% Similarity=0.093 Sum_probs=24.4
Q ss_pred CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644 64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS 114 (385)
Q Consensus 64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~ 114 (385)
+.+-+|+++|||+|.....++ +. ++..+|...|+-.
T Consensus 149 ~~PkrVLIIGgGdG~tlrelL--------k~-------~~v~~It~VEIDp 184 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVL--------KY-------ETVLHVDLVDLDG 184 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHH--------hc-------CCCCeEEEEeCCH
Confidence 356799999999998443332 11 1346788888854
No 149
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=92.87 E-value=0.15 Score=45.84 Aligned_cols=115 Identities=15% Similarity=0.111 Sum_probs=56.2
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|||||+|--++.+... . ..-+|+++|++. =...+-.++...... ....-.+-
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~--------~-------~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~------~~~~v~v~ 102 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKL--------F-------GAARVVLTDYNE-VLELLRRNIELNGSL------LDGRVSVR 102 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT----------------T-SEEEEEE-S--HHHHHHHHHHTT--------------EEE
T ss_pred CCceEEEECCccchhHHHHHhc--------c-------CCceEEEeccch-hhHHHHHHHHhcccc------ccccccCc
Confidence 4579999999999888877632 1 246899999975 222222232211000 00001111
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
..-++.......+.+.++|+|+.+=++.+=+. +..+++.-.+
T Consensus 103 ~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~~~~--------------------------------------~~~L~~tl~~ 144 (173)
T PF10294_consen 103 PLDWGDELDSDLLEPHSFDVILASDVLYDEEL--------------------------------------FEPLVRTLKR 144 (173)
T ss_dssp E--TTS-HHHHHHS-SSBSEEEEES--S-GGG--------------------------------------HHHHHHHHHH
T ss_pred EEEecCcccccccccccCCEEEEecccchHHH--------------------------------------HHHHHHHHHH
Confidence 11233322334456678888888877776222 2233345567
Q ss_pred hhccCCeEEEEeccC
Q 016644 225 EMKRCGSMFLVCLGR 239 (385)
Q Consensus 225 EL~pGG~lvl~~~g~ 239 (385)
-|+|+|.+++...-|
T Consensus 145 ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 145 LLKPNGKVLLAYKRR 159 (173)
T ss_dssp HBTT-TTEEEEEE-S
T ss_pred HhCCCCEEEEEeCEe
Confidence 789999976666555
No 150
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=92.66 E-value=1 Score=44.68 Aligned_cols=68 Identities=13% Similarity=0.216 Sum_probs=40.9
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
...+|+|||||+|.=|..+++.+.. .. ..+..+--|+...--....+.|.. ...+.+=
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~----~~-------~~~~Y~plDIS~~~L~~a~~~L~~-----------~~~p~l~ 133 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALER----QK-------KSVDYYALDVSRSELQRTLAELPL-----------GNFSHVR 133 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHh----cC-------CCceEEEEECCHHHHHHHHHhhhh-----------ccCCCeE
Confidence 4568999999999999988876631 11 236777778754333333333431 1123455
Q ss_pred eccccCcccc
Q 016644 145 AAGVPGSFYR 154 (385)
Q Consensus 145 ~~~vpgSFy~ 154 (385)
+.++-|+|..
T Consensus 134 v~~l~gdy~~ 143 (319)
T TIGR03439 134 CAGLLGTYDD 143 (319)
T ss_pred EEEEEecHHH
Confidence 5567777644
No 151
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=92.45 E-value=0.48 Score=44.75 Aligned_cols=36 Identities=14% Similarity=0.092 Sum_probs=26.2
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS 114 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~ 114 (385)
++-+|+|+||++|.-++.+...+ ++.-+|+.-|...
T Consensus 68 ~~~~vLEiGt~~G~s~l~la~~~--------------~~~g~v~tiD~d~ 103 (234)
T PLN02781 68 NAKNTLEIGVFTGYSLLTTALAL--------------PEDGRITAIDIDK 103 (234)
T ss_pred CCCEEEEecCcccHHHHHHHHhC--------------CCCCEEEEEECCH
Confidence 46789999999999888775322 1346788888743
No 152
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=92.38 E-value=0.9 Score=40.60 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=28.2
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN 115 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N 115 (385)
+..+++|+|||.|.-|..+++.. .+.-.|+--||...
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPM 59 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSST
T ss_pred cccEEEEcCCcccceeeeeeecc--------------cccceEEEEecccc
Confidence 56999999999999988876322 14578999999765
No 153
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=91.79 E-value=4.3 Score=39.30 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=29.5
Q ss_pred HHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCce
Q 016644 222 RSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSF 301 (385)
Q Consensus 222 Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF 301 (385)
-...|.||..|+++-...+.. . + -...+.++..++ ..|.+.||.+|+.+.+. | |
T Consensus 176 l~d~lapGS~L~ish~t~d~~---------p---~-~~~~~~~~~~~~----------~~~~~~Rs~~ei~~~f~--g-~ 229 (267)
T PF04672_consen 176 LRDALAPGSYLAISHATDDGA---------P---E-RAEALEAVYAQA----------GSPGRPRSREEIAAFFD--G-L 229 (267)
T ss_dssp HHCCS-TT-EEEEEEEB-TTS---------H---H-HHHHHHHHHHHC----------CS----B-HHHHHHCCT--T-S
T ss_pred HHHhCCCCceEEEEecCCCCC---------H---H-HHHHHHHHHHcC----------CCCceecCHHHHHHHcC--C-C
Confidence 357899999999999875311 0 1 123333332222 46999999999999876 4 6
Q ss_pred Ee
Q 016644 302 VI 303 (385)
Q Consensus 302 ~i 303 (385)
++
T Consensus 230 el 231 (267)
T PF04672_consen 230 EL 231 (267)
T ss_dssp EE
T ss_pred cc
Confidence 64
No 154
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=91.71 E-value=0.71 Score=50.66 Aligned_cols=114 Identities=11% Similarity=0.095 Sum_probs=63.0
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA 146 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~ 146 (385)
-+|+|+||++|..|+.+... .--+|+.-|+-..-....-+++... ..+..+--|+.
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~----------------Ga~~V~~vD~s~~al~~a~~N~~~n--------g~~~~~v~~i~ 595 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALG----------------GAKSTTTVDMSNTYLEWAERNFALN--------GLSGRQHRLIQ 595 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHC----------------CCCEEEEEeCCHHHHHHHHHHHHHh--------CCCccceEEEE
Confidence 58999999999999987621 1135888888544333333332110 00000111222
Q ss_pred cccCccc---cccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 016644 147 GVPGSFY---RRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 147 ~vpgSFy---~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra 223 (385)
++.+ .++ .+++|+|++. |+.+... + ....+ ....+|+...+..-.
T Consensus 596 ---~D~~~~l~~~--~~~fDlIilD---------PP~f~~~------~-------~~~~~-----~~~~~~y~~l~~~a~ 643 (702)
T PRK11783 596 ---ADCLAWLKEA--REQFDLIFID---------PPTFSNS------K-------RMEDS-----FDVQRDHVALIKDAK 643 (702)
T ss_pred ---ccHHHHHHHc--CCCcCEEEEC---------CCCCCCC------C-------ccchh-----hhHHHHHHHHHHHHH
Confidence 2432 232 5689999886 4433210 0 00001 123456777777778
Q ss_pred hhhccCCeEEEEe
Q 016644 224 KEMKRCGSMFLVC 236 (385)
Q Consensus 224 ~EL~pGG~lvl~~ 236 (385)
+-|+|||.++++.
T Consensus 644 ~lL~~gG~l~~~~ 656 (702)
T PRK11783 644 RLLRPGGTLYFSN 656 (702)
T ss_pred HHcCCCCEEEEEe
Confidence 8999999998765
No 155
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=91.51 E-value=1.1 Score=42.84 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHhhhccCCeEEEEe
Q 016644 213 TDLAAFLGARSKEMKRCGSMFLVC 236 (385)
Q Consensus 213 ~D~~~FL~~Ra~EL~pGG~lvl~~ 236 (385)
+.+.+|++.-++-|.|||+||+.=
T Consensus 186 ~GL~~ff~kis~ll~pgGiLvvEP 209 (288)
T KOG2899|consen 186 DGLRRFFRKISSLLHPGGILVVEP 209 (288)
T ss_pred HHHHHHHHHHHHhhCcCcEEEEcC
Confidence 358899999999999999998864
No 156
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=90.85 E-value=1.8 Score=44.18 Aligned_cols=27 Identities=4% Similarity=-0.092 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhccCCeEEEEe
Q 016644 210 QFQTDLAAFLGARSKEMKRCGSMFLVC 236 (385)
Q Consensus 210 q~~~D~~~FL~~Ra~EL~pGG~lvl~~ 236 (385)
...+++..++..-.+-|+|||.|+++.
T Consensus 313 ~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 313 GACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred HHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 345677788888889999999998655
No 157
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=90.55 E-value=1.2 Score=43.17 Aligned_cols=103 Identities=19% Similarity=0.272 Sum_probs=55.4
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchh--HhhhcCcCCc
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSME--ECLASDTHRS 142 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~--~~~~~~~~~~ 142 (385)
++++|--.|||||-=.-.+.=.+ .+.... ..+..++|+-.|+ |=..|-+.-...+...+ ......--.+
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l----~e~~~~--~~~~~~~I~AtDI---d~~~L~~A~~G~Y~~~~~~~~~~~~~~~r 166 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLL----LEALGK--LAGFRVKILATDI---DLSVLEKARAGIYPSRELLRGLPPELLRR 166 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHH----HHHhcc--ccCCceEEEEEEC---CHHHHHHHhcCCCChhHhhccCCHHHHhh
Confidence 58999999999997555443222 233311 1234699999998 55555443222111000 0000001135
Q ss_pred eeeccccCccc-------------ccc----CCCCcccEEEcccccccccC
Q 016644 143 YFAAGVPGSFY-------------RRL----FPTRSIDFFHSAFSLHWLSQ 176 (385)
Q Consensus 143 ~f~~~vpgSFy-------------~rL----fP~~Svd~~~Ss~alHWLS~ 176 (385)
||.-+.+|+|- ..| +..+-+|+|||=+.|=.+++
T Consensus 167 yF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~ 217 (268)
T COG1352 167 YFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDE 217 (268)
T ss_pred hEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCH
Confidence 66666555532 112 14456888888887777655
No 158
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=90.54 E-value=0.59 Score=45.68 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=26.5
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCC
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSN 115 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~N 115 (385)
.+++|..-|||||-=.-.+.= .+.+.... ..-.++|+-.|+-.+
T Consensus 115 ~~irIWSAgCStGEEpYSlAm----ll~e~~~~---~~~~~~I~atDIs~~ 158 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAM----TLADTLGT---APGRWKVFASDIDTE 158 (287)
T ss_pred CCEEEEEccccCCHHHHHHHH----HHHHhhcc---cCCCcEEEEEECCHH
Confidence 469999999999964433321 12222211 112589999999543
No 159
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=90.51 E-value=0.73 Score=45.92 Aligned_cols=103 Identities=17% Similarity=0.288 Sum_probs=60.3
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
--+|+|.|||||..|+.....= . ..|+--| ++.+...-. +..+.+....+ +
T Consensus 61 dK~VlDVGcGtGILS~F~akAG---------------A-~~V~aVe-----~S~ia~~a~-------~iv~~N~~~~i-i 111 (346)
T KOG1499|consen 61 DKTVLDVGCGTGILSMFAAKAG---------------A-RKVYAVE-----ASSIADFAR-------KIVKDNGLEDV-I 111 (346)
T ss_pred CCEEEEcCCCccHHHHHHHHhC---------------c-ceEEEEe-----chHHHHHHH-------HHHHhcCccce-E
Confidence 4689999999999998876321 1 2333222 222221100 00111112222 2
Q ss_pred ccccCcccccc-CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 146 AGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 146 ~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
-.+.|. -+.+ +|-..||+++|-|-=+||-. + .=|.+.|-+|-+
T Consensus 112 ~vi~gk-vEdi~LP~eKVDiIvSEWMGy~Ll~--E---------------------------------sMldsVl~ARdk 155 (346)
T KOG1499|consen 112 TVIKGK-VEDIELPVEKVDIIVSEWMGYFLLY--E---------------------------------SMLDSVLYARDK 155 (346)
T ss_pred EEeecc-eEEEecCccceeEEeehhhhHHHHH--h---------------------------------hhhhhhhhhhhh
Confidence 234444 3444 88899999999988888732 1 114556678999
Q ss_pred hhccCCeEE
Q 016644 225 EMKRCGSMF 233 (385)
Q Consensus 225 EL~pGG~lv 233 (385)
=|+|||.++
T Consensus 156 wL~~~G~i~ 164 (346)
T KOG1499|consen 156 WLKEGGLIY 164 (346)
T ss_pred ccCCCceEc
Confidence 999999984
No 160
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=89.96 E-value=0.48 Score=43.72 Aligned_cols=44 Identities=16% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCC
Q 016644 64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLP 113 (385)
Q Consensus 64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp 113 (385)
+++++|...|||||-=.-.+.= .+.+.... ...-.++++-+|+-
T Consensus 30 ~~~lrIWSagCStGeE~YSlAm----ll~e~~~~--~~~~~~~I~atDi~ 73 (196)
T PF01739_consen 30 GRPLRIWSAGCSTGEEPYSLAM----LLLELLPG--ALGWDFRILATDIS 73 (196)
T ss_dssp -S-EEEEETT-TTTHHHHHHHH----HHHHHH-S---TT-SEEEEEEES-
T ss_pred CCCeEEEECCCCCChhHHHHHH----HHHHHhcc--cCCCceEEEEEECC
Confidence 3689999999999964443321 12221111 11226999999984
No 161
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=89.88 E-value=2.8 Score=38.38 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh
Q 016644 43 SMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ 122 (385)
Q Consensus 43 ~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~ 122 (385)
.++..||+....+.. ..+--.+|+|||||--|-.+.+.+. |....+..|+ |-.. +-.
T Consensus 27 lLlDaLekd~~eL~~------~~~~i~lEIG~GSGvvstfL~~~i~--------------~~~~~latDi--Np~A-~~~ 83 (209)
T KOG3191|consen 27 LLLDALEKDAAELKG------HNPEICLEIGCGSGVVSTFLASVIG--------------PQALYLATDI--NPEA-LEA 83 (209)
T ss_pred HHHHHHHHHHHHHhh------cCceeEEEecCCcchHHHHHHHhcC--------------CCceEEEecC--CHHH-HHH
Confidence 467778887777753 1356679999999998877776552 4466777887 3221 111
Q ss_pred cCCCCCCchhHhhhcCcCCceeeccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHH
Q 016644 123 LLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEH 202 (385)
Q Consensus 123 ~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~ 202 (385)
++.. .+.+.+-+-.|-.++..-|-+ +++|+..= .|+.+.....+ | ...-
T Consensus 84 Tl~T-----------A~~n~~~~~~V~tdl~~~l~~-~~VDvLvf---------NPPYVpt~~~~------i----~~~~ 132 (209)
T KOG3191|consen 84 TLET-----------ARCNRVHIDVVRTDLLSGLRN-ESVDVLVF---------NPPYVPTSDEE------I----GDEG 132 (209)
T ss_pred HHHH-----------HHhcCCccceeehhHHhhhcc-CCccEEEE---------CCCcCcCCccc------c----hhHH
Confidence 1110 001111122344477766766 88887543 24443221110 0 0111
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhhhccCCeEEEEeccCC
Q 016644 203 TANAYK--KQFQTDLAAFLGARSKEMKRCGSMFLVCLGRT 240 (385)
Q Consensus 203 v~~ay~--~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~ 240 (385)
...||+ +--+.=..+||..--.-|.|-|.+.+...-++
T Consensus 133 i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N 172 (209)
T KOG3191|consen 133 IASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRAN 172 (209)
T ss_pred HHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhc
Confidence 345555 44555566788888888999999988887663
No 162
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=89.54 E-value=0.86 Score=43.04 Aligned_cols=114 Identities=15% Similarity=0.212 Sum_probs=67.1
Q ss_pred eEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeec
Q 016644 67 FALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAA 146 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~ 146 (385)
-.++|+|||.|.-.+.+. ++ .|+.-++--+.-.+=...+-+.+.. ..-+++.+.
T Consensus 50 pi~lEIGfG~G~~l~~~A--------~~-------nP~~nfiGiEi~~~~v~~~l~k~~~-----------~~l~Nlri~ 103 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMA--------KK-------NPEKNFLGIEIRVPGVAKALKKIKE-----------LGLKNLRLL 103 (227)
T ss_pred cEEEEECCCCCHHHHHHH--------HH-------CCCCCEEEEEEehHHHHHHHHHHHH-----------cCCCcEEEE
Confidence 467999999999766654 22 2666666555533222222222210 111133322
Q ss_pred -cccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 147 -GVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 147 -~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
.=.--+.+.++|++|+|=++=++.==|-.+-. +|.+|. . ..||..-++-
T Consensus 104 ~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH-----------~KRRl~----~---------------~~fl~~~a~~ 153 (227)
T COG0220 104 CGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRH-----------HKRRLT----Q---------------PEFLKLYARK 153 (227)
T ss_pred cCCHHHHHHhcCCCCCeeEEEEECCCCCCCccc-----------cccccC----C---------------HHHHHHHHHH
Confidence 22234567788888999999888777733322 233331 2 2466677999
Q ss_pred hccCCeEEEEe
Q 016644 226 MKRCGSMFLVC 236 (385)
Q Consensus 226 L~pGG~lvl~~ 236 (385)
|+|||.+.+.+
T Consensus 154 Lk~gG~l~~aT 164 (227)
T COG0220 154 LKPGGVLHFAT 164 (227)
T ss_pred ccCCCEEEEEe
Confidence 99999997765
No 163
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=88.87 E-value=0.67 Score=44.55 Aligned_cols=82 Identities=23% Similarity=0.291 Sum_probs=55.6
Q ss_pred CcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccC
Q 016644 160 RSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 160 ~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 239 (385)
...|.+.|+.+|-=.++-+.. +.+=|++-+.-|||||.|++.....
T Consensus 157 ~~~D~v~s~fcLE~a~~d~~~----------------------------------y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 157 PKFDCVISSFCLESACKDLDE----------------------------------YRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp SSEEEEEEESSHHHH-SSHHH----------------------------------HHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred cchhhhhhhHHHHHHcCCHHH----------------------------------HHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 369999999999877664432 2333566789999999999988654
Q ss_pred CCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHhcCceEecEEE
Q 016644 240 TSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEANGSFVINKLE 307 (385)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~~gsF~i~~le 307 (385)
. +.|. + | .-.+|...-+.+.|+++|+++| |+|...+
T Consensus 203 ~-----------t~Y~----------v--G--------~~~F~~l~l~ee~v~~al~~aG-~~i~~~~ 238 (256)
T PF01234_consen 203 S-----------TYYM----------V--G--------GHKFPCLPLNEEFVREALEEAG-FDIEDLE 238 (256)
T ss_dssp ------------SEEE----------E--T--------TEEEE---B-HHHHHHHHHHTT-EEEEEEE
T ss_pred c-----------eeEE----------E--C--------CEecccccCCHHHHHHHHHHcC-CEEEecc
Confidence 2 1110 0 1 1236888889999999999999 9998888
No 164
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=88.61 E-value=0.46 Score=47.18 Aligned_cols=80 Identities=8% Similarity=0.022 Sum_probs=42.9
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCce-
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSY- 143 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~- 143 (385)
...+|+|+|||+|.-..++.. +. +..+++..|+-..-....-+++.... .-...+
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~--------~~-------~~~~~~atDId~~Al~~A~~Nv~~Np---------~l~~~I~ 169 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGV--------HE-------YGWRFVGSDIDPQALASAQAIISANP---------GLNGAIR 169 (321)
T ss_pred CCceEEEecCCccHHHHHHHh--------hC-------CCCEEEEEeCCHHHHHHHHHHHHhcc---------CCcCcEE
Confidence 468999999999965555531 11 34678888883222222222221100 000112
Q ss_pred -eeccccCcccccc-CCCCcccEEEcc
Q 016644 144 -FAAGVPGSFYRRL-FPTRSIDFFHSA 168 (385)
Q Consensus 144 -f~~~vpgSFy~rL-fP~~Svd~~~Ss 168 (385)
.....++..+..+ .+.+.+|+++|+
T Consensus 170 ~~~~~~~~~i~~~i~~~~~~fDlivcN 196 (321)
T PRK11727 170 LRLQKDSKAIFKGIIHKNERFDATLCN 196 (321)
T ss_pred EEEccchhhhhhcccccCCceEEEEeC
Confidence 1223344445444 478899999996
No 165
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=87.19 E-value=1.8 Score=43.10 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=82.0
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
--.|+|.|||+|..|+..++.= --.||.-. .+++-.-.-+++... .. .--+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAG----------------A~~vYAvE-AS~MAqyA~~Lv~~N-----------~~-~~rI 228 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAG----------------AKKVYAVE-ASEMAQYARKLVASN-----------NL-ADRI 228 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhC----------------cceEEEEe-hhHHHHHHHHHHhcC-----------Cc-cceE
Confidence 3567999999999999876321 12333222 233333333333221 00 0114
Q ss_pred ccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016644 146 AGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKE 225 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~E 225 (385)
..+||- -+.+-.+..+|+++|- |-.- ----++=++++|.+| +=
T Consensus 229 tVI~GK-iEdieLPEk~DviISE---------PMG~--------------------------mL~NERMLEsYl~Ar-k~ 271 (517)
T KOG1500|consen 229 TVIPGK-IEDIELPEKVDVIISE---------PMGY--------------------------MLVNERMLESYLHAR-KW 271 (517)
T ss_pred EEccCc-cccccCchhccEEEec---------cchh--------------------------hhhhHHHHHHHHHHH-hh
Confidence 468888 7788777888988762 3110 001134578889999 99
Q ss_pred hccCCeEEEEeccCCCCCCCCCCC------CccchH------HHHHHHHHHHHHcCCccccccccccccccc
Q 016644 226 MKRCGSMFLVCLGRTSADPTDQGG------PGILFG------THFQDAWNDLVQEGLITGEKRDSFNIPVYA 285 (385)
Q Consensus 226 L~pGG~lvl~~~g~~~~~~~~~~~------~~~~~~------~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ 285 (385)
|+|.|.|+=+ .|+-...|-.+.. ..-+|| ..--..|..-+-+|.+.+--+|.|.+.+..
T Consensus 272 l~P~GkMfPT-~gdiHlAPFsDE~Ly~E~~nkAnFWyQq~fyGVdLt~L~g~a~~eYFrQPvVDtFD~Rilm 342 (517)
T KOG1500|consen 272 LKPNGKMFPT-VGDIHLAPFSDEQLYVEQFNKANFWYQQNFYGVDLTPLYGSAHQEYFRQPVVDTFDIRILM 342 (517)
T ss_pred cCCCCcccCc-ccceeecccchHHHHHHHHhhhhhhhhhccccccchhhhhhhhhhhhccccccccccceee
Confidence 9999999544 3443222222110 000111 001122333344566777777888777654
No 166
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=87.10 E-value=0.61 Score=45.78 Aligned_cols=33 Identities=21% Similarity=0.325 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHH
Q 016644 41 AQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 41 ~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~ 84 (385)
-..++.+|++.. .+.-+|+|+|||||-+++...
T Consensus 148 T~lcl~~l~~~~-----------~~g~~vLDvG~GSGILaiaA~ 180 (295)
T PF06325_consen 148 TRLCLELLEKYV-----------KPGKRVLDVGCGSGILAIAAA 180 (295)
T ss_dssp HHHHHHHHHHHS-----------STTSEEEEES-TTSHHHHHHH
T ss_pred HHHHHHHHHHhc-----------cCCCEEEEeCCcHHHHHHHHH
Confidence 345666666542 123599999999999998875
No 167
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=86.90 E-value=0.61 Score=44.07 Aligned_cols=38 Identities=18% Similarity=0.127 Sum_probs=27.7
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchH
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFN 118 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn 118 (385)
+..+|+|+|||+|..|..+.+. .--+|+--|.-.++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~----------------ga~~v~avD~~~~~l~ 112 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK----------------GAKEVYGVDVGYNQLA 112 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc----------------CCCEEEEEeCCHHHHH
Confidence 3468999999999999877621 1257888888665444
No 168
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=86.38 E-value=1.1 Score=38.56 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCC
Q 016644 42 QSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDL 112 (385)
Q Consensus 42 ~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDL 112 (385)
.++..++...++.... ..++.+|+|+|||.|..|+.+...+ .. . .+..+|+--|.
T Consensus 7 ~~~~~~i~~~~~~~~~-----~~~~~~vvD~GsG~GyLs~~La~~l-~~---~-------~~~~~v~~iD~ 61 (141)
T PF13679_consen 7 ERMAELIDSLCDSVGE-----SKRCITVVDLGSGKGYLSRALAHLL-CN---S-------SPNLRVLGIDC 61 (141)
T ss_pred HHHHHHHHHHHHHhhc-----cCCCCEEEEeCCChhHHHHHHHHHH-Hh---c-------CCCCeEEEEEC
Confidence 4455555555544211 2357899999999999999987422 11 1 14577787776
No 169
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=86.20 E-value=1.1 Score=44.13 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.8
Q ss_pred ceEEeeeCCCCCcchHHHH
Q 016644 66 PFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~ 84 (385)
..+|+|+|||+|..++.+.
T Consensus 174 ~~~VLDl~cG~G~~sl~la 192 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCA 192 (315)
T ss_pred CCEEEEccCCCCHHHHHHH
Confidence 4689999999999998876
No 170
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=85.86 E-value=8.6 Score=36.90 Aligned_cols=125 Identities=15% Similarity=0.181 Sum_probs=76.5
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHh-cCCCCCCchhHhhhcCcCCcee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQ-LLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~-~l~~~~~~~~~~~~~~~~~~~f 144 (385)
-.+|+|.|.|||..|..+...+ .|+-+|+--|.= -||-...+ ++..+ . ..+.
T Consensus 95 g~rVlEAGtGSG~lt~~La~~v--------------g~~G~v~tyE~r-~d~~k~A~~Nl~~~--~---------l~d~- 147 (256)
T COG2519 95 GSRVLEAGTGSGALTAYLARAV--------------GPEGHVTTYEIR-EDFAKTARENLSEF--G---------LGDR- 147 (256)
T ss_pred CCEEEEcccCchHHHHHHHHhh--------------CCCceEEEEEec-HHHHHHHHHHHHHh--c---------cccc-
Confidence 3799999999999999886433 144555554543 26655433 33221 0 0110
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
+.-.-|+..+-.++. .+|.+|- +.|.+- ..|..-++
T Consensus 148 v~~~~~Dv~~~~~~~-~vDav~L--------Dmp~PW-----------------------------------~~le~~~~ 183 (256)
T COG2519 148 VTLKLGDVREGIDEE-DVDAVFL--------DLPDPW-----------------------------------NVLEHVSD 183 (256)
T ss_pred eEEEecccccccccc-ccCEEEE--------cCCChH-----------------------------------HHHHHHHH
Confidence 111116777777777 8888763 445432 23355789
Q ss_pred hhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCccccccc
Q 016644 225 EMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRD 277 (385)
Q Consensus 225 EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d 277 (385)
.|+|||++++..+.. +.+...+..|-+.|.++.+..+
T Consensus 184 ~Lkpgg~~~~y~P~v----------------eQv~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 184 ALKPGGVVVVYSPTV----------------EQVEKTVEALRERGFVDIEAVE 220 (256)
T ss_pred HhCCCcEEEEEcCCH----------------HHHHHHHHHHHhcCccchhhhe
Confidence 999999998887554 3466666667666776655443
No 171
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=84.84 E-value=2.1 Score=41.98 Aligned_cols=20 Identities=20% Similarity=0.272 Sum_probs=17.5
Q ss_pred ceEEeeeCCCCCcchHHHHH
Q 016644 66 PFALADLGCSCGNNTLYIVD 85 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~ 85 (385)
.-+|+|+|||+|..|..++.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~ 56 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQ 56 (294)
T ss_pred cCEEEEecCchHHHHHHHHH
Confidence 46899999999999988875
No 172
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=84.38 E-value=1.9 Score=44.86 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=16.8
Q ss_pred ceEEeeeCCCCCcchHHHHHHH
Q 016644 66 PFALADLGCSCGNNTLYIVDVI 87 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~i 87 (385)
..+|+|+|||+|+.+...++..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~ 208 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAG 208 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTT
T ss_pred ceEEEEeCCCccHHHHHHHHHH
Confidence 5789999999999998887543
No 173
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.04 E-value=0.59 Score=42.88 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.6
Q ss_pred CceEEeeeCCCCCcchHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~ 84 (385)
.--+|+|+|||||..++...
T Consensus 45 ~g~~V~DlG~GTG~La~ga~ 64 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAA 64 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHH
Confidence 34679999999999998764
No 174
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=83.96 E-value=2.9 Score=39.91 Aligned_cols=20 Identities=15% Similarity=0.067 Sum_probs=17.5
Q ss_pred ceEEeeeCCCCCcchHHHHH
Q 016644 66 PFALADLGCSCGNNTLYIVD 85 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~ 85 (385)
.-+|+|+|||+|..|..+..
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~ 49 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAK 49 (258)
T ss_pred cCeEEEEeCccCHHHHHHHH
Confidence 46899999999999998873
No 175
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=83.03 E-value=1.4 Score=41.90 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=17.8
Q ss_pred CceEEeeeCCCCCcchHHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIVD 85 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~ 85 (385)
+.-+|+|+|||+|..|..+..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~ 49 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLK 49 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHH
Confidence 347899999999999988863
No 176
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=82.57 E-value=8.9 Score=40.15 Aligned_cols=125 Identities=10% Similarity=0.090 Sum_probs=67.9
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
+..+|+|++||.|.=|..+.+.+ . ..-.|+-||.-.+-...|-.++..+ ...++-
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l--------~------~~g~lvA~D~~~~R~~~L~~nl~r~-----------G~~nv~ 167 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALM--------N------NQGAIVANEYSASRVKVLHANISRC-----------GVSNVA 167 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHc--------C------CCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCeEE
Confidence 34789999999999998886433 1 2347888998665566665555421 112221
Q ss_pred ec-cccCccccccCCCCcccEEE----cccccccccCCchhhhcccccccCCCceEEcCCCHH-HHHHHHHHHHHHHHHH
Q 016644 145 AA-GVPGSFYRRLFPTRSIDFFH----SAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEH-TANAYKKQFQTDLAAF 218 (385)
Q Consensus 145 ~~-~vpgSFy~rLfP~~Svd~~~----Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~-v~~ay~~q~~~D~~~F 218 (385)
+. .-+.. +...+| +.+|.|. ||-.=.|- +.|..... -+++ +.+.-..| ..+
T Consensus 168 v~~~D~~~-~~~~~~-~~fD~ILvDaPCSG~G~~r-k~p~~~~~---------------~s~~~v~~l~~lQ-----~~i 224 (470)
T PRK11933 168 LTHFDGRV-FGAALP-ETFDAILLDAPCSGEGTVR-KDPDALKN---------------WSPESNLEIAATQ-----REL 224 (470)
T ss_pred EEeCchhh-hhhhch-hhcCeEEEcCCCCCCcccc-cCHHHhhh---------------CCHHHHHHHHHHH-----HHH
Confidence 11 11111 112222 3566665 33333332 22333211 1223 33322223 567
Q ss_pred HHHHHhhhccCCeEEEEec
Q 016644 219 LGARSKEMKRCGSMFLVCL 237 (385)
Q Consensus 219 L~~Ra~EL~pGG~lvl~~~ 237 (385)
|..-++-|+|||+||-++-
T Consensus 225 L~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 225 IESAFHALKPGGTLVYSTC 243 (470)
T ss_pred HHHHHHHcCCCcEEEEECC
Confidence 8888899999999977663
No 177
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=79.93 E-value=12 Score=36.16 Aligned_cols=132 Identities=16% Similarity=0.210 Sum_probs=63.9
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCcee
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYF 144 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f 144 (385)
.|.+|+|+|||.|.-+..+ . +.+. ...+++.-|.. .....+-+.|-.-... ....
T Consensus 33 ~P~~vLD~GsGpGta~wAa-~-------~~~~------~~~~~~~vd~s-~~~~~l~~~l~~~~~~---------~~~~- 87 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAA-R-------EVWP------SLKEYTCVDRS-PEMLELAKRLLRAGPN---------NRNA- 87 (274)
T ss_pred CCceEEEecCChHHHHHHH-H-------HHhc------CceeeeeecCC-HHHHHHHHHHHhcccc---------cccc-
Confidence 5789999999999744333 2 2232 12566677753 3334443333210000 0000
Q ss_pred eccccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCC---ceEEcCCCHHHHHHHHHHHHHHHHHHHHH
Q 016644 145 AAGVPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKG---KVYIHGANEHTANAYKKQFQTDLAAFLGA 221 (385)
Q Consensus 145 ~~~vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg---~i~~~~~~~~v~~ay~~q~~~D~~~FL~~ 221 (385)
.....++....+-..-|+|+++++|-=|.. ....+-....|++- -|.|-..+|. .+...+.+
T Consensus 88 --~~~~~~~~~~~~~~~~DLvi~s~~L~EL~~--~~r~~lv~~LW~~~~~~LVlVEpGt~~-----------Gf~~i~~a 152 (274)
T PF09243_consen 88 --EWRRVLYRDFLPFPPDDLVIASYVLNELPS--AARAELVRSLWNKTAPVLVLVEPGTPA-----------GFRRIAEA 152 (274)
T ss_pred --hhhhhhhcccccCCCCcEEEEehhhhcCCc--hHHHHHHHHHHHhccCcEEEEcCCChH-----------HHHHHHHH
Confidence 112234433333333399999999876654 21111112222221 2334444443 44555566
Q ss_pred HHhhhccCCeEEEEe
Q 016644 222 RSKEMKRCGSMFLVC 236 (385)
Q Consensus 222 Ra~EL~pGG~lvl~~ 236 (385)
|..=+..|+.++.=+
T Consensus 153 R~~l~~~~~~v~APC 167 (274)
T PF09243_consen 153 RDQLLEKGAHVVAPC 167 (274)
T ss_pred HHHHhhCCCceECCC
Confidence 766677777665433
No 178
>PLN02823 spermine synthase
Probab=79.10 E-value=7.3 Score=38.98 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=15.5
Q ss_pred CceEEeeeCCCCCcchHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~ 84 (385)
.+-+|+.+|+|.|.....++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l 122 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVL 122 (336)
T ss_pred CCCEEEEECCCchHHHHHHH
Confidence 46789999999997665444
No 179
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=78.78 E-value=6.6 Score=31.18 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=16.8
Q ss_pred HHHHhhhccCCeEEEEeccCC
Q 016644 220 GARSKEMKRCGSMFLVCLGRT 240 (385)
Q Consensus 220 ~~Ra~EL~pGG~lvl~~~g~~ 240 (385)
....+-|+|||.+++......
T Consensus 139 ~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 139 RELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred HHHHHhcCCCcEEEEEeccCC
Confidence 446777999999999887764
No 180
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=77.68 E-value=3.4 Score=40.28 Aligned_cols=40 Identities=13% Similarity=0.227 Sum_probs=27.6
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCC
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDL 112 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDL 112 (385)
...+|+|-.||+|..-+..+..+.+. +... ++.+++-.|+
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~-~~~~-------~~~~i~G~ei 85 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEK-RNKI-------KEINIYGIEI 85 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTC-HHHH-------CCEEEEEEES
T ss_pred ccceeechhhhHHHHHHHHHHhhccc-cccc-------ccceeEeecC
Confidence 45789999999999877777555333 1111 5689998888
No 181
>PRK04148 hypothetical protein; Provisional
Probab=77.34 E-value=4.8 Score=34.93 Aligned_cols=20 Identities=10% Similarity=-0.061 Sum_probs=14.9
Q ss_pred CceEEeeeCCCCCc-chHHHH
Q 016644 65 IPFALADLGCSCGN-NTLYIV 84 (385)
Q Consensus 65 ~~~~IaDlGCs~G~-NSl~~~ 84 (385)
+..+|+|+|||+|. .+..+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~ 36 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLK 36 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHH
Confidence 45789999999997 554443
No 182
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=75.00 E-value=3.5 Score=42.60 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=16.5
Q ss_pred ceEEeeeCCCCCcchHHHH
Q 016644 66 PFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~ 84 (385)
..+|+|+|||+|..|+.+.
T Consensus 298 ~~~VLDlgcGtG~~sl~la 316 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLA 316 (443)
T ss_pred CCEEEEEeccCCHHHHHHH
Confidence 3689999999999888775
No 183
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=74.77 E-value=10 Score=36.20 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=16.4
Q ss_pred ceEEeeeCCCCCcchHHHHHHH
Q 016644 66 PFALADLGCSCGNNTLYIVDVI 87 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~i 87 (385)
-.+|+|-|.|||..|..+...+
T Consensus 41 G~~VlEaGtGSG~lt~~l~r~v 62 (247)
T PF08704_consen 41 GSRVLEAGTGSGSLTHALARAV 62 (247)
T ss_dssp T-EEEEE--TTSHHHHHHHHHH
T ss_pred CCEEEEecCCcHHHHHHHHHHh
Confidence 4799999999999999997555
No 184
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=73.15 E-value=14 Score=37.20 Aligned_cols=18 Identities=39% Similarity=0.457 Sum_probs=15.7
Q ss_pred eEEeeeCCCCCcchHHHH
Q 016644 67 FALADLGCSCGNNTLYIV 84 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~ 84 (385)
.+++|++||+|..|+.+.
T Consensus 208 ~~vLDl~~G~G~~sl~la 225 (362)
T PRK05031 208 GDLLELYCGNGNFTLALA 225 (362)
T ss_pred CeEEEEeccccHHHHHHH
Confidence 469999999999999665
No 185
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=72.37 E-value=4.6 Score=37.23 Aligned_cols=18 Identities=17% Similarity=-0.036 Sum_probs=15.5
Q ss_pred eEEeeeCCCCCcchHHHH
Q 016644 67 FALADLGCSCGNNTLYIV 84 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~ 84 (385)
.+|+|+|||+|..++.++
T Consensus 55 ~~vLDl~~GsG~l~l~~l 72 (199)
T PRK10909 55 ARCLDCFAGSGALGLEAL 72 (199)
T ss_pred CEEEEcCCCccHHHHHHH
Confidence 589999999999888654
No 186
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=72.23 E-value=7.8 Score=37.37 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=69.7
Q ss_pred ceEEeeeCCCCCcchHHHHHHH------------HHHHHHHHHhcCCCCCceeEEecCCCCCchHHHH------hcCCCC
Q 016644 66 PFALADLGCSCGNNTLYIVDVI------------IKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLF------QLLPPI 127 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~i------------i~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF------~~l~~~ 127 (385)
.-+|+|+|+|.|..|..+++.. +..++++.. ....++|+..|--.=||..++ .+||=.
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~----~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA----PYDNLTVINGDALKFDFPSLAQPYKVVANLPYN 106 (259)
T ss_pred CCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc----cccceEEEeCchhcCcchhhcCCCEEEEcCCCc
Confidence 5789999999999999998753 445555442 235699999998877888653 345422
Q ss_pred CCch--hHhhhcCcCCceeeccccCcccccc-CCCCcccEEEcccccccccCC
Q 016644 128 GSSM--EECLASDTHRSYFAAGVPGSFYRRL-FPTRSIDFFHSAFSLHWLSQV 177 (385)
Q Consensus 128 ~~~~--~~~~~~~~~~~~f~~~vpgSFy~rL-fP~~Svd~~~Ss~alHWLS~~ 177 (385)
-+.+ -...+......-.+.++-+-|-+|+ .+++|=+.+--+-..||.-++
T Consensus 107 Isspii~kll~~~~~~~~~v~M~QkEva~Rl~A~pgsk~Yg~LsV~~q~~~~v 159 (259)
T COG0030 107 ISSPILFKLLEEKFIIQDMVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYADV 159 (259)
T ss_pred ccHHHHHHHHhccCccceEEEEeHHHHHHHHhCCCCCcccchhhhhhhheEEE
Confidence 1111 1222222122234556777777888 677888888777777776553
No 187
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=71.85 E-value=11 Score=36.42 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=17.6
Q ss_pred CceEEeeeCCCCCcchHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~ 84 (385)
+..+++|+|.|.|.-|..+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~ 113 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLA 113 (265)
T ss_pred cCCceEEecCCCcHHHHHHH
Confidence 56789999999999998875
No 188
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=71.32 E-value=5.2 Score=40.46 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=41.3
Q ss_pred ccCccccccCCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 016644 148 VPGSFYRRLFPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMK 227 (385)
Q Consensus 148 vpgSFy~rLfP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~ 227 (385)
+-+.|-...|+++++|++.+.-+.+.+++.-. +|+++ .+.++
T Consensus 165 ~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~--------------------------~y~Ei------------~rv~k 206 (364)
T KOG1269|consen 165 VVADFGKMPFEDNTFDGVRFLEVVCHAPDLEK--------------------------VYAEI------------YRVLK 206 (364)
T ss_pred ehhhhhcCCCCccccCcEEEEeecccCCcHHH--------------------------HHHHH------------hcccC
Confidence 44578888899999999999988888665332 23333 56699
Q ss_pred cCCeEEEEeccCC
Q 016644 228 RCGSMFLVCLGRT 240 (385)
Q Consensus 228 pGG~lvl~~~g~~ 240 (385)
|||+.+..-..+.
T Consensus 207 pGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 207 PGGLFIVKEWIKT 219 (364)
T ss_pred CCceEEeHHHHHh
Confidence 9999998776663
No 189
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=71.20 E-value=3.4 Score=34.60 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHhhhccCCeEEEEe
Q 016644 212 QTDLAAFLGARSKEMKRCGSMFLVC 236 (385)
Q Consensus 212 ~~D~~~FL~~Ra~EL~pGG~lvl~~ 236 (385)
...+.+|++..+.-|+|||+|++.-
T Consensus 20 D~Gl~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 20 DEGLKRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEE-
T ss_pred CHHHHHHHHHHHHhhCCCCEEEEeC
Confidence 3468889999999999999999886
No 190
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=70.58 E-value=19 Score=33.79 Aligned_cols=136 Identities=18% Similarity=0.244 Sum_probs=80.8
Q ss_pred hhhhcccCCCCCchhHHhHHHHHH------HHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHH
Q 016644 16 EMILSMKGGNGEASYANNSQAQAI------HAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIK 89 (385)
Q Consensus 16 ~~~~~m~gg~g~~sY~~nS~~Q~~------~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~ 89 (385)
+.-+...||- ..|-..|..=+. ...-+..+|.+...... .....++++|+||=+..|.....
T Consensus 3 ~~ei~~~GGl--~~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~-----~~~~~lrlLEVGals~~N~~s~~----- 70 (219)
T PF11968_consen 3 DAEIEALGGL--EAYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPK-----NGRPKLRLLEVGALSTDNACSTS----- 70 (219)
T ss_pred HHHHHHccCH--HHHHHHHHhcCCCCCCCchhHHHHHHhhhhccccc-----cccccceEEeecccCCCCccccc-----
Confidence 3345556764 677766665211 12334444444332111 12245999999999888876542
Q ss_pred HHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCccccccC---CCCcccEEE
Q 016644 90 HISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSFYRRLF---PTRSIDFFH 166 (385)
Q Consensus 90 ~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSFy~rLf---P~~Svd~~~ 166 (385)
+-+.|.--||-+.+ +.| .--+|.++=+ +++++|+|.
T Consensus 71 -------------~~fdvt~IDLns~~------------------------~~I----~qqDFm~rplp~~~~e~FdvIs 109 (219)
T PF11968_consen 71 -------------GWFDVTRIDLNSQH------------------------PGI----LQQDFMERPLPKNESEKFDVIS 109 (219)
T ss_pred -------------CceeeEEeecCCCC------------------------CCc----eeeccccCCCCCCcccceeEEE
Confidence 34667777873311 111 1116776644 488999999
Q ss_pred cccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCe-----EEEEeccC
Q 016644 167 SAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGS-----MFLVCLGR 239 (385)
Q Consensus 167 Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~-----lvl~~~g~ 239 (385)
+|-.|..+ |.+.. + -.-|+.-.+=|+|+|. |+++++-.
T Consensus 110 ~SLVLNfV---P~p~~--------R------------------------G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~ 152 (219)
T PF11968_consen 110 LSLVLNFV---PDPKQ--------R------------------------GEMLRRAHKFLKPPGLSLFPSLFLVLPLP 152 (219)
T ss_pred EEEEEeeC---CCHHH--------H------------------------HHHHHHHHHHhCCCCccCcceEEEEeCch
Confidence 99999885 53321 0 1123555678999999 98888655
No 191
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=70.11 E-value=3.1 Score=36.81 Aligned_cols=34 Identities=38% Similarity=0.599 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHH
Q 016644 41 AQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYI 83 (385)
Q Consensus 41 ~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~ 83 (385)
+..++..+.+....+ +...|+|||||+|-.++..
T Consensus 33 AasM~~~Ih~Tygdi---------Egkkl~DLgcgcGmLs~a~ 66 (185)
T KOG3420|consen 33 AASMLYTIHNTYGDI---------EGKKLKDLGCGCGMLSIAF 66 (185)
T ss_pred HHHHHHHHHhhhccc---------cCcchhhhcCchhhhHHHh
Confidence 344555555544322 4578999999999988443
No 192
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=69.04 E-value=53 Score=33.32 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=45.0
Q ss_pred HHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHh
Q 016644 218 FLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEA 297 (385)
Q Consensus 218 FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~ 297 (385)
.+..-.+-+.|||.||++=.|-. .| | +.|..|=..+++.|..+.|. +|+.-+..|++-+-+-+|.-
T Consensus 207 ~ie~lw~l~~~gg~lVivErGtp---------~G--f-~~I~rAR~~ll~~~~~~~e~--~~~ahiiAPCPH~~~CPl~v 272 (484)
T COG5459 207 NIERLWNLLAPGGHLVIVERGTP---------AG--F-ERILRARQILLAPGNFPDEF--NYFAHIIAPCPHQRKCPLQV 272 (484)
T ss_pred HHHHHHHhccCCCeEEEEeCCCc---------hh--H-HHHHHHHHHHhcCCCCcccc--ccceeeeccCCCCCCCCccC
Confidence 34556788999999999887753 12 2 56777777788888776554 56666666776665555543
No 193
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=68.18 E-value=6.9 Score=40.17 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.8
Q ss_pred ceEEeeeCCCCCcchHHHH
Q 016644 66 PFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~ 84 (385)
..+|+|+|||+|..|+.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 4689999999999999875
No 194
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=67.95 E-value=7.3 Score=39.39 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=16.2
Q ss_pred eEEeeeCCCCCcchHHHH
Q 016644 67 FALADLGCSCGNNTLYIV 84 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~ 84 (385)
.+|+|+|||+|..|+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la 252 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCA 252 (374)
T ss_pred CEEEEccCCccHHHHHHh
Confidence 589999999999998886
No 195
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=66.66 E-value=7.2 Score=39.70 Aligned_cols=62 Identities=8% Similarity=-0.044 Sum_probs=42.5
Q ss_pred CCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCce
Q 016644 26 GEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEF 105 (385)
Q Consensus 26 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~ 105 (385)
+...|+-|...-+.....+...+... ....+|+|++||+|..++.+.... +.-
T Consensus 30 ~~vFyqp~~~~nrdl~~~v~~~~~~~------------~~~~~vLDl~aGsG~~~l~~a~~~---------------~~~ 82 (382)
T PRK04338 30 APVFYNPRMELNRDISVLVLRAFGPK------------LPRESVLDALSASGIRGIRYALET---------------GVE 82 (382)
T ss_pred CCeeeCccccchhhHHHHHHHHHHhh------------cCCCEEEECCCcccHHHHHHHHHC---------------CCC
Confidence 45789988877776666555554310 013589999999999999886332 224
Q ss_pred eEEecCCCC
Q 016644 106 SAFFSDLPS 114 (385)
Q Consensus 106 qv~~nDLp~ 114 (385)
+|+.+|.-.
T Consensus 83 ~V~a~Din~ 91 (382)
T PRK04338 83 KVTLNDINP 91 (382)
T ss_pred EEEEEeCCH
Confidence 789999843
No 196
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=65.68 E-value=8.5 Score=35.45 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=13.9
Q ss_pred eEEeeeCCCCCcchHHHH
Q 016644 67 FALADLGCSCGNNTLYIV 84 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~ 84 (385)
-+|+|||||-|+.-..+.
T Consensus 69 ~~VlDLGtGNG~~L~~L~ 86 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLA 86 (227)
T ss_pred cceeeccCCchHHHHHHH
Confidence 399999999998555443
No 197
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=65.39 E-value=7.1 Score=37.16 Aligned_cols=37 Identities=16% Similarity=0.120 Sum_probs=27.1
Q ss_pred CCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCc
Q 016644 64 TIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSND 116 (385)
Q Consensus 64 ~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~ND 116 (385)
.+.-+++|+|+|||..|.-+++. - --.||--|.-.|.
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~--------g--------Ak~VyavDVG~~Q 114 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQR--------G--------AKHVYAVDVGYGQ 114 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHc--------C--------CcEEEEEEccCCc
Confidence 45678999999999999877632 1 1567877876554
No 198
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=64.67 E-value=14 Score=35.37 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=17.8
Q ss_pred CceEEeeeCCCCCcchHHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIVD 85 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~ 85 (385)
++-+|+++|+++|.-|+.+..
T Consensus 79 ~ak~iLEiGT~~GySal~la~ 99 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATAL 99 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHh
Confidence 467999999999998887763
No 199
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=60.42 E-value=12 Score=37.54 Aligned_cols=17 Identities=35% Similarity=0.565 Sum_probs=15.1
Q ss_pred EEeeeCCCCCcchHHHH
Q 016644 68 ALADLGCSCGNNTLYIV 84 (385)
Q Consensus 68 ~IaDlGCs~G~NSl~~~ 84 (385)
+|+|+|||+|..|+.+.
T Consensus 200 ~vlDl~~G~G~~sl~la 216 (353)
T TIGR02143 200 DLLELYCGNGNFSLALA 216 (353)
T ss_pred cEEEEeccccHHHHHHH
Confidence 69999999999999664
No 200
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=60.21 E-value=13 Score=33.91 Aligned_cols=42 Identities=17% Similarity=-0.035 Sum_probs=27.9
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhc
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQL 123 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~ 123 (385)
..+++|++||+|..++.+.+. . . -.|++.|.-..-...+-++
T Consensus 50 g~~vLDLfaGsG~lglea~sr--------g-------a-~~v~~vE~~~~a~~~~~~N 91 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSR--------G-------A-KVAFLEEDDRKANQTLKEN 91 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhC--------C-------C-CEEEEEeCCHHHHHHHHHH
Confidence 367999999999999888732 1 2 3678888754333333333
No 201
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=56.68 E-value=38 Score=32.89 Aligned_cols=64 Identities=28% Similarity=0.473 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHH
Q 016644 213 TDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFK 292 (385)
Q Consensus 213 ~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~ 292 (385)
+++-.+|..-.+-||||| +..++|+- .|+ .+ ++ + +. +-...-.|.||++
T Consensus 179 ~Ni~~Yi~tI~~lLkpgG--~WIN~GPL------------lyh--~~----~~---~-~~-------~~~sveLs~eEi~ 227 (270)
T PF07942_consen 179 ENIIEYIETIEHLLKPGG--YWINFGPL------------LYH--FE----PM---S-IP-------NEMSVELSLEEIK 227 (270)
T ss_pred HHHHHHHHHHHHHhccCC--EEEecCCc------------ccc--CC----CC---C-CC-------CCcccCCCHHHHH
Confidence 456667788899999999 55677762 111 00 00 0 00 0011456899999
Q ss_pred HHHHhcCceEecEEEE
Q 016644 293 EVVEANGSFVINKLEV 308 (385)
Q Consensus 293 ~~le~~gsF~i~~le~ 308 (385)
+++++-| |++.+-+.
T Consensus 228 ~l~~~~G-F~~~~~~~ 242 (270)
T PF07942_consen 228 ELIEKLG-FEIEKEES 242 (270)
T ss_pred HHHHHCC-CEEEEEEE
Confidence 9999999 99877655
No 202
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=54.93 E-value=7.1 Score=32.68 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=15.9
Q ss_pred CceEEeeeCCCCCcchHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~ 84 (385)
++...+|+|||-|-..-.+.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~ 77 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILN 77 (112)
T ss_pred CCCceEEccCCchHHHHHHH
Confidence 46788999999998766664
No 203
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=54.70 E-value=24 Score=33.40 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=18.2
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHH
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIK 89 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~ 89 (385)
-.+|+-||.|+|. |..-++.|+.
T Consensus 74 gskVLYLGAasGT-TVSHvSDIvg 96 (229)
T PF01269_consen 74 GSKVLYLGAASGT-TVSHVSDIVG 96 (229)
T ss_dssp T-EEEEETTTTSH-HHHHHHHHHT
T ss_pred CCEEEEecccCCC-ccchhhhccC
Confidence 4799999999998 7777788864
No 204
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=54.67 E-value=14 Score=35.24 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=37.0
Q ss_pred cccCcccccc--CCCCcccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 147 GVPGSFYRRL--FPTRSIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 147 ~vpgSFy~rL--fP~~Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
.+.|+-|+-+ |+++|+|+++ .+.|..-. ..+.|++.|=+. -++
T Consensus 189 iilGD~~e~V~~~~D~sfDaIi--------HDPPRfS~--------------------AgeLYseefY~E-------l~R 233 (287)
T COG2521 189 IILGDAYEVVKDFDDESFDAII--------HDPPRFSL--------------------AGELYSEEFYRE-------LYR 233 (287)
T ss_pred EecccHHHHHhcCCccccceEe--------eCCCccch--------------------hhhHhHHHHHHH-------HHH
Confidence 4667778776 9999999985 34444321 124555443333 478
Q ss_pred hhccCCeEEEEecc
Q 016644 225 EMKRCGSMFLVCLG 238 (385)
Q Consensus 225 EL~pGG~lvl~~~g 238 (385)
-|+|||+|+=-...
T Consensus 234 iLkrgGrlFHYvG~ 247 (287)
T COG2521 234 ILKRGGRLFHYVGN 247 (287)
T ss_pred HcCcCCcEEEEeCC
Confidence 89999999765543
No 205
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=54.05 E-value=37 Score=32.36 Aligned_cols=22 Identities=14% Similarity=0.043 Sum_probs=18.8
Q ss_pred CceEEeeeCCCCCcchHHHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIVDV 86 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ 86 (385)
+...|+|+|.|.|..|..+.+.
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~ 51 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKR 51 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhcc
Confidence 4588999999999999998743
No 206
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=52.92 E-value=52 Score=30.48 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=13.1
Q ss_pred CceEEeeeCCCCCcchHHH
Q 016644 65 IPFALADLGCSCGNNTLYI 83 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~ 83 (385)
+.-+++|||||.|.-.+.+
T Consensus 42 ~~dvF~DlGSG~G~~v~~a 60 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQA 60 (205)
T ss_dssp TT-EEEEES-TTSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 3478999999999965544
No 207
>PRK11524 putative methyltransferase; Provisional
Probab=52.66 E-value=22 Score=34.43 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhccCCeEEEEe
Q 016644 215 LAAFLGARSKEMKRCGSMFLVC 236 (385)
Q Consensus 215 ~~~FL~~Ra~EL~pGG~lvl~~ 236 (385)
+..+|..-.+-|+|||.|++..
T Consensus 59 l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 59 LYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred HHHHHHHHHHHhCCCcEEEEEc
Confidence 5678888899999999999864
No 208
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=50.29 E-value=7.9 Score=36.16 Aligned_cols=18 Identities=28% Similarity=0.660 Sum_probs=14.5
Q ss_pred ceEEeeeCCCCCcchHHH
Q 016644 66 PFALADLGCSCGNNTLYI 83 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~ 83 (385)
-.-+||+|||=|...+.+
T Consensus 61 kvefaDIGCGyGGLlv~L 78 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKL 78 (249)
T ss_pred cceEEeeccCccchhhhc
Confidence 377999999999876554
No 209
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=49.67 E-value=16 Score=34.99 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=25.1
Q ss_pred CCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCC
Q 016644 60 PPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLP 113 (385)
Q Consensus 60 ~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp 113 (385)
+...+.+-+|+|+|||-=|.++..+. .+|...++-.|.-
T Consensus 100 f~~~~~p~sVlDigCGlNPlalp~~~---------------~~~~a~Y~a~DID 138 (251)
T PF07091_consen 100 FGRIPPPDSVLDIGCGLNPLALPWMP---------------EAPGATYIAYDID 138 (251)
T ss_dssp CCCS---SEEEEET-TTCHHHHHTTT---------------SSTT-EEEEEESB
T ss_pred HhcCCCCchhhhhhccCCceehhhcc---------------cCCCcEEEEEeCC
Confidence 33345689999999999998887771 2355788888874
No 210
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=49.15 E-value=36 Score=31.99 Aligned_cols=36 Identities=14% Similarity=0.238 Sum_probs=27.3
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCC
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPS 114 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~ 114 (385)
++-+|+++|.+.|.=|+.+...+ +...+++-.|...
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l--------------~~~g~l~tiE~~~ 94 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALAL--------------PDDGRLTTIERDE 94 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhC--------------CCCCeEEEEeCCH
Confidence 56899999999999888887544 1156778777755
No 211
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=48.95 E-value=9.9 Score=32.06 Aligned_cols=17 Identities=29% Similarity=0.749 Sum_probs=14.6
Q ss_pred EEeeeCCCCCcchHHHH
Q 016644 68 ALADLGCSCGNNTLYIV 84 (385)
Q Consensus 68 ~IaDlGCs~G~NSl~~~ 84 (385)
+|+|+||+.|..|+.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 58999999999887765
No 212
>PRK13699 putative methylase; Provisional
Probab=45.58 E-value=32 Score=32.28 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=16.7
Q ss_pred HHHHHHHHhhhccCCeEEEEe
Q 016644 216 AAFLGARSKEMKRCGSMFLVC 236 (385)
Q Consensus 216 ~~FL~~Ra~EL~pGG~lvl~~ 236 (385)
..+|..-++.|||||.|++.+
T Consensus 52 ~~~l~E~~RVLKpgg~l~if~ 72 (227)
T PRK13699 52 QPACNEMYRVLKKDALMVSFY 72 (227)
T ss_pred HHHHHHHHHHcCCCCEEEEEe
Confidence 466777789999999997644
No 213
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=43.57 E-value=53 Score=32.29 Aligned_cols=35 Identities=14% Similarity=0.107 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccC
Q 016644 205 NAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 205 ~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 239 (385)
..+-.+--.-+..+|..-.+-|+|||+|++..+--
T Consensus 205 RI~VN~El~~L~~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 205 RIEVNDELEELERALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 33444555678999999999999999999887543
No 214
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=42.38 E-value=16 Score=32.69 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.4
Q ss_pred EEeeeCCCCCcchHHHHH
Q 016644 68 ALADLGCSCGNNTLYIVD 85 (385)
Q Consensus 68 ~IaDlGCs~G~NSl~~~~ 85 (385)
+|+|.-||.|.||+.+..
T Consensus 2 ~vlD~fcG~GGNtIqFA~ 19 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFAR 19 (163)
T ss_dssp EEEETT-TTSHHHHHHHH
T ss_pred EEEEeccCcCHHHHHHHH
Confidence 689999999999999973
No 215
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=40.55 E-value=25 Score=34.58 Aligned_cols=45 Identities=18% Similarity=0.159 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCC
Q 016644 48 LRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDL 112 (385)
Q Consensus 48 l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDL 112 (385)
+++.+..+.. .+..+++|.+||.|.-|..+++.+ ++.-.|+--|.
T Consensus 8 l~Evl~~L~~------~pg~~vlD~TlG~GGhS~~il~~~--------------~~~g~VigiD~ 52 (296)
T PRK00050 8 LDEVVDALAI------KPDGIYVDGTFGGGGHSRAILERL--------------GPKGRLIAIDR 52 (296)
T ss_pred HHHHHHhhCC------CCCCEEEEeCcCChHHHHHHHHhC--------------CCCCEEEEEcC
Confidence 5555665532 123589999999999999987433 13467777776
No 216
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=39.78 E-value=40 Score=35.57 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=27.8
Q ss_pred CceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCC
Q 016644 65 IPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLP 113 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp 113 (385)
...+|+|.|||+|...+.++..+... ......+.+++..|.-
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~-------~~~~~~~~~i~g~DId 72 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEI-------NYFKEVELNIYFADID 72 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhc-------CCcccceeeeeeechh
Confidence 46899999999999888776554211 0011135777888874
No 217
>PF14904 FAM86: Family of unknown function
Probab=39.62 E-value=33 Score=28.24 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=26.7
Q ss_pred HHHHHHhhhhhHHhh--hChHHHHHHHHHHHHHh
Q 016644 331 ANSCRSVAGVLVDAH--IGDQLSEELFKRVERRG 362 (385)
Q Consensus 331 a~~iRa~~ep~l~~h--fg~~i~delf~r~~~~~ 362 (385)
.+|.|.|...++.+| .+.++.|+||+.|++.+
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~~EplDeLYealae~l 100 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVHCEPLDELYEALAEVL 100 (100)
T ss_pred hhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhhC
Confidence 357899999998864 78999999999998753
No 218
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=38.75 E-value=36 Score=31.57 Aligned_cols=33 Identities=18% Similarity=0.312 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHH
Q 016644 45 LHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDV 86 (385)
Q Consensus 45 ~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ 86 (385)
+..+.+||...-. -+++|||.|||..|+.....
T Consensus 21 lavF~~ai~~va~---------d~~~DLGaGsGiLs~~Aa~~ 53 (252)
T COG4076 21 LAVFTSAIAEVAE---------DTFADLGAGSGILSVVAAHA 53 (252)
T ss_pred HHHHHHHHHHHhh---------hceeeccCCcchHHHHHHhh
Confidence 3445666655521 56799999999999877644
No 219
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=38.63 E-value=29 Score=32.65 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=15.5
Q ss_pred eEEeeeCCCCCcchHHHH
Q 016644 67 FALADLGCSCGNNTLYIV 84 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~ 84 (385)
...+|+|.|||..|-.+.
T Consensus 84 ~s~LdvGsGSGYLt~~~~ 101 (237)
T KOG1661|consen 84 ASFLDVGSGSGYLTACFA 101 (237)
T ss_pred cceeecCCCccHHHHHHH
Confidence 678999999999987664
No 220
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=38.00 E-value=99 Score=32.68 Aligned_cols=131 Identities=14% Similarity=0.179 Sum_probs=78.0
Q ss_pred cCCCCCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCC
Q 016644 22 KGGNGEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYE 101 (385)
Q Consensus 22 ~gg~g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~ 101 (385)
.+|.....|.+....=++.+..-+.++.-.+ ..++--.|.|...+.|..+..+.+
T Consensus 331 ~~g~~~e~F~~Dt~~Wk~~V~~Y~~l~~~~i---------~~~~iRNVMDMnAg~GGFAAAL~~---------------- 385 (506)
T PF03141_consen 331 IPGISPEEFKEDTKHWKKRVSHYKKLLGLAI---------KWGRIRNVMDMNAGYGGFAAALID---------------- 385 (506)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHhhcccc---------cccceeeeeeecccccHHHHHhcc----------------
Confidence 3455556677666665555555555554222 123445689999999998877751
Q ss_pred CCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceeeccccCcc---cccc-CCCCcccEEEcccccccccCC
Q 016644 102 PPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFAAGVPGSF---YRRL-FPTRSIDFFHSAFSLHWLSQV 177 (385)
Q Consensus 102 ~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~~~vpgSF---y~rL-fP~~Svd~~~Ss~alHWLS~~ 177 (385)
.| -++.|=.|...-|+|=- ||-=|.=|.| -|.+ +-+++.|++|++.-+-=..+
T Consensus 386 ~~--VWVMNVVP~~~~ntL~v--------------------IydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~- 442 (506)
T PF03141_consen 386 DP--VWVMNVVPVSGPNTLPV--------------------IYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKD- 442 (506)
T ss_pred CC--ceEEEecccCCCCcchh--------------------hhhcccchhccchhhccCCCCcchhheehhhhhhhhcc-
Confidence 13 34667777666555311 1111222333 3555 67899999999876543222
Q ss_pred chhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEE
Q 016644 178 PESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFL 234 (385)
Q Consensus 178 P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl 234 (385)
.+.+ ...|----+-|+|||.+++
T Consensus 443 rC~~----------------------------------~~illEmDRILRP~G~~ii 465 (506)
T PF03141_consen 443 RCEM----------------------------------EDILLEMDRILRPGGWVII 465 (506)
T ss_pred cccH----------------------------------HHHHHHhHhhcCCCceEEE
Confidence 1333 2334445788999999876
No 221
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=37.43 E-value=22 Score=35.80 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=17.3
Q ss_pred CceEEeeeCCCCCcchHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~ 84 (385)
+-.+++|+|||+|.-|..++
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHH
Confidence 34789999999999997776
No 222
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=35.95 E-value=48 Score=30.75 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=16.7
Q ss_pred ceEEeeeCCCCCcchHHHHH
Q 016644 66 PFALADLGCSCGNNTLYIVD 85 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~ 85 (385)
-.+|+|+||+-|.=|.-.++
T Consensus 70 ~~~VlD~G~APGsWsQVavq 89 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQ 89 (232)
T ss_pred CCEEEEccCCCChHHHHHHH
Confidence 47999999999998776663
No 223
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=33.72 E-value=35 Score=33.33 Aligned_cols=35 Identities=17% Similarity=0.439 Sum_probs=23.7
Q ss_pred HHHHHHHHHH-HHhhhcCCCCCCCceEEeeeCCCCCcchHHHH
Q 016644 43 SMLHLLRETL-DNIQLMEPPSETIPFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 43 ~~~~~l~~ai-~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~ 84 (385)
.+.+.+.+++ .++.. .--+|+||||++|--.+...
T Consensus 100 dl~~~l~~e~~~~~~~-------~~k~vLELgCg~~Lp~i~~~ 135 (282)
T KOG2920|consen 100 DLLPYLKEEIGAQMSF-------SGKRVLELGCGAALPGIFAF 135 (282)
T ss_pred HHHHHHHHHhhhheEe-------cCceeEecCCcccccchhhh
Confidence 3567777665 44432 22589999999998776554
No 224
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=33.69 E-value=1.7e+02 Score=28.80 Aligned_cols=52 Identities=15% Similarity=0.333 Sum_probs=36.2
Q ss_pred CCceEEeeeCCCCCcchHHHHHH------------HHHHHHHHHHhcCCCCCceeEEecCCCCCc
Q 016644 64 TIPFALADLGCSCGNNTLYIVDV------------IIKHISKRYEASGYEPPEFSAFFSDLPSND 116 (385)
Q Consensus 64 ~~~~~IaDlGCs~G~NSl~~~~~------------ii~~i~~~~~~~~~~~p~~qv~~nDLp~ND 116 (385)
..+-+|+++|-|||..|..+++. .|..+.++..... -..-+||++.|.-.-|
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp-~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLKTD 120 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCC-ccceeeEEecccccCC
Confidence 35789999999999999998875 3455555553211 1245888888766555
No 225
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=32.89 E-value=30 Score=27.27 Aligned_cols=39 Identities=21% Similarity=0.473 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHH
Q 016644 257 HFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVE 296 (385)
Q Consensus 257 ~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le 296 (385)
.+...|..|...|.|+++|.|....|.+.|+-. .+.+|+
T Consensus 15 ~V~~~Ld~ll~~G~is~~Ecd~Ir~p~~T~sqq-ARrLLD 53 (81)
T cd08788 15 HVDGALELLLTRGFFSSYDCDEIRLPIFTPSQQ-ARRLLD 53 (81)
T ss_pred HHHHHHHHHHHcCCccHhhcchhhcCCCChHHH-HHHHHH
Confidence 477888899999999999999999999998643 344443
No 226
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=31.55 E-value=44 Score=33.02 Aligned_cols=36 Identities=17% Similarity=0.199 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccC
Q 016644 204 ANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 204 ~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 239 (385)
...|-.+--..+..+|.+--+-|+|||+|++..+--
T Consensus 212 iRI~VNdEL~~L~~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 212 IRIYVNDELEELEEALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred heeeehhHHHHHHHHHHHHHHhhCCCcEEEEEEecc
Confidence 355666777889999999999999999999887654
No 227
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=31.54 E-value=4.5e+02 Score=26.34 Aligned_cols=134 Identities=19% Similarity=0.157 Sum_probs=72.6
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcCCCCCCchhHhhhcCcCCceee
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLLPPIGSSMEECLASDTHRSYFA 145 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l~~~~~~~~~~~~~~~~~~~f~ 145 (385)
..+|+|+=++-|.=|..+.+.. ......|+-+|.-.+=...|..++.... ..++=+
T Consensus 157 ge~VlD~cAAPGGKTthla~~~-------------~~~~~iV~A~D~~~~Rl~~l~~nl~RlG-----------~~nv~~ 212 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELM-------------ENEGAIVVAVDVSPKRLKRLRENLKRLG-----------VRNVIV 212 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhc-------------CCCCceEEEEcCCHHHHHHHHHHHHHcC-----------CCceEE
Confidence 3899999999999988886433 1123567999997766666666654321 112111
Q ss_pred ccccCccccccCCCC-cccEEEcccccccccCCchhhhcccccccCCCceEEcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Q 016644 146 AGVPGSFYRRLFPTR-SIDFFHSAFSLHWLSQVPESALDKRSMAYNKGKVYIHGANEHTANAYKKQFQTDLAAFLGARSK 224 (385)
Q Consensus 146 ~~vpgSFy~rLfP~~-Svd~~~Ss~alHWLS~~P~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~q~~~D~~~FL~~Ra~ 224 (385)
.-..++.+....+.. .+|-|. =+.||.-... -..+=.+....+..++.+.-.-| ..+|..-.+
T Consensus 213 ~~~d~~~~~~~~~~~~~fD~iL--------lDaPCSg~G~---irr~Pd~~~~~~~~~i~~l~~lQ-----~~iL~~a~~ 276 (355)
T COG0144 213 VNKDARRLAELLPGGEKFDRIL--------LDAPCSGTGV---IRRDPDVKWRRTPEDIAELAKLQ-----KEILAAALK 276 (355)
T ss_pred EecccccccccccccCcCcEEE--------ECCCCCCCcc---cccCccccccCCHHHHHHHHHHH-----HHHHHHHHH
Confidence 122223333333333 366653 3455543110 00000111122222233332223 467888899
Q ss_pred hhccCCeEEEEeccC
Q 016644 225 EMKRCGSMFLVCLGR 239 (385)
Q Consensus 225 EL~pGG~lvl~~~g~ 239 (385)
-|||||+||-++-..
T Consensus 277 ~lk~GG~LVYSTCS~ 291 (355)
T COG0144 277 LLKPGGVLVYSTCSL 291 (355)
T ss_pred hcCCCCEEEEEccCC
Confidence 999999999888554
No 228
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.29 E-value=1e+02 Score=27.85 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHhhhccCCeEEEEeccC
Q 016644 203 TANAYKKQFQTD-----LAAFLGARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 203 v~~ay~~q~~~D-----~~~FL~~Ra~EL~pGG~lvl~~~g~ 239 (385)
+...|++.+-+. ...+|+...+-|||||+|-+.++--
T Consensus 48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 445566655444 4679999999999999999988654
No 229
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.34 E-value=34 Score=31.25 Aligned_cols=35 Identities=29% Similarity=0.252 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCcccccccccccccccCCHHH
Q 016644 256 THFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQE 290 (385)
Q Consensus 256 ~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~E 290 (385)
..+.+.+..||.+|+|.-+++-+-|+=|.||+..-
T Consensus 30 ~~VKdvlq~LvDDglV~~EKiGssn~YWsFps~~~ 64 (188)
T PF03962_consen 30 MSVKDVLQSLVDDGLVHVEKIGSSNYYWSFPSQAK 64 (188)
T ss_pred hhHHHHHHHHhccccchhhhccCeeEEEecChHHH
Confidence 35899999999999999999999999999998654
No 230
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=30.24 E-value=1.2e+02 Score=27.91 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=28.0
Q ss_pred ceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcC
Q 016644 66 PFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL 124 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l 124 (385)
.-+|+|+-||.|+.|+.+.. .. ..-.|+.+|+-..=+..|-+++
T Consensus 102 ~e~VlD~faGIG~f~l~~ak--------~~-------~~~~V~A~d~Np~a~~~L~~Ni 145 (200)
T PF02475_consen 102 GEVVLDMFAGIGPFSLPIAK--------HG-------KAKRVYAVDLNPDAVEYLKENI 145 (200)
T ss_dssp T-EEEETT-TTTTTHHHHHH--------HT--------SSEEEEEES-HHHHHHHHHHH
T ss_pred ceEEEEccCCccHHHHHHhh--------hc-------CccEEEEecCCHHHHHHHHHHH
Confidence 47899999999999999762 11 2357999999433444454443
No 231
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=29.12 E-value=81 Score=28.50 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHHHh
Q 016644 254 FGTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVVEA 297 (385)
Q Consensus 254 ~~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~le~ 297 (385)
||+.+.+-++.|+++|.++++..+ .....++++|+.+.|++
T Consensus 137 ~~~~l~~~l~~~~~~gfi~~~~~~---~~~~~d~~~e~~~~i~~ 177 (178)
T TIGR00730 137 HFDGLVEWLKYSIQEGFISESHLK---LIHVVSRPDELIEQVQN 177 (178)
T ss_pred hHHHHHHHHHHHHHCCCCCHHHcC---cEEEcCCHHHHHHHHHh
Confidence 346688888899999999987765 66678999999888764
No 232
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=28.53 E-value=1.1e+02 Score=28.39 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=18.1
Q ss_pred CceEEeeeCCCCCcchHHHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIVDV 86 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ 86 (385)
++-+|+++||++|.-|+.+...
T Consensus 45 ~~k~vLEIGt~~GySal~la~~ 66 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEA 66 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHT
T ss_pred CCceEEEeccccccHHHHHHHh
Confidence 4679999999999999888743
No 233
>PHA03297 envelope glycoprotein L; Provisional
Probab=27.78 E-value=25 Score=31.04 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=39.8
Q ss_pred CCCceEEeeeCCCCCcch------HHHHHHHHHHHHHHHHhcCCCCCceeEEecCCC----CCchHHHHh
Q 016644 63 ETIPFALADLGCSCGNNT------LYIVDVIIKHISKRYEASGYEPPEFSAFFSDLP----SNDFNTLFQ 122 (385)
Q Consensus 63 ~~~~~~IaDlGCs~G~NS------l~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp----~NDFn~lF~ 122 (385)
++++-||++-.||+|+-- --.++++...+.-..-+..+++||.-+.+.|-+ .|-|..+-.
T Consensus 37 ~gepkrileascgsgpimkgqlytaP~V~NL~~~laGIvVK~~CsPPEaILW~~~~~~aYWvNPyvviqG 106 (185)
T PHA03297 37 PGEPKRILEASCGSGPIMKGQLFTSPNIKNLLNRTTGIMVKAHCNPPEAILWVDTPPKPVWVNPFAVIQG 106 (185)
T ss_pred CCCchhhhhhccCCCcccccccccCCCchhhhhhhceeEEecCCCCceeEEEecCCCceEEecHHHHHHH
Confidence 467899999999999842 223444444443333334568899999999966 677766533
No 234
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=27.42 E-value=42 Score=30.49 Aligned_cols=33 Identities=27% Similarity=0.282 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHcCCcccccccccccccccCCH
Q 016644 256 THFQDAWNDLVQEGLITGEKRDSFNIPVYASSL 288 (385)
Q Consensus 256 ~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~ 288 (385)
..+.+.+++||.+|+++-|+.-+-|+=|.|+|.
T Consensus 43 ~tVKd~lQqlVDDgvV~~EK~GtsN~YWsF~s~ 75 (209)
T COG5124 43 MTVKDLLQQLVDDGVVSVEKCGTSNIYWSFKSQ 75 (209)
T ss_pred HHHHHHHHHHhhcCceeeeeeccceeEEecchH
Confidence 458999999999999999999999999999864
No 235
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=26.66 E-value=56 Score=30.86 Aligned_cols=23 Identities=17% Similarity=0.391 Sum_probs=16.4
Q ss_pred CceEEeeeCCCCCcchHHHHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIVDVI 87 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~i 87 (385)
.+++|+|+|.|+|.+..-++..+
T Consensus 18 ~~~~ivE~GaG~G~La~diL~~l 40 (252)
T PF02636_consen 18 EPLRIVEIGAGRGTLARDILRYL 40 (252)
T ss_dssp S-EEEEEES-TTSHHHHHHHHHH
T ss_pred cCcEEEEECCCchHHHHHHHHHH
Confidence 46999999999998766655443
No 236
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=26.54 E-value=63 Score=31.93 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccC
Q 016644 206 AYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGR 239 (385)
Q Consensus 206 ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~ 239 (385)
.+-.+--.-+..+|..-..-|+|||+|++..+--
T Consensus 210 I~VN~EL~~L~~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 210 IYVNDELEELEEALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHhHHHHHHHHHHHHHHhcCCCEEEEEecCc
Confidence 3444555678999999999999999999887543
No 237
>smart00400 ZnF_CHCC zinc finger.
Probab=25.71 E-value=58 Score=23.24 Aligned_cols=21 Identities=19% Similarity=0.369 Sum_probs=16.9
Q ss_pred eEEeeeCCCCCcchHHHHHHH
Q 016644 67 FALADLGCSCGNNTLYIVDVI 87 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~i 87 (385)
-..=++||+.|.+.+-++..+
T Consensus 22 n~~~Cf~cg~gGd~i~fv~~~ 42 (55)
T smart00400 22 QFFHCFGCGAGGNVISFLMKY 42 (55)
T ss_pred CEEEEeCCCCCCCHHHHHHHH
Confidence 445689999999999888655
No 238
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=25.53 E-value=1e+02 Score=30.81 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=14.9
Q ss_pred EEeeeCCCCCcchHHHH
Q 016644 68 ALADLGCSCGNNTLYIV 84 (385)
Q Consensus 68 ~IaDlGCs~G~NSl~~~ 84 (385)
.|+|+=||+|..|+.+.
T Consensus 199 ~vlDlycG~G~fsl~la 215 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLA 215 (352)
T ss_dssp EEEEES-TTTCCHHHHH
T ss_pred cEEEEeecCCHHHHHHH
Confidence 79999999999999986
No 239
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=25.53 E-value=6.4e+02 Score=24.88 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=17.9
Q ss_pred eEEeeeCCCCCcchHHHHHHH
Q 016644 67 FALADLGCSCGNNTLYIVDVI 87 (385)
Q Consensus 67 ~~IaDlGCs~G~NSl~~~~~i 87 (385)
-+|++-|.|+|..|..+...+
T Consensus 107 svV~EsGTGSGSlShaiaraV 127 (314)
T KOG2915|consen 107 SVVLESGTGSGSLSHAIARAV 127 (314)
T ss_pred CEEEecCCCcchHHHHHHHhh
Confidence 678999999999999887554
No 240
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=25.15 E-value=5.4e+02 Score=28.71 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCeEEEEeccCCCCCCCCCCCCccchHHHHHHHHHHHHHcCCcccccc----
Q 016644 201 EHTANAYKKQFQTDLAAFLGARSKEMKRCGSMFLVCLGRTSADPTDQGGPGILFGTHFQDAWNDLVQEGLITGEKR---- 276 (385)
Q Consensus 201 ~~v~~ay~~q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g~~~~~~~~~~~~~~~~~~~l~~al~~mv~eG~i~~e~~---- 276 (385)
-++..+|+..|. ++|.+|.--=.+.+++ ..|+|-++.+.. -.+ +.|..|+++ ++-..--+
T Consensus 197 Gp~~aiyqArf~----kYL~~RGl~~~~~~~v-~afLGDgEmDEp------es~-gAi~~A~re----~LdNlifVincN 260 (887)
T COG2609 197 GPIQAIYQARFL----KYLEARGLKDTSDQKV-WAFLGDGEMDEP------ESR-GAITEAARE----KLDNLIFVINCN 260 (887)
T ss_pred cHHHHHHHHHHH----HHHHhcCCcCCCCCeE-EEEecCcccCCc------hhh-HHHHHHHHh----cCCceEEEEecc
Confidence 456788988855 4677776555667777 556676543211 111 446666553 22111111
Q ss_pred -cccccccccC--CHHHHHHHHHhcCceEecEEEEEeCCCCC
Q 016644 277 -DSFNIPVYAS--SLQEFKEVVEANGSFVINKLEVFKGGSPL 315 (385)
Q Consensus 277 -d~f~~P~y~p--s~~Ev~~~le~~gsF~i~~le~~~~~~~~ 315 (385)
.+..-|..-. =..|+..+++..| |.|+++.-=.+++.+
T Consensus 261 lQrLDgpVrgngkiiqelE~~FrgAG-W~VikviWg~~wd~l 301 (887)
T COG2609 261 LQRLDGPVRGNGKIIQELEGIFRGAG-WNVIKVIWGRRWDEL 301 (887)
T ss_pred hhhcCCcccCCchhHHHHHHHhccCC-ceEEEEEecccHHHH
Confidence 1222355444 5788999999999 999887643333333
No 241
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=25.04 E-value=86 Score=31.87 Aligned_cols=66 Identities=14% Similarity=0.112 Sum_probs=44.7
Q ss_pred CCchhHHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCceEEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCce
Q 016644 26 GEASYANNSQAQAIHAQSMLHLLRETLDNIQLMEPPSETIPFALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEF 105 (385)
Q Consensus 26 g~~sY~~nS~~Q~~~~~~~~~~l~~ai~~~~~~~~~~~~~~~~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~ 105 (385)
++..||-.+..-+...-.+...+.+... ....++|+|+.||+|.-++...+++ + .--
T Consensus 14 ~~vFYNP~~~~nRDlsv~~~~~~~~~~~---------~~~~~~vLD~faGsG~rgir~a~e~-------------~-ga~ 70 (374)
T TIGR00308 14 ETVFYNPRMQFNRDLSVTCIQAFDNLYG---------KECYINIADALSASGIRAIRYAHEI-------------E-GVR 70 (374)
T ss_pred CCcccCchhhccccHHHHHHHHHHHhhC---------CcCCCEEEECCCchhHHHHHHHhhC-------------C-CCC
Confidence 3579998888888766555554443210 0124899999999999999987432 0 114
Q ss_pred eEEecCCCC
Q 016644 106 SAFFSDLPS 114 (385)
Q Consensus 106 qv~~nDLp~ 114 (385)
+|++||+-.
T Consensus 71 ~Vv~nD~n~ 79 (374)
T TIGR00308 71 EVFANDINP 79 (374)
T ss_pred EEEEEeCCH
Confidence 788999843
No 242
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=25.02 E-value=68 Score=28.98 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=14.2
Q ss_pred HhhhccCCeEEEEec-cC
Q 016644 223 SKEMKRCGSMFLVCL-GR 239 (385)
Q Consensus 223 a~EL~pGG~lvl~~~-g~ 239 (385)
.+-|||||+|++.++ |+
T Consensus 98 ~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 98 KCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred HHhhccCCeEEEEeecCC
Confidence 378999999999995 54
No 243
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=24.72 E-value=71 Score=23.55 Aligned_cols=27 Identities=22% Similarity=0.432 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCe
Q 016644 205 NAYKKQFQTDLAAFLGARSKEMKRCGS 231 (385)
Q Consensus 205 ~ay~~q~~~D~~~FL~~Ra~EL~pGG~ 231 (385)
+.+++-|..||..++......|+.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 567788899999999999999998775
No 244
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=24.23 E-value=63 Score=23.07 Aligned_cols=19 Identities=37% Similarity=0.608 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHcCCcccc
Q 016644 256 THFQDAWNDLVQEGLITGE 274 (385)
Q Consensus 256 ~~l~~al~~mv~eG~i~~e 274 (385)
..|.++|.+|+.+|.|+++
T Consensus 13 ~aL~dtLDeli~~~~I~p~ 31 (49)
T PF02268_consen 13 IALTDTLDELIQEGKITPQ 31 (49)
T ss_dssp HHHHHHHHHHHHTTSS-HH
T ss_pred HHHHHHHHHHHHcCCCCHH
Confidence 5699999999999999864
No 245
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=23.63 E-value=82 Score=27.08 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 016644 203 TANAYKKQFQTDLAAFLGARS 223 (385)
Q Consensus 203 v~~ay~~q~~~D~~~FL~~Ra 223 (385)
+.+.|++||++||...|+.|.
T Consensus 13 ~i~~yS~eFe~~Fl~lLr~~h 33 (127)
T PF10357_consen 13 FIDEYSEEFEKDFLRLLRRRH 33 (127)
T ss_dssp -HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 789999999999999999984
No 246
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=22.89 E-value=79 Score=23.51 Aligned_cols=30 Identities=47% Similarity=0.892 Sum_probs=22.6
Q ss_pred cccccccccCCHHHHHHHHH----hcCceEecEEE
Q 016644 277 DSFNIPVYASSLQEFKEVVE----ANGSFVINKLE 307 (385)
Q Consensus 277 d~f~~P~y~ps~~Ev~~~le----~~gsF~i~~le 307 (385)
.+|-+|.|..|.+|-...-+ ..| |.|.+++
T Consensus 25 ~sfEVPV~A~SLeeA~e~AE~~Y~~aG-f~VtRiR 58 (63)
T PHA00457 25 QSFEVPVYAKSLEEATELAEWQYVPAG-FVVTRIR 58 (63)
T ss_pred ceEEeeeecccHHHHHHHHHHhhhccC-cEEEEec
Confidence 46779999999999766555 346 8887764
No 247
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=22.78 E-value=86 Score=26.69 Aligned_cols=38 Identities=16% Similarity=0.310 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCcccccccccccccccCCHHHHHHHH
Q 016644 255 GTHFQDAWNDLVQEGLITGEKRDSFNIPVYASSLQEFKEVV 295 (385)
Q Consensus 255 ~~~l~~al~~mv~eG~i~~e~~d~f~~P~y~ps~~Ev~~~l 295 (385)
|+.+.+-++.|+++|.++++..+ +.....+++|+.+.|
T Consensus 96 w~~l~~~l~~~~~~g~i~~~~~~---~~~~~d~~~e~~~~i 133 (133)
T PF03641_consen 96 WDPLLEFLDRMIEEGFISPDDLD---LLHFVDDPEEALEYI 133 (133)
T ss_dssp CHHHHHHHHHHHHTTSSSHHHHC---CEEEESSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHCC---eEEEeCCHHHHHhhC
Confidence 35577778899999999987764 778889999987654
No 248
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=22.15 E-value=38 Score=22.24 Aligned_cols=15 Identities=33% Similarity=0.873 Sum_probs=7.9
Q ss_pred ccccCCHHHHHHHHH
Q 016644 282 PVYASSLQEFKEVVE 296 (385)
Q Consensus 282 P~y~ps~~Ev~~~le 296 (385)
|.+.||.+|++..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 678889998866553
No 249
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=21.66 E-value=1.1e+02 Score=27.93 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=23.5
Q ss_pred EEeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCC
Q 016644 68 ALADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDL 112 (385)
Q Consensus 68 ~IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDL 112 (385)
+|+|+|+|-|-=.+.+. .++ |+.++++-|=
T Consensus 51 ~~lDiGSGaGfPGipLa-----I~~----------p~~~~~LvEs 80 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLA-----IAR----------PDLQVTLVES 80 (184)
T ss_dssp EEEEETSTTTTTHHHHH-----HH-----------TTSEEEEEES
T ss_pred eEEecCCCCCChhHHHH-----HhC----------CCCcEEEEeC
Confidence 89999999998887764 111 7889998885
No 250
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=21.58 E-value=1.2e+02 Score=28.39 Aligned_cols=19 Identities=21% Similarity=-0.017 Sum_probs=16.7
Q ss_pred ceEEeeeCCCCCcchHHHH
Q 016644 66 PFALADLGCSCGNNTLYIV 84 (385)
Q Consensus 66 ~~~IaDlGCs~G~NSl~~~ 84 (385)
-.+|+|+=-|.|.-|.++-
T Consensus 49 g~tVid~~PGgGy~TrI~s 67 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFS 67 (238)
T ss_pred CCEEEEEecCCccHhhhhc
Confidence 3789999999999998875
No 251
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=21.30 E-value=76 Score=33.18 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=18.3
Q ss_pred CceEEeeeCCCCCcchHHHHHH
Q 016644 65 IPFALADLGCSCGNNTLYIVDV 86 (385)
Q Consensus 65 ~~~~IaDlGCs~G~NSl~~~~~ 86 (385)
+..-++|+|.|||-.|++.+.+
T Consensus 66 gkv~vLdigtGTGLLSmMAvra 87 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRA 87 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHh
Confidence 4577899999999999987654
No 252
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=20.80 E-value=68 Score=31.82 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHhhhccCCeEEEEecc
Q 016644 210 QFQTDLAAFLGARSKEMKRCGSMFLVCLG 238 (385)
Q Consensus 210 q~~~D~~~FL~~Ra~EL~pGG~lvl~~~g 238 (385)
+--.-|..+|..-.+-|+|||+|++..+-
T Consensus 215 ~EL~~L~~~L~~a~~~L~~gGrl~VISFH 243 (310)
T PF01795_consen 215 DELEELERGLEAAPDLLKPGGRLVVISFH 243 (310)
T ss_dssp THHHHHHHHHHHHHHHEEEEEEEEEEESS
T ss_pred cHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 33467889999999999999999988754
No 253
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=20.72 E-value=57 Score=30.23 Aligned_cols=41 Identities=17% Similarity=0.276 Sum_probs=29.2
Q ss_pred EeeeCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCceeEEecCCCCCchHHHHhcC
Q 016644 69 LADLGCSCGNNTLYIVDVIIKHISKRYEASGYEPPEFSAFFSDLPSNDFNTLFQLL 124 (385)
Q Consensus 69 IaDlGCs~G~NSl~~~~~ii~~i~~~~~~~~~~~p~~qv~~nDLp~NDFn~lF~~l 124 (385)
|||+||=+|...+.++. +. .--.++..|+-.+-+..+-.++
T Consensus 1 vaDIGtDHgyLpi~L~~--------~~-------~~~~~ia~DI~~gpL~~A~~~i 41 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLK--------NG-------KAPKAIAVDINPGPLEKAKENI 41 (205)
T ss_dssp EEEET-STTHHHHHHHH--------TT-------SEEEEEEEESSHHHHHHHHHHH
T ss_pred CceeccchhHHHHHHHh--------cC-------CCCEEEEEeCCHHHHHHHHHHH
Confidence 69999999999988872 21 3457999999766666555544
No 254
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=20.57 E-value=1.8e+02 Score=29.47 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=18.0
Q ss_pred CCceEEeeeCCCCCcchHHHHHHH
Q 016644 64 TIPFALADLGCSCGNNTLYIVDVI 87 (385)
Q Consensus 64 ~~~~~IaDlGCs~G~NSl~~~~~i 87 (385)
+.++.|+++|.|+|....-++..+
T Consensus 76 p~~~~lvEiGaG~G~l~~DiL~~l 99 (370)
T COG1565 76 PAPLKLVEIGAGRGTLASDILRTL 99 (370)
T ss_pred CCCceEEEeCCCcChHHHHHHHHH
Confidence 467999999999998655544433
Done!