BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 016645
         (385 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QCX|A Chain A, Pectin Lyase B
          Length = 359

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 255 YPMSYLSFHYWALQGQYQND---LKGLWFDNQSPDLPKIPGEYVLENVFQI 302
           Y  +    HYW +     ND   LKG +F N S  +PK+ G  +L  V  +
Sbjct: 202 YSATCNGHHYWGVYLDGSNDMVTLKGNYFYNLSGRMPKVQGNTLLHAVNNL 252


>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
 pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
          Length = 920

 Score = 28.9 bits (63), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 15/73 (20%), Positives = 34/73 (46%)

Query: 291 PGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARRRMQ 350
           P ++V+E    +      W+D  VI  +++   ++ FV    +  +   ++  LA + + 
Sbjct: 123 PIQFVMEGAAVLAAGLEDWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLALKAVV 182

Query: 351 QKNGTQNTTVAPD 363
            ++GT     AP+
Sbjct: 183 LRDGTLKEIEAPE 195


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,881,100
Number of Sequences: 62578
Number of extensions: 427774
Number of successful extensions: 1085
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1083
Number of HSP's gapped (non-prelim): 3
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)