Query 016645
Match_columns 385
No_of_seqs 207 out of 2059
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 08:43:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00955 3a01204 The Eye Pigm 100.0 4E-49 8.6E-54 405.5 34.6 331 3-337 266-616 (617)
2 TIGR00956 3a01205 Pleiotropic 100.0 1.9E-49 4E-54 436.6 33.2 335 2-339 309-699 (1394)
3 PLN03140 ABC transporter G fam 100.0 1.3E-48 2.7E-53 428.8 34.6 332 3-337 1126-1469(1470)
4 TIGR00956 3a01205 Pleiotropic 100.0 3.7E-47 7.9E-52 418.5 30.7 328 3-335 1008-1391(1394)
5 PLN03211 ABC transporter G-25; 100.0 1.9E-46 4.1E-51 385.9 30.6 264 57-334 384-658 (659)
6 PLN03140 ABC transporter G fam 100.0 6.8E-46 1.5E-50 407.3 34.0 331 3-336 437-791 (1470)
7 KOG0061 Transporter, ABC super 100.0 4.7E-45 1E-49 372.0 30.9 276 58-337 333-611 (613)
8 KOG0065 Pleiotropic drug resis 100.0 3.6E-42 7.7E-47 358.4 25.0 341 3-346 361-742 (1391)
9 KOG0065 Pleiotropic drug resis 100.0 2.6E-41 5.6E-46 352.0 22.3 333 2-337 1035-1386(1391)
10 PF01061 ABC2_membrane: ABC-2 99.9 4.9E-25 1.1E-29 196.6 0.6 208 63-275 1-210 (210)
11 TIGR01291 nodJ ABC-2 type tran 99.7 9.6E-16 2.1E-20 141.3 25.1 236 65-334 7-251 (253)
12 TIGR01247 drrB daunorubicin re 99.7 1.2E-15 2.6E-20 139.2 23.0 226 71-328 1-234 (236)
13 TIGR03861 phenyl_ABC_PedC alco 99.7 1.5E-14 3.2E-19 133.5 25.4 235 62-332 1-250 (253)
14 TIGR00025 Mtu_efflux ABC trans 99.7 9.4E-15 2E-19 133.0 23.1 223 77-332 2-230 (232)
15 PRK15066 inner membrane transp 99.6 5.2E-13 1.1E-17 123.5 26.6 242 61-337 6-256 (257)
16 TIGR03062 pip_yhgE_Cterm YhgE/ 99.6 5.3E-14 1.1E-18 125.9 16.6 152 152-335 57-208 (208)
17 TIGR01248 drrC daunorubicin re 99.2 3.8E-10 8.3E-15 95.6 14.8 132 135-272 13-147 (152)
18 COG0842 ABC-type multidrug tra 99.2 2.3E-09 5.1E-14 99.5 21.3 170 138-336 115-285 (286)
19 COG1682 TagG ABC-type polysacc 99.0 3.4E-07 7.4E-12 84.3 24.1 237 61-336 16-258 (263)
20 TIGR03518 ABC_perm_GldF glidin 98.9 1.6E-06 3.5E-11 79.2 24.4 220 66-333 2-240 (240)
21 PRK15176 Vi polysaccharide exp 98.7 7.4E-06 1.6E-10 75.8 23.5 239 63-336 19-262 (264)
22 PF12679 ABC2_membrane_2: ABC- 98.6 1E-05 2.2E-10 75.2 22.6 167 142-333 89-275 (277)
23 PF06422 PDR_CDR: CDR ABC tran 98.6 1.1E-07 2.4E-12 74.7 5.4 62 285-347 26-87 (103)
24 PF12698 ABC2_membrane_3: ABC- 98.5 3.4E-08 7.4E-13 94.0 0.0 158 135-327 181-343 (344)
25 PF03379 CcmB: CcmB protein; 98.0 0.00071 1.5E-08 60.7 17.2 158 65-236 1-167 (215)
26 COG1277 NosY ABC-type transpor 97.9 0.0033 7.2E-08 58.5 21.7 249 64-334 3-276 (278)
27 COG4587 ABC-type uncharacteriz 97.7 0.0069 1.5E-07 54.1 18.6 247 60-335 3-261 (268)
28 TIGR01190 ccmB heme exporter p 97.7 0.0037 8.1E-08 55.5 16.3 154 69-236 2-164 (211)
29 TIGR03733 lanti_perm_MutG lant 97.2 0.17 3.8E-06 46.3 26.1 187 69-270 3-196 (248)
30 PF12051 DUF3533: Protein of u 97.1 0.027 5.8E-07 55.2 17.0 137 153-322 240-380 (382)
31 PF08370 PDR_assoc: Plant PDR 97.1 0.0018 3.9E-08 45.8 5.6 49 288-337 9-58 (65)
32 TIGR01257 rim_protein retinal- 96.9 0.087 1.9E-06 61.6 20.8 141 130-274 668-811 (2272)
33 COG2386 CcmB ABC-type transpor 96.8 0.098 2.1E-06 45.7 15.3 144 63-220 2-154 (221)
34 PF12730 ABC2_membrane_4: ABC- 96.5 0.39 8.4E-06 42.2 18.4 89 142-231 69-173 (232)
35 COG1511 Predicted membrane pro 96.4 0.07 1.5E-06 57.1 14.8 148 147-326 610-757 (780)
36 PF06182 ABC2_membrane_6: ABC- 96.0 1.1 2.3E-05 40.5 18.2 152 152-335 71-223 (229)
37 COG3559 TnrB3 Putative exporte 94.9 4.1 8.8E-05 39.9 19.1 211 82-334 299-533 (536)
38 TIGR01257 rim_protein retinal- 94.3 0.71 1.5E-05 54.4 13.9 95 134-230 1699-1797(2272)
39 COG4200 Uncharacterized protei 93.1 6.2 0.00013 35.3 22.1 146 144-335 76-234 (239)
40 COG1668 NatB ABC-type Na+ effl 91.9 8.1 0.00018 38.2 15.7 78 152-229 227-316 (407)
41 TIGR03732 lanti_perm_MutE lant 87.2 23 0.00049 32.2 24.6 106 152-271 80-189 (241)
42 KOG0059 Lipid exporter ABCA1 a 81.4 24 0.00051 38.8 13.0 101 133-236 316-418 (885)
43 PF09847 DUF2074: Predicted pe 78.3 78 0.0017 31.8 20.4 121 57-185 242-362 (449)
44 PF12273 RCR: Chitin synthesis 66.5 6.4 0.00014 32.1 3.2 29 308-336 1-29 (130)
45 PF04123 DUF373: Domain of unk 58.8 1.8E+02 0.0038 28.1 15.1 45 57-102 133-177 (344)
46 PF10766 DUF2592: Protein of u 56.8 18 0.0004 22.6 3.1 21 81-101 4-24 (41)
47 TIGR03061 pip_yhgE_Nterm YhgE/ 52.8 17 0.00037 30.8 3.6 33 71-103 1-36 (164)
48 COG4325 Predicted membrane pro 51.2 1.7E+02 0.0036 28.6 10.0 70 169-238 132-205 (464)
49 PF13829 DUF4191: Domain of un 50.4 1.9E+02 0.0041 26.0 11.6 47 56-102 4-50 (224)
50 COG3559 TnrB3 Putative exporte 43.6 3.5E+02 0.0075 27.0 12.5 70 192-269 164-233 (536)
51 PF01102 Glycophorin_A: Glycop 43.4 43 0.00093 27.0 4.2 28 308-335 67-94 (122)
52 PRK11026 ftsX cell division AB 42.4 64 0.0014 30.6 6.0 44 57-100 5-48 (309)
53 PF10011 DUF2254: Predicted me 39.7 3.7E+02 0.0079 26.2 11.4 80 137-231 82-163 (371)
54 TIGR00439 ftsX putative protei 38.8 61 0.0013 30.7 5.3 44 56-99 4-47 (309)
55 PLN03211 ABC transporter G-25; 38.4 5.1E+02 0.011 27.4 15.3 15 3-17 306-320 (659)
56 PF12273 RCR: Chitin synthesis 36.0 25 0.00055 28.5 1.9 27 313-339 3-29 (130)
57 PRK14750 kdpF potassium-transp 35.7 89 0.0019 18.1 3.5 25 311-335 2-26 (29)
58 PF12911 OppC_N: N-terminal TM 35.0 1.4E+02 0.003 19.9 5.5 35 69-103 5-40 (56)
59 PF12725 DUF3810: Protein of u 32.9 1.9E+02 0.0041 27.5 7.5 35 148-182 3-37 (318)
60 PF06645 SPC12: Microsomal sig 28.6 1.2E+02 0.0026 22.2 4.2 9 257-265 58-66 (76)
61 PF13346 ABC2_membrane_5: ABC- 27.6 3.8E+02 0.0083 22.7 18.2 34 147-180 68-101 (206)
62 PF11446 DUF2897: Protein of u 26.9 1.1E+02 0.0024 20.9 3.5 20 316-335 9-28 (55)
63 PF05545 FixQ: Cbb3-type cytoc 25.0 1E+02 0.0022 20.2 3.0 25 310-334 10-34 (49)
64 PF02009 Rifin_STEVOR: Rifin/s 24.9 71 0.0015 30.1 3.1 24 314-337 263-286 (299)
65 PLN03223 Polycystin cation cha 24.4 1.2E+03 0.025 27.3 13.9 63 125-187 1289-1355(1634)
66 PF11770 GAPT: GRB2-binding ad 24.0 65 0.0014 26.8 2.3 27 337-363 40-66 (158)
67 KOG4112 Signal peptidase subun 23.8 1.3E+02 0.0029 22.9 3.7 17 247-267 67-83 (101)
68 PHA02844 putative transmembran 23.6 1.3E+02 0.0029 21.8 3.5 29 307-335 46-74 (75)
69 PRK13628 serine/threonine tran 23.5 6.4E+02 0.014 24.9 9.6 26 77-102 10-35 (402)
70 PF00375 SDF: Sodium:dicarboxy 23.2 4.5E+02 0.0097 25.6 8.6 62 158-219 30-94 (390)
71 PRK14748 kdpF potassium-transp 23.1 1.7E+02 0.0036 17.0 3.5 24 312-335 3-26 (29)
72 PRK11283 gltP glutamate/aspart 22.8 6.1E+02 0.013 25.3 9.4 63 156-218 41-106 (437)
73 TIGR01477 RIFIN variant surfac 21.8 97 0.0021 29.8 3.3 31 308-339 312-342 (353)
74 PTZ00046 rifin; Provisional 21.7 98 0.0021 29.9 3.4 31 308-339 317-347 (358)
75 TIGR02865 spore_II_E stage II 21.7 5.2E+02 0.011 28.0 9.2 61 189-249 176-240 (764)
76 PRK00753 psbL photosystem II r 21.4 1.6E+02 0.0034 18.3 3.0 23 81-103 17-39 (39)
77 PHA02650 hypothetical protein; 21.1 2E+02 0.0043 21.2 4.0 29 308-336 48-76 (81)
78 COG1113 AnsP Gamma-aminobutyra 20.3 8.9E+02 0.019 24.4 16.0 95 143-245 82-183 (462)
No 1
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=4e-49 Score=405.51 Aligned_cols=331 Identities=23% Similarity=0.358 Sum_probs=290.7
Q ss_pred ccCCCCCCcccccch---------HHHHHHHHHHHhcCHHHHHHHHHHHhhhcccC-----Cc-cCCCCCCCCHHHHHHH
Q 016645 3 LKFETSDDPLEKITT---------AEAIKNLIDFYQTSQHSYAAKEKVEGISKVKG-----TV-LDAGGSQASFLMQAFT 67 (385)
Q Consensus 3 ~~~~np~d~~~~~~~---------~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~s~~~q~~~ 67 (385)
++..||+|+++++.+ .+..+++.+.|++|+.+++..+.++....+++ .. .+...+..++++|+..
T Consensus 266 p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~ 345 (617)
T TIGR00955 266 PENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYA 345 (617)
T ss_pred CCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHH
Confidence 466799999986532 34557788899998877766555443221111 11 1234567899999999
Q ss_pred HHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhh-hhhhhHHhhhHHHHHH
Q 016645 68 LTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKVFQRE 146 (385)
Q Consensus 68 L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~-~~~~~~~~e~~v~~rE 146 (385)
|++|.+++.+|||.++..++++.+++++++|++|++.+.++.+++++.|++|+++.+..+.++ ..++.++.||.+|.||
T Consensus 346 l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 346 LLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999988888865 4688999999999999
Q ss_pred hhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 016645 147 RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGII 226 (385)
Q Consensus 147 ~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~ 226 (385)
+.+|+|++.+|++|++++++|+.++.+++|++|+|||+|+++++..|+.|++++++..+++.++|+++++++|+...|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcc-cCCCC---CCCCccHHHHHhhhhCc
Q 016645 227 TGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWF-DNQSP---DLPKIPGEYVLENVFQI 302 (385)
Q Consensus 227 ~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~-~~~~~---~~~~~~g~~~L~~~~g~ 302 (385)
++++++.++++++|++++.++||. +|+ |++|+||++|++++++.|||.+.++ +|... +.|..+|+++|+. +|+
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~-~~~-W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~-~g~ 582 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPV-YFK-WLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILET-LSF 582 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccH-HHH-HHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHh-cCC
Confidence 999999999999999999999998 455 6999999999999999999999886 57542 2255789999998 999
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645 303 DVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT 337 (385)
Q Consensus 303 ~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~ 337 (385)
+.++ .|.|+++|++++++|++++|+.|+++.+++
T Consensus 583 ~~~~-~~~~~~il~~~~~~~~~l~~~~L~~~~~~~ 616 (617)
T TIGR00955 583 RNAD-LYLDLIGLVILIFFFRLLAYFALRIRIRRK 616 (617)
T ss_pred Cccc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8764 899999999999999999999999876654
No 2
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.9e-49 Score=436.58 Aligned_cols=335 Identities=16% Similarity=0.297 Sum_probs=297.8
Q ss_pred CccCCCCCCcccccchHH--------------HHHHHHHHHhcCHHHHHHHHHHHhhhccc-----------------C-
Q 016645 2 KLKFETSDDPLEKITTAE--------------AIKNLIDFYQTSQHSYAAKEKVEGISKVK-----------------G- 49 (385)
Q Consensus 2 ~~~~~np~d~~~~~~~~~--------------~~~~l~~~~~~S~~~~~~~~~~~~~~~~~-----------------~- 49 (385)
.++..||+||+.++.+.+ ..+++++.|++|+.+++..++++....+. .
T Consensus 309 ~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (1394)
T TIGR00956 309 CPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSK 388 (1394)
T ss_pred CCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcc
Confidence 356789999998775532 24689999999998887777665432110 0
Q ss_pred CccCCCCCCCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHh
Q 016645 50 TVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMS 129 (385)
Q Consensus 50 ~~~~~~~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~ 129 (385)
.......+..|+++|+++|++|++++++|||.+++.++++.+++|+++|++|+++++++++++++.|++|+++++.++++
T Consensus 389 ~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~ 468 (1394)
T TIGR00956 389 RTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSS 468 (1394)
T ss_pred cccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 01113457889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 016645 130 IGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVES 209 (385)
Q Consensus 130 ~~~~~~~~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~ 209 (385)
+..++.+..||++|.||+.+++|++++|++|++++++|+.++.+++|++|+|||+|++.+++.|+.|++++++..+++.+
T Consensus 469 ~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~ 548 (1394)
T TIGR00956 469 LLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSH 548 (1394)
T ss_pred HHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCC--C--
Q 016645 210 LMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS--P-- 285 (385)
Q Consensus 210 lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~--~-- 285 (385)
+++++++++||...|+.++++++.++++++|+++|.++||. |..|++|+||++|+++|++.|||++.+++|.. |
T Consensus 549 ~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~--~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g 626 (1394)
T TIGR00956 549 LFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLG--WSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSG 626 (1394)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccH--HHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCC
Confidence 99999999999999999999999999999999999999998 44569999999999999999999999999952 1
Q ss_pred -----------CC---------CCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 016645 286 -----------DL---------PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPW 339 (385)
Q Consensus 286 -----------~~---------~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~~~ 339 (385)
.| +..+|+++|+..+|++.++ +|+|+++|++++++|++++++++++.+.....
T Consensus 627 ~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~-~w~n~gil~~~~v~f~~~~~l~l~~~~~~~~~ 699 (1394)
T TIGR00956 627 GGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSH-KWRNFGIIIGFTVFFFFVYILLTEFNKGAKQK 699 (1394)
T ss_pred CCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccch-hhHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 12 3569999999668998775 99999999999999999999999998755443
No 3
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-48 Score=428.79 Aligned_cols=332 Identities=19% Similarity=0.233 Sum_probs=293.6
Q ss_pred ccCCCCCCcccccchHH----HHHHHHHHHhcCHHHHHHHHHHHhhhcccCCc--c-CCCCCCCCHHHHHHHHHHHHHHH
Q 016645 3 LKFETSDDPLEKITTAE----AIKNLIDFYQTSQHSYAAKEKVEGISKVKGTV--L-DAGGSQASFLMQAFTLTKRSFVN 75 (385)
Q Consensus 3 ~~~~np~d~~~~~~~~~----~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~s~~~q~~~L~~R~~~~ 75 (385)
++..||||+.+++.+.+ ...++++.|++|+.+++..+.+++...+.... . .+..+++++++|+.+|++|++++
T Consensus 1126 p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~ 1205 (1470)
T PLN03140 1126 KEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWT 1205 (1470)
T ss_pred CCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHH
Confidence 46789999999876543 12479999999999888776666544322111 1 13568899999999999999999
Q ss_pred hhhChhHHHHHHHHHHHHHHHHHhhccccCCCc---hhhhhhhhHHHHHHHHHHHHhh-hhhhhHHhhhHHHHHHhhCCC
Q 016645 76 MSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSI-GGFPSFVEDMKVFQRERLNGH 151 (385)
Q Consensus 76 ~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~---~~i~~~~~~l~~~~~~~~~~~~-~~~~~~~~e~~v~~rE~~~g~ 151 (385)
+||||.+.+.|+++.+++|+++|++||+++++. .+++++.|++|+.+.+.++..+ ..+|.+..||.+|.||+.+|+
T Consensus 1206 ~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~ 1285 (1470)
T PLN03140 1206 YWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGM 1285 (1470)
T ss_pred HHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999998765 4677789999988888777655 457899999999999999999
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016645 152 YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGI 231 (385)
Q Consensus 152 Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~ 231 (385)
|++.+|++|++++++|+.++.+++|.+|+|||+|++.+++.|++|++++++..++++++|+++++++||...|..+++++
T Consensus 1286 Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~ 1365 (1470)
T PLN03140 1286 YSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAF 1365 (1470)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCC-CCccHHHHHhhhhCcccccchhh
Q 016645 232 QGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL-PKIPGEYVLENVFQIDVRRSKWI 310 (385)
Q Consensus 232 ~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~-~~~~g~~~L~~~~g~~~~~~~w~ 310 (385)
++++++|||+++|.++||. +|+ |++|+||++|++++++.|||.+.+++|..++. ...++++++...||+++++ .|+
T Consensus 1366 ~~~~~lf~Gf~i~~~~iP~-~~~-W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 1442 (1470)
T PLN03140 1366 YGLFNLFSGFFIPRPKIPK-WWV-WYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDF-MGP 1442 (1470)
T ss_pred HHHHHHHeeeccChHHCch-HHH-HHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCccc-ccc
Confidence 9999999999999999998 577 69999999999999999999999988865542 2357888877779999875 999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645 311 DLSVIFSMIISYRIIFFVMIKISEDVT 337 (385)
Q Consensus 311 ~~~iL~~~~i~~~~l~~~~L~~~~~~~ 337 (385)
+++++++|+++|++++++.+++.+.++
T Consensus 1443 ~~~il~~~~~~f~~~~~~~~~~~~~q~ 1469 (1470)
T PLN03140 1443 VAAVLVGFTVFFAFIFAFCIRTLNFQT 1469 (1470)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999987765
No 4
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.7e-47 Score=418.45 Aligned_cols=328 Identities=16% Similarity=0.176 Sum_probs=287.6
Q ss_pred ccCCCCCCcccccchH----HHHHHHHHHHhcCHHHHHHHHHHHhhhcccC---Cc---cCCCCCCCCHHHHHHHHHHHH
Q 016645 3 LKFETSDDPLEKITTA----EAIKNLIDFYQTSQHSYAAKEKVEGISKVKG---TV---LDAGGSQASFLMQAFTLTKRS 72 (385)
Q Consensus 3 ~~~~np~d~~~~~~~~----~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~s~~~q~~~L~~R~ 72 (385)
++..|||||.+++.+. +..+++++.|++|+.+++..++++....... .. ....++++++++|+++|++|+
T Consensus 1008 p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~ 1087 (1394)
T TIGR00956 1008 PEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRT 1087 (1394)
T ss_pred CCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHH
Confidence 4678999999986543 2345799999999888877766655433211 11 112468899999999999999
Q ss_pred HHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHhhhHHH-HHHhhCCC
Q 016645 73 FVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKVF-QRERLNGH 151 (385)
Q Consensus 73 ~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~v~-~rE~~~g~ 151 (385)
+++.||||.+++.|+++.+++|+++|++|+++++++.+++++.|.+|+.+.+..+.....+|.++.||.++ .||+.+|+
T Consensus 1088 ~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~~~~f~~~r~~~~~RE~~s~~ 1167 (1394)
T TIGR00956 1088 FQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRT 1167 (1394)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcCC
Confidence 99999999999999999999999999999999999999999999999888877777666788999999886 89999999
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHH
Q 016645 152 YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIH-------YLFFVLCLYASVAVVESLMMAIASIVPNFLMG 224 (385)
Q Consensus 152 Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~-------f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a 224 (385)
|++.+|++|++++++|+.++.+++|.+++||++|++.++.. |++|++++++..++++++|+++++++|+...|
T Consensus 1168 Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a 1247 (1394)
T TIGR00956 1168 FSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNA 1247 (1394)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHH
Confidence 99999999999999999999999999999999999987755 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCC-------------------
Q 016645 225 IITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSP------------------- 285 (385)
Q Consensus 225 ~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~------------------- 285 (385)
..++++++.++++|||+++|.++||. +|+ |++|+||++|++++++.|||.+.++.|...
T Consensus 1248 ~~~~~~~~~~~~lf~G~~~~~~~ip~-~~~-w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~pp~~~tC~~y~~~ 1325 (1394)
T TIGR00956 1248 AVLASLLFTMCLSFCGVLAPPSRMPG-FWI-FMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFNPPSGQTCGEYMKP 1325 (1394)
T ss_pred HHHHHHHHHHHHHhccccCChhHCcH-HHh-HHHhcCHHHHHHHHHHHHHcCCCeeecCccccceecCCCCCCHHHHHHH
Confidence 99999999999999999999999999 687 599999999999999999999999888542
Q ss_pred ----------------CC---CCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016645 286 ----------------DL---PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED 335 (385)
Q Consensus 286 ----------------~~---~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~ 335 (385)
.| ...+|+++|+. +|++.+ +.|+|+++++++++++ +++++++++..|
T Consensus 1326 ~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~-~~~~~~-~~w~~~~i~~~~~~~~-~~~~~~l~~~~r 1391 (1394)
T TIGR00956 1326 YLENAGGYLLNPNATDSCSFCQYSYTNDFLEP-ISSKYS-GRWRNFGIFIAFIFFN-IIATVFFYWLAR 1391 (1394)
T ss_pred HHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHH-cCCccc-ccccchhhhhHHHHHH-HHHHHhhheEEE
Confidence 12 24699999999 899876 4999999999999999 777777776543
No 5
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.9e-46 Score=385.92 Aligned_cols=264 Identities=18% Similarity=0.293 Sum_probs=237.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHh-hhhhhh
Q 016645 57 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMS-IGGFPS 135 (385)
Q Consensus 57 ~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~-~~~~~~ 135 (385)
+.++|++|+.+|++|++++ +||+.+...|+++.+++|+++|++|++++ ..+++++.|++|+++.+.++.+ +..++.
T Consensus 384 ~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~--~~~~~~r~g~lff~~~~~~~~~~~~~~~~ 460 (659)
T PLN03211 384 SISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD--FRDVQDRLGLLFFISIFWGVFPSFNSVFV 460 (659)
T ss_pred cCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999998 89999999999999999999999999985 5789999999999988877655 468899
Q ss_pred HHhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016645 136 FVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA 215 (385)
Q Consensus 136 ~~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~ 215 (385)
|+.||++|.||+.+|+|++.+|++||+++++|+.++.+++|.+|+|||+|+++++.+|+.|++++++..+++.++|++++
T Consensus 461 f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~ 540 (659)
T PLN03211 461 FPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALG 540 (659)
T ss_pred HHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCc-----ccCCCCCC---
Q 016645 216 SIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLW-----FDNQSPDL--- 287 (385)
Q Consensus 216 ~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~-----~~~~~~~~--- 287 (385)
+++||...|+.+++++..+++++||++++ +||. +|+ |++|+||++|++++++.|||.+.+ ++|..+.|
T Consensus 541 a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~-~~~-W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~ 616 (659)
T PLN03211 541 AAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPS-CMA-WIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDR 616 (659)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchH-HHH-HHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCC
Confidence 99999999999999999999999999997 7998 455 699999999999999999997653 46754432
Q ss_pred --CCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016645 288 --PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISE 334 (385)
Q Consensus 288 --~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~ 334 (385)
|...++++++ .. +.|.|+++|++++++|++++|+.|++.+
T Consensus 617 ~~c~~~~~~~~~------~~-~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 617 ASCKFVEEDVAG------QI-SPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred CCCccchhhhhc------cc-chHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3334444433 22 4899999999999999999999998754
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.8e-46 Score=407.32 Aligned_cols=331 Identities=14% Similarity=0.218 Sum_probs=288.5
Q ss_pred ccCCCCCCcccccchHH----------------HHHHHHHHHhcCHHHHHHHHHHHhhhccc--C-CccCCCCCCCCHHH
Q 016645 3 LKFETSDDPLEKITTAE----------------AIKNLIDFYQTSQHSYAAKEKVEGISKVK--G-TVLDAGGSQASFLM 63 (385)
Q Consensus 3 ~~~~np~d~~~~~~~~~----------------~~~~l~~~~~~S~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~s~~~ 63 (385)
++.+|||||+.++.+.+ .+++++++|++|+.++...++++...... . ......++..+++.
T Consensus 437 P~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~ 516 (1470)
T PLN03140 437 PERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKME 516 (1470)
T ss_pred CCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHH
Confidence 56789999999876531 14678999999988877776665432211 1 11123568899999
Q ss_pred HHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCc---hhhhhhhhHHHHHHHHHHHHhhhhhhhHHhhh
Q 016645 64 QAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGY---NSILARGSCASFVFGFVTFMSIGGFPSFVEDM 140 (385)
Q Consensus 64 q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~---~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e~ 140 (385)
|+..+++|+++.++||+..+..++++.+++|+++|++|++++.++ .+.+.+.|.+|+.+++.++.++..++.++.||
T Consensus 517 q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r 596 (1470)
T PLN03140 517 LLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRL 596 (1470)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999997543 34566788888888888888888899999999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016645 141 KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPN 220 (385)
Q Consensus 141 ~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~ 220 (385)
++|.|||..++|++++|++|++++++|+.++.+++|++|+|||+|+++++++|+.|++++++..+++.+++.++++++|+
T Consensus 597 ~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~ 676 (1470)
T PLN03140 597 PVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRT 676 (1470)
T ss_pred chhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCC-CCCCCCccHHHHHhhh
Q 016645 221 FLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQ-SPDLPKIPGEYVLENV 299 (385)
Q Consensus 221 ~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~-~~~~~~~~g~~~L~~~ 299 (385)
...|+.++++++.++++++||++|.++||+ +|+ |++|+||++|+++|++.|||.+..+.+. ..+.+..+|+++|+.
T Consensus 677 ~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~-w~~-W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~- 753 (1470)
T PLN03140 677 MIIANTGGALVLLLVFLLGGFILPKGEIPN-WWE-WAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVLNI- 753 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHccceechHhCch-HHH-HHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHHHh-
Confidence 999999999999999999999999999998 455 6999999999999999999988776532 123356899999987
Q ss_pred hCccccc-chhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016645 300 FQIDVRR-SKWIDLSVIFSMIISYRIIFFVMIKISEDV 336 (385)
Q Consensus 300 ~g~~~~~-~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~ 336 (385)
+|++.++ ++|.++++|++++++|+++++++|++.+..
T Consensus 754 ~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~ 791 (1470)
T PLN03140 754 FDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPL 791 (1470)
T ss_pred cCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 9997653 479999999999999999999999987643
No 7
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.7e-45 Score=371.95 Aligned_cols=276 Identities=30% Similarity=0.523 Sum_probs=262.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhhh-hhhhH
Q 016645 58 QASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG-GFPSF 136 (385)
Q Consensus 58 ~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~-~~~~~ 136 (385)
.++||.|++.|++|.+++.+|||.+...|+++.+++++++|++|++++.+..+++++.|+++++..++.+.++. +++.|
T Consensus 333 ~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f 412 (613)
T KOG0061|consen 333 SPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVF 412 (613)
T ss_pred CCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 78999999999999999999999999999999999999999999999999999999999999999999888876 79999
Q ss_pred HhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016645 137 VEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIAS 216 (385)
Q Consensus 137 ~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~ 216 (385)
+.|+++|.||+.+|+|+.++|++|++++++|+.++.+++|.+++|||+|++++..+|++|++++++..++++++|+++++
T Consensus 413 ~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~ 492 (613)
T KOG0061|consen 413 PQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISA 492 (613)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCC--CCCCccHHH
Q 016645 217 IVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSP--DLPKIPGEY 294 (385)
Q Consensus 217 ~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~ 294 (385)
++||...|..+++++..++++++|++++.+++|. |.+|++|+|+++|++|+++.|||.+....|... .||..+|++
T Consensus 493 ~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~--~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 570 (613)
T KOG0061|consen 493 IVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPK--YFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGED 570 (613)
T ss_pred hccchhheeehHHHHHHHHHHHhhhhcCcccccH--HHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHH
Confidence 9999999999999999999999999999999998 344699999999999999999999855667654 578899999
Q ss_pred HHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645 295 VLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT 337 (385)
Q Consensus 295 ~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~ 337 (385)
+++. .+++.+ +.|.|+.++++++++|++++|+.|+++.+..
T Consensus 571 ~l~~-~~~~~~-~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 571 VLKQ-LGFEDS-SFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred HHHh-cCCccc-ccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999 899776 4999999999999999999999999988765
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.6e-42 Score=358.38 Aligned_cols=341 Identities=16% Similarity=0.287 Sum_probs=300.4
Q ss_pred ccCCCCCCcccccchH----------------HHHHHHHHHHhcCHHHHHHHHHHHhhhcccCC---ccCCCCCCCCHHH
Q 016645 3 LKFETSDDPLEKITTA----------------EAIKNLIDFYQTSQHSYAAKEKVEGISKVKGT---VLDAGGSQASFLM 63 (385)
Q Consensus 3 ~~~~np~d~~~~~~~~----------------~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~ 63 (385)
++-+++|||+-++.+. ....++.+.|++|+.++.+..+++....+... ....+.+..+.|.
T Consensus 361 P~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~ 440 (1391)
T KOG0065|consen 361 PPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWE 440 (1391)
T ss_pred CCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHH
Confidence 4557778887766651 13489999999999999988888765443321 2236789999999
Q ss_pred HHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccC-CCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHhhhHH
Q 016645 64 QAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVG-TGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMKV 142 (385)
Q Consensus 64 q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~-~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~v 142 (385)
|+..+++|.+..+.||..++....++.+++++++|++|++.+ .+..+...|.+++|+.+++.++.++..++...+.+++
T Consensus 441 qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv 520 (1391)
T KOG0065|consen 441 QVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPV 520 (1391)
T ss_pred HHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcch
Confidence 999999999999999999999999999999999999999998 6677889999999999999999999999999999999
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 016645 143 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFL 222 (385)
Q Consensus 143 ~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~ 222 (385)
|.|+|....|.+++|.++.++.++|+.++.+++|.+|.||+.|+++++++|+.+++.++++..++.++..++++++++..
T Consensus 521 ~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~ 600 (1391)
T KOG0065|consen 521 FYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLS 600 (1391)
T ss_pred HHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCC------------CCC---
Q 016645 223 MGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQS------------PDL--- 287 (385)
Q Consensus 223 ~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~------------~~~--- 287 (385)
.|+.+|++.+....+.+||++|.++||+ |..|++|+||+.|++++++.|||++++++|.+ ..|
T Consensus 601 ~An~~g~~~~L~i~m~~Gf~Ip~~~m~~--W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~ 678 (1391)
T KOG0065|consen 601 IANLIGGILLLVLFMYGGFVIPKKDMPP--WFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAAT 678 (1391)
T ss_pred HHhhHhHHHHHHHHHHcceeeeccccch--HHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhh
Confidence 9999999999999999999999999998 55579999999999999999999999999982 222
Q ss_pred ------CCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhhh
Q 016645 288 ------PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLAR 346 (385)
Q Consensus 288 ------~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~~~~~~~~~~ 346 (385)
....|.++++..|++++.+ +|++++|+++|.++|.++..+++.+.+..+..--.+..+
T Consensus 679 ~~~~G~~~v~g~~~l~~~~~y~~~~-~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~ 742 (1391)
T KOG0065|consen 679 GATLGNDYVSGRDYLKVQYQYEYKW-YWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFK 742 (1391)
T ss_pred ccccCceEEecccccccccccccce-eEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeec
Confidence 2345666665556666654 999999999999999999999999988776554333333
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.6e-41 Score=351.97 Aligned_cols=333 Identities=17% Similarity=0.199 Sum_probs=291.2
Q ss_pred CccCCCCCCcccccchH----HHHHHHHHHHhcCHHHHHHHHHHHhhhcccCC-c---cCCCCCCCCHHHHHHHHHHHHH
Q 016645 2 KLKFETSDDPLEKITTA----EAIKNLIDFYQTSQHSYAAKEKVEGISKVKGT-V---LDAGGSQASFLMQAFTLTKRSF 73 (385)
Q Consensus 2 ~~~~~np~d~~~~~~~~----~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~s~~~q~~~L~~R~~ 73 (385)
+++++||||+.++..+. +.-.++++.|++|+.++++.++++++..+... . ..+.++++|+|.|++.+++|++
T Consensus 1035 ~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~ 1114 (1391)
T KOG0065|consen 1035 CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQF 1114 (1391)
T ss_pred CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHH
Confidence 56778999999987664 23468999999999999999999887665433 2 2266789999999999999999
Q ss_pred HHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhhh-hhhhHHhhhHHHHHHhhCCCC
Q 016645 74 VNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIG-GFPSFVEDMKVFQRERLNGHY 152 (385)
Q Consensus 74 ~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~-~~~~~~~e~~v~~rE~~~g~Y 152 (385)
..+||+|.|++.|+++.++.|+++|+.||+++++..++++..+.+|+.+.+......+ ..+.+..||.+++||+.+++|
T Consensus 1115 ~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mY 1194 (1391)
T KOG0065|consen 1115 LSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMY 1194 (1391)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcc
Confidence 9999999999999999999999999999999999999999999999988877666555 345566788888999999999
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 016645 153 GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQ 232 (385)
Q Consensus 153 ~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~ 232 (385)
++.+|++|++++|+|+.++++.+|.++.|+++|+..++.++++|++..++..+....+|+++.+++||...|..+.++++
T Consensus 1195 s~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~ 1274 (1391)
T KOG0065|consen 1195 SWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFF 1274 (1391)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCC------CCCccHHHHHhhhhC----c
Q 016645 233 GIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPD------LPKIPGEYVLENVFQ----I 302 (385)
Q Consensus 233 ~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~------~~~~~g~~~L~~~~g----~ 302 (385)
+...+|||++.|.+.||. ||+ |++|+||.+|.++++...++++.+-.|...+ .+-.+..++++..+| +
T Consensus 1275 s~~~~F~G~l~p~~~iP~-fW~-wmy~lsP~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy 1352 (1391)
T KOG0065|consen 1275 SFWNLFSGFLQPRSLIPK-FWI-WMYYLSPVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGY 1352 (1391)
T ss_pred HHHHHhcccccccccccc-eee-eeeecCcHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcce
Confidence 999999999999999999 788 5999999999999999999999999997654 133566777777788 5
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645 303 DVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT 337 (385)
Q Consensus 303 ~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~ 337 (385)
.++. ......+.+.+.+.+..++...+++..+++
T Consensus 1353 ~~n~-~a~~~c~~c~y~v~~~~l~~f~~~y~~~wr 1386 (1391)
T KOG0065|consen 1353 LHNP-LATTACVYCAYTVADAFLAAFNIKYLNFWR 1386 (1391)
T ss_pred eccC-cceeEEEEeeeehHHHHHHHHHHHHHHHHH
Confidence 5442 333445666788889999988888876654
No 10
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.90 E-value=4.9e-25 Score=196.60 Aligned_cols=208 Identities=23% Similarity=0.337 Sum_probs=186.9
Q ss_pred HHHHHHHHHHHHHhhhChhHH-HHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhhhh-hhhHHhhh
Q 016645 63 MQAFTLTKRSFVNMSRDFGYY-WLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGG-FPSFVEDM 140 (385)
Q Consensus 63 ~q~~~L~~R~~~~~~Rd~~~~-~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~-~~~~~~e~ 140 (385)
+|++.+++|+++..+||+... ...++.+++.++++|.+|.+++++.++. ++.+.++..+....+....+ .....+|+
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERER 79 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhccccccccc-ccceeeehhhHHhhhhhcccchhhhhhhc
Confidence 599999999999999999888 9999999999999999999988544555 67777777766666554444 47789999
Q ss_pred HHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 016645 141 KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPN 220 (385)
Q Consensus 141 ~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~ 220 (385)
+.+.||+.++.|++..|++++.+.+++..++.++++.++++++.|++.+ ++..+.+.+++...++.++|.+++.++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~ 157 (210)
T PF01061_consen 80 GTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPS 157 (210)
T ss_pred cccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhh
Confidence 9999999999999999999999999999999999999999999999877 67888888889999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhh
Q 016645 221 FLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDL 275 (385)
Q Consensus 221 ~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef 275 (385)
.+.+..+.+.+..+++++||.+.|.+++|+ |.+|+.+++|.+|++|++..++|
T Consensus 158 ~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~--~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 158 FRDASAISSLILLLLFFLSGVFFPLSSLPS--WLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhcccccccceeeecchHHChH--HHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999996 56679999999999999998775
No 11
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=99.74 E-value=9.6e-16 Score=141.28 Aligned_cols=236 Identities=9% Similarity=-0.001 Sum_probs=168.3
Q ss_pred HHHHHHHHHHHhhhC-hhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhh-----hHHHHHHHHHHHHhhhhh-hhHH
Q 016645 65 AFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARG-----SCASFVFGFVTFMSIGGF-PSFV 137 (385)
Q Consensus 65 ~~~L~~R~~~~~~Rd-~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~-----~~l~~~~~~~~~~~~~~~-~~~~ 137 (385)
...+++|+++.++|+ |......++++++..+++|..+....++..+. +.. |++.+..+..+.. .+. ..+.
T Consensus 7 ~~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~-~y~~f~~pg~l~~~~~~~~~~--~~~~~~~~ 83 (253)
T TIGR01291 7 WAAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGV-SYAAFLAAGMVATSAMTASTF--ETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCC-CHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 566779999999999 99999999999999999999976432211111 111 2221111111111 111 1222
Q ss_pred --hhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016645 138 --EDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA 215 (385)
Q Consensus 138 --~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~ 215 (385)
+|++.+.|-+.... ++..+++||++.+....+++.++...+.++ .|..+. .........+++..+...++|++++
T Consensus 84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24444555555554 899999999999987777777766655544 344333 3455555666667777889999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHH
Q 016645 216 SIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYV 295 (385)
Q Consensus 216 ~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~ 295 (385)
.+.++.+.+..+.+.+..|++++||.+.|.+.+|+ |.+++.+++|.+|+.|++....+
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~--~lq~i~~~nPlt~~v~~~R~~~~-------------------- 218 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLND--VIQGMTHFLPLAHSIDDIRPVML-------------------- 218 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChH--HHHHHHHHCcHHHHHHHHHHHHh--------------------
Confidence 99999999999999999999999999999999998 66679999999999999765432
Q ss_pred HhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016645 296 LENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISE 334 (385)
Q Consensus 296 L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~ 334 (385)
|-+.. +.|.++++++++.+++..++...+|++.
T Consensus 219 -----g~~~~-~~~~~~~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 219 -----GGPGT-QVGLHLGALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred -----CCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 11111 2567899999999999999988777654
No 12
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.73 E-value=1.2e-15 Score=139.24 Aligned_cols=226 Identities=12% Similarity=0.110 Sum_probs=163.5
Q ss_pred HHHHHhhhChhHHHHHHHHHHHHHHHHHhhcccc-CCC--chhhhhh----hhHHHHHHHHHHHHhhhhhhh-HHhhhHH
Q 016645 71 RSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTG--YNSILAR----GSCASFVFGFVTFMSIGGFPS-FVEDMKV 142 (385)
Q Consensus 71 R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~-~~~--~~~i~~~----~~~l~~~~~~~~~~~~~~~~~-~~~e~~v 142 (385)
|+++...|||..+...+++++++.+++|.++... +.+ .++.... .|.+.+.....+.. .+... ..+|+++
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~--~~~~~~~~~~~g~ 78 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF--SGISVIWDRQFGF 78 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHhCH
Confidence 7788999999999999999999999999987543 111 1111111 12222222221111 11111 2233344
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChH
Q 016645 143 FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFL 222 (385)
Q Consensus 143 ~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~ 222 (385)
+.|=+... .+...|+++|.+.+++..+++.++...+.+++.+.+. ..+....+..++...+..++|.+++...++.+
T Consensus 79 ~~~~~~~P-~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~ 155 (236)
T TIGR01247 79 LKEILVAP-ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSME 155 (236)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 44444444 4889999999999999999999999999888877553 34454555566667788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCc
Q 016645 223 MGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQI 302 (385)
Q Consensus 223 ~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~ 302 (385)
.+..+.+.+..+++++||.+.|.+.+|+ |.+|+.+++|.+|+.|++..... |-
T Consensus 156 ~~~~i~~~~~~~l~~lsG~~~P~~~~P~--~~~~i~~~~P~~~~~~~~r~~~~-------------------------~~ 208 (236)
T TIGR01247 156 GFQIIMSMLMLPMFFLSGAFYPITTMPA--WMQGLAKINPLTYAVDGARYYLA-------------------------GV 208 (236)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHhCHH--HHHHHHHHCcHHHHHHHHHHHHh-------------------------CC
Confidence 9999999999999999999999999998 56679999999999999765322 11
Q ss_pred ccccchhhhHHHHHHHHHHHHHHHHH
Q 016645 303 DVRRSKWIDLSVIFSMIISYRIIFFV 328 (385)
Q Consensus 303 ~~~~~~w~~~~iL~~~~i~~~~l~~~ 328 (385)
....+.+.++++|+++++++..++..
T Consensus 209 ~~~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 209 SPTFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHH
Confidence 11113778999999999999888754
No 13
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=99.69 E-value=1.5e-14 Score=133.50 Aligned_cols=235 Identities=10% Similarity=0.041 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhcccc-CC------Cch-hh--hhhhhHHHHHHHHHHHHhhh
Q 016645 62 LMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GT------GYN-SI--LARGSCASFVFGFVTFMSIG 131 (385)
Q Consensus 62 ~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~-~~------~~~-~i--~~~~~~l~~~~~~~~~~~~~ 131 (385)
++++..+++|+++...|||..+...+++++++.+++|.+|... +. +.. +. .-..|++.+...... +.
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~---~~ 77 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNG---MQ 77 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHH---HH
Confidence 3678999999999999999999999999999999999998542 11 100 10 111122211111111 11
Q ss_pred hhhhH--HhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 016645 132 GFPSF--VEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVES 209 (385)
Q Consensus 132 ~~~~~--~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~ 209 (385)
+.... -+|++...+-+.... +...+.+++++......+++.++..++.+. .|.+.+...++.....+++......+
T Consensus 78 ~~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 78 SSLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred hhhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 11122 333345555555554 888999999999988888877666555543 36655544455444555666677889
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCC---CccccccccccccHHHHHHHHHHHHhhCCCcccCCCCC
Q 016645 210 LMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDI---PKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPD 286 (385)
Q Consensus 210 lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~l---p~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~ 286 (385)
+|+++|.+.++.+.+..+.+.+..+++++||.+.|.+.+ |+ |.+|+.++||.+|..|++...-.
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~--~l~~i~~~nPl~~~i~~~R~~~~----------- 222 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEAST--WLYWICALNPFTHAVELVRFALY----------- 222 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccH--HHHHHHHhCcHHHHHHHHHHHHh-----------
Confidence 999999999999999999999999999999999999777 54 67779999999999999865211
Q ss_pred CCCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 016645 287 LPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKI 332 (385)
Q Consensus 287 ~~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~ 332 (385)
| +. -|.++.++.++.+++..++....|+
T Consensus 223 --------------g---~~-~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 223 --------------G---QL-NLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred --------------C---Cc-chhHHHHHHHHHHHHHHHHHHHhhc
Confidence 1 11 3566778888888888888776654
No 14
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.69 E-value=9.4e-15 Score=133.02 Aligned_cols=223 Identities=14% Similarity=0.065 Sum_probs=149.7
Q ss_pred hhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhh-hhhHHHHHHHHHHHHhhhhhhhHHhh--hHHHHHHhhCCCCc
Q 016645 77 SRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILA-RGSCASFVFGFVTFMSIGGFPSFVED--MKVFQRERLNGHYG 153 (385)
Q Consensus 77 ~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~-~~~~l~~~~~~~~~~~~~~~~~~~~e--~~v~~rE~~~g~Y~ 153 (385)
+|||......+.+++++-++++.++.+.. +.+..+. ..+.+.+.....+.. .......+| .+.+.|-+.... +
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~er~~G~l~rl~~~P~-~ 77 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGSV-THNRGATFIPVLMALAAISTAFT--GQAIAVARDRRYGALKRLGATPL-P 77 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCcc-CCcchhHhhHHHHHHHHHHHHHH--HHHHHHHHHHHhCHHHHHhcCCC-c
Confidence 69999999999999999999998886521 1112211 122222222111111 222223333 345556565555 9
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHH
Q 016645 154 VTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVP---NFLMGIITGAG 230 (385)
Q Consensus 154 ~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~---~~~~a~~~~~~ 230 (385)
+..|+++|.+...+..+++..++. +++++.|++..... ...++...+....+.+++.+++.+.+ +.+.+..+++.
T Consensus 78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~ 155 (232)
T TIGR00025 78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL 155 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 999999998888888777655555 44566788765332 23334444444555667777777764 45555888888
Q ss_pred HHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCcccccchhh
Q 016645 231 IQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWI 310 (385)
Q Consensus 231 ~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~~~~~~~w~ 310 (385)
+..+++++||.+.|.+.+|+ |.+|+++++|.+|+.+++......+ .+.+ ..|.
T Consensus 156 ~~~p~~~lSG~~~P~~~mP~--~lq~i~~~~P~t~~~~~~r~~~~~~------------------------~~~~-~~~~ 208 (232)
T TIGR00025 156 VWFIFALLSAGLVPLNLIPT--WIKWFVRVQPSSYATEALRQAATVS------------------------VDTF-GAVR 208 (232)
T ss_pred HHHHHHHHhheeeecccccH--HHHHHHHhCcHHHHHHHHHHHHcCC------------------------CChh-hHHH
Confidence 99999999999999999998 7777999999999999986643221 1111 3788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 016645 311 DLSVIFSMIISYRIIFFVMIKI 332 (385)
Q Consensus 311 ~~~iL~~~~i~~~~l~~~~L~~ 332 (385)
++++++++++++..++...+|+
T Consensus 209 ~~~~l~~~~~v~~~la~~~~~r 230 (232)
T TIGR00025 209 DLVVVLAFWVALAALAAIRLRR 230 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998888776553
No 15
>PRK15066 inner membrane transport permease; Provisional
Probab=99.62 E-value=5.2e-13 Score=123.47 Aligned_cols=242 Identities=12% Similarity=0.145 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHhhhChhH-HHHHHHHHHHHHHHHHhhcccc-CCCchhhhhhhhHHHHHHHHHHHH----hhh-hh
Q 016645 61 FLMQAFTLTKRSFVNMSRDFGY-YWLRLVIYVVVTICIGTIYLNV-GTGYNSILARGSCASFVFGFVTFM----SIG-GF 133 (385)
Q Consensus 61 ~~~q~~~L~~R~~~~~~Rd~~~-~~~~~~~~i~~~l~~G~if~~~-~~~~~~i~~~~~~l~~~~~~~~~~----~~~-~~ 133 (385)
.++-++.+++|+.+...||+.. ...-+++.++..+++|.++... ++. ++. + ...|+..+...+. +.. +.
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~-~~~-~--y~~fl~pGll~~~~~~~~~~~~~ 81 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEM-GGF-S--YMQFIVPGLIMMSVITNSYSNVA 81 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCC-CCC-c--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999865 3444455556666666655321 111 111 1 1112222222111 111 11
Q ss_pred hhHHhhh--HHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 016645 134 PSFVEDM--KVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLM 211 (385)
Q Consensus 134 ~~~~~e~--~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg 211 (385)
....+++ +...|=+... .+...+.+++++......+++.++...+.+...|.++. ........+++........|
T Consensus 82 ~~i~~~~~~~~~~~l~vtp-~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~g 158 (257)
T PRK15066 82 SSFFSAKFQRNIEELLVSP-VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGG 158 (257)
T ss_pred HHHHHHHHhhhHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHH
Confidence 2233333 2222223333 48899999999988877777766666666655566543 23333333334344444558
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCcc
Q 016645 212 MAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIP 291 (385)
Q Consensus 212 ~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~ 291 (385)
++++.+.++.+....+.+.+..|++++||.+.|.+.+|+ |.+|+.++||++|..|++...-+
T Consensus 159 l~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~--~l~~i~~~nPlt~~v~~~R~~~~---------------- 220 (257)
T PRK15066 159 LINAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPP--FWQGVSKLNPIVYMVNAFRYGFL---------------- 220 (257)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChH--HHHHHHHHCcHHHHHHHHHHHHc----------------
Confidence 889988999999999999999999999999999999998 77779999999999999875322
Q ss_pred HHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645 292 GEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVT 337 (385)
Q Consensus 292 g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~ 337 (385)
|.+. ...|.++++++++.+++..++....|+.++.+
T Consensus 221 ---------g~~~-~~~~~~l~~l~~~~~v~~~la~~~~~r~~~~~ 256 (257)
T PRK15066 221 ---------GISD-VPLWLAFAVLLVFIVVLYLLAWYLLERGRGLR 256 (257)
T ss_pred ---------CCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 1111 13688999999999999999998888766543
No 16
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.59 E-value=5.3e-14 Score=125.88 Aligned_cols=152 Identities=9% Similarity=0.051 Sum_probs=126.1
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 016645 152 YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGI 231 (385)
Q Consensus 152 Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~ 231 (385)
-+...++++|.+..++..++++++...+.+++.|++++ ++..+++.+++...++.++|+.+++++++... .++...
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~--~~~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGR--FLALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchH--HHHHHH
Confidence 47788899999999999999999999999999998864 57778888888899999999999999987644 344455
Q ss_pred HHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCcccccchhhh
Q 016645 232 QGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWID 311 (385)
Q Consensus 232 ~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~~~~~~~w~~ 311 (385)
..++++++|.+.|.+.+|+ |.+|+++++|.+|+.+++....+.+ .. .+.|.+
T Consensus 133 ~~~~~~~sG~~~P~~~~P~--~~~~i~~~~P~t~~~~~~r~~~~~~-------------------------~~-~~~~~~ 184 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPA--FFQAIHPFLPMTYSVNGLRQLISGG-------------------------ND-GTLWQA 184 (208)
T ss_pred HHHHHccCCCccchhhCHH--HHHHhhhhCcHHHHHHHHHHHHhCC-------------------------cH-HHHHHH
Confidence 5677778999999999998 5667999999999999997655422 11 237889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 016645 312 LSVIFSMIISYRIIFFVMIKISED 335 (385)
Q Consensus 312 ~~iL~~~~i~~~~l~~~~L~~~~~ 335 (385)
+++|+++.+++.+++....|+++|
T Consensus 185 ~~~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 185 VAVLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999999999999999988887654
No 17
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=99.22 E-value=3.8e-10 Score=95.65 Aligned_cols=132 Identities=11% Similarity=-0.009 Sum_probs=101.6
Q ss_pred hHHhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHH---HHHHHHHHHHHHHHHHH
Q 016645 135 SFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYL---FFVLCLYASVAVVESLM 211 (385)
Q Consensus 135 ~~~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~---~~~l~l~l~~~~~~~lg 211 (385)
..-+|+..+.|-+.... +...|+++|++......+++.++..++.+. .|++... .+. .+.+...+.......++
T Consensus 13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~-~~~~~~~~~~~~~l~~~~f~~l~ 89 (152)
T TIGR01248 13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRN-GVAAALLFLLIPSIFGIAFAALV 89 (152)
T ss_pred HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677788887777 999999999999999999998888888854 4887763 333 23333344455566666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHH
Q 016645 212 MAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQ 272 (385)
Q Consensus 212 ~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~ 272 (385)
..++...++.+..+ ..+.+..|++++||.+.|.+++|+ |.+|+.+++|.+|+.+++..
T Consensus 90 ~~~a~~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~--wlq~ia~~~Plt~~~~~~R~ 147 (152)
T TIGR01248 90 MAMALRKEGRFAME-ALELAQAAAAFLNPGATPIKLFPD--WAQPLIAHQPISPAIEACAD 147 (152)
T ss_pred HHHHHHcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcH--HHHHHHhhCCccHHHHHHHH
Confidence 77766666665444 457788999999999999999998 88899999999999999864
No 18
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=99.22 E-value=2.3e-09 Score=99.55 Aligned_cols=170 Identities=13% Similarity=0.203 Sum_probs=124.9
Q ss_pred hhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH-H
Q 016645 138 EDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA-S 216 (385)
Q Consensus 138 ~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~-~ 216 (385)
++.+.+.|-..+.. +...+++++.+.......+...+...+..+..|.. ....+......+.+......++|.+++ .
T Consensus 115 ~~~g~~~~~~~sp~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~ 192 (286)
T COG0842 115 REFGTLERLLVSPV-SRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTF 192 (286)
T ss_pred HhhCcHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555 44566666666666665555555555555566633 334566666777777777888888666 3
Q ss_pred hcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHH
Q 016645 217 IVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVL 296 (385)
Q Consensus 217 ~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L 296 (385)
..++...+..++..+..++.+++|.+.|.+.+|+ |.+++.+++|.+|+.+++......+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~--~~~~i~~~~P~t~~~~~~~~~~~~~------------------- 251 (286)
T COG0842 193 AKSQLQCASAVGNLLILPLGFLSGVFFPLELLPA--WLQGISYINPLTYAIDALRYVYLGG------------------- 251 (286)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHccccCchhhhHH--HHHHHHHHccHHHHHHHHHHHHhCC-------------------
Confidence 6677888888898999999999999999999998 6777999999999999987644322
Q ss_pred hhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016645 297 ENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDV 336 (385)
Q Consensus 297 ~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~ 336 (385)
...+ +.|.++++++++.+++.+++...+|++++.
T Consensus 252 -----~~~~-~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 252 -----WRND-GIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred -----Cchh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 1111 378999999999999999999988887654
No 19
>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.98 E-value=3.4e-07 Score=84.32 Aligned_cols=237 Identities=13% Similarity=0.088 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHHhhhC-hhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhh-----hhhh
Q 016645 61 FLMQAFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSI-----GGFP 134 (385)
Q Consensus 61 ~~~q~~~L~~R~~~~~~Rd-~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~-----~~~~ 134 (385)
.++..+.|.+|+++...|+ .......++.++++.++++.+|...-... ..+ -..+...+...+... .+..
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~--~~~--~~~~l~~G~~~w~f~~~~i~~~~~ 91 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP--GLN--FLAYLLAGLILWFFFSEAISEGAG 91 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC--Ccc--hHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4677888999999986664 44577788888888888888886543221 011 111222222222111 1233
Q ss_pred hHHhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 016645 135 SFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAI 214 (385)
Q Consensus 135 ~~~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i 214 (385)
.+.+..+++.+- ..++..+.+++++.++....+..++....+-+..+.+ ..++..+...+.+..+.+.++|+.+
T Consensus 92 s~~~n~~li~k~----~~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~ 165 (263)
T COG1682 92 SVVANAALIKKI----NFPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLIL 165 (263)
T ss_pred HhhhhHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444332 1388999999999998777666655555554444433 4566666667777777788899999
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHH
Q 016645 215 ASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEY 294 (385)
Q Consensus 215 ~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~ 294 (385)
|.+..-...-..+-..+..+++..+|.+.|.+.+|+. +++ +.++||+.|..|.....-+.+..
T Consensus 166 a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~-~~~-~~~~NP~~~iie~~R~~~~~~~~--------------- 228 (263)
T COG1682 166 ASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQ-LRE-LVLLNPLTHIIESFRAPLLGGDV--------------- 228 (263)
T ss_pred HhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHH-HHH-HHHHCcHHHHHHHHHHHHhCCCc---------------
Confidence 9987777777777788889999999999999999983 554 99999999999998775553311
Q ss_pred HHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016645 295 VLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDV 336 (385)
Q Consensus 295 ~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~ 336 (385)
..+.+....++..++..+++++..++.+++
T Consensus 229 ------------~~~~~~~~~~~~~li~l~vg~~~~~~~~~~ 258 (263)
T COG1682 229 ------------PDLHLLVYILLLTLILLFVGLLLFRKFRKR 258 (263)
T ss_pred ------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 134455566666666666777666665543
No 20
>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.88 E-value=1.6e-06 Score=79.17 Aligned_cols=220 Identities=13% Similarity=0.130 Sum_probs=126.5
Q ss_pred HHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccc----cCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHhhhH
Q 016645 66 FTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLN----VGTGYNSILARGSCASFVFGFVTFMSIGGFPSFVEDMK 141 (385)
Q Consensus 66 ~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~----~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~ 141 (385)
+.+.||+++...|.|..+..-.+..++.|+.. ..+.+ ...+..+.+...+...+ .+.......+. .
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~p~l~~-------~ 71 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAPW--VFLFLIPAITM-------R 71 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHHH--HHHHHHHHHHH-------H
Confidence 46889999999999999977777766666432 22211 11122222222211111 11111111122 3
Q ss_pred HHHHHhhCCC--------CchHHHHHHHHHHHhhHHHHHHHHH--hhhhhhccccc---cchhHHHHHHHHHHHHHHHHH
Q 016645 142 VFQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFIS--GTICYFMVRLH---PGFIHYLFFVLCLYASVAVVE 208 (385)
Q Consensus 142 v~~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~--~~i~y~~~g~~---~~~~~f~~~~l~l~l~~~~~~ 208 (385)
.+.+||++|. -+...++++|.+..+...++..+.. ..+.....|.+ .+.+.+....+..++...+..
T Consensus 72 ~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 151 (240)
T TIGR03518 72 SFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVYT 151 (240)
T ss_pred HHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHH
Confidence 4445555554 3789999999999876544333211 11111122222 234445545555566667888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCC--CccccccccccccHHHHHHHHHHHHhhCCCcccCCCCC
Q 016645 209 SLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDI--PKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPD 286 (385)
Q Consensus 209 ~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~l--p~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~ 286 (385)
++|++++++.++...|..++..+...+.+..+. ..++ |+ |.+|+.++||.+|-.+.. .
T Consensus 152 aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~---l~~~~~~~--~~~~l~~~sp~~~~~~~~-~-------------- 211 (240)
T TIGR03518 152 AIGLFASSLTENQIVAFIIAVFLCFLFYFGFDG---LASLLWGG--SAYTISELGLSYHYESIS-R-------------- 211 (240)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH---Hhhhcchh--HHHHHHHcCHHHHHHHHH-c--------------
Confidence 999999999999888876665543333221122 2233 44 566799999988765432 1
Q ss_pred CCCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016645 287 LPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKIS 333 (385)
Q Consensus 287 ~~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~ 333 (385)
|. =.+.|+...+.+++++..++...+++|
T Consensus 212 --------------g~----i~~~~~v~~~~~~~~~l~l~~~~~~~r 240 (240)
T TIGR03518 212 --------------GV----IDSRDVIYFLSITVLFLALTKLQLKSR 240 (240)
T ss_pred --------------Cc----ccHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 10 035678899999999988888766543
No 21
>PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional
Probab=98.72 E-value=7.4e-06 Score=75.81 Aligned_cols=239 Identities=9% Similarity=0.037 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHhhhC-hhHHHHHHHHHHHHHHHHHhhccccCCC-chhhhhhhhHHHHHHHHHHHHhhhhhhhHHhh-
Q 016645 63 MQAFTLTKRSFVNMSRD-FGYYWLRLVIYVVVTICIGTIYLNVGTG-YNSILARGSCASFVFGFVTFMSIGGFPSFVED- 139 (385)
Q Consensus 63 ~q~~~L~~R~~~~~~Rd-~~~~~~~~~~~i~~~l~~G~if~~~~~~-~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e- 139 (385)
.-++.|++|+++...|+ ...+...++.+++..+++..+|-.+... ..+ ..+..|..++...+..+.....-...
T Consensus 19 ~li~~L~~rdlk~ry~~s~LG~~W~~l~Pll~~~v~~~vF~~~~~~~~~~---~~~~~fl~~Gl~pw~~fs~~~~~~~~a 95 (264)
T PRK15176 19 ELIILLMSRDIKTRYNGNLLNYMMVLAVPLVWISITVISFQYLNRSVPIS---TDDISFVIAGILPYLLFRYTITATMRT 95 (264)
T ss_pred HHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677899999987665 4456778888888888888877543211 111 01224555444444433221110000
Q ss_pred hHHHHH-HhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhh-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016645 140 MKVFQR-ERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYF-MVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASI 217 (385)
Q Consensus 140 ~~v~~r-E~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~-~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~ 217 (385)
..+-.. ..-.+. .....+++....++...++..++...+.+. ..+..+. ........+++..+.+.++|+++|++
T Consensus 96 ~si~~~~~li~kv-~~p~~i~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~l~~~~~~ll~~l~~~glglils~l 172 (264)
T PRK15176 96 HSFSTSLAVVSQV-KKRHVIFSLAAIEFVNAVIIYIIISLINFLIFSRWEAQ--KPFLIFEGMVIAWLLGLSFGYFCDAL 172 (264)
T ss_pred HHHHHHhhcCCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChh--hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111 111112 222233333333433322222222121122 1233332 22222333344555566788888877
Q ss_pred cCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHh
Q 016645 218 VPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLE 297 (385)
Q Consensus 218 ~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 297 (385)
..-......+.+.+..+++..+|.+.|.+.+|+. ++ ++.++||+.+..|+....-+.+.
T Consensus 173 ~v~~rDi~~i~~~~l~~lf~~SpI~y~~~~vp~~-~~-~il~~NPl~~~ie~~R~~~~~~~------------------- 231 (264)
T PRK15176 173 SERFPLVYKAVPVMLRPMFLISAVFYTANELPYS-LL-SIFSWNPLLHANEIVREGMFEGY------------------- 231 (264)
T ss_pred HHhCccHHHHHHHHHHHHHHHhhHhhhHHhCcHH-HH-HHHHHCcHHHHHHHHHHHHhcCc-------------------
Confidence 5444445556667888899999999999999983 44 48899999999999877555321
Q ss_pred hhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016645 298 NVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDV 336 (385)
Q Consensus 298 ~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~ 336 (385)
. ..|.++..++++.++..+++++..|+.+..
T Consensus 232 -----~---~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~ 262 (264)
T PRK15176 232 -----H---SLYLEPFYPLAFSATLFLAGLIFHLICDTE 262 (264)
T ss_pred -----C---ccccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0 123455778888888888887777766543
No 22
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=98.65 E-value=1e-05 Score=75.20 Aligned_cols=167 Identities=15% Similarity=0.199 Sum_probs=94.9
Q ss_pred HHHHHhhCCC--------CchHHHHHHHHHHHhhHHH---HHHHHHhh---hhhhccccccchhHHHHHHHHHHHHHH--
Q 016645 142 VFQRERLNGH--------YGVTAFVIGNTLSAMPFLI---MITFISGT---ICYFMVRLHPGFIHYLFFVLCLYASVA-- 205 (385)
Q Consensus 142 v~~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~---i~~~i~~~---i~y~~~g~~~~~~~f~~~~l~l~l~~~-- 205 (385)
.+.+|+++|. ++...++++|.+......+ +...+... ......|.+.+...+....+......+
T Consensus 89 ~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (277)
T PF12679_consen 89 LIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLAV 168 (277)
T ss_pred HHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHH
Confidence 4455555554 5889999999999887632 21111111 112224455555554444433333333
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccc-CCCCCCccccc--cccccccHHHHHHHHHHHHhhCCCccc
Q 016645 206 -VVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFR-LPNDIPKPVWR--YPMSYLSFHYWALQGQYQNDLKGLWFD 281 (385)
Q Consensus 206 -~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~-~~~~lp~~~w~--~~l~~isp~~y~~~al~~nef~~~~~~ 281 (385)
+..++++++|+++++...|..++..+.....+...... ..++.....|. ..+.+++|..+- +.+......+
T Consensus 169 ~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~---- 243 (277)
T PF12679_consen 169 LVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSPF-NLLIGSILGG---- 243 (277)
T ss_pred HHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHHH-HHHHHHhhcc----
Confidence 45899999999999999998888876655544333322 11121110011 114666666533 2222211110
Q ss_pred CCCCCCCCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHh
Q 016645 282 NQSPDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKIS 333 (385)
Q Consensus 282 ~~~~~~~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~ 333 (385)
-+.+ ...|.++++++++++++.+++++.++++
T Consensus 244 ------------------~~~~--~~~~~~~~~~~~~~~v~l~la~~~F~rr 275 (277)
T PF12679_consen 244 ------------------GFVW--LSTWPSLLILLAYTLVFLALAYYRFQRR 275 (277)
T ss_pred ------------------ccch--hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0000 2378999999999999999999766655
No 23
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=98.55 E-value=1.1e-07 Score=74.67 Aligned_cols=62 Identities=11% Similarity=0.270 Sum_probs=52.2
Q ss_pred CCCCCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcccCccchhhhhhh
Q 016645 285 PDLPKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISEDVTPWIRGCLARR 347 (385)
Q Consensus 285 ~~~~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~~~~~~~~~~~ 347 (385)
+|....+|++||+..||+..++ +|+|++|+++|+++|.++.++++.+.+..+.....+..+|
T Consensus 26 ~G~~~V~G~~YL~~~y~y~~sh-~WRN~GIli~f~i~f~~~~~~~~e~~~~~~~~~~~l~f~r 87 (103)
T PF06422_consen 26 PGSTYVSGDDYLEESYGYSYSH-RWRNFGILIAFWIFFIVLTLLATEFIKFEKSGGEVLVFKR 87 (103)
T ss_pred CCccEEeHHHHHhhhccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHhcccCCCccEEEEeC
Confidence 3457789999999769999886 9999999999999999999999999888877755444443
No 24
>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A.
Probab=98.45 E-value=3.4e-08 Score=93.97 Aligned_cols=158 Identities=20% Similarity=0.257 Sum_probs=0.0
Q ss_pred hHHhhhHH--HHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccc---cccchhHHHHHHHHHHHHHHHHHH
Q 016645 135 SFVEDMKV--FQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVR---LHPGFIHYLFFVLCLYASVAVVES 209 (385)
Q Consensus 135 ~~~~e~~v--~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g---~~~~~~~f~~~~l~l~l~~~~~~~ 209 (385)
...+||+- ..|-+..|. +...|+++|++..+...++..++...+ ..| ++.. ++...++.+++..++..+
T Consensus 181 ~i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~ 254 (344)
T PF12698_consen 181 SIVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFIS 254 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHH
Confidence 34555544 444456665 999999999999999988888776664 344 4433 555566778888888999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCC
Q 016645 210 LMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPK 289 (385)
Q Consensus 210 lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~ 289 (385)
++.+++.++++...+..++.++..+++.++|.+.|.+.+|+ |..++.++.|..|..+++....
T Consensus 255 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~P~~~~~~~~~~~~--------------- 317 (344)
T PF12698_consen 255 FGFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPS--FLQWISSFLPFYWFIQGLRNII--------------- 317 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHH--HHHHHHHHhhHHHHHHHHHHHH---------------
Confidence 99999999999999988888888877788888888888887 4445888999999888865422
Q ss_pred ccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHH
Q 016645 290 IPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFF 327 (385)
Q Consensus 290 ~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~ 327 (385)
+|- . .+.|.++++++++++++.++++
T Consensus 318 ----------~~~-~-~~~~~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 318 ----------YGD-W-SEIWISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp --------------------------------------
T ss_pred ----------Hhc-H-HHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1 1367888899999988887765
No 25
>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []. These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane
Probab=97.97 E-value=0.00071 Score=60.66 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhh-hhhHHHHHHHHHHHHhhhhhhhHHhhhHHH
Q 016645 65 AFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILA-RGSCASFVFGFVTFMSIGGFPSFVEDMKVF 143 (385)
Q Consensus 65 ~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~-~~~~l~~~~~~~~~~~~~~~~~~~~e~~v~ 143 (385)
++.+.||+++.-+|++.....-+...+....++...+ +.+.+.... ..|.+.....+.+..+. . +.|
T Consensus 1 ~~~l~~kdl~le~r~~~~~~~~~lf~l~~i~if~~al---~~~~~~l~~~~~gllWi~~lfa~~l~~---~------r~f 68 (215)
T PF03379_consen 1 FLALFRKDLRLEFRSKEGLLSMLLFFLLVIVIFSFAL---GPDPDLLARVAPGLLWIALLFASLLGL---N------RSF 68 (215)
T ss_pred CHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHhhc---CCchhHHHHHhHHHHHHHHHHHHHHHh---h------HhH
Confidence 3678999999999999887766666666655555543 333333332 33444433333332222 1 256
Q ss_pred HHHhhCCC--------CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 016645 144 QRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIA 215 (385)
Q Consensus 144 ~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~ 215 (385)
.+|+++|. .++..++++|.+....+..+..++...+...+.|.+. ..+..+.+.+.+.......+|.+.+
T Consensus 69 ~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~--~~~~~~~~~l~lgt~gl~~igtl~a 146 (215)
T PF03379_consen 69 AREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI--SSWPLLLLSLLLGTLGLAAIGTLLA 146 (215)
T ss_pred HHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 67777766 2678899999999988887777777777777777764 4566677777777788888888888
Q ss_pred HhcCChHHHHHHHHHHHHHHH
Q 016645 216 SIVPNFLMGIITGAGIQGIFM 236 (385)
Q Consensus 216 ~~~~~~~~a~~~~~~~~~~~~ 236 (385)
++.-+........++...|+.
T Consensus 147 al~~~~r~~~~Ll~lL~lPl~ 167 (215)
T PF03379_consen 147 ALAAGARGREILLPLLLLPLL 167 (215)
T ss_pred HHHHhccccCHHHHHHHHHHH
Confidence 876555545555555555544
No 26
>COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only]
Probab=97.93 E-value=0.0033 Score=58.52 Aligned_cols=249 Identities=14% Similarity=0.192 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhcc-cc---CCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHhh
Q 016645 64 QAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYL-NV---GTGYNSILARGSCASFVFGFVTFMSIGGFPSFVED 139 (385)
Q Consensus 64 q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~-~~---~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~e 139 (385)
+...+.+++++...|+|..+.......+..++.....+. .. +.....................+.. +-...--
T Consensus 3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ 79 (278)
T COG1277 3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLLFLSSVSLVFSFFLP---LLAILLG 79 (278)
T ss_pred hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhhhhhhHHHHHHHHHH---HHHHHHc
Confidence 577889999999999998887766555555555555542 11 1111111000111111111111111 1111112
Q ss_pred hHHHHHHhhCCC--------CchHHHHHHHHHHHhhHHHHHHHHHh---hhhhhccccccch---hHHHHHHHHHHHHHH
Q 016645 140 MKVFQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISG---TICYFMVRLHPGF---IHYLFFVLCLYASVA 205 (385)
Q Consensus 140 ~~v~~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~~---~i~y~~~g~~~~~---~~f~~~~l~l~l~~~ 205 (385)
-.++.+|+.+|. .+...-+.||.+..+....+..++.. .......|...+. .....+....++...
T Consensus 80 ~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (278)
T COG1277 80 ADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLYGL 159 (278)
T ss_pred cchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHH
Confidence 234555666655 57788899999988766555555444 2233444544433 245677777888888
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccC------CCCCCccccccccccccHHHHHHHHHHHHhhCCCc
Q 016645 206 VVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRL------PNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLW 279 (385)
Q Consensus 206 ~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~------~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~ 279 (385)
...+++.+++...++...+..++..+.....+..+.... ....| +...+...+|..+..+......... .
T Consensus 160 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~-~ 235 (278)
T COG1277 160 VLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAP---TLNTLSLLLPLYLLAELAFTILLQS-G 235 (278)
T ss_pred HHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh---hhHHHhccCHHHHHHHHhhhhcccc-c
Confidence 889999999999999988888877766666554444332 11111 1122677888888877755433211 0
Q ss_pred ccCCCCCCCCccHHHHHhhhhCccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016645 280 FDNQSPDLPKIPGEYVLENVFQIDV-RRSKWIDLSVIFSMIISYRIIFFVMIKISE 334 (385)
Q Consensus 280 ~~~~~~~~~~~~g~~~L~~~~g~~~-~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~ 334 (385)
+. + .+ .+... ....|.++.+++++.+++..++++..++++
T Consensus 236 ~~----~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~d 276 (278)
T COG1277 236 FS----D----SI-------LTLNESLLLAWFNILILIIYILIFLSIAYLIFKRRD 276 (278)
T ss_pred cc----c----cc-------ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 00 0 00 11111 124789999999999999999999777664
No 27
>COG4587 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.72 E-value=0.0069 Score=54.15 Aligned_cols=247 Identities=10% Similarity=-0.009 Sum_probs=133.6
Q ss_pred CHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCch---h--hhhhhhHHHHHHHHHHHHhhhhhh
Q 016645 60 SFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYN---S--ILARGSCASFVFGFVTFMSIGGFP 134 (385)
Q Consensus 60 s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~---~--i~~~~~~l~~~~~~~~~~~~~~~~ 134 (385)
++++.+..+.+-.+..+.-.+.....-.+..++-+++.+.++-.+-++.+ + ..+....++............++-
T Consensus 3 ~f~rky~~l~~v~~~~~~eYR~~~il~~l~~~l~~~l~~~lW~a~adss~~i~glt~~d~~~Y~~~~fvv~~lt~~~~~~ 82 (268)
T COG4587 3 KFWRKYRVLLSVGLASMLEYRVNFILWRLSGLLPLILMGYLWVAVADSSPQINGLTPGDVARYFFATFVVRQLTTVWSIW 82 (268)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhccCccccCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888988888888888887777777777777777777755433222 1 222222222222111112122222
Q ss_pred hHHhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHH---hhhhhhcc-c---cccchhHHHHHHHHHHHHHHHH
Q 016645 135 SFVEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFIS---GTICYFMV-R---LHPGFIHYLFFVLCLYASVAVV 207 (385)
Q Consensus 135 ~~~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~---~~i~y~~~-g---~~~~~~~f~~~~l~l~l~~~~~ 207 (385)
.+ |+++-.-|-.-..-+|..|+..+...+.+..+...+.+ .+..|.+. | .-++......+.+.+.+....-
T Consensus 83 ef--~~eV~~G~l~~~LLrPld~l~~~~a~~~~~~~~~~lp~~~vL~lifa~l~~~~~~~l~~~~l~~~~l~la~~~~~~ 160 (268)
T COG4587 83 EF--EKEVREGELSPRLLRPLDYLFHELAAHLGERASRGLPFLLVLLLIFALLYGAILQFLSPWTLYLFVLALALLFLLR 160 (268)
T ss_pred HH--HHHHHcCeecHHhcCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence 22 22222222222223555666665555544333221111 11122222 2 1123334444444443333333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCC
Q 016645 208 ESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDL 287 (385)
Q Consensus 208 ~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~ 287 (385)
-.+-..+++.+=-.+.|+.++........+.||.+.|++-.|+ |..-+--..|+-|...-
T Consensus 161 F~i~f~~~~~aFwt~~as~l~~~~~~l~~f~sG~l~PL~~fP~--~v~~il~ftPFpy~~y~------------------ 220 (268)
T COG4587 161 FLIQFTFGLFAFWTERASSLGKFWWLLYAFLSGSLAPLAFFPD--WVRAILAFTPFPYLLYT------------------ 220 (268)
T ss_pred HHHHHHHHHHHhhccchhhHHHHHHHHHHHhccccchHHhChH--HHHHHHHhCCchhhhcc------------------
Confidence 3444455555444566888888888999999999999999998 54434444555554221
Q ss_pred CCccHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016645 288 PKIPGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED 335 (385)
Q Consensus 288 ~~~~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~ 335 (385)
....+ .|-......|.++++.+++..++-++.-+..|+..+
T Consensus 221 ----P~~ll---vGk~s~~~il~al~v~~~Wl~im~~l~~~lWrrgl~ 261 (268)
T COG4587 221 ----PVMLL---VGKYSGAQILKALLVQIGWLLIMWLLSRWLWRRGLK 261 (268)
T ss_pred ----HHHHH---hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11222 121111238888999999999998888887776543
No 28
>TIGR01190 ccmB heme exporter protein CcmB. This model describes the cyt c biogenesis protein encoded by ccmB in bacteria. Bacterial c-type cytochromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome C.
Probab=97.67 E-value=0.0037 Score=55.52 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=96.7
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhh-hHHHHHHHHHHHHhhhhhhhHHhhhHHHHHHh
Q 016645 69 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARG-SCASFVFGFVTFMSIGGFPSFVEDMKVFQRER 147 (385)
Q Consensus 69 ~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~~e~~v~~rE~ 147 (385)
.+|+++.-+|++.....-++..++...++..- .+.+.+-.+... |.+.....+....+. . +.|.+|+
T Consensus 2 ~~kDl~l~~r~~~~~~~~llF~l~vi~lf~la---~gp~~~~l~~~apgilWva~lfa~ll~l---~------rlF~~d~ 69 (211)
T TIGR01190 2 IRRDLRLAFRAGGGILNPLWFFLIVVTLFPFG---VGPELKLLSRIAPGIVWVGALLSSLLSL---D------RLFRDDF 69 (211)
T ss_pred cHHHHHHHHcccchHHHHHHHHHHHHHHHHhh---cCCcHHHHHHHHHHHHHHHHHHHHHHHh---h------HHHHHHH
Confidence 58999999999887766655555555554443 344444344433 344433333332222 2 3677777
Q ss_pred hCCC--------CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016645 148 LNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVP 219 (385)
Q Consensus 148 ~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~ 219 (385)
++|. .+....+++|.++......+.-++..-+.-.+.|++. .....+.+++.+.......+|.+.++++-
T Consensus 70 e~g~Le~lll~p~~~~~i~l~K~la~wl~~~l~~~l~~p~~~~~l~~~~--~~~~~l~l~LllGt~~Ls~igtl~aALt~ 147 (211)
T TIGR01190 70 EDGSLDLLMLSPTPLELTVLAKVLAHWLVTGLPLVLLSPLLALLLNLDV--PAWGALALTLLLGTPALSFLGAIGAALTV 147 (211)
T ss_pred hCCcHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7775 3788899999999987776666666666666777754 34466777888888888888888888755
Q ss_pred ChHHHHHHHHHHHHHHH
Q 016645 220 NFLMGIITGAGIQGIFM 236 (385)
Q Consensus 220 ~~~~a~~~~~~~~~~~~ 236 (385)
+........+++..|+.
T Consensus 148 g~r~~~~Ll~lL~lPl~ 164 (211)
T TIGR01190 148 GLKRGGLLLSLLVLPLY 164 (211)
T ss_pred hccCCchHHHHHHHHHH
Confidence 43333334444444433
No 29
>TIGR03733 lanti_perm_MutG lantibiotic protection ABC transporter permease subunit, MutG family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene modeled separate by TIGR03732, while in some species only one subunit is found.
Probab=97.20 E-value=0.17 Score=46.29 Aligned_cols=187 Identities=12% Similarity=0.096 Sum_probs=91.8
Q ss_pred HHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhcccc-CCCchhhhhhhhHHHHHHHHHHHHhhh-hhhhHHhhhHHHHHH
Q 016645 69 TKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV-GTGYNSILARGSCASFVFGFVTFMSIG-GFPSFVEDMKVFQRE 146 (385)
Q Consensus 69 ~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~-~~~~~~i~~~~~~l~~~~~~~~~~~~~-~~~~~~~e~~v~~rE 146 (385)
.+=+++.+.|.+... ..++.+++..++... |... +.+........... ..+.+....++. +...-.||++--.|.
T Consensus 3 l~aE~lK~Krt~~~~-l~l~~Pl~~~ll~~~-~~~~~~~~~~~~~~~~~~~-~~~~~P~~i~i~~~~~~~~E~~~~~~k~ 79 (248)
T TIGR03733 3 LKSDFIKLKRTSILW-IHICAPILGSLLFLL-YYSFRGLDNIDIIEGYFQV-LAIVLPLLIGIVCGMVVEQEESAGNFKN 79 (248)
T ss_pred HHHHHHHHcchhHHH-HHHHHHHHHHHHHHH-HHHhcCCCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhChHHH
Confidence 345566666765444 466666666666544 4332 22211111100000 011111111111 111122222223333
Q ss_pred hhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhh-----hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh
Q 016645 147 RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICY-----FMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNF 221 (385)
Q Consensus 147 ~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y-----~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~ 221 (385)
-.....+...+++||++..+...++..++...+.. ...+-+.+...++...+.+++..+....+.+.++....+.
T Consensus 80 ll~~p~s~~~~~~aK~l~~~~~~~is~~l~~~~~~~g~~~i~~~~~~~~~~~l~~~~~l~~~sl~~~~l~l~ls~~~g~~ 159 (248)
T TIGR03733 80 LLSTTKSKYKAYLSKLLLLLLCGFFSTFLAIGIFALGFKYLLKVANLPLSLFLIAALLLIIGSLFLYIIHLFVSFAFGMG 159 (248)
T ss_pred HhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 34434578899999999887666665443222221 1112233444566677777888888888999999888753
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHH
Q 016645 222 LMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQ 270 (385)
Q Consensus 222 ~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al 270 (385)
.+..++.. ..++++++. ..+.+.+| ++.|..|..+.+
T Consensus 160 -~si~ig~~----g~l~~~~~~--t~lg~~~w-----~~~P~sw~~rl~ 196 (248)
T TIGR03733 160 -ASIGIGIV----GTLMAALML--TGLGDKIW-----QYIPWAWGVRLS 196 (248)
T ss_pred -hhHHHHHH----HHHHHHHHH--hccccCce-----eEeehHHHHHHH
Confidence 33333322 122333332 23433234 446777777765
No 30
>PF12051 DUF3533: Protein of unknown function (DUF3533); InterPro: IPR022703 This transmembrane domain is functionally uncharacterised. It is found in bacterial and eukaryotic proteins.
Probab=97.15 E-value=0.027 Score=55.18 Aligned_cols=137 Identities=10% Similarity=0.051 Sum_probs=88.9
Q ss_pred chHHHHHHHHHHHhhHHHHHHHHHhhhhhhccc--cccch--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 016645 153 GVTAFVIGNTLSAMPFLIMITFISGTICYFMVR--LHPGF--IHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITG 228 (385)
Q Consensus 153 ~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g--~~~~~--~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~~ 228 (385)
++..|++-|.+......++.++.++.+. +..+ +...+ ++|+.+|...++...+.-...-.+..+.+..- ..+-
T Consensus 240 ~~~~~~~~R~~~~~~~~~~~Sl~~~~v~-~af~~~~~~~~g~~gf~v~Wm~~~l~m~a~g~~~e~~~~~i~~~~--~~~~ 316 (382)
T PF12051_consen 240 KPRHYLIYRWIISWIAYFFLSLFYSLVS-LAFQVDFTVAFGKGGFVVYWMFSWLYMSAVGLANENVISIIGPPF--MPFW 316 (382)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccch--HHHH
Confidence 8888999999999999999999998887 3433 33333 34888877766655543332222223333222 2222
Q ss_pred HHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCcccccch
Q 016645 229 AGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSK 308 (385)
Q Consensus 229 ~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~~~~~~~ 308 (385)
.++.+++-+.+ -+.|.+-.|. |++| .+-. |++.+++++...-|++ .. +..
T Consensus 317 ll~wvi~nv~~-~~~P~el~p~-fyr~-gya~-P~~n~~~~~r~I~fd~-------------------------~~-~~l 366 (382)
T PF12051_consen 317 LLFWVILNVSS-TFYPLELSPG-FYRY-GYAM-PMHNIYEGLRVIFFDT-------------------------CK-GQL 366 (382)
T ss_pred HHHHHHHhccc-ccCChhhCcc-HHHH-hhhh-hHHHHHHHHHHheeCC-------------------------Cc-ccc
Confidence 22333333444 6778898998 6775 6666 9999999998864432 22 137
Q ss_pred hhhHHHHHHHHHHH
Q 016645 309 WIDLSVIFSMIISY 322 (385)
Q Consensus 309 w~~~~iL~~~~i~~ 322 (385)
.+++++|++++++-
T Consensus 367 g~n~gil~aw~~v~ 380 (382)
T PF12051_consen 367 GRNYGILFAWIVVN 380 (382)
T ss_pred cchHHHHHHHHHHH
Confidence 78899999998864
No 31
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=97.05 E-value=0.0018 Score=45.84 Aligned_cols=49 Identities=16% Similarity=0.322 Sum_probs=43.1
Q ss_pred CCccHHHHHhhhhCcccc-cchhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645 288 PKIPGEYVLENVFQIDVR-RSKWIDLSVIFSMIISYRIIFFVMIKISEDVT 337 (385)
Q Consensus 288 ~~~~g~~~L~~~~g~~~~-~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~ 337 (385)
...-|+++|+. .|+..+ +.+|..+++|++++++|.++..++|.+.+...
T Consensus 9 ~~tlG~~vL~~-rG~~~~~~WyWIgvgaL~G~~vlFNil~~laL~yL~p~~ 58 (65)
T PF08370_consen 9 NSTLGVAVLKS-RGLFTESYWYWIGVGALLGFIVLFNILFTLALTYLNPLG 58 (65)
T ss_pred CCcHHHHHHHH-cCCCCCCcEEeehHHHHHHHHHHHHHHHHHHHHhcCCcC
Confidence 46789999999 899765 46999999999999999999999999987654
No 32
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.94 E-value=0.087 Score=61.64 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=93.2
Q ss_pred hhhhhhHHhhhHHHHHH--hhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHH
Q 016645 130 IGGFPSFVEDMKVFQRE--RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVV 207 (385)
Q Consensus 130 ~~~~~~~~~e~~v~~rE--~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~ 207 (385)
...+-..+.||..=.|| +--|+ +.+.|++|.++..+...++.+++.+++.. .+--.....+...++.+++..+..
T Consensus 668 ~~lv~~iV~EKE~rlKE~MkiMGL-~~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~s~~~~lfl~~~~y~~s~ 744 (2272)
T TIGR01257 668 SMTVKSIVLEKELRLKETLKNQGV-SNAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHYSDPFILFLFLLAFSTAT 744 (2272)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeecCChHHHHHHHHHHHHHH
Confidence 33456678888888888 44555 88999999999998777776655544432 221122334556666777777788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhcccc-CCCCCCccccccccccccHHHHHHHHHHHHh
Q 016645 208 ESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFR-LPNDIPKPVWRYPMSYLSFHYWALQGQYQND 274 (385)
Q Consensus 208 ~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~-~~~~lp~~~w~~~l~~isp~~y~~~al~~ne 274 (385)
..++.+++.++.+...|..+++++...+.+.-.++. -.+.++.. ..+.++-+||...++..-....
T Consensus 745 I~~~fliS~fFska~~A~~~~~li~f~~~lp~~~~~~~~~~~~~~-~~~~~sL~sp~af~~g~~~i~~ 811 (2272)
T TIGR01257 745 IMQCFLLSTFFSKASLAAACSGVIYFTLYLPHILCFAWQDRMTAD-LKTAVSLLSPVAFGFGTEYLVR 811 (2272)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhcccccCHH-HHHHHHhcCHHHHHHHHHHHHH
Confidence 899999999999999999999988766554332211 12344432 2233677788777765544433
No 33
>COG2386 CcmB ABC-type transport system involved in cytochrome c biogenesis, permease component [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.098 Score=45.73 Aligned_cols=144 Identities=14% Similarity=0.159 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhh-hHHHHHHHHHHHHhhhhhhhHHhhhH
Q 016645 63 MQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARG-SCASFVFGFVTFMSIGGFPSFVEDMK 141 (385)
Q Consensus 63 ~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~~e~~ 141 (385)
..++.+.+|+.|.-+|.+.....-+......-.+++. .+|.+.+-..... |++.....+.... +. | .
T Consensus 2 ~~~~~l~~rdLrl~~R~~~~~~~~l~F~l~Vi~lfp~---~vGpd~~~la~iaPgilWia~lLA~lL---~l-----~-r 69 (221)
T COG2386 2 MAFLALFKRDLRLEFRAKAGILNPLLFFLLVITLFPL---AVGPDPQLLARIAPGILWIAALLASLL---GL-----E-R 69 (221)
T ss_pred hhHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcc---ccCCchhHHHHhcchHHHHHHHHHHHH---hH-----H-H
Confidence 3567899999999999988776655555554444443 3455433333322 3444433332222 22 2 2
Q ss_pred HHHHHhhCCCC--------chHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 016645 142 VFQRERLNGHY--------GVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMA 213 (385)
Q Consensus 142 v~~rE~~~g~Y--------~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~ 213 (385)
.|++|+.+|.- ....-+.+|++++.....+.-++.+-+++.+.+.+. ..+....+++.+.......+|..
T Consensus 70 lF~~d~edGsLE~l~l~p~pl~~~vl~Kv~ahw~~t~lplvl~sPl~~lll~~~~--~~~~~~~ltLllGtp~ls~~ga~ 147 (221)
T COG2386 70 LFRDDYEDGSLEQLMLSPLPLAAVVLGKVLAHWLLTGLPLVLASPLLALLLNMDV--GALGALALTLLLGTPALSFLGAV 147 (221)
T ss_pred HHHHhhhcCcHHHHHcCCCcHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCCH--hHHHHHHHHHHhcchHHHHHHHH
Confidence 78899999873 566788999999988888888888888888888764 55666777777777666666666
Q ss_pred HHHhcCC
Q 016645 214 IASIVPN 220 (385)
Q Consensus 214 i~~~~~~ 220 (385)
.+++.-+
T Consensus 148 gaALtv~ 154 (221)
T COG2386 148 GAALTVG 154 (221)
T ss_pred HHHHHhc
Confidence 6665433
No 34
>PF12730 ABC2_membrane_4: ABC-2 family transporter protein
Probab=96.55 E-value=0.39 Score=42.16 Aligned_cols=89 Identities=17% Similarity=0.275 Sum_probs=49.2
Q ss_pred HHHHHhhCCC--------CchHHHHHHHHHHHhhHHHHHHHHHhhhh---hhcccc-ccchhH----HHHHHHHHHHHHH
Q 016645 142 VFQRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTIC---YFMVRL-HPGFIH----YLFFVLCLYASVA 205 (385)
Q Consensus 142 v~~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~---y~~~g~-~~~~~~----f~~~~l~l~l~~~ 205 (385)
.+.+|+++|. .+...++.+|.++.....++..++...+. ..+.+. +.+... ...+.+..++...
T Consensus 69 ~~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (232)
T PF12730_consen 69 LFSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSL 148 (232)
T ss_pred HHHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHH
Confidence 3445555554 37889999999998776666555533332 223332 222222 2233334444444
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH
Q 016645 206 VVESLMMAIASIVPNFLMGIITGAGI 231 (385)
Q Consensus 206 ~~~~lg~~i~~~~~~~~~a~~~~~~~ 231 (385)
....+ .+++...+|...+..++-+.
T Consensus 149 ~~~~~-~~i~~~~~~~~~~i~~~~~~ 173 (232)
T PF12730_consen 149 FISLL-LFISSLFRNSIVAIIISILL 173 (232)
T ss_pred HHHHH-HHHHHHHhhHHHHHHHHHHH
Confidence 44445 77888888866665544443
No 35
>COG1511 Predicted membrane protein [Function unknown]
Probab=96.44 E-value=0.07 Score=57.15 Aligned_cols=148 Identities=13% Similarity=0.070 Sum_probs=106.1
Q ss_pred hhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHH
Q 016645 147 RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGII 226 (385)
Q Consensus 147 ~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~ 226 (385)
...+.+....|++++.+..+....++..+-....+++.|.... .-+.+++..+.+.+++..+-..+..++- ..+..
T Consensus 610 ~~~~~~~~~~~~~~~~~~~i~~~~~q~~i~~~~~~~~l~~~~~--~~~~~~~~~i~~s~~f~~ii~~lv~~~g--~~g~~ 685 (780)
T COG1511 610 LSDGILNGRVYFFGKNLVFITLGLIQSLIVTLGLVLLLGVEVK--SPLLLVLFAIFSSVAFMIIIYLLVSLFG--NPGKF 685 (780)
T ss_pred ccccccchHHHHHHhhhHHHHHHHHHHHHHHhcCeEEEEeccC--chhHHHHHHHHHHHHHHHHHHHHHHHhC--cchHH
Confidence 6777889999999999999999999998887777777776543 3334444444555555555555555555 45666
Q ss_pred HHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCccccc
Q 016645 227 TGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRR 306 (385)
Q Consensus 227 ~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~~~~~ 306 (385)
++.++++.++..+|-..|....|. +++. ++..-|++|++.++...- .|... .
T Consensus 686 i~ivllvlq~~~~~G~~pi~~~~~-~~~~-l~~~lp~ty~v~~~r~~~-------------------------~~~~~-~ 737 (780)
T COG1511 686 IAIVLLVLQIAGSGGTFPIQLSPS-FFQI-LHPALPLTYAVNGFREVI-------------------------GGPIP-S 737 (780)
T ss_pred HHHHHHHHHHhccccccchhccHH-HHHH-HHHhccHHHHHHHhHHhh-------------------------ccCch-H
Confidence 777788888889999999999998 4554 999999999977653311 11111 2
Q ss_pred chhhhHHHHHHHHHHHHHHH
Q 016645 307 SKWIDLSVIFSMIISYRIIF 326 (385)
Q Consensus 307 ~~w~~~~iL~~~~i~~~~l~ 326 (385)
..|.+++++.++.++|++..
T Consensus 738 ~~~~~~~~~~~~~i~~~~~~ 757 (780)
T COG1511 738 NLWSGLLALIGFLILFIIGG 757 (780)
T ss_pred HHhhhHHHHHHHHHHHHHHH
Confidence 47888888888888887733
No 36
>PF06182 ABC2_membrane_6: ABC-2 family transporter protein; InterPro: IPR010390 This family consists of a number of hypothetical bacterial proteins of unknown function.
Probab=95.99 E-value=1.1 Score=40.46 Aligned_cols=152 Identities=11% Similarity=0.061 Sum_probs=90.9
Q ss_pred CchHHHHHHHHHHH-hhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 016645 152 YGVTAFVIGNTLSA-MPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAG 230 (385)
Q Consensus 152 Y~~~~y~~a~~l~~-~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~ 230 (385)
++...+.+.+-+.. ....++.+++..+......+.+.+..+++.+.+.+.+......++.+++++++=-......+.
T Consensus 71 v~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~i~~~~~~~~~~~~~l~~g~li~~~i~~~~~~laFw~~~~~~~~-- 148 (229)
T PF06182_consen 71 VNYLFYLLFRNLGPSSLGFLIVGIILLIYALIQLGIPWSPLNILLFILSLLLGFLINFSIFFIIGLLAFWFTESWGLS-- 148 (229)
T ss_pred CCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH--
Confidence 35556666655543 222233333333333334567777788888888888888888888888887743222222222
Q ss_pred HHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHhhhhCcccccchhh
Q 016645 231 IQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLENVFQIDVRRSKWI 310 (385)
Q Consensus 231 ~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~g~~~~~~~w~ 310 (385)
.....+++|...|.+-.|+ ..+..+.++-|+.|....=.. ++- |-. +.+.
T Consensus 149 -~i~~~l~sg~~~Pl~~fp~-~~~~il~~~lPf~~i~~~P~~----------------------~ll---g~~---~~~~ 198 (229)
T PF06182_consen 149 -YIFYSLLSGAIYPLSIFPG-WIQFILTFILPFAYISYVPAR----------------------ILL---GKI---SPLF 198 (229)
T ss_pred -HHHHHHHHHHHccHHHhHH-HHHHHHHHHhhHHHHHHHHHH----------------------HHc---CCC---cHHH
Confidence 3334459999999999998 344445666888887554322 111 111 1344
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Q 016645 311 DLSVIFSMIISYRIIFFVMIKISED 335 (385)
Q Consensus 311 ~~~iL~~~~i~~~~l~~~~L~~~~~ 335 (385)
.++...++++++.+++.+..|+-.|
T Consensus 199 ~~~~q~~~~~v~~~l~~~~w~~glr 223 (229)
T PF06182_consen 199 ILLIQAIWILVLFLLSRLLWRKGLR 223 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555567777777777776665443
No 37
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=94.93 E-value=4.1 Score=39.85 Aligned_cols=211 Identities=12% Similarity=0.098 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccccCCC---chhhhhh------hhHH---HHHHHHHHHHhhhhhh-------hHHhhhHH
Q 016645 82 YYWLRLVIYVVVTICIGTIYLNVGTG---YNSILAR------GSCA---SFVFGFVTFMSIGGFP-------SFVEDMKV 142 (385)
Q Consensus 82 ~~~~~~~~~i~~~l~~G~if~~~~~~---~~~i~~~------~~~l---~~~~~~~~~~~~~~~~-------~~~~e~~v 142 (385)
.++.=.+-..++++++|.+|.++++. ...+.+. .+.. |+...+...+.+.+++ ..-+||+-
T Consensus 299 ~lI~W~v~~fllglvygs~fg~l~~fL~~n~avrqave~~e~ag~le~~Flv~lfsIisil~a~~~V~~vlkl~geEr~n 378 (536)
T COG3559 299 SLILWTVGLFLLGLVYGSVFGGLGDFLGDNTAVRQAVERMEGAGALEQAFLVLLFSIISILAAAFAVSLVLKLHGEERGN 378 (536)
T ss_pred ccHHHHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcc
Confidence 33344555678899999999877542 1111111 0111 2222222221111111 22345544
Q ss_pred HHHHhhCCCCchHHHHHHHHHHHhh---HHHHHHHHHhhhhhhccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016645 143 FQRERLNGHYGVTAFVIGNTLSAMP---FLIMITFISGTICYFMVRLHPG--FIHYLFFVLCLYASVAVVESLMMAIASI 217 (385)
Q Consensus 143 ~~rE~~~g~Y~~~~y~~a~~l~~~p---~~~i~~~i~~~i~y~~~g~~~~--~~~f~~~~l~l~l~~~~~~~lg~~i~~~ 217 (385)
-...-.++..+....+.+.....+. .+.+.+++-..+.|.|.+-..+ ......--+.....++...++...+.-+
T Consensus 379 r~eal~a~~vsR~~vl~syl~~all~~~l~tllAl~ga~L~~~~~~~~v~~s~~~~v~sgl~~lvav~f~l~ia~ll~GL 458 (536)
T COG3559 379 RAEALLAGAVSRTHVLASYLAMALLGSALATLLALVGAGLAYGMTVGDVGGSLPTVVGSGLVQLVAVWFLLAIAVLLFGL 458 (536)
T ss_pred hHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCccHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 3333333334544444444443332 3333444445556665432211 1122222222333333344455555555
Q ss_pred cCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCccHHHHHh
Q 016645 218 VPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKIPGEYVLE 297 (385)
Q Consensus 218 ~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 297 (385)
+|-..--.-.--++..++..++| +-++|+ | +-.+||+.|.-+
T Consensus 459 aPr~t~laWlyl~~~~fvtyLg~----Llslpe--w---l~nlSp~~hip~----------------------------- 500 (536)
T COG3559 459 APRFTPLAWLYLIVGFFVTYLGG----LLSLPE--W---LLNLSPFAHIPR----------------------------- 500 (536)
T ss_pred chhhhhhHHHHHHHHHHHHHHHH----hcccHH--H---HhcCCccccCcc-----------------------------
Confidence 66443322222223333344455 234666 4 667777766311
Q ss_pred hhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Q 016645 298 NVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISE 334 (385)
Q Consensus 298 ~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~ 334 (385)
.+.++. +.| .+..++++.+....+++...|+|+
T Consensus 501 --lpved~-n~~-pll~l~ii~vaL~~lGf~~yrRRd 533 (536)
T COG3559 501 --LPVEDF-NAV-PLLWLLIIDVALITLGFMAYRRRD 533 (536)
T ss_pred --CCcccc-chH-HHHHHHHHHHHHHHhhHHHHhhhc
Confidence 122211 233 566777777777888887776654
No 38
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=94.28 E-value=0.71 Score=54.43 Aligned_cols=95 Identities=9% Similarity=-0.055 Sum_probs=69.9
Q ss_pred hhHHhhhHHHHH--HhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhcc--ccccchhHHHHHHHHHHHHHHHHHH
Q 016645 134 PSFVEDMKVFQR--ERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMV--RLHPGFIHYLFFVLCLYASVAVVES 209 (385)
Q Consensus 134 ~~~~~e~~v~~r--E~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~--g~~~~~~~f~~~~l~l~l~~~~~~~ 209 (385)
...+.||..=.| ...+|. ++.+|+++..+.++...++..+++.++.+..- ++. +...+...++++++..+++.-
T Consensus 1699 ~~~V~ER~skaK~lQ~vSGv-~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~-~~~~l~~~~lll~lyG~a~ip 1776 (2272)
T TIGR01257 1699 LYLIQERVNKAKHLQFISGV-SPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYT-SPENLPALVALLMLYGWAVIP 1776 (2272)
T ss_pred eeeehHHhhhHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhc-CcchHHHHHHHHHHHHHHHHH
Confidence 344667766544 577888 99999999999999888777777665554332 222 334566667778888899999
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 016645 210 LMMAIASIVPNFLMGIITGAG 230 (385)
Q Consensus 210 lg~~i~~~~~~~~~a~~~~~~ 230 (385)
+.++++.++.+...|.....+
T Consensus 1777 ~tYl~SflF~~~~~A~~~~~~ 1797 (2272)
T TIGR01257 1777 MMYPASFLFDVPSTAYVALSC 1797 (2272)
T ss_pred HHHHHHHhhCCchhHHHHHHH
Confidence 999999999999888765443
No 39
>COG4200 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.10 E-value=6.2 Score=35.29 Aligned_cols=146 Identities=10% Similarity=0.108 Sum_probs=83.9
Q ss_pred HHHhhCCC--------CchHHHHHHHHHHHhhHHHHHHHHHhhhhhhc---cccccchhH--HHHHHHHHHHHHHHHHHH
Q 016645 144 QRERLNGH--------YGVTAFVIGNTLSAMPFLIMITFISGTICYFM---VRLHPGFIH--YLFFVLCLYASVAVVESL 210 (385)
Q Consensus 144 ~rE~~~g~--------Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~---~g~~~~~~~--f~~~~l~l~l~~~~~~~l 210 (385)
.-|+++|. ++..-.++||+..-+....+..++....++.. .|...+... ++.....-++.+....++
T Consensus 76 ~~Ehk~n~W~~ll~lPv~r~~~YlsK~~~vf~L~~l~~li~~~~i~~~gv~~g~~~s~~~~~~~~~~~~gll~alpl~~l 155 (239)
T COG4200 76 SVEHKSNMWKHLLLLPVARWKVYLSKVFWVFILVALTSLILFISIWTVGVLYGGVKSFELAAAFTLLILGLLLALPLVAL 155 (239)
T ss_pred HHHhcCCCchhhheeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 55777666 46778899999998887777766665554432 344433322 222233333344444456
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHHHHhhCCCcccCCCCCCCCc
Q 016645 211 MMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQYQNDLKGLWFDNQSPDLPKI 290 (385)
Q Consensus 211 g~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~ 290 (385)
=...+--++|...|..++... |..+. ...+++|. | +.|-+|..-.++. .
T Consensus 156 Q~wLsm~fknf~~al~igI~l--~a~fv----a~~~s~~~--~---~PW~~pi~~~~~~----~---------------- 204 (239)
T COG4200 156 QFWLSMRFKNFAVALVIGIFL--PALFV----ASAESLPV--W---LPWASPILPMFSG----S---------------- 204 (239)
T ss_pred HHHHHHHHHhhhHhHHHHHhH--HHHHH----HhccccCc--c---ccchhhhhhhhcc----c----------------
Confidence 666677778887777766655 33322 23344665 4 5555665511111 0
Q ss_pred cHHHHHhhhhCcccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016645 291 PGEYVLENVFQIDVRRSKWIDLSVIFSMIISYRIIFFVMIKISED 335 (385)
Q Consensus 291 ~g~~~L~~~~g~~~~~~~w~~~~iL~~~~i~~~~l~~~~L~~~~~ 335 (385)
.+ .-.++.++.+..+++.+.+++.+++++.
T Consensus 205 ---------l~------v~~~i~~~~v~~ll~~l~s~l~~~r~~v 234 (239)
T COG4200 205 ---------LS------VETGILFLGVLALLFLLSSFLFFKRKKV 234 (239)
T ss_pred ---------cc------cchhHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 11 1234667777778888888887776654
No 40
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=91.92 E-value=8.1 Score=38.19 Aligned_cols=78 Identities=13% Similarity=0.019 Sum_probs=52.7
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHHhhhhh---------hcc--ccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHhcC
Q 016645 152 YGVTAFVIGNTLSAMPFLIMITFISGTICY---------FMV--RLHPGFIHYLFFVLCLYASVAV-VESLMMAIASIVP 219 (385)
Q Consensus 152 Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y---------~~~--g~~~~~~~f~~~~l~l~l~~~~-~~~lg~~i~~~~~ 219 (385)
-++..++.+|++.-..+.+++..+.....+ ... ++......+..+.+.+++..+. ..+++.++++.+.
T Consensus 227 vSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~l~~~~l~a~l~~~a~ 306 (407)
T COG1668 227 VSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFALSLFLLGLLLYAALAAFLGAMAG 306 (407)
T ss_pred cChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 489999999999999888888666655552 111 1222233344444444444444 4458999999999
Q ss_pred ChHHHHHHHH
Q 016645 220 NFLMGIITGA 229 (385)
Q Consensus 220 ~~~~a~~~~~ 229 (385)
+...|+....
T Consensus 307 ~~k~aq~~~~ 316 (407)
T COG1668 307 SIKEAQTLIS 316 (407)
T ss_pred CHHHHHHHhh
Confidence 9999988777
No 41
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=87.25 E-value=23 Score=32.20 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=55.6
Q ss_pred CchHHHHHHHHHHHhhHHHHHHHHHhhhhhh---ccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 016645 152 YGVTAFVIGNTLSAMPFLIMITFISGTICYF---MVRLH-PGFIHYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIIT 227 (385)
Q Consensus 152 Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~---~~g~~-~~~~~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~ 227 (385)
.+....++||++.-....++..+++.+..+. +.|.. .+...++...+..++..+....+-++++.-. +..+
T Consensus 80 vs~~~~~~aK~l~~~~~~~~s~~i~~i~~~~~g~l~~~~~~~~~~~~~~~l~~~i~sl~~i~l~l~ls~~~-----g~~~ 154 (241)
T TIGR03732 80 VDLKKVWIAKILVIAIYLLISCIILFIGLVLIGFVIPPSNISIGQALLASLLIWLTSLWQIPLCLFLARKF-----GMFV 154 (241)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Confidence 4678899999998776665555554422221 22311 1223344445555555555566666665443 2222
Q ss_pred HHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHHHH
Q 016645 228 GAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQGQY 271 (385)
Q Consensus 228 ~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~al~ 271 (385)
+.++.....++.|.+...+ + .| ++.|..|..+.+.
T Consensus 155 si~ig~~~~li~g~~~~~~---~-~w-----~~~P~s~~~rl~~ 189 (241)
T TIGR03732 155 SILVNLVLGLIFGIVLATK---S-FW-----WLFPYSWPSRLMC 189 (241)
T ss_pred HHHHHHHHHHHHHHHHHcc---C-Ce-----EEechHHHHHHHh
Confidence 2222222233345543222 2 34 4678999988885
No 42
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=81.43 E-value=24 Score=38.76 Aligned_cols=101 Identities=10% Similarity=0.024 Sum_probs=72.7
Q ss_pred hhhHHhhhHHHHH--HhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHHHHHH
Q 016645 133 FPSFVEDMKVFQR--ERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAVVESL 210 (385)
Q Consensus 133 ~~~~~~e~~v~~r--E~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~~~~l 210 (385)
....+.||..-.| +...|+ ++.+|+++..+.+.+..++..++...+++.+ | ......+....+..++.......+
T Consensus 316 ~~~li~e~~~~~~~~~~i~G~-~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f-~-~~~~~~~~~~~~~~~l~~~s~i~l 392 (885)
T KOG0059|consen 316 LLSLILERQQRLRHQQLIAGL-SPSTYWLFALVWDLLLYLLILLILLIFVLIF-G-FFAGNNTVIILLLLLLYIRSAIPL 392 (885)
T ss_pred HhHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhee-e-cccccchHHHHHHHHHHHHHHHHH
Confidence 3445666666555 477777 9999999999999988887777666665543 3 223445666667777777878899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHHHH
Q 016645 211 MMAIASIVPNFLMGIITGAGIQGIFM 236 (385)
Q Consensus 211 g~~i~~~~~~~~~a~~~~~~~~~~~~ 236 (385)
..+.+.+++....+..+..++.....
T Consensus 393 ~y~~s~~f~~~~~~~v~~~i~~~~s~ 418 (885)
T KOG0059|consen 393 TYILSFIFSKESTASVILSIYNLISG 418 (885)
T ss_pred HHHHHHHhcCCcCceeehhhHHHHHH
Confidence 99999999888888777665544443
No 43
>PF09847 DUF2074: Predicted permease (DUF2074); InterPro: IPR018646 This family has no known function.
Probab=78.33 E-value=78 Score=31.76 Aligned_cols=121 Identities=12% Similarity=0.043 Sum_probs=69.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhccccCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhH
Q 016645 57 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTGYNSILARGSCASFVFGFVTFMSIGGFPSF 136 (385)
Q Consensus 57 ~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~ 136 (385)
++.+...-...+++.+++...|+++... -++.++.+++..-....+.+ +... ...+........+++......
T Consensus 242 ~~~k~~~~~~al~~KDlK~~~R~sq~l~-~~L~Pl~~~i~~i~~~~~~~---~~~~---~~~~~i~~~~~~ss~~~~~~l 314 (449)
T PF09847_consen 242 FKIKIRSPLLALFKKDLKILFRKSQLLF-GFLYPLVFVIPFIFMILSSG---DPLS---LTIFYIIIIGVYSSMMSDALL 314 (449)
T ss_pred eccccCcchHHHHHHHHHHHHcchhHHH-HHHHHHHHHHHHHHHHhhcC---chhH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4445555677899999999999987765 56666655554322221112 1111 223333333344445555556
Q ss_pred HhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccc
Q 016645 137 VEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVR 185 (385)
Q Consensus 137 ~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g 185 (385)
..|++.+.=-+.-.. +...++.+|.+..........++..++.....|
T Consensus 315 ~~E~~~~~~l~sLPi-~~~~~v~sKil~~~~i~~~l~~~i~i~~~~~~~ 362 (449)
T PF09847_consen 315 KIEGEGFEFLRSLPI-KKREFVRSKILIPSIIPSALSLIIVIVSSIYNG 362 (449)
T ss_pred HHhhhcchhHhhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 667777655555544 888899999998764444334434444444443
No 44
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=66.53 E-value=6.4 Score=32.10 Aligned_cols=29 Identities=14% Similarity=0.496 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016645 308 KWIDLSVIFSMIISYRIIFFVMIKISEDV 336 (385)
Q Consensus 308 ~w~~~~iL~~~~i~~~~l~~~~L~~~~~~ 336 (385)
+|.-+++++++++++++++++.-|+++|+
T Consensus 1 RW~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred CeeeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36666666666666666666555555554
No 45
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=58.76 E-value=1.8e+02 Score=28.10 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhcc
Q 016645 57 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYL 102 (385)
Q Consensus 57 ~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~ 102 (385)
++..-....+.+++|.+++...||.+--.-+..+ .+.+++..++.
T Consensus 133 kQs~~iEsTYyll~~YlKk~l~Dp~~~~~~lGvP-G~~lLiy~i~~ 177 (344)
T PF04123_consen 133 KQSRGIESTYYLLGRYLKKALSDPEYRRTFLGVP-GLILLIYAILA 177 (344)
T ss_pred EcCCCcHHHHHHHHHHHHHhhcChhhhceeecch-HHHHHHHHHHH
Confidence 4556688899999999999999999987777666 55555554443
No 46
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=56.76 E-value=18 Score=22.57 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhc
Q 016645 81 GYYWLRLVIYVVVTICIGTIY 101 (385)
Q Consensus 81 ~~~~~~~~~~i~~~l~~G~if 101 (385)
+..+..+..++++++++|++|
T Consensus 4 Sl~fa~iMVPVvma~ilglIy 24 (41)
T PF10766_consen 4 SLAFAVIMVPVVMALILGLIY 24 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999998
No 47
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=52.80 E-value=17 Score=30.75 Aligned_cols=33 Identities=3% Similarity=-0.068 Sum_probs=24.5
Q ss_pred HHHHHhhhChhHHH---HHHHHHHHHHHHHHhhccc
Q 016645 71 RSFVNMSRDFGYYW---LRLVIYVVVTICIGTIYLN 103 (385)
Q Consensus 71 R~~~~~~Rd~~~~~---~~~~~~i~~~l~~G~if~~ 103 (385)
|.++.++|||..+. .-++.++++++++|..|++
T Consensus 1 ~E~~~~~r~~~~~~~li~~~~~P~i~~~~~~~a~~~ 36 (164)
T TIGR03061 1 SELKRLRKNKLLRIALIAIMLIPLLYGGLFLWAFWD 36 (164)
T ss_pred ChHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 57889999996543 4467788888888887753
No 48
>COG4325 Predicted membrane protein [Function unknown]
Probab=51.17 E-value=1.7e+02 Score=28.59 Aligned_cols=70 Identities=13% Similarity=-0.022 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhhhhccccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHh
Q 016645 169 LIMITFISGTICYFMVRLHPGF-IHYLFFVLCLYASVAVVESLMMAIASIV---PNFLMGIITGAGIQGIFMLV 238 (385)
Q Consensus 169 ~~i~~~i~~~i~y~~~g~~~~~-~~f~~~~l~l~l~~~~~~~lg~~i~~~~---~~~~~a~~~~~~~~~~~~l~ 238 (385)
.++++++|++.+--.+|-..+. +.|.-+..+.....+...++|.+|..+. -+...++.+..+-.-.+.+.
T Consensus 132 ~FlctFvysl~vlrtvg~e~d~~g~FIp~~avtv~lLlaiisig~~iyfl~~l~~siq~~n~i~kv~~~t~~l~ 205 (464)
T COG4325 132 IFLCTFVYSLGVLRTVGEERDGQGAFIPKVAVTVSLLLAIISIGALIYFLHHLMHSIQIDNIIDKVRLRTLGLV 205 (464)
T ss_pred HHHHHHHHHHHHHHHhhhccCccccceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666665555554444 5677777777777777778888776552 23344444444433333333
No 49
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=50.42 E-value=1.9e+02 Score=25.98 Aligned_cols=47 Identities=11% Similarity=-0.049 Sum_probs=30.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhcc
Q 016645 56 GSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYL 102 (385)
Q Consensus 56 ~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~ 102 (385)
....++++|++..++=.-+..-+=+.+...-++..+++++++|+++.
T Consensus 4 ~k~~~~~~Qi~q~y~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~ 50 (224)
T PF13829_consen 4 PKKPGRRKQIWQAYKMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFG 50 (224)
T ss_pred cccchHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34567778877766655554333344555666777778888888763
No 50
>COG3559 TnrB3 Putative exporter of polyketide antibiotics [Cell envelope biogenesis, outer membrane]
Probab=43.61 E-value=3.5e+02 Score=27.03 Aligned_cols=70 Identities=23% Similarity=0.260 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCCccccccccccccHHHHHHHH
Q 016645 192 HYLFFVLCLYASVAVVESLMMAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIPKPVWRYPMSYLSFHYWALQG 269 (385)
Q Consensus 192 ~f~~~~l~l~l~~~~~~~lg~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp~~~w~~~l~~isp~~y~~~a 269 (385)
.-+.|-.++....+....+..+++.++++.......+-..+....+. +-..+... - -++|+||+-|.+..
T Consensus 164 gs~afgvtl~~tg~~~~avaalf~qL~~~a~~t~g~~f~llG~aflv----Rmi~Dvss--~--~L~WfsPlgW~~~~ 233 (536)
T COG3559 164 GSVAFGVTLAATGMVFTAVAALFAQLSPSARFTRGVAFALLGTAFLV----RMIGDVSS--G--TLSWFSPLGWSLQV 233 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCccccccchhHHHHHHHHHHH----HHHhcccc--c--ccccccCccceEEe
Confidence 44566777777777777888888888776554443333322222211 11122222 1 18899999997553
No 51
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.37 E-value=43 Score=27.02 Aligned_cols=28 Identities=14% Similarity=0.158 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016645 308 KWIDLSVIFSMIISYRIIFFVMIKISED 335 (385)
Q Consensus 308 ~w~~~~iL~~~~i~~~~l~~~~L~~~~~ 335 (385)
.+..+++++|++..-.+++|++.|++++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5666666666666665666655444443
No 52
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=42.40 E-value=64 Score=30.59 Aligned_cols=44 Identities=9% Similarity=-0.000 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhh
Q 016645 57 SQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTI 100 (385)
Q Consensus 57 ~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~i 100 (385)
+..+|.+|-...+++.+++++|||...+..++...+.-+++|..
T Consensus 5 ~~~~~~~~h~~~~~~~~~~l~rn~~~s~~si~~i~i~L~l~g~~ 48 (309)
T PRK11026 5 FTNGFNEQVRYAWRGALADLKRKPLATLLTVMVIAISLTLPSVC 48 (309)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999998877666555444444543
No 53
>PF10011 DUF2254: Predicted membrane protein (DUF2254); InterPro: IPR018723 Members of this family of proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.
Probab=39.66 E-value=3.7e+02 Score=26.17 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=40.9
Q ss_pred HhhhHHHHHHhhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccc--hhHHHHHHHHHHHHHHHHHHHHHHH
Q 016645 137 VEDMKVFQRERLNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPG--FIHYLFFVLCLYASVAVVESLMMAI 214 (385)
Q Consensus 137 ~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~--~~~f~~~~l~l~l~~~~~~~lg~~i 214 (385)
++-...|.|++.+.. .++- ++.+++|++++-...+-... ...+. +.+.+.+...+...+-.+|
T Consensus 82 PR~l~~f~~d~~~q~------vLg~--------Figtfvy~l~~l~~i~~~~~~~~p~~~-~~~a~~l~i~~v~~li~fI 146 (371)
T PF10011_consen 82 PRLLRNFMRDRVTQV------VLGT--------FIGTFVYSLLVLIAIRSGDYGSVPRLS-VFIALALAILSVVLLIYFI 146 (371)
T ss_pred hHHHHHHHhCchHHH------HHHH--------HHHHHHHHHHHHHHccccccccCcchH-HHHHHHHHHHHHHHHHHHH
Confidence 455566666655443 3332 34455555555544433222 22333 5555555555555666666
Q ss_pred HHhcCChHHHHHHHHHH
Q 016645 215 ASIVPNFLMGIITGAGI 231 (385)
Q Consensus 215 ~~~~~~~~~a~~~~~~~ 231 (385)
-.++.+-.....+..+-
T Consensus 147 ~~i~~~iqv~~ii~~i~ 163 (371)
T PF10011_consen 147 HHIARSIQVSNIIARIE 163 (371)
T ss_pred HHHHHhcCHHHHHHHHH
Confidence 66666555555555443
No 54
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=38.78 E-value=61 Score=30.70 Aligned_cols=44 Identities=11% Similarity=-0.077 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHh
Q 016645 56 GSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGT 99 (385)
Q Consensus 56 ~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~ 99 (385)
+|..-|..|-+...++.+++++|||...+..++...+.-+++|.
T Consensus 4 ~~~~~~~~~h~~~~~~~~~~l~r~~~~s~~si~ti~i~L~l~g~ 47 (309)
T TIGR00439 4 HYASVFSLQVEYARSALKQDLRQQPFGTLLTLIVIAVSLTLPLV 47 (309)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 46667889999999999999999999887655554444444443
No 55
>PLN03211 ABC transporter G-25; Provisional
Probab=38.39 E-value=5.1e+02 Score=27.45 Aligned_cols=15 Identities=13% Similarity=-0.088 Sum_probs=12.0
Q ss_pred ccCCCCCCcccccch
Q 016645 3 LKFETSDDPLEKITT 17 (385)
Q Consensus 3 ~~~~np~d~~~~~~~ 17 (385)
+...|||||++++.+
T Consensus 306 P~~~NpADf~ldv~~ 320 (659)
T PLN03211 306 SFPMNPADFLLDLAN 320 (659)
T ss_pred CCCCCHHHHHHHHcC
Confidence 567899999997654
No 56
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=36.01 E-value=25 Score=28.55 Aligned_cols=27 Identities=7% Similarity=0.154 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCcc
Q 016645 313 SVIFSMIISYRIIFFVMIKISEDVTPW 339 (385)
Q Consensus 313 ~iL~~~~i~~~~l~~~~L~~~~~~~~~ 339 (385)
+++++++++++++.++++...+|++++
T Consensus 3 ~l~~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455566666666666667777776665
No 57
>PRK14750 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=35.70 E-value=89 Score=18.13 Aligned_cols=25 Identities=4% Similarity=0.299 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc
Q 016645 311 DLSVIFSMIISYRIIFFVMIKISED 335 (385)
Q Consensus 311 ~~~iL~~~~i~~~~l~~~~L~~~~~ 335 (385)
++.++.+..+++.++.|++....+.
T Consensus 2 s~~vi~g~llv~lLl~YLvYAL~na 26 (29)
T PRK14750 2 NFSIVCGALLVLLLLGYLVYALFNA 26 (29)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 5677888888888888887765543
No 58
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=34.97 E-value=1.4e+02 Score=19.89 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=19.4
Q ss_pred HHHHHHHhhhChhHHHHHHHHHH-HHHHHHHhhccc
Q 016645 69 TKRSFVNMSRDFGYYWLRLVIYV-VVTICIGTIYLN 103 (385)
Q Consensus 69 ~~R~~~~~~Rd~~~~~~~~~~~i-~~~l~~G~if~~ 103 (385)
.++.++.+.||+.....-+++.+ ++..++|-.+..
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45666777788877664444433 333444444433
No 59
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=32.88 E-value=1.9e+02 Score=27.55 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=27.1
Q ss_pred hCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhh
Q 016645 148 LNGHYGVTAFVIGNTLSAMPFLIMITFISGTICYF 182 (385)
Q Consensus 148 ~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~ 182 (385)
.+|.|+..+-.++.+..-+||.+...+.+..+++.
T Consensus 3 s~~iYp~i~~~l~~~~g~~PFSvgdi~~~~~il~l 37 (318)
T PF12725_consen 3 SRGIYPVISKLLRRLFGWFPFSVGDILYYLLILFL 37 (318)
T ss_pred cCcchHHHHHHHHHhccCcChhHHHHHHHHHHHHH
Confidence 57889999999999999999988776665555443
No 60
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=28.59 E-value=1.2e+02 Score=22.19 Aligned_cols=9 Identities=11% Similarity=0.087 Sum_probs=4.7
Q ss_pred cccccHHHH
Q 016645 257 MSYLSFHYW 265 (385)
Q Consensus 257 l~~isp~~y 265 (385)
.+.=+|.+|
T Consensus 58 ~y~r~p~~W 66 (76)
T PF06645_consen 58 FYNRHPLKW 66 (76)
T ss_pred hhcCCcccC
Confidence 445555555
No 61
>PF13346 ABC2_membrane_5: ABC-2 family transporter protein
Probab=27.56 E-value=3.8e+02 Score=22.74 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=24.2
Q ss_pred hhCCCCchHHHHHHHHHHHhhHHHHHHHHHhhhh
Q 016645 147 RLNGHYGVTAFVIGNTLSAMPFLIMITFISGTIC 180 (385)
Q Consensus 147 ~~~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~ 180 (385)
..+=..+...++.||.+..+...++..++..++.
T Consensus 68 ~~slPvsr~~iV~akyl~~~i~~~~~~l~~~i~~ 101 (206)
T PF13346_consen 68 LNSLPVSRKEIVLAKYLFSLIIILIGSLISLIIA 101 (206)
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333468889999999998877766666655544
No 62
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=26.92 E-value=1.1e+02 Score=20.86 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 016645 316 FSMIISYRIIFFVMIKISED 335 (385)
Q Consensus 316 ~~~~i~~~~l~~~~L~~~~~ 335 (385)
+.++++..+-...+||+..+
T Consensus 9 IviVlgvIigNia~LK~sAk 28 (55)
T PF11446_consen 9 IVIVLGVIIGNIAALKYSAK 28 (55)
T ss_pred HHHHHHHHHhHHHHHHHhcc
Confidence 33334444455566777655
No 63
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=24.97 E-value=1e+02 Score=20.21 Aligned_cols=25 Identities=4% Similarity=-0.102 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Q 016645 310 IDLSVIFSMIISYRIIFFVMIKISE 334 (385)
Q Consensus 310 ~~~~iL~~~~i~~~~l~~~~L~~~~ 334 (385)
...+.++.+.++|.++.+++.+.++
T Consensus 10 ~~~~~~v~~~~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 10 ARSIGTVLFFVFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3455666777777777766665443
No 64
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=24.87 E-value=71 Score=30.13 Aligned_cols=24 Identities=8% Similarity=0.386 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccC
Q 016645 314 VIFSMIISYRIIFFVMIKISEDVT 337 (385)
Q Consensus 314 iL~~~~i~~~~l~~~~L~~~~~~~ 337 (385)
+.+..+++-.++-|++||+|++++
T Consensus 263 iaIliIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 263 IAILIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444445567778888887554
No 65
>PLN03223 Polycystin cation channel protein; Provisional
Probab=24.44 E-value=1.2e+03 Score=27.29 Aligned_cols=63 Identities=10% Similarity=0.039 Sum_probs=34.4
Q ss_pred HHHHhhhhhhhHHhhhHHHHHHhhCCCCchHHHHHHHHHHHh----hHHHHHHHHHhhhhhhccccc
Q 016645 125 VTFMSIGGFPSFVEDMKVFQRERLNGHYGVTAFVIGNTLSAM----PFLIMITFISGTICYFMVRLH 187 (385)
Q Consensus 125 ~~~~~~~~~~~~~~e~~v~~rE~~~g~Y~~~~y~~a~~l~~~----p~~~i~~~i~~~i~y~~~g~~ 187 (385)
..++.+.++..|..-.++++--+-+...+....-+.+.+.++ .+.++.-+.|+.+.+.++|-.
T Consensus 1289 q~Y~aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~ 1355 (1634)
T PLN03223 1289 QWYMTLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNA 1355 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344444455556555566655555555555555555544443 333444455566677777754
No 66
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=23.96 E-value=65 Score=26.81 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=11.6
Q ss_pred CccchhhhhhhhhccccCCCCCCCCCc
Q 016645 337 TPWIRGCLARRRMQQKNGTQNTTVAPD 363 (385)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (385)
+..+.+..-+|+-++|..+......++
T Consensus 40 ~ftLPkflqRRssk~kDytkt~~~~~~ 66 (158)
T PF11770_consen 40 RFTLPKFLQRRSSKRKDYTKTPSLSPE 66 (158)
T ss_pred ccchHHHHHhhhhhccccccCcCCCcc
Confidence 334444444444444444444434333
No 67
>KOG4112 consensus Signal peptidase subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.78 E-value=1.3e+02 Score=22.91 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=10.0
Q ss_pred CCCccccccccccccHHHHHH
Q 016645 247 DIPKPVWRYPMSYLSFHYWAL 267 (385)
Q Consensus 247 ~lp~~~w~~~l~~isp~~y~~ 267 (385)
.+|+ |- ++.=+|++|+-
T Consensus 67 ~LPp--wP--~y~rn~LkW~~ 83 (101)
T KOG4112|consen 67 TLPP--WP--WYRRNPLKWAQ 83 (101)
T ss_pred cCCC--ch--hhhcCcccccC
Confidence 4665 52 44448888863
No 68
>PHA02844 putative transmembrane protein; Provisional
Probab=23.57 E-value=1.3e+02 Score=21.78 Aligned_cols=29 Identities=10% Similarity=0.083 Sum_probs=18.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhcc
Q 016645 307 SKWIDLSVIFSMIISYRIIFFVMIKISED 335 (385)
Q Consensus 307 ~~w~~~~iL~~~~i~~~~l~~~~L~~~~~ 335 (385)
..|..+++++.++++-.++.++-||..+|
T Consensus 46 ~~~~~~ii~i~~v~~~~~~~flYLK~~~r 74 (75)
T PHA02844 46 SSTKIWILTIIFVVFATFLTFLYLKAVPR 74 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 36666776666666666666666665443
No 69
>PRK13628 serine/threonine transporter SstT; Provisional
Probab=23.49 E-value=6.4e+02 Score=24.85 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=20.0
Q ss_pred hhChhHHHHHHHHHHHHHHHHHhhcc
Q 016645 77 SRDFGYYWLRLVIYVVVTICIGTIYL 102 (385)
Q Consensus 77 ~Rd~~~~~~~~~~~i~~~l~~G~if~ 102 (385)
+|++..+..+++..+++|+++|..+.
T Consensus 10 ~~~~~~l~~~ilig~vlGi~~G~~~~ 35 (402)
T PRK13628 10 RLARGSLVKQILIGLVLGILLALLSP 35 (402)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHhhH
Confidence 44455677888999999999998763
No 70
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=23.20 E-value=4.5e+02 Score=25.64 Aligned_cols=62 Identities=8% Similarity=0.112 Sum_probs=29.9
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhhhccccc--cchhHH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016645 158 VIGNTLSAMPFLIMITFISGTICYFMVRLH--PGFIHY-LFFVLCLYASVAVVESLMMAIASIVP 219 (385)
Q Consensus 158 ~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~--~~~~~f-~~~~l~l~l~~~~~~~lg~~i~~~~~ 219 (385)
+.+.....+.-.++.+++|+.+..-..++. ...++. ....+...+....+..+|..++.+.+
T Consensus 30 ~~G~lfi~ll~~~v~PLVf~sii~gi~~l~~~~~~g~i~~~~i~~~~~~t~~A~~ig~~~~~~~~ 94 (390)
T PF00375_consen 30 FPGDLFIRLLKMLVLPLVFSSIISGIASLGDAKKLGRIGGRTILYFLLTTLLAAAIGLLVALLFQ 94 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHSHT-TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccccHHHHHHHHHHHHHHHHHHHHHHHheeeC
Confidence 444555555556666667777766666653 222221 11222223333444455555555543
No 71
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=23.10 E-value=1.7e+02 Score=17.03 Aligned_cols=24 Identities=8% Similarity=0.325 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q 016645 312 LSVIFSMIISYRIIFFVMIKISED 335 (385)
Q Consensus 312 ~~iL~~~~i~~~~l~~~~L~~~~~ 335 (385)
.....+..+++.+++|+.+-..+.
T Consensus 3 ~~vi~G~ilv~lLlgYLvyALi~a 26 (29)
T PRK14748 3 AGVITGVLLVFLLLGYLVYALINA 26 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc
Confidence 456778888888888887765443
No 72
>PRK11283 gltP glutamate/aspartate:proton symporter; Provisional
Probab=22.85 E-value=6.1e+02 Score=25.31 Aligned_cols=63 Identities=10% Similarity=0.090 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhhcccccc--chhHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Q 016645 156 AFVIGNTLSAMPFLIMITFISGTICYFMVRLHP--GFIHY-LFFVLCLYASVAVVESLMMAIASIV 218 (385)
Q Consensus 156 ~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~--~~~~f-~~~~l~l~l~~~~~~~lg~~i~~~~ 218 (385)
...+++....+...++.++++..++.-..++.. ..++. ..-.+..+++...+..+|+.++.+.
T Consensus 41 l~~~G~iFl~lLkm~VvPLVf~Sii~gI~~l~~~~~lg~ig~~~~~~f~~tt~ia~~igl~~~~i~ 106 (437)
T PRK11283 41 LSPAGDIFIHLIKMIVVPIVISTLIVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITLANVF 106 (437)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345677777778888888888888877776642 12221 1112222233344455666655554
No 73
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=21.80 E-value=97 Score=29.81 Aligned_cols=31 Identities=6% Similarity=0.192 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 016645 308 KWIDLSVIFSMIISYRIIFFVMIKISEDVTPW 339 (385)
Q Consensus 308 ~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~~~ 339 (385)
+-..++++++++ +-.++.|+.||+|++++..
T Consensus 312 IiaSiIAIvvIV-LIMvIIYLILRYRRKKKMk 342 (353)
T TIGR01477 312 IIASIIAILIIV-LIMVIIYLILRYRRKKKMK 342 (353)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhcchhH
Confidence 333344333333 3447788999999886543
No 74
>PTZ00046 rifin; Provisional
Probab=21.67 E-value=98 Score=29.86 Aligned_cols=31 Identities=6% Similarity=0.189 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcccCcc
Q 016645 308 KWIDLSVIFSMIISYRIIFFVMIKISEDVTPW 339 (385)
Q Consensus 308 ~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~~~ 339 (385)
+-..+++++++ ++-.++.|+.||+|++++..
T Consensus 317 IiaSiiAIvVI-VLIMvIIYLILRYRRKKKMk 347 (358)
T PTZ00046 317 IIASIVAIVVI-VLIMVIIYLILRYRRKKKMK 347 (358)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhhhcchhH
Confidence 33334333333 33457788999999887543
No 75
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=21.66 E-value=5.2e+02 Score=27.96 Aligned_cols=61 Identities=16% Similarity=0.087 Sum_probs=30.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHH----HHHHHhcCChHHHHHHHHHHHHHHHHhhccccCCCCCC
Q 016645 189 GFIHYLFFVLCLYASVAVVESLM----MAIASIVPNFLMGIITGAGIQGIFMLVSGYFRLPNDIP 249 (385)
Q Consensus 189 ~~~~f~~~~l~l~l~~~~~~~lg----~~i~~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~~~lp 249 (385)
+..+.+..++++++....+.++| ..+|.+..=...++.....++.+.-|++|.|.+...+-
T Consensus 176 sl~~il~~~~vl~~a~~gG~~~Gaa~Gv~~Gli~~l~~~~~~~~~~~~af~GLlaG~fk~~gK~g 240 (764)
T TIGR02865 176 SLENIIARLAVLLISYIGGSGAGAAGGVVIGVILGLANNANLYQIGVFGFAGLLGGIFKELGKIG 240 (764)
T ss_pred EHHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhhccCCcce
Confidence 34555554444444433333333 33333322112233444556667778899998866554
No 76
>PRK00753 psbL photosystem II reaction center L; Provisional
Probab=21.45 E-value=1.6e+02 Score=18.29 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhccc
Q 016645 81 GYYWLRLVIYVVVTICIGTIYLN 103 (385)
Q Consensus 81 ~~~~~~~~~~i~~~l~~G~if~~ 103 (385)
..++..+++..++++++..-|++
T Consensus 17 TSLy~GlLlifvl~vLFssYffN 39 (39)
T PRK00753 17 TSLYLGLLLVFVLGILFSSYFFN 39 (39)
T ss_pred hhHHHHHHHHHHHHHHHHhhccC
Confidence 34444566667777777766653
No 77
>PHA02650 hypothetical protein; Provisional
Probab=21.09 E-value=2e+02 Score=21.18 Aligned_cols=29 Identities=10% Similarity=0.062 Sum_probs=17.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016645 308 KWIDLSVIFSMIISYRIIFFVMIKISEDV 336 (385)
Q Consensus 308 ~w~~~~iL~~~~i~~~~l~~~~L~~~~~~ 336 (385)
-|..+++++.++++-.++.++-||..+|.
T Consensus 48 ~~~~~ii~i~~v~i~~l~~flYLK~~~r~ 76 (81)
T PHA02650 48 NGQNFIFLIFSLIIVALFSFFVFKGYTRN 76 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56666666666665566666666665554
No 78
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=20.32 E-value=8.9e+02 Score=24.38 Aligned_cols=95 Identities=18% Similarity=0.159 Sum_probs=45.9
Q ss_pred HHHHhh---CCCCchHHHHHHHHHHHhhHHHHHHHHHhhhhhhccccccchhHHHHHHHHHHHHHHH-HHHHHH---HHH
Q 016645 143 FQRERL---NGHYGVTAFVIGNTLSAMPFLIMITFISGTICYFMVRLHPGFIHYLFFVLCLYASVAV-VESLMM---AIA 215 (385)
Q Consensus 143 ~~rE~~---~g~Y~~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~~~~~~f~~~~l~l~l~~~~-~~~lg~---~i~ 215 (385)
|.++.- .|+..-+.|++..++....-... +..-+-||..+.+ ..---+.+.+.+...+++ .-.+|- .++
T Consensus 82 ~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tA---i~~y~~~WfP~vP-~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfA 157 (462)
T COG1113 82 YARKYLGPWAGFLTGWTYWFFWVLVGIAELTA---IGIYLQFWFPDVP-QWVFALAAVVLLLAVNLISVKVFGELEFWFA 157 (462)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544 33345666777776665544432 3344567776762 321111111222222222 222221 122
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhhccccCC
Q 016645 216 SIVPNFLMGIITGAGIQGIFMLVSGYFRLP 245 (385)
Q Consensus 216 ~~~~~~~~a~~~~~~~~~~~~l~sG~~~~~ 245 (385)
. -..+.+++-++....++++|+--+.
T Consensus 158 l----IKV~aIi~~Iv~G~~ll~~g~~~~~ 183 (462)
T COG1113 158 L----IKVAAIIAFIVVGIVLLFGGFGGGG 183 (462)
T ss_pred H----HHHHHHHHHHHHHHHHHhhccCCCC
Confidence 2 2456667777777777887766653
Done!