Query 016645
Match_columns 385
No_of_seqs 207 out of 2059
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 17:04:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_L Photosystem II reaction 17.6 1.5E+02 0.0053 17.3 3.2 23 80-102 14-36 (37)
2 2l2t_A Receptor tyrosine-prote 14.0 2.3E+02 0.0079 17.5 3.6 6 328-333 32-37 (44)
3 2nwl_A GLTPH, glutamate sympor 11.2 9.3E+02 0.032 22.5 8.9 64 156-219 43-108 (422)
4 2q67_A Potassium channel prote 10.3 3.6E+02 0.012 19.9 4.6 41 61-104 4-44 (114)
5 2l9u_A Receptor tyrosine-prote 10.2 2.9E+02 0.0099 16.0 3.4 29 308-336 6-34 (40)
6 2ks1_B Epidermal growth factor 7.8 4.1E+02 0.014 16.3 3.2 9 325-333 30-38 (44)
7 3rhw_A Avermectin-sensitive gl 7.7 1.1E+03 0.038 20.9 10.7 33 75-107 208-240 (347)
8 2zy9_A Mg2+ transporter MGTE; 6.7 1.4E+03 0.049 21.3 12.5 47 139-185 357-406 (473)
9 2k21_A Potassium voltage-gated 6.2 6.7E+02 0.023 19.3 4.3 37 309-345 53-92 (138)
10 1xl4_A Inward rectifier potass 4.9 7E+02 0.024 22.0 4.5 88 78-166 45-135 (301)
No 1
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=17.65 E-value=1.5e+02 Score=17.28 Aligned_cols=23 Identities=13% Similarity=0.392 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc
Q 016645 80 FGYYWLRLVIYVVVTICIGTIYL 102 (385)
Q Consensus 80 ~~~~~~~~~~~i~~~l~~G~if~ 102 (385)
+..++..++..+++++++..-|+
T Consensus 14 RTSLy~GLLlifvlavlFssyff 36 (37)
T 3arc_L 14 RTSLYLGLLLILVLALLFSSYFF 36 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhhhhcc
Confidence 34444555566667777666554
No 2
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=13.96 E-value=2.3e+02 Score=17.47 Aligned_cols=6 Identities=17% Similarity=0.373 Sum_probs=2.3
Q ss_pred HHHHHh
Q 016645 328 VMIKIS 333 (385)
Q Consensus 328 ~~L~~~ 333 (385)
+.+|++
T Consensus 32 ~~~RRR 37 (44)
T 2l2t_A 32 VYVRRK 37 (44)
T ss_dssp HHHHTT
T ss_pred HHhhhh
Confidence 333433
No 3
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=11.20 E-value=9.3e+02 Score=22.47 Aligned_cols=64 Identities=8% Similarity=0.124 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhhhhhccccc-cchhHH-HHHHHHHHHHHHHHHHHHHHHHHhcC
Q 016645 156 AFVIGNTLSAMPFLIMITFISGTICYFMVRLH-PGFIHY-LFFVLCLYASVAVVESLMMAIASIVP 219 (385)
Q Consensus 156 ~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~-~~~~~f-~~~~l~l~l~~~~~~~lg~~i~~~~~ 219 (385)
...+++....+.-.++.+++|+.++--..++. ...++. ..-.+..++....+..+|+.++.+.+
T Consensus 43 ~~~~G~lFi~llkmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~ 108 (422)
T 2nwl_A 43 VKPFGDLFVRLLKMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFN 108 (422)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34567777777888888999999888888774 333442 22233333444455566776666644
No 4
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=10.27 E-value=3.6e+02 Score=19.93 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHHHHHHhhcccc
Q 016645 61 FLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVTICIGTIYLNV 104 (385)
Q Consensus 61 ~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~ 104 (385)
+.-++..+.++ .+..+|++.. ...+..+++.++.|.+.+..
T Consensus 4 ~~~~~~rl~~~-~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~ 44 (114)
T 2q67_A 4 FLLTLKRMLRA-CLRAWKDKEF--QVLFVLTILTLISGTIFYST 44 (114)
T ss_dssp HHHHHHHHHHH-HHHHTTCHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhhhhH--HHHHHHHHHHHHHHHHHHHH
Confidence 44455555554 4444566654 23444455566667766543
No 5
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=10.22 E-value=2.9e+02 Score=15.98 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=20.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccc
Q 016645 308 KWIDLSVIFSMIISYRIIFFVMIKISEDV 336 (385)
Q Consensus 308 ~w~~~~iL~~~~i~~~~l~~~~L~~~~~~ 336 (385)
.-+.+-.+.+..++|.+++--.|.++.|+
T Consensus 6 l~malt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 6 LTMALTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCceeEEEcccc
Confidence 34556677888888888887777766543
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=7.83 E-value=4.1e+02 Score=16.26 Aligned_cols=9 Identities=0% Similarity=-0.097 Sum_probs=3.5
Q ss_pred HHHHHHHHh
Q 016645 325 IFFVMIKIS 333 (385)
Q Consensus 325 l~~~~L~~~ 333 (385)
+.++.+|++
T Consensus 30 ~~~~~~RRr 38 (44)
T 2ks1_B 30 GIGLFMRRR 38 (44)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhhh
Confidence 333344443
No 7
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=7.73 E-value=1.1e+03 Score=20.88 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=25.5
Q ss_pred HhhhChhHHHHHHHHHHHHHHHHHhhccccCCC
Q 016645 75 NMSRDFGYYWLRLVIYVVVTICIGTIYLNVGTG 107 (385)
Q Consensus 75 ~~~Rd~~~~~~~~~~~i~~~l~~G~if~~~~~~ 107 (385)
.+-|++.++...++.+.++-.++..+=|=++.+
T Consensus 208 ~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~ 240 (347)
T 3rhw_A 208 QLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRT 240 (347)
T ss_dssp EEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTT
T ss_pred EEEEEeeEEEEEeehhHHHHHHHhheEEeccCC
Confidence 356899999999999998888887765555543
No 8
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=6.66 E-value=1.4e+03 Score=21.27 Aligned_cols=47 Identities=6% Similarity=0.056 Sum_probs=24.1
Q ss_pred hhHHHHHHhhCCCCc---hHHHHHHHHHHHhhHHHHHHHHHhhhhhhccc
Q 016645 139 DMKVFQRERLNGHYG---VTAFVIGNTLSAMPFLIMITFISGTICYFMVR 185 (385)
Q Consensus 139 e~~v~~rE~~~g~Y~---~~~y~~a~~l~~~p~~~i~~~i~~~i~y~~~g 185 (385)
...+..|.-..|-.. ....+.-.+.+.+...++.+++..+++|+..|
T Consensus 357 ~~t~~ir~la~~~~~~~~~~~~~~ke~~~~~~~g~~~~~~~~~~~~~~~~ 406 (473)
T 2zy9_A 357 SATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLVGKVYWDGH 406 (473)
T ss_dssp HHHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444544444433 22333444445556666666666666666555
No 9
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=6.21 E-value=6.7e+02 Score=19.30 Aligned_cols=37 Identities=5% Similarity=0.011 Sum_probs=21.0
Q ss_pred hhhHHHHHHHH---HHHHHHHHHHHHHhcccCccchhhhh
Q 016645 309 WIDLSVIFSMI---ISYRIIFFVMIKISEDVTPWIRGCLA 345 (385)
Q Consensus 309 w~~~~iL~~~~---i~~~~l~~~~L~~~~~~~~~~~~~~~ 345 (385)
...++++++|. ++=++++|+--|++++.......++.
T Consensus 53 ylYIL~vmgffgff~~GImLsYiRSKk~E~s~DPy~~YIe 92 (138)
T 2k21_A 53 ALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIE 92 (138)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTTTTSC
T ss_pred eehHHHHHHHHHHHHHHHHHHHhHhhhccccCCcHHHHHH
Confidence 44444444444 44456777777777766655555443
No 10
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=4.89 E-value=7e+02 Score=22.05 Aligned_cols=88 Identities=15% Similarity=0.016 Sum_probs=0.0
Q ss_pred hChhHHHHHHHHHHHHHHHHHhhccccCC--CchhhhhhhhHHHHHHHHHHHHhhh-hhhhHHhhhHHHHHHhhCCCCch
Q 016645 78 RDFGYYWLRLVIYVVVTICIGTIYLNVGT--GYNSILARGSCASFVFGFVTFMSIG-GFPSFVEDMKVFQRERLNGHYGV 154 (385)
Q Consensus 78 Rd~~~~~~~~~~~i~~~l~~G~if~~~~~--~~~~i~~~~~~l~~~~~~~~~~~~~-~~~~~~~e~~v~~rE~~~g~Y~~ 154 (385)
+-+.....-++..+++.+++|.+|+-.+. ......+....+++.+.-++..+.+ ..|.-...|-+-.=+...|. ..
T Consensus 45 ~~~~ll~~~~~~~~~~~l~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~-~~ 123 (301)
T 1xl4_A 45 SWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM-LG 123 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHH-HH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHH-HH
Q ss_pred HHHHHHHHHHHh
Q 016645 155 TAFVIGNTLSAM 166 (385)
Q Consensus 155 ~~y~~a~~l~~~ 166 (385)
.++.++.+...+
T Consensus 124 ~a~~~g~v~~~~ 135 (301)
T 1xl4_A 124 LAVAASLIYARF 135 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Done!