Query 016645
Match_columns 385
No_of_seqs 207 out of 2059
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 17:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016645.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016645hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtl1 f.23.31.1 (L:1-37) Pho 26.3 38 0.0028 18.3 3.2 24 80-103 14-37 (37)
2 d2nwwa1 f.49.1.1 (A:12-416) Pr 21.0 2.3E+02 0.017 24.0 10.4 30 158-187 34-63 (405)
3 d3dtub2 f.17.2.1 (B:30-129) Ba 16.6 68 0.005 21.7 3.9 30 308-337 30-59 (100)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 15.2 1.1E+02 0.0083 18.4 4.2 30 308-337 4-33 (57)
5 d3ehbb2 f.17.2.1 (B:1-107) Bac 10.0 1.2E+02 0.0084 20.8 3.5 29 309-337 37-65 (107)
6 d1wpga4 f.33.1.1 (A:1-124,A:24 9.1 1.6E+02 0.012 25.7 5.1 68 19-100 7-78 (472)
7 d2hlya1 d.3.1.19 (A:5-206) Hyp 6.8 1.5E+02 0.011 22.7 2.9 39 4-43 128-166 (202)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 5.3 1.3E+02 0.0097 14.9 1.2 6 329-334 20-25 (30)
9 d1fftb2 f.17.2.1 (B:27-117) Cy 5.0 36 0.0026 22.9 -1.6 26 312-337 23-48 (91)
10 d2iuba2 f.17.3.1 (A:286-349) M 4.6 3.7E+02 0.027 15.8 4.2 25 226-250 10-35 (64)
No 1
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=26.33 E-value=38 Score=18.30 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccc
Q 016645 80 FGYYWLRLVIYVVVTICIGTIYLN 103 (385)
Q Consensus 80 ~~~~~~~~~~~i~~~l~~G~if~~ 103 (385)
+..++..++...++++++...|++
T Consensus 14 rtsLy~GlLlifvl~vLFssYfFN 37 (37)
T d2axtl1 14 RTSLYLGLLLILVLALLFSSYFFN 37 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHhcC
Confidence 334445556666777777766653
No 2
>d2nwwa1 f.49.1.1 (A:12-416) Proton glutamate symport protein {Pyrococcus horikoshii [TaxId: 53953]}
Probab=20.96 E-value=2.3e+02 Score=24.00 Aligned_cols=30 Identities=3% Similarity=0.176 Sum_probs=19.0
Q ss_pred HHHHHHHHhhHHHHHHHHHhhhhhhccccc
Q 016645 158 VIGNTLSAMPFLIMITFISGTICYFMVRLH 187 (385)
Q Consensus 158 ~~a~~l~~~p~~~i~~~i~~~i~y~~~g~~ 187 (385)
.+++....+...++.+++++.+..-..++.
T Consensus 34 ~~g~lFi~lL~m~v~PLIf~sii~gi~~L~ 63 (405)
T d2nwwa1 34 PFGDLFVRLLKMLVMPIVFASLVVGAASIS 63 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 355556666666677777777766665554
No 3
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=16.61 E-value=68 Score=21.71 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645 308 KWIDLSVIFSMIISYRIIFFVMIKISEDVT 337 (385)
Q Consensus 308 ~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~ 337 (385)
.+..+.+.+.+.++..++.+...|+++++.
T Consensus 30 ~~v~~i~~~I~~~V~~~l~~~~~~~r~~~~ 59 (100)
T d3dtub2 30 GFILVIIAAITIFVTLLILYAVWRFHEKRN 59 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHBTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 345556667777777788888888876654
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=15.24 E-value=1.1e+02 Score=18.38 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=22.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645 308 KWIDLSVIFSMIISYRIIFFVMIKISEDVT 337 (385)
Q Consensus 308 ~w~~~~iL~~~~i~~~~l~~~~L~~~~~~~ 337 (385)
-|+.++.++.+.++..+++-.++.+.|+..
T Consensus 4 ~~R~~~~~~~~~~i~i~~~s~~~y~~E~~~ 33 (57)
T d2h8pc1 4 HWRAAGAATVLLVIVLLAGSYLAVLAERGA 33 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 477788888888777777777777777654
No 5
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=10.00 E-value=1.2e+02 Score=20.76 Aligned_cols=29 Identities=3% Similarity=0.235 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645 309 WIDLSVIFSMIISYRIIFFVMIKISEDVT 337 (385)
Q Consensus 309 w~~~~iL~~~~i~~~~l~~~~L~~~~~~~ 337 (385)
+..+.+.+.+.++.-++.+...|+++++.
T Consensus 37 ~v~~i~~~I~~~V~~~~~~~~~~~r~~~~ 65 (107)
T d3ehbb2 37 FVLYIITAVTIFVCLLLLICIVRFNRRAN 65 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSBTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 34455555556666677777777765543
No 6
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=9.07 E-value=1.6e+02 Score=25.65 Aligned_cols=68 Identities=9% Similarity=0.149 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCHHH----HHHHHHHHhhhcccCCccCCCCCCCCHHHHHHHHHHHHHHHhhhChhHHHHHHHHHHHHH
Q 016645 19 EAIKNLIDFYQTSQHS----YAAKEKVEGISKVKGTVLDAGGSQASFLMQAFTLTKRSFVNMSRDFGYYWLRLVIYVVVT 94 (385)
Q Consensus 19 ~~~~~l~~~~~~S~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~L~~R~~~~~~Rd~~~~~~~~~~~i~~~ 94 (385)
..++++.+.++.+... ++.+++.++.-.|+ -+.+.+.|+|..+ +..++||..+. +....+++
T Consensus 7 ~~~e~v~~~l~td~~~GLs~~ea~~r~~~~G~N~----l~~~~~~s~~~~~--------~~~~~~~~~~i--L~~aa~ls 72 (472)
T d1wpga4 7 KSTEECLAYFGVSETTGLTPDQVKRHLEKYGHNE----LPAEEGKSLWELV--------IEQFEDLLVRI--LLLAACIS 72 (472)
T ss_dssp SCHHHHHHHHTCCTTTCBCHHHHHHHHHHSCCSS----CCCCCCCCHHHHH--------HHHTCSHHHHH--HHHHHHHH
T ss_pred CCHHHHHHHhCcCcccCcCHHHHHHHHHhcCCCC----CCCCCCCCHHHHH--------HHHHhCHHHHH--HHHHHHHH
Confidence 3456666776655321 23333333332222 1233345655433 33456876553 33334455
Q ss_pred HHHHhh
Q 016645 95 ICIGTI 100 (385)
Q Consensus 95 l~~G~i 100 (385)
+++|..
T Consensus 73 ~~~~~~ 78 (472)
T d1wpga4 73 FVLAWF 78 (472)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 555543
No 7
>d2hlya1 d.3.1.19 (A:5-206) Hypothetical protein Atu2299 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=6.81 E-value=1.5e+02 Score=22.66 Aligned_cols=39 Identities=10% Similarity=-0.054 Sum_probs=31.0
Q ss_pred cCCCCCCcccccchHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 016645 4 KFETSDDPLEKITTAEAIKNLIDFYQTSQHSYAAKEKVEG 43 (385)
Q Consensus 4 ~~~np~d~~~~~~~~~~~~~l~~~~~~S~~~~~~~~~~~~ 43 (385)
+.+|+.|+ ......+..+++...|.++....++......
T Consensus 128 dL~~~GDF-~~~p~~d~T~~l~~~~~~~~~~~Dl~~v~t~ 166 (202)
T d2hlya1 128 DLGQSGDF-FYRSEPEATARRFADWHKQAMIGDMASVAAN 166 (202)
T ss_dssp CCCSTTCE-EEEECHHHHHHHTTTGGGCHHHHHHHHHHHH
T ss_pred HhcCCCCe-eecCChHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45899999 6667778889999999999988877655443
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.26 E-value=1.3e+02 Score=14.92 Aligned_cols=6 Identities=33% Similarity=0.246 Sum_probs=2.2
Q ss_pred HHHHhc
Q 016645 329 MIKISE 334 (385)
Q Consensus 329 ~L~~~~ 334 (385)
++-+++
T Consensus 20 aiffre 25 (30)
T d2axtt1 20 AIFFRE 25 (30)
T ss_dssp HHHTSC
T ss_pred HHHhcC
Confidence 333333
No 9
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.04 E-value=36 Score=22.92 Aligned_cols=26 Identities=8% Similarity=-0.074 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccC
Q 016645 312 LSVIFSMIISYRIIFFVMIKISEDVT 337 (385)
Q Consensus 312 ~~iL~~~~i~~~~l~~~~L~~~~~~~ 337 (385)
+..++.+.+++.++.+...|+|+++.
T Consensus 23 ~i~~iv~v~V~~~~~~~~~ryR~~~~ 48 (91)
T d1fftb2 23 GLMLIVVIPAILMAVGFAWKYRASNK 48 (91)
T ss_dssp HHTTTTTTHHHHHHHTTTTTTTTSTT
T ss_pred HHHHHHHHHHHHHHHhhheeeeccCC
Confidence 34455566677777777777776543
No 10
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.61 E-value=3.7e+02 Score=15.85 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhcccc-CCCCCCc
Q 016645 226 ITGAGIQGIFMLVSGYFR-LPNDIPK 250 (385)
Q Consensus 226 ~~~~~~~~~~~l~sG~~~-~~~~lp~ 250 (385)
.+.+.+..|..+.+|++- +.+.+|.
T Consensus 10 T~it~iflP~t~i~gifGMN~~~~P~ 35 (64)
T d2iuba2 10 TIIATIFMPLTFIAGIYGMNFEYMPE 35 (64)
T ss_dssp HHHHHHHHHHHHHTTSCC--------
T ss_pred HHHHHHHHHHHHHHhhhccCCCCCCC
Confidence 344556778888888765 5555665
Done!