Query 016646
Match_columns 385
No_of_seqs 172 out of 1352
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 08:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02953 phosphatidate cytidyl 100.0 1.6E-93 3.5E-98 709.6 32.3 367 1-385 1-403 (403)
2 PRK11624 cdsA CDP-diglyceride 100.0 1.1E-53 2.4E-58 416.3 31.2 260 115-379 1-281 (285)
3 PF01148 CTP_transf_1: Cytidyl 100.0 4.5E-45 9.7E-50 345.0 26.9 258 117-379 1-259 (259)
4 COG4589 Predicted CDP-diglycer 100.0 1.2E-44 2.6E-49 339.1 28.0 253 112-379 32-301 (303)
5 COG0575 CdsA CDP-diglyceride s 100.0 7.6E-44 1.6E-48 343.9 29.2 255 115-379 1-262 (265)
6 KOG1440 CDP-diacylglycerol syn 100.0 7.2E-42 1.6E-46 339.8 19.9 317 29-385 35-401 (432)
7 PLN02594 phosphatidate cytidyl 100.0 8.6E-40 1.9E-44 322.3 19.9 161 220-381 95-301 (342)
8 PRK04032 hypothetical protein; 100.0 2E-29 4.4E-34 225.3 11.1 92 282-378 33-125 (159)
9 PF01864 DUF46: Putative integ 99.4 1.8E-12 3.9E-17 118.4 10.2 99 273-376 32-140 (175)
10 KOG4453 Predicted ER membrane 96.4 0.013 2.8E-07 55.8 7.7 74 264-338 169-246 (269)
11 COG0170 SEC59 Dolichol kinase 95.8 0.019 4.1E-07 54.5 6.0 41 267-308 130-170 (216)
12 KOG2468 Dolichol kinase [Lipid 84.8 2.3 5E-05 44.6 6.6 37 268-306 427-463 (510)
13 TIGR01594 holin_lambda phage h 83.0 3.5 7.7E-05 35.1 5.9 58 286-347 48-107 (107)
14 PF01940 DUF92: Integral membr 69.5 13 0.00029 35.7 6.4 53 284-342 149-201 (226)
15 TIGR00297 conserved hypothetic 56.8 30 0.00066 33.5 6.3 55 285-345 155-209 (237)
16 COG0004 AmtB Ammonia permease 54.1 19 0.00041 37.6 4.6 46 314-362 279-326 (409)
17 COG5336 Uncharacterized protei 49.2 46 0.001 28.6 5.4 29 282-310 43-71 (116)
18 PF01066 CDP-OH_P_transf: CDP- 45.6 1.6E+02 0.0035 23.8 8.5 47 319-371 29-76 (101)
19 PF05767 Pox_A14: Poxvirus vir 40.8 1.7E+02 0.0037 24.4 7.3 33 319-353 48-80 (92)
20 PF06796 NapE: Periplasmic nit 36.7 1.4E+02 0.003 22.7 5.7 20 109-128 11-30 (56)
21 COG4944 Uncharacterized protei 34.1 75 0.0016 30.0 4.8 57 285-341 156-212 (213)
22 KOG1440 CDP-diacylglycerol syn 34.1 1.6E+02 0.0035 31.0 7.7 56 111-166 61-116 (432)
23 PRK10666 ammonium transporter; 33.0 60 0.0013 34.1 4.5 54 314-370 302-357 (428)
24 TIGR03644 marine_trans_1 proba 30.1 66 0.0014 33.6 4.2 63 282-356 268-330 (404)
25 TIGR00836 amt ammonium transpo 30.1 43 0.00094 34.8 2.9 77 281-368 253-331 (403)
26 PF10031 DUF2273: Small integr 28.7 1.2E+02 0.0026 22.4 4.3 21 315-335 29-49 (51)
27 PLN02469 hydroxyacylglutathion 28.5 32 0.0007 33.3 1.6 36 329-364 148-183 (258)
28 PLN02962 hydroxyacylglutathion 26.5 32 0.0007 33.3 1.2 28 329-356 165-192 (251)
29 PRK14788 lipoprotein signal pe 23.8 3E+02 0.0066 25.9 7.1 37 321-357 92-132 (200)
30 PF13829 DUF4191: Domain of un 23.5 1.9E+02 0.0041 27.9 5.7 41 295-338 35-78 (224)
31 COG1836 Predicted membrane pro 22.6 1.9E+02 0.004 28.3 5.5 66 273-344 143-217 (247)
32 TIGR03802 Asp_Ala_antiprt aspa 21.8 1.8E+02 0.0039 31.6 5.9 70 269-348 20-91 (562)
33 PF10710 DUF2512: Protein of u 20.6 2.5E+02 0.0054 24.9 5.5 24 312-335 27-51 (136)
No 1
>PLN02953 phosphatidate cytidylyltransferase
Probab=100.00 E-value=1.6e-93 Score=709.62 Aligned_cols=367 Identities=68% Similarity=1.084 Sum_probs=301.7
Q ss_pred CccchhhcccCCccccccccccCCCCCCCCCcceeeccCCCCCccceeeccCCceeeeeccccccchhhHHHHHhhcCCC
Q 016646 1 MASFVEIDRCSHLISLPLTSLNACPCRPSSNKILIFTQKQPPKLNVRIVFNRPKFTLRVRQTGIDTNRRMISAVARAEPD 80 (385)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (385)
||+|+|+ +++||+|||||||+|+|+||+||+|+ +|++-.|+||+||+|+|++|++||++|||||||||
T Consensus 1 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (403)
T PLN02953 1 MASFAEL--------VLSTSRCTCPCRSFSKKPLILPPLSG----LRLVGGDTKPLFRSGLGPISVKRRFLTAVARAESD 68 (403)
T ss_pred CchHHHH--------HHHhhhccCcCCCCCcCceecCcccc----cccCCCCCccccccCCCchhHHHHHHHHHHHhhhh
Confidence 8999999 99999999999999999999999997 56777799999999999999999999999999999
Q ss_pred CCCCCcccccccCCCCccccccCCCChhhhhHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 016646 81 HLDDGNLKEGIDNGHKLVVSEKSVSDSGSQQKASQLRKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAREYFELV 160 (385)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~Riitalvl~~lv~~i~~~g~~~f~~l~~~i~~lal~E~~~l~ 160 (385)
|+|||||+||+||+||+|++|+ |+++.+|+++|++||++++++++.+++.|+|+|.+++++++.++++||++|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~RIiSglvl~~l~l~vV~~GGw~F~~~va~iv~lg~~E~frmv 142 (403)
T PLN02953 69 QLGDDDHAKEIDRIHDLQNVED------KQKKASQLKKRVIFGIGIGLPVGCVVLAGGWFFTVALAASVFIGSREYFELV 142 (403)
T ss_pred hccCCCccchhhhhcccccccc------cccccccHHHHHHHHHHHHHHHHheeeeCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999977 6777889999999999998888888889999999999999999999999999
Q ss_pred HhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHhHHHHH
Q 016646 161 RSRGIAAGMTPPPRYVSRVCSVICAFMPILTLYFGQIDVSVTFAAFVVAMALLLQRGNPRFAQLSSTIFGLFYCGYLPCF 240 (385)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~fl~~~~l~~~~~~~~~~~~~~t~~gl~Yi~~~~~~ 240 (385)
+.++..+...++.......+.+.+..++...++.+.....+....+.++..++.++.+.++.+++.+++|++|+++++++
T Consensus 143 ~~~gi~p~~~~~~~~~~~~g~v~~~~~~v~~~~~g~~~~~l~l~~~~i~~~ll~~~~~~~~~di~~s~fgl~Yig~lpsf 222 (403)
T PLN02953 143 RSRGIAKGMTPPPRYVSRVCSVICALMPILTLYFGNIDILVTSAAFLVAIALLVQRGSPRFAQLSSTMFGLFYCGYLPCF 222 (403)
T ss_pred HhcCCCccccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 88877544322333322222222333333222222211111122223333444556556788999999999999999999
Q ss_pred HHHHhhccccc----------------------ch-----hcccch---------hHHHHhhhHHHHHhhCCcccccCCC
Q 016646 241 WVKLRCGLSAP----------------------AL-----NTGIGV---------SWPILLGGLPHWTAFGRTQLTSISP 284 (385)
Q Consensus 241 li~lr~~~~~~----------------------~~-----~~~~g~---------~w~~~~g~~~vw~~fGKhKL~~ISP 284 (385)
|+.+|.....+ .. ....|. +|..|+++|+.++.|||||+++|||
T Consensus 223 ~v~Lr~~~~~~~~~~~~~~~f~~l~~~~~~~~p~~~~~~~~~~~Gl~~~l~~~~~vw~~Di~AY~~G~~fGk~kl~~ISP 302 (403)
T PLN02953 223 WVKLRCGLAAPALNTGKLSPFISLKFSIGKTWPILLGGQAHWTVGLVATLISFSGVIATDTFAFLGGKAFGRTPLTSISP 302 (403)
T ss_pred HHHHhhccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCC
Confidence 99999411000 00 001122 4555678889999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCcchhhhhhH
Q 016646 285 KKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDS 364 (385)
Q Consensus 285 kKTwEG~iGGll~svl~~~l~~~~~~~~~~~~~~illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGHGGiLDR~DS 364 (385)
||||||++||++++++++.+++.++.|+..+++.+++|++++++||+|||+||++||++||||||+++|||||+|||+||
T Consensus 303 kKTwEG~iGGil~~vlv~~l~~~~l~~~~~~~~~i~lg~li~~~~~~GDL~eS~iKR~~gVKDsG~liPGHGGiLDR~DS 382 (403)
T PLN02953 303 KKTWEGTFVGLVGCIAITILLSKSLSWPQSLFSSIAFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDS 382 (403)
T ss_pred CCeeeeehhHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHhhHHHHHHHhHccCCCCccccCCCCCcchhhHhH
Confidence 99999999999999999988877776666677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCC
Q 016646 365 YIFTGALAYSFVKTFLPLYGV 385 (385)
Q Consensus 365 lLfaaP~~Y~~~~~~~~~~~~ 385 (385)
++|++|++|++++..+|+|||
T Consensus 383 llfaaPv~y~~~~~~~~~~~~ 403 (403)
T PLN02953 383 YIFTGALAYSFIKTSLKLYGV 403 (403)
T ss_pred HHHHHHHHHHHHHHhccccCC
Confidence 999999999999999999997
No 2
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=100.00 E-value=1.1e-53 Score=416.30 Aligned_cols=260 Identities=26% Similarity=0.329 Sum_probs=174.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHH-HHH
Q 016646 115 QLRKRIGFGLGIGIFVGGVVL-AGGWVFTVCFAAAVFVGAREYFELVRSRGIAAGMTPPPRYVSRVCSVICAFMPI-LTL 192 (385)
Q Consensus 115 ~l~~Riitalvl~~lv~~i~~-~g~~~f~~l~~~i~~lal~E~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~-~~~ 192 (385)
||++|++||++++++++.+++ .|++.|..++++++++++|||++|.+.++.. ........++........ ...
T Consensus 1 ml~~Riita~vlv~l~l~~i~~~~~~~f~~l~~~~~~l~~~E~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 75 (285)
T PRK11624 1 MLKYRLITAFILIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFASRS-----QRVWLAVLCGLLLALMLFLLPE 75 (285)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccc-----hhHHHHHHHHHHHHHHHHHHHH
Confidence 588999999988766665554 4779999999999999999999998765431 111111111111111100 000
Q ss_pred hhhh--hHH----HHHHHHH-HHHHHHHHhcCC-cc-hhh--hHHHHHHHHHHhHHHHHHHHHhhcc--c----cc-chh
Q 016646 193 YFGQ--IDV----SVTFAAF-VVAMALLLQRGN-PR-FAQ--LSSTIFGLFYCGYLPCFWVKLRCGL--S----AP-ALN 254 (385)
Q Consensus 193 ~~~~--~~~----~~~~~~f-l~~~~l~~~~~~-~~-~~~--~~~t~~gl~Yi~~~~~~li~lr~~~--~----~~-~~~ 254 (385)
+... ... ......+ .+.......+++ .. ..+ ...+.+|.+|++..+...+.+|... . .. ...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~G~~~vl 155 (285)
T PRK11624 76 YHHNIHQPLVEISLWASLGWWIVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAWWLL 155 (285)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcccccccccCCHHHHH
Confidence 1000 000 0000111 111111222221 11 112 3356788888665555555666411 0 00 001
Q ss_pred cccchhHHHHhhhHHHHHhhCCcccc-cCCCCCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHH
Q 016646 255 TGIGVSWPILLGGLPHWTAFGRTQLT-SISPKKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGD 333 (385)
Q Consensus 255 ~~~g~~w~~~~g~~~vw~~fGKhKL~-~ISPkKTwEG~iGGll~svl~~~l~~~~~~~~~~~~~~illglliav~s~lGD 333 (385)
.....+|..|.++|++++.||||||+ +|||||||||++||++++++++.+++.+...+.+++++++++++++++||+||
T Consensus 156 ~l~~~vw~sDt~AYf~Gr~fGk~KL~P~ISPkKTwEG~iGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GD 235 (285)
T PRK11624 156 YVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWEGFIGGLATAAVISWLFGMWAPLDVAPVTLLICSIVAALASVLGD 235 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCcCCCCCchhhhHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHhH
Confidence 11223577788999999999999996 99999999999999999999998887665433456677899999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Q 016646 334 LTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKTF 379 (385)
Q Consensus 334 L~ES~iKR~~GVKDSG~iiPGHGGiLDR~DSlLfaaP~~Y~~~~~~ 379 (385)
|+||++||++||||||+++|||||+|||+||++|++|++|++....
T Consensus 236 L~ES~lKR~~gVKDSG~llPGHGGiLDR~DSLlfa~P~~~~~~~~~ 281 (285)
T PRK11624 236 LTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLV 281 (285)
T ss_pred HHHHHHhhccCCCCCcCcCCCcCcchhhHhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988765543
No 3
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=100.00 E-value=4.5e-45 Score=345.02 Aligned_cols=258 Identities=32% Similarity=0.436 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHhhhh
Q 016646 117 RKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAREYFELVRSRGIAAGMTPPPRYVSRVCSVICAFMPILTLYFGQ 196 (385)
Q Consensus 117 ~~Riitalvl~~lv~~i~~~g~~~f~~l~~~i~~lal~E~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~ 196 (385)
|||++|+++++++++..++.+++.+..++.++..++.+|++++.+.++.+.. ... ................+...
T Consensus 1 k~Ri~t~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~ 75 (259)
T PF01148_consen 1 KQRIITAIILIPIFILLLFLGPWYFLLLVAVIIFLGFWELFRLFRIKSRSKF----RLI-IRILSWIFFLILFLFFYLRW 75 (259)
T ss_pred CEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccch----hhH-HHHHHHHHHHHHHHHhhhhH
Confidence 5899999988887888888899999999999999999999999887654321 111 11111111111111111111
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHhHHHHHHHHHhhcccccchhcccchhHHHHhhhHHHHHhhCC
Q 016646 197 IDVSVTFAAFVVAMALLLQRGNPRFAQLSSTIFGLFYCGYLPCFWVKLRCGLSAPALNTGIGVSWPILLGGLPHWTAFGR 276 (385)
Q Consensus 197 ~~~~~~~~~fl~~~~l~~~~~~~~~~~~~~t~~gl~Yi~~~~~~li~lr~~~~~~~~~~~~g~~w~~~~g~~~vw~~fGK 276 (385)
.................+...+.+.++...+.++.+|+++..............+.........|.-|..++++++.|||
T Consensus 76 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~gD~~A~l~G~~fGk 155 (259)
T PF01148_consen 76 LIPYFFATILIIALLLFLVLGERRIRRIISTLFGLIYFGIFLLLLLIFFWFFGPPLALIGILILGIGDSFAYLVGRRFGK 155 (259)
T ss_pred HHHHHHHHHHHHhhhHHhhhcchHHHHHHHHHHHHHHHhHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 11111111111111222222234456677788888887765522221111111111111112234456678899999999
Q ss_pred cccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCC
Q 016646 277 TQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFCWP-RYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGH 355 (385)
Q Consensus 277 hKL~~ISPkKTwEG~iGGll~svl~~~l~~~~~~~~-~~~~~~illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGH 355 (385)
|+.+++||||||||++||++++++++.++..+...+ .++++.+++++++++.+++|||+||.+||++||||||+++|||
T Consensus 156 ~~~~~~sp~KT~EGsi~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gdl~~S~~KR~~~iKD~g~lipgh 235 (259)
T PF01148_consen 156 HLAPKISPKKTWEGSIAGFISSFIISFLLLYYLSSFFLSWWQAILISLLASIVEAFGDLFESAIKRDAGIKDSGNLIPGH 235 (259)
T ss_pred CcCCCCCCCCCHHHHhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCc
Confidence 944589999999999999999999988887766433 5678889999999999999999999999999999999999999
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHH
Q 016646 356 GGILDRVDSYIFTGALAYSFVKTF 379 (385)
Q Consensus 356 GGiLDR~DSlLfaaP~~Y~~~~~~ 379 (385)
||+|||+||+++++|++|+++++|
T Consensus 236 Gg~lDr~d~~l~~~~~~~~~~~~f 259 (259)
T PF01148_consen 236 GGILDRFDSLLFAAPVFYILLKIF 259 (259)
T ss_pred CCcccchHhHHHHHHHHHHHHHHC
Confidence 999999999999999999998864
No 4
>COG4589 Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]
Probab=100.00 E-value=1.2e-44 Score=339.14 Aligned_cols=253 Identities=28% Similarity=0.419 Sum_probs=190.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHH
Q 016646 112 KASQLRKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAREYFELVRSRGIAAGMTPPPRYVSRVCSVICAFMPILT 191 (385)
Q Consensus 112 ~~s~l~~Riitalvl~~lv~~i~~~g~~~f~~l~~~i~~lal~E~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~ 191 (385)
+..|++.||.++|++++++..++..|.|....+++++++.+++||.++...+.-+ +...+ .++..+|+++
T Consensus 32 ~~~~l~~RI~aWW~mv~i~~~~~~l~~~~~l~lF~~iSflalrEfltl~ptr~~d--------~~~l~--~~Y~~lplqy 101 (303)
T COG4589 32 KIDELNLRIRAWWVMVIIFSLVISLPRWMTLTLFGLISFLALREFLTLIPTRRPD--------HLALV--WFYWVLPLQY 101 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccCC--------ccchh--hhhhhhhHhH
Confidence 4668999999999998888888889999999999999999999999999876421 11222 3456788876
Q ss_pred Hhh--h---hhHHHHHHHHHHHHHHHHHhcCCc-ch-hhhHHHHHHHHHHhHHHHHHHHHhhcccccchhcccchhHHH-
Q 016646 192 LYF--G---QIDVSVTFAAFVVAMALLLQRGNP-RF-AQLSSTIFGLFYCGYLPCFWVKLRCGLSAPALNTGIGVSWPI- 263 (385)
Q Consensus 192 ~~~--~---~~~~~~~~~~fl~~~~l~~~~~~~-~~-~~~~~t~~gl~Yi~~~~~~li~lr~~~~~~~~~~~~g~~w~~- 263 (385)
++. + ....++.++.|+....+....+++ .+ ++.+.-.+|.+-..+..++...+-. ++.+. ...++..++
T Consensus 102 ~~i~i~wy~mf~ifipvY~fL~Lp~l~~L~gdt~gFl~~~s~i~wg~mltvfcish~~~llt-L~~~~--~~~~~ll~if 178 (303)
T COG4589 102 LLIGIDWYEMFIIFIPVYGFLILPILMVLVGDTSGFLHRVSAIQWGWMLTVFCISHAAYLLT-LDITN--FQGGALLVIF 178 (303)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHhHHHHHHHHHHHHHHHhhHHHhh-CCCCC--cCccchHHHH
Confidence 542 2 222334566676665555444443 34 3445556888877777777655443 11111 111221111
Q ss_pred --------HhhhHHHHHhhCCcccc-cCCCCCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHH
Q 016646 264 --------LLGGLPHWTAFGRTQLT-SISPKKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDL 334 (385)
Q Consensus 264 --------~~g~~~vw~~fGKhKL~-~ISPkKTwEG~iGGll~svl~~~l~~~~~~~~~~~~~~illglliav~s~lGDL 334 (385)
++.-|..+..|||||.. ++||||||||++||++.+++++.+++++ .|.++.++++.|++++..|.+||+
T Consensus 179 lli~~q~nDV~QYvwGk~fGk~Ki~P~vSPnKTveGl~GGilt~~~~~~~l~~l--Tp~~~lqa~~~~~~I~l~GF~Gdl 256 (303)
T COG4589 179 LLILTELNDVAQYVWGKSFGKRKIVPKVSPNKTVEGLIGGILTTMIASAILGLL--TPLNTLQALLAGLLIGLSGFCGDL 256 (303)
T ss_pred HHHHHHHHHHHHHHHhhhcCCcccCCCcCCcchHHHHhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhhhHH
Confidence 12234444599999995 9999999999999999999998888733 377899999999999999999999
Q ss_pred HHHHHhhcCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Q 016646 335 TESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKTF 379 (385)
Q Consensus 335 ~ES~iKR~~GVKDSG~iiPGHGGiLDR~DSlLfaaP~~Y~~~~~~ 379 (385)
+.|++||+.||||||+++|||||+|||+||++|+||+++++.+++
T Consensus 257 vmSaiKRd~gvKD~G~li~GHGGiLDR~DSL~FtAPiffh~~ry~ 301 (303)
T COG4589 257 VMSAIKRDVGVKDSGKLLPGHGGILDRVDSLIFTAPIFFHFIRYC 301 (303)
T ss_pred HHHHHHhhcCCCcccccCCCCccHHHHHHHHHHhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999875
No 5
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=100.00 E-value=7.6e-44 Score=343.87 Aligned_cols=255 Identities=29% Similarity=0.382 Sum_probs=167.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHHHHHHHHhh
Q 016646 115 QLRKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAREYFELVRSRGIAAGMTPPPRYVSRVCSVICAFMPILTLYF 194 (385)
Q Consensus 115 ~l~~Riitalvl~~lv~~i~~~g~~~f~~l~~~i~~lal~E~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~ 194 (385)
|+++|++++.++...+....+.+++.|.++..++++.+.||++++.+.+.... ......... .....+......
T Consensus 1 ~~~~r~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~ 74 (265)
T COG0575 1 MLKQRVITAIVLLILFLLALLVGGLYFALLVLLLAILAILEAYRANRFAVLAG-----PLILGLPID-LGLVLLDGRRLL 74 (265)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-----hHHHHHHHH-HHHHHHHHHHHh
Confidence 47899999987765554444445999999999999999999999998765431 111111111 011111100001
Q ss_pred hhh--HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHhHHHHHHHHHhhccc---ccchhcccchhHHHHhhhHH
Q 016646 195 GQI--DVSVTFAAFVVAMALLLQRGNPRFAQLSSTIFGLFYCGYLPCFWVKLRCGLS---APALNTGIGVSWPILLGGLP 269 (385)
Q Consensus 195 ~~~--~~~~~~~~fl~~~~l~~~~~~~~~~~~~~t~~gl~Yi~~~~~~li~lr~~~~---~~~~~~~~g~~w~~~~g~~~ 269 (385)
... ........+..... . ........+......+..|.++.+......+.... ..........+|..|.++|+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~l~~~vw~~Di~Ayf 152 (265)
T COG0575 75 GDGKETLLGFLLGFLLGLV-L-LGVIYYLSDSLFKLFGLLYVGVGLLALLPFRLGVLYSGLILLLLLFLGVWAGDIGAYF 152 (265)
T ss_pred hhHHHHHHHHHHHHHHHHH-H-HHhhhhHHhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhHHH
Confidence 111 11111111111101 1 11111223334455667777665444443332110 00000112346778889999
Q ss_pred HHHhhCCcccc-cCCCCCCchhhHHHHHHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCC
Q 016646 270 HWTAFGRTQLT-SISPKKTWEGTIVGLGGCIATTVVLSKIFC-WPRYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKD 347 (385)
Q Consensus 270 vw~~fGKhKL~-~ISPkKTwEG~iGGll~svl~~~l~~~~~~-~~~~~~~~illglliav~s~lGDL~ES~iKR~~GVKD 347 (385)
+++.|||||++ ++||||||||++||.+++++++........ .+.+++..+++++++++++|+|||+||++||++||||
T Consensus 153 ~Gr~fGk~kl~p~iSP~KT~eGfigG~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~lGDL~eS~iKR~~gvKD 232 (265)
T COG0575 153 VGRRFGKHKLAPKISPKKTWEGFIGGALGAVLVAVLVIFLLSSLILNIWTLLILGLLLVLTSQLGDLFESYIKRLLGIKD 232 (265)
T ss_pred HHHHcCCCCCCCcCCCCCchHHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCC
Confidence 99999999986 899999999999999999998888776654 3445677789999999999999999999999999999
Q ss_pred CCCCCCCCcchhhhhhHHHHHHHHHHHHHHHH
Q 016646 348 SGSLIPGHGGILDRVDSYIFTGALAYSFVKTF 379 (385)
Q Consensus 348 SG~iiPGHGGiLDR~DSlLfaaP~~Y~~~~~~ 379 (385)
||+++|||||+|||+||++++ ++|++...+
T Consensus 233 sg~liPGHGGilDR~Dsl~~~--~~~~~~~~~ 262 (265)
T COG0575 233 SGWLIPGHGGILDRFDSLLFV--AVYLFLLLF 262 (265)
T ss_pred cCCCCCCcCcccccHhhHHHH--HHHHHHHHH
Confidence 999999999999999999998 666655543
No 6
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=100.00 E-value=7.2e-42 Score=339.84 Aligned_cols=317 Identities=27% Similarity=0.254 Sum_probs=218.1
Q ss_pred CCCcceeeccCCCCCccceeeccCCceeee-eccccccchhhHHHHHhhcCCCCCCCCcccccccCCCC-ccccccCCCC
Q 016646 29 SSNKILIFTQKQPPKLNVRIVFNRPKFTLR-VRQTGIDTNRRMISAVARAEPDHLDDGNLKEGIDNGHK-LVVSEKSVSD 106 (385)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 106 (385)
..+| +.++.|+ -|. |.+-||+++ .|..|++..||.+++++++|.+++++++++++++.++. +|++++...=
T Consensus 35 ~~~~--~~~~~s~----~~~-p~~~~~~l~~~~~~~~n~~~R~i~t~~mi~~f~~i~~~g~~~~~~lv~~iQi~~~~Eii 107 (432)
T KOG1440|consen 35 RTRK--IRPPVSK----DRT-PVRLKPLLSALRSRWKNFFRRGILTLAMISGFFLIIYMGHKYLMALVLVIQIKCFKEII 107 (432)
T ss_pred cccc--cCCCCCC----CCC-cccchhhhhhCCCCceeeehHHHHHHHHHhccEEEEecCcchhhhhhhhHHHHHHHHHH
Confidence 4455 5555553 233 456688884 88999999999999999999999999999999999966 8887663221
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCChhhHHHHHHHHHHH
Q 016646 107 SGSQQKASQLRKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAREYFELVRSRGIAAGMTPPPRYVSRVCSVICAF 186 (385)
Q Consensus 107 ~~~~~~~s~l~~Riitalvl~~lv~~i~~~g~~~f~~l~~~i~~lal~E~~~l~~~~~~~~~~~~~~~~~~~v~~~~~~~ 186 (385)
+ .+++.++.++|..+..+....+..+.+.+++-+..-.+...+..-.|++++++-.+ ...+..|+..++...+.+
T Consensus 108 ~-i~~~~~~~k~lp~f~~l~w~fl~t~~yf~yg~~~~~yf~~v~~~~~~l~~LV~yh~----fi~f~lYi~gf~~FV~sL 182 (432)
T KOG1440|consen 108 A-IGRKVSREKDLPWFRLLNWYFLLTVNYFVYGEILVAYFAAVFIRDRFLFFLVRYHR----FICFALYLIGFVSFVLSL 182 (432)
T ss_pred H-HhhccccccCCceeehhhhHHHHHHHHHHhHHHHHHHHHHHHhhhHHHHHHHHhcc----cccHHHHHHHHHHHHHHh
Confidence 1 23445566777777765554555566666777766667777788899999988433 334555554443333333
Q ss_pred HH-HHHHhhhhhHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHhHHHHHHHHHhhcccccchhcccchhHHHHh
Q 016646 187 MP-ILTLYFGQIDVSVTFAAFVVAMALLLQRGNPRFAQLSSTIFGLFYCGYLPCFWVKLRCGLSAPALNTGIGVSWPILL 265 (385)
Q Consensus 187 i~-~~~~~~~~~~~~~~~~~fl~~~~l~~~~~~~~~~~~~~t~~gl~Yi~~~~~~li~lr~~~~~~~~~~~~g~~w~~~~ 265 (385)
.+ .+..+++.+++.-..+++++....+..++..+......+.++++||. ++
T Consensus 183 ~k~~yk~QFg~fawtH~sll~Vv~qs~l~i~N~feG~fWFl~P~~lvicn----------------------------Di 234 (432)
T KOG1440|consen 183 RKGIYKLQFGLFAWTHMSLLLVVTQSHLVIQNLFEGLFWFLVPAGLVICN----------------------------DI 234 (432)
T ss_pred hhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhHhheeC----------------------------ch
Confidence 33 22233444443323333333333333333222211111122222211 22
Q ss_pred hhHHHHHhhCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc---c-----------------C-------------
Q 016646 266 GGLPHWTAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFC---W-----------------P------------- 312 (385)
Q Consensus 266 g~~~vw~~fGKhKL~~ISPkKTwEG~iGGll~svl~~~l~~~~~~---~-----------------~------------- 312 (385)
.+|.++..|||+||-++||||||||++||.++.++.+++++..+. + |
T Consensus 235 ~AY~~Gf~fGktPLiklSPKKTwEGFiGg~~~tvv~~i~~s~vL~~~~~~~cp~~d~~t~~~~~c~p~~~F~~~~y~lp~ 314 (432)
T KOG1440|consen 235 FAYLFGFFFGKTPLIKLSPKKTWEGFIGGTFGTVVFGILFSYVLGHYTFFTCPVKDFSTTPLLSCEPKPLFEPQTYGLPG 314 (432)
T ss_pred HHHHHhhhhcCCcccccCCCCccchhhchhHHHHHHHHHHHHHhccCeEEEecccccCCCCccccCcccccCcceecCCc
Confidence 344455589999999999999999999998888888877765421 0 0
Q ss_pred -----c---------chHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHH
Q 016646 313 -----R---------YLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKT 378 (385)
Q Consensus 313 -----~---------~~~~~illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGHGGiLDR~DSlLfaaP~~Y~~~~~ 378 (385)
. ..++.+.+|...++.|.+||++||++||+++|||+|+.||||||++||+|+.++.+-++|.|.+.
T Consensus 315 ~i~~~i~~k~is~~p~~~Hsial~~faS~iaPFGGFfASgfKRafKiKDFG~~IPGHGGI~DR~DCQ~lma~Fay~Yi~S 394 (432)
T KOG1440|consen 315 VISITIRLKSISLPPFQFHSIALGLFASFIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQILMATFAYVYIQS 394 (432)
T ss_pred eeeeeccccccccchHHHHHHHHHHHHHhhccchhHHHHHhHHhhcCCcccccCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 0 13567899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCC
Q 016646 379 FLPLYGV 385 (385)
Q Consensus 379 ~~~~~~~ 385 (385)
++..+++
T Consensus 395 FI~~~~~ 401 (432)
T KOG1440|consen 395 FIRLPGV 401 (432)
T ss_pred HhccCCH
Confidence 9877664
No 7
>PLN02594 phosphatidate cytidylyltransferase
Probab=100.00 E-value=8.6e-40 Score=322.27 Aligned_cols=161 Identities=29% Similarity=0.368 Sum_probs=130.6
Q ss_pred chhhhHHHHHHHHHHhHHHHHHHHHhhcccccchhcccchhHHHHhhhHHHHHhhCCcccccCCCCCCchhhHHHHHHHH
Q 016646 220 RFAQLSSTIFGLFYCGYLPCFWVKLRCGLSAPALNTGIGVSWPILLGGLPHWTAFGRTQLTSISPKKTWEGTIVGLGGCI 299 (385)
Q Consensus 220 ~~~~~~~t~~gl~Yi~~~~~~li~lr~~~~~~~~~~~~g~~w~~~~g~~~vw~~fGKhKL~~ISPkKTwEG~iGGll~sv 299 (385)
.+.+.+.+.++++|+++..++++. ...............+|..|+++|+.++.||||||.++||||||||++||+++++
T Consensus 95 qf~~~a~t~~~llyV~~~~~~ii~-ni~~G~~w~~l~~~lV~~nDi~AY~~G~~fGk~kL~~iSPkKTwEGfiGg~i~T~ 173 (342)
T PLN02594 95 QFGQYAWTHMILIVVFTQSSFTVA-NIFEGIFWFLLPASLIVINDIAAYLFGFFFGRTPLIKLSPKKTWEGFIGASVTTL 173 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HccccHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccCCCCchhhhHHHHHHHH
Confidence 578899999999999987777652 1100000000111235666778899999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---c---C------------------------------------cc----hHHHHHHHHHHHHHHhHHH
Q 016646 300 ATTVVLSKIFC---W---P------------------------------------RY----LPSAIVFGFLNFFGSVFGD 333 (385)
Q Consensus 300 l~~~l~~~~~~---~---~------------------------------------~~----~~~~illglliav~s~lGD 333 (385)
+++.+++.++. + | .+ .++++++|++++++||+||
T Consensus 174 i~~~~~~~~~~~~~~~~cp~~~~~~~~~~C~p~~~f~~~~~~~p~~~~~~~~~~~i~~~~~~~h~l~l~l~aSl~a~fGd 253 (342)
T PLN02594 174 ISAFYLANIMGKFQWLTCPRKDLSTGWLECDPDPLFKPETYPLPGWIPRWFPWKEVSVLPVQWHALSLGLFASIIAPFGG 253 (342)
T ss_pred HHHHHHHHHhcccccccCCccccccCcccCCCccccccccccCCccccccccccccccchHHHHHHHHHHHHHHHHHhhh
Confidence 99998876531 0 0 01 4678999999999999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhh
Q 016646 334 LTESMIKRDAGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFVKTFLP 381 (385)
Q Consensus 334 L~ES~iKR~~GVKDSG~iiPGHGGiLDR~DSlLfaaP~~Y~~~~~~~~ 381 (385)
++||++||++||||||+++|||||+|||+||+++++|++|++...++.
T Consensus 254 lfaS~~KR~~~IKDfG~~IPGHGGilDRfDs~l~~~~f~y~y~~~fi~ 301 (342)
T PLN02594 254 FFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFAYIYYQSFIV 301 (342)
T ss_pred HHHHHHHHccCCCcccCccCCCccccccccHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999988888763
No 8
>PRK04032 hypothetical protein; Provisional
Probab=99.96 E-value=2e-29 Score=225.29 Aligned_cols=92 Identities=29% Similarity=0.427 Sum_probs=82.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCcchhh
Q 016646 282 ISPKKTWEGTIVGLGGCIATTVVLSKIFCWP-RYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILD 360 (385)
Q Consensus 282 ISPkKTwEG~iGGll~svl~~~l~~~~~~~~-~~~~~~illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGHGGiLD 360 (385)
+||||||||++||++++++++.+++.+...+ .++.+.+++|++++++||+|||+||++||++|||| |+++| +||
T Consensus 33 iSP~KTwEG~iGGv~~~~l~~~~~~~~~~~~~~~~~~~~~~g~li~v~~~~GDL~eS~iKR~~gVKD-g~~iP----iLD 107 (159)
T PRK04032 33 LGDGKTWRGLIGGILFGTLVGLIQNLLVPAYIGALGVAIILAFLLSFGALLGDMLGSFIKRRLGLER-GAPAP----LLD 107 (159)
T ss_pred CCCCCcHHHhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCCC-cCccc----chh
Confidence 9999999999999999999998887665432 23566889999999999999999999999999999 88888 999
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 016646 361 RVDSYIFTGALAYSFVKT 378 (385)
Q Consensus 361 R~DSlLfaaP~~Y~~~~~ 378 (385)
|+||++|++|++|++...
T Consensus 108 RiDsll~a~p~~~l~~~l 125 (159)
T PRK04032 108 QLDFVVGALLFAYLVAPV 125 (159)
T ss_pred hhHHHHHHHHHHHHHHhh
Confidence 999999999999987654
No 9
>PF01864 DUF46: Putative integral membrane protein DUF46; InterPro: IPR002726 This archaebacterial protein has no known function. It contains several predicted transmembrane regions, suggesting it is an integral membrane protein.
Probab=99.39 E-value=1.8e-12 Score=118.42 Aligned_cols=99 Identities=29% Similarity=0.441 Sum_probs=77.9
Q ss_pred hhCCcccc--c-CCCCCCchhhHHHHHHHHHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 016646 273 AFGRTQLT--S-ISPKKTWEGTIVGLGGCIATTVVLSKIFC-------WPRYLPSAIVFGFLNFFGSVFGDLTESMIKRD 342 (385)
Q Consensus 273 ~fGKhKL~--~-ISPkKTwEG~iGGll~svl~~~l~~~~~~-------~~~~~~~~illglliav~s~lGDL~ES~iKR~ 342 (385)
-+||+--. + .-.||||||+++|++++++++.+.+.... ...+..+.+..|++.++.+.+||+.-|.+||+
T Consensus 32 D~G~~~~DGrRilGdgKTwrG~i~gvl~g~l~g~i~~~l~~~~~~~~~~~~~~~~~~~~g~ll~~gamlGDl~~SFIKRR 111 (175)
T PF01864_consen 32 DFGKTFRDGRRILGDGKTWRGFIGGVLAGTLVGIIQGLLLPLSIFALYFYGSLFFNLLLGFLLGLGAMLGDLPGSFIKRR 111 (175)
T ss_pred cCCCccCCCCEecCCCCeEEeeeHHHHHHHHHHHHHHHHhhhcccccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 44454333 3 78999999999999999999988766522 12234566788999999999999999999999
Q ss_pred CCCCCCCCCCCCCcchhhhhhHHHHHHHHHHHHH
Q 016646 343 AGVKDSGSLIPGHGGILDRVDSYIFTGALAYSFV 376 (385)
Q Consensus 343 ~GVKDSG~iiPGHGGiLDR~DSlLfaaP~~Y~~~ 376 (385)
.|++.+.. .| ++|++|+++.+..+.|.+.
T Consensus 112 lgi~~G~~-ap----~lDQldf~lgall~~~~~~ 140 (175)
T PF01864_consen 112 LGIPRGAP-AP----GLDQLDFVLGALLLLYLFA 140 (175)
T ss_pred cCCCCCCc-Cc----cchhHHHHHHHHHHHHHHH
Confidence 99996554 45 5999999999987776644
No 10
>KOG4453 consensus Predicted ER membrane protein [Function unknown]
Probab=96.36 E-value=0.013 Score=55.83 Aligned_cols=74 Identities=16% Similarity=0.020 Sum_probs=50.8
Q ss_pred HhhhHHHHHhhCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHhc-cCcchHH--H-HHHHHHHHHHHhHHHHHHHH
Q 016646 264 LLGGLPHWTAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFC-WPRYLPS--A-IVFGFLNFFGSVFGDLTESM 338 (385)
Q Consensus 264 ~~g~~~vw~~fGKhKL~~ISPkKTwEG~iGGll~svl~~~l~~~~~~-~~~~~~~--~-illglliav~s~lGDL~ES~ 338 (385)
+..+-.++++||+.|.+ +.|||+|.|.||...+++...+++..++. ......+ + .-+-....+.|+++-++||+
T Consensus 169 Dt~AdtvGRKfG~~tpk-~aknKSlAGSIgaft~Gvf~c~vy~gyf~s~g~~~l~~s~r~~~~~l~l~~g~vaAlvEsl 246 (269)
T KOG4453|consen 169 DTIADTVGRKFGSTTPK-YAKNKSLAGSIGAFTFGVFICIVYLGYFSSLGPDYLHMSWRETTLQLVLMVGMVAALVESL 246 (269)
T ss_pred hhHHHHHhhhccccCCC-cCCCccccchHHHHHHHHHHHHHHHHHHhccCcchhccccccchHHHHHHHHHHHHHHhcC
Confidence 44455677899998865 88999999999999999999888766653 1101111 1 11112345667788999986
No 11
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=95.79 E-value=0.019 Score=54.48 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=32.4
Q ss_pred hHHHHHhhCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 016646 267 GLPHWTAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKI 308 (385)
Q Consensus 267 ~~~vw~~fGKhKL~~ISPkKTwEG~iGGll~svl~~~l~~~~ 308 (385)
+-+++..+||||. ..++||||||++++++++.++..++..+
T Consensus 130 AsiiG~~~G~~~~-~~~~~KSleGSla~fi~~~l~~~~~~~~ 170 (216)
T COG0170 130 ASIIGKRYGRHKR-ILGNGKSLEGSLAFFIASFLVLLVLYGY 170 (216)
T ss_pred HHHhCcccCcccc-ccCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 3456679999943 5999999999999999998887655433
No 12
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=84.83 E-value=2.3 Score=44.60 Aligned_cols=37 Identities=24% Similarity=0.275 Sum_probs=29.6
Q ss_pred HHHHHhhCCcccccCCCCCCchhhHHHHHHHHHHHHHHH
Q 016646 268 LPHWTAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLS 306 (385)
Q Consensus 268 ~~vw~~fGKhKL~~ISPkKTwEG~iGGll~svl~~~l~~ 306 (385)
.+++.++||+|.++- |||.||.+.+++...++..+.-
T Consensus 427 SiiG~r~G~~RW~~T--kKTlEGT~Afivs~~iv~~ll~ 463 (510)
T KOG2468|consen 427 SIIGKRYGRIRWSGT--KKTLEGTLAFIVSSFIVCLLLL 463 (510)
T ss_pred HHHhhhhcceecCCC--cceeehhhHHHHHHHHHHHHHH
Confidence 456669999998854 9999999999998887765553
No 13
>TIGR01594 holin_lambda phage holin, lambda family. This model represents one of a large number of mutally dissimilar families of phage holins. Holins act against the host cell membrane to allow lytic enzymes of the phage to reach the bacterial cell wall. This family includes the product of the S gene of phage lambda.
Probab=83.04 E-value=3.5 Score=35.08 Aligned_cols=58 Identities=19% Similarity=0.284 Sum_probs=37.4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH--hHHHHHHHHHhhcCCCCC
Q 016646 286 KTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGS--VFGDLTESMIKRDAGVKD 347 (385)
Q Consensus 286 KTwEG~iGGll~svl~~~l~~~~~~~~~~~~~~illglliav~s--~lGDL~ES~iKR~~GVKD 347 (385)
...||++.|+++-.+.. .+. ++++|. ....++|..+++.| .++++..+.+.|+.|++|
T Consensus 48 ~llea~mCg~la~~~~~-~l~-~~g~~~--~~a~~~g~~IGflGvd~ir~~~~~~i~kK~g~~~ 107 (107)
T TIGR01594 48 KLIDALMCAAIALVAAS-ALD-FLGLPT--SLSPFLGGMIGFVGVDKIREFAKRFINKKAGVDD 107 (107)
T ss_pred HHHHHHHHHHHHHHHHH-HHH-HcCCcH--HHHHHHhhheeeccHHHHHHHHHHHHHhhcCCCC
Confidence 34588777766633322 222 233332 23345667777666 499999999999999998
No 14
>PF01940 DUF92: Integral membrane protein DUF92; InterPro: IPR002794 Many members of this family have no known function and are predicted to be integral membrane proteins.; GO: 0016021 integral to membrane
Probab=69.47 E-value=13 Score=35.67 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=37.1
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q 016646 284 PKKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIKRD 342 (385)
Q Consensus 284 PkKTwEG~iGGll~svl~~~l~~~~~~~~~~~~~~illglliav~s~lGDL~ES~iKR~ 342 (385)
=.=|++|...|++++.+++......... +... ..++.+.|.+|.+++|.+==.
T Consensus 149 GgVS~lGt~as~~Ga~~Ia~~~~~~~~~--~~~~----~~~~~~~G~~Gsl~DSlLGAt 201 (226)
T PF01940_consen 149 GGVSLLGTLASLAGALLIALVAFLLGLI--SFPL----VLLIALAGFLGSLLDSLLGAT 201 (226)
T ss_pred CeechHHHHHHHHHHHHHHHHHHHHHcc--chHH----HHHHHHHHHHHHHHHHHhhHH
Confidence 3468999999999999988877655422 2222 133477888899999987433
No 15
>TIGR00297 conserved hypothetical protein TIGR00297.
Probab=56.76 E-value=30 Score=33.52 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=35.4
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHHhhcCCC
Q 016646 285 KKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGV 345 (385)
Q Consensus 285 kKTwEG~iGGll~svl~~~l~~~~~~~~~~~~~~illglliav~s~lGDL~ES~iKR~~GV 345 (385)
.=|+||.+.+++++.+++.... ... ..++ . ..+++.+.|.+|-+++|.+==..+.
T Consensus 155 gVS~~Gt~As~~Ga~~I~~~~~-~~~-~~~~-~---~~~~~~~aG~~Gsl~DSlLGAtlQ~ 209 (237)
T TIGR00297 155 AISVEGTLAGFAGALAIALLGY-LLG-LISF-K---GILFSTLAAFAGTNLDSLLGATLER 209 (237)
T ss_pred cccHHHHHHHHHHHHHHHHHHH-HHh-hcch-H---HHHHHHHHHHHHHHHHHHHhHHHhh
Confidence 4789999999999999885442 222 1111 1 1234567789999999976544443
No 16
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=54.05 E-value=19 Score=37.61 Aligned_cols=46 Identities=22% Similarity=0.340 Sum_probs=34.1
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCC--cchhhhh
Q 016646 314 YLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGH--GGILDRV 362 (385)
Q Consensus 314 ~~~~~illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGH--GGiLDR~ 362 (385)
+++.++++|++.++. -=+..+.+|++.++.|+=..+|-| ||+.-=+
T Consensus 279 ~p~~A~iiGii~g~i---~~~a~~~lk~~l~~DD~ld~f~vHGvgGi~G~i 326 (409)
T COG0004 279 SPWGALIIGLIAGVI---CYFAVKLLKKKLGVDDALDVFGVHGVGGIVGAI 326 (409)
T ss_pred CcHHHHHHHHHHHHH---HHHHHHHHHHhcCCCCcccceeccchhhHHHHH
Confidence 356667777665554 445688999999999999999999 4655433
No 17
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.16 E-value=46 Score=28.65 Aligned_cols=29 Identities=17% Similarity=-0.038 Sum_probs=19.5
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHhc
Q 016646 282 ISPKKTWEGTIVGLGGCIATTVVLSKIFC 310 (385)
Q Consensus 282 ISPkKTwEG~iGGll~svl~~~l~~~~~~ 310 (385)
++|-|=-.=+|+|++.++.++++.-.+++
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~ag 71 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFAG 71 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555555677787777777777776664
No 18
>PF01066 CDP-OH_P_transf: CDP-alcohol phosphatidyltransferase; InterPro: IPR000462 A number of phosphatidyltransferases, which are all involved in phospholipid biosynthesis and that share the property of catalyzing the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond share a conserved sequence region [, ]. These enzymes are proteins of 200 to 400 amino acid residues. The conserved region contains three aspartic acid residues and is located in the N-terminal section of the sequences.; GO: 0016780 phosphotransferase activity, for other substituted phosphate groups, 0008654 phospholipid biosynthetic process, 0016020 membrane
Probab=45.55 E-value=1.6e+02 Score=23.81 Aligned_cols=47 Identities=21% Similarity=0.289 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCcchhhhh-hHHHHHHHH
Q 016646 319 IVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRV-DSYIFTGAL 371 (385)
Q Consensus 319 illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGHGGiLDR~-DSlLfaaP~ 371 (385)
...+.+....+.+-|-+.-.+-|+.|.+.- -|..+|.+ |.+...+..
T Consensus 29 ~~~~~~l~~~~~~~D~~DG~lAR~~~~~S~------~G~~lD~~~D~i~~~~~~ 76 (101)
T PF01066_consen 29 LLLAALLLFLAFLLDGLDGWLARRRNQSSP------FGAYLDSVADRISFVALP 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCc------hHHHHhHHhHHHHHHHHH
Confidence 355667778889999999999999977643 48889988 887777655
No 19
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=40.81 E-value=1.7e+02 Score=24.37 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCC
Q 016646 319 IVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIP 353 (385)
Q Consensus 319 illglliav~s~lGDL~ES~iKR~~GVKDSG~iiP 353 (385)
=+++++++++-.+|=++-|+.-|.|+. +++..|
T Consensus 48 Sii~FI~giil~lG~~i~s~ygr~C~~--s~~~~~ 80 (92)
T PF05767_consen 48 SIICFILGIILTLGIVIFSMYGRYCRP--SSKVID 80 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCC--CCCcCc
Confidence 356677888889999999999999965 444443
No 20
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=36.71 E-value=1.4e+02 Score=22.71 Aligned_cols=20 Identities=15% Similarity=0.061 Sum_probs=10.0
Q ss_pred hhhHHHhHHHHHHHHHHHHH
Q 016646 109 SQQKASQLRKRIGFGLGIGI 128 (385)
Q Consensus 109 ~~~~~s~l~~Riitalvl~~ 128 (385)
++++.++++.=..-++++.+
T Consensus 11 ~~~k~~E~~~flfl~~~l~P 30 (56)
T PF06796_consen 11 KSTKRSELKAFLFLAVVLFP 30 (56)
T ss_pred cchhHHHHHHHHHHHHHHHH
Confidence 34455566655544444433
No 21
>COG4944 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.12 E-value=75 Score=29.97 Aligned_cols=57 Identities=19% Similarity=0.090 Sum_probs=37.8
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 016646 285 KKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIKR 341 (385)
Q Consensus 285 kKTwEG~iGGll~svl~~~l~~~~~~~~~~~~~~illglliav~s~lGDL~ES~iKR 341 (385)
.-|..|+..|++++-+.+.+++.--..+.....+.-.++-+.+.|++|-+..+.+-|
T Consensus 156 rP~lAGfaaGL~aGgi~a~~Ya~hC~e~~~~Fva~WYtlgi~~lgviGalagr~~lr 212 (213)
T COG4944 156 RPTLAGFAAGLAAGGIGATVYAWHCTEDGPLFVATWYTLGILLLGVIGALAGRRLLR 212 (213)
T ss_pred CchHHHHHHHHhcccHHHHhhhhcCCCCccHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 358889999999888877776644321222334455566677778888887766554
No 22
>KOG1440 consensus CDP-diacylglycerol synthase [Lipid transport and metabolism]
Probab=34.09 E-value=1.6e+02 Score=30.98 Aligned_cols=56 Identities=9% Similarity=-0.063 Sum_probs=40.9
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 016646 111 QKASQLRKRIGFGLGIGIFVGGVVLAGGWVFTVCFAAAVFVGAREYFELVRSRGIA 166 (385)
Q Consensus 111 ~~~s~l~~Riitalvl~~lv~~i~~~g~~~f~~l~~~i~~lal~E~~~l~~~~~~~ 166 (385)
++..|+..|.+++++++--+..+.+.|..+...++..+-.....|.....++....
T Consensus 61 ~~~~n~~~R~i~t~~mi~~f~~i~~~g~~~~~~lv~~iQi~~~~Eii~i~~~~~~~ 116 (432)
T KOG1440|consen 61 SRWKNFFRRGILTLAMISGFFLIIYMGHKYLMALVLVIQIKCFKEIIAIGRKVSRE 116 (432)
T ss_pred CCceeeehHHHHHHHHHhccEEEEecCcchhhhhhhhHHHHHHHHHHHHhhccccc
Confidence 34557889999999887655556677777777777777777888988876655443
No 23
>PRK10666 ammonium transporter; Provisional
Probab=32.95 E-value=60 Score=34.13 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=40.2
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCC--cchhhhhhHHHHHHH
Q 016646 314 YLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGH--GGILDRVDSYIFTGA 370 (385)
Q Consensus 314 ~~~~~illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGH--GGiLDR~DSlLfaaP 370 (385)
+++.++++|++.++...++- ..+||..++-|.-..+|=| ||++-=+=.-+|+.+
T Consensus 302 ~p~~A~iiG~vag~v~~~~~---~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~~ 357 (428)
T PRK10666 302 GVGGALIIGVVAGLAGLWGV---TMLKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAAS 357 (428)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCcCccHhhhHhHHHHHHHHHHhhch
Confidence 45778888888888877664 3478889999999999999 566665555555543
No 24
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=30.13 E-value=66 Score=33.56 Aligned_cols=63 Identities=19% Similarity=0.163 Sum_probs=41.8
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCc
Q 016646 282 ISPKKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHG 356 (385)
Q Consensus 282 ISPkKTwEG~iGGll~svl~~~l~~~~~~~~~~~~~~illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGHG 356 (385)
.|+--...|.+.|+++.+. .+. ..+++.++++|++.++...++-- ++|+.++-|.-..+|=||
T Consensus 268 ~~~~~~~nG~LAGLVaITa----~~~----~v~p~~A~iiG~iag~v~~~~~~----~~~~~~iDD~~~~~~vHg 330 (404)
T TIGR03644 268 ADLTMVLNGALAGLVAITA----EPL----TPSPLAATLIGAVGGVIVVFSIV----LLDKLKIDDPVGAISVHG 330 (404)
T ss_pred CCHHHHHHHHHhhhhhhcc----ccC----CCCHHHHHHHHHHHHHHHHHHHH----HHHhCCCCCCcCchHhhh
Confidence 4555555666666554321 111 13467788999988888876653 345699999999999994
No 25
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=30.09 E-value=43 Score=34.83 Aligned_cols=77 Identities=18% Similarity=0.189 Sum_probs=49.5
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCC--cch
Q 016646 281 SISPKKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGH--GGI 358 (385)
Q Consensus 281 ~ISPkKTwEG~iGGll~svl~~~l~~~~~~~~~~~~~~illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGH--GGi 358 (385)
+.|+--...|.+.|+++....+ + ..+++.++++|++.++...+|- ..+||+.++-|.-..+|=| +|+
T Consensus 253 k~~~~~~~nG~LAGLVaita~a-------~-~v~p~~A~viG~iag~~~~~~~---~~l~~~~~iDD~~~~~~vHg~~Gi 321 (403)
T TIGR00836 253 KPTLLGACNGILAGLVAITPGC-------G-VVTPWGAIIIGLVAGVLCYLAV---SKLKKKLKIDDPLDAFAVHGVGGI 321 (403)
T ss_pred CCCHHHHHhhhhhhheeecCCC-------C-CCCHHHHHHHHHHHHHHHHHHH---HHHHHHcCCCCCcccchhhhhhHH
Confidence 4555556666666655432211 1 1346778888888888777665 4478899999999999999 455
Q ss_pred hhhhhHHHHH
Q 016646 359 LDRVDSYIFT 368 (385)
Q Consensus 359 LDR~DSlLfa 368 (385)
+-=+=.-+|+
T Consensus 322 ~G~i~~glfa 331 (403)
T TIGR00836 322 WGLIATGLFA 331 (403)
T ss_pred HHHHHHHHhc
Confidence 5444333333
No 26
>PF10031 DUF2273: Small integral membrane protein (DUF2273); InterPro: IPR018730 Members of this family of hypothetical bacterial proteins have no known function.
Probab=28.65 E-value=1.2e+02 Score=22.39 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHhHHHHH
Q 016646 315 LPSAIVFGFLNFFGSVFGDLT 335 (385)
Q Consensus 315 ~~~~illglliav~s~lGDL~ 335 (385)
++..+++.+++++...+|+-.
T Consensus 29 F~~tl~i~~~~~iG~~iG~~~ 49 (51)
T PF10031_consen 29 FWKTLFILLFAAIGYYIGKYL 49 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 455555556666666677654
No 27
>PLN02469 hydroxyacylglutathione hydrolase
Probab=28.49 E-value=32 Score=33.29 Aligned_cols=36 Identities=8% Similarity=0.078 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHhhcCCCCCCCCCCCCCcchhhhhhH
Q 016646 329 SVFGDLTESMIKRDAGVKDSGSLIPGHGGILDRVDS 364 (385)
Q Consensus 329 s~lGDL~ES~iKR~~GVKDSG~iiPGHGGiLDR~DS 364 (385)
|...++.+|+-|+-....|.-.+.||||..++.+.-
T Consensus 148 g~~~~~~~Sl~~~l~~Lp~~t~vypGH~yt~~nl~F 183 (258)
T PLN02469 148 GTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKNLKF 183 (258)
T ss_pred CCHHHHHHHHHHHHHcCCCCeEEEcCCCCchhHHHH
Confidence 456789999887777788888999999999887644
No 28
>PLN02962 hydroxyacylglutathione hydrolase
Probab=26.50 E-value=32 Score=33.28 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=23.7
Q ss_pred HhHHHHHHHHHhhcCCCCCCCCCCCCCc
Q 016646 329 SVFGDLTESMIKRDAGVKDSGSLIPGHG 356 (385)
Q Consensus 329 s~lGDL~ES~iKR~~GVKDSG~iiPGHG 356 (385)
+-..++.+|.-+|-....|.-.++||||
T Consensus 165 g~~~~l~~Sl~~~l~~L~~~~~i~PGHg 192 (251)
T PLN02962 165 GSSDQLYKSVHSQIFTLPKDTLIYPAHD 192 (251)
T ss_pred CCHHHHHHHHHHHHHcCCCCeEEECCCC
Confidence 4567899998888888888888999999
No 29
>PRK14788 lipoprotein signal peptidase; Provisional
Probab=23.84 E-value=3e+02 Score=25.93 Aligned_cols=37 Identities=14% Similarity=0.358 Sum_probs=27.4
Q ss_pred HHHHHHHHHhHHHHHHHHHh----hcCCCCCCCCCCCCCcc
Q 016646 321 FGFLNFFGSVFGDLTESMIK----RDAGVKDSGSLIPGHGG 357 (385)
Q Consensus 321 lglliav~s~lGDL~ES~iK----R~~GVKDSG~iiPGHGG 357 (385)
+++.+.+.|-+|-++.-... |+.-.-|-.+-+|||||
T Consensus 92 ial~LIlGGAiGNlIDRi~~G~v~~~~~~~~~~~~~~~~~~ 132 (200)
T PRK14788 92 ICISLILAGAIGNIIDSVFYGVIFDNGSYGQIATFFPEGGG 132 (200)
T ss_pred HHHHHHHHHHhhhhHHHHhhccccccccccccccccccccC
Confidence 44555677889999999876 76777777777788843
No 30
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=23.47 E-value=1.9e+02 Score=27.92 Aligned_cols=41 Identities=20% Similarity=0.164 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHH---hHHHHHHHH
Q 016646 295 LGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGS---VFGDLTESM 338 (385)
Q Consensus 295 ll~svl~~~l~~~~~~~~~~~~~~illglliav~s---~lGDL~ES~ 338 (385)
+++.++++++++.+++ +++.++++|+++++.. ++|-.+|..
T Consensus 35 ~l~~~~v~v~ig~l~~---~~~~~~i~gi~~g~l~am~vl~rra~ra 78 (224)
T PF13829_consen 35 FLGPIAVFVLIGLLFG---SWWYWLIIGILLGLLAAMIVLSRRAQRA 78 (224)
T ss_pred HHHHHHHHHHHHHHHc---cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444544443 3444455554433222 466666544
No 31
>COG1836 Predicted membrane protein [Function unknown]
Probab=22.59 E-value=1.9e+02 Score=28.33 Aligned_cols=66 Identities=14% Similarity=0.208 Sum_probs=40.6
Q ss_pred hhCCcc-c----ccCCC----CCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHHhhcC
Q 016646 273 AFGRTQ-L----TSISP----KKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIKRDA 343 (385)
Q Consensus 273 ~fGKhK-L----~~ISP----kKTwEG~iGGll~svl~~~l~~~~~~~~~~~~~~illglliav~s~lGDL~ES~iKR~~ 343 (385)
.+||++ | .++-| .-|++|-..|++++.+++++.......+ .. .-+.+..+|.+|-..+|.+=-..
T Consensus 143 ~~~~~p~lITtfkrV~~Gt~GaVS~~GelAav~Ga~iIal~~~l~~~~~--~~----~v~~vtlaGf~G~~iDSllGAtl 216 (247)
T COG1836 143 AYGKRPRLITTFKRVEPGTSGAVSLVGELAAVAGAFIIALLSYLVGYIS--LG----GVLSVTLAGFAGTNIDSLLGATL 216 (247)
T ss_pred hhCCCeEEEEeeeEcCCCCCCccchhhhHHHHHHHHHHHHHHHHHHhcc--cc----hhHHHHHHHHHhhhHHHHhhHHH
Confidence 677765 3 14444 4789999999999999887654433211 11 11234566777888888764333
Q ss_pred C
Q 016646 344 G 344 (385)
Q Consensus 344 G 344 (385)
+
T Consensus 217 e 217 (247)
T COG1836 217 E 217 (247)
T ss_pred H
Confidence 3
No 32
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=21.75 E-value=1.8e+02 Score=31.56 Aligned_cols=70 Identities=17% Similarity=0.277 Sum_probs=39.2
Q ss_pred HHHHhhCCcccccCCCCCCchhhHHHHHHHHHHHHHHHHHhccCcc-hHHHHHHHHHH-HHHHhHHHHHHHHHhhcCCCC
Q 016646 269 PHWTAFGRTQLTSISPKKTWEGTIVGLGGCIATTVVLSKIFCWPRY-LPSAIVFGFLN-FFGSVFGDLTESMIKRDAGVK 346 (385)
Q Consensus 269 ~vw~~fGKhKL~~ISPkKTwEG~iGGll~svl~~~l~~~~~~~~~~-~~~~illglli-av~s~lGDL~ES~iKR~~GVK 346 (385)
..+..+||-|.-.+| +|++.+.+.++++++.+- .+.+ ....+.+.+.+ ++.=+.|-=|.+.+||+ |.|
T Consensus 20 ~lG~~lG~iki~~~~--------LG~~~gvLfvgl~~G~~g-~~i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~~~-g~~ 89 (562)
T TIGR03802 20 ALGYLIGKIKFGSFQ--------LGGVAGSLIVAVLIGQLG-IQIDPGVKAVFFALFIFAIGYEVGPQFFASLKKD-GLR 89 (562)
T ss_pred HHhHhhcceEEeeee--------cchHHHHHHHHHHHHhcC-CCCChHHHHHHHHHHHHHhhhccCHHHHHHHHhc-cHH
Confidence 344478887775444 454556666677777652 2221 23333333332 33336888888888887 655
Q ss_pred CC
Q 016646 347 DS 348 (385)
Q Consensus 347 DS 348 (385)
..
T Consensus 90 ~~ 91 (562)
T TIGR03802 90 EI 91 (562)
T ss_pred HH
Confidence 43
No 33
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=20.65 E-value=2.5e+02 Score=24.88 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=19.1
Q ss_pred CcchHHHHHHHHHHHHHHh-HHHHH
Q 016646 312 PRYLPSAIVFGFLNFFGSV-FGDLT 335 (385)
Q Consensus 312 ~~~~~~~illglliav~s~-lGDL~ 335 (385)
..++.+.+.+++++.+.+- +||+.
T Consensus 27 ~~sf~~~l~~sl~ltvvaY~iGDl~ 51 (136)
T PF10710_consen 27 GASFGDILLISLVLTVVAYLIGDLF 51 (136)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3557777888888888886 99997
Done!