Query 016646
Match_columns 385
No_of_seqs 172 out of 1352
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 17:05:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b9w_A Ammonium transporter fa 36.6 16 0.00055 36.7 2.5 44 313-356 257-301 (407)
2 2b2h_A AMT-1, ammonium transpo 36.2 17 0.00057 36.4 2.5 39 313-355 267-305 (399)
3 1u7g_A Probable ammonium trans 23.1 26 0.0009 34.8 1.3 39 314-355 280-318 (385)
4 3hd6_A Ammonium transporter RH 20.4 32 0.0011 35.3 1.3 55 314-368 307-364 (490)
5 1kvd_A SMK toxin; halotolerant 19.9 50 0.0017 23.6 1.8 25 281-305 18-42 (63)
6 1xm8_A Glyoxalase II; structur 18.2 32 0.0011 31.3 0.6 29 332-361 147-175 (254)
7 1qh5_A Glyoxalase II, protein 18.0 43 0.0015 30.6 1.5 31 330-360 148-178 (260)
8 3ro2_B Peptide of nuclear mito 17.1 41 0.0014 20.7 0.7 13 75-87 9-21 (28)
9 3hnn_A Putative diflavin flavo 16.5 53 0.0018 29.6 1.7 26 334-360 211-236 (262)
10 2fhx_A SPM-1; metallo-beta-lac 14.6 39 0.0013 29.7 0.2 28 332-361 200-227 (246)
No 1
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=36.62 E-value=16 Score=36.66 Aligned_cols=44 Identities=27% Similarity=0.227 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHHHHHhHHH-HHHHHHhhcCCCCCCCCCCCCCc
Q 016646 313 RYLPSAIVFGFLNFFGSVFGD-LTESMIKRDAGVKDSGSLIPGHG 356 (385)
Q Consensus 313 ~~~~~~illglliav~s~lGD-L~ES~iKR~~GVKDSG~iiPGHG 356 (385)
.+++.++++|++.++...+|- .....+|++.++-|+-..+|=||
T Consensus 257 v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHg 301 (407)
T 3b9w_A 257 VGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHG 301 (407)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecch
Confidence 346778999999999988886 45667889999999999999993
No 2
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=36.25 E-value=17 Score=36.40 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCC
Q 016646 313 RYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGH 355 (385)
Q Consensus 313 ~~~~~~illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGH 355 (385)
.+++.++++|++.++...++- .+|++.++-|.-..+|=|
T Consensus 267 v~p~~A~iiG~iag~i~~~~~----~l~~kl~iDD~l~a~~vH 305 (399)
T 2b2h_A 267 VDVKGAIVIGLVAGIVCYLAM----DFRIKKKIDESLDAWAIH 305 (399)
T ss_dssp CCHHHHHHHHHHHHHHHHHHH----HHHHHTTCCCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH----HHHHHcCCCCCCCceecc
Confidence 346778999999998888886 688999999998888888
No 3
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A
Probab=23.06 E-value=26 Score=34.78 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCC
Q 016646 314 YLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGH 355 (385)
Q Consensus 314 ~~~~~illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGH 355 (385)
+++.++++|++.++...++- ..+|++.++-|.-..+|=|
T Consensus 280 ~p~~A~iiG~iag~i~~~~~---~~l~~~l~iDD~l~a~~vH 318 (385)
T 1u7g_A 280 GVGGALIIGVVAGLAGLWGV---TMLKRLLRVDDPCDVFGVH 318 (385)
T ss_dssp CHHHHHHHHHHHHHHHHHHH---HHHHHHHCSCCGGGHHHHH
T ss_pred CHHHHHHHHhHHHHHHHHHH---HHHHHhCCCCCCCCCEeec
Confidence 46778888888887776664 3377788999987777777
No 4
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=20.41 E-value=32 Score=35.30 Aligned_cols=55 Identities=16% Similarity=0.229 Sum_probs=41.8
Q ss_pred chHHHHHHHHHHHHHHhHHH-HHHHHHhhcCCCCCCCCCCCCC--cchhhhhhHHHHH
Q 016646 314 YLPSAIVFGFLNFFGSVFGD-LTESMIKRDAGVKDSGSLIPGH--GGILDRVDSYIFT 368 (385)
Q Consensus 314 ~~~~~illglliav~s~lGD-L~ES~iKR~~GVKDSG~iiPGH--GGiLDR~DSlLfa 368 (385)
+++.++++|++.++.+.+|- .....+|++.++-|.-..++=| ||++-=+=.-+|+
T Consensus 307 ~P~~AliIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa 364 (490)
T 3hd6_A 307 MPYGALIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTA 364 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccchHHhhHHHHHHHHHHHHHh
Confidence 46788999999999998884 3445788999999999999988 5666554444443
No 5
>1kvd_A SMK toxin; halotolerant yeast; 1.80A {Pichia farinosa} SCOP: d.70.1.2 PDB: 1kve_A
Probab=19.85 E-value=50 Score=23.56 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=20.9
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHH
Q 016646 281 SISPKKTWEGTIVGLGGCIATTVVL 305 (385)
Q Consensus 281 ~ISPkKTwEG~iGGll~svl~~~l~ 305 (385)
--|-.-|.-|..||+++++.++++.
T Consensus 18 gcsgaatfgglaggivgciaagila 42 (63)
T 1kvd_A 18 GCSGAATFGGLAGGIVGCIAAGILA 42 (63)
T ss_dssp CCSSCCCCTTCCSHHHHHHHHHHHH
T ss_pred CCccchhcccccchHHHHHHHHHHH
Confidence 3677889999999999998877654
No 6
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A
Probab=18.24 E-value=32 Score=31.34 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=20.8
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCcchhhh
Q 016646 332 GDLTESMIKRDAGVKDSGSLIPGHGGILDR 361 (385)
Q Consensus 332 GDL~ES~iKR~~GVKDSG~iiPGHGGiLDR 361 (385)
.++.+|. +|-....|...++||||...+.
T Consensus 147 ~~~~~Sl-~~l~~l~~~~~v~pgHg~~~~~ 175 (254)
T 1xm8_A 147 KQMLASL-QKITSLPDDTSIYCGHEYTLSN 175 (254)
T ss_dssp HHHHHHH-HHHHTSCTTCEEEESBCCHHHH
T ss_pred HHHHHHH-HHHHccCCCcEEEeCCcchhcc
Confidence 4566665 6666667767899999998754
No 7
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A*
Probab=18.03 E-value=43 Score=30.60 Aligned_cols=31 Identities=6% Similarity=0.166 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCCCCCCCcchhh
Q 016646 330 VFGDLTESMIKRDAGVKDSGSLIPGHGGILD 360 (385)
Q Consensus 330 ~lGDL~ES~iKR~~GVKDSG~iiPGHGGiLD 360 (385)
...++.+|.-+|-....|.-.++||||+..+
T Consensus 148 ~~~~~~~Sl~~~l~~l~~~~~v~pgHg~~~~ 178 (260)
T 1qh5_A 148 TADEMCKALLEVLGRLPPDTRVYCGHEYTIN 178 (260)
T ss_dssp CHHHHHHHHHTTTTTSCTTCEEEESBCCHHH
T ss_pred CHHHHHHHHHHHHHcCCCCeEEEcCCCchhc
Confidence 4567777776776777777678999998765
No 8
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=17.14 E-value=41 Score=20.68 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=9.0
Q ss_pred hhcCCCCCCCCcc
Q 016646 75 ARAEPDHLDDGNL 87 (385)
Q Consensus 75 ~~~~~~~~~~~~~ 87 (385)
-+-||||++|=+.
T Consensus 9 cqdepeqlddw~r 21 (28)
T 3ro2_B 9 CQDEPEQLDDWNR 21 (28)
T ss_dssp CCCCCCCCCCTTT
T ss_pred ccCCcccchhHHH
Confidence 3679999776543
No 9
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural GE consortium, NESG, NSR435A, DFA5, electron transport; 1.80A {Nostoc SP} PDB: 4fek_A
Probab=16.49 E-value=53 Score=29.59 Aligned_cols=26 Identities=15% Similarity=0.311 Sum_probs=18.9
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCcchhh
Q 016646 334 LTESMIKRDAGVKDSGSLIPGHGGILD 360 (385)
Q Consensus 334 L~ES~iKR~~GVKDSG~iiPGHGGiLD 360 (385)
-....++|-... |--.++||||.+++
T Consensus 211 ~~~~sl~~l~~L-~~~~i~PgHG~~~~ 236 (262)
T 3hnn_A 211 HVEAALEKISDL-QVRLYAVGHGPLVR 236 (262)
T ss_dssp HHHHHHHHHTTS-CCSEEEESSSSEES
T ss_pred HHHHHHHHHhCC-CCCEEECCCCcccc
Confidence 344556776665 45789999999986
No 10
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=14.58 E-value=39 Score=29.73 Aligned_cols=28 Identities=29% Similarity=0.380 Sum_probs=18.5
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCcchhhh
Q 016646 332 GDLTESMIKRDAGVKDSGSLIPGHGGILDR 361 (385)
Q Consensus 332 GDL~ES~iKR~~GVKDSG~iiPGHGGiLDR 361 (385)
.+..+| ++|-... |.-.++||||+..++
T Consensus 200 ~~~~~s-l~~l~~l-~~~~i~pgHg~~~~~ 227 (246)
T 2fhx_A 200 KAWPDS-ARRLKKF-DAKIVIPGHGEWGGP 227 (246)
T ss_dssp TTHHHH-HHHGGGS-CCSEEEESBSCCBST
T ss_pred HHHHHH-HHHHHhC-CCCEEECCCCCcCCH
Confidence 344444 3444444 667899999999875
Done!