Query 016646
Match_columns 385
No_of_seqs 172 out of 1352
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 17:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016646.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/016646hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2p97a1 d.157.1.12 (A:1-200) H 43.1 4.1 0.0003 33.7 1.6 32 336-367 161-197 (200)
2 d1u7ga_ f.44.1.1 (A:) Ammonium 31.1 7 0.00051 36.4 1.2 64 282-356 254-317 (383)
3 d1qh5a_ d.157.1.2 (A:) Glyoxal 25.0 10 0.00076 33.0 1.1 31 329-359 147-177 (260)
4 d1vmea2 d.157.1.3 (A:1-250) RO 23.7 14 0.001 30.6 1.8 33 334-367 208-241 (250)
5 d2q0ia1 d.157.1.14 (A:1-298) Q 22.8 7.9 0.00057 33.5 -0.2 22 339-360 205-226 (298)
6 d2j7za1 d.9.1.1 (A:1-67) Strom 20.9 17 0.0013 25.2 1.3 15 15-31 2-16 (67)
7 d2gmna1 d.157.1.1 (A:29-292) Z 18.9 17 0.0012 30.8 1.2 30 332-363 193-222 (264)
8 d1m2xa_ d.157.1.1 (A:) Zn meta 17.8 11 0.0008 30.5 -0.3 16 346-361 187-202 (219)
9 d1mqoa_ d.157.1.1 (A:) Zn meta 17.4 23 0.0017 29.1 1.7 23 336-361 188-210 (221)
10 d1ycga2 d.157.1.3 (A:2-250) Ni 16.5 17 0.0012 30.2 0.6 25 335-359 206-231 (249)
No 1
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]}
Probab=43.07 E-value=4.1 Score=33.74 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=24.0
Q ss_pred HHHHhhcCCCCCCCCCCCCCcch-----hhhhhHHHH
Q 016646 336 ESMIKRDAGVKDSGSLIPGHGGI-----LDRVDSYIF 367 (385)
Q Consensus 336 ES~iKR~~GVKDSG~iiPGHGGi-----LDR~DSlLf 367 (385)
.+.+||-...+|.-.++||||.. -+|++.++-
T Consensus 161 ~~sl~rl~~l~~~~~i~pgHG~~~~~~~~~rl~~l~~ 197 (200)
T d2p97a1 161 VASVRRLAALEKVEAVLVGDGWSVFRDGRDRLKELVA 197 (200)
T ss_dssp HHHHHHHHTCTTCCEEEESBBCCBCSCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcEEECCCCchHhcCHHHHHHHHHH
Confidence 34577777889999999999954 457777653
No 2
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=31.12 E-value=7 Score=36.44 Aligned_cols=64 Identities=25% Similarity=0.316 Sum_probs=41.2
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCCCCCCCCCCCc
Q 016646 282 ISPKKTWEGTIVGLGGCIATTVVLSKIFCWPRYLPSAIVFGFLNFFGSVFGDLTESMIKRDAGVKDSGSLIPGHG 356 (385)
Q Consensus 282 ISPkKTwEG~iGGll~svl~~~l~~~~~~~~~~~~~~illglliav~s~lGDL~ES~iKR~~GVKDSG~iiPGHG 356 (385)
.|+-.+..|.++|+++... .+ + ..+++.++++|++.++...++ -..+||+.++-|--..+|=||
T Consensus 254 ~~~~~~~nG~LaGLVaita----~~---~-~v~p~~A~~iG~i~g~i~~~~---~~~l~~~~~iDD~~~~~~vHg 317 (383)
T d1u7ga_ 254 PSLLGACSGAIAGLVGVTP----AC---G-YIGVGGALIIGVVAGLAGLWG---VTMLKRLLRVDDPCDVFGVHG 317 (383)
T ss_dssp CCHHHHHHHHHHHHHHHTT----TT---T-TSCHHHHHHHHHHHHHHHHHH---HHHHHHHHCSCCGGGHHHHHH
T ss_pred CCHHHHHHHhhhhhhhccc----Cc---c-ccchhhHHHHHhhccHHHHHH---HHHHHhhcccccccceEeehh
Confidence 4444555666666554221 11 1 234677788888877777666 346788888999988888884
No 3
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.00 E-value=10 Score=33.00 Aligned_cols=31 Identities=6% Similarity=0.147 Sum_probs=26.9
Q ss_pred HhHHHHHHHHHhhcCCCCCCCCCCCCCcchh
Q 016646 329 SVFGDLTESMIKRDAGVKDSGSLIPGHGGIL 359 (385)
Q Consensus 329 s~lGDL~ES~iKR~~GVKDSG~iiPGHGGiL 359 (385)
|...++.+|..||-....|.-.+.||||-..
T Consensus 147 g~~~~l~~si~~~l~~Lp~~t~vypGH~y~~ 177 (260)
T d1qh5a_ 147 GTADEMCKALLEVLGRLPPDTRVYCGHEYTI 177 (260)
T ss_dssp CCHHHHHHHHHTTTTTSCTTCEEEESBCCHH
T ss_pred CchHHhhhhhhhHHhcCCcccEEeeccccCC
Confidence 3456889999999999999999999998764
No 4
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=23.71 E-value=14 Score=30.63 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=20.6
Q ss_pred HHHHHHhhcCCCCCCCCCCCCCcchh-hhhhHHHH
Q 016646 334 LTESMIKRDAGVKDSGSLIPGHGGIL-DRVDSYIF 367 (385)
Q Consensus 334 L~ES~iKR~~GVKDSG~iiPGHGGiL-DR~DSlLf 367 (385)
-....+||-... |-..++||||-++ +.++.++=
T Consensus 208 ~~~~sl~~l~~l-~~~~I~PGHGpi~~~~~~~~i~ 241 (250)
T d1vmea2 208 YILEGAEKLSSL-KIKALLPGHGLIWKKDPQRLLN 241 (250)
T ss_dssp HHHHHHHHHHTS-CCSEEEESSSCBBSSCHHHHHH
T ss_pred HHHHHHHHHHCC-CCCEEECCCChhHhcCHHHHHH
Confidence 334456664444 4568999999887 34555543
No 5
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.77 E-value=7.9 Score=33.52 Aligned_cols=22 Identities=41% Similarity=0.702 Sum_probs=15.8
Q ss_pred HhhcCCCCCCCCCCCCCcchhh
Q 016646 339 IKRDAGVKDSGSLIPGHGGILD 360 (385)
Q Consensus 339 iKR~~GVKDSG~iiPGHGGiLD 360 (385)
++|-...+|--.++||||++.+
T Consensus 205 l~~l~~l~~~~~i~PgHG~~~~ 226 (298)
T d2q0ia1 205 LERLQRLPTLLQLIPGHGGLLR 226 (298)
T ss_dssp HHHHHTSSCCSEEEESSSCEEE
T ss_pred HHHHHCCCCCCEEECCCCCccC
Confidence 4555555565678999999874
No 6
>d2j7za1 d.9.1.1 (A:1-67) Stromal cell-derived factor-1 (SDF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.90 E-value=17 Score=25.19 Aligned_cols=15 Identities=33% Similarity=0.751 Sum_probs=10.3
Q ss_pred ccccccccCCCCCCCCC
Q 016646 15 SLPLTSLNACPCRPSSN 31 (385)
Q Consensus 15 ~~~~~~~~~~~~~~~~~ 31 (385)
|+|+.-+ ||||++-+
T Consensus 2 PiSl~~R--c~cr~~~s 16 (67)
T d2j7za1 2 PVSLSYR--CPCRFFES 16 (67)
T ss_dssp CTTTCCS--CSCSSCBS
T ss_pred Ccchhhc--cchhhhhc
Confidence 4556655 79998765
No 7
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]}
Probab=18.90 E-value=17 Score=30.78 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=18.6
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCCCcchhhhhh
Q 016646 332 GDLTESMIKRDAGVKDSGSLIPGHGGILDRVD 363 (385)
Q Consensus 332 GDL~ES~iKR~~GVKDSG~iiPGHGGiLDR~D 363 (385)
.|..+| +||-...+ --.++||||+..+.-+
T Consensus 193 ~~~~~s-l~~l~~l~-~d~v~pgHg~~~~~~~ 222 (264)
T d2gmna1 193 DDYRAT-FAKAKAMK-IDVLLGPHPEVYGMQA 222 (264)
T ss_dssp HHHHHH-HHHHHHSC-CSEEECSSGGGTTHHH
T ss_pred HHHHHH-HHHHHcCC-CCEEECCCCCccchHH
Confidence 344444 35544443 4589999999876544
No 8
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Probab=17.84 E-value=11 Score=30.51 Aligned_cols=16 Identities=19% Similarity=0.391 Sum_probs=12.7
Q ss_pred CCCCCCCCCCcchhhh
Q 016646 346 KDSGSLIPGHGGILDR 361 (385)
Q Consensus 346 KDSG~iiPGHGGiLDR 361 (385)
.|.-.++||||.+.|+
T Consensus 187 ~~~~~i~pgHg~~~~~ 202 (219)
T d1m2xa_ 187 SGAQYVVAGHDDWKDQ 202 (219)
T ss_dssp TTCSEEEESBSCCCST
T ss_pred CCCcEEECCCCCccCh
Confidence 3566799999998765
No 9
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]}
Probab=17.42 E-value=23 Score=29.12 Aligned_cols=23 Identities=35% Similarity=0.758 Sum_probs=16.3
Q ss_pred HHHHhhcCCCCCCCCCCCCCcchhhh
Q 016646 336 ESMIKRDAGVKDSGSLIPGHGGILDR 361 (385)
Q Consensus 336 ES~iKR~~GVKDSG~iiPGHGGiLDR 361 (385)
+.+.+|.. |-..++||||.+.||
T Consensus 188 ~~l~~~~~---~~~~viPgHG~~~~~ 210 (221)
T d1mqoa_ 188 ENVLKRYR---NINAVVPGHGEVGDK 210 (221)
T ss_dssp HHHHHHCC---SCSEEEESSSCCBCT
T ss_pred HHHHhhCC---CCCEEEeCCCCCCCH
Confidence 44455543 455799999999886
No 10
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]}
Probab=16.47 E-value=17 Score=30.19 Aligned_cols=25 Identities=16% Similarity=0.233 Sum_probs=14.8
Q ss_pred HHHHHhhcCCC-CCCCCCCCCCcchh
Q 016646 335 TESMIKRDAGV-KDSGSLIPGHGGIL 359 (385)
Q Consensus 335 ~ES~iKR~~GV-KDSG~iiPGHGGiL 359 (385)
+++.+||-..+ -|-..++||||.++
T Consensus 206 ~~~~l~~l~~l~l~~~~i~PgHGpv~ 231 (249)
T d1ycga2 206 ITKKLDEIQKINLAIKTIAPSHGIIW 231 (249)
T ss_dssp HHHHHHHHHHTTCCCSEEEESSSCBB
T ss_pred HHHHHHHHHccCCCCCEEEeCCCchH
Confidence 34445543222 22347899999998
Done!