BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016647
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 456 bits (1172), Expect = e-128, Method: Compositional matrix adjust.
Identities = 238/336 (70%), Positives = 252/336 (75%), Gaps = 51/336 (15%)
Query: 101 SAFVVTPQRKLQTDELATVRLFQENTPSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWD 160
+AFVV+ +KLQTDELATVRLFQENTPSVV ITNLA RQDAFTLDVLEVPQGSGSGFVWD
Sbjct: 2 AAFVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWD 61
Query: 161 SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGV 220
+GH+VTNYHVIRGASD+RVT ADQ+ +DAK+VGFDQDKDVAVLRIDAPK+KLRPIP+GV
Sbjct: 62 KQGHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGV 121
Query: 221 SADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINXXXXX 280
SADLLVGQKV+AIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAIN
Sbjct: 122 SADLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSG 181
Query: 281 XXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDT------------------------- 315
TAIYSPSGASSGVGFSIPVDT
Sbjct: 182 GPLLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGIKFAP 241
Query: 316 --------------------------GLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLY 349
GL STKRD YGRL+LGDIITSVNG KVSNGSDLY
Sbjct: 242 DQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLY 301
Query: 350 RILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDET 385
RILDQCKVGDEV VEVLRGD KEKI V LEPKPDE+
Sbjct: 302 RILDQCKVGDEVTVEVLRGDHKEKISVTLEPKPDES 337
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 133/272 (48%), Gaps = 50/272 (18%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK+VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I + S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDT----------------- 315
AIN TAI +P G + G+GF+IP +
Sbjct: 204 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRG 263
Query: 316 --GLLST--------------KRDAYGRLIL------------GDIITSVNGKKVSNGSD 347
G++ T +R A+ +L GD+ITS+NGK +S+ +
Sbjct: 264 ELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA 323
Query: 348 LYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 379
L + VG ++ + +LR ++ + ++L+
Sbjct: 324 LRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 133/272 (48%), Gaps = 50/272 (18%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK+VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I + S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDT----------------- 315
AIN TAI +P G + G+GF+IP +
Sbjct: 204 AINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRG 263
Query: 316 --GLLST--------------KRDAYGRLIL------------GDIITSVNGKKVSNGSD 347
G++ T +R A+ +L GD+ITS+NGK +S+ +
Sbjct: 264 ELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA 323
Query: 348 LYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 379
L + VG ++ + +LR ++ + ++L+
Sbjct: 324 LRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 133/272 (48%), Gaps = 50/272 (18%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK+VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I + S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDT----------------- 315
AIN TAI +P G + G+GF+IP +
Sbjct: 204 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRG 263
Query: 316 --GLLST--------------KRDAYGRLIL------------GDIITSVNGKKVSNGSD 347
G++ T +R A+ +L GD+ITS+NGK +S+ +
Sbjct: 264 ELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA 323
Query: 348 LYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 379
L + VG ++ + +LR ++ + ++L+
Sbjct: 324 LRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 133/272 (48%), Gaps = 50/272 (18%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK+VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I + S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDT----------------- 315
AIN TAI +P G + G+GF+IP +
Sbjct: 204 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRG 263
Query: 316 --GLLST--------------KRDAYGRLIL------------GDIITSVNGKKVSNGSD 347
G++ T +R A+ +L GD+ITS+NGK +S+ +
Sbjct: 264 ELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA 323
Query: 348 LYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 379
L + VG ++ + +LR ++ + ++L+
Sbjct: 324 LRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 133/272 (48%), Gaps = 50/272 (18%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK+VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I + S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDT----------------- 315
AIN TAI +P G + G+GF+IP +
Sbjct: 204 AINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKRG 263
Query: 316 --GLLST--------------KRDAYGRLIL------------GDIITSVNGKKVSNGSD 347
G++ T +R A+ +L GD+ITS+NGK +S+ +
Sbjct: 264 ELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA 323
Query: 348 LYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 379
L + VG ++ + +LR ++ + ++L+
Sbjct: 324 LRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 115 bits (287), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 92/162 (56%), Gaps = 1/162 (0%)
Query: 154 GSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKL 213
GSGF++D +G+++TNYHV+ GA +I VT D S YDA+ +G D++ D+AV++I A K
Sbjct: 58 GSGFIFDPEGYILTNYHVVGGADNITVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKF 117
Query: 214 RPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAA 273
+ G S + +G+ AIGNP G HT+T GV+S R I +IQTDAA
Sbjct: 118 PYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYVGLIQTDAA 177
Query: 274 INXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDT 315
IN TAI +P A + +GF+IP++T
Sbjct: 178 INPGNSGGPLLNIHGEVIGINTAIVNPQEAVN-LGFAIPINT 218
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 130/275 (47%), Gaps = 50/275 (18%)
Query: 151 QGSGSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAP 209
+G GSG + + SKG+V+TN HVI A I + D +DAK++G D D+A+L+I P
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNP 121
Query: 210 KDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQ 269
KL I I S L VG A+GNPFGL T T+G++S L R S +++ IQ
Sbjct: 122 S-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR---SGLNLEGLENFIQ 177
Query: 270 TDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIP----------------V 313
TDA+IN TAI +P G S G+GF+IP +
Sbjct: 178 TDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEI 237
Query: 314 DTGLLSTK-----------------RDAYGRLIL------------GDIITSVNGKKVSN 344
GLL K R A+ +L GDIITS+NGK +++
Sbjct: 238 KRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNS 297
Query: 345 GSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 379
++L + + G +V + +LR + ++ V L+
Sbjct: 298 FAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLD 332
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 130/275 (47%), Gaps = 50/275 (18%)
Query: 151 QGSGSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAP 209
+G GSG + + SKG+V+TN HVI A I + D +DAK++G D D+A+L+I P
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNP 121
Query: 210 KDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQ 269
KL I I S L VG A+GNPFGL T T+G++S L R S +++ IQ
Sbjct: 122 S-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR---SGLNLEGLENFIQ 177
Query: 270 TDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIP----------------V 313
TDA+IN TAI +P G S G+GF+IP +
Sbjct: 178 TDASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEI 237
Query: 314 DTGLLSTK-----------------RDAYGRLIL------------GDIITSVNGKKVSN 344
GLL K R A+ +L GDIITS+NGK +++
Sbjct: 238 KRGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNS 297
Query: 345 GSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 379
++L + + G +V + +LR + ++ V L+
Sbjct: 298 FAELRSRIATTEPGTKVKLGLLRNGKPLEVEVTLD 332
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 130/272 (47%), Gaps = 50/272 (18%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDT----------------- 315
AIN TAI +P G + G+GF+IP +
Sbjct: 204 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG 263
Query: 316 --GLLST--------------KRDAYGRLIL------------GDIITSVNGKKVSNGSD 347
G+ T +R A+ +L GD+ITS+NGK +S+ +
Sbjct: 264 ELGIXGTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA 323
Query: 348 LYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 379
L + VG ++ + +LR ++ + ++L+
Sbjct: 324 LRAQVGTXPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 130/272 (47%), Gaps = 50/272 (18%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDT----------------- 315
AIN TAI +P G + G+GF+IP +
Sbjct: 204 AINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG 263
Query: 316 --GLLST--------------KRDAYGRLIL------------GDIITSVNGKKVSNGSD 347
G+ T +R A+ +L GD+ITS+NGK +S+ +
Sbjct: 264 ELGIXGTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA 323
Query: 348 LYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 379
L + VG ++ + +LR ++ + ++L+
Sbjct: 324 LRAQVGTXPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 130/272 (47%), Gaps = 50/272 (18%)
Query: 154 GSGFVWDS-KGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D+ KG+VVTN HV+ A+ I+V +D +DAK VG D D+A+++I PK+
Sbjct: 88 GSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPKN- 146
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDA 272
L I S L VG AIGNPFGL T+T+G++S L R S ++ IQTDA
Sbjct: 147 LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGR---SGLNAENYENFIQTDA 203
Query: 273 AINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVDT----------------- 315
AIN TAI +P G + G+GF+IP +
Sbjct: 204 AINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKRG 263
Query: 316 --GLLST--------------KRDAYGRLIL------------GDIITSVNGKKVSNGSD 347
G+ T +R A+ +L GD+ITS+NGK +S+ +
Sbjct: 264 ELGIXGTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAA 323
Query: 348 LYRILDQCKVGDEVIVEVLRGDQKEKIPVKLE 379
L + VG ++ + +LR ++ + ++L+
Sbjct: 324 LRAQVGTXPVGSKLTLGLLRDGKQVNVNLELQ 355
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 89/163 (54%), Gaps = 5/163 (3%)
Query: 151 QGSGSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAP 209
+G GSG + + SKG+V+TN HVI A I + D +DAK++G D D+A+L+I P
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNP 121
Query: 210 KDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQ 269
KL I I S L VG A+GNPFGL T T+G++S L R S +++ IQ
Sbjct: 122 S-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGR---SGLNLEGLENFIQ 177
Query: 270 TDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIP 312
TDA+IN TAI +P G S G+GF+IP
Sbjct: 178 TDASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIP 220
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 154 GSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D + G ++TN HVIR AS I VT D A+++G D + D+AVL+IDA
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA--KN 136
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLD-----HTLTTGVISGLRREISSAATGRPIQDV 267
L+ + IG S L VG V AIGNPFGL+ + T G++S L+R S +++
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR---SDLNIEGVENF 193
Query: 268 IQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVD 314
IQTDAAIN TAI SP G + G+GF+IP++
Sbjct: 194 IQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPIN 240
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 154 GSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D + G ++TN HVIR AS I VT D A+++G D + D+AVL+IDA
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA--KN 136
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLD-----HTLTTGVISGLRREISSAATGRPIQDV 267
L+ + IG S L VG V AIGNPFGL+ + T G++S L+R S +++
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR---SDLNIEGVENF 193
Query: 268 IQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVD 314
IQTDAAIN TAI SP G + G+GF+IP++
Sbjct: 194 IQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPIN 240
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/167 (40%), Positives = 93/167 (55%), Gaps = 11/167 (6%)
Query: 154 GSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D + G ++TN HVIR AS I VT D A+++G D + D+AVL+IDA
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA--KN 136
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLD-----HTLTTGVISGLRREISSAATGRPIQDV 267
L+ + IG S L VG V AIGNPFGL+ + T G++S L+R S +++
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR---SDLNIEGVENF 193
Query: 268 IQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVD 314
IQTDAAIN TAI SP G + G+GF+IP++
Sbjct: 194 IQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPIN 240
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/167 (40%), Positives = 92/167 (55%), Gaps = 11/167 (6%)
Query: 154 GSGFVWD-SKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRIDAPKDK 212
GSG + D + G ++TN HVIR AS I VT D A+++G D + D+AVL+IDA
Sbjct: 79 GSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDA--KN 136
Query: 213 LRPIPIGVSADLLVGQKVYAIGNPFGLD-----HTLTTGVISGLRREISSAATGRPIQDV 267
L+ + IG S L VG V AIGNPFGL+ + T G++S L+R S +++
Sbjct: 137 LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKR---SDLNIEGVENF 193
Query: 268 IQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSGASSGVGFSIPVD 314
IQTDAAI TAI SP G + G+GF+IP++
Sbjct: 194 IQTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPIN 240
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 100/200 (50%), Gaps = 26/200 (13%)
Query: 154 GSGFVWDSKGHVVTNYHVIRGASD---------IRVTFADQSAYDAKIVGFDQDKDVAVL 204
GSG + ++G ++TN HVI A+ VTF+D +VG D D+AV+
Sbjct: 33 GSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPFTVVGADPTSDIAVV 92
Query: 205 RIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISS---AATG 261
R+ L PI +G S+DL VGQ V AIG+P GL+ T+TTG++S L R +S+ A
Sbjct: 93 RVQG-VSGLTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALNRPVSTTGEAGNQ 151
Query: 262 RPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYS-------PSGASSGVGFSIPVD 314
+ D IQTDAAIN +AI + S G+GF+IPVD
Sbjct: 152 NTVLDAIQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPVD 211
Query: 315 TG------LLSTKRDAYGRL 328
L+ST + ++ L
Sbjct: 212 QAKRIADELISTGKASHASL 231
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 113/226 (50%), Gaps = 23/226 (10%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 15 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 71
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 72 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 130
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 131 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 187
Query: 304 SSGVGFSIPVDTGLLSTK------RDAYGRLILGDIITSVNGKKVS 343
G+GF+IP L+TK RD GR+I G I + G++++
Sbjct: 188 PEGIGFAIPFQ---LATKIMDKLIRD--GRVIRGYI--GIGGREIA 226
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 114/226 (50%), Gaps = 23/226 (10%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLQTDASINPGNXGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIPVDTGLLSTK------RDAYGRLILGDIITSVNGKKVS 343
G+GF+IP L+TK RD GR+I G I + G++++
Sbjct: 214 PEGIGFAIPFQ---LATKIMDKLIRD--GRVIRGYI--GIGGREIA 252
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 148 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRID 207
EVP SGSGF+ G +VTN HV+ ++V + + Y+AKI D+ D+A+++ID
Sbjct: 42 EVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKID 101
Query: 208 APKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDV 267
+ KL + +G S++L G+ V AIG+PF L +T+TTG++S +R D
Sbjct: 102 H-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDY 160
Query: 268 IQTDAAIN 275
IQTDA IN
Sbjct: 161 IQTDAIIN 168
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 148 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRID 207
EVP SGSGF+ G +VTN HV+ ++V + + Y+AKI D+ D+A+++ID
Sbjct: 59 EVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKID 118
Query: 208 APKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDV 267
+ KL + +G S++L G+ V AIG+PF L +T+TTG++S +R D
Sbjct: 119 H-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDY 177
Query: 268 IQTDAAIN 275
IQTDA IN
Sbjct: 178 IQTDAIIN 185
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 148 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRID 207
EVP SGSGF+ G +VTN HV+ ++V + + Y+AKI D+ D+A+++ID
Sbjct: 42 EVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKID 101
Query: 208 APKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDV 267
+ KL + +G S++L G+ V AIG+PF L +T+TTG++S +R D
Sbjct: 102 H-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDY 160
Query: 268 IQTDAAIN 275
IQTDA IN
Sbjct: 161 IQTDAIIN 168
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 95/189 (50%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 43 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 99
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 100 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 158
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 159 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 215
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 216 PEGIGFAIP 224
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 148 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRID 207
EVP SGSGF+ G +VTN HV+ ++V + + Y+AKI D+ D+A+++ID
Sbjct: 42 EVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKID 101
Query: 208 APKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDV 267
+ KL + +G S++L G+ V AIG+PF L +T+TTG++S +R D
Sbjct: 102 H-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDY 160
Query: 268 IQTDAAIN 275
IQTDA IN
Sbjct: 161 IQTDAIIN 168
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 96/189 (50%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 43 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 99
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 100 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 158
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 159 IISATGR-IGLNPTGR--QNFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGET 215
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 216 PEGIGFAIP 224
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Query: 148 EVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAVLRID 207
EVP SGSGF+ G +VTN HV+ ++V + + Y+AKI D+ D+A+++ID
Sbjct: 59 EVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKID 118
Query: 208 APKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDV 267
+ KL + +G S++L G+ V AIG+PF L +T+TTG++S +R D
Sbjct: 119 H-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQNTVTTGIVSTTQRGGKELGLRNSDMDY 177
Query: 268 IQTDAAIN 275
IQTDA IN
Sbjct: 178 IQTDAIIN 185
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 95/189 (50%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 31 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 87
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 88 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 146
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 147 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 203
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 204 PEGIGFAIP 212
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 96/189 (50%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 214 PEGIGFAIP 222
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 95/189 (50%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 214 PEGIGFAIP 222
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/226 (34%), Positives = 114/226 (50%), Gaps = 23/226 (10%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 15 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIXDQRGYIITNKHVINDADQIIVALQDGR 71
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 72 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 130
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 131 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGET 187
Query: 304 SSGVGFSIPVDTGLLSTK------RDAYGRLILGDIITSVNGKKVS 343
G+GF+IP L+TK RD GR+I G I + G++++
Sbjct: 188 PEGIGFAIPFQ---LATKIXDKLIRD--GRVIRGYI--GIGGREIA 226
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 95/189 (50%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 15 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 71
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 72 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 130
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 131 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 187
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 188 PEGIGFAIP 196
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 96/189 (50%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 43 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIXDQRGYIITNKHVINDADQIIVALQDGR 99
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 100 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 158
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 159 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGET 215
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 216 PEGIGFAIP 224
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 111/226 (49%), Gaps = 23/226 (10%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 20 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 76
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL I A L IPI +G V AIGNP+ L T+T G
Sbjct: 77 VFEALLVGSDSLTDLAVLIIKA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 135
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 136 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 192
Query: 304 SSGVGFSIPVDTGLLSTK------RDAYGRLILGDIITSVNGKKVS 343
G+GF+IP L+TK RD GR+I G I + G++++
Sbjct: 193 PEGIGFAIPFQ---LATKIMDKLIRD--GRVIRGYI--GIGGREIA 231
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L +T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQVITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 214 PEGIGFAIP 222
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 94/189 (49%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPANLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 214 PEGIGFAIP 222
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 43 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 99
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 100 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 158
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS I TGR Q+ +QTDA+IN T + S
Sbjct: 159 IISA-TGAIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 215
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 216 PEGIGFAIP 224
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 43 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 99
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 100 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 158
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ + TDA+IN T + S
Sbjct: 159 IISATGR-IGLNPTGR--QNFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 215
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 216 PEGIGFAIP 224
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 94/189 (49%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPANLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 214 PEGIGFAIP 222
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS I TGR Q+ +QTDA+IN T + S
Sbjct: 157 IISAT-GAIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 214 PEGIGFAIP 222
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 10/189 (5%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
P+VVN+ N ++ + LE+ + GSG + D +G+++TN HVI A I V D
Sbjct: 41 PAVVNVYNRGLNTNSH--NQLEI-RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGR 97
Query: 187 AYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLTTG 246
++A +VG D D+AVL+I+A L IPI +G V AIGNP+ L T+T G
Sbjct: 98 VFEALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQG 156
Query: 247 VISGLRREISSAATGRPIQDVIQTDAAINXXXXXXXXXXXXXXXXXXXTAIYSPSG---A 303
+IS R I TGR Q+ + TDA+IN T + S
Sbjct: 157 IISATGR-IGLNPTGR--QNFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGET 213
Query: 304 SSGVGFSIP 312
G+GF+IP
Sbjct: 214 PEGIGFAIP 222
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 84/155 (54%), Gaps = 5/155 (3%)
Query: 121 LFQENTPSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRV 180
+ ++ P+VV I L D EVP +GSGFV + G +VTN HV+ +RV
Sbjct: 20 VVEKTAPAVVYIEIL----DRHPFLGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRV 75
Query: 181 TFADQSAYDAKIVGFDQDKDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNPFGLD 240
Y+A + D D+A LRI K+ L +P+G SAD+ G+ V A+G+PF L
Sbjct: 76 RLLSGDTYEAVVTAVDPVADIATLRIQT-KEPLPTLPLGRSADVRQGEFVVAMGSPFALQ 134
Query: 241 HTLTTGVISGLRREISSAATGRPIQDVIQTDAAIN 275
+T+T+G++S +R + + IQTDAAI+
Sbjct: 135 NTITSGIVSSAQRPARDLGLPQTNVEYIQTDAAID 169
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
PSVV I +LA R VLE G+GFV S V+TN HV+ G++++ V +A
Sbjct: 42 PSVVKIRSLAPR----CQKVLE-----GTGFVI-SPDRVMTNAHVVAGSNNVTV-YAGDK 90
Query: 187 AYDAKIVGFDQDKDVAVL 204
++A +V +D DVA+L
Sbjct: 91 PFEATVVSYDPSVDVAIL 108
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
PSVV I +LA R VLE G+GFV S V+TN HV+ G++++ V +A
Sbjct: 24 PSVVKIRSLAPR----CQKVLE-----GTGFVI-SPDRVMTNAHVVAGSNNVTV-YAGDK 72
Query: 187 AYDAKIVGFDQDKDVAVL 204
++A +V +D DVA+L
Sbjct: 73 PFEATVVSYDPSVDVAIL 90
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 11/78 (14%)
Query: 127 PSVVNITNLAARQDAFTLDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQS 186
PSVV I +LA R VLE G+GFV S V+TN HV+ G++++ V +A
Sbjct: 22 PSVVKIRSLAPR----CQKVLE-----GTGFVI-SPDRVMTNAHVVAGSNNVTV-YAGDK 70
Query: 187 AYDAKIVGFDQDKDVAVL 204
++A +V +D DVA+L
Sbjct: 71 PFEATVVSYDPSVDVAIL 88
>pdb|2KJP|A Chain A, Solution Structure Of Protein Ylbl (Bsu15050) From
Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr713a
Length = 91
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 324 AYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPD 383
A G++ +GD I S +GK + L + K GD+V +++ R ++++++ + L+ PD
Sbjct: 14 AKGKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPD 73
Query: 384 E 384
E
Sbjct: 74 E 74
>pdb|3I1E|A Chain A, Crystal Structure Of The Pdz Domain Of The Sdrc-Like
Protein (Lin2157) From Listeria Innocua, Northeast
Structural Genomics Consortium Target Lkr136c
pdb|3I1E|B Chain B, Crystal Structure Of The Pdz Domain Of The Sdrc-Like
Protein (Lin2157) From Listeria Innocua, Northeast
Structural Genomics Consortium Target Lkr136c
Length = 90
Score = 36.2 bits (82), Expect = 0.029, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 317 LLSTKRD--AYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKI 374
+LS K D A G L GD+IT ++G+ + + + KVGD V ++ G++ E+
Sbjct: 6 VLSVKEDVPAAGILHAGDLITEIDGQSFKSSQEFIDYIHSKKVGDTVKIKYKHGNKNEEA 65
Query: 375 PVKL 378
+KL
Sbjct: 66 SIKL 69
>pdb|2KJK|A Chain A, Solution Structure Of The Second Domain Of The Listeria
Protein Lin2157, Northeast Structural Genomics
Consortium Target Lkr136b
Length = 100
Score = 35.8 bits (81), Expect = 0.038, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 317 LLSTKRD--AYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKI 374
+LS K D A G L GD+IT ++G+ + + + KVGD V ++ G++ E+
Sbjct: 11 VLSVKEDVPAAGILHAGDLITEIDGQSFKSSQEFIDYIHSKKVGDTVKIKYKHGNKNEEA 70
Query: 375 PVKL 378
+KL
Sbjct: 71 SIKL 74
>pdb|2KL1|A Chain A, Solution Structure Of Gtr34c From Geobacillus
Thermodenitrificans. Northeast Structural Genomics
Consortium Target Gtr34c
Length = 94
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 324 AYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKP 382
A GRL GD I +++G+ ++ + + + + GD V V +R ++ + + L+P P
Sbjct: 18 AAGRLEAGDRIAAIDGQPINTSEQIVSYVREKQAGDRVRVTFIRDRKQHEAELVLKPFP 76
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 324 AYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKL 378
A G L D+IT V+ K++++ +DL L +GD + + R ++E +KL
Sbjct: 70 ANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKL 124
>pdb|3I18|A Chain A, Crystal Structure Of The Pdz Domain Of The Sdrc-Like
Protein (Lmo2051) From Listeria Monocytogenes, Northeast
Structural Genomics Consortium Target Lmr166b
Length = 100
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 328 LILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKL 378
L GD+IT ++G + + + KVGD V + GD+ E+ +KL
Sbjct: 24 LHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKINYKHGDKNEQADIKL 74
>pdb|1AGJ|A Chain A, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1AGJ|B Chain B, Epidermolytic Toxin A From Staphylococcus Aureus
pdb|1EXF|A Chain A, Exfoliative Toxin A
pdb|1DUA|A Chain A, Crystal Structure Of Exfoliative Toxin A
Length = 242
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 200 DVAVLRIDAPK------DKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLT 244
D+A++R+ + DK+ P IG S DL G K+ IG PF DH +
Sbjct: 120 DLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPF--DHKVN 168
>pdb|1DUE|A Chain A, Crystal Structure Of Exfoliative Toxin A S195a Mutant
Length = 242
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 200 DVAVLRIDAPK------DKLRPIPIGVSADLLVGQKVYAIGNPFGLDHTLT 244
D+A++R+ + DK+ P IG S DL G K+ IG PF DH +
Sbjct: 120 DLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPF--DHKVN 168
>pdb|2W5E|A Chain A, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|B Chain B, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|C Chain C, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|D Chain D, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|E Chain E, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
pdb|2W5E|F Chain F, Structural And Biochemical Analysis Of Human Pathogenic
Astrovirus Serine Protease At 2.0 Angstrom Resolution
Length = 163
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 7/72 (9%)
Query: 144 LDVLEVPQGSGSGFVWDSKGHVVTNYHVIRGASDIRVTFADQSAYDAKIVGFDQDKDVAV 203
L V++ P+G G+GF S +VT HV+ + + V + + Y+AK V + +KD+A
Sbjct: 13 LCVIDTPEGKGTGFF--SGNDIVTAAHVVGNNTFVNVCY-EGLMYEAK-VRYMPEKDIAF 68
Query: 204 LRIDAPKDKLRP 215
I P D L P
Sbjct: 69 --ITCPGD-LHP 77
>pdb|1Q25|A Chain A, Crystal Structure Of N-terminal 3 Domains Of Ci-mpr
pdb|1SYO|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SYO|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SZ0|A Chain A, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
pdb|1SZ0|B Chain B, N-Terminal 3 Domains Of Ci-Mpr Bound To Mannose
6-Phosphate
Length = 432
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 199 KDVAVLRIDAPKDKLRPIPIGVSADLLVGQKVYAIGNP 236
+D+ VLR +P+ +R P G +A L+ G + + +G P
Sbjct: 175 RDIEVLRASSPQ--VRVCPTGAAACLVRGDRAFDVGRP 210
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 328 LILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEV 365
L +GD I SVNG+ +S+ + + K G EV++EV
Sbjct: 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 159
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 28.5 bits (62), Expect = 6.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 316 GLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEV 365
GL + + +A L +GD I SVNG+ +S+ + + K G EV++EV
Sbjct: 36 GLAADQTEA---LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|2Q5T|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae
pdb|3Q9O|A Chain A, Full-Length Cholix Toxin From Vibrio Cholerae In Complex
With Nad
Length = 642
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 85 SVVLSFTLLFSNVDSASAFVVTPQRKLQTDELATVRLFQENTPSVVNITNLAARQ 139
S+ ++ +LFS++DS + Q + L+ +R EN P +V ARQ
Sbjct: 317 SLFVATRILFSHLDSVFTLNLDEQEPEVAERLSDLRRINENNPGMVTQVLTVARQ 371
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 316 GLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEV 365
GL + + +A L +GD I SVNG+ +S+ + + K G EV++EV
Sbjct: 36 GLAADQTEA---LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 28.5 bits (62), Expect = 7.1, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 316 GLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEV 365
GL + + +A L +GD I SVNG+ +S+ + + K G EV++EV
Sbjct: 40 GLAADQTEA---LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,852,597
Number of Sequences: 62578
Number of extensions: 385167
Number of successful extensions: 1074
Number of sequences better than 100.0: 65
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 94
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)