BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016648
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JJM|A Chain A, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|B Chain B, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|C Chain C, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|D Chain D, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|E Chain E, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|F Chain F, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|G Chain G, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|H Chain H, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|I Chain I, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|J Chain J, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|K Chain K, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558.
pdb|2JJM|L Chain L, Crystal Structure Of A Family Gt4 Glycosyltransferase From
Bacillus Anthracis Orf Ba1558
Length = 394
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 23/314 (7%)
Query: 30 FFHHIYSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC-- 87
+FH + +Q P LAL+ ++ R DI+H A + +++
Sbjct: 66 YFHEVTVNQYSVFQYPPYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGER 125
Query: 88 VPIVMSYH-THVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTA 146
+ IV + H T + V + + L I+F +D+ V +V+ E +
Sbjct: 126 IKIVTTLHGTDITVLGSDPSLNNL-------IRFGIEQSDV--VTAVSHSLINETHELVK 176
Query: 147 ANK-IRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVM 204
NK I+ +D + R ++++ E +K LI H+ V++ D ++
Sbjct: 177 PNKDIQTVYNFIDERVYFKR-DMTQLKKEYGISESEKILI-HISNFRKVKRVQDVVQAFA 234
Query: 205 DRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEE--LSQAYASGDVFVMPSES 260
+ E A++ +GDGP + ++ + + LG++ +++ A D+ ++ SE
Sbjct: 235 KIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEK 294
Query: 261 ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320
E+ GLV+LEAM+ G+P +G R GGIP++I Q G GYL GD + LL ++
Sbjct: 295 ESFGLVLLEAMACGVPCIGTRVGGIPEVI---QHGDTGYLCEVGDTTGVADQAIQLLKDE 351
Query: 321 ELRETMGQAARQEM 334
EL MG+ AR+ +
Sbjct: 352 ELHRNMGERARESV 365
>pdb|3MBO|A Chain A, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|B Chain B, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|C Chain C, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|D Chain D, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|E Chain E, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|F Chain F, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|G Chain G, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
pdb|3MBO|H Chain H, Crystal Structure Of The Glycosyltransferase Babsha Bound
With Udp And L-Malate
Length = 414
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 23/314 (7%)
Query: 30 FFHHIYSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC-- 87
+FH + +Q P LAL+ ++ R DI+H A + +++
Sbjct: 86 YFHEVTVNQYSVFQYPPYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGER 145
Query: 88 VPIVMSYH-THVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTA 146
+ IV + H T + V + + L I+F +D+ V +V+ E +
Sbjct: 146 IKIVTTLHGTDITVLGSDPSLNNL-------IRFGIEQSDV--VTAVSHSLINETHELVK 196
Query: 147 ANK-IRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVM 204
NK I+ +D + R ++++ E +K LI H+ V++ D ++
Sbjct: 197 PNKDIQTVYNFIDERVYFKR-DMTQLKKEYGISESEKILI-HISNFRKVKRVQDVVQAFA 254
Query: 205 DRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEE--LSQAYASGDVFVMPSES 260
+ E A++ +GDGP + ++ + + LG++ +++ A D+ ++ SE
Sbjct: 255 KIVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEK 314
Query: 261 ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320
E+ GLV+LEAM+ G+P +G R GGIP++I Q G GYL GD + LL ++
Sbjct: 315 ESFGLVLLEAMACGVPCIGTRVGGIPEVI---QHGDTGYLCEVGDTTGVADQAIQLLKDE 371
Query: 321 ELRETMGQAARQEM 334
EL MG+ AR+ +
Sbjct: 372 ELHRNMGERARESV 385
>pdb|3C4Q|A Chain A, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4Q|B Chain B, Structure Of The Retaining Glycosyltransferase Msha : The
First Step In Mycothiol Biosynthesis. Organism :
Corynebacterium Glutamicum- Complex With Udp
pdb|3C4V|A Chain A, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P.
pdb|3C4V|B Chain B, Structure Of The Retaining Glycosyltransferase Msha:the
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum : Complex With Udp And
1l-Ins-1- P
Length = 426
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 148 NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP-DKPLIVHVGRL----GVEKSLDFLKR 202
++I + G D E + P + R R G P ++ VGRL G + + +
Sbjct: 188 DRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAA 247
Query: 203 VMDRLPEARI-AFIGDGP---------YREELEKMFTGMPAVFTGMLLGEELSQAYASGD 252
+ DR P+ + I GP YR E++ F EL Y + D
Sbjct: 248 LFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAAD 307
Query: 253 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 312
+ +PS +E+ GLV +EA +SG PV+ R GG+P + E + G + +P D L+
Sbjct: 308 IVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALAT 367
Query: 313 LEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355
LL + E R MG+ A + + W AAT + YN AI
Sbjct: 368 ---LLDDDETRIRMGEDAVEHARTFSW-AATAAQLSSLYNDAI 406
>pdb|3C48|A Chain A, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure.
pdb|3C48|B Chain B, Structure Of The Retaining Glycosyltransferase Msha: The
First Step In Mycothiol Biosynthesis. Organism:
Corynebacterium Glutamicum- Apo (Open) Structure
Length = 438
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 148 NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP-DKPLIVHVGRL----GVEKSLDFLKR 202
++I + G D E + P + R R G P ++ VGRL G + + +
Sbjct: 208 DRISVVSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAA 267
Query: 203 VMDRLPEARI-AFIGDGP---------YREELEKMFTGMPAVFTGMLLGEELSQAYASGD 252
+ DR P+ + I GP YR E++ F EL Y + D
Sbjct: 268 LFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAAD 327
Query: 253 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 312
+ +PS +E+ GLV +EA +SG PV+ R GG+P + E + G + +P D L+
Sbjct: 328 IVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLVDGHSPHAWADALAT 387
Query: 313 LEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355
LL + E R MG+ A + + W AAT + YN AI
Sbjct: 388 ---LLDDDETRIRMGEDAVEHARTFSW-AATAAQLSSLYNDAI 426
>pdb|3OKC|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp (Orthorhombic Crystal Form)
pdb|3OKP|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb'
Bound To Gdp-Man (Orthorhombic Crystal Form)
Length = 394
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/148 (29%), Positives = 71/148 (47%), Gaps = 14/148 (9%)
Query: 156 GVDSESFHPRFRSSEMRWRLSNGEPDK-PLIVHVGRLGVEKSLDFLKRVMDRL----PEA 210
GVD + F P + R G D P+I RL K D L + M ++ P+A
Sbjct: 171 GVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDA 230
Query: 211 RIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSES-------E 261
++ +G G Y L ++ T + F G L +++ A+ D+F MP+ + E
Sbjct: 231 QLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVE 290
Query: 262 TLGLVVLEAMSSGIPVVGVRAGGIPDII 289
LG+V LEA + G+PV+ +GG P+ +
Sbjct: 291 GLGIVYLEAQACGVPVIAGTSGGAPETV 318
>pdb|3OKA|A Chain A, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
pdb|3OKA|B Chain B, Crystal Structure Of Corynebacterium Glutamicum Pimb' In
Complex With Gdp-Man (Triclinic Crystal Form)
Length = 381
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 155 KGVDSESFHPRFRSSEMRWRLSNGEPDK-PLIVHVGRLGVEKSLDFLKRVMDRL----PE 209
GVD + F P + R G D P+I RL K D L + M ++ P+
Sbjct: 170 SGVDVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPD 229
Query: 210 ARIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSES------- 260
A++ +G G Y L ++ T + F G L +++ A+ D+F MP+ +
Sbjct: 230 AQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDV 289
Query: 261 ETLGLVVLEAMSSGIPVVGVRAGGIPDII 289
E LG+V LEA + G+PV+ +GG P+ +
Sbjct: 290 EGLGIVYLEAQACGVPVIAGTSGGAPETV 318
>pdb|2X6Q|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6Q|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi
pdb|2X6R|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
pdb|2X6R|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshi Produced By Soaking In Trehalose
Length = 416
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 82/174 (47%), Gaps = 21/174 (12%)
Query: 179 EPDKPLIVHVGRL----GVEKSLDFLKRVMDRLPEARIAFIG----DGP-----YREELE 225
+P+KP+I V R G+ ++ ++V +++P ++ +G D P + + L
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLR 287
Query: 226 KMFTGMPAVFTGMLLG---EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 282
K+ L+G E++ + DV + S E GL V EAM G PV+G
Sbjct: 288 KIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVIGRAV 347
Query: 283 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 336
GGI I DG+ G+L D ++ + + LL + E+ + MG A++ + K
Sbjct: 348 GGIKFQIV---DGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRK 396
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/293 (25%), Positives = 120/293 (40%), Gaps = 36/293 (12%)
Query: 65 DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA 124
D++H P L + + PIV ++HT + F +++P K + R
Sbjct: 109 DVLHIHEPNAPSLSMLAL-QAAEGPIVATFHTSTTKSLTLSVFQGILRPYHE--KIIGRI 165
Query: 125 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF--------HPRFRSSEMRWRLS 176
A V +A +EA ++ + I GVD SF +PR E R L
Sbjct: 166 A----VSDLARRWQMEA---LGSDAVEI-PNGVDVASFADAPLLDGYPR----EGRTVLF 213
Query: 177 NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPA--V 234
G D+P R G+ L L +++ R P+ I +G G +EL + +
Sbjct: 214 LGRYDEP------RKGMAVLLAALPKLVARFPDVEILIVGRGD-EDELREQAGDLAGHLR 266
Query: 235 FTGMLLGEELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ 293
F G + + A S DV+ P E+ G+V++EAM++G VV ++
Sbjct: 267 FLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVL---A 323
Query: 294 DGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 346
DG G L D D + L +L + +LR A + + +YDW + I
Sbjct: 324 DGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQI 376
>pdb|2XMP|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XMP|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horishiki In Complex With Udp
pdb|2XA2|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA2|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|A Chain A, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
pdb|2XA9|B Chain B, Crystal Structure Of Trehalose Synthase Tret Mutant E326a
From P.Horikoshii In Complex With Udpg
Length = 416
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 21/174 (12%)
Query: 179 EPDKPLIVHVGRL----GVEKSLDFLKRVMDRLPEARIAFIG----DGP-----YREELE 225
+P+KP+I V R G+ ++ ++V +++P ++ +G D P + + L
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLR 287
Query: 226 KMFTGMPAVFTGMLLG---EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 282
K+ L+G E++ + DV + S GL V EAM G PV+G
Sbjct: 288 KIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIRAGFGLTVTEAMWKGKPVIGRAV 347
Query: 283 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 336
GGI I DG+ G+L D ++ + + LL + E+ + MG A++ + K
Sbjct: 348 GGIKFQIV---DGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRK 396
>pdb|2R60|A Chain A, Structure Of Apo Sucrose Phosphate Synthase (Sps) Of
Halothermothrix Orenii
pdb|2R66|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-F6p
Of Halothermothrix Orenii
pdb|2R68|A Chain A, Complex Structure Of Sucrose Phosphate Synthase (Sps)-S6p
Of Halothermothrix Orenii
Length = 499
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 53/108 (49%), Gaps = 8/108 (7%)
Query: 242 EELSQAYA----SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKI 297
+EL+ YA G VF + S E GL +EAM+SG+P V R GG +I+ GK
Sbjct: 346 QELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEIL---DGGKY 402
Query: 298 GYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATR 344
G L +P D +D L ++E + +Q + E+Y W+ R
Sbjct: 403 GVLVDPEDPEDIARGLLKAFESEETWSAYQEKGKQRVEERYTWQETAR 450
>pdb|2XA1|A Chain A, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
pdb|2XA1|B Chain B, Crystal Structure Of Trehalose Synthase Tret From P.
Horikoshii (Seleno Derivative)
Length = 416
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 21/174 (12%)
Query: 179 EPDKPLIVHVGRL----GVEKSLDFLKRVMDRLPEARIAFIG----DGP-----YREELE 225
+P+KP+I V R G+ ++ ++V +++P ++ +G D P + + L
Sbjct: 228 DPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQLLLVGVXAHDDPEGWIYFEKTLR 287
Query: 226 KMFTGMPAVFTGMLLG---EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 282
K+ L+G E++ + DV + S E GL V EA G PV+G
Sbjct: 288 KIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQXSIREGFGLTVTEAXWKGKPVIGRAV 347
Query: 283 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 336
GGI I DG+ G+L D ++ + + LL + E+ + G A++ + K
Sbjct: 348 GGIKFQIV---DGETGFLVR--DANEAVEVVLYLLKHPEVSKEXGAKAKERVRK 396
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGE 242
PLI +GRL +K D + + L + + + G +++ EK+ M + G +
Sbjct: 328 PLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAV 387
Query: 243 ELSQA------YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG 295
A A DV +PS E GL+ L+ M G P GG+ D + E + G
Sbjct: 388 VKFNAPLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTVIEGKTG 446
>pdb|2IW1|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 173 WRLSNG-EPDKPLIVHVG----RLGVEKSLDFLKRVMDRLPEARIAFI--GDGPYREELE 225
+R NG + + L++ VG R GV++S++ L + + L + F+ D P + E
Sbjct: 186 YRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEAL 245
Query: 226 KMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 285
G+ + ++S+ A+ D+ + P+ E G+V+LEA+++G+PV+ G
Sbjct: 246 AEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGY 305
Query: 286 PDIIPEDQDGK-IGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 338
I + G I F+ L++ L K L LR + AR + D
Sbjct: 306 AHYIADANCGTVIAEPFSQEQLNEVLRK---ALTQSPLRMAWAENARHYADTQD 356
>pdb|3FRO|A Chain A, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|B Chain B, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
pdb|3FRO|C Chain C, Crystal Structure Of Pyrococcus Abyssi Glycogen Synthase
With Open And Closed Conformations
Length = 439
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 110/273 (40%), Gaps = 28/273 (10%)
Query: 64 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWL----VKPMWLVIK 119
PD++H + GALI K +P V + H +P + F + P + I
Sbjct: 123 PDVVHFHDWHTVFAGALI-KKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAP-YPDID 180
Query: 120 FLHRA---ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVD----SESFHPRFRSSEMR 172
H AD+ S D KI G+D +ES+ R +
Sbjct: 181 PEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKK 240
Query: 173 WRLSN-GEPDKPLIVHVGRLG-VEKSLDFLKRVMDRLP------EARIAFIGDGP----- 219
LS G + + +GR +K +D L + ++ L E R IG G
Sbjct: 241 SLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEG 300
Query: 220 YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279
+ LE+ G V T ML E + + Y S D ++PS E GLV LEAM G +
Sbjct: 301 WARSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 359
Query: 280 VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 312
GG+ DII ++ G + +PG+L + + K
Sbjct: 360 SAVGGLRDIIT-NETGILVKAGDPGELANAILK 391
>pdb|3L01|A Chain A, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
pdb|3L01|B Chain B, Crystal Structure Of Monomeric Glycogen Synthase From
Pyrococcus Abyssi
Length = 428
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 110/273 (40%), Gaps = 28/273 (10%)
Query: 64 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWL----VKPMWLVIK 119
PD++H + GALI K +P V + H +P + F + P + I
Sbjct: 123 PDVVHFHDWHTVFAGALI-KKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAP-YPDID 180
Query: 120 FLHRA---ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVD----SESFHPRFRSSEMR 172
H AD+ S D KI G+D +ES+ R +
Sbjct: 181 PEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKK 240
Query: 173 WRLSN-GEPDKPLIVHVGRLG-VEKSLDFLKRVMDRLP------EARIAFIGDGP----- 219
LS G + + +GR +K +D L + ++ L E R IG G
Sbjct: 241 SLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEG 300
Query: 220 YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279
+ LE+ G V T ML E + + Y S D ++PS E GLV LEAM G +
Sbjct: 301 WARSLEEKH-GNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 359
Query: 280 VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 312
GG+ DII ++ G + +PG+L + + K
Sbjct: 360 SAVGGLRDIIT-NETGILVKAGDPGELANAILK 391
>pdb|2BIS|A Chain A, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|B Chain B, Structure Of Glycogen Synthase From Pyrococcus Abyssi
pdb|2BIS|C Chain C, Structure Of Glycogen Synthase From Pyrococcus Abyssi
Length = 440
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 110/273 (40%), Gaps = 28/273 (10%)
Query: 64 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWL----VKPMWLVIK 119
PD++H + GALI K +P V + H +P + F + P + I
Sbjct: 124 PDVVHFHDWHTVFAGALI-KKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAP-YPDID 181
Query: 120 FLHRA---ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVD----SESFHPRFRSSEMR 172
H AD+ S D KI G+D +ES+ R +
Sbjct: 182 PEHTGGYIADIVTTVSRGYLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKK 241
Query: 173 WRLSN-GEPDKPLIVHVGRLG-VEKSLDFLKRVMDRLP------EARIAFIGDGP----- 219
LS G + + +GR +K +D L + ++ L E R IG G
Sbjct: 242 SLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKGDPELEG 301
Query: 220 YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279
+ LE+ G V T ML E + + Y S D ++PS E GLV LEAM G +
Sbjct: 302 WARSLEEK-HGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA 360
Query: 280 VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 312
GG+ DII ++ G + +PG+L + + K
Sbjct: 361 SAVGGLRDIIT-NETGILVKAGDPGELANAILK 392
>pdb|2F9F|A Chain A, Crystal Structure Of The Putative Mannosyl Transferase
(Wbaz-1)from Archaeoglobus Fulgidus, Northeast
Structural Genomics Target Gr29a
Length = 177
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 186 VHVGRLGVEKSLDFLKRVMDRLPEARIAFIG---DGPYREELEKMFTGMP---AVFTGML 239
+ V R+ EK ++ V +L + ++ +G G + E + + F G +
Sbjct: 27 LSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIXKIAPDNVKFLGSV 86
Query: 240 LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY 299
EEL Y+ + ++ E GL +EA +SG PV+ V GG + + + K GY
Sbjct: 87 SEEELIDLYSRCKGLLCTAKDEDFGLTPIEAXASGKPVIAVNEGGFKETVINE---KTGY 143
Query: 300 LFN 302
L N
Sbjct: 144 LVN 146
>pdb|2BFW|A Chain A, Structure Of The C Domain Of Glycogen Synthase From
Pyrococcus Abyssi
Length = 200
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 155 KGVD----SESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLG-VEKSLDFLKRVMDRLP 208
G+D +ES+ R + LS G + + +GR +K +D L + ++ L
Sbjct: 4 NGIDCSFWNESYLTGSRDERKKSLLSKFGMDEGVTFMFIGRFDRGQKGVDVLLKAIEILS 63
Query: 209 ------EARIAFIGDGP-----YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 257
E R IG G + LE+ G V T ML E + + Y S D ++P
Sbjct: 64 SKKEFQEMRFIIIGKGDPELEGWARSLEEKH-GNVKVITEMLSREFVRELYGSVDFVIIP 122
Query: 258 SESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 312
S E GLV LEAM G + GG+ DII ++ G + +PG+L + + K
Sbjct: 123 SYFEPFGLVALEAMCLGAIPIASAVGGLRDIIT-NETGILVKAGDPGELANAILK 176
>pdb|2IV7|A Chain A, Crystal Structure Of Waag, A Glycosyltransferase Involved
In Lipopolysaccharide Biosynthesis
Length = 374
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
Query: 173 WRLSNG-EPDKPLIVHVG----RLGVEKSLDFLKRVMDRLPEARIAFI--GDGPYREELE 225
+R NG + + L++ VG R GV++S++ L + + L + F+ D P + E
Sbjct: 186 YRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEAL 245
Query: 226 KMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 285
G+ + ++S+ A+ D+ + P+ E G+V+LEA+++G+PV+ G
Sbjct: 246 AEKLGVRSNVHFFSGRNDVSELXAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGY 305
Query: 286 PDIIPEDQDGK-IGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 338
I + G I F+ L++ L K L LR + AR + D
Sbjct: 306 AHYIADANCGTVIAEPFSQEQLNEVLRK---ALTQSPLRXAWAENARHYADTQD 356
>pdb|3OY2|A Chain A, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY2|B Chain B, Crystal Structure Of A Putative Glycosyltransferase From
Paramecium Bursaria Chlorella Virus Ny2a
pdb|3OY7|A Chain A, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
pdb|3OY7|B Chain B, Crystal Structure Of A Virus Encoded Glycosyltransferase
In Complex With Gdp-Mannose
Length = 413
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 21/133 (15%)
Query: 181 DKPLIVHVGRLGVEKSLDFL----KRVMDRLPEARIAFIGDGPYREEL--------EKMF 228
D L +++ R K LD R + + P+A++ F+ + + + E +
Sbjct: 183 DDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVA 242
Query: 229 TGMPAVFTGM---------LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279
+G+ VFT + L E + Y + DV V S E GL E G P++
Sbjct: 243 SGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLII 302
Query: 280 VRAGGIPDIIPED 292
GG D D
Sbjct: 303 SAVGGADDYFSGD 315
>pdb|3S28|A Chain A, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|B Chain B, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|C Chain C, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|D Chain D, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|E Chain E, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|F Chain F, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|G Chain G, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S28|H Chain H, The Crystal Structure Of Sucrose Synthase-1 In Complex
With A Breakdown Product Of The Udp-Glucose
pdb|3S29|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S29|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 253 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 312
FV P+ E GL V+EAM+ G+P GG +II GK G+ +P D
Sbjct: 667 AFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVH---GKSGFHIDPYHGDQAADT 723
Query: 313 L 313
L
Sbjct: 724 L 724
>pdb|1RZU|A Chain A, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
pdb|1RZU|B Chain B, Crystal Structure Of The Glycogen Synthase From A.
Tumefaciens In Complex With Adp
Length = 485
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 124/328 (37%), Gaps = 60/328 (18%)
Query: 37 FPCPWYQKVPLSLALSPRIISEVARFKPDIIHASS-PGIMVFGALIIAKLLCVPIVMSYH 95
+P W + LSLA + + ++PD++HA M + A+ +P +++ H
Sbjct: 104 YPDNWKRFAALSLAAARIGAGVLPGWRPDMVHAHDWQAAMTPVYMRYAETPEIPSLLTIH 163
Query: 96 T-----------HVPVYIPRYTFSWLVKPMWLVIKFLHRA-----ADLTLVPSVA----- 134
+ +P + F + + FL A T+ PS A
Sbjct: 164 NIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQTATALSTVSPSYAEEILT 223
Query: 135 --IGKDLEAARVTAANKIRIWKKGVDSESFHP--------RFRSSEMRWRLSN------- 177
G LE + A+ + G+D++ ++P + ++ ++ R N
Sbjct: 224 AEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEH 283
Query: 178 ---GEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFT--- 229
+ PL + RL +K +D + +D + R+ +G G E +
Sbjct: 284 FRIDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASR 343
Query: 230 --GMPAVFTGMLLGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSG-IPVVGVRAGGI 285
G V G E LS +G D ++PS E GL L A+ G IPVV R GG+
Sbjct: 344 HHGRVGVAIGY--NEPLSHLMQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVV-ARTGGL 400
Query: 286 PDIIPEDQDGKI------GYLFNPGDLD 307
D + + + G F+P LD
Sbjct: 401 ADTVIDANHAALASKAATGVQFSPVTLD 428
>pdb|3S27|A Chain A, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|B Chain B, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|C Chain C, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|D Chain D, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|E Chain E, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|F Chain F, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|G Chain G, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications.
pdb|3S27|H Chain H, The Crystal Structure Of Sucrose Synthase-1 From
Arabidopsis Thaliana And Its Functional Implications
Length = 816
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 253 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 312
FV P+ E GL V+EA + G+P GG +II GK G+ +P D
Sbjct: 667 AFVQPALYEAFGLTVVEAXTCGLPTFATCKGGPAEIIVH---GKSGFHIDPYHGDQAADT 723
Query: 313 L 313
L
Sbjct: 724 L 724
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 183 PLIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGML- 239
PL V RL +K LD + + L E ++A +G G L++ F A + G +
Sbjct: 293 PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD--PVLQEGFLAAAAEYPGQVG 350
Query: 240 ----LGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE 291
E S G DV ++PS E GL L + G + R GG+ D + +
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407
>pdb|1RZV|A Chain A, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
pdb|1RZV|B Chain B, Crystal Structure Of The Glycogen Synthase From
Agrobacterium Tumefaciens (Non-Complexed Form)
Length = 485
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 29/181 (16%)
Query: 152 IWKKGVDSESFHPRFRSSEMRWRLSN----------GEPDKPLIVHVGRLGVEKSLDFLK 201
+W D H + ++ ++ R N + PL + RL +K +D
Sbjct: 252 VWNPATD-HLIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVISRLTWQKGIDLXA 310
Query: 202 RVMDRLPE--ARIAFIGDGPYREELEKMFT-----GMPAVFTGMLLGEELSQAYASG-DV 253
+D + R+ +G G E + G V G E LS +G D
Sbjct: 311 EAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY--NEPLSHLXQAGCDA 368
Query: 254 FVMPSESETLGLVVLEAMSSG-IPVVGVRAGGIPDIIPEDQDGKI------GYLFNPGDL 306
++PS E GL L A+ G IPVV R GG+ D + + + G F+P L
Sbjct: 369 IIIPSRFEPCGLTQLYALRYGCIPVV-ARTGGLADTVIDANHAALASKAATGVQFSPVTL 427
Query: 307 D 307
D
Sbjct: 428 D 428
>pdb|3D1J|A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c408s)
Length = 477
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 183 PLIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGML- 239
PL V RL +K LD + + L E ++A +G G L++ F A + G +
Sbjct: 293 PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD--PVLQEGFLAAAAEYPGQVG 350
Query: 240 ----LGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE 291
E S G DV ++PS E GL L + G + R GG+ D + +
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407
>pdb|1JBY|A Chain A, Crystal Structure Analysis Of A Dual-Wavelength Emission
Green Fluorescent Protein Variant At Low Ph
pdb|1JBZ|A Chain A, Crystal Structure Analysis Of A Dual-Wavelength Emission
Green Fluorescent Protein Variant At High Ph
Length = 236
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y SG+V++M + +
Sbjct: 137 HKLEYNYNSGNVYIMADKQKN 157
>pdb|2YFP|A Chain A, Structure Of Yellow-Emission Variant Of Gfp
Length = 236
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y SG+V++M + +
Sbjct: 137 HKLEYNYNSGNVYIMADKQKN 157
>pdb|1YJ2|A Chain A, Cyclized, Non-Dehydrated Post-Translational Product For
S65a Y66s H148g Gfp Variant
Length = 237
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y SG+V++ + +
Sbjct: 138 HKLEYNYNSGNVYITADKQKN 158
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 10/117 (8%)
Query: 183 PLIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPAVFTGML- 239
PL V RL +K LD + + L E ++A +G G L++ F A + G +
Sbjct: 293 PLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGD--PVLQEGFLAAAAEYPGQVG 350
Query: 240 ----LGEELSQAYASG-DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE 291
E S G DV ++PS GL L + G + R GG+ D + +
Sbjct: 351 VQIGYHEAFSHRIMGGADVILVPSRFAPCGLTQLYGLKYGTLPLVRRTGGLADTVSD 407
>pdb|2FWQ|A Chain A, Reduced Enolate Chromophore Intermediate For Y66h Gfp
Variant
Length = 237
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y SG+V++ + +
Sbjct: 138 HKLEYNYNSGNVYITADKQKN 158
>pdb|1QYF|A Chain A, Crystal Structure Of Matured Green Fluorescent Protein
R96a Variant
Length = 228
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++ + +
Sbjct: 138 HKLEYNYNSHNVYITADKQKN 158
>pdb|2AWM|A Chain A, Gfp R96a Chromophore Maturation Recovery Mutant R96a Q183r
Length = 228
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++ + +
Sbjct: 138 HKLEYNYNSHNVYITADKQKN 158
>pdb|1QXT|A Chain A, Crystal Structure Of Precyclized Intermediate For The
Green Fluorescent Protein R96a Variant (A)
Length = 230
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++ + +
Sbjct: 140 HKLEYNYNSHNVYITADKQKN 160
>pdb|1QY3|A Chain A, Crystal Structure Of Precyclized Intermediate For The
Green Fluorescent Protein R96a Variant (B)
Length = 229
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 79 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 138
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++ + +
Sbjct: 139 HKLEYNYNSHNVYITADKQKN 159
>pdb|2HFC|A Chain A, Structure Of S65t Y66f R96a Gfp Variant In Precursor State
Length = 239
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++ + +
Sbjct: 140 HKLEYNYNSHNVYITADKQKN 160
>pdb|1YHI|A Chain A, Uncyclized Precursor Structure Of S65a Y66s R96a Gfp
Variant
Length = 239
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + EA I+F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQEATISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++ + +
Sbjct: 140 HKLEYNYNSHNVYITADKQKN 160
>pdb|1KYP|A Chain A, Crystal Structure Of An Apo Green Fluorescent Protein Zn
Biosensor
pdb|1KYR|A Chain A, Crystal Structure Of A Cu-Bound Green Fluorescent Protein
Zn Biosensor
pdb|1KYS|A Chain A, Crystal Structure Of A Zn-Bound Green Fluorescent Protein
Biosensor
Length = 237
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I+F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTISFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 242 EELSQAYASGDVFVMPSESET 262
+L + SG+V++ + +
Sbjct: 138 HKLEYNFNSGNVYITADKQKN 158
>pdb|2DUG|A Chain A, Crystal Structure Of A Green Fluorescent Protein S65tH148N
At Ph 5
pdb|2DUH|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148N AT PH 9.5
Length = 236
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSNNVYIMADKQKN 157
>pdb|2YE1|A Chain A, X-Ray Structure Of The Cyan Fluorescent Protein
Mturquoise-Gl (K206a Mutant)
Length = 243
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y SG+V++ + +
Sbjct: 138 HKLEYNYISGNVYITADKQKN 158
>pdb|3VHT|B Chain B, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion Protein
In Complex With Ubiquitin
Length = 271
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|2OKW|A Chain A, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|B Chain B, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|C Chain C, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|D Chain D, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|E Chain E, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKW|F Chain F, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKY|A Chain A, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
pdb|2OKY|B Chain B, A Non-Invasive Gfp-Based Biosensor For Mercury Ions
Length = 236
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|2HJO|A Chain A, Crystal Structure Of V224h Design Intermediate For Gfp
Metal Ion Reporter
Length = 236
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|2HQZ|A Chain A, Crystal Structure Of L42h Design Intermediate For Gfp
Metal Ion Reporter
Length = 236
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|3VHT|A Chain A, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion Protein
In Complex With Ubiquitin
Length = 233
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|4BDU|A Chain A, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|B Chain B, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|C Chain C, Bax Bh3-in-groove Dimer (gfp)
pdb|4BDU|D Chain D, Bax Bh3-in-groove Dimer (gfp)
Length = 309
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|2Y0G|A Chain A, X-Ray Structure Of Enhanced Green Fluorescent Protein
(Egfp)
Length = 250
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 91 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 150
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 151 HKLEYNYNSHNVYIMADKQKN 171
>pdb|4EUL|A Chain A, Crystal Structure Of Enhanced Green Fluorescent Protein To
1.35a Resolution Reveals Alternative Conformations For
Glu222
Length = 237
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 78 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 137
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 138 HKLEYNYNSHNVYIMADKQKN 158
>pdb|2H6V|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins- E2(Gfp) Apo Form
pdb|2O24|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-Cl Complex
pdb|2O29|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-Br Complex
pdb|2O2B|A Chain A, Spectroscopic And Structural Study Of The Heterotropic
Linkage Between Halide And Proton Ion Binding To Gfp
Proteins: E2(Gfp)-I Complex
Length = 242
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 83 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 142
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 143 HKLEYNYNSHNVYIMADKQKN 163
>pdb|1RMM|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria Green
Fluorescent Proteins With An Expanded Genetic Code
pdb|1RMP|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria Green
Fluorescent Proteins With An Expanded Genetic Code
Length = 226
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 76 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 135
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 136 HKLEYNYNSHNVYIMADKQKN 156
>pdb|2DUE|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148D AT PH 10
pdb|2DUF|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
S65tH148D AT PH 5.6
pdb|2DUI|A Chain A, Crystal Structure Of A Green Fluorescent Protein Variant
H148d At Ph 9
Length = 236
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KRHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSDNVYIMADKQKN 157
>pdb|2H9W|A Chain A, Green Fluorescent Protein Ground States: The Influence Of
A Second Protonation Site Near The Chromophore
Length = 238
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|3OGO|A Chain A, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|B Chain B, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|C Chain C, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
pdb|3OGO|D Chain D, Structure Of The Gfp:gfp-Nanobody Complex At 2.8 A
Resolution In Spacegroup P21212
Length = 247
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 88 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 147
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 148 HKLEYNYNSHNVYIMADKQKN 168
>pdb|1RMO|A Chain A, Probing The Role Of Tryptophans In Aequorea Victoria Green
Fluorescent Proteins With An Expanded Genetic Code
Length = 236
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 77 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 136
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 137 HKLEYNYNSHNVYIMADKQKN 157
>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein- Ubiquitin Fusion Protein
Length = 307
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|3DPW|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1 Atmosphere Number 1: Structure 1 In A Series Of 26
High Pressure Structures
pdb|3DPX|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 5000 Atmospheres: Structure 26 In A Series Of 26 High
Pressure Structures
pdb|3DPZ|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 4000 Atmospheres Number 3: Structure 25 In A Series
Of 26 High Pressure Structures
pdb|3DQ1|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 4000 Atmospheres Number 2: Structure 24 In A Series
Of 26 High Pressure Structures
pdb|3DQ2|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 4000 Atmospheres Number 1: Structure 23 In A Series
Of 26 High Pressure Structures
pdb|3DQ3|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 2500 Atmospheres: Structure 22 In A Series Of 26 High
Pressure Structures
pdb|3DQ4|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 2000 Atmospheres Number 2: Structure 20 In A Series
Of 26 High Pressure Structures
pdb|3DQ5|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1960 Atmospheres: Structure 19 In A Series Of 26 High
Pressure Structures
pdb|3DQ6|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1920 Atmospheres Number 2: Structure 18 In A Series
Of 26 High Pressure Structures
pdb|3DQ7|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1920 Atmospheres Number 1: Structure 17 In A Series
Of 26 High Pressure Structures
pdb|3DQ8|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1500 Atmospheres Number 2: Structure 16 In A Series
Of 26 High Pressure Structures
pdb|3DQ9|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1500 Atmospheres Number 1: Structure 15 In A Series
Of 26 High Pressure Structures
pdb|3DQA|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 4: Structure 14 In A Series
Of 26 High Pressure Structures
pdb|3DQC|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 3: Structure 13 In A Series
Of 26 High Pressure Structures
pdb|3DQD|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 2: Structure 12 In A Series
Of 26 High Pressure Structures
pdb|3DQE|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1250 Atmospheres Number 1: Structure 11 In A Series
Of 26 High Pressure Structures
pdb|3DQF|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 6: Structure 10 In A Series
Of 26 High Pressure Structures
pdb|3DQH|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 5: Structure 9 In A Series Of
26 High Pressure Structures
pdb|3DQI|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 4: Structure 8 In A Series Of
26 High Pressure Structures
pdb|3DQJ|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 3: Structure 7 In A Series Of
26 High Pressure Structures
pdb|3DQK|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 2: Structure 6 In A Series Of
26 High Pressure Structures
pdb|3DQL|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1000 Atmospheres Number 1: Structure 5 In A Series Of
26 High Pressure Structures
pdb|3DQM|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 750 Atmospheres: Structure 4 In A Series Of 26 High
Pressure Structures
pdb|3DQN|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 500 Atmospheres: Structure 3 In A Series Of 26 High
Pressure Structures
pdb|3DQO|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 1 Atmosphere Number 2: Structure 2 In A Series Of 26
High Pressure Structures
pdb|3DQU|A Chain A, Structure Of The Yellow Fluorescent Protein Citrine Frozen
At 2000 Atmospheres Number 1: Structure 20 In A Series
Of 26 High Pressure Structures
Length = 241
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 82 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 141
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 142 HKLEYNYNSHNVYIMADKQKN 162
>pdb|3V3D|A Chain A, Crystal Structure Of An Eyfp Single Mutant
Length = 257
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 98 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 157
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 158 HKLEYNYNSHNVYIMADKQKN 178
>pdb|3U8P|A Chain A, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|B Chain B, Cytochrome B562 Integral Fusion With Egfp
pdb|3U8P|C Chain C, Cytochrome B562 Integral Fusion With Egfp
Length = 347
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 188 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 247
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 248 HKLEYNYNSHNVYIMADKQKN 268
>pdb|3AI4|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein - Mouse Polymerase Iota Ubiquitin Binding Motif
Fusion Protein
Length = 283
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 13/81 (16%)
Query: 195 KSLDFLKRVMDR--LPEARIAFIGDGPYREELEKMFTGMPAVF-----------TGMLLG 241
K DF K M + E I F DG Y+ E F G V G +LG
Sbjct: 80 KQHDFFKSAMPEGYVQERTIFFKDDGNYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILG 139
Query: 242 EELSQAYASGDVFVMPSESET 262
+L Y S +V++M + +
Sbjct: 140 HKLEYNYNSHNVYIMADKQKN 160
>pdb|3MY7|A Chain A, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|B Chain B, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|C Chain C, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
pdb|3MY7|D Chain D, The Crystal Structure Of The Acdh Domain Of An Alcohol
Dehyd From Vibrio Parahaemolyticus To 2.25a
Length = 452
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 267 VLEAMSSGIPVVGVRAGGIPDIIPEDQD 294
V A SSG P +GV AG +P +I E D
Sbjct: 199 VKAAYSSGKPAIGVGAGNVPVVIDETAD 226
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 220 YREELEKMFTGMPAVFTGMLLGEELSQA 247
Y+E + + F MPA F GML G+ L +
Sbjct: 297 YKEYIIEGFENMPAAFMGMLKGDNLGKT 324
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 220 YREELEKMFTGMPAVFTGMLLGEELSQA 247
Y+E + + F MPA F GML G+ L +
Sbjct: 318 YKEYIIEGFENMPAAFMGMLKGDNLGKT 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,750,396
Number of Sequences: 62578
Number of extensions: 494675
Number of successful extensions: 1489
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 1442
Number of HSP's gapped (non-prelim): 73
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)