Query 016648
Match_columns 385
No_of_seqs 363 out of 2670
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 08:44:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02871 UDP-sulfoquinovose:DA 100.0 2.4E-50 5.1E-55 375.7 38.3 343 38-383 119-464 (465)
2 PRK15427 colanic acid biosynth 100.0 4.9E-40 1.1E-44 300.0 30.3 277 56-353 111-405 (406)
3 PRK10307 putative glycosyl tra 100.0 3.2E-39 6.9E-44 297.6 29.8 287 62-356 105-410 (412)
4 TIGR03088 stp2 sugar transfera 100.0 8.8E-39 1.9E-43 291.5 30.8 293 49-354 67-373 (374)
5 TIGR03449 mycothiol_MshA UDP-N 100.0 2.4E-38 5.1E-43 291.6 31.6 287 62-355 100-403 (405)
6 cd05844 GT1_like_7 Glycosyltra 100.0 3.3E-38 7.2E-43 287.2 31.9 282 50-347 69-365 (367)
7 cd03796 GT1_PIG-A_like This fa 100.0 3.2E-38 6.9E-43 289.4 30.6 287 50-357 75-371 (398)
8 TIGR02472 sucr_P_syn_N sucrose 100.0 5.7E-38 1.2E-42 290.2 30.9 292 53-348 102-436 (439)
9 cd03814 GT1_like_2 This family 100.0 1.6E-37 3.4E-42 282.1 33.1 303 38-351 58-363 (364)
10 cd03813 GT1_like_3 This family 100.0 3.2E-38 6.9E-43 294.4 25.6 275 62-352 172-475 (475)
11 TIGR02149 glgA_Coryne glycogen 100.0 2.7E-37 5.9E-42 283.3 31.2 288 61-355 81-388 (388)
12 cd04962 GT1_like_5 This family 100.0 3.9E-37 8.5E-42 280.6 30.9 289 51-354 72-371 (371)
13 PRK00654 glgA glycogen synthas 100.0 2.7E-37 5.9E-42 287.5 30.1 295 54-356 107-465 (466)
14 PLN02939 transferase, transfer 100.0 1.2E-36 2.6E-41 288.7 34.4 301 54-357 599-970 (977)
15 PRK14099 glycogen synthase; Pr 100.0 3.7E-37 8E-42 285.5 28.3 288 61-356 131-481 (485)
16 TIGR02468 sucrsPsyn_pln sucros 100.0 6.9E-37 1.5E-41 294.7 30.7 287 63-356 310-673 (1050)
17 PRK14098 glycogen synthase; Pr 100.0 8.5E-37 1.8E-41 283.3 30.1 298 54-355 130-487 (489)
18 PRK15490 Vi polysaccharide bio 100.0 9.3E-37 2E-41 276.0 27.7 291 51-353 268-575 (578)
19 PRK15179 Vi polysaccharide bio 100.0 1.4E-36 3.1E-41 287.6 29.5 292 50-352 387-692 (694)
20 PLN02316 synthase/transferase 100.0 7.3E-36 1.6E-40 288.5 33.8 275 62-355 708-1035(1036)
21 cd03800 GT1_Sucrose_synthase T 100.0 5.2E-36 1.1E-40 275.8 31.0 291 52-347 88-397 (398)
22 TIGR02095 glgA glycogen/starch 100.0 3E-36 6.5E-41 281.8 29.6 294 54-354 117-473 (473)
23 PRK15484 lipopolysaccharide 1, 100.0 6.8E-36 1.5E-40 271.3 30.7 276 49-354 82-378 (380)
24 cd03818 GT1_ExpC_like This fam 100.0 7.9E-36 1.7E-40 273.5 29.0 280 60-347 84-395 (396)
25 cd03799 GT1_amsK_like This is 100.0 1.4E-35 3.1E-40 268.7 30.3 273 51-345 67-354 (355)
26 cd03816 GT1_ALG1_like This fam 100.0 3.7E-35 8E-40 269.4 28.6 280 58-345 90-409 (415)
27 cd03801 GT1_YqgM_like This fam 100.0 1.1E-34 2.4E-39 263.3 30.7 293 50-351 72-373 (374)
28 cd03795 GT1_like_4 This family 100.0 2.2E-34 4.7E-39 261.1 32.2 271 59-343 79-357 (357)
29 PLN02501 digalactosyldiacylgly 100.0 1.7E-35 3.7E-40 270.6 24.7 308 17-348 384-705 (794)
30 TIGR03087 stp1 sugar transfera 100.0 7.1E-35 1.5E-39 267.1 28.4 284 51-352 92-395 (397)
31 PRK10125 putative glycosyl tra 100.0 9.2E-35 2E-39 264.3 28.7 280 51-354 81-405 (405)
32 cd03809 GT1_mtfB_like This fam 100.0 3.2E-35 7E-40 267.1 25.1 282 52-347 74-364 (365)
33 TIGR02918 accessory Sec system 100.0 1.2E-34 2.6E-39 268.4 28.9 279 52-353 200-499 (500)
34 cd03819 GT1_WavL_like This fam 100.0 1E-34 2.2E-39 263.1 27.5 271 50-341 65-354 (355)
35 cd04946 GT1_AmsK_like This fam 100.0 3.1E-34 6.6E-39 262.6 30.6 267 61-347 125-406 (407)
36 PLN02846 digalactosyldiacylgly 100.0 1.7E-34 3.7E-39 260.7 28.2 296 30-353 79-391 (462)
37 cd03791 GT1_Glycogen_synthase_ 100.0 1.1E-34 2.4E-39 272.5 28.0 293 53-352 117-475 (476)
38 cd03798 GT1_wlbH_like This fam 100.0 6.5E-34 1.4E-38 258.9 31.8 289 49-353 77-376 (377)
39 cd04955 GT1_like_6 This family 100.0 1.5E-33 3.2E-38 256.3 33.1 272 61-352 84-363 (363)
40 cd03805 GT1_ALG2_like This fam 100.0 1.6E-34 3.5E-39 265.3 26.7 277 59-346 90-392 (392)
41 cd03807 GT1_WbnK_like This fam 100.0 3.9E-34 8.4E-39 259.6 28.9 288 49-352 66-365 (365)
42 TIGR02470 sucr_synth sucrose s 100.0 7.6E-34 1.7E-38 268.6 31.7 283 62-348 384-743 (784)
43 cd04951 GT1_WbdM_like This fam 100.0 1.2E-33 2.6E-38 256.6 30.5 281 52-352 68-359 (360)
44 cd03817 GT1_UGDG_like This fam 100.0 1.3E-33 2.7E-38 257.2 30.3 294 48-353 69-373 (374)
45 PRK09922 UDP-D-galactose:(gluc 100.0 7.8E-34 1.7E-38 256.8 28.5 274 51-355 72-357 (359)
46 cd03794 GT1_wbuB_like This fam 100.0 7.1E-34 1.5E-38 260.3 28.3 281 60-346 96-393 (394)
47 cd03822 GT1_ecORF704_like This 100.0 4.6E-33 9.9E-38 253.1 33.0 281 50-351 63-365 (366)
48 cd03792 GT1_Trehalose_phosphor 100.0 1.2E-33 2.5E-38 257.2 28.9 271 59-353 81-371 (372)
49 cd03825 GT1_wcfI_like This fam 100.0 3.1E-33 6.8E-38 254.3 31.4 292 54-354 42-365 (365)
50 cd03823 GT1_ExpE7_like This fa 100.0 5.6E-33 1.2E-37 251.7 30.9 271 51-352 84-358 (359)
51 PLN00142 sucrose synthase 100.0 5.5E-33 1.2E-37 262.8 29.8 283 62-348 407-766 (815)
52 cd03808 GT1_cap1E_like This fa 100.0 1E-32 2.2E-37 249.6 30.1 279 51-347 68-358 (359)
53 cd03821 GT1_Bme6_like This fam 100.0 1.1E-32 2.4E-37 251.0 30.5 282 55-347 79-374 (375)
54 PHA01630 putative group 1 glyc 100.0 7.7E-33 1.7E-37 244.1 27.7 238 84-353 66-330 (331)
55 cd03812 GT1_CapH_like This fam 100.0 4.2E-33 9.2E-38 252.8 26.3 270 51-334 68-346 (358)
56 cd03804 GT1_wbaZ_like This fam 100.0 5E-33 1.1E-37 251.4 25.9 266 52-346 72-350 (351)
57 PLN02949 transferase, transfer 100.0 2.4E-32 5.2E-37 250.7 30.4 228 117-357 213-460 (463)
58 cd03820 GT1_amsD_like This fam 100.0 2.6E-32 5.6E-37 245.8 29.7 270 48-347 68-347 (348)
59 cd03806 GT1_ALG11_like This fa 100.0 6.2E-33 1.3E-37 254.4 25.5 266 60-344 104-418 (419)
60 cd03802 GT1_AviGT4_like This f 100.0 3.3E-32 7.2E-37 244.6 28.3 255 50-352 74-335 (335)
61 cd04949 GT1_gtfA_like This fam 100.0 1.9E-32 4E-37 249.7 25.8 267 61-346 97-372 (372)
62 cd03811 GT1_WabH_like This fam 100.0 2.9E-32 6.2E-37 245.9 26.6 274 48-338 66-352 (353)
63 PLN02275 transferase, transfer 100.0 1.6E-31 3.4E-36 242.1 26.6 244 59-317 96-371 (371)
64 KOG1111 N-acetylglucosaminyltr 100.0 2.1E-32 4.5E-37 228.1 14.4 285 51-358 77-371 (426)
65 PHA01633 putative glycosyl tra 100.0 5.7E-29 1.2E-33 216.6 26.6 238 87-347 70-334 (335)
66 cd03788 GT1_TPS Trehalose-6-Ph 100.0 9.1E-30 2E-34 235.2 19.3 277 63-350 131-459 (460)
67 TIGR02400 trehalose_OtsA alpha 100.0 4.1E-29 8.9E-34 228.7 22.9 287 51-350 117-454 (456)
68 cd04950 GT1_like_1 Glycosyltra 100.0 6.2E-29 1.4E-33 225.5 23.8 263 61-348 100-367 (373)
69 cd03793 GT1_Glycogen_synthase_ 100.0 1.3E-27 2.8E-32 216.9 26.2 290 61-356 146-589 (590)
70 PLN02605 monogalactosyldiacylg 100.0 1.5E-27 3.2E-32 217.0 24.6 267 52-348 89-377 (382)
71 PRK09814 beta-1,6-galactofuran 100.0 6.6E-27 1.4E-31 208.5 24.4 257 52-345 52-324 (333)
72 PLN03063 alpha,alpha-trehalose 100.0 8.8E-27 1.9E-31 226.1 22.5 295 49-356 135-480 (797)
73 PRK05749 3-deoxy-D-manno-octul 100.0 3.1E-26 6.8E-31 211.9 24.8 282 51-355 112-421 (425)
74 cd03785 GT1_MurG MurG is an N- 100.0 5.1E-26 1.1E-30 205.6 24.9 256 52-344 78-349 (350)
75 PRK00726 murG undecaprenyldiph 99.9 7.2E-26 1.6E-30 204.9 23.9 263 50-348 78-353 (357)
76 PRK13609 diacylglycerol glucos 99.9 7.8E-26 1.7E-30 206.3 24.2 271 52-354 93-372 (380)
77 PRK13608 diacylglycerol glucos 99.9 2.2E-25 4.7E-30 203.1 23.9 272 52-355 93-373 (391)
78 PRK14501 putative bifunctional 99.9 1.8E-25 3.9E-30 217.7 19.1 291 51-356 123-465 (726)
79 PF00534 Glycos_transf_1: Glyc 99.9 8.3E-25 1.8E-29 176.9 15.2 153 178-333 11-172 (172)
80 TIGR01133 murG undecaprenyldip 99.9 7.9E-24 1.7E-28 191.2 22.4 256 51-344 78-346 (348)
81 COG0297 GlgA Glycogen synthase 99.9 6.9E-23 1.5E-27 185.6 26.4 292 62-356 129-480 (487)
82 TIGR02398 gluc_glyc_Psyn gluco 99.9 8.9E-23 1.9E-27 185.8 22.2 278 65-353 134-483 (487)
83 TIGR00236 wecB UDP-N-acetylglu 99.9 4.4E-22 9.5E-27 180.6 21.1 275 51-346 74-361 (365)
84 cd03786 GT1_UDP-GlcNAc_2-Epime 99.9 1.1E-21 2.4E-26 178.2 20.7 259 49-327 74-345 (363)
85 PLN03064 alpha,alpha-trehalose 99.9 6.4E-21 1.4E-25 184.4 20.7 292 51-354 221-563 (934)
86 cd01635 Glycosyltransferase_GT 99.9 3.6E-20 7.9E-25 156.8 21.6 182 51-301 39-229 (229)
87 PRK00025 lpxB lipid-A-disaccha 99.9 4.1E-20 8.9E-25 168.9 23.4 267 50-347 72-368 (380)
88 KOG0853 Glycosyltransferase [C 99.9 1.1E-19 2.4E-24 162.3 21.5 283 62-352 144-466 (495)
89 COG0438 RfaG Glycosyltransfera 99.9 1.7E-18 3.6E-23 156.4 28.9 285 57-355 76-378 (381)
90 KOG1387 Glycosyltransferase [C 99.8 6.6E-19 1.4E-23 146.9 23.3 283 56-355 143-460 (465)
91 KOG2941 Beta-1,4-mannosyltrans 99.8 3E-18 6.5E-23 143.1 23.6 282 57-346 97-435 (444)
92 TIGR02094 more_P_ylases alpha- 99.8 4.7E-17 1E-21 153.0 24.7 286 62-351 160-599 (601)
93 PF13692 Glyco_trans_1_4: Glyc 99.8 7.1E-19 1.5E-23 136.1 9.4 127 183-319 3-135 (135)
94 TIGR00215 lpxB lipid-A-disacch 99.7 4E-16 8.8E-21 141.5 21.5 259 50-337 76-369 (385)
95 TIGR03713 acc_sec_asp1 accesso 99.7 4.5E-16 9.7E-21 144.7 20.3 204 121-347 269-516 (519)
96 PF00982 Glyco_transf_20: Glyc 99.7 2.8E-16 6.2E-21 143.8 16.7 278 63-350 141-472 (474)
97 PRK10117 trehalose-6-phosphate 99.7 1.2E-15 2.7E-20 137.8 19.9 276 65-351 125-452 (474)
98 COG0707 MurG UDP-N-acetylgluco 99.7 1.9E-14 4.1E-19 127.3 23.6 259 51-346 79-351 (357)
99 COG0380 OtsA Trehalose-6-phosp 99.7 1.1E-14 2.4E-19 131.0 21.8 293 47-352 133-479 (486)
100 PF05693 Glycogen_syn: Glycoge 99.7 7.1E-15 1.5E-19 133.6 18.6 242 115-359 212-587 (633)
101 cd04299 GT1_Glycogen_Phosphory 99.7 5.6E-14 1.2E-18 134.8 25.0 294 62-359 247-696 (778)
102 TIGR02919 accessory Sec system 99.6 2.5E-13 5.4E-18 123.5 25.2 192 123-339 238-431 (438)
103 PLN02205 alpha,alpha-trehalose 99.6 8.3E-14 1.8E-18 136.2 22.8 278 65-353 203-552 (854)
104 PF13524 Glyco_trans_1_2: Glyc 99.6 3.5E-14 7.5E-19 101.5 9.8 90 253-347 1-91 (92)
105 PRK12446 undecaprenyldiphospho 99.6 2.1E-12 4.6E-17 115.6 23.4 236 52-324 80-330 (352)
106 TIGR03492 conserved hypothetic 99.5 1E-11 2.2E-16 112.9 24.4 266 53-346 81-392 (396)
107 TIGR03568 NeuC_NnaA UDP-N-acet 99.5 2.4E-11 5.1E-16 109.5 24.1 267 51-347 81-362 (365)
108 COG1519 KdtA 3-deoxy-D-manno-o 99.4 1.4E-10 3E-15 101.6 21.7 267 51-336 111-403 (419)
109 PF02684 LpxB: Lipid-A-disacch 99.3 1E-10 2.2E-15 103.8 17.8 256 47-328 66-349 (373)
110 PF02350 Epimerase_2: UDP-N-ac 99.3 9.4E-11 2E-15 104.5 15.4 275 51-347 55-342 (346)
111 COG0763 LpxB Lipid A disacchar 99.3 3.8E-10 8.2E-15 97.8 18.3 263 48-333 70-358 (381)
112 COG0381 WecB UDP-N-acetylgluco 99.3 1.4E-09 3.1E-14 94.6 21.5 275 49-347 78-365 (383)
113 PRK01021 lpxB lipid-A-disaccha 99.3 8.8E-10 1.9E-14 102.1 20.1 261 49-336 296-588 (608)
114 PF13439 Glyco_transf_4: Glyco 99.2 1.6E-11 3.4E-16 99.4 6.5 114 45-162 62-176 (177)
115 COG4641 Uncharacterized protei 99.2 1.9E-09 4.1E-14 92.9 18.2 277 54-355 68-363 (373)
116 PF13579 Glyco_trans_4_4: Glyc 99.2 7.6E-11 1.6E-15 93.6 8.4 114 37-156 45-160 (160)
117 PF13528 Glyco_trans_1_3: Glyc 99.1 3.1E-09 6.8E-14 94.7 16.7 226 52-316 83-317 (318)
118 cd03784 GT1_Gtf_like This fami 99.1 5E-08 1.1E-12 90.0 22.1 149 180-344 238-396 (401)
119 TIGR00661 MJ1255 conserved hyp 99.1 2.1E-08 4.5E-13 89.3 18.8 229 51-320 81-315 (321)
120 TIGR01426 MGT glycosyltransfer 99.0 1.1E-07 2.4E-12 87.4 23.6 155 181-347 225-387 (392)
121 TIGR03590 PseG pseudaminic aci 99.0 2.5E-08 5.5E-13 86.5 18.0 196 53-283 70-269 (279)
122 PF07429 Glyco_transf_56: 4-al 99.0 6.3E-07 1.4E-11 77.0 22.6 223 52-289 67-304 (360)
123 PRK02797 4-alpha-L-fucosyltran 98.9 3.6E-07 7.9E-12 77.3 18.9 273 51-355 27-318 (322)
124 PF13844 Glyco_transf_41: Glyc 98.8 1.9E-07 4.1E-12 84.9 16.3 172 179-354 282-467 (468)
125 PF04007 DUF354: Protein of un 98.8 4.4E-07 9.5E-12 79.8 17.5 228 51-317 71-308 (335)
126 COG3914 Spy Predicted O-linked 98.7 8.8E-06 1.9E-10 74.2 22.4 274 52-357 324-617 (620)
127 PF04464 Glyphos_transf: CDP-G 98.7 7.3E-07 1.6E-11 81.2 15.2 270 64-350 79-367 (369)
128 PRK14089 ipid-A-disaccharide s 98.6 8E-07 1.7E-11 78.8 13.3 179 62-280 75-260 (347)
129 PF13477 Glyco_trans_4_2: Glyc 98.5 4.4E-07 9.5E-12 70.2 8.0 76 52-132 63-139 (139)
130 COG1817 Uncharacterized protei 98.5 9.7E-06 2.1E-10 68.3 16.0 231 52-321 73-316 (346)
131 COG1819 Glycosyl transferases, 98.4 1.5E-05 3.2E-10 73.0 16.7 152 181-346 237-395 (406)
132 PHA03392 egt ecdysteroid UDP-g 98.4 1.9E-05 4.2E-10 74.3 16.0 138 182-334 297-447 (507)
133 PRK10017 colanic acid biosynth 98.3 0.0024 5.2E-08 58.8 27.9 251 54-326 110-399 (426)
134 KOG3742 Glycogen synthase [Car 98.3 8.8E-06 1.9E-10 71.6 10.5 104 243-347 493-607 (692)
135 COG3980 spsG Spore coat polysa 98.2 6.1E-05 1.3E-09 62.7 13.0 139 181-330 158-304 (318)
136 PF09314 DUF1972: Domain of un 98.2 1.5E-05 3.3E-10 63.5 9.3 92 63-158 92-185 (185)
137 PF04101 Glyco_tran_28_C: Glyc 98.1 2.1E-07 4.6E-12 74.4 -1.9 110 210-329 32-154 (167)
138 PLN02670 transferase, transfer 98.1 0.00013 2.8E-09 67.8 15.3 163 180-352 277-465 (472)
139 PLN02448 UDP-glycosyltransfera 97.9 0.00079 1.7E-08 63.0 17.3 143 180-333 273-430 (459)
140 PLN03004 UDP-glycosyltransfera 97.9 0.00026 5.5E-09 65.5 13.8 135 179-321 268-426 (451)
141 KOG1050 Trehalose-6-phosphate 97.9 0.00082 1.8E-08 65.2 17.1 281 54-346 133-468 (732)
142 PLN02764 glycosyltransferase f 97.8 0.00053 1.1E-08 63.3 13.7 147 179-334 255-423 (453)
143 PF11440 AGT: DNA alpha-glucos 97.8 0.0066 1.4E-07 50.7 18.3 289 12-319 12-353 (355)
144 PLN02562 UDP-glycosyltransfera 97.8 0.00079 1.7E-08 62.6 14.7 135 181-325 273-419 (448)
145 PLN00164 glucosyltransferase; 97.8 0.0036 7.8E-08 58.8 19.0 146 180-333 271-446 (480)
146 PLN02208 glycosyltransferase f 97.8 0.0049 1.1E-07 57.2 19.2 205 121-334 190-417 (442)
147 PLN03007 UDP-glucosyltransfera 97.7 0.0026 5.6E-08 59.9 16.9 133 180-320 284-441 (482)
148 COG4671 Predicted glycosyl tra 97.7 0.0032 6.9E-08 54.6 15.1 249 55-319 98-365 (400)
149 PLN02992 coniferyl-alcohol glu 97.7 0.0096 2.1E-07 55.7 19.6 135 179-320 261-428 (481)
150 PLN02210 UDP-glucosyl transfer 97.7 0.002 4.3E-08 60.1 15.2 132 181-321 269-417 (456)
151 PF00201 UDPGT: UDP-glucoronos 97.6 0.00017 3.7E-09 68.6 8.1 130 180-323 275-413 (500)
152 PLN02863 UDP-glucoronosyl/UDP- 97.6 0.0024 5.2E-08 59.8 15.0 129 180-318 282-432 (477)
153 PLN00414 glycosyltransferase f 97.6 0.0019 4.2E-08 59.9 14.0 149 178-336 249-420 (446)
154 PLN02554 UDP-glycosyltransfera 97.6 0.0099 2.1E-07 56.0 18.7 131 181-321 274-443 (481)
155 PF06925 MGDG_synth: Monogalac 97.5 0.00073 1.6E-08 54.0 8.8 91 48-155 74-167 (169)
156 PLN02410 UDP-glucoronosyl/UDP- 97.5 0.0014 3E-08 60.9 11.7 142 179-333 262-423 (451)
157 PF08323 Glyco_transf_5: Starc 97.5 0.00017 3.7E-09 61.4 5.2 90 52-142 120-233 (245)
158 PLN02173 UDP-glucosyl transfer 97.5 0.0054 1.2E-07 56.9 15.3 144 180-333 263-421 (449)
159 TIGR03609 S_layer_CsaB polysac 97.4 0.072 1.6E-06 46.9 20.8 201 52-281 55-276 (298)
160 PLN02167 UDP-glycosyltransfera 97.3 0.0052 1.1E-07 57.8 13.6 129 180-320 279-435 (475)
161 PLN02207 UDP-glycosyltransfera 97.3 0.025 5.3E-07 52.9 17.7 187 122-318 209-425 (468)
162 PLN02152 indole-3-acetate beta 97.3 0.0093 2E-07 55.4 14.2 132 180-320 260-418 (455)
163 COG0859 RfaF ADP-heptose:LPS h 97.3 0.032 7E-07 50.0 17.3 95 182-281 176-277 (334)
164 PF06258 Mito_fiss_Elm1: Mitoc 97.2 0.039 8.5E-07 48.6 16.9 190 58-284 52-259 (311)
165 PF01075 Glyco_transf_9: Glyco 97.2 0.013 2.9E-07 50.0 13.2 97 180-281 104-209 (247)
166 COG3660 Predicted nucleoside-d 97.1 0.12 2.6E-06 43.1 17.5 191 61-282 68-273 (329)
167 cd03789 GT1_LPS_heptosyltransf 97.1 0.038 8.3E-07 48.2 15.9 81 197-283 142-226 (279)
168 PLN03015 UDP-glucosyl transfer 97.1 0.081 1.7E-06 49.4 18.6 147 179-333 265-441 (470)
169 PLN02555 limonoid glucosyltran 97.0 0.024 5.1E-07 53.2 14.1 142 181-333 277-442 (480)
170 PLN02534 UDP-glycosyltransfera 97.0 0.047 1E-06 51.3 16.0 147 179-333 281-459 (491)
171 TIGR02195 heptsyl_trn_II lipop 96.9 0.072 1.6E-06 47.8 16.2 98 181-283 174-279 (334)
172 PF05159 Capsule_synth: Capsul 96.9 0.19 4.1E-06 43.6 17.9 97 180-283 115-227 (269)
173 PF12000 Glyco_trans_4_3: Gkyc 96.8 0.0038 8.3E-08 49.2 6.3 96 62-162 65-170 (171)
174 PRK10916 ADP-heptose:LPS hepto 96.8 0.4 8.6E-06 43.3 20.8 97 181-282 180-288 (348)
175 PF15024 Glyco_transf_18: Glyc 96.7 0.0073 1.6E-07 56.1 7.8 149 183-347 278-450 (559)
176 PF10933 DUF2827: Protein of u 96.5 0.16 3.5E-06 44.7 14.3 250 63-343 73-354 (364)
177 PF11997 DUF3492: Domain of un 96.4 0.012 2.7E-07 50.5 7.2 81 63-143 172-264 (268)
178 PF04230 PS_pyruv_trans: Polys 96.4 0.52 1.1E-05 40.6 17.5 181 77-282 89-284 (286)
179 PF08288 PIGA: PIGA (GPI ancho 96.3 0.0077 1.7E-07 40.9 4.3 67 32-98 14-86 (90)
180 PF04413 Glycos_transf_N: 3-De 96.2 0.038 8.2E-07 44.7 8.5 97 51-155 83-179 (186)
181 COG0058 GlgP Glucan phosphoryl 96.2 0.08 1.7E-06 51.4 11.7 122 180-304 485-631 (750)
182 TIGR02201 heptsyl_trn_III lipo 96.0 0.64 1.4E-05 41.9 16.7 96 181-281 181-286 (344)
183 COG1887 TagB Putative glycosyl 96.0 0.58 1.3E-05 42.7 16.1 222 121-351 145-385 (388)
184 TIGR02193 heptsyl_trn_I lipopo 95.8 0.38 8.2E-06 42.9 14.1 97 180-281 178-280 (319)
185 PF03016 Exostosin: Exostosin 95.8 0.094 2E-06 46.3 10.1 70 242-314 228-300 (302)
186 KOG1192 UDP-glucuronosyl and U 95.8 0.24 5.1E-06 47.2 13.4 144 182-331 278-434 (496)
187 PRK10964 ADP-heptose:LPS hepto 95.7 0.53 1.1E-05 42.0 14.4 97 182-283 179-281 (322)
188 PF00343 Phosphorylase: Carboh 95.6 0.14 3E-06 49.6 10.8 186 122-309 329-601 (713)
189 cd04300 GT1_Glycogen_Phosphory 95.5 0.13 2.8E-06 50.7 10.2 128 179-310 527-688 (797)
190 PRK14986 glycogen phosphorylas 95.4 0.13 2.9E-06 50.6 10.1 130 179-312 540-703 (815)
191 PRK10422 lipopolysaccharide co 95.1 0.87 1.9E-05 41.2 14.1 98 181-283 183-290 (352)
192 PRK14985 maltodextrin phosphor 95.1 0.1 2.2E-06 51.2 8.3 127 179-309 526-686 (798)
193 PF08660 Alg14: Oligosaccharid 95.1 0.057 1.2E-06 42.9 5.6 75 52-139 81-161 (170)
194 TIGR02093 P_ylase glycogen/sta 95.0 0.15 3.2E-06 50.1 8.9 128 179-310 524-685 (794)
195 KOG3349 Predicted glycosyltran 94.9 0.2 4.4E-06 38.0 7.6 90 183-280 5-106 (170)
196 KOG4626 O-linked N-acetylgluco 94.6 0.63 1.4E-05 44.0 11.6 178 179-359 756-946 (966)
197 COG2327 WcaK Polysaccharide py 94.3 4 8.6E-05 36.9 20.3 236 63-321 89-352 (385)
198 PF10087 DUF2325: Uncharacteri 93.6 0.2 4.3E-06 35.6 5.2 76 212-287 2-88 (97)
199 COG0373 HemA Glutamyl-tRNA red 91.7 11 0.00023 34.7 15.6 140 181-334 177-319 (414)
200 PF12038 DUF3524: Domain of un 91.2 2.8 6.1E-05 32.8 9.0 85 56-142 52-137 (168)
201 PF00862 Sucrose_synth: Sucros 90.1 0.73 1.6E-05 42.6 5.8 75 62-137 400-481 (550)
202 PF01113 DapB_N: Dihydrodipico 89.7 0.4 8.6E-06 35.9 3.3 86 197-285 13-102 (124)
203 TIGR03646 YtoQ_fam YtoQ family 89.5 1.9 4.1E-05 31.9 6.3 70 244-316 69-142 (144)
204 PF11071 DUF2872: Protein of u 88.4 2.5 5.4E-05 31.3 6.3 71 244-317 66-140 (141)
205 PF00852 Glyco_transf_10: Glyc 88.2 3 6.6E-05 37.6 8.4 120 187-326 181-305 (349)
206 PF12996 DUF3880: DUF based on 87.7 1.4 3.1E-05 29.9 4.6 64 120-192 14-77 (79)
207 COG5017 Uncharacterized conser 87.3 5.7 0.00012 29.9 7.6 69 210-289 31-101 (161)
208 PRK06718 precorrin-2 dehydroge 87.2 15 0.00033 30.2 13.9 77 209-289 33-109 (202)
209 KOG1021 Acetylglucosaminyltran 86.5 4.1 8.9E-05 38.4 8.5 87 242-334 335-426 (464)
210 PRK00676 hemA glutamyl-tRNA re 85.7 26 0.00056 31.4 14.0 137 207-356 172-321 (338)
211 KOG2619 Fucosyltransferase [Ca 82.2 16 0.00036 32.9 9.8 127 182-327 197-327 (372)
212 PRK05562 precorrin-2 dehydroge 81.1 31 0.00068 28.8 14.0 122 209-334 48-177 (223)
213 PF10093 DUF2331: Uncharacteri 79.0 31 0.00068 31.2 10.5 91 180-278 182-286 (374)
214 PRK13940 glutamyl-tRNA reducta 78.7 56 0.0012 30.3 13.8 120 182-314 181-301 (414)
215 PF05686 Glyco_transf_90: Glyc 78.3 16 0.00035 33.6 8.9 88 262-353 225-317 (395)
216 PRK05447 1-deoxy-D-xylulose 5- 77.5 24 0.00053 32.1 9.4 84 194-281 36-122 (385)
217 smart00672 CAP10 Putative lipo 76.3 41 0.00089 28.9 10.2 89 261-353 155-248 (256)
218 PF03401 TctC: Tripartite tric 75.4 41 0.00089 29.2 10.2 140 183-328 79-241 (274)
219 PF01408 GFO_IDH_MocA: Oxidore 72.9 23 0.0005 25.8 7.2 88 184-280 2-92 (120)
220 COG1618 Predicted nucleotide k 71.0 10 0.00023 29.6 4.8 74 242-319 92-177 (179)
221 cd01020 TroA_b Metal binding p 70.8 38 0.00082 29.2 8.9 90 242-336 44-136 (264)
222 PRK05583 ribosomal protein L7A 69.2 27 0.00058 25.1 6.4 76 195-271 20-98 (104)
223 COG2204 AtoC Response regulato 69.2 48 0.001 31.2 9.5 112 211-322 6-125 (464)
224 PF12738 PTCB-BRCT: twin BRCT 69.1 21 0.00046 22.6 5.4 59 212-281 3-62 (63)
225 COG0673 MviM Predicted dehydro 69.1 33 0.00071 30.7 8.6 91 183-280 4-97 (342)
226 COG4370 Uncharacterized protei 68.8 3.9 8.5E-05 35.3 2.3 199 119-336 173-396 (412)
227 PRK00048 dihydrodipicolinate r 68.4 15 0.00033 31.5 5.9 77 200-283 17-93 (257)
228 PRK05472 redox-sensing transcr 68.3 68 0.0015 26.6 10.1 42 242-283 136-179 (213)
229 PF02670 DXP_reductoisom: 1-de 66.1 54 0.0012 24.7 8.8 95 180-280 22-120 (129)
230 PF10649 DUF2478: Protein of u 65.6 13 0.00029 29.0 4.5 37 244-280 86-129 (159)
231 TIGR03837 efp_adjacent_2 conse 65.2 1E+02 0.0022 28.0 10.2 78 195-278 193-284 (371)
232 COG4394 Uncharacterized protei 65.0 65 0.0014 27.9 8.6 79 196-279 190-281 (370)
233 COG1519 KdtA 3-deoxy-D-manno-o 64.5 1.1E+02 0.0023 28.3 10.4 99 180-281 48-153 (419)
234 PRK00994 F420-dependent methyl 60.8 1E+02 0.0022 25.9 12.2 99 185-303 7-116 (277)
235 COG4565 CitB Response regulato 59.1 70 0.0015 26.4 7.5 74 242-318 36-119 (224)
236 COG1927 Mtd Coenzyme F420-depe 58.5 1E+02 0.0022 25.2 11.9 102 184-302 6-115 (277)
237 TIGR02536 eut_hyp ethanolamine 58.4 58 0.0013 26.8 7.2 65 211-283 22-99 (207)
238 PF13241 NAD_binding_7: Putati 57.6 18 0.00039 25.9 3.8 70 209-289 30-100 (103)
239 PF01993 MTD: methylene-5,6,7, 56.6 38 0.00082 28.4 5.7 148 186-354 7-163 (276)
240 KOG2264 Exostosin EXT1L [Signa 56.6 64 0.0014 30.7 7.7 121 235-368 403-532 (907)
241 PLN02929 NADH kinase 56.4 26 0.00057 30.7 5.2 73 245-319 59-137 (301)
242 PRK10637 cysG siroheme synthas 55.9 1.8E+02 0.004 27.4 14.4 122 209-334 35-165 (457)
243 PF04392 ABC_sub_bind: ABC tra 55.9 1.4E+02 0.0031 26.1 10.4 145 121-281 56-218 (294)
244 PF01297 TroA: Periplasmic sol 55.7 47 0.001 28.4 6.7 90 243-335 40-132 (256)
245 KOG2884 26S proteasome regulat 55.2 1.2E+02 0.0026 25.1 10.5 62 251-319 168-229 (259)
246 PRK07714 hypothetical protein; 55.2 68 0.0015 22.8 6.4 75 195-270 21-98 (100)
247 cd00027 BRCT Breast Cancer Sup 54.6 51 0.0011 20.6 5.8 62 210-281 2-65 (72)
248 COG3563 KpsC Capsule polysacch 54.1 74 0.0016 29.8 7.6 88 189-284 161-254 (671)
249 PF02826 2-Hacid_dh_C: D-isome 54.0 55 0.0012 26.2 6.4 39 242-280 83-126 (178)
250 TIGR00036 dapB dihydrodipicoli 53.7 37 0.00081 29.3 5.7 80 199-283 16-101 (266)
251 TIGR02990 ectoine_eutA ectoine 53.0 1.3E+02 0.0028 25.6 8.6 48 236-284 162-216 (239)
252 TIGR01921 DAP-DH diaminopimela 52.7 1.1E+02 0.0024 27.3 8.5 89 183-282 4-92 (324)
253 cd01080 NAD_bind_m-THF_DH_Cycl 52.5 62 0.0013 25.7 6.4 61 199-260 30-97 (168)
254 TIGR00715 precor6x_red precorr 52.4 77 0.0017 27.2 7.3 74 233-317 178-255 (256)
255 TIGR01761 thiaz-red thiazoliny 52.4 73 0.0016 28.7 7.4 90 181-280 2-96 (343)
256 PRK10840 transcriptional regul 51.8 1.3E+02 0.0029 24.6 10.8 108 209-319 3-126 (216)
257 PRK10360 DNA-binding transcrip 51.2 1.2E+02 0.0026 24.0 10.6 105 211-318 3-117 (196)
258 KOG0368 Acetyl-CoA carboxylase 50.8 52 0.0011 35.5 6.8 78 194-286 123-202 (2196)
259 COG0052 RpsB Ribosomal protein 50.3 87 0.0019 26.5 6.9 33 64-97 157-189 (252)
260 PF00389 2-Hacid_dh: D-isomer 50.1 1.1E+02 0.0023 22.9 13.8 81 231-313 19-101 (133)
261 cd05213 NAD_bind_Glutamyl_tRNA 49.8 1.7E+02 0.0036 26.0 9.4 98 182-287 178-277 (311)
262 COG0745 OmpR Response regulato 49.0 1.6E+02 0.0035 24.7 9.9 108 212-319 3-118 (229)
263 PRK03743 pdxA 4-hydroxythreoni 48.5 57 0.0012 29.2 6.0 76 231-316 238-323 (332)
264 cd01016 TroA Metal binding pro 47.5 1.2E+02 0.0025 26.4 7.9 95 242-336 42-142 (276)
265 PF00072 Response_reg: Respons 47.5 97 0.0021 21.8 8.9 90 222-314 12-112 (112)
266 PRK08410 2-hydroxyacid dehydro 47.4 1.2E+02 0.0027 26.8 8.1 40 242-281 188-232 (311)
267 PRK07283 hypothetical protein; 47.2 66 0.0014 22.8 5.2 73 196-270 22-97 (98)
268 cd01019 ZnuA Zinc binding prot 47.1 1.6E+02 0.0034 25.8 8.7 94 242-336 44-162 (286)
269 PRK08057 cobalt-precorrin-6x r 47.0 1.2E+02 0.0027 25.8 7.7 74 233-317 171-247 (248)
270 PRK13761 hypothetical protein; 45.8 1.8E+02 0.0039 24.3 8.1 94 248-354 148-243 (248)
271 TIGR00243 Dxr 1-deoxy-D-xylulo 45.2 1.8E+02 0.0039 26.7 8.6 85 194-281 36-124 (389)
272 PLN02696 1-deoxy-D-xylulose-5- 44.8 2.4E+02 0.0052 26.5 9.6 83 195-281 93-180 (454)
273 PRK13302 putative L-aspartate 44.6 1.5E+02 0.0032 25.7 8.0 93 183-283 7-100 (271)
274 cd01018 ZntC Metal binding pro 44.0 1.3E+02 0.0028 25.9 7.6 93 242-336 43-153 (266)
275 COG1701 Uncharacterized protei 43.8 1.8E+02 0.004 23.9 9.1 94 249-354 152-246 (256)
276 PRK04207 glyceraldehyde-3-phos 43.5 1.9E+02 0.0042 26.1 8.8 77 199-281 15-109 (341)
277 PRK12464 1-deoxy-D-xylulose 5- 43.3 1.8E+02 0.004 26.6 8.4 95 181-281 21-117 (383)
278 TIGR01470 cysG_Nterm siroheme 43.1 1.9E+02 0.0041 23.8 15.9 122 209-334 32-162 (205)
279 cd01137 PsaA Metal binding pro 43.0 1.4E+02 0.0031 26.1 7.8 93 243-336 59-158 (287)
280 PRK10100 DNA-binding transcrip 42.9 1.1E+02 0.0024 25.4 6.7 106 210-319 11-127 (216)
281 cd01017 AdcA Metal binding pro 42.7 1.4E+02 0.0031 25.9 7.8 94 242-336 44-154 (282)
282 PF04312 DUF460: Protein of un 42.6 44 0.00095 25.3 3.8 33 257-289 59-92 (138)
283 COG1648 CysG Siroheme synthase 41.8 2E+02 0.0044 23.8 11.7 139 209-351 35-183 (210)
284 PF01488 Shikimate_DH: Shikima 41.4 80 0.0017 23.8 5.3 96 181-283 11-109 (135)
285 COG0111 SerA Phosphoglycerate 41.4 1.6E+02 0.0034 26.4 7.8 37 242-278 189-230 (324)
286 TIGR01012 Sa_S2_E_A ribosomal 41.3 2E+02 0.0043 23.6 8.7 83 205-289 57-147 (196)
287 COG0803 LraI ABC-type metal io 41.0 2.6E+02 0.0055 24.7 9.3 93 244-336 75-174 (303)
288 PRK03371 pdxA 4-hydroxythreoni 40.6 1.2E+02 0.0026 27.1 6.8 76 231-316 237-322 (326)
289 PRK05282 (alpha)-aspartyl dipe 40.5 2.3E+02 0.0049 24.0 8.3 43 242-284 71-123 (233)
290 KOG0121 Nuclear cap-binding pr 40.5 82 0.0018 23.6 4.8 60 184-249 37-96 (153)
291 PF04166 PdxA: Pyridoxal phosp 40.3 36 0.00078 29.9 3.5 99 208-316 175-297 (298)
292 TIGR00557 pdxA 4-hydroxythreon 40.3 85 0.0018 27.9 5.8 76 231-316 231-316 (320)
293 COG4109 Predicted transcriptio 40.1 1E+02 0.0022 27.6 6.1 102 208-316 113-219 (432)
294 PF11238 DUF3039: Protein of u 40.1 25 0.00054 22.0 1.8 17 264-280 14-30 (58)
295 PTZ00182 3-methyl-2-oxobutanat 40.0 1.5E+02 0.0033 26.9 7.6 42 233-274 267-311 (355)
296 PRK13837 two-component VirA-li 39.7 2.5E+02 0.0053 29.0 10.0 104 210-318 698-813 (828)
297 PRK05749 3-deoxy-D-manno-octul 39.7 3.1E+02 0.0068 25.4 10.9 100 181-281 50-154 (425)
298 PRK13900 type IV secretion sys 39.4 1E+02 0.0023 27.6 6.4 48 52-99 224-272 (332)
299 PF02571 CbiJ: Precorrin-6x re 39.0 1.3E+02 0.0029 25.6 6.7 71 233-314 175-248 (249)
300 PF13263 PHP_C: PHP-associated 38.8 15 0.00032 22.9 0.7 41 269-314 10-52 (56)
301 PRK06719 precorrin-2 dehydroge 38.7 1.9E+02 0.0041 22.6 9.5 41 248-288 68-108 (157)
302 PLN02527 aspartate carbamoyltr 38.6 2.8E+02 0.0061 24.6 13.1 134 115-259 87-227 (306)
303 PTZ00254 40S ribosomal protein 38.2 2.1E+02 0.0046 24.4 7.6 41 248-289 116-157 (249)
304 COG4566 TtrR Response regulato 38.2 2.2E+02 0.0048 23.2 7.9 101 220-320 16-123 (202)
305 PRK05312 pdxA 4-hydroxythreoni 38.0 1E+02 0.0023 27.6 6.0 75 232-316 244-328 (336)
306 KOG3040 Predicted sugar phosph 37.8 2.4E+02 0.0051 23.4 10.0 169 125-319 69-259 (262)
307 TIGR03787 marine_sort_RR prote 37.7 2.2E+02 0.0049 23.1 9.5 92 224-318 16-119 (227)
308 PF03435 Saccharop_dh: Sacchar 37.0 1.1E+02 0.0024 28.0 6.5 80 199-280 12-97 (386)
309 PRK06843 inosine 5-monophospha 36.7 80 0.0017 29.2 5.3 67 248-317 10-88 (404)
310 COG1712 Predicted dinucleotide 36.6 1.1E+02 0.0024 25.6 5.5 81 200-286 15-96 (255)
311 PRK10161 transcriptional regul 36.6 2.4E+02 0.0051 23.1 9.9 105 211-318 4-121 (229)
312 PF07085 DRTGG: DRTGG domain; 36.5 67 0.0015 22.9 4.0 18 264-281 75-92 (105)
313 PF04016 DUF364: Domain of unk 36.3 1.3E+02 0.0029 23.2 5.8 72 240-315 52-130 (147)
314 KOG0780 Signal recognition par 36.2 3.5E+02 0.0076 25.0 11.1 158 184-347 156-337 (483)
315 TIGR02154 PhoB phosphate regul 36.1 2.3E+02 0.005 22.9 10.1 105 211-318 4-121 (226)
316 TIGR02853 spore_dpaA dipicolin 36.1 1.7E+02 0.0036 25.7 7.0 39 240-278 199-237 (287)
317 PRK09545 znuA high-affinity zi 35.5 2.9E+02 0.0063 24.5 8.6 40 297-336 145-186 (311)
318 PF05014 Nuc_deoxyrib_tr: Nucl 35.5 35 0.00076 24.8 2.4 39 245-283 56-98 (113)
319 PF06345 Drf_DAD: DRF Autoregu 35.5 32 0.0007 14.5 1.2 11 265-275 4-14 (15)
320 PF05822 UMPH-1: Pyrimidine 5' 35.4 2.2E+02 0.0048 24.3 7.3 106 146-270 130-244 (246)
321 PRK13303 L-aspartate dehydroge 35.3 1.7E+02 0.0036 25.3 6.9 79 199-283 15-94 (265)
322 PRK00232 pdxA 4-hydroxythreoni 35.3 1.1E+02 0.0024 27.4 5.8 76 231-316 238-323 (332)
323 PF04413 Glycos_transf_N: 3-De 34.5 2.5E+02 0.0054 22.7 8.6 99 182-281 22-125 (186)
324 PRK11579 putative oxidoreducta 34.4 2.1E+02 0.0046 25.7 7.8 89 182-280 4-94 (346)
325 PF00391 PEP-utilizers: PEP-ut 34.4 1E+02 0.0022 20.7 4.4 48 233-281 13-60 (80)
326 PRK10643 DNA-binding transcrip 34.2 2.5E+02 0.0054 22.6 9.8 108 211-318 2-117 (222)
327 PF03447 NAD_binding_3: Homose 34.0 39 0.00084 24.7 2.5 43 243-285 50-94 (117)
328 KOG2555 AICAR transformylase/I 33.8 1.2E+02 0.0025 27.9 5.6 75 210-288 487-565 (588)
329 PF02006 DUF137: Protein of un 33.6 2.2E+02 0.0047 22.6 6.3 85 249-346 88-174 (178)
330 TIGR02130 dapB_plant dihydrodi 33.4 1.8E+02 0.0038 25.3 6.5 106 197-304 13-124 (275)
331 cd05565 PTS_IIB_lactose PTS_II 33.3 1.3E+02 0.0028 21.4 4.8 70 213-282 5-80 (99)
332 PF01012 ETF: Electron transfe 33.1 1E+02 0.0022 24.1 4.9 48 50-97 77-124 (164)
333 COG2085 Predicted dinucleotide 32.8 2.8E+02 0.0061 23.0 7.3 69 210-283 25-95 (211)
334 cd01130 VirB11-like_ATPase Typ 32.7 1.7E+02 0.0037 23.5 6.2 49 52-100 89-138 (186)
335 PF00533 BRCT: BRCA1 C Terminu 32.6 1.4E+02 0.0031 19.3 5.1 64 208-280 7-71 (78)
336 PRK14189 bifunctional 5,10-met 32.4 3E+02 0.0066 24.1 7.9 78 198-278 143-227 (285)
337 PRK13304 L-aspartate dehydroge 32.3 3.2E+02 0.0069 23.5 8.2 79 200-284 16-95 (265)
338 PF01408 GFO_IDH_MocA: Oxidore 32.3 1.1E+02 0.0023 22.2 4.7 42 51-92 50-91 (120)
339 PRK07579 hypothetical protein; 32.2 1.2E+02 0.0026 25.8 5.3 33 184-218 3-35 (245)
340 PHA00451 protein kinase 32.2 1.9E+02 0.0042 24.9 6.3 39 272-318 204-242 (362)
341 COG3613 Nucleoside 2-deoxyribo 32.1 92 0.002 24.7 4.2 38 245-282 63-106 (172)
342 PF07801 DUF1647: Protein of u 31.6 2.4E+02 0.0052 21.7 6.8 57 181-237 60-118 (142)
343 PF07355 GRDB: Glycine/sarcosi 31.6 1.7E+02 0.0038 26.3 6.3 49 51-99 68-123 (349)
344 PRK13894 conjugal transfer ATP 31.5 1.9E+02 0.0042 25.8 6.8 49 52-100 208-257 (319)
345 COG0062 Uncharacterized conser 31.4 2.3E+02 0.005 23.3 6.6 100 181-284 49-161 (203)
346 PRK09468 ompR osmolarity respo 31.3 3E+02 0.0065 22.7 10.4 109 210-318 6-122 (239)
347 KOG2756 Predicted Mg2+-depende 31.1 3.5E+02 0.0076 23.4 7.9 44 51-96 118-161 (349)
348 cd03146 GAT1_Peptidase_E Type 31.0 3E+02 0.0066 22.7 10.3 44 241-284 71-124 (212)
349 TIGR00730 conserved hypothetic 31.0 2.7E+02 0.0058 22.4 6.9 41 242-284 88-136 (178)
350 PRK01909 pdxA 4-hydroxythreoni 30.7 1.5E+02 0.0032 26.6 5.8 76 231-316 234-319 (329)
351 PRK02746 pdxA 4-hydroxythreoni 30.7 3.7E+02 0.0079 24.3 8.2 75 232-316 244-336 (345)
352 COG2984 ABC-type uncharacteriz 30.5 1.8E+02 0.0038 25.8 6.1 150 119-285 83-250 (322)
353 COG3854 SpoIIIAA ncharacterize 30.4 1.3E+02 0.0028 25.5 5.0 48 53-100 208-256 (308)
354 TIGR02782 TrbB_P P-type conjug 30.3 1.6E+02 0.0036 25.9 6.1 50 51-100 192-242 (299)
355 PRK11891 aspartate carbamoyltr 29.6 2.7E+02 0.0059 26.0 7.5 135 114-259 172-317 (429)
356 PLN02819 lysine-ketoglutarate 29.4 4.4E+02 0.0096 28.1 9.7 69 212-281 608-679 (1042)
357 PRK08192 aspartate carbamoyltr 29.3 3.1E+02 0.0067 24.7 7.7 137 114-259 90-235 (338)
358 TIGR01851 argC_other N-acetyl- 29.3 1.3E+02 0.0028 26.7 5.2 62 198-278 15-77 (310)
359 cd01715 ETF_alpha The electron 29.3 1.2E+02 0.0026 23.9 4.7 48 50-97 70-117 (168)
360 TIGR03609 S_layer_CsaB polysac 29.2 3.9E+02 0.0084 23.3 11.0 83 195-282 12-107 (298)
361 PRK05339 PEP synthetase regula 29.0 2.5E+02 0.0055 24.3 6.7 32 246-278 139-171 (269)
362 cd01453 vWA_transcription_fact 29.0 3E+02 0.0066 22.0 7.7 54 196-250 124-177 (183)
363 PF14359 DUF4406: Domain of un 29.0 1.2E+02 0.0027 21.1 4.1 34 245-278 54-90 (92)
364 PRK10816 DNA-binding transcrip 28.8 3.2E+02 0.0069 22.2 9.7 108 211-318 2-117 (223)
365 COG0036 Rpe Pentose-5-phosphat 28.7 3.5E+02 0.0075 22.6 12.2 71 51-133 17-93 (220)
366 PRK14852 hypothetical protein; 28.7 3.3E+02 0.0072 28.6 8.5 54 232-287 403-462 (989)
367 cd01018 ZntC Metal binding pro 28.6 2.3E+02 0.0051 24.3 6.8 55 128-189 5-59 (266)
368 PLN02683 pyruvate dehydrogenas 28.6 2.1E+02 0.0046 26.0 6.6 81 233-318 262-351 (356)
369 PLN02928 oxidoreductase family 28.3 2E+02 0.0044 26.0 6.5 39 241-279 217-260 (347)
370 COG3473 Maleate cis-trans isom 28.2 3.5E+02 0.0075 22.5 8.5 50 236-285 160-215 (238)
371 PRK06487 glycerate dehydrogena 28.2 2.2E+02 0.0047 25.4 6.6 39 242-280 189-232 (317)
372 TIGR00725 conserved hypothetic 27.9 1.1E+02 0.0025 23.9 4.2 40 242-283 83-124 (159)
373 TIGR01850 argC N-acetyl-gamma- 27.8 1.3E+02 0.0029 27.2 5.2 81 199-279 15-97 (346)
374 PRK15469 ghrA bifunctional gly 27.8 1.4E+02 0.0031 26.5 5.3 40 241-280 181-225 (312)
375 TIGR00075 hypD hydrogenase exp 27.6 1.5E+02 0.0032 26.9 5.2 85 197-281 124-225 (369)
376 TIGR00853 pts-lac PTS system, 27.6 1.3E+02 0.0029 21.1 4.1 71 213-284 8-85 (95)
377 PRK06932 glycerate dehydrogena 27.5 2.5E+02 0.0054 25.0 6.8 40 242-281 189-233 (314)
378 PF07302 AroM: AroM protein; 27.5 1.7E+02 0.0036 24.5 5.2 41 52-92 167-207 (221)
379 PRK14350 ligA NAD-dependent DN 26.8 1.8E+02 0.0039 29.0 6.2 27 250-279 631-657 (669)
380 PRK08328 hypothetical protein; 26.7 2.9E+02 0.0062 23.2 6.8 46 240-286 108-155 (231)
381 PRK09190 hypothetical protein; 26.6 3.4E+02 0.0073 22.7 6.9 77 195-272 114-199 (220)
382 TIGR00035 asp_race aspartate r 26.6 3.1E+02 0.0068 22.9 7.0 92 184-280 3-104 (229)
383 KOG1111 N-acetylglucosaminyltr 26.6 93 0.002 28.1 3.8 85 182-269 226-312 (426)
384 PRK11475 DNA-binding transcrip 26.4 3.7E+02 0.008 22.1 9.3 83 237-319 22-115 (207)
385 PRK15438 erythronate-4-phospha 26.4 2.3E+02 0.005 26.0 6.5 14 242-255 159-172 (378)
386 cd03129 GAT1_Peptidase_E_like 26.2 3.7E+02 0.008 22.0 8.6 45 240-284 70-124 (210)
387 PF11264 ThylakoidFormat: Thyl 25.9 1.7E+02 0.0037 24.3 5.0 45 302-346 64-109 (216)
388 PRK09212 pyruvate dehydrogenas 25.5 3E+02 0.0065 24.6 7.0 42 233-274 235-279 (327)
389 cd01129 PulE-GspE PulE/GspE Th 25.4 2.3E+02 0.0051 24.4 6.1 47 52-98 138-185 (264)
390 COG0439 AccC Biotin carboxylas 25.0 6E+02 0.013 24.1 10.1 111 194-317 60-185 (449)
391 PRK04020 rps2P 30S ribosomal p 24.9 4E+02 0.0086 22.0 9.7 81 207-289 65-153 (204)
392 PF03618 Kinase-PPPase: Kinase 24.9 3.4E+02 0.0074 23.3 6.8 33 245-278 132-165 (255)
393 PRK08300 acetaldehyde dehydrog 24.9 3.5E+02 0.0077 23.9 7.1 92 182-281 4-101 (302)
394 CHL00148 orf27 Ycf27; Reviewed 24.8 3.9E+02 0.0084 21.9 10.3 107 209-318 6-122 (240)
395 cd01020 TroA_b Metal binding p 24.8 2.9E+02 0.0063 23.7 6.6 55 128-189 5-60 (264)
396 TIGR03855 NAD_NadX aspartate d 24.8 1.9E+02 0.004 24.4 5.2 59 221-283 12-70 (229)
397 PRK09581 pleD response regulat 24.8 5.6E+02 0.012 23.7 11.5 105 211-318 4-121 (457)
398 PRK13435 response regulator; P 24.6 3E+02 0.0065 20.5 9.8 106 209-317 5-119 (145)
399 PRK06728 aspartate-semialdehyd 24.6 3.1E+02 0.0067 24.9 6.8 129 183-328 6-138 (347)
400 PRK10017 colanic acid biosynth 24.4 5.9E+02 0.013 23.9 10.8 41 242-282 109-156 (426)
401 PTZ00408 NAD-dependent deacety 24.3 4.5E+02 0.0097 22.4 9.7 55 230-284 150-209 (242)
402 cd01750 GATase1_CobQ Type 1 gl 24.2 2E+02 0.0043 23.3 5.2 34 248-281 35-79 (194)
403 cd05776 DNA_polB_alpha_exo ina 24.1 1.2E+02 0.0027 25.5 4.1 39 51-89 85-124 (234)
404 PRK11173 two-component respons 24.1 4.1E+02 0.0089 21.9 9.5 108 211-318 5-119 (237)
405 cd01985 ETF The electron trans 23.9 1.4E+02 0.0031 23.8 4.3 48 50-97 78-125 (181)
406 TIGR01035 hemA glutamyl-tRNA r 23.9 6E+02 0.013 23.7 15.1 99 182-288 180-282 (417)
407 TIGR03819 heli_sec_ATPase heli 23.8 3.2E+02 0.0069 24.7 6.8 48 52-99 242-290 (340)
408 PF09949 DUF2183: Uncharacteri 23.8 1E+02 0.0022 22.0 3.0 22 197-218 52-73 (100)
409 TIGR01544 HAD-SF-IE haloacid d 23.7 3.6E+02 0.0079 23.5 6.8 76 194-269 192-275 (277)
410 COG3580 Uncharacterized protei 23.7 5.2E+02 0.011 22.9 9.0 97 181-280 20-119 (351)
411 PRK10529 DNA-binding transcrip 23.7 4E+02 0.0086 21.6 9.8 108 211-318 3-117 (225)
412 COG1184 GCD2 Translation initi 23.6 2.5E+02 0.0054 24.8 5.8 39 63-101 119-157 (301)
413 cd01425 RPS2 Ribosomal protein 23.6 4E+02 0.0088 21.6 10.5 40 249-289 126-166 (193)
414 COG4087 Soluble P-type ATPase 23.5 3.4E+02 0.0073 20.7 6.5 37 232-270 95-131 (152)
415 PRK08366 vorA 2-ketoisovalerat 23.2 3.7E+02 0.0081 24.8 7.2 52 209-260 259-320 (390)
416 PRK06436 glycerate dehydrogena 23.2 3E+02 0.0066 24.3 6.5 37 242-278 165-206 (303)
417 PRK10766 DNA-binding transcrip 23.2 4E+02 0.0087 21.5 9.9 108 211-318 4-118 (221)
418 PF04392 ABC_sub_bind: ABC tra 22.4 1.7E+02 0.0036 25.6 4.8 42 51-95 47-89 (294)
419 KOG0832 Mitochondrial/chloropl 22.3 4.8E+02 0.01 22.0 7.3 37 252-289 175-212 (251)
420 PRK13398 3-deoxy-7-phosphohept 21.6 5.3E+02 0.012 22.3 9.2 98 184-282 28-142 (266)
421 TIGR02525 plasmid_TraJ plasmid 21.6 2.7E+02 0.0058 25.5 5.9 47 52-98 214-261 (372)
422 TIGR01917 gly_red_sel_B glycin 21.4 3E+02 0.0064 25.6 6.0 46 52-97 65-117 (431)
423 TIGR01286 nifK nitrogenase mol 21.4 3.8E+02 0.0083 25.9 7.2 35 51-91 425-459 (515)
424 PF00926 DHBP_synthase: 3,4-di 21.4 2.1E+02 0.0045 23.4 4.6 19 266-284 3-21 (194)
425 PRK08223 hypothetical protein; 21.4 2.8E+02 0.0061 24.3 5.7 47 238-284 105-154 (287)
426 PF13905 Thioredoxin_8: Thiore 21.4 1.8E+02 0.0039 19.9 4.0 50 182-231 2-57 (95)
427 PF02585 PIG-L: GlcNAc-PI de-N 21.3 56 0.0012 24.2 1.4 24 50-73 87-110 (128)
428 PRK08618 ornithine cyclodeamin 21.2 2.3E+02 0.005 25.3 5.4 100 180-287 125-229 (325)
429 PF10346 Con-6: Conidiation pr 21.2 1.7E+02 0.0037 16.4 2.9 32 305-336 2-33 (36)
430 TIGR01918 various_sel_PB selen 21.0 3.1E+02 0.0066 25.5 6.0 46 52-97 65-117 (431)
431 smart00870 Asparaginase Aspara 21.0 2.4E+02 0.0051 25.2 5.4 47 47-93 57-111 (323)
432 PRK00257 erythronate-4-phospha 20.9 3.8E+02 0.0082 24.7 6.8 14 243-256 160-173 (381)
433 cd05564 PTS_IIB_chitobiose_lic 20.9 2.4E+02 0.0052 19.8 4.5 70 212-282 3-79 (96)
434 KOG0081 GTPase Rab27, small G 20.9 2.7E+02 0.0059 21.8 4.9 46 51-96 112-164 (219)
435 cd01409 SIRT4 SIRT4: Eukaryoti 20.8 4.3E+02 0.0094 22.7 6.8 54 231-284 181-241 (260)
436 cd01410 SIRT7 SIRT7: Eukaryoti 20.8 4.2E+02 0.009 21.8 6.5 54 230-283 131-191 (206)
437 PF13407 Peripla_BP_4: Peripla 20.7 3.6E+02 0.0079 22.5 6.5 35 249-283 54-89 (257)
438 PRK09836 DNA-binding transcrip 20.6 4.7E+02 0.01 21.2 10.0 68 251-318 45-117 (227)
439 PRK14851 hypothetical protein; 20.5 6.2E+02 0.013 25.5 8.6 48 237-284 120-170 (679)
440 COG0803 LraI ABC-type metal io 20.4 3.7E+02 0.0081 23.7 6.5 56 127-189 34-89 (303)
441 cd01145 TroA_c Periplasmic bin 20.3 4.3E+02 0.0094 21.5 6.6 110 236-348 37-162 (203)
442 COG1273 Ku-homolog [Replicatio 20.3 2.9E+02 0.0063 23.7 5.3 138 222-363 79-230 (278)
443 PRK05299 rpsB 30S ribosomal pr 20.3 5.1E+02 0.011 22.3 7.0 38 251-289 158-196 (258)
444 PRK10701 DNA-binding transcrip 20.3 4.9E+02 0.011 21.4 10.0 108 211-318 3-117 (240)
445 PRK09622 porA pyruvate flavodo 20.3 6.7E+02 0.015 23.3 8.4 72 232-317 300-381 (407)
446 PRK11083 DNA-binding response 20.2 4.7E+02 0.01 21.1 10.3 105 211-318 5-120 (228)
447 cd03466 Nitrogenase_NifN_2 Nit 20.2 7.2E+02 0.016 23.3 11.7 87 194-281 134-253 (429)
448 PRK10336 DNA-binding transcrip 20.2 4.6E+02 0.0099 21.0 10.1 105 211-318 2-117 (219)
449 PRK15062 hydrogenase isoenzyme 20.1 2.3E+02 0.0051 25.6 5.0 86 196-281 117-219 (364)
450 cd01492 Aos1_SUMO Ubiquitin ac 20.0 3.1E+02 0.0067 22.4 5.5 45 244-288 104-149 (197)
No 1
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=100.00 E-value=2.4e-50 Score=375.72 Aligned_cols=343 Identities=81% Similarity=1.342 Sum_probs=294.6
Q ss_pred CCCCcccccccccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHH
Q 016648 38 PCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLV 117 (385)
Q Consensus 38 ~~~~~~~~~~~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 117 (385)
+.+.+...+..+....++.+.+++.+||+||+|++....+.++.+++..++|+|++.|++.+.........+..+..+.+
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~ 198 (465)
T PLN02871 119 PCPFYQKVPLSLALSPRIISEVARFKPDLIHASSPGIMVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDI 198 (465)
T ss_pred CCccCCCceeeccCCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHH
Confidence 34444444444555568889999999999999987655566666778889999999999766554433333333334456
Q ss_pred HHHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccH
Q 016648 118 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSL 197 (385)
Q Consensus 118 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~ 197 (385)
.+.+.+.+|.++++|+.+.+.+.+.+..+.+++.++|||+|.+.+.+.......+.+.....+++++|+|+|++.+.||+
T Consensus 199 ~r~~~~~ad~ii~~S~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~ 278 (465)
T PLN02871 199 IRFLHRAADLTLVTSPALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNL 278 (465)
T ss_pred HHHHHhhCCEEEECCHHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhH
Confidence 67888999999999999999999877555689999999999998876544444444433334467889999999999999
Q ss_pred HHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcE
Q 016648 198 DFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 277 (385)
Q Consensus 198 ~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 277 (385)
+.++++++++++++++|+|+|++.+.++++..+.+|+|+|+++++|+..+|+.||++|+||..|++|++++|||+||+||
T Consensus 279 ~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PV 358 (465)
T PLN02871 279 DFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPV 358 (465)
T ss_pred HHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCE
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCcccccCCC---CCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 016648 278 VGVRAGGIPDIIPEDQD---GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 278 I~s~~~~~~e~~~~~~~---~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~ 354 (385)
|+++.++..|++ .+ +.+|++++++|+++++++|.++++|++.++++++++++.+++|+|+.+++++++..|+++
T Consensus 359 I~s~~gg~~eiv---~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~fsw~~~a~~l~~~~Y~~~ 435 (465)
T PLN02871 359 VAARAGGIPDII---PPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVEKWDWRAATRKLRNEQYSAA 435 (465)
T ss_pred EEcCCCCcHhhh---hcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999 77 899999999999999999999999999999999999999989999999999986689999
Q ss_pred HHHHHHHhhccCCccchhhcccccCcccc
Q 016648 355 IWFWRKKRAQLLRPIQWLAKRIFPSAEVN 383 (385)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (385)
++..++++.++.++..|.++.++|..+.|
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (465)
T PLN02871 436 IWFWRKKRAQLLGPVQWLPAQLFPAPEVN 464 (465)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccccccC
Confidence 99999999999999999999999998876
No 2
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=100.00 E-value=4.9e-40 Score=300.01 Aligned_cols=277 Identities=23% Similarity=0.314 Sum_probs=226.9
Q ss_pred HHHhhccCCCEEEeCCCchhHHHHHHHHH--HhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcCh
Q 016648 56 ISEVARFKPDIIHASSPGIMVFGALIIAK--LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 133 (385)
Q Consensus 56 ~~~i~~~~pDiI~~~~~~~~~~~~~~~~~--~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~ 133 (385)
...+++.+||+||+|....... +..+++ ..+.|+++++|+..... .. .........+..++++|.++++|+
T Consensus 111 ~~~~~~~~~diihaH~~~~~~~-~~~~~~~~~~~~~~~~t~Hg~d~~~-~~-----~~~~~~~~~~~~~~~ad~vv~~S~ 183 (406)
T PRK15427 111 AQVATPFVADVFIAHFGPAGVT-AAKLRELGVLRGKIATIFHGIDISS-RE-----VLNHYTPEYQQLFRRGDLMLPISD 183 (406)
T ss_pred hhhhccCCCCEEEEcCChHHHH-HHHHHHhCCCCCCeEEEEccccccc-ch-----hhhhhhHHHHHHHHhCCEEEECCH
Confidence 3455788999999998643322 333333 23457788999853211 00 011122245667899999999999
Q ss_pred hHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC----CC
Q 016648 134 AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PE 209 (385)
Q Consensus 134 ~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~----~~ 209 (385)
..++.+.+.+ .+.+++.++|||+|.+.|.+.... ...+.+.++++|++.+.||++.++++++.+ ++
T Consensus 184 ~~~~~l~~~g-~~~~ki~vi~nGvd~~~f~~~~~~---------~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~ 253 (406)
T PRK15427 184 LWAGRLQKMG-CPPEKIAVSRMGVDMTRFSPRPVK---------APATPLEIISVARLTEKKGLHVAIEACRQLKEQGVA 253 (406)
T ss_pred HHHHHHHHcC-CCHHHEEEcCCCCCHHHcCCCccc---------cCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCC
Confidence 9999998764 467899999999999887653211 123557899999999999999999999876 57
Q ss_pred ceEEEEeCCccHHHHHHHHcCC----CeEEecccChHHHHHHHHhCcEEEEcCCC------CCCcHHHHHHHhcCCcEEE
Q 016648 210 ARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSES------ETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 210 ~~l~i~G~g~~~~~l~~~~~~~----~i~~~g~~~~~~~~~~~~~adi~v~ps~~------e~~~~~~~Ea~a~G~PvI~ 279 (385)
+++.|+|+|+..+++++++.+. +|.+.|+++++++.++|+.||++++||.. ||+|++++|||+||+|||+
T Consensus 254 ~~l~ivG~G~~~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~ 333 (406)
T PRK15427 254 FRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVS 333 (406)
T ss_pred EEEEEEECchhHHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEE
Confidence 8999999999888888877643 59999999999999999999999999974 9999999999999999999
Q ss_pred ecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc-CHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Q 016648 280 VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 353 (385)
Q Consensus 280 s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~ 353 (385)
|+.++.+|++ .++.+|++++++|+++++++|.++++ |++.++++++++++.+ ++|+|+..++++. ++|++
T Consensus 334 t~~~g~~E~v---~~~~~G~lv~~~d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~~~~~~~l~-~~~~~ 405 (406)
T PRK15427 334 TLHSGIPELV---EADKSGWLVPENDAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQQVINRELA-SLLQA 405 (406)
T ss_pred eCCCCchhhh---cCCCceEEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHhh
Confidence 9999999999 88999999999999999999999999 9999999999999998 5699999999997 68875
No 3
>PRK10307 putative glycosyl transferase; Provisional
Probab=100.00 E-value=3.2e-39 Score=297.63 Aligned_cols=287 Identities=18% Similarity=0.239 Sum_probs=234.6
Q ss_pred cCCCEEEeCCCchh-HHHHHHHHHHhCCCEEEEEecCCCcccccc---cccccchhHHHHHHHHHHhCCeEEEcChhHHH
Q 016648 62 FKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPVYIPRY---TFSWLVKPMWLVIKFLHRAADLTLVPSVAIGK 137 (385)
Q Consensus 62 ~~pDiI~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 137 (385)
.+||+||+|.+... ...+..+++..++|+++++||.++...... ......+....+++.+++.+|.++++|+.+.+
T Consensus 105 ~~~Div~~~~p~~~~~~~~~~~~~~~~~~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~~~~ 184 (412)
T PRK10307 105 WRPDRVIGVVPTLFCAPGARLLARLSGARTWLHIQDYEVDAAFGLGLLKGGKVARLATAFERSLLRRFDNVSTISRSMMN 184 (412)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHhhCCCEEEEeccCCHHHHHHhCCccCcHHHHHHHHHHHHHHhhCCEEEecCHHHHH
Confidence 78999999987543 344556778889999999999765432111 11223334456788899999999999999999
Q ss_pred HHHHhcccCCCcEEEeeCCCCCCCCCCCCCCh--hhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC---CCceE
Q 016648 138 DLEAARVTAANKIRIWKKGVDSESFHPRFRSS--EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL---PEARI 212 (385)
Q Consensus 138 ~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~---~~~~l 212 (385)
.+.+.+ .+..++.++|||+|.+.+.+..... ..+.+.. ..+++++++|+|++.+.||++.++++++.+ +++++
T Consensus 185 ~~~~~~-~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~~~~~~~l 262 (412)
T PRK10307 185 KAREKG-VAAEKVIFFPNWSEVARFQPVADADVDALRAQLG-LPDGKKIVLYSGNIGEKQGLELVIDAARRLRDRPDLIF 262 (412)
T ss_pred HHHHcC-CCcccEEEECCCcCHhhcCCCCccchHHHHHHcC-CCCCCEEEEEcCccccccCHHHHHHHHHHhccCCCeEE
Confidence 998764 4667899999999988776543221 2223332 234568999999999999999999999876 57999
Q ss_pred EEEeCCccHHHHHHHHcCC---CeEEecccChHHHHHHHHhCcEEEEcCCCCC----CcHHHHHHHhcCCcEEEecCCCC
Q 016648 213 AFIGDGPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDVFVMPSESET----LGLVVLEAMSSGIPVVGVRAGGI 285 (385)
Q Consensus 213 ~i~G~g~~~~~l~~~~~~~---~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~----~~~~~~Ea~a~G~PvI~s~~~~~ 285 (385)
+|+|+|+..+++++++... +|.|.|+++.+++.++|+.||++++|+..|+ +|++++|||+||+|||+|+.++.
T Consensus 263 ~ivG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~ 342 (412)
T PRK10307 263 VICGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGT 342 (412)
T ss_pred EEECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCc
Confidence 9999999888888776533 6999999999999999999999999999887 68899999999999999998763
Q ss_pred --CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Q 016648 286 --PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 286 --~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~-~~s~~~~~~~~~~~iy~~~~~ 356 (385)
.+++ . .+|++++++|+++++++|.++++|++.+++|++++++.++ +|||+.+++++. .+|++++.
T Consensus 343 ~~~~~i---~--~~G~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~~~~~~~ 410 (412)
T PRK10307 343 ELGQLV---E--GIGVCVEPESVEALVAAIAALARQALLRPKLGTVAREYAERTLDKENVLRQFI-ADIRGLVA 410 (412)
T ss_pred hHHHHH---h--CCcEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHHHhc
Confidence 5777 4 5899999999999999999999999999999999999984 699999999997 79998874
No 4
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=8.8e-39 Score=291.47 Aligned_cols=293 Identities=25% Similarity=0.363 Sum_probs=232.9
Q ss_pred ccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCE-EEEEecCCCcccccccccccchhHHHHHHHHHHhCCe
Q 016648 49 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPI-VMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 127 (385)
Q Consensus 49 ~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~-v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 127 (385)
+....++.+++++.+|||||+|++.. ......++..++|. +.+.|+..... ..... .....+.+...+.+|.
T Consensus 67 ~~~~~~l~~~l~~~~~Divh~~~~~~--~~~~~~~~~~~~~~~i~~~h~~~~~~--~~~~~---~~~~~~~~~~~~~~~~ 139 (374)
T TIGR03088 67 VAVYPQLYRLLRQLRPDIVHTRNLAA--LEAQLPAALAGVPARIHGEHGRDVFD--LDGSN---WKYRWLRRLYRPLIHH 139 (374)
T ss_pred hHHHHHHHHHHHHhCCCEEEEcchhH--HHHHHHHHhcCCCeEEEeecCccccc--chhhH---HHHHHHHHHHHhcCCe
Confidence 34567899999999999999998532 22334556667775 33334321111 00001 1123345566678999
Q ss_pred EEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC
Q 016648 128 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 207 (385)
Q Consensus 128 ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~ 207 (385)
++++|+...+.+.+.++.+.+++.+++||+|.+.+.+.........+.....+++++++++|++.+.||++.++++++.+
T Consensus 140 ~i~vs~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l 219 (374)
T TIGR03088 140 YVAVSRDLEDWLRGPVKVPPAKIHQIYNGVDTERFHPSRGDRSPILPPDFFADESVVVGTVGRLQAVKDQPTLVRAFALL 219 (374)
T ss_pred EEEeCHHHHHHHHHhcCCChhhEEEeccCccccccCCCccchhhhhHhhcCCCCCeEEEEEecCCcccCHHHHHHHHHHH
Confidence 99999999999988776677899999999999887654322221222222345678999999999999999999998765
Q ss_pred ----C----CceEEEEeCCccHHHHHHHHcCC----CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCC
Q 016648 208 ----P----EARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI 275 (385)
Q Consensus 208 ----~----~~~l~i~G~g~~~~~l~~~~~~~----~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~ 275 (385)
+ +++++++|+|+..+.+++.+... ++.+.|+. +|+..+|+.||++++||..||+|++++|||+||+
T Consensus 220 ~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~ 297 (374)
T TIGR03088 220 VRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGER--DDVPALMQALDLFVLPSLAEGISNTILEAMASGL 297 (374)
T ss_pred HHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCc--CCHHHHHHhcCEEEeccccccCchHHHHHHHcCC
Confidence 2 68999999998878887776643 47888865 8999999999999999999999999999999999
Q ss_pred cEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Q 016648 276 PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 276 PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~~ 354 (385)
|||+|+.++..|++ .++.+|++++++|++++++++.++++|++.+..+++++++.+ ++|||+.+++++. .+|+++
T Consensus 298 Pvv~s~~~g~~e~i---~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~y~~~ 373 (374)
T TIGR03088 298 PVIATAVGGNPELV---QHGVTGALVPPGDAVALARALQPYVSDPAARRAHGAAGRARAEQQFSINAMVAAYA-GLYDQL 373 (374)
T ss_pred CEEEcCCCCcHHHh---cCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHh
Confidence 99999999999999 889999999999999999999999999999999999999998 6799999999997 799876
No 5
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=100.00 E-value=2.4e-38 Score=291.63 Aligned_cols=287 Identities=27% Similarity=0.349 Sum_probs=231.7
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCccccccc--ccccchhHHHHHHHHHHhCCeEEEcChhHHHHH
Q 016648 62 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYT--FSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDL 139 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 139 (385)
.+||+||+|.+. ....++.+++..++|+|++.|+.......... ........+..++.+++.+|.++++|+...+.+
T Consensus 100 ~~~Diih~h~~~-~~~~~~~~~~~~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~~~~ 178 (405)
T TIGR03449 100 GYYDLIHSHYWL-SGQVGWLLRDRWGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEARDL 178 (405)
T ss_pred CCCCeEEechHH-HHHHHHHHHHhcCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHHHHH
Confidence 479999999853 34445566777899999999986422111000 001111233456778999999999999989888
Q ss_pred HHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC----CC--ceEE
Q 016648 140 EAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PE--ARIA 213 (385)
Q Consensus 140 ~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~----~~--~~l~ 213 (385)
...++.+.+++.+||||+|.+.+.+.. ....+.+... .+++++|+++|++.+.||++.++++++.+ ++ ++++
T Consensus 179 ~~~~~~~~~ki~vi~ngvd~~~~~~~~-~~~~~~~~~~-~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ 256 (405)
T TIGR03449 179 VRHYDADPDRIDVVAPGADLERFRPGD-RATERARLGL-PLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVI 256 (405)
T ss_pred HHHcCCChhhEEEECCCcCHHHcCCCc-HHHHHHhcCC-CCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEE
Confidence 777666678999999999998876542 2222333322 34678999999999999999999999776 55 8899
Q ss_pred EEeC----C-ccHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC
Q 016648 214 FIGD----G-PYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 214 i~G~----g-~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~ 284 (385)
++|. | +..+.+++++.+ .+|++.|+++.+++.++|+.||++++||..|++|++++|||++|+|||+++.++
T Consensus 257 ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~ 336 (405)
T TIGR03449 257 VVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG 336 (405)
T ss_pred EEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC
Confidence 9995 3 345566666543 369999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 016648 285 IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 285 ~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~ 355 (385)
..+++ .++.+|++++++|+++++++|.+++++++.++++++++++.+++|||+.+++++. ++|++++
T Consensus 337 ~~e~i---~~~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~~~fsw~~~~~~~~-~~y~~~~ 403 (405)
T TIGR03449 337 LPVAV---ADGETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHAAGFSWAATADGLL-SSYRDAL 403 (405)
T ss_pred cHhhh---ccCCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHh
Confidence 99999 8899999999999999999999999999999999999999888899999999997 7999876
No 6
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=100.00 E-value=3.3e-38 Score=287.21 Aligned_cols=282 Identities=31% Similarity=0.449 Sum_probs=233.6
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
.....+..++++.+||+||+|... ....+..+++..|+|++++.|+.....................++.+++.+|.++
T Consensus 69 ~~~~~~~~~~~~~~~dvvh~~~~~-~~~~~~~~~~~~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii 147 (367)
T cd05844 69 GSAPQLRRLLRRHRPDLVHAHFGF-DGVYALPLARRLGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFI 147 (367)
T ss_pred ccccHHHHHHHhhCCCEEEeccCc-hHHHHHHHHHHcCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEE
Confidence 334566667899999999999753 3444555678889999999997543222211111112334456777889999999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC--
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-- 207 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~-- 207 (385)
++|+.+++.+.+.+ .+..++.++|||+|.+.+.+.. ...+..+++|+|++...||++.+++++..+
T Consensus 148 ~~s~~~~~~~~~~~-~~~~~i~vi~~g~d~~~~~~~~-----------~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~ 215 (367)
T cd05844 148 AVSQFIRDRLLALG-FPPEKVHVHPIGVDTAKFTPAT-----------PARRPPRILFVGRFVEKKGPLLLLEAFARLAR 215 (367)
T ss_pred ECCHHHHHHHHHcC-CCHHHeEEecCCCCHHhcCCCC-----------CCCCCcEEEEEEeeccccChHHHHHHHHHHHH
Confidence 99999999998874 4667899999999987765431 133567899999999999999999999765
Q ss_pred --CCceEEEEeCCccHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcCC------CCCCcHHHHHHHhcCC
Q 016648 208 --PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSE------SETLGLVVLEAMSSGI 275 (385)
Q Consensus 208 --~~~~l~i~G~g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~------~e~~~~~~~Ea~a~G~ 275 (385)
++++++++|+|+..+++++++.+ .++++.|+++.+++..+|+.||++++||. .||+|++++|||+||+
T Consensus 216 ~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~ 295 (367)
T cd05844 216 RVPEVRLVIIGDGPLLAALEALARALGLGGRVTFLGAQPHAEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGV 295 (367)
T ss_pred hCCCeEEEEEeCchHHHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCC
Confidence 68999999999887878777665 36999999999999999999999999986 5899999999999999
Q ss_pred cEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 016648 276 PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 347 (385)
Q Consensus 276 PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~ 347 (385)
|||+++.++..+++ .++.+|++++++|+++++++|.++++|++.+++++.++++.+ ++|||+..++++.
T Consensus 296 PvI~s~~~~~~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~l~ 365 (367)
T cd05844 296 PVVATRHGGIPEAV---EDGETGLLVPEGDVAALAAALGRLLADPDLRARMGAAGRRRVEERFDLRRQTAKLE 365 (367)
T ss_pred CEEEeCCCCchhhe---ecCCeeEEECCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 99999999999999 889999999999999999999999999999999999999998 5799999999885
No 7
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=100.00 E-value=3.2e-38 Score=289.35 Aligned_cols=287 Identities=21% Similarity=0.304 Sum_probs=230.5
Q ss_pred cchHHHHHHhhccCCCEEEeCCCch-hHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeE
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGI-MVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 128 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~-~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 128 (385)
.....+.+.+++.+|||||+|++.. ....+.++++..++|+|++.|+.++... ..........+..++++|.+
T Consensus 75 ~~~~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~------~~~~~~~~~~~~~~~~~d~i 148 (398)
T cd03796 75 GTFPLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFAD------ASSIHTNKLLRFSLADVDHV 148 (398)
T ss_pred hhHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccc------hhhHHhhHHHHHhhccCCEE
Confidence 3456777888899999999998643 3344556678889999999998643110 01111233567778999999
Q ss_pred EEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC-
Q 016648 129 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL- 207 (385)
Q Consensus 129 i~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~- 207 (385)
+++|+...+.+......+.+++.++|||+|.+.+.+.... ..+++++++++|++.+.||++.++++++.+
T Consensus 149 i~~s~~~~~~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~---------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~ 219 (398)
T cd03796 149 ICVSHTSKENTVLRASLDPERVSVIPNAVDSSDFTPDPSK---------RDNDKITIVVISRLVYRKGIDLLVGIIPEIC 219 (398)
T ss_pred EEecHhHhhHHHHHhCCChhhEEEEcCccCHHHcCCCccc---------CCCCceEEEEEeccchhcCHHHHHHHHHHHH
Confidence 9999999887644444467889999999998877654321 234678999999999999999999999754
Q ss_pred ---CCceEEEEeCCccHHHHHHHHcCC----CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 208 ---PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 208 ---~~~~l~i~G~g~~~~~l~~~~~~~----~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
++++++++|+|+..+.+++++.+. +|.+.|+++.+++..+|+.||++++||..|++|.+++|||+||+|||++
T Consensus 220 ~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s 299 (398)
T cd03796 220 KKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVST 299 (398)
T ss_pred hhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEEC
Confidence 789999999998777777766543 5999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHH
Q 016648 281 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWF 357 (385)
Q Consensus 281 ~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~~~~~ 357 (385)
+.++.+|++ .++. ++++ +.|.++++++|.+++++......+.+++++.+ ++|||+.+++++. ++|++++..
T Consensus 300 ~~gg~~e~i---~~~~-~~~~-~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~-~~y~~l~~~ 371 (398)
T cd03796 300 RVGGIPEVL---PPDM-ILLA-EPDVESIVRKLEEAISILRTGKHDPWSFHNRVKKMYSWEDVAKRTE-KVYDRILQT 371 (398)
T ss_pred CCCCchhhe---eCCc-eeec-CCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHhhCCHHHHHHHHH-HHHHHHhcC
Confidence 999999999 5553 4444 44899999999999998766666778888876 6799999999998 799998853
No 8
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=100.00 E-value=5.7e-38 Score=290.25 Aligned_cols=292 Identities=20% Similarity=0.273 Sum_probs=219.8
Q ss_pred HHHHHHhhcc--CCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCccccccc-----ccccc---hhH--HHHHHH
Q 016648 53 PRIISEVARF--KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYT-----FSWLV---KPM--WLVIKF 120 (385)
Q Consensus 53 ~~l~~~i~~~--~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~-----~~~~~---~~~--~~~~~~ 120 (385)
..+.+.+++. +|||||+|++. ..+.+.++++..++|+|++.|+.......... ..... ... ...++.
T Consensus 102 ~~l~~~~~~~~~~~DvIH~h~~~-~~~~~~~~~~~~~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (439)
T TIGR02472 102 DNLLQHLRQQGHLPDLIHAHYAD-AGYVGARLSRLLGVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEE 180 (439)
T ss_pred HHHHHHHHHcCCCCCEEEEcchh-HHHHHHHHHHHhCCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHH
Confidence 4677777654 79999999863 45556667788899999999985322110000 00000 001 124677
Q ss_pred HHHhCCeEEEcChhHH-HHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChh---hHh--hhcCCCCCCcEEEEEeecccc
Q 016648 121 LHRAADLTLVPSVAIG-KDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRW--RLSNGEPDKPLIVHVGRLGVE 194 (385)
Q Consensus 121 ~~~~ad~ii~~s~~~~-~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~---~~~--~~~~~~~~~~~i~~~G~~~~~ 194 (385)
.++.+|.|+++|.... +.+..+.+.+.+++.+||||+|.+.|.+...... .+. +.....++.++++++|++.+.
T Consensus 181 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~ki~vIpnGvd~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~ 260 (439)
T TIGR02472 181 TLAHASLVITSTHQEIEEQYALYDSYQPERMQVIPPGVDLSRFYPPQSSEETSEIDNLLAPFLKDPEKPPILAISRPDRR 260 (439)
T ss_pred HHHhCCEEEECCHHHHHHHHHhccCCCccceEEECCCcChhhcCCCCccccchhHHHHHHhhccccCCcEEEEEcCCccc
Confidence 8999999999986544 3344444456789999999999988866432211 110 111124467799999999999
Q ss_pred ccHHHHHHHHHhC----CCceEE-EEeCCccHHH-----------HHHHHc----CCCeEEecccChHHHHHHHHhC---
Q 016648 195 KSLDFLKRVMDRL----PEARIA-FIGDGPYREE-----------LEKMFT----GMPAVFTGMLLGEELSQAYASG--- 251 (385)
Q Consensus 195 k~~~~l~~a~~~~----~~~~l~-i~G~g~~~~~-----------l~~~~~----~~~i~~~g~~~~~~~~~~~~~a--- 251 (385)
||++.+++|++.+ +..+++ ++|+|+..+. +..++. ..+|+|.|+++.+++..+|+.|
T Consensus 261 Kg~~~li~A~~~l~~~~~~~~l~li~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~ 340 (439)
T TIGR02472 261 KNIPSLVEAYGRSPKLQEMANLVLVLGCRDDIRKMESQQREVLQKVLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARS 340 (439)
T ss_pred CCHHHHHHHHHhChhhhhhccEEEEeCCccccccccHHHHHHHHHHHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhc
Confidence 9999999999754 224444 5677654221 222222 2369999999999999999987
Q ss_pred -cEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHH
Q 016648 252 -DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAA 330 (385)
Q Consensus 252 -di~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a 330 (385)
|++|+||..|++|++++|||+||+|||+|+.++..|++ .++.+|++++++|+++++++|.++++|++.++++++++
T Consensus 341 ~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg~~eiv---~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a 417 (439)
T TIGR02472 341 RGIFVNPALTEPFGLTLLEAAACGLPIVATDDGGPRDII---ANCRNGLLVDVLDLEAIASALEDALSDSSQWQLWSRNG 417 (439)
T ss_pred CCEEecccccCCcccHHHHHHHhCCCEEEeCCCCcHHHh---cCCCcEEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 88999999999999999999999999999999999999
Q ss_pred HHHH-HhCCHHHHHHHHHH
Q 016648 331 RQEM-EKYDWRAATRTIRN 348 (385)
Q Consensus 331 ~~~~-~~~s~~~~~~~~~~ 348 (385)
++.+ ++|||+.+++++.+
T Consensus 418 ~~~~~~~fsw~~~~~~~~~ 436 (439)
T TIGR02472 418 IEGVRRHYSWDAHVEKYLR 436 (439)
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 9987 67999999999974
No 9
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.6e-37 Score=282.13 Aligned_cols=303 Identities=43% Similarity=0.714 Sum_probs=250.7
Q ss_pred CCCCcccccccccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHH
Q 016648 38 PCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLV 117 (385)
Q Consensus 38 ~~~~~~~~~~~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~ 117 (385)
+.+..............+.+.+++.+||+||++.+......+..+++..++|++.++|+.++..................
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~pdii~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (364)
T cd03814 58 PLPGYPEIRLALPPRRRVRRLLDAFAPDVVHIATPGPLGLAALRAARRLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAY 137 (364)
T ss_pred ccCcccceEecccchhhHHHHHHhcCCCEEEEeccchhhHHHHHHHHHcCCCEEEEEecChHHHhhhcccchHhHhhHHH
Confidence 33444444455556678888899999999999987665566667778899999999999776544433333334444567
Q ss_pred HHHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccH
Q 016648 118 IKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSL 197 (385)
Q Consensus 118 ~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~ 197 (385)
.+.+.+.+|.+++.|+.+.+.+...+ ..++.++++|+|...+.+.........+.. .+++++++++|++...||+
T Consensus 138 ~~~~~~~~d~i~~~s~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~G~~~~~k~~ 212 (364)
T cd03814 138 LRWFHNRADRVLVPSPSLADELRARG---FRRVRLWPRGVDTELFHPRRRDEALRARLG--PPDRPVLLYVGRLAPEKNL 212 (364)
T ss_pred HHHHHHhCCEEEeCCHHHHHHHhccC---CCceeecCCCccccccCcccccHHHHHHhC--CCCCeEEEEEeccccccCH
Confidence 78889999999999999999665543 358899999999988766544333333332 4467889999999999999
Q ss_pred HHHHHHHHhCC---CceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcC
Q 016648 198 DFLKRVMDRLP---EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG 274 (385)
Q Consensus 198 ~~l~~a~~~~~---~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G 274 (385)
+.++++++.+. +++++++|.++..+.++ ....++.+.|+++.+++.++|+.||++++|+..|++|++++|||+||
T Consensus 213 ~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~--~~~~~v~~~g~~~~~~~~~~~~~~d~~l~~s~~e~~~~~~lEa~a~g 290 (364)
T cd03814 213 EALLDADLPLRRRPPVRLVIVGDGPARARLE--ARYPNVHFLGFLDGEELAAAYASADVFVFPSRTETFGLVVLEAMASG 290 (364)
T ss_pred HHHHHHHHHhhhcCCceEEEEeCCchHHHHh--ccCCcEEEEeccCHHHHHHHHHhCCEEEECcccccCCcHHHHHHHcC
Confidence 99999999884 69999999988777665 23458999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 016648 275 IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 351 (385)
Q Consensus 275 ~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy 351 (385)
+|||+++.++..+++ .++.+|+++++.|.++++++|.++++|++.++++++++++.+++|+|+.+++++. .+|
T Consensus 291 ~PvI~~~~~~~~~~i---~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 363 (364)
T cd03814 291 LPVVAPDAGGPADIV---TDGENGLLVEPGDAEAFAAALAALLADPELRRRMAARARAEAERRSWEAFLDNLL-EAY 363 (364)
T ss_pred CCEEEcCCCCchhhh---cCCcceEEcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhhcCHHHHHHHHH-Hhh
Confidence 999999999999999 8889999999999999999999999999999999999999998899999999997 566
No 10
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.2e-38 Score=294.41 Aligned_cols=275 Identities=26% Similarity=0.331 Sum_probs=226.0
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccc----------cccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 62 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIP----------RYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
.++|+||+|+....++.+.++++..|+|+|++.|+.++.... ......+.+.+..+.+..++.||.|+++
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii~~ 251 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKARRGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRITTL 251 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEEec
Confidence 378999999876666777778888999999999997543210 0111122233455677889999999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC----
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL---- 207 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~---- 207 (385)
|+...+...+.+ .+.+++.+||||+|.+.+.+.... ...++.++++++|++.+.||++.+++|++.+
T Consensus 252 s~~~~~~~~~~g-~~~~ki~vIpNgid~~~f~~~~~~--------~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~ 322 (475)
T cd03813 252 YEGNRERQIEDG-ADPEKIRVIPNGIDPERFAPARRA--------RPEKEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKI 322 (475)
T ss_pred CHHHHHHHHHcC-CCHHHeEEeCCCcCHHHcCCcccc--------ccCCCCcEEEEEeccccccCHHHHHHHHHHHHHhC
Confidence 999988876654 467899999999999877654321 1234678999999999999999999999754
Q ss_pred CCceEEEEeCCcc----HHHHHHHHc----CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 208 PEARIAFIGDGPY----REELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 208 ~~~~l~i~G~g~~----~~~l~~~~~----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
++++++|+|.++. .+++++++. ..+|+|+| .+++.++|+.+|++++||..|++|++++|||+||+|||+
T Consensus 323 p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G---~~~v~~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVa 399 (475)
T cd03813 323 PDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG---FQNVKEYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVA 399 (475)
T ss_pred CCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC---CccHHHHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEE
Confidence 7899999998742 344555554 24799999 488999999999999999999999999999999999999
Q ss_pred ecCCCCCcccccCCC------CCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Q 016648 280 VRAGGIPDIIPEDQD------GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYN 352 (385)
Q Consensus 280 s~~~~~~e~~~~~~~------~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~-~~s~~~~~~~~~~~iy~ 352 (385)
|+.++..+++ .+ |.+|+++++.|+++++++|.++++|++.++++++++++.++ .|+|+.+++++. .+|+
T Consensus 400 td~g~~~elv---~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~~~~~~~~~~~a~~~v~~~~s~~~~~~~y~-~lY~ 475 (475)
T cd03813 400 TDVGSCRELI---EGADDEALGPAGEVVPPADPEALARAILRLLKDPELRRAMGEAGRKRVERYYTLERMIDSYR-RLYL 475 (475)
T ss_pred CCCCChHHHh---cCCcccccCCceEEECCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 9999999999 55 56999999999999999999999999999999999999985 599999999997 6874
No 11
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=100.00 E-value=2.7e-37 Score=283.26 Aligned_cols=288 Identities=25% Similarity=0.408 Sum_probs=229.5
Q ss_pred ccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccc-cccccchhHHHHHHHHHHhCCeEEEcChhHHHHH
Q 016648 61 RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRY-TFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDL 139 (385)
Q Consensus 61 ~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 139 (385)
..+||+||+|++.. .+.+.+.++..++|+|++.|+..+...... ..........+.++..++.+|.++++|+.+++.+
T Consensus 81 ~~~~divh~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~ 159 (388)
T TIGR02149 81 PVDADVVHSHTWYT-FLAGHLAKKLYDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAVSGGMREDI 159 (388)
T ss_pred CCCCCeEeecchhh-hhHHHHHHHhcCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEccHHHHHHH
Confidence 34799999998633 344455667789999999999765321110 0111122344567888999999999999999999
Q ss_pred HHhc-ccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC-CCceEEEEeC
Q 016648 140 EAAR-VTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGD 217 (385)
Q Consensus 140 ~~~~-~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~-~~~~l~i~G~ 217 (385)
.+.+ +.+..++.++|||+|.+.+.+.. ....+.+... +++.++++|+|++.+.||++.++++++++ ++.+++++|+
T Consensus 160 ~~~~~~~~~~~i~vi~ng~~~~~~~~~~-~~~~~~~~~~-~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~~~~~l~i~g~ 237 (388)
T TIGR02149 160 LKYYPDLDPEKVHVIYNGIDTKEYKPDD-GNVVLDRYGI-DRSRPYILFVGRITRQKGVPHLLDAVHYIPKDVQVVLCAG 237 (388)
T ss_pred HHHcCCCCcceEEEecCCCChhhcCCCc-hHHHHHHhCC-CCCceEEEEEcccccccCHHHHHHHHHHHhhcCcEEEEeC
Confidence 8876 44567899999999998776542 2223333332 45677899999999999999999999988 5789999887
Q ss_pred CccH----HHHHHHHcC-----CCeEE-ecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCc
Q 016648 218 GPYR----EELEKMFTG-----MPAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 287 (385)
Q Consensus 218 g~~~----~~l~~~~~~-----~~i~~-~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e 287 (385)
|+.. +.+++...+ .++.+ .|.++.+++..+|+.||++|+||..|++|++++|||+||+|||+++.++..|
T Consensus 238 g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~~~~e 317 (388)
T TIGR02149 238 APDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATGGIPE 317 (388)
T ss_pred CCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCCCHHH
Confidence 6543 334443322 23665 4679999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEeeCCCCH------HHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Q 016648 288 IIPEDQDGKIGYLFNPGDL------DDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 288 ~~~~~~~~~~g~~~~~~~~------~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~~~ 355 (385)
++ .++.+|++++++|. ++++++|.++++|++.++++++++++.+ ++|||+.+++++. .+|++++
T Consensus 318 ~i---~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~-~~y~~~~ 388 (388)
T TIGR02149 318 VV---VDGETGFLVPPDNSDADGFQAELAKAINILLADPELAKKMGIAGRKRAEEEFSWGSIAKKTV-EMYRKVL 388 (388)
T ss_pred Hh---hCCCceEEcCCCCCcccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHhhC
Confidence 99 88899999999988 9999999999999999999999999987 6799999999997 7998763
No 12
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=3.9e-37 Score=280.57 Aligned_cols=289 Identities=24% Similarity=0.442 Sum_probs=233.5
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHH---hCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCe
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKL---LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 127 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~---~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 127 (385)
....+.+.+++.+||+||+|.+........+..+. .++|+++++|+........ ...+....+..++.+|.
T Consensus 72 ~~~~l~~~i~~~~~divh~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~------~~~~~~~~~~~~~~~d~ 145 (371)
T cd04962 72 LASKIAEVAKRYKLDLLHVHYAVPHAVAAYLAREILGKKDLPVVTTLHGTDITLVGQ------DPSFQPATRFSIEKSDG 145 (371)
T ss_pred HHHHHHHHHhcCCccEEeecccCCccHHHHHHHHhcCcCCCcEEEEEcCCccccccc------cccchHHHHHHHhhCCE
Confidence 35678888999999999999764333333333332 3899999999743211100 11223366778899999
Q ss_pred EEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC
Q 016648 128 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 207 (385)
Q Consensus 128 ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~ 207 (385)
++++|+.+.+.+.+.+. ...++.++|||+|...+.+... ...+.+.. ..+++.+++++|++.+.||++.++++++.+
T Consensus 146 ii~~s~~~~~~~~~~~~-~~~~i~vi~n~~~~~~~~~~~~-~~~~~~~~-~~~~~~~il~~g~l~~~K~~~~li~a~~~l 222 (371)
T cd04962 146 VTAVSESLRQETYELFD-ITKEIEVIPNFVDEDRFRPKPD-EALKRRLG-APEGEKVLIHISNFRPVKRIDDVIRIFAKV 222 (371)
T ss_pred EEEcCHHHHHHHHHhcC-CcCCEEEecCCcCHhhcCCCch-HHHHHhcC-CCCCCeEEEEecccccccCHHHHHHHHHHH
Confidence 99999999999987764 4678999999999876654322 12222222 245678899999999999999999999776
Q ss_pred ---CCceEEEEeCCccHHHHHHHHcCC----CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 208 ---PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 208 ---~~~~l~i~G~g~~~~~l~~~~~~~----~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
.+++++++|.|+..+.+++.+.+. ++.+.|+. +++.++|+.||++++||..|++|++++|||++|+|||+|
T Consensus 223 ~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s 300 (371)
T cd04962 223 RKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQ--DHVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVAS 300 (371)
T ss_pred HhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCc--ccHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEe
Confidence 468999999998887777766543 59999987 689999999999999999999999999999999999999
Q ss_pred cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Q 016648 281 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 281 ~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~~ 354 (385)
+.++..|++ .++.+|++++++|++++++++..+++|++.+.++++++++.+ ++|||+.+++++. .+|+++
T Consensus 301 ~~~~~~e~i---~~~~~G~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~-~~y~~~ 371 (371)
T cd04962 301 NAGGIPEVV---KHGETGFLVDVGDVEAMAEYALSLLEDDELWQEFSRAARNRAAERFDSERIVPQYE-ALYRRL 371 (371)
T ss_pred CCCCchhhh---cCCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHhC
Confidence 999999999 889999999999999999999999999999999999999996 6799999999997 688763
No 13
>PRK00654 glgA glycogen synthase; Provisional
Probab=100.00 E-value=2.7e-37 Score=287.47 Aligned_cols=295 Identities=20% Similarity=0.283 Sum_probs=220.3
Q ss_pred HHHHHhhc--cCCCEEEeCCCchhHHHHHHHHHH-----hCCCEEEEEecCCCccccc------ccc---cccchh----
Q 016648 54 RIISEVAR--FKPDIIHASSPGIMVFGALIIAKL-----LCVPIVMSYHTHVPVYIPR------YTF---SWLVKP---- 113 (385)
Q Consensus 54 ~l~~~i~~--~~pDiI~~~~~~~~~~~~~~~~~~-----~~~p~v~~~h~~~~~~~~~------~~~---~~~~~~---- 113 (385)
.+...+++ .+|||||+|++... +.+..+++. .++|+|+|+|+........ ... .+....
T Consensus 107 ~~~~~~~~~~~~pDiiH~h~w~~~-~~~~~l~~~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (466)
T PRK00654 107 AAAEFAEGLDPRPDIVHAHDWHTG-LIPALLKEKYWRGYPDIKTVFTIHNLAYQGLFPAEILGELGLPAEAFHLEGLEFY 185 (466)
T ss_pred HHHHHHHhcCCCCceEEECCcHHH-HHHHHHHHhhhccCCCCCEEEEcCCCcCCCcCCHHHHHHcCCChHHcCchhhhcC
Confidence 34445543 48999999997543 334444433 3799999999964321100 000 000000
Q ss_pred -HHHHHHHHHHhCCeEEEcChhHHHHHHHh-c--------ccCCCcEEEeeCCCCCCCCCCCCCC---------------
Q 016648 114 -MWLVIKFLHRAADLTLVPSVAIGKDLEAA-R--------VTAANKIRIWKKGVDSESFHPRFRS--------------- 168 (385)
Q Consensus 114 -~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-~--------~~~~~~i~vi~~~v~~~~~~~~~~~--------------- 168 (385)
...+.+..++.||.|+++|+.+++.+... + ..+.+++.+|+||+|.+.|.|....
T Consensus 186 ~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~~~ki~vI~NGid~~~~~p~~~~~~~~~~~~~~~~~k~ 265 (466)
T PRK00654 186 GQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRARSGKLSGILNGIDYDIWNPETDPLLAANYSADDLEGKA 265 (466)
T ss_pred CcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhcccCceEecCCCCccccCCccCcccccccChhhhhchH
Confidence 01245667899999999999999888652 1 2346789999999999988765321
Q ss_pred ---hhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC--CCceEEEEeCCc--cHHHHHHHHcCC--CeEE-ecc
Q 016648 169 ---SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PAVF-TGM 238 (385)
Q Consensus 169 ---~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G~g~--~~~~l~~~~~~~--~i~~-~g~ 238 (385)
...+.+.....++.++++++||+.+.||++.++++++++ .+++++|+|+|+ ..+.++++..+. ++.+ .|+
T Consensus 266 ~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~ 345 (466)
T PRK00654 266 ENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGY 345 (466)
T ss_pred HHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 122333333334678999999999999999999999877 479999999875 345666666543 4554 555
Q ss_pred cChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCC------CeeEeeCCCCHHHHHHH
Q 016648 239 LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG------KIGYLFNPGDLDDCLSK 312 (385)
Q Consensus 239 ~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~------~~g~~~~~~~~~~l~~~ 312 (385)
+.+.+..+|+.||++|+||..|++|++++|||+||+|+|+++.++..|.+ .++ .+|++++++|+++++++
T Consensus 346 -~~~~~~~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v---~~~~~~~~~~~G~lv~~~d~~~la~~ 421 (466)
T PRK00654 346 -DEALAHRIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTV---IDYNPEDGEATGFVFDDFNAEDLLRA 421 (466)
T ss_pred -CHHHHHHHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCcccee---ecCCCCCCCCceEEeCCCCHHHHHHH
Confidence 55667899999999999999999999999999999999999999999999 666 89999999999999999
Q ss_pred HhHhhc---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 016648 313 LEPLLY---NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 313 i~~ll~---~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~ 356 (385)
|.++++ +++.+.++++++.+ ++|||+.+++++. ++|+++++
T Consensus 422 i~~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~lY~~~~~ 465 (466)
T PRK00654 422 LRRALELYRQPPLWRALQRQAMA--QDFSWDKSAEEYL-ELYRRLLG 465 (466)
T ss_pred HHHHHHHhcCHHHHHHHHHHHhc--cCCChHHHHHHHH-HHHHHHhh
Confidence 999876 66667777776643 5799999999997 79998864
No 14
>PLN02939 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.2e-36 Score=288.68 Aligned_cols=301 Identities=19% Similarity=0.239 Sum_probs=225.7
Q ss_pred HHHHHhhc--cCCCEEEeCCCchhHHHHHHHHH-----HhCCCEEEEEecCCCccc-ccccc-------ccc--------
Q 016648 54 RIISEVAR--FKPDIIHASSPGIMVFGALIIAK-----LLCVPIVMSYHTHVPVYI-PRYTF-------SWL-------- 110 (385)
Q Consensus 54 ~l~~~i~~--~~pDiI~~~~~~~~~~~~~~~~~-----~~~~p~v~~~h~~~~~~~-~~~~~-------~~~-------- 110 (385)
....++.+ .+|||||+|+|....++.++... ..++|+|+|+|+...... +.... ..+
T Consensus 599 AaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~~~~~~~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~ 678 (977)
T PLN02939 599 AALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYAPKGFNSARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQD 678 (977)
T ss_pred HHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHhhccCCCCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhh
Confidence 34455554 69999999999765543333321 245789999999643221 10000 000
Q ss_pred -chhHHHHHHHHHHhCCeEEEcChhHHHHHHHhc--------ccCCCcEEEeeCCCCCCCCCCCCC--------------
Q 016648 111 -VKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR--------VTAANKIRIWKKGVDSESFHPRFR-------------- 167 (385)
Q Consensus 111 -~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~--------~~~~~~i~vi~~~v~~~~~~~~~~-------------- 167 (385)
..-.-.+.+..+..||.|+++|+..++.+...+ .....++.+|+||+|.+.|.|...
T Consensus 679 ~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te~G~GL~~~L~~~~~Kl~gIlNGID~e~wnPatD~~L~~~Ys~~dl~G 758 (977)
T PLN02939 679 NAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSEGGRGLQDTLKFHSKKFVGILNGIDTDTWNPSTDRFLKVQYNANDLQG 758 (977)
T ss_pred ccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHHhccchHHHhccccCCceEEecceehhhcCCccccccccccChhhhhh
Confidence 000112345556679999999999999987632 235678999999999999887643
Q ss_pred ----ChhhHhhhcCCC--CCCcEEEEEeeccccccHHHHHHHHHhC--CCceEEEEeCCccH---HHHHHHHcC----CC
Q 016648 168 ----SSEMRWRLSNGE--PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPYR---EELEKMFTG----MP 232 (385)
Q Consensus 168 ----~~~~~~~~~~~~--~~~~~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G~g~~~---~~l~~~~~~----~~ 232 (385)
....+.++.... ++.++|+++||+.+.||++.+++|+..+ ++++++|+|+|+.. +.++.+... .+
T Consensus 759 K~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~~dvqLVIvGdGp~~~~e~eL~~La~~l~l~dr 838 (977)
T PLN02939 759 KAANKAALRKQLGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAELGGQFVLLGSSPVPHIQREFEGIADQFQSNNN 838 (977)
T ss_pred hhhhhHHHHHHhCCCcccccceEEEEeecCCcccChHHHHHHHHHHhhcCCEEEEEeCCCcHHHHHHHHHHHHHcCCCCe
Confidence 123344444332 3568999999999999999999999776 57899999998653 445555443 36
Q ss_pred eEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccC------CCCCeeEeeCCCCH
Q 016648 233 AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED------QDGKIGYLFNPGDL 306 (385)
Q Consensus 233 i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~------~~~~~g~~~~~~~~ 306 (385)
|.|.|..+......+|+.||++|+||.+|++|++++|||+||+|+|++++||..+.+.+. .++.+|+++++.|+
T Consensus 839 V~FlG~~de~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf~~~D~ 918 (977)
T PLN02939 839 IRLILKYDEALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTFLTPDE 918 (977)
T ss_pred EEEEeccCHHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEecCCCH
Confidence 999999987778899999999999999999999999999999999999999999988221 12579999999999
Q ss_pred HHHHHHHhHhhc----CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Q 016648 307 DDCLSKLEPLLY----NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWF 357 (385)
Q Consensus 307 ~~l~~~i~~ll~----~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~~ 357 (385)
++++++|.++++ |++.++.+++++. .+.|||+.+++++. .+|++++..
T Consensus 919 eaLa~AL~rAL~~~~~dpe~~~~L~~~am--~~dFSWe~~A~qYe-eLY~~ll~~ 970 (977)
T PLN02939 919 QGLNSALERAFNYYKRKPEVWKQLVQKDM--NIDFSWDSSASQYE-ELYQRAVAR 970 (977)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHH--HhcCCHHHHHHHHH-HHHHHHHHh
Confidence 999999998775 7888888887654 25799999999997 799999864
No 15
>PRK14099 glycogen synthase; Provisional
Probab=100.00 E-value=3.7e-37 Score=285.46 Aligned_cols=288 Identities=22% Similarity=0.296 Sum_probs=218.0
Q ss_pred ccCCCEEEeCCCchhHHHHHHHHH-HhCCCEEEEEecCCCcc-cccccc-------cccc-hh-----HHHHHHHHHHhC
Q 016648 61 RFKPDIIHASSPGIMVFGALIIAK-LLCVPIVMSYHTHVPVY-IPRYTF-------SWLV-KP-----MWLVIKFLHRAA 125 (385)
Q Consensus 61 ~~~pDiI~~~~~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~-~~~~~~-------~~~~-~~-----~~~~~~~~~~~a 125 (385)
+.+|||||+|++.....+.++..+ ..++|+|+|+|+..... .+.... .... .. ...+.+..++.|
T Consensus 131 ~~~pDIiH~Hdw~~~l~~~~l~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~a 210 (485)
T PRK14099 131 GFVPDIVHAHDWQAGLAPAYLHYSGRPAPGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLA 210 (485)
T ss_pred CCCCCEEEECCcHHHHHHHHHHhCCCCCCCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhc
Confidence 579999999998554443333211 24679999999964221 110000 0000 00 012467788999
Q ss_pred CeEEEcChhHHHHHHHhc---------ccCCCcEEEeeCCCCCCCCCCCCCC------------------hhhHhhhcCC
Q 016648 126 DLTLVPSVAIGKDLEAAR---------VTAANKIRIWKKGVDSESFHPRFRS------------------SEMRWRLSNG 178 (385)
Q Consensus 126 d~ii~~s~~~~~~~~~~~---------~~~~~~i~vi~~~v~~~~~~~~~~~------------------~~~~~~~~~~ 178 (385)
|.|+++|+..++.+.+.. ..+.+++.+|+||+|.+.|.|.... ...+++....
T Consensus 211 d~vitVS~~~a~ei~~~~~g~gl~~~l~~~~~ki~vI~NGID~~~f~p~~~~~~~~~~~~~~~~~k~~~k~~l~~~~gl~ 290 (485)
T PRK14099 211 DRITTVSPTYALEIQGPEAGMGLDGLLRQRADRLSGILNGIDTAVWNPATDELIAATYDVETLAARAANKAALQARFGLD 290 (485)
T ss_pred CeeeecChhHHHHHhcccCCcChHHHHHhhCCCeEEEecCCchhhccccccchhhhcCChhHHHhHHHhHHHHHHHcCCC
Confidence 999999999999987531 1246789999999999988775432 1223333332
Q ss_pred C-CCCcEEEEEeeccccccHHHHHHHHHhC--CCceEEEEeCCc--cHHHHHHHHcCC--Ce-EEecccChHHHHHHH-H
Q 016648 179 E-PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PA-VFTGMLLGEELSQAY-A 249 (385)
Q Consensus 179 ~-~~~~~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G~g~--~~~~l~~~~~~~--~i-~~~g~~~~~~~~~~~-~ 249 (385)
. ++.++++++||+.+.||++.+++|+..+ .+++++|+|+|+ ..+.++++..+. ++ .+.|+ ++++..+| +
T Consensus 291 ~~~~~~li~~VgRL~~~KG~d~Li~A~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~v~~~~G~--~~~l~~~~~a 368 (485)
T PRK14099 291 PDPDALLLGVISRLSWQKGLDLLLEALPTLLGEGAQLALLGSGDAELEARFRAAAQAYPGQIGVVIGY--DEALAHLIQA 368 (485)
T ss_pred cccCCcEEEEEecCCccccHHHHHHHHHHHHhcCcEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC--CHHHHHHHHh
Confidence 2 3567899999999999999999999876 479999999886 355666665432 44 68898 48898887 5
Q ss_pred hCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCC---------CeeEeeCCCCHHHHHHHHhH---hh
Q 016648 250 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG---------KIGYLFNPGDLDDCLSKLEP---LL 317 (385)
Q Consensus 250 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~---------~~g~~~~~~~~~~l~~~i~~---ll 317 (385)
.||++++||..|++|++.+|||+||+|+|+++.|+..|.+ .++ .+|+++++.|+++++++|.+ ++
T Consensus 369 ~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V---~~~~~~~~~~~~~~G~l~~~~d~~~La~ai~~a~~l~ 445 (485)
T PRK14099 369 GADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTV---VDANEMAIATGVATGVQFSPVTADALAAALRKTAALF 445 (485)
T ss_pred cCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCcccee---ecccccccccCCCceEEeCCCCHHHHHHHHHHHHHHh
Confidence 7999999999999999999999999988889999999988 443 68999999999999999997 67
Q ss_pred cCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 016648 318 YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~ 356 (385)
+|++.+++++++++ .++|||++.++++. ++|+++++
T Consensus 446 ~d~~~~~~l~~~~~--~~~fSw~~~a~~y~-~lY~~l~~ 481 (485)
T PRK14099 446 ADPVAWRRLQRNGM--TTDVSWRNPAQHYA-ALYRSLVA 481 (485)
T ss_pred cCHHHHHHHHHHhh--hhcCChHHHHHHHH-HHHHHHHh
Confidence 79999999998886 36799999999997 79999975
No 16
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=100.00 E-value=6.9e-37 Score=294.67 Aligned_cols=287 Identities=17% Similarity=0.234 Sum_probs=224.6
Q ss_pred CCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCccccc---cc------cc--ccchhHHHHHHHHHHhCCeEEEc
Q 016648 63 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPR---YT------FS--WLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~---~~------~~--~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
.||+||+|.+ ..+.++..+++..++|+|+|.|......... .. .. +........++.++..||.||++
T Consensus 310 ~pDvIHaHyw-~sG~aa~~L~~~lgVP~V~T~HSLgr~K~~~ll~~g~~~~~~~~~~y~~~~Ri~~Ee~~l~~Ad~VIas 388 (1050)
T TIGR02468 310 WPYVIHGHYA-DAGDSAALLSGALNVPMVLTGHSLGRDKLEQLLKQGRMSKEEINSTYKIMRRIEAEELSLDASEIVITS 388 (1050)
T ss_pred CCCEEEECcc-hHHHHHHHHHHhhCCCEEEECccchhhhhhhhcccccccccccccccchHHHHHHHHHHHHhcCEEEEe
Confidence 4999999986 4566677788999999999999853221100 00 00 00011223578899999999999
Q ss_pred ChhHHHHHHHhcc-c---------------------CCCcEEEeeCCCCCCCCCCCCCChh-------------------
Q 016648 132 SVAIGKDLEAARV-T---------------------AANKIRIWKKGVDSESFHPRFRSSE------------------- 170 (385)
Q Consensus 132 s~~~~~~~~~~~~-~---------------------~~~~i~vi~~~v~~~~~~~~~~~~~------------------- 170 (385)
|....+.+...|. . ...++.|||||+|.+.|.|......
T Consensus 389 T~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1050)
T TIGR02468 389 TRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGNEEHPAKPDPPIWS 468 (1050)
T ss_pred CHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhcccccccccccchhhH
Confidence 9999987555542 1 1248999999999999877432111
Q ss_pred hHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCC------CceEEEEeCCccH-----------HHHHHHHcC---
Q 016648 171 MRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP------EARIAFIGDGPYR-----------EELEKMFTG--- 230 (385)
Q Consensus 171 ~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~------~~~l~i~G~g~~~-----------~~l~~~~~~--- 230 (385)
...+. ...+++++|+++||+.+.||++.+++|+..++ ++. +|+|.++.. ..+..++.+
T Consensus 469 ~l~r~-~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~-LIiG~gdd~d~l~~~~~~~l~~L~~li~~lgL 546 (1050)
T TIGR02468 469 EIMRF-FTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELANLT-LIMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL 546 (1050)
T ss_pred HHHhh-cccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEE-EEEecCchhhhhhccchHHHHHHHHHHHHhCC
Confidence 01111 12457789999999999999999999998763 333 467865432 234444443
Q ss_pred -CCeEEecccChHHHHHHHHhC----cEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCC
Q 016648 231 -MPAVFTGMLLGEELSQAYASG----DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGD 305 (385)
Q Consensus 231 -~~i~~~g~~~~~~~~~~~~~a----di~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~ 305 (385)
.+|.|.|+++.++++.+|+.| |++|+||..|+||++++||||||+|||+|+.++..|++ .++.+|+++++.|
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG~~EII---~~g~nGlLVdP~D 623 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGGPVDIH---RVLDNGLLVDPHD 623 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCCcHHHh---ccCCcEEEECCCC
Confidence 359999999999999999988 69999999999999999999999999999999999999 8899999999999
Q ss_pred HHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 016648 306 LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 306 ~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~ 356 (385)
+++|+++|.++++|++.++++++++++.+++|+|+.++++++ ..+..+..
T Consensus 624 ~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~FSWe~ia~~yl-~~i~~~~~ 673 (1050)
T TIGR02468 624 QQAIADALLKLVADKQLWAECRQNGLKNIHLFSWPEHCKTYL-SRIASCRP 673 (1050)
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHCCHHHHHHHHH-HHHHHHhc
Confidence 999999999999999999999999999998899999999998 57777763
No 17
>PRK14098 glycogen synthase; Provisional
Probab=100.00 E-value=8.5e-37 Score=283.34 Aligned_cols=298 Identities=18% Similarity=0.257 Sum_probs=223.4
Q ss_pred HHHHHhhc--cCCCEEEeCCCchhHHHHHHHHHH-------hCCCEEEEEecCCCccccc-ccc---------cccch--
Q 016648 54 RIISEVAR--FKPDIIHASSPGIMVFGALIIAKL-------LCVPIVMSYHTHVPVYIPR-YTF---------SWLVK-- 112 (385)
Q Consensus 54 ~l~~~i~~--~~pDiI~~~~~~~~~~~~~~~~~~-------~~~p~v~~~h~~~~~~~~~-~~~---------~~~~~-- 112 (385)
...+.+++ .+|||||+|++.....+. .+++. .++|+|+|+|+........ ... .....
T Consensus 130 a~l~~~~~~~~~pDiiH~hdw~t~l~~~-~l~~~~~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~ 208 (489)
T PRK14098 130 GVLETLQRLGWKPDIIHCHDWYAGLVPL-LLKTVYADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREG 208 (489)
T ss_pred HHHHHHHhcCCCCCEEEecCcHHHHHHH-HHHHHhhhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcC
Confidence 34455544 589999999975544433 33332 3799999999964321100 000 00000
Q ss_pred hHHHHHHHHHHhCCeEEEcChhHHHHHHHh----ccc------CCCcEEEeeCCCCCCCCCCCCCCh-------------
Q 016648 113 PMWLVIKFLHRAADLTLVPSVAIGKDLEAA----RVT------AANKIRIWKKGVDSESFHPRFRSS------------- 169 (385)
Q Consensus 113 ~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~----~~~------~~~~i~vi~~~v~~~~~~~~~~~~------------- 169 (385)
....+.+..+..||.|+++|+..++.+... ++. ...++.+|+||+|.+.|.|.....
T Consensus 209 ~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~gl~~~l~~~~~kl~~I~NGID~~~~~p~~d~~~~~~~~~~~~~~k 288 (489)
T PRK14098 209 DEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAFGLDKVLEERKMRLHGILNGIDTRQWNPSTDKLIKKRYSIERLDGK 288 (489)
T ss_pred CcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCcChHHHHHhcCCCeeEEeCCccccccCCcccccccccCCcchhhhH
Confidence 012355678899999999999999998752 122 257899999999999888754321
Q ss_pred -----hhHhhhcCC-CCCCcEEEEEeeccccccHHHHHHHHHhC--CCceEEEEeCCcc--HHHHHHHHcC--CCeEEec
Q 016648 170 -----EMRWRLSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPY--REELEKMFTG--MPAVFTG 237 (385)
Q Consensus 170 -----~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G~g~~--~~~l~~~~~~--~~i~~~g 237 (385)
..+.++... .++.++++++|++.+.||++.+++|+.++ ++++++|+|+|+. .+.+++++.+ .+|.+.|
T Consensus 289 ~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~KG~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g 368 (489)
T PRK14098 289 LENKKALLEEVGLPFDEETPLVGVIINFDDFQGAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQT 368 (489)
T ss_pred HHHHHHHHHHhCCCCccCCCEEEEeccccccCcHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 112222222 23578999999999999999999999887 5799999998873 4667766654 3699999
Q ss_pred ccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCccccc-CCCCCeeEeeCCCCHHHHHHHHhHh
Q 016648 238 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE-DQDGKIGYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 238 ~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~-~~~~~~g~~~~~~~~~~l~~~i~~l 316 (385)
.++.+++..+|+.||++++||..|++|++.+|||+||+|+|+++.|+..|.+.+ ..++.+|+++++.|+++++++|.++
T Consensus 369 ~~~~~~~~~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~ 448 (489)
T PRK14098 369 EFTDAFFHLAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEA 448 (489)
T ss_pred ecCHHHHHHHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888721 1136799999999999999999986
Q ss_pred h---cCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 016648 317 L---YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 317 l---~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~ 355 (385)
+ +|++.++++++++. .++|||+..++++. ++|++++
T Consensus 449 l~~~~~~~~~~~~~~~~~--~~~fsw~~~a~~y~-~lY~~~~ 487 (489)
T PRK14098 449 LALYHDEERWEELVLEAM--ERDFSWKNSAEEYA-QLYRELL 487 (489)
T ss_pred HHHHcCHHHHHHHHHHHh--cCCCChHHHHHHHH-HHHHHHh
Confidence 5 57777777766553 25799999999997 7999886
No 18
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=9.3e-37 Score=275.97 Aligned_cols=291 Identities=18% Similarity=0.204 Sum_probs=221.5
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEE-EecCCCcccccccccccchhHHHHHH--HHHHhCCe
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMS-YHTHVPVYIPRYTFSWLVKPMWLVIK--FLHRAADL 127 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~-~h~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ad~ 127 (385)
....+..++++.+|||||+|......+ +.+.++..++|++++ .|+..+.. ........+....+ .+...+|
T Consensus 268 ~~~~l~~~ir~~rpDIVHt~~~~a~l~-g~laA~lagvpviv~~~h~~~~~~----~~r~~~~e~~~~~~a~~i~~~sd- 341 (578)
T PRK15490 268 GIKHLVPHLCERKLDYLSVWQDGACLM-IALAALIAGVPRIQLGLRGLPPVV----RKRLFKPEYEPLYQALAVVPGVD- 341 (578)
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccHHH-HHHHHHhcCCCEEEEeecccCCcc----hhhHHHHHHHHhhhhceeEecch-
Confidence 366888999999999999998754333 455677789999764 55522211 11111000000111 1234445
Q ss_pred EEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCCh-hhHhhhcC-CCCCCcEEEEEeeccccccHHHHHHHHH
Q 016648 128 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS-EMRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMD 205 (385)
Q Consensus 128 ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~a~~ 205 (385)
+++.|...++.+.+.++.+.+++.+||||+|...|.+..... ..+.+... .+++.++++++|++...||...+++++.
T Consensus 342 ~v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a 421 (578)
T PRK15490 342 FMSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAA 421 (578)
T ss_pred hhhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHH
Confidence 667888888888888777889999999999998776643221 11111111 1345678999999999999999998876
Q ss_pred hC----CCceEEEEeCCccHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcE
Q 016648 206 RL----PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 277 (385)
Q Consensus 206 ~~----~~~~l~i~G~g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 277 (385)
++ ++++++|+|+|+..+++++++.+ .+|+|.|+. +++..+|+.+|++|+||..|++|++++|||+||+||
T Consensus 422 ~llk~~pdirLvIVGdG~~~eeLk~la~elgL~d~V~FlG~~--~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA~GlPV 499 (578)
T PRK15490 422 RYLQHHPATRFVLVGDGDLRAEAQKRAEQLGILERILFVGAS--RDVGYWLQKMNVFILFSRYEGLPNVLIEAQMVGVPV 499 (578)
T ss_pred HHHhHCCCeEEEEEeCchhHHHHHHHHHHcCCCCcEEECCCh--hhHHHHHHhCCEEEEcccccCccHHHHHHHHhCCCE
Confidence 53 78999999999988888877654 369999996 799999999999999999999999999999999999
Q ss_pred EEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHH---hHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Q 016648 278 VGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL---EPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 353 (385)
Q Consensus 278 I~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i---~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~ 353 (385)
|+|+.++..|++ .++.+|++++++|++++++++ ..+.++.+....+++++++.+ ++|||+.+++++. .+|.+
T Consensus 500 VATdvGG~~EiV---~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~e~FS~e~Mv~~y~-ki~~~ 575 (578)
T PRK15490 500 ISTPAGGSAECF---IEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQERFTVEHMVGTFV-KTIAS 575 (578)
T ss_pred EEeCCCCcHHHc---ccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH-HHHHh
Confidence 999999999999 899999999999998888876 444555555667889999998 5699999999997 57754
No 19
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=1.4e-36 Score=287.58 Aligned_cols=292 Identities=18% Similarity=0.199 Sum_probs=222.2
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEE-EEecCCCcccccccccccchhHHHHHHHH-HHhCCe
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM-SYHTHVPVYIPRYTFSWLVKPMWLVIKFL-HRAADL 127 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~-~~h~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ad~ 127 (385)
...+++.+++++.+|||||+|......+ +.+.++..++|+|+ +.|+..+..... ..........+.+ ...++.
T Consensus 387 ~~~~~L~~~lk~~kpDIVH~h~~~a~~l-g~lAa~~~gvPvIv~t~h~~~~~~~~~----~~~~~~~~l~~~l~~~~~~i 461 (694)
T PRK15179 387 EGTTKLTDVMRSSVPSVVHIWQDGSIFA-CALAALLAGVPRIVLSVRTMPPVDRPD----RYRVEYDIIYSELLKMRGVA 461 (694)
T ss_pred HHHHHHHHHHHHcCCcEEEEeCCcHHHH-HHHHHHHcCCCEEEEEeCCCccccchh----HHHHHHHHHHHHHHhcCCeE
Confidence 3467899999999999999998754433 44566778999876 456543221111 1111111122222 123456
Q ss_pred EEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcC-CCCCCcEEEEEeeccccccHHHHHHHHHh
Q 016648 128 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDR 206 (385)
Q Consensus 128 ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 206 (385)
+++.|+..++.+.+.++.+.+++.+||||+|...+.+.........+... .+++.++|+++|++.+.||++.+++++.+
T Consensus 462 ~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~ 541 (694)
T PRK15179 462 LSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQR 541 (694)
T ss_pred EEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHHHHHHHH
Confidence 67777777887877666678899999999998877543222111111111 13356789999999999999999999975
Q ss_pred C----CCceEEEEeCCccHHHHHHHHcCC----CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 207 L----PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 207 ~----~~~~l~i~G~g~~~~~l~~~~~~~----~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
+ ++++++|+|+|+..+.+++++.+. +|+|.|+. +++..+|+.+|++|+||..|++|++++|||+||+|||
T Consensus 542 l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~--~dv~~ll~aaDv~VlpS~~Egfp~vlLEAMA~G~PVV 619 (694)
T PRK15179 542 FAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLS--RRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVV 619 (694)
T ss_pred HHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCc--chHHHHHHhcCEEEeccccccchHHHHHHHHcCCeEE
Confidence 4 789999999999888888877643 69999998 6899999999999999999999999999999999999
Q ss_pred EecCCCCCcccccCCCCCeeEeeCCCC--HHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Q 016648 279 GVRAGGIPDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 352 (385)
Q Consensus 279 ~s~~~~~~e~~~~~~~~~~g~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~ 352 (385)
+|+.++..|++ .++.+|++++++| .+++++++.+++.+......+++++++.+ ++|||+.+++++. ++|+
T Consensus 620 at~~gG~~EiV---~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~~~FS~~~~~~~~~-~lY~ 692 (694)
T PRK15179 620 TTLAGGAGEAV---QEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTV-RCYQ 692 (694)
T ss_pred EECCCChHHHc---cCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 99999999999 8999999999776 46889999888876655567788899888 5799999999997 6885
No 20
>PLN02316 synthase/transferase
Probab=100.00 E-value=7.3e-36 Score=288.49 Aligned_cols=275 Identities=21% Similarity=0.264 Sum_probs=215.4
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHH------hCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhH
Q 016648 62 FKPDIIHASSPGIMVFGALIIAKL------LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAI 135 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~~------~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 135 (385)
.+|||||+|++..... +.+++.. .++|+|+|+|+.... . ...+..+..+|.|+++|+.+
T Consensus 708 ~~PDIIHaHDW~talv-a~llk~~~~~~~~~~~p~V~TiHnl~~~--~------------n~lk~~l~~AD~ViTVS~ty 772 (1036)
T PLN02316 708 FHPDIIHCHDWSSAPV-AWLFKDHYAHYGLSKARVVFTIHNLEFG--A------------NHIGKAMAYADKATTVSPTY 772 (1036)
T ss_pred CCCCEEEECCChHHHH-HHHHHHhhhhhccCCCCEEEEeCCcccc--h------------hHHHHHHHHCCEEEeCCHHH
Confidence 5899999999854333 3333332 458999999985311 0 12445778999999999999
Q ss_pred HHHHHHhccc--CCCcEEEeeCCCCCCCCCCCCCC-------------------hhhHhhhcCCCCCCcEEEEEeecccc
Q 016648 136 GKDLEAARVT--AANKIRIWKKGVDSESFHPRFRS-------------------SEMRWRLSNGEPDKPLIVHVGRLGVE 194 (385)
Q Consensus 136 ~~~~~~~~~~--~~~~i~vi~~~v~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~i~~~G~~~~~ 194 (385)
++.+...+.. ...++.+|+||+|.+.|.|.... ...+.++.....+.++++++||+.+.
T Consensus 773 a~EI~~~~~l~~~~~Kl~vI~NGID~~~w~P~tD~~lp~~y~~~~~~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~q 852 (1036)
T PLN02316 773 SREVSGNSAIAPHLYKFHGILNGIDPDIWDPYNDNFIPVPYTSENVVEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQ 852 (1036)
T ss_pred HHHHHhccCcccccCCEEEEECCccccccCCcccccccccCCchhhhhhhhhhHHHHHHHhCCCcccCeEEEEEeccccc
Confidence 9998876542 24799999999999887664221 11233343332367899999999999
Q ss_pred ccHHHHHHHHHhC--CCceEEEEeCCcc---HHHHHHHHcC------CCeEEecccChHHHHHHHHhCcEEEEcCCCCCC
Q 016648 195 KSLDFLKRVMDRL--PEARIAFIGDGPY---REELEKMFTG------MPAVFTGMLLGEELSQAYASGDVFVMPSESETL 263 (385)
Q Consensus 195 k~~~~l~~a~~~~--~~~~l~i~G~g~~---~~~l~~~~~~------~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~ 263 (385)
||++.+++|+..+ ++++|+|+|+|++ ...+++++.. .++.|.|..+......+|+.||++|+||..|++
T Consensus 853 KGvdlLi~Al~~ll~~~~qlVIvG~Gpd~~~e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~~EP~ 932 (1036)
T PLN02316 853 KGIHLIKHAIWRTLERNGQVVLLGSAPDPRIQNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSIFEPC 932 (1036)
T ss_pred cCHHHHHHHHHHHhhcCcEEEEEeCCCCHHHHHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCcccCc
Confidence 9999999999886 5799999998865 3455555552 257888777544446899999999999999999
Q ss_pred cHHHHHHHhcCCcEEEecCCCCCcccccCCCC-------------CeeEeeCCCCHHHHHHHHhHhhcC-HHHHHHHHHH
Q 016648 264 GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG-------------KIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQA 329 (385)
Q Consensus 264 ~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~-------------~~g~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~ 329 (385)
|++.+|||+||+|+|++++||+++.+ .++ .+|+++++.|+++++++|.+++.+ .+....++..
T Consensus 933 GLvqLEAMa~GtppVvs~vGGL~DtV---~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~ 1009 (1036)
T PLN02316 933 GLTQLTAMRYGSIPVVRKTGGLFDTV---FDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSL 1009 (1036)
T ss_pred cHHHHHHHHcCCCeEEEcCCCcHhhc---cccccccccccccccCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 99999999999999999999999998 553 689999999999999999999986 3555667888
Q ss_pred HHHHH-HhCCHHHHHHHHHHHHHHHHH
Q 016648 330 ARQEM-EKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 330 a~~~~-~~~s~~~~~~~~~~~iy~~~~ 355 (385)
+++.+ ++|||+..+++++ ++|+++.
T Consensus 1010 ~r~~m~~dFSW~~~A~~Y~-~LY~~a~ 1035 (1036)
T PLN02316 1010 CKRVMEQDWSWNRPALDYM-ELYHSAR 1035 (1036)
T ss_pred HHHHHHhhCCHHHHHHHHH-HHHHHHh
Confidence 88887 5699999999997 7999875
No 21
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=100.00 E-value=5.2e-36 Score=275.78 Aligned_cols=291 Identities=31% Similarity=0.438 Sum_probs=232.3
Q ss_pred hHHHHHHhhcc--CCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccc--cchhHHHHHHHHHHhCCe
Q 016648 52 SPRIISEVARF--KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSW--LVKPMWLVIKFLHRAADL 127 (385)
Q Consensus 52 ~~~l~~~i~~~--~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ad~ 127 (385)
...+.+.+++. +||+||+|.+. ....+..+++..++|+|++.|+............+ ........++.+++.+|.
T Consensus 88 ~~~~~~~~~~~~~~~Div~~~~~~-~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 166 (398)
T cd03800 88 ADDLLRFLRREGGRPDLIHAHYWD-SGLVALLLARRLGIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADR 166 (398)
T ss_pred HHHHHHHHHhcCCCccEEEEecCc-cchHHHHHHhhcCCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCE
Confidence 45566777777 99999999763 34445566788899999999986543221111111 112223456778999999
Q ss_pred EEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC
Q 016648 128 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 207 (385)
Q Consensus 128 ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~ 207 (385)
++++|+...+.+.+.+..+..++.++|||+|.+.+.+.......+.+.. ..+++++|+|+|++...||++.++++++.+
T Consensus 167 ii~~s~~~~~~~~~~~~~~~~~~~vi~ng~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l 245 (398)
T cd03800 167 VIASTPQEAEELYSLYGAYPRRIRVVPPGVDLERFTPYGRAEARRARLL-RDPDKPRILAVGRLDPRKGIDTLIRAYAEL 245 (398)
T ss_pred EEEcCHHHHHHHHHHccccccccEEECCCCCccceecccchhhHHHhhc-cCCCCcEEEEEcccccccCHHHHHHHHHHH
Confidence 9999999999998887656667999999999887765433222122222 245678999999999999999999999887
Q ss_pred ----CCceEEEEeCCccH------HHHHHHHc----CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhc
Q 016648 208 ----PEARIAFIGDGPYR------EELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 273 (385)
Q Consensus 208 ----~~~~l~i~G~g~~~------~~l~~~~~----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~ 273 (385)
++++++++|++... ..++.+.+ ..++.+.|+++.+++..+|+.||++++||..|++|++++|||++
T Consensus 246 ~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~ 325 (398)
T cd03800 246 PELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSREDLPALYRAADVFVNPALYEPFGLTALEAMAC 325 (398)
T ss_pred HHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCHHHHHHHHHhCCEEEecccccccCcHHHHHHhc
Confidence 37999999976532 22233333 24799999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 016648 274 GIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 347 (385)
Q Consensus 274 G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~ 347 (385)
|+|||+++.++..+++ .++.+|++++++|+++++++|.++++|++.++++++++++.+ ++|||+.+++++.
T Consensus 326 G~Pvi~s~~~~~~e~i---~~~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~ 397 (398)
T cd03800 326 GLPVVATAVGGPRDIV---VDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRRARARYTWERVAARLL 397 (398)
T ss_pred CCCEEECCCCCHHHHc---cCCCCeEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999999999999999 888899999999999999999999999999999999999998 6799999999875
No 22
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=100.00 E-value=3e-36 Score=281.84 Aligned_cols=294 Identities=22% Similarity=0.301 Sum_probs=224.3
Q ss_pred HHHHHhhc--cCCCEEEeCCCchhHHHHHHHHHHhC---CCEEEEEecCCCcc-cccccccc-------c-chh-----H
Q 016648 54 RIISEVAR--FKPDIIHASSPGIMVFGALIIAKLLC---VPIVMSYHTHVPVY-IPRYTFSW-------L-VKP-----M 114 (385)
Q Consensus 54 ~l~~~i~~--~~pDiI~~~~~~~~~~~~~~~~~~~~---~p~v~~~h~~~~~~-~~~~~~~~-------~-~~~-----~ 114 (385)
...+.+++ .+|||||+|++..... +..++...+ +|+|+|+|+..... .+...... . ... .
T Consensus 117 a~~~~~~~~~~~~DiiH~hdw~~~~~-~~~l~~~~~~~~~~~v~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (473)
T TIGR02095 117 AAAELLSGLGWQPDVVHAHDWHTALV-PALLKAVYRPNPIKTVFTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGR 195 (473)
T ss_pred HHHHHHHhcCCCCCEEEECCcHHHHH-HHHHHhhccCCCCCEEEEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCc
Confidence 44445543 6899999999754433 444444444 99999999965321 11100000 0 000 1
Q ss_pred HHHHHHHHHhCCeEEEcChhHHHHHHHh-cc--------cCCCcEEEeeCCCCCCCCCCCCCC-----------------
Q 016648 115 WLVIKFLHRAADLTLVPSVAIGKDLEAA-RV--------TAANKIRIWKKGVDSESFHPRFRS----------------- 168 (385)
Q Consensus 115 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~--------~~~~~i~vi~~~v~~~~~~~~~~~----------------- 168 (385)
..+.+..+..||.++++|+.+++.+... ++ .+..++.+|+||+|.+.|.|....
T Consensus 196 ~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~~k~~~ 275 (473)
T TIGR02095 196 VNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSGKLRGILNGIDTEVWNPATDPYLKANYSADDLAGKAEN 275 (473)
T ss_pred hHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCCCeEEEeCCCCccccCCCCCcccccCcCccchhhhhhh
Confidence 2245678899999999999999888652 11 135689999999999988764321
Q ss_pred -hhhHhhhcCCC-CCCcEEEEEeeccccccHHHHHHHHHhC--CCceEEEEeCCc--cHHHHHHHHcCC--CeEEecccC
Q 016648 169 -SEMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PAVFTGMLL 240 (385)
Q Consensus 169 -~~~~~~~~~~~-~~~~~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G~g~--~~~~l~~~~~~~--~i~~~g~~~ 240 (385)
...+.+..... ++.++++++|++.+.||++.+++++.++ .+++++|+|+|+ ..+.++++..+. ++.+.+..+
T Consensus 276 k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~ 355 (473)
T TIGR02095 276 KEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYD 355 (473)
T ss_pred HHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 11233333222 3678999999999999999999999887 469999999884 445666665433 578888888
Q ss_pred hHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCC------CeeEeeCCCCHHHHHHHHh
Q 016648 241 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG------KIGYLFNPGDLDDCLSKLE 314 (385)
Q Consensus 241 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~------~~g~~~~~~~~~~l~~~i~ 314 (385)
.+++..+|+.||++++||..|++|++++|||+||+|+|+++.++..|.+ .++ .+|+++++.|+++++++|.
T Consensus 356 ~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v---~~~~~~~~~~~G~l~~~~d~~~la~~i~ 432 (473)
T TIGR02095 356 EALAHLIYAGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTV---VDGDPEAESGTGFLFEEYDPGALLAALS 432 (473)
T ss_pred HHHHHHHHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceE---ecCCCCCCCCceEEeCCCCHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999 676 8999999999999999999
Q ss_pred Hhhc----CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 016648 315 PLLY----NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 315 ~ll~----~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~ 354 (385)
++++ +++.++++++++.+ ++|||+++++++. ++|+++
T Consensus 433 ~~l~~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~~Y~~l 473 (473)
T TIGR02095 433 RALRLYRQDPSLWEALQKNAMS--QDFSWDKSAKQYV-ELYRSL 473 (473)
T ss_pred HHHHHHhcCHHHHHHHHHHHhc--cCCCcHHHHHHHH-HHHHhC
Confidence 9887 88888888887753 5799999999997 799864
No 23
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=100.00 E-value=6.8e-36 Score=271.26 Aligned_cols=276 Identities=24% Similarity=0.394 Sum_probs=218.0
Q ss_pred ccchHHHHHHhhc---cCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhC
Q 016648 49 LALSPRIISEVAR---FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAA 125 (385)
Q Consensus 49 ~~~~~~l~~~i~~---~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 125 (385)
..+...+...+.. .++|+||+|+.. .+...+..+..+.|+++++|+.+. ...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~vi~v~~~~--~~~~~~~~~~~~~~~v~~~h~~~~-------------------~~~~~~~ 140 (380)
T PRK15484 82 LPYSQRILNIAHKFTITKDSVIVIHNSM--KLYRQIRERAPQAKLVMHMHNAFE-------------------PELLDKN 140 (380)
T ss_pred hhHHHHHHHHHHhcCCCCCcEEEEeCcH--HhHHHHHhhCCCCCEEEEEecccC-------------------hhHhccC
Confidence 3334455555544 569999999853 222333445567899999997531 1234568
Q ss_pred CeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHH
Q 016648 126 DLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 205 (385)
Q Consensus 126 d~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~ 205 (385)
+.++++|+.+++.+.+.+ +..++.++|||+|...+.+... ...+.+.. ..++..+++|+|++.+.||++.+++|++
T Consensus 141 ~~ii~~S~~~~~~~~~~~--~~~~i~vIpngvd~~~~~~~~~-~~~~~~~~-~~~~~~~il~~Grl~~~Kg~~~Li~A~~ 216 (380)
T PRK15484 141 AKIIVPSQFLKKFYEERL--PNADISIVPNGFCLETYQSNPQ-PNLRQQLN-ISPDETVLLYAGRISPDKGILLLMQAFE 216 (380)
T ss_pred CEEEEcCHHHHHHHHhhC--CCCCEEEecCCCCHHHcCCcch-HHHHHHhC-CCCCCeEEEEeccCccccCHHHHHHHHH
Confidence 999999999999988764 4568999999999887765322 12222322 2345688999999999999999999998
Q ss_pred hC----CCceEEEEeCCcc---------HHHHHHHHc--CCCeEEecccChHHHHHHHHhCcEEEEcCC-CCCCcHHHHH
Q 016648 206 RL----PEARIAFIGDGPY---------REELEKMFT--GMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLE 269 (385)
Q Consensus 206 ~~----~~~~l~i~G~g~~---------~~~l~~~~~--~~~i~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~E 269 (385)
.+ ++++++|+|+|+. .+.+++++. ..++.+.|+++.+++..+|+.||++++||. .|++|++++|
T Consensus 217 ~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~~aDv~v~pS~~~E~f~~~~lE 296 (380)
T PRK15484 217 KLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYPLADLVVVPSQVEEAFCMVAVE 296 (380)
T ss_pred HHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHhCCEEEeCCCCccccccHHHH
Confidence 65 7899999997653 123444433 247999999999999999999999999997 4999999999
Q ss_pred HHhcCCcEEEecCCCCCcccccCCCCCeeE-eeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 016648 270 AMSSGIPVVGVRAGGIPDIIPEDQDGKIGY-LFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 347 (385)
Q Consensus 270 a~a~G~PvI~s~~~~~~e~~~~~~~~~~g~-~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~ 347 (385)
||+||+|||+|+.++.+|++ .++.+|+ ++++.|+++++++|.++++|++. .++++++++.+ ++|||+.+++++.
T Consensus 297 Ama~G~PVI~s~~gg~~Eiv---~~~~~G~~l~~~~d~~~la~~I~~ll~d~~~-~~~~~~ar~~~~~~fsw~~~a~~~~ 372 (380)
T PRK15484 297 AMAAGKPVLASTKGGITEFV---LEGITGYHLAEPMTSDSIISDINRTLADPEL-TQIAEQAKDFVFSKYSWEGVTQRFE 372 (380)
T ss_pred HHHcCCCEEEeCCCCcHhhc---ccCCceEEEeCCCCHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999 8899998 56788999999999999999985 78999999887 6799999999997
Q ss_pred HHHHHHH
Q 016648 348 NEQYNAA 354 (385)
Q Consensus 348 ~~iy~~~ 354 (385)
++|++.
T Consensus 373 -~~l~~~ 378 (380)
T PRK15484 373 -EQIHNW 378 (380)
T ss_pred -HHHHHh
Confidence 687764
No 24
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=100.00 E-value=7.9e-36 Score=273.49 Aligned_cols=280 Identities=20% Similarity=0.243 Sum_probs=211.1
Q ss_pred hccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCc------cccccccccc-chhH---HHHHHHHHHhCCeEE
Q 016648 60 ARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPV------YIPRYTFSWL-VKPM---WLVIKFLHRAADLTL 129 (385)
Q Consensus 60 ~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~------~~~~~~~~~~-~~~~---~~~~~~~~~~ad~ii 129 (385)
+.++||+||+|...... ..+.....++|+|.+.|-+... ..+....... .... .......++.+|.++
T Consensus 84 ~~~~pdvi~~h~~~~~~--~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi 161 (396)
T cd03818 84 KGFRPDVIVAHPGWGET--LFLKDVWPDAPLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRNALILLALAQADAGV 161 (396)
T ss_pred cCCCCCEEEECCccchh--hhHHHhCCCCCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhhhHhHHHHHhCCEEE
Confidence 44689999999753322 2222233578988766532211 1111111100 0111 112346789999999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEee-ccccccHHHHHHHHHhC-
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR-LGVEKSLDFLKRVMDRL- 207 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~-~~~~k~~~~l~~a~~~~- 207 (385)
++|+.+++.+.+.+ .+++.+||||+|.+.+.+...............++.++++|+|+ +.+.||++.+++|+..+
T Consensus 162 ~~s~~~~~~~~~~~---~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~ 238 (396)
T cd03818 162 SPTRWQRSTFPAEL---RSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLL 238 (396)
T ss_pred CCCHHHHhhCcHhh---ccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHH
Confidence 99999999887654 36899999999999887653321111111111346678999997 99999999999999765
Q ss_pred ---CCceEEEEeCCc------------cHHHH-HHHHc---CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHH
Q 016648 208 ---PEARIAFIGDGP------------YREEL-EKMFT---GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL 268 (385)
Q Consensus 208 ---~~~~l~i~G~g~------------~~~~l-~~~~~---~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~ 268 (385)
++++++|+|++. ..+.+ +++.. ..+|+|+|+++++++..+|+.||++++||..|++|++++
T Consensus 239 ~~~~~~~lvivG~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~ll 318 (396)
T cd03818 239 RARPDARVVIVGGDGVSYGAPPPDGESWKQHMLDELGGRLDLSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLL 318 (396)
T ss_pred HHCCCcEEEEEcCCCcccCCCCCCcccHHHHHHHHhhcccCcceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHH
Confidence 789999999632 12222 33222 347999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHh-CCHHHHHHHHH
Q 016648 269 EAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK-YDWRAATRTIR 347 (385)
Q Consensus 269 Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~-~s~~~~~~~~~ 347 (385)
|||+||+|||+|+.++..|++ .++.+|++++++|+++++++|.++++|++.++++++++++.+++ |||+.++++++
T Consensus 319 EAmA~G~PVIas~~~g~~e~i---~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~~fs~~~~~~~~~ 395 (396)
T cd03818 319 EAMACGCLVVGSDTAPVREVI---TDGENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALRYDLLSVCLPRQL 395 (396)
T ss_pred HHHHCCCCEEEcCCCCchhhc---ccCCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 999999999999999999999 88899999999999999999999999999999999999999854 99999998875
No 25
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=100.00 E-value=1.4e-35 Score=268.66 Aligned_cols=273 Identities=30% Similarity=0.448 Sum_probs=229.7
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
....+.+.+++.+||+||+|..........+.++..++|++++.|+......... ..++..++.+|.+++
T Consensus 67 ~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~vi~ 136 (355)
T cd03799 67 QALVLARELRRLGIDHIHAHFGTTPATVAMLASRLGGIPYSFTAHGKDIFRSPDA----------IDLDEKLARADFVVA 136 (355)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCchHHHHHHHHHhcCCCEEEEEecccccccCch----------HHHHHHHhhCCEEEE
Confidence 3445667778899999999987444444555566668999999997432211110 356778899999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC---
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--- 207 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--- 207 (385)
+|+.+++.+.+.++.+..++.++|||+|.+.+.+... ....+++.++++|++.+.||++.++++++.+
T Consensus 137 ~s~~~~~~l~~~~~~~~~~~~vi~~~~d~~~~~~~~~---------~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~ 207 (355)
T cd03799 137 ISEYNRQQLIRLLGCDPDKIHVVHCGVDLERFPPRPP---------PPPGEPLRILSVGRLVEKKGLDYLLEALALLKDR 207 (355)
T ss_pred CCHHHHHHHHHhcCCCcccEEEEeCCcCHHHcCCccc---------cccCCCeEEEEEeeeccccCHHHHHHHHHHHhhc
Confidence 9999999999985556789999999999887765420 1234677899999999999999999999876
Q ss_pred -CCceEEEEeCCccHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcCCC------CCCcHHHHHHHhcCCc
Q 016648 208 -PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSES------ETLGLVVLEAMSSGIP 276 (385)
Q Consensus 208 -~~~~l~i~G~g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~------e~~~~~~~Ea~a~G~P 276 (385)
++++++++|.++..+.+++.+.+ .+|.+.|+++.+++..+|+.||++++||.. |++|++++|||++|+|
T Consensus 208 ~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~P 287 (355)
T cd03799 208 GIDFRLDIVGDGPLRDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLP 287 (355)
T ss_pred CCCeEEEEEECCccHHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCC
Confidence 47999999999888777776654 369999999999999999999999999998 9999999999999999
Q ss_pred EEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHH
Q 016648 277 VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRT 345 (385)
Q Consensus 277 vI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~ 345 (385)
+|+++.++.++++ .++.+|++++++|+++++++|.++++|++.+.++++++++.+ ++|||+..+++
T Consensus 288 vi~~~~~~~~~~i---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~ 354 (355)
T cd03799 288 VISTDVSGIPELV---EDGETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEEFDIRKQAAR 354 (355)
T ss_pred EEecCCCCcchhh---hCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 9999999999999 888899999999999999999999999999999999999998 56999998875
No 26
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=100.00 E-value=3.7e-35 Score=269.38 Aligned_cols=280 Identities=18% Similarity=0.229 Sum_probs=214.9
Q ss_pred HhhccCCCEEEeCCCchh--HHHHHHHHHHhCCCEEEEEecCCCcccc--cccccccchhHHHHHHHHHHhCCeEEEcCh
Q 016648 58 EVARFKPDIIHASSPGIM--VFGALIIAKLLCVPIVMSYHTHVPVYIP--RYTFSWLVKPMWLVIKFLHRAADLTLVPSV 133 (385)
Q Consensus 58 ~i~~~~pDiI~~~~~~~~--~~~~~~~~~~~~~p~v~~~h~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~ 133 (385)
++++.+||+||+|.+... ...+.++++..++|+|++.|+.+..... ........+...++++.+++.+|.++++|+
T Consensus 90 l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~vS~ 169 (415)
T cd03816 90 LYKLRPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGRLADYNLCVTK 169 (415)
T ss_pred HHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhhcCCEeeecCH
Confidence 456678999999975432 3345556777899999999986432111 111122334566778899999999999999
Q ss_pred hHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhh----------------hcCCCCCCcEEEEEeeccccccH
Q 016648 134 AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR----------------LSNGEPDKPLIVHVGRLGVEKSL 197 (385)
Q Consensus 134 ~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~i~~~G~~~~~k~~ 197 (385)
.+++.+.+ ++.+.+++.+||||.+ ..|.+.......... .....++..+++++|++.+.||+
T Consensus 170 ~~~~~l~~-~~~~~~ki~vI~Ng~~-~~f~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~~K~~ 247 (415)
T cd03816 170 AMKEDLQQ-FNNWKIRATVLYDRPP-EQFRPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTPDEDF 247 (415)
T ss_pred HHHHHHHh-hhccCCCeeecCCCCH-HHceeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccCCCCH
Confidence 99999988 4457899999999954 445443221111100 01112345678889999999999
Q ss_pred HHHHHHHHhC----------CCceEEEEeCCccHHHHHHHHcCC---CeEEe-cccChHHHHHHHHhCcEEEEcCC---C
Q 016648 198 DFLKRVMDRL----------PEARIAFIGDGPYREELEKMFTGM---PAVFT-GMLLGEELSQAYASGDVFVMPSE---S 260 (385)
Q Consensus 198 ~~l~~a~~~~----------~~~~l~i~G~g~~~~~l~~~~~~~---~i~~~-g~~~~~~~~~~~~~adi~v~ps~---~ 260 (385)
+.+++|++.+ ++++++|+|+|+..+.+++++.+. ++.+. |+++.+++..+|+.||+++.|+. .
T Consensus 248 ~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~ 327 (415)
T cd03816 248 GILLDALVAYEKSAATGPKLPKLLCIITGKGPLKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSG 327 (415)
T ss_pred HHHHHHHHHHHHhhcccccCCCEEEEEEecCccHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccc
Confidence 9999999865 468999999999988888887754 45544 78999999999999999987532 4
Q ss_pred CCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC---HHHHHHHHHHHHHHHHhC
Q 016648 261 ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN---QELRETMGQAARQEMEKY 337 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~a~~~~~~~ 337 (385)
+++|++++|||+||+|||+++.++..|++ +++.+|++++ |+++++++|..+++| ++.+++|++++++.. ++
T Consensus 328 ~~~p~~~~Eama~G~PVI~s~~~~~~eiv---~~~~~G~lv~--d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~-~~ 401 (415)
T cd03816 328 LDLPMKVVDMFGCGLPVCALDFKCIDELV---KHGENGLVFG--DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES-EL 401 (415)
T ss_pred cCCcHHHHHHHHcCCCEEEeCCCCHHHHh---cCCCCEEEEC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh-hc
Confidence 78999999999999999999999999999 8999999985 899999999999999 899999999999886 55
Q ss_pred CHHHHHHH
Q 016648 338 DWRAATRT 345 (385)
Q Consensus 338 s~~~~~~~ 345 (385)
+|+....+
T Consensus 402 ~~~~~~~~ 409 (415)
T cd03816 402 RWDENWDR 409 (415)
T ss_pred CHHHHHHH
Confidence 56554443
No 27
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=100.00 E-value=1.1e-34 Score=263.28 Aligned_cols=293 Identities=35% Similarity=0.559 Sum_probs=241.9
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
.....+.+.+++.+||+||++++....... ..++..++|+++++|+..+...... ............+..++.+|.++
T Consensus 72 ~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~-~~~~~~~~~~i~~~h~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~i 149 (374)
T cd03801 72 LLALRLRRLLRRERFDVVHAHDWLALLAAA-LAARLLGIPLVLTVHGLEFGRPGNE-LGLLLKLARALERRALRRADRII 149 (374)
T ss_pred HHHHHHHHHhhhcCCcEEEEechhHHHHHH-HHHHhcCCcEEEEeccchhhccccc-hhHHHHHHHHHHHHHHHhCCEEE
Confidence 345567788889999999999975554433 5667789999999999775543221 12223344557788899999999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC--
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-- 207 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~-- 207 (385)
+.|+.+.+.+.+.+..+..++.++|||++...+.+.. .... ......++.+.++++|++...||++.+++++..+
T Consensus 150 ~~s~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~ 226 (374)
T cd03801 150 AVSEATREELRELGGVPPEKITVIPNGVDTERFRPAP--RAAR-RRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRK 226 (374)
T ss_pred EecHHHHHHHHhcCCCCCCcEEEecCcccccccCccc--hHHH-hhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhh
Confidence 9999999999998875557999999999988775432 1111 1112344678899999999999999999999876
Q ss_pred --CCceEEEEeCCccHHHHHHHH----cCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 208 --PEARIAFIGDGPYREELEKMF----TGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 208 --~~~~l~i~G~g~~~~~l~~~~----~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
++++++++|.++....+++.+ ...++.+.|+++.+++.++|+.||++++|+..+++|++++|||++|+|||+++
T Consensus 227 ~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~ 306 (374)
T cd03801 227 EYPDVRLVIVGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASD 306 (374)
T ss_pred hcCCeEEEEEeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeC
Confidence 469999999888877777654 33479999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Q 016648 282 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQY 351 (385)
Q Consensus 282 ~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy 351 (385)
.++..+++ .++.+|+++++.|+++++++|.++++|++.++++++++++.. +.|+|+.+++++. .+|
T Consensus 307 ~~~~~~~~---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 373 (374)
T cd03801 307 VGGIPEVV---EDGETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAERFSWDRVAARTE-EVY 373 (374)
T ss_pred CCChhHHh---cCCcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhcCHHHHHHHHH-Hhh
Confidence 99999999 778999999999999999999999999999999999999766 6799999999997 465
No 28
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=2.2e-34 Score=261.10 Aligned_cols=271 Identities=30% Similarity=0.410 Sum_probs=221.6
Q ss_pred hhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHH
Q 016648 59 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 138 (385)
Q Consensus 59 i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 138 (385)
+...+||+||+|.+.......... ...++|++++.|+..... .........+++.+++.+|.++++|+...+.
T Consensus 79 ~~~~~~Dii~~~~~~~~~~~~~~~-~~~~~~~i~~~h~~~~~~------~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~ 151 (357)
T cd03795 79 KLAKKADVIHLHFPNPLADLALLL-LPRKKPVVVHWHSDIVKQ------KLLLKLYRPLQRRFLRRADAIVATSPNYAET 151 (357)
T ss_pred hcCCCCCEEEEecCcchHHHHHHH-hccCceEEEEEcChhhcc------chhhhhhhHHHHHHHHhcCEEEeCcHHHHHH
Confidence 567899999999875443332222 226889999999743211 1223334456778899999999999999998
Q ss_pred HHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCC
Q 016648 139 LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDG 218 (385)
Q Consensus 139 ~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g 218 (385)
+...+.. ..++.++|||+|.+.+.+...... .......+.++++|+|++.+.||++.++++++++.+++++++|+|
T Consensus 152 ~~~~~~~-~~~~~~i~~gi~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~l~i~G~g 227 (357)
T cd03795 152 SPVLRRF-RDKVRVIPLGLDPARYPRPDALEE---AIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALPDAPLVIVGEG 227 (357)
T ss_pred HHHhcCC-ccceEEecCCCChhhcCCcchhhh---HhhcCCCCCcEEEEecccccccCHHHHHHHHHhccCcEEEEEeCC
Confidence 8776653 378999999999887765432111 111234567899999999999999999999999989999999999
Q ss_pred ccHHHHHHHHc----CCCeEEecccChHHHHHHHHhCcEEEEcCC--CCCCcHHHHHHHhcCCcEEEecCCCCCcccccC
Q 016648 219 PYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED 292 (385)
Q Consensus 219 ~~~~~l~~~~~----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~ 292 (385)
+....+++.+. ..+|.+.|+++++++..+|+.||++++||. .|++|.+++|||++|+|||+++.++..+.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i--- 304 (357)
T cd03795 228 PLEAELEALAAALGLLDRVRFLGRLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYV--- 304 (357)
T ss_pred hhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHH---
Confidence 88887777663 347999999999999999999999999986 599999999999999999999999999988
Q ss_pred CC-CCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHH
Q 016648 293 QD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAAT 343 (385)
Q Consensus 293 ~~-~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~ 343 (385)
.+ +.+|++++++|+++++++|.++++|++.++++++++++.+ ++|||+.++
T Consensus 305 ~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 357 (357)
T cd03795 305 NLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEEFTADRMV 357 (357)
T ss_pred hhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHhcchHhhC
Confidence 65 8899999999999999999999999999999999999998 569998763
No 29
>PLN02501 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1.7e-35 Score=270.60 Aligned_cols=308 Identities=17% Similarity=0.127 Sum_probs=226.4
Q ss_pred cCCCCccccceeeccccccccCCCCcc----cccccccchHHHHHHhhccCCCEEEeCCCchhHHH--HHHHHHHhCCCE
Q 016648 17 FGLKTDLFFWILNFFHHIYSFPCPWYQ----KVPLSLALSPRIISEVARFKPDIIHASSPGIMVFG--ALIIAKLLCVPI 90 (385)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~--~~~~~~~~~~p~ 90 (385)
..+...+..|+.........+.+.+|. ....+....-.+.+.+..++|||||+++|..+++. +..++++.+ |+
T Consensus 384 ~eQe~~ir~wl~~r~g~~~~~~i~fYpg~~~~~~~SI~p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~-PV 462 (794)
T PLN02501 384 EEQESYIRNWLEERIGFKADFKISFYPGKFSKERRSIIPAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFN-HV 462 (794)
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEeecchhccCCccccchHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcC-Ce
Confidence 334445555554333333333333322 22345556778999999999999999999888877 778888888 99
Q ss_pred EEEEecCCCcccccccccccchhHHHHHHHHHHh--CCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCC
Q 016648 91 VMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA--ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS 168 (385)
Q Consensus 91 v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~ 168 (385)
|.++|..++.+.......++...........+.. ||.++++|..+.+ + +...+.. .||||.+.|.+....
T Consensus 463 VasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~VIaPS~atq~-L------~~~vI~n-VnGVDte~F~P~~r~ 534 (794)
T PLN02501 463 VGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHKVLRLSAATQD-L------PKSVICN-VHGVNPKFLKIGEKV 534 (794)
T ss_pred EEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCEEEcCCHHHHH-h------cccceee-cccccccccCCcchh
Confidence 9999999988777665555544333233233333 8999999977773 3 1222222 269999999876443
Q ss_pred hhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC----CCceEEEEeCCccHHHHHHHHcCC--CeEEecccChH
Q 016648 169 SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGM--PAVFTGMLLGE 242 (385)
Q Consensus 169 ~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~----~~~~l~i~G~g~~~~~l~~~~~~~--~i~~~g~~~~~ 242 (385)
... .+... ......++|+|++.+.||++.++++++.+ ++++++|+|+|+..+.+++++.+. ++.|+|.. +
T Consensus 535 ~~~-r~lgi-~~~~kgiLfVGRLa~EKGld~LLeAla~L~~~~pnvrLvIVGDGP~reeLe~la~eLgL~V~FLG~~--d 610 (794)
T PLN02501 535 AEE-RELGQ-QAFSKGAYFLGKMVWAKGYRELIDLLAKHKNELDGFNLDVFGNGEDAHEVQRAAKRLDLNLNFLKGR--D 610 (794)
T ss_pred HHH-HhcCC-ccccCceEEEEcccccCCHHHHHHHHHHHHhhCCCeEEEEEcCCccHHHHHHHHHHcCCEEEecCCC--C
Confidence 222 22221 12234589999999999999999999764 689999999999999998887655 47788887 5
Q ss_pred HHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHH
Q 016648 243 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 322 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~ 322 (385)
+...+|+.+|++|+||..|++|++++||||||+|||+++.++.. .+ .++.+|+++ +|.++++++|.++++++..
T Consensus 611 d~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e-~V---~~g~nGll~--~D~EafAeAI~~LLsd~~~ 684 (794)
T PLN02501 611 HADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNE-FF---RSFPNCLTY--KTSEDFVAKVKEALANEPQ 684 (794)
T ss_pred CHHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCc-eE---eecCCeEec--CCHHHHHHHHHHHHhCchh
Confidence 66689999999999999999999999999999999999999854 46 567788775 5999999999999998764
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 016648 323 RETMGQAARQEMEKYDWRAATRTIRN 348 (385)
Q Consensus 323 ~~~~~~~a~~~~~~~s~~~~~~~~~~ 348 (385)
...+.. ..++||+++++++++
T Consensus 685 rl~~~a-----~~~~SWeAaadrLle 705 (794)
T PLN02501 685 PLTPEQ-----RYNLSWEAATQRFME 705 (794)
T ss_pred hhHHHH-----HhhCCHHHHHHHHHH
Confidence 433221 348999999999975
No 30
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=100.00 E-value=7.1e-35 Score=267.14 Aligned_cols=284 Identities=21% Similarity=0.266 Sum_probs=217.8
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCccccc------cccccc----chhHHHHHHH
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPR------YTFSWL----VKPMWLVIKF 120 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~------~~~~~~----~~~~~~~~~~ 120 (385)
+.+.+.+.+++.++|+||+++.....+ ...+..++|+|++.|+........ ...++. .+.+..+++.
T Consensus 92 ~~~~l~~~~~~~~~D~v~~~~~~~~~~---~~~~~~~~p~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 168 (397)
T TIGR03087 92 LARWVNALLAAEPVDAIVVFSSAMAQY---VTPHVRGVPRIVDFVDVDSDKWLQYARTKRWPLRWIYRREGRLLLAYERA 168 (397)
T ss_pred HHHHHHHHHhhCCCCEEEEecccccee---ccccccCCCeEeehhhHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHH
Confidence 455677788889999999997533221 111356899999999853221111 001111 1223457788
Q ss_pred HHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHH
Q 016648 121 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFL 200 (385)
Q Consensus 121 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l 200 (385)
+++.+|.++++|+..++.+.+.++....++.++|||+|.+.|.+...... ...+++.+++|+|++.+.||++.+
T Consensus 169 ~~~~ad~vi~~S~~~~~~l~~~~~~~~~~v~vipngvd~~~f~~~~~~~~------~~~~~~~~ilf~G~l~~~k~~~~l 242 (397)
T TIGR03087 169 IAARFDAATFVSRAEAELFRRLAPEAAGRITAFPNGVDADFFSPDRDYPN------PYPPGKRVLVFTGAMDYWPNIDAV 242 (397)
T ss_pred HHhhCCeEEEcCHHHHHHHHHhCCCCCCCeEEeecccchhhcCCCccccC------CCCCCCcEEEEEEecCCccCHHHH
Confidence 99999999999999999998876555678999999999988765422110 012356789999999999999987
Q ss_pred HHH----H----HhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC-CCCCcHHHHHHH
Q 016648 201 KRV----M----DRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAM 271 (385)
Q Consensus 201 ~~a----~----~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~ 271 (385)
+.+ + +..|+++++|+|+|+. +.++++....+|++.|+++ ++..+|+.||++|+||. .||+|++++|||
T Consensus 243 ~~~~~~~~~~l~~~~p~~~l~ivG~g~~-~~~~~l~~~~~V~~~G~v~--~~~~~~~~adv~v~Ps~~~eG~~~~~lEAm 319 (397)
T TIGR03087 243 VWFAERVFPAVRARRPAAEFYIVGAKPS-PAVRALAALPGVTVTGSVA--DVRPYLAHAAVAVAPLRIARGIQNKVLEAM 319 (397)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEECCCCh-HHHHHhccCCCeEEeeecC--CHHHHHHhCCEEEecccccCCcccHHHHHH
Confidence 743 3 2347899999998875 4566666667899999994 78999999999999997 589999999999
Q ss_pred hcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Q 016648 272 SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQ 350 (385)
Q Consensus 272 a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~i 350 (385)
+||+|||+|+.+. ..+. ..+++|+++. +|+++++++|.++++|++.++++++++++.+ ++|||+..++++. ++
T Consensus 320 a~G~PVV~t~~~~-~~i~---~~~~~g~lv~-~~~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fsw~~~~~~~~-~~ 393 (397)
T TIGR03087 320 AMAKPVVASPEAA-EGID---ALPGAELLVA-ADPADFAAAILALLANPAEREELGQAARRRVLQHYHWPRNLARLD-AL 393 (397)
T ss_pred HcCCCEEecCccc-cccc---ccCCcceEeC-CCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HH
Confidence 9999999998754 2333 3455788886 8999999999999999999999999999998 5799999999996 67
Q ss_pred HH
Q 016648 351 YN 352 (385)
Q Consensus 351 y~ 352 (385)
|+
T Consensus 394 l~ 395 (397)
T TIGR03087 394 LE 395 (397)
T ss_pred hc
Confidence 64
No 31
>PRK10125 putative glycosyl transferase; Provisional
Probab=100.00 E-value=9.2e-35 Score=264.27 Aligned_cols=280 Identities=16% Similarity=0.146 Sum_probs=201.3
Q ss_pred chHHHHHHh-hccCCCEEEeCCCchh--HHHHH------HHHHHhCCCEEEEEecCCCcc--------ccccc-------
Q 016648 51 LSPRIISEV-ARFKPDIIHASSPGIM--VFGAL------IIAKLLCVPIVMSYHTHVPVY--------IPRYT------- 106 (385)
Q Consensus 51 ~~~~l~~~i-~~~~pDiI~~~~~~~~--~~~~~------~~~~~~~~p~v~~~h~~~~~~--------~~~~~------- 106 (385)
...++.+.+ ++++|||||+|+.... .+..+ +..+..++|+|+|+||.++.. ...+.
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 355666666 6889999999986432 12111 112345799999999988552 00110
Q ss_pred ----c-----cccch---hHHHHHHHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhh
Q 016648 107 ----F-----SWLVK---PMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWR 174 (385)
Q Consensus 107 ----~-----~~~~~---~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~ 174 (385)
+ ....+ ..+...+.+.+.++.++++|+++++.+.+.++ ..++.+||||+|.+.+.+....... +
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~~~--~~~i~vI~NGid~~~~~~~~~~~~~--~ 236 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYG--PGRCRIINNGIDMATEAILAELPPV--R 236 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHHcC--CCCEEEeCCCcCccccccccccccc--c
Confidence 0 00001 11112333445678999999999999887654 4689999999997533221111000 0
Q ss_pred hcCCCCCCcEEEEEeec--cccccHHHHHHHHHhC-CCceEEEEeCCccHHHHHHHHcCCCeEEecccCh-HHHHHHHHh
Q 016648 175 LSNGEPDKPLIVHVGRL--GVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLG-EELSQAYAS 250 (385)
Q Consensus 175 ~~~~~~~~~~i~~~G~~--~~~k~~~~l~~a~~~~-~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~-~~~~~~~~~ 250 (385)
..+++.+++++|+. .+.||++.+++|+..+ ++++++++|.++... ..++.+.|+..+ +++.++|+.
T Consensus 237 ---~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~~~~-------~~~v~~~g~~~~~~~l~~~y~~ 306 (405)
T PRK10125 237 ---ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFSPFT-------AGNVVNHGFETDKRKLMSALNQ 306 (405)
T ss_pred ---cCCCCCEEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCCccc-------ccceEEecCcCCHHHHHHHHHh
Confidence 13466789999984 4679999999999987 578999999875321 236888998744 789999999
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHH----H
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRET----M 326 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~----~ 326 (385)
||++|+||..|++|++++||||||+|||+|+.||.+|++ .++ +|++++++|+++|++.+ +++..++ +
T Consensus 307 aDvfV~pS~~Egfp~vilEAmA~G~PVVat~~gG~~Eiv---~~~-~G~lv~~~d~~~La~~~-----~~~~~~~~~~~~ 377 (405)
T PRK10125 307 MDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVL---QKS-GGKTVSEEEVLQLAQLS-----KPEIAQAVFGTT 377 (405)
T ss_pred CCEEEECCccccCcCHHHHHHHcCCCEEEeCCCChHHhE---eCC-cEEEECCCCHHHHHhcc-----CHHHHHHhhhhH
Confidence 999999999999999999999999999999999999998 554 89999999999999854 3333332 2
Q ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Q 016648 327 GQAARQEM-EKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 327 ~~~a~~~~-~~~s~~~~~~~~~~~iy~~~ 354 (385)
..++++.+ ++||++.++++++ ++|+++
T Consensus 378 ~~~~r~~~~~~fs~~~~~~~y~-~lY~~l 405 (405)
T PRK10125 378 LAEFSQRSRAAYSGQQMLEEYV-NFYQNL 405 (405)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH-HHHHhC
Confidence 34577776 5699999999998 699863
No 32
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=100.00 E-value=3.2e-35 Score=267.13 Aligned_cols=282 Identities=25% Similarity=0.382 Sum_probs=229.9
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
.......+.+.+||+||++++..... +..++|+++++|+..+...+..............++..++.+|.++++
T Consensus 74 ~~~~~~~~~~~~~Dii~~~~~~~~~~------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~ 147 (365)
T cd03809 74 RAGDRLLLLLLGLDLLHSPHNTAPLL------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITV 147 (365)
T ss_pred HHHHHHHhhhcCCCeeeecccccCcc------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEc
Confidence 33455566668999999998644322 567999999999987655544433333455667788899999999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCC---
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP--- 208 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~--- 208 (385)
|+.+++.+.+.++.+..++.++|||++...+....... ........++++++++|++.+.||++.+++++..++
T Consensus 148 s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~ 224 (365)
T cd03809 148 SEATKRDLLRYLGVPPDKIVVIPLGVDPRFRPPPAEAE---VLRALYLLPRPYFLYVGTIEPRKNLERLLEAFARLPAKG 224 (365)
T ss_pred cHHHHHHHHHHhCcCHHHEEeeccccCccccCCCchHH---HHHHhcCCCCCeEEEeCCCccccCHHHHHHHHHHHHHhc
Confidence 99999999998776678999999999988775543221 111223456789999999999999999999998873
Q ss_pred -CceEEEEeCCccH-HHHHH----HHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecC
Q 016648 209 -EARIAFIGDGPYR-EELEK----MFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 209 -~~~l~i~G~g~~~-~~l~~----~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~ 282 (385)
+++++++|.+... ..... .....++++.|+++.+++..+|+.||++++||..|++|++++|||++|+|||+++.
T Consensus 225 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~ 304 (365)
T cd03809 225 PDPKLVIVGKRGWLNEELLARLRELGLGDRVRFLGYVSDEELAALYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNI 304 (365)
T ss_pred CCCCEEEecCCccccHHHHHHHHHcCCCCeEEECCCCChhHHHHHHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCC
Confidence 4799999965432 22222 22344799999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 283 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 283 ~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
+++.|++ +.+|++++++|.++++++|.++++|++.+.++++++++.+++|+|+++++++.
T Consensus 305 ~~~~e~~-----~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~sw~~~~~~~~ 364 (365)
T cd03809 305 SSLPEVA-----GDAALYFDPLDPEALAAAIERLLEDPALREELRERGLARAKRFSWEKTARRTL 364 (365)
T ss_pred CCcccee-----cCceeeeCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 9999988 45688899999999999999999999999999999998888999999999875
No 33
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=100.00 E-value=1.2e-34 Score=268.40 Aligned_cols=279 Identities=18% Similarity=0.195 Sum_probs=212.1
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccc-cccchhHHHHHHHHHHhCCeEEE
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF-SWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
...+.+.+...++||+|++.+.....+ ++.....+|+++++|+........... ..+...+... ....+.+|.+++
T Consensus 200 ~~~f~~~L~~~~~di~i~dr~~~~~~~--~~~~~~~~~~v~~lH~~h~~~~~~~~~~~~~~~~y~~~-~~~~~~~D~iI~ 276 (500)
T TIGR02918 200 IAYFLKQLNLTKKDIIILDRSTGIGQA--VLENKGPAKLGVVVHAEHFSESATNETYILWNNYYEYQ-FSNADYIDFFIT 276 (500)
T ss_pred HHHHHHHHhCCCCCEEEEcCCcccchH--HHhcCCCceEEEEEChhhhcCccCcchhHHHHHHHHHH-HhchhhCCEEEE
Confidence 344445556678999999886543332 234556789999999843211111100 1011111111 123567899999
Q ss_pred cChhHHHHHHHhcc---cCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC
Q 016648 131 PSVAIGKDLEAARV---TAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 207 (385)
Q Consensus 131 ~s~~~~~~~~~~~~---~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~ 207 (385)
+|+..++.+.+.+. .+..++.++|||++...+.+. ....+..++++||+.+.||++.+++|+..+
T Consensus 277 ~S~~~~~~l~~~~~~~~~~~~ki~viP~g~~~~~~~~~------------~~r~~~~il~vGrl~~~Kg~~~li~A~~~l 344 (500)
T TIGR02918 277 ATDIQNQILKNQFKKYYNIEPRIYTIPVGSLDELQYPE------------QERKPFSIITASRLAKEKHIDWLVKAVVKA 344 (500)
T ss_pred CCHHHHHHHHHHhhhhcCCCCcEEEEcCCCcccccCcc------------cccCCeEEEEEeccccccCHHHHHHHHHHH
Confidence 99998888876542 235789999999865433221 122456899999999999999999998654
Q ss_pred ----CCceEEEEeCCccHHHHHHHHcCC----CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 208 ----PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 208 ----~~~~l~i~G~g~~~~~l~~~~~~~----~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
|++++.|+|+|+..+.+++++.+. +|.+.|+. ++.++|+.||++|+||..||+|++++|||+||+|||+
T Consensus 345 ~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~---~~~~~~~~adv~v~pS~~Egfgl~~lEAma~G~PVI~ 421 (500)
T TIGR02918 345 KKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHR---NLSEVYKDYELYLSASTSEGFGLTLMEAVGSGLGMIG 421 (500)
T ss_pred HhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCC---CHHHHHHhCCEEEEcCccccccHHHHHHHHhCCCEEE
Confidence 789999999999888888877643 58999975 6888999999999999999999999999999999999
Q ss_pred ecCC-CCCcccccCCCCCeeEeeCCC----C----HHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 016648 280 VRAG-GIPDIIPEDQDGKIGYLFNPG----D----LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQ 350 (385)
Q Consensus 280 s~~~-~~~e~~~~~~~~~~g~~~~~~----~----~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~i 350 (385)
++.+ |.+|++ .++.+|++++.+ | +++++++|.++++ ++.+++|+++|++.+++|||+.+++++. .+
T Consensus 422 ~dv~~G~~eiI---~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~-~~~~~~~~~~a~~~a~~fs~~~v~~~w~-~l 496 (500)
T TIGR02918 422 FDVNYGNPTFI---EDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFN-SNDIDAFHEYSYQIAEGFLTANIIEKWK-KL 496 (500)
T ss_pred ecCCCCCHHHc---cCCCCEEEEeCCccccchhHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhcCHHHHHHHHH-HH
Confidence 9986 889999 899999999842 3 8899999999995 5578999999999889999999999997 57
Q ss_pred HHH
Q 016648 351 YNA 353 (385)
Q Consensus 351 y~~ 353 (385)
+++
T Consensus 497 l~~ 499 (500)
T TIGR02918 497 VRE 499 (500)
T ss_pred Hhh
Confidence 765
No 34
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=100.00 E-value=1e-34 Score=263.14 Aligned_cols=271 Identities=25% Similarity=0.368 Sum_probs=219.0
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
....++.+.+++.+||+||+|+... .+.+.+.++..++|+++++|+...... ..+.+++++|.++
T Consensus 65 ~~~~~l~~~~~~~~~dii~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~~~--------------~~~~~~~~~~~vi 129 (355)
T cd03819 65 LNVARLRRLIREEKVDIVHARSRAP-AWSAYLAARRTRPPFVTTVHGFYSVNF--------------RYNAIMARGDRVI 129 (355)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCch-hHHHHHHHHhcCCCEEEEeCCchhhHH--------------HHHHHHHhcCEEE
Confidence 3456788889999999999998643 333445567779999999998653221 3345678899999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChh----hHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHH
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE----MRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 205 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~ 205 (385)
++|+.+.+.+.+.++.+..++.++|||+|...+.+...... .+.+. ...++.++++++|++...||++.++++++
T Consensus 130 ~~s~~~~~~~~~~~~~~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~ 208 (355)
T cd03819 130 AVSNFIADHIRENYGVDPDRIRVIPRGVDLDRFDPGAVPPERILALAREW-PLPKGKPVILLPGRLTRWKGQEVFIEALA 208 (355)
T ss_pred EeCHHHHHHHHHhcCCChhhEEEecCCccccccCccccchHHHHHHHHHc-CCCCCceEEEEeeccccccCHHHHHHHHH
Confidence 99999999999777767789999999999987765432211 11222 22456788999999999999999999998
Q ss_pred hC----CCceEEEEeCCccHHHH----HHHHc----CCCeEEecccChHHHHHHHHhCcEEEEcC-CCCCCcHHHHHHHh
Q 016648 206 RL----PEARIAFIGDGPYREEL----EKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPS-ESETLGLVVLEAMS 272 (385)
Q Consensus 206 ~~----~~~~l~i~G~g~~~~~l----~~~~~----~~~i~~~g~~~~~~~~~~~~~adi~v~ps-~~e~~~~~~~Ea~a 272 (385)
.+ ++++++++|.++..+.+ .+.+. ..+|.+.|+ .+++.++|+.||++++|| ..|++|++++|||+
T Consensus 209 ~l~~~~~~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a 286 (355)
T cd03819 209 RLKKDDPDVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGH--CSDMPAAYALADIVVSASTEPEAFGRTAVEAQA 286 (355)
T ss_pred HHHhcCCCeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCC--cccHHHHHHhCCEEEecCCCCCCCchHHHHHHh
Confidence 77 46999999987654332 22222 236999999 489999999999999999 78999999999999
Q ss_pred cCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhh-cCHHHHHHHHHHHHHHH-HhCCHHH
Q 016648 273 SGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL-YNQELRETMGQAARQEM-EKYDWRA 341 (385)
Q Consensus 273 ~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll-~~~~~~~~~~~~a~~~~-~~~s~~~ 341 (385)
+|+|||+++.++..+++ .++.+|++++++|+++++++|..++ .+++++.+++++|++.+ ++|+|+.
T Consensus 287 ~G~PvI~~~~~~~~e~i---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~f~~~~ 354 (355)
T cd03819 287 MGRPVIASDHGGARETV---RPGETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETLFSYDR 354 (355)
T ss_pred cCCCEEEcCCCCcHHHH---hCCCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999 8888999999999999999996555 48999999999999998 5699975
No 35
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=100.00 E-value=3.1e-34 Score=262.65 Aligned_cols=267 Identities=24% Similarity=0.310 Sum_probs=217.8
Q ss_pred ccCCCEEEeCCCchhHHHHHHHHHHhCCC-EEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHH
Q 016648 61 RFKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDL 139 (385)
Q Consensus 61 ~~~pDiI~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 139 (385)
+.++|++|.++..........+.+..+.+ +|.+.|+..... .. .........+.+++.+|.++++|+..++.+
T Consensus 125 ~~~~~v~~sy~~~~~~~~~~~l~~~~~~~~~i~~~Hg~d~~~--~~----~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l 198 (407)
T cd04946 125 DGQGTVFYSYWLHETAYALALLKKEYLRKRVISRAHGYDLYE--DR----YPSGYIPLRRYLLSSLDAVFPCSEQGRNYL 198 (407)
T ss_pred ccCceEEEEecCchHHHHHHHHHHhcCCceEEEEeccchhhh--hh----ccccchHHHHHHHhcCCEEEECCHHHHHHH
Confidence 45678888877655555555556666665 899999743211 10 011122345667899999999999999999
Q ss_pred HHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC----C--CceEE
Q 016648 140 EAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P--EARIA 213 (385)
Q Consensus 140 ~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~----~--~~~l~ 213 (385)
.+.++...+++.++++|++...+.+.. ..++.+.++++|++.+.||++.+++++.++ | +++++
T Consensus 199 ~~~~~~~~~ki~vi~~gv~~~~~~~~~-----------~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~ 267 (407)
T cd04946 199 QKRYPAYKEKIKVSYLGVSDPGIISKP-----------SKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWT 267 (407)
T ss_pred HHHCCCccccEEEEECCcccccccCCC-----------CCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEE
Confidence 988876778999999999876554321 234678899999999999999999999876 3 45678
Q ss_pred EEeCCccHHHHHHHHcC----CCeEEecccChHHHHHHHHh--CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCc
Q 016648 214 FIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 287 (385)
Q Consensus 214 i~G~g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e 287 (385)
++|+|+..+.+++++.. .+|.+.|+++++++..+|+. +|+++.||..||+|++++|||++|+|||+|+.++..|
T Consensus 268 iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg~~e 347 (407)
T cd04946 268 HIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGGTPE 347 (407)
T ss_pred EEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCCcHH
Confidence 89999888888877642 36999999999999999976 7889999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEeeCC-CCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 016648 288 IIPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 347 (385)
Q Consensus 288 ~~~~~~~~~~g~~~~~-~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~ 347 (385)
++ .++.+|+++++ +|+++++++|.++++|++.+++|+++|++.+ ++|+|+...+++.
T Consensus 348 ~i---~~~~~G~l~~~~~~~~~la~~I~~ll~~~~~~~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 348 IV---DNGGNGLLLSKDPTPNELVSSLSKFIDNEEEYQTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred Hh---cCCCcEEEeCCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 99 88889998876 4899999999999999999999999999998 5699999988874
No 36
>PLN02846 digalactosyldiacylglycerol synthase
Probab=100.00 E-value=1.7e-34 Score=260.65 Aligned_cols=296 Identities=14% Similarity=0.134 Sum_probs=213.5
Q ss_pred ccccccccCCCCccc-c---cccccchHHHHHHhhccCCCEEEeCCCchhHHH--HHHHHHHhCCCEEEEEecCCCcccc
Q 016648 30 FFHHIYSFPCPWYQK-V---PLSLALSPRIISEVARFKPDIIHASSPGIMVFG--ALIIAKLLCVPIVMSYHTHVPVYIP 103 (385)
Q Consensus 30 ~~~~~~~~~~~~~~~-~---~~~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~~~ 103 (385)
.......+++|++.. + ........++.+.+++++|||||+++|..+++. +..++++.++ +|.++|..++.+.+
T Consensus 79 ~v~r~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k~~~-vV~tyHT~y~~Y~~ 157 (462)
T PLN02846 79 RISFLPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTKFRL-VIGIVHTNYLEYVK 157 (462)
T ss_pred eEEEecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhcCCc-EEEEECCChHHHHH
Confidence 334556667776655 2 122234578999999999999999999777764 3444444444 78789997766554
Q ss_pred cccccccchhH-HHHHHHHHH-hCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCC
Q 016648 104 RYTFSWLVKPM-WLVIKFLHR-AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPD 181 (385)
Q Consensus 104 ~~~~~~~~~~~-~~~~~~~~~-~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 181 (385)
........... +.+.+++.+ ++|.++++|..+.+ +.+ .+...++|+|.+.|.+..... .... ...+
T Consensus 158 ~~~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~-l~~-------~~i~~v~GVd~~~f~~~~~~~--~~~~--~~~~ 225 (462)
T PLN02846 158 REKNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQD-YPR-------SIICNVHGVNPKFLEIGKLKL--EQQK--NGEQ 225 (462)
T ss_pred HhccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHH-Hhh-------CEEecCceechhhcCCCcccH--hhhc--CCCC
Confidence 33221212211 122233322 38999999986655 432 233445899999887654321 1111 1223
Q ss_pred --CcEEEEEeeccccccHHHHHHHHHhC----CCceEEEEeCCccHHHHHHHHcCCC--e-EEecccChHHHHHHHHhCc
Q 016648 182 --KPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGMP--A-VFTGMLLGEELSQAYASGD 252 (385)
Q Consensus 182 --~~~i~~~G~~~~~k~~~~l~~a~~~~----~~~~l~i~G~g~~~~~l~~~~~~~~--i-~~~g~~~~~~~~~~~~~ad 252 (385)
.+.++|+||+.+.||++.++++++.+ ++++++|+|+|++.+++++++.+.+ + .+.|... ..++|+.+|
T Consensus 226 ~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~~l~ivGdGp~~~~L~~~a~~l~l~~~vf~G~~~---~~~~~~~~D 302 (462)
T PLN02846 226 AFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGLEVDLYGSGEDSDEVKAAAEKLELDVRVYPGRDH---ADPLFHDYK 302 (462)
T ss_pred CcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCeEEEEECCCccHHHHHHHHHhcCCcEEEECCCCC---HHHHHHhCC
Confidence 24689999999999999999999864 6889999999999999999887654 2 4666543 336899999
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHH
Q 016648 253 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ 332 (385)
Q Consensus 253 i~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~ 332 (385)
++|+||..|++|++++||||||+|||+++.++ .+++ .++.+|+.++ |.+++++++..++.++. +.++.++
T Consensus 303 vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~-~~~v---~~~~ng~~~~--~~~~~a~ai~~~l~~~~--~~~~~~a-- 372 (462)
T PLN02846 303 VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS-NEFF---KQFPNCRTYD--DGKGFVRATLKALAEEP--APLTDAQ-- 372 (462)
T ss_pred EEEECCCcccchHHHHHHHHcCCcEEEecCCC-ccee---ecCCceEecC--CHHHHHHHHHHHHccCc--hhHHHHH--
Confidence 99999999999999999999999999999997 5888 7899998885 89999999999998542 2223322
Q ss_pred HHHhCCHHHHHHHHHHHHHHH
Q 016648 333 EMEKYDWRAATRTIRNEQYNA 353 (385)
Q Consensus 333 ~~~~~s~~~~~~~~~~~iy~~ 353 (385)
.++|||+..+++++ .+|+-
T Consensus 373 -~~~~SWe~~~~~l~-~~~~~ 391 (462)
T PLN02846 373 -RHELSWEAATERFL-RVADL 391 (462)
T ss_pred -HHhCCHHHHHHHHH-HHhcc
Confidence 25899999999998 57764
No 37
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=100.00 E-value=1.1e-34 Score=272.47 Aligned_cols=293 Identities=22% Similarity=0.304 Sum_probs=220.5
Q ss_pred HHHHHHhhc--cCCCEEEeCCCchhHHHHHHHHHH------hCCCEEEEEecCCCccccccc------ccc---------
Q 016648 53 PRIISEVAR--FKPDIIHASSPGIMVFGALIIAKL------LCVPIVMSYHTHVPVYIPRYT------FSW--------- 109 (385)
Q Consensus 53 ~~l~~~i~~--~~pDiI~~~~~~~~~~~~~~~~~~------~~~p~v~~~h~~~~~~~~~~~------~~~--------- 109 (385)
+.+.+.+++ .+|||||+|++.....+. .++.. .++|+|+++|+.......... ..+
T Consensus 117 ~~~~~~l~~~~~~pDviH~hd~~t~~~~~-~l~~~~~~~~~~~~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 195 (476)
T cd03791 117 RAALELLRRLGWKPDIIHCHDWHTGLVPA-LLKEKYADPFFKNIKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGL 195 (476)
T ss_pred HHHHHHHHhcCCCCcEEEECchHHHHHHH-HHHHhhccccCCCCCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhccc
Confidence 345555655 799999999986444333 33333 489999999996543211000 000
Q ss_pred cchhHHHHHHHHHHhCCeEEEcChhHHHHHHHh---------cccCCCcEEEeeCCCCCCCCCCCCCCh-----------
Q 016648 110 LVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA---------RVTAANKIRIWKKGVDSESFHPRFRSS----------- 169 (385)
Q Consensus 110 ~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~---------~~~~~~~i~vi~~~v~~~~~~~~~~~~----------- 169 (385)
........++..+..||.++++|+..++.+.+. ...+..++.+|+||+|.+.+.+.....
T Consensus 196 ~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~~~~~~ki~~I~NGid~~~~~p~~~~~~~~~~~~~~~~ 275 (476)
T cd03791 196 EFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLLRARAGKLSGILNGIDYDVWNPATDPHLPANYSADDLE 275 (476)
T ss_pred ccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHHHhccCCeEEEeCCCcCcccCccccchhhhcCCccccc
Confidence 000112367788999999999999999888642 222457999999999999887654321
Q ss_pred -------hhHhhhcCC-CCCCcEEEEEeeccccccHHHHHHHHHhC--CCceEEEEeCCcc--HHHHHHHHcC--CCeEE
Q 016648 170 -------EMRWRLSNG-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPY--REELEKMFTG--MPAVF 235 (385)
Q Consensus 170 -------~~~~~~~~~-~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G~g~~--~~~l~~~~~~--~~i~~ 235 (385)
..+.+.... .++.++++|+|++.+.||++.++++++.+ .+++++++|.|+. .+.++++..+ .++.+
T Consensus 276 ~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~ 355 (476)
T cd03791 276 GKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAV 355 (476)
T ss_pred cHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEE
Confidence 122222221 35788999999999999999999999887 3589999998753 3455555543 47877
Q ss_pred ecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCC------eeEeeCCCCHHHH
Q 016648 236 TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGK------IGYLFNPGDLDDC 309 (385)
Q Consensus 236 ~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~------~g~~~~~~~~~~l 309 (385)
.+..+.+++..+|+.||++++||..|++|++++|||+||+|||+++.++..|.+ .++. +|+++++.|++++
T Consensus 356 ~~~~~~~~~~~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v---~~~~~~~~~~~G~~~~~~~~~~l 432 (476)
T cd03791 356 LIGYDEALAHLIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTV---IDYNEDTGEGTGFVFEGYNADAL 432 (476)
T ss_pred EEeCCHHHHHHHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceE---eCCcCCCCCCCeEEeCCCCHHHH
Confidence 766677788899999999999999999999999999999999999999999999 7776 9999999999999
Q ss_pred HHHHhHhhc---CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 016648 310 LSKLEPLLY---NQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 352 (385)
Q Consensus 310 ~~~i~~ll~---~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~ 352 (385)
+++|.++++ +++.+.++++++.+ +.|||+.+++++. ++|+
T Consensus 433 ~~~i~~~l~~~~~~~~~~~~~~~~~~--~~fsw~~~a~~~~-~~y~ 475 (476)
T cd03791 433 LAALRRALALYRDPEAWRKLQRNAMA--QDFSWDRSAKEYL-ELYR 475 (476)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHhc--cCCChHHHHHHHH-HHHh
Confidence 999999875 56666666666543 4699999999997 6876
No 38
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=100.00 E-value=6.5e-34 Score=258.88 Aligned_cols=289 Identities=35% Similarity=0.596 Sum_probs=240.2
Q ss_pred ccchHHHHHHhh--ccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCC
Q 016648 49 LALSPRIISEVA--RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 126 (385)
Q Consensus 49 ~~~~~~l~~~i~--~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 126 (385)
......+.+.++ ..+||+||++.+..........++..++|++++.|+.......... ......+..++.+|
T Consensus 77 ~~~~~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~------~~~~~~~~~~~~~d 150 (377)
T cd03798 77 LLAARALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRKLGIPLVVTLHGSDVNLLPRKR------LLRALLRRALRRAD 150 (377)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHhcCCCEEEEeecchhcccCchh------hHHHHHHHHHhcCC
Confidence 344567788888 9999999999776666666667777889999999997654332221 34457788899999
Q ss_pred eEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHh
Q 016648 127 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 206 (385)
Q Consensus 127 ~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 206 (385)
.+++.|+..++.+.+.+ .+..++.++|||+|...+.+...... .+. ....+.+.++++|++...||++.++++++.
T Consensus 151 ~ii~~s~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~i~~~g~~~~~k~~~~li~~~~~ 226 (377)
T cd03798 151 AVIAVSEALADELKALG-IDPEKVTVIPNGVDTERFSPADRAEA--RKL-GLPEDKKVILFVGRLVPRKGIDYLIEALAR 226 (377)
T ss_pred eEEeCCHHHHHHHHHhc-CCCCceEEcCCCcCcccCCCcchHHH--Hhc-cCCCCceEEEEeccCccccCHHHHHHHHHH
Confidence 99999999999999876 46789999999999887765433211 111 124467889999999999999999999988
Q ss_pred C----CCceEEEEeCCccHHHHHHHHc----CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 207 L----PEARIAFIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 207 ~----~~~~l~i~G~g~~~~~l~~~~~----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
+ ++++++++|.++..+.+.+... ..+|.+.|+++++++..+|+.||++++|+..|++|.+++|||++|+|||
T Consensus 227 ~~~~~~~~~l~i~g~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI 306 (377)
T cd03798 227 LLKKRPDVHLVIVGDGPLREALEALAAELGLEDRVTFLGAVPHEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVV 306 (377)
T ss_pred HHhcCCCeEEEEEcCCcchHHHHHHHHhcCCcceEEEeCCCCHHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEE
Confidence 7 3799999999887777777654 3479999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Q 016648 279 GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 353 (385)
Q Consensus 279 ~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~ 353 (385)
+++.++..+++ .++.+|++++++|+++++++|.+++++++. ++..++++.+ ++|+|+..++++. ++|++
T Consensus 307 ~~~~~~~~~~~---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~ 376 (377)
T cd03798 307 ATDVGGIPEII---TDGENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVAERFSWENVAERLL-ELYRE 376 (377)
T ss_pred EecCCChHHHh---cCCcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHHHHhhHHHHHHHHH-HHHhh
Confidence 99999999999 888889999999999999999999999876 6667777776 6799999999997 57765
No 39
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=100.00 E-value=1.5e-33 Score=256.29 Aligned_cols=272 Identities=21% Similarity=0.223 Sum_probs=207.8
Q ss_pred ccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHH
Q 016648 61 RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 140 (385)
Q Consensus 61 ~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 140 (385)
+.++|++|...+.. .......+..+.|++++.|+..... ...........+..++..++.+|.++++|+..++.+.
T Consensus 84 ~~~~~~i~~~~~~~--~~~~~~~~~~~~~~v~~~h~~~~~~--~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 159 (363)
T cd04955 84 KRDIDHVHALGPAI--APFLPLLRLKGKKVVVNMDGLEWKR--AKWGRPAKRYLKFGEKLAVKFADRLIADSPGIKEYLK 159 (363)
T ss_pred cCCeEEEEecCccH--HHHHHHHHhcCCCEEEEccCcceee--cccccchhHHHHHHHHHHHhhccEEEeCCHHHHHHHH
Confidence 44555555555433 2233344556899999999853211 1111222334455677888999999999999999997
Q ss_pred HhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCC-CceEEEEeCCc
Q 016648 141 AARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIAFIGDGP 219 (385)
Q Consensus 141 ~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~-~~~l~i~G~g~ 219 (385)
+.++.+ . .++|||+|...+.+ ......+. ...+...++++|++.+.||++.++++++++. +++++++|+++
T Consensus 160 ~~~~~~--~-~~i~ngv~~~~~~~---~~~~~~~~--~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~l~ivG~~~ 231 (363)
T cd04955 160 EKYGRD--S-TYIPYGADHVVSSE---EDEILKKY--GLEPGRYYLLVGRIVPENNIDDLIEAFSKSNSGKKLVIVGNAD 231 (363)
T ss_pred HhcCCC--C-eeeCCCcChhhcch---hhhhHHhc--CCCCCcEEEEEecccccCCHHHHHHHHHhhccCceEEEEcCCC
Confidence 666532 3 89999999876543 11111122 2234457889999999999999999999885 69999999875
Q ss_pred cHHHHHHHHc-----CCCeEEecccChHHHHHHHHhCcEEEEcCCC-CCCcHHHHHHHhcCCcEEEecCCCCCcccccCC
Q 016648 220 YREELEKMFT-----GMPAVFTGMLLGEELSQAYASGDVFVMPSES-ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ 293 (385)
Q Consensus 220 ~~~~l~~~~~-----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~-e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~ 293 (385)
....+.+.+. ..+|+++|+++++++..+++.||++++||.. |++|++++|||+||+|||+|+.++..|++ .
T Consensus 232 ~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~~e~~---~ 308 (363)
T cd04955 232 HNTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRYAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFNREVL---G 308 (363)
T ss_pred CcchHHHHHHHHhCCCCcEEEccccChHHHHHHHHhCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCccceee---c
Confidence 4433333222 3479999999999999999999999999998 99999999999999999999999999998 4
Q ss_pred CCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Q 016648 294 DGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYN 352 (385)
Q Consensus 294 ~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~-~~s~~~~~~~~~~~iy~ 352 (385)
+ +|.+++++|. ++++|.++++|++.+.++++++++.++ +|||+.+++++. ++|+
T Consensus 309 ~--~g~~~~~~~~--l~~~i~~l~~~~~~~~~~~~~~~~~~~~~fs~~~~~~~~~-~~y~ 363 (363)
T cd04955 309 D--KAIYFKVGDD--LASLLEELEADPEEVSAMAKAARERIREKYTWEKIADQYE-ELYK 363 (363)
T ss_pred C--CeeEecCchH--HHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 3 7888886665 999999999999999999999999885 599999999997 5763
No 40
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=100.00 E-value=1.6e-34 Score=265.28 Aligned_cols=277 Identities=21% Similarity=0.272 Sum_probs=216.0
Q ss_pred hhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCccccccccc----ccchhHHHHHHHHHHhCCeEEEcChh
Q 016648 59 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFS----WLVKPMWLVIKFLHRAADLTLVPSVA 134 (385)
Q Consensus 59 i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ad~ii~~s~~ 134 (385)
++..++|+||++..... .. ......+.|++++.|. +......... ........+++..++.+|.++++|+.
T Consensus 90 ~~~~~~Dvi~~~~~~~~-~~--~~~~~~~~~~i~~~h~--~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~s~~ 164 (392)
T cd03805 90 LPDEKYDVFIVDQVSAC-VP--LLKLFSPSKILFYCHF--PDQLLAQRGSLLKRLYRKPFDWLEEFTTGMADKIVVNSNF 164 (392)
T ss_pred cccCCCCEEEEcCcchH-HH--HHHHhcCCcEEEEEec--ChHHhcCCCcHHHHHHHHHHHHHHHHHhhCceEEEEcChh
Confidence 56679999999875332 11 2223334899999884 2221111111 12223455678889999999999999
Q ss_pred HHHHHHHhcccCC-CcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC------
Q 016648 135 IGKDLEAARVTAA-NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL------ 207 (385)
Q Consensus 135 ~~~~~~~~~~~~~-~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~------ 207 (385)
.++.+.+.++... .++.+++||+|.+.+.+..... ..+.....++.++++++|++.+.||++.++++++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~vi~n~vd~~~~~~~~~~~--~~~~~~~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~ 242 (392)
T cd03805 165 TASVFKKTFPSLAKNPREVVYPCVDTDSFESTSEDP--DPGLLIPKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAE 242 (392)
T ss_pred HHHHHHHHhcccccCCcceeCCCcCHHHcCcccccc--cccccccCCCceEEEEEeeecccCChHHHHHHHHHHHhhccc
Confidence 9999887654322 3445999999988776543221 111122345778999999999999999999999775
Q ss_pred -CCceEEEEeCCcc--------HHHHHHHHcC-----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhc
Q 016648 208 -PEARIAFIGDGPY--------REELEKMFTG-----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSS 273 (385)
Q Consensus 208 -~~~~l~i~G~g~~--------~~~l~~~~~~-----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~ 273 (385)
++++++++|+++. .+++++++.+ .+|.|.|+++.+++..+|+.||++++||..|++|++++|||+|
T Consensus 243 ~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~ 322 (392)
T cd03805 243 FKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPSNEHFGIVPLEAMYA 322 (392)
T ss_pred ccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCCcCCCCchHHHHHHc
Confidence 4789999998754 2556665544 4799999999999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHH
Q 016648 274 GIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTI 346 (385)
Q Consensus 274 G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~ 346 (385)
|+|||+++.++..|++ .++.+|+++++ |+++++++|.+++++++.++++++++++.+ ++|||+.+++++
T Consensus 323 G~PvI~s~~~~~~e~i---~~~~~g~~~~~-~~~~~a~~i~~l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 392 (392)
T cd03805 323 GKPVIACNSGGPLETV---VDGETGFLCEP-TPEEFAEAMLKLANDPDLADRMGAAGRKRVKEKFSTEAFAERL 392 (392)
T ss_pred CCCEEEECCCCcHHHh---ccCCceEEeCC-CHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhcCHHHHhhhC
Confidence 9999999999999999 78889999876 899999999999999999999999999998 669999998763
No 41
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=100.00 E-value=3.9e-34 Score=259.60 Aligned_cols=288 Identities=28% Similarity=0.396 Sum_probs=231.0
Q ss_pred ccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHH-hCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCe
Q 016648 49 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKL-LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADL 127 (385)
Q Consensus 49 ~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ 127 (385)
.....++.+.+++.+||+||++......... ...+. .+.|++++.|+...... .+.........+.+.+.+|.
T Consensus 66 ~~~~~~~~~~~~~~~~div~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 139 (365)
T cd03807 66 PGALLRLYKLIRRLRPDVVHTWMYHADLYGG-LAARLAGVPPVIWGIRHSDLDLG-----KKSTRLVARLRRLLSSFIPL 139 (365)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccccccHHHH-HHHHhcCCCcEEEEecCCccccc-----chhHhHHHHHHHHhccccCe
Confidence 3345678889999999999999764433332 33344 68899999999764422 12233344567778889999
Q ss_pred EEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhH-hhhcCCCCCCcEEEEEeeccccccHHHHHHHHHh
Q 016648 128 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMR-WRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 206 (385)
Q Consensus 128 ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 206 (385)
++++|+...+.+.+.+ .+.+++.++|||+|...+.+........ .+.. .+++.++++++|++.+.||++.++++++.
T Consensus 140 ~i~~s~~~~~~~~~~~-~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~G~~~~~K~~~~li~a~~~ 217 (365)
T cd03807 140 IVANSAAAAEYHQAIG-YPPKKIVVIPNGVDTERFSPDLDARARLREELG-LPEDTFLIGIVARLHPQKDHATLLRAAAL 217 (365)
T ss_pred EEeccHHHHHHHHHcC-CChhheeEeCCCcCHHhcCCcccchHHHHHhcC-CCCCCeEEEEecccchhcCHHHHHHHHHH
Confidence 9999999999998864 4667899999999988776543322221 2222 23567889999999999999999999976
Q ss_pred C----CCceEEEEeCCccHHHHHHHHc-C----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcE
Q 016648 207 L----PEARIAFIGDGPYREELEKMFT-G----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 277 (385)
Q Consensus 207 ~----~~~~l~i~G~g~~~~~l~~~~~-~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 277 (385)
+ ++++++++|.++.....+.... . .++.+.|.. +++..+|+.||++++|+..|++|++++|||+||+||
T Consensus 218 l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~Pv 295 (365)
T cd03807 218 LLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGER--SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPV 295 (365)
T ss_pred HHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEcccc--ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCE
Confidence 5 5899999998877665555544 2 368889976 789999999999999999999999999999999999
Q ss_pred EEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Q 016648 278 VGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 352 (385)
Q Consensus 278 I~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~ 352 (385)
|+++.++..+++ .+ +|++++++|+++++++|.++++|++.+.++++++++.+ ++|||+..++++. ++|+
T Consensus 296 I~~~~~~~~e~~---~~--~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~y~ 365 (365)
T cd03807 296 VATDVGDNAELV---GD--TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEENFSIEAMVEAYE-ELYR 365 (365)
T ss_pred EEcCCCChHHHh---hc--CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 999999999999 45 88999999999999999999999999999999999998 5699999999997 5774
No 42
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=100.00 E-value=7.6e-34 Score=268.63 Aligned_cols=283 Identities=22% Similarity=0.292 Sum_probs=209.6
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCccccccccccc-----chhHH--HHHHHHHHhCCeEEEcChh
Q 016648 62 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWL-----VKPMW--LVIKFLHRAADLTLVPSVA 134 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~ad~ii~~s~~ 134 (385)
.+||+||+|.+ ..++.+..+++..|+|.+.+.|.............+. ..... ..+..++..||.||+.|..
T Consensus 384 ~~pDlIHahy~-d~glva~lla~~lgVP~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~q 462 (784)
T TIGR02470 384 GKPDLIIGNYS-DGNLVASLLARKLGVTQCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQ 462 (784)
T ss_pred CCCCEEEECCC-chHHHHHHHHHhcCCCEEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHH
Confidence 47999999997 3445567788999999999999863321111111111 00011 1245778889999999975
Q ss_pred HHH----HHHHh-----------c----c--cCCCcEEEeeCCCCCCCCCCCCCChhh------------------Hhhh
Q 016648 135 IGK----DLEAA-----------R----V--TAANKIRIWKKGVDSESFHPRFRSSEM------------------RWRL 175 (385)
Q Consensus 135 ~~~----~~~~~-----------~----~--~~~~~i~vi~~~v~~~~~~~~~~~~~~------------------~~~~ 175 (385)
... .+.++ + + .+..++.++|+|+|...|.|....... ....
T Consensus 463 Ei~~~~~~v~qY~s~~~ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~~~r~~~~~~~ie~ll~~~~~~~~~~ 542 (784)
T TIGR02470 463 EIAGTKDSVGQYESHQAFTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDKEKRLTNLHPEIEELLFSLEDNDEHY 542 (784)
T ss_pred HhhhhhhhhhhhhhcccccccceeeeecCccCCcCCeEEECCCcChhhcCCCCchhhhhhhhhcchhhhccchhhHHHHh
Confidence 422 22211 1 1 145789999999999987664332211 0111
Q ss_pred c-CCCCCCcEEEEEeeccccccHHHHHHHHHhC----CCceEEEEeCCcc------------HHHHHHHHcC----CCeE
Q 016648 176 S-NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPY------------REELEKMFTG----MPAV 234 (385)
Q Consensus 176 ~-~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~----~~~~l~i~G~g~~------------~~~l~~~~~~----~~i~ 234 (385)
. ...+++++|+++||+.+.||++.+++|+.++ ++++++|+|++.. .+.+.+++.+ .+|.
T Consensus 543 G~l~d~~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL~g~V~ 622 (784)
T TIGR02470 543 GYLKDPNKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQLHGQIR 622 (784)
T ss_pred CCCCCCCCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCCCCeEE
Confidence 1 1245778999999999999999999999765 3588999997542 1233344443 3699
Q ss_pred Eeccc-ChHHHHHHHH----hCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHH
Q 016648 235 FTGML-LGEELSQAYA----SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 309 (385)
Q Consensus 235 ~~g~~-~~~~~~~~~~----~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l 309 (385)
+.|+. +..+..++|+ .+|++++||..|+||++++|||+||+|||+|+.||..|++ .++.+|+++++.|++++
T Consensus 623 flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG~~EiV---~dg~tGfLVdp~D~eaL 699 (784)
T TIGR02470 623 WIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGGPLEII---QDGVSGFHIDPYHGEEA 699 (784)
T ss_pred EccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHh---cCCCcEEEeCCCCHHHH
Confidence 99975 4456555554 3579999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHhHhh----cCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHH
Q 016648 310 LSKLEPLL----YNQELRETMGQAARQEM-EKYDWRAATRTIRN 348 (385)
Q Consensus 310 ~~~i~~ll----~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~ 348 (385)
+++|.+++ .|++.+++++++|++.+ ++|||+..++++++
T Consensus 700 A~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~FSW~~~A~~ll~ 743 (784)
T TIGR02470 700 AEKIVDFFEKCDEDPSYWQKISQGGLQRIYEKYTWKIYSERLLT 743 (784)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999876 69999999999999987 67999999999974
No 43
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=100.00 E-value=1.2e-33 Score=256.56 Aligned_cols=281 Identities=26% Similarity=0.400 Sum_probs=220.0
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
...+.+.+++.+||+||+|.+....+..+......+.|++.+.|+.... ........+.....++.++++
T Consensus 68 ~~~~~~~~~~~~pdiv~~~~~~~~~~~~l~~~~~~~~~~v~~~h~~~~~----------~~~~~~~~~~~~~~~~~~~~~ 137 (360)
T cd04951 68 LWKLRKILRQFKPDVVHAHMFHANIFARLLRLFLPSPPLICTAHSKNEG----------GRLRMLAYRLTDFLSDLTTNV 137 (360)
T ss_pred HHHHHHHHHhcCCCEEEEcccchHHHHHHHHhhCCCCcEEEEeeccCch----------hHHHHHHHHHHhhccCceEEE
Confidence 3457778889999999999875433332222223467899999975321 111223445566678899999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCCh-hhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC---
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS-EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--- 207 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--- 207 (385)
|+...+.+.+.+..+.+++.++|||+|...+.+..... ..+.+.. ..+++++++++|++.+.||++.++++++++
T Consensus 138 s~~~~~~~~~~~~~~~~~~~~i~ng~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~ 216 (360)
T cd04951 138 SKEALDYFIASKAFNANKSFVVYNGIDTDRFRKDPARRLKIRNALG-VKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSD 216 (360)
T ss_pred cHHHHHHHHhccCCCcccEEEEccccchhhcCcchHHHHHHHHHcC-cCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhh
Confidence 99999999888766778999999999988765543221 1222222 245678899999999999999999999876
Q ss_pred -CCceEEEEeCCccHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecC
Q 016648 208 -PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 208 -~~~~l~i~G~g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~ 282 (385)
++++++|+|+|+..+.+++...+ .++.+.|++ +++..+|+.||++++||..|++|++++|||++|+|||+++.
T Consensus 217 ~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~ 294 (360)
T cd04951 217 YLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLR--DDIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVATDA 294 (360)
T ss_pred CCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEeccc--ccHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEEecC
Confidence 47999999999988877776653 369999987 78999999999999999999999999999999999999999
Q ss_pred CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc-CHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Q 016648 283 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 352 (385)
Q Consensus 283 ~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~ 352 (385)
++..+++ .+ +|..++++|++++++++.++++ +++.++.+..+ ++.+ ++|||+.+++++. ++|+
T Consensus 295 ~~~~e~i---~~--~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~-~~~~~~~~s~~~~~~~~~-~~y~ 359 (360)
T cd04951 295 GGVREVV---GD--SGLIVPISDPEALANKIDEILKMSGEERDIIGAR-RERIVKKFSINSIVQQWL-TLYT 359 (360)
T ss_pred CChhhEe---cC--CceEeCCCCHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHH-HHhh
Confidence 9999999 44 7888899999999999999994 55666666655 6665 6799999999997 6886
No 44
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=100.00 E-value=1.3e-33 Score=257.19 Aligned_cols=294 Identities=34% Similarity=0.576 Sum_probs=233.5
Q ss_pred cccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCccccccc--ccccchhHH-HHHHHHHHh
Q 016648 48 SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYT--FSWLVKPMW-LVIKFLHRA 124 (385)
Q Consensus 48 ~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~ 124 (385)
.+.....+.+.+++.+||+||++++......+...++..++|++++.|+.+........ ......... ..++.+++.
T Consensus 69 ~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (374)
T cd03817 69 PLPIPRALIIILKELGPDIVHTHTPFSLGLLGLRVARKLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNR 148 (374)
T ss_pred cccHHHHHHHHHhhcCCCEEEECCchhhhhHHHHHHHHcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhh
Confidence 34445566667889999999999875555556667788899999999987643221111 111111122 467888999
Q ss_pred CCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHH
Q 016648 125 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVM 204 (385)
Q Consensus 125 ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~ 204 (385)
+|.++++|+.+++.+.+.+. ..++.++|||+|...+.+...... +.+.. ..+++++++++|++.+.||++.+++++
T Consensus 149 ~d~i~~~s~~~~~~~~~~~~--~~~~~vi~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~~~ 224 (374)
T cd03817 149 CDAVIAPSEKIADLLREYGV--KRPIEVIPTGIDLDRFEPVDGDDE-RRKLG-IPEDEPVLLYVGRLAKEKNIDFLIRAF 224 (374)
T ss_pred CCEEEeccHHHHHHHHhcCC--CCceEEcCCccchhccCccchhHH-HHhcC-CCCCCeEEEEEeeeecccCHHHHHHHH
Confidence 99999999999999887653 356999999999887765432211 22221 245678899999999999999999999
Q ss_pred HhC----CCceEEEEeCCccHHHHHHHHc----CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCc
Q 016648 205 DRL----PEARIAFIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 276 (385)
Q Consensus 205 ~~~----~~~~l~i~G~g~~~~~l~~~~~----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 276 (385)
+.+ ++++++++|.++..+.+++... ..++.+.|+++++++..+|+.||++++|+..|++|.+++|||+||+|
T Consensus 225 ~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~P 304 (374)
T cd03817 225 ARLLKEEPDVKLVIVGDGPEREELEELARELGLADRVIFTGFVPREELPDYYKAADLFVFASTTETQGLVLLEAMAAGLP 304 (374)
T ss_pred HHHHHhCCCeEEEEEeCCchHHHHHHHHHHcCCCCcEEEeccCChHHHHHHHHHcCEEEecccccCcChHHHHHHHcCCc
Confidence 876 5799999999988777777653 23799999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 016648 277 VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 353 (385)
Q Consensus 277 vI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~ 353 (385)
||+++.++..+++ .++.+|+++++++. ++++++.+++++++.++++++++++.+++++ ..+++. .+|++
T Consensus 305 vI~~~~~~~~~~i---~~~~~g~~~~~~~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 373 (374)
T cd03817 305 VVAVDAPGLPDLV---ADGENGFLFPPGDE-ALAEALLRLLQDPELRRRLSKNAEESAEKFS---FAKKVE-KLYEE 373 (374)
T ss_pred EEEeCCCChhhhe---ecCceeEEeCCCCH-HHHHHHHHHHhChHHHHHHHHHHHHHHHHHH---HHHHHH-HHHhc
Confidence 9999999999999 88899999998777 9999999999999999999999999997766 445553 45553
No 45
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=100.00 E-value=7.8e-34 Score=256.77 Aligned_cols=274 Identities=20% Similarity=0.195 Sum_probs=212.7
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCE--EEEEecCCCcccccccccccchhHHHHHHHHHHhCCeE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPI--VMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 128 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~--v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 128 (385)
...++.+.+++.+||+||+|++... +.+..+++..+.|+ +.+.|...... . . .....+..+|.+
T Consensus 72 ~~~~l~~~l~~~~~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~~----~---~------~~~~~~~~~d~~ 137 (359)
T PRK09922 72 HVYNFSKWLKETQPDIVICIDVISC-LYANKARKKSGKQFKIFSWPHFSLDHK----K---H------AECKKITCADYH 137 (359)
T ss_pred HHHHHHHHHHhcCCCEEEEcCHHHH-HHHHHHHHHhCCCCeEEEEecCccccc----c---h------hhhhhhhcCCEE
Confidence 3567889999999999999986433 33444555566654 44445322110 0 0 011123789999
Q ss_pred EEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeecc--ccccHHHHHHHHHh
Q 016648 129 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG--VEKSLDFLKRVMDR 206 (385)
Q Consensus 129 i~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~--~~k~~~~l~~a~~~ 206 (385)
+++|+..++.+.+.+ .+.+++.++|||+|.+.+..... ..+++++++++|++. ..||++.+++++..
T Consensus 138 i~~S~~~~~~~~~~~-~~~~ki~vi~N~id~~~~~~~~~----------~~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~ 206 (359)
T PRK09922 138 LAISSGIKEQMMARG-ISAQRISVIYNPVEIKTIIIPPP----------ERDKPAVFLYVGRLKFEGQKNVKELFDGLSQ 206 (359)
T ss_pred EEcCHHHHHHHHHcC-CCHHHEEEEcCCCCHHHccCCCc----------ccCCCcEEEEEEEEecccCcCHHHHHHHHHh
Confidence 999999999998764 46678999999998654322111 123567899999986 45999999999988
Q ss_pred C-CCceEEEEeCCccHHHHHHHHcC----CCeEEecccCh--HHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 207 L-PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLG--EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 207 ~-~~~~l~i~G~g~~~~~l~~~~~~----~~i~~~g~~~~--~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
+ ++++++++|+|++.+.+++.+++ .+|.|+|++++ +++.++|+.+|++++||..||+|++++|||+||+|||+
T Consensus 207 ~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~ 286 (359)
T PRK09922 207 TTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCIS 286 (359)
T ss_pred hCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEE
Confidence 7 47999999999988888887764 36999999855 78999999999999999999999999999999999999
Q ss_pred ec-CCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 016648 280 VR-AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 280 s~-~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~ 355 (385)
++ .++..|++ .++.+|++++++|+++++++|.++++|++.+ ......+.+.+|+.+...+++. .+|+.++
T Consensus 287 s~~~~g~~eiv---~~~~~G~lv~~~d~~~la~~i~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 357 (359)
T PRK09922 287 SDCMSGPRDII---KPGLNGELYTPGNIDEFVGKLNKVISGEVKY--QHDAIPNSIERFYEVLYFKNLN-NALFSKL 357 (359)
T ss_pred eCCCCChHHHc---cCCCceEEECCCCHHHHHHHHHHHHhCcccC--CHHHHHHHHHHhhHHHHHHHHH-HHHHHHh
Confidence 99 89999999 8899999999999999999999999998754 1223333457788889999986 6777664
No 46
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=100.00 E-value=7.1e-34 Score=260.31 Aligned_cols=281 Identities=27% Similarity=0.407 Sum_probs=228.8
Q ss_pred hccCCCEEEeCCC-chhHHHHHHHHHHhCCCEEEEEecCCCcccccccc----cccchhHHHHHHHHHHhCCeEEEcChh
Q 016648 60 ARFKPDIIHASSP-GIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF----SWLVKPMWLVIKFLHRAADLTLVPSVA 134 (385)
Q Consensus 60 ~~~~pDiI~~~~~-~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ad~ii~~s~~ 134 (385)
+..+||+||++++ ..........++..++|+++++|+.++........ ....+....+++..++.+|.++++|+.
T Consensus 96 ~~~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~ 175 (394)
T cd03794 96 RRRRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERLIYRRADAIVVISPG 175 (394)
T ss_pred cccCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhHHHccCccccchHHHHHHHHHHHHHhcCCEEEEECHH
Confidence 3789999999984 33344455566667999999999976654322111 111144566788899999999999999
Q ss_pred HHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCC---Cce
Q 016648 135 IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP---EAR 211 (385)
Q Consensus 135 ~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~---~~~ 211 (385)
..+.+.. .+.+..++.++|||++...+.+...... ..+ ....+++..++++|++...||++.++++++.+. +++
T Consensus 176 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~ 252 (394)
T cd03794 176 MREYLVR-RGVPPEKISVIPNGVDLELFKPPPADES-LRK-ELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIR 252 (394)
T ss_pred HHHHHHh-cCCCcCceEEcCCCCCHHHcCCccchhh-hhh-ccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeE
Confidence 9999983 3446789999999999877655433221 111 123456788999999999999999999998873 799
Q ss_pred EEEEeCCccHHHHHHHHc---CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCC-----cHHHHHHHhcCCcEEEecCC
Q 016648 212 IAFIGDGPYREELEKMFT---GMPAVFTGMLLGEELSQAYASGDVFVMPSESETL-----GLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 212 l~i~G~g~~~~~l~~~~~---~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~-----~~~~~Ea~a~G~PvI~s~~~ 283 (385)
++++|.|+..+.+.+... ..++.+.|+++.+++.++|+.||++++|+..+++ |++++|||++|+|||+++.+
T Consensus 253 l~i~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~ 332 (394)
T cd03794 253 FLIVGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDG 332 (394)
T ss_pred EEEeCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCC
Confidence 999999988877776432 2479999999999999999999999999997754 88999999999999999999
Q ss_pred CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHH-hCCHHHHHHHH
Q 016648 284 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTI 346 (385)
Q Consensus 284 ~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~-~~s~~~~~~~~ 346 (385)
+..+.+ .++.+|++++++|+++++++|.++++|++.++++++++++.+. +|||+.+++++
T Consensus 333 ~~~~~~---~~~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 393 (394)
T cd03794 333 ESAELV---EEAGAGLVVPPGDPEALAAAILELLDDPEERAEMGENGRRYVEEKFSREKLAERL 393 (394)
T ss_pred Cchhhh---ccCCcceEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhcHHHHHHhc
Confidence 999999 7778999999999999999999999999999999999999985 79999999876
No 47
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=100.00 E-value=4.6e-33 Score=253.11 Aligned_cols=281 Identities=24% Similarity=0.318 Sum_probs=216.2
Q ss_pred cchHHHHHHhhccCCCEEEeCCCc-hh----HHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHh
Q 016648 50 ALSPRIISEVARFKPDIIHASSPG-IM----VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA 124 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~-~~----~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (385)
.....+.+.+++.+||+||++.+. .. ........+..++|+|+++|+..+... ........+.+++.
T Consensus 63 ~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--------~~~~~~~~~~~~~~ 134 (366)
T cd03822 63 LDYRRAARAIRLSGPDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEP--------RPGDRALLRLLLRR 134 (366)
T ss_pred hhHHHHHHHHhhcCCCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCcccc--------chhhhHHHHHHHhc
Confidence 345677888999999999998731 11 111112223479999999999621111 11223466778899
Q ss_pred CCeEEEcC-hhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHH
Q 016648 125 ADLTLVPS-VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRV 203 (385)
Q Consensus 125 ad~ii~~s-~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a 203 (385)
+|.++++| +...+.+...+ .+++.++||+++...+...... +......++++++++|++.+.||++.++++
T Consensus 135 ~d~ii~~s~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a 206 (366)
T cd03822 135 ADAVIVMSSELLRALLLRAY---PEKIAVIPHGVPDPPAEPPESL-----KALGGLDGRPVLLTFGLLRPYKGLELLLEA 206 (366)
T ss_pred CCEEEEeeHHHHHHHHhhcC---CCcEEEeCCCCcCcccCCchhh-----HhhcCCCCCeEEEEEeeccCCCCHHHHHHH
Confidence 99999996 33333333221 4699999999997766543211 111234567899999999999999999999
Q ss_pred HHhC----CCceEEEEeCCccHHH---------HHHHHcCCCeEEecc-cChHHHHHHHHhCcEEEEcCCCC--CCcHHH
Q 016648 204 MDRL----PEARIAFIGDGPYREE---------LEKMFTGMPAVFTGM-LLGEELSQAYASGDVFVMPSESE--TLGLVV 267 (385)
Q Consensus 204 ~~~~----~~~~l~i~G~g~~~~~---------l~~~~~~~~i~~~g~-~~~~~~~~~~~~adi~v~ps~~e--~~~~~~ 267 (385)
++.+ ++++++++|.+..... +++.....+|.++|. ++.+++..+|+.||++++||..| ++|.++
T Consensus 207 ~~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~ad~~v~ps~~e~~~~~~~~ 286 (366)
T cd03822 207 LPLLVAKHPDVRLLVAGETHPDLERYRGEAYALAERLGLADRVIFINRYLPDEELPELFSAADVVVLPYRSADQTQSGVL 286 (366)
T ss_pred HHHHHhhCCCeEEEEeccCccchhhhhhhhHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhcCEEEecccccccccchHH
Confidence 9765 5899999997653222 223323447999987 99999999999999999999999 999999
Q ss_pred HHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 268 LEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 268 ~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
+|||++|+|||+++.++ .+.+ .++.+|++++++|+++++++|..+++|++.+.++++++++.+++|||+.+++++.
T Consensus 287 ~Ea~a~G~PvI~~~~~~-~~~i---~~~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 362 (366)
T cd03822 287 AYAIGFGKPVISTPVGH-AEEV---LDGGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYARAMSWERVAERYL 362 (366)
T ss_pred HHHHHcCCCEEecCCCC-hhee---eeCCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 99999999999999999 6666 6788999999999999999999999999999999999999997799999999997
Q ss_pred HHHH
Q 016648 348 NEQY 351 (385)
Q Consensus 348 ~~iy 351 (385)
.+|
T Consensus 363 -~~~ 365 (366)
T cd03822 363 -RLL 365 (366)
T ss_pred -HHh
Confidence 565
No 48
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=100.00 E-value=1.2e-33 Score=257.24 Aligned_cols=271 Identities=19% Similarity=0.291 Sum_probs=204.5
Q ss_pred hhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHH
Q 016648 59 VARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKD 138 (385)
Q Consensus 59 i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~ 138 (385)
+...+||+||+|++....+ ....+..++|+|++.|....... ...+...+..++++|.+++.+.. .
T Consensus 81 ~~~~~~Dvv~~h~~~~~~~--~~~~~~~~~~~i~~~H~~~~~~~---------~~~~~~~~~~~~~~d~~i~~~~~---~ 146 (372)
T cd03792 81 LLDLDADVVVIHDPQPLAL--PLFKKKRGRPWIWRCHIDLSSPN---------RRVWDFLQPYIEDYDAAVFHLPE---Y 146 (372)
T ss_pred cccCCCCEEEECCCCchhH--HHhhhcCCCeEEEEeeeecCCCc---------HHHHHHHHHHHHhCCEEeecHHH---h
Confidence 3467999999998754322 22233348999999998543211 12233456678889999988832 2
Q ss_pred HHHhcccCCCcEEEeeCCCCCCCCCC-CCCC---hhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC----CCc
Q 016648 139 LEAARVTAANKIRIWKKGVDSESFHP-RFRS---SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEA 210 (385)
Q Consensus 139 ~~~~~~~~~~~i~vi~~~v~~~~~~~-~~~~---~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~----~~~ 210 (385)
. ..+ .+..++ ++|||+|...... .... ...+.+.. ..+++++++++||+.+.||++.++++++.+ +++
T Consensus 147 ~-~~~-~~~~~~-vipngvd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~ 222 (372)
T cd03792 147 V-PPQ-VPPRKV-IIPPSIDPLSGKNRELSPADIEYILEKYG-IDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDP 222 (372)
T ss_pred c-CCC-CCCceE-EeCCCCCCCccccCCCCHHHHHHHHHHhC-CCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCC
Confidence 2 222 234455 9999999753211 1111 12222322 245788999999999999999999998765 679
Q ss_pred eEEEEeCCccH-----HHHHHHH----cCCCeEEeccc--ChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 211 RIAFIGDGPYR-----EELEKMF----TGMPAVFTGML--LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 211 ~l~i~G~g~~~-----~~l~~~~----~~~~i~~~g~~--~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
+++++|+|+.. +.++++. ...++.+.|.. +.+++..+|+.||++++||..||+|++++|||+||+|||+
T Consensus 223 ~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~ 302 (372)
T cd03792 223 QLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIA 302 (372)
T ss_pred EEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEE
Confidence 99999987531 1223322 12368898886 8899999999999999999999999999999999999999
Q ss_pred ecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHH
Q 016648 280 VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNA 353 (385)
Q Consensus 280 s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~ 353 (385)
|+.++..+.+ .++.+|++++ +.++++++|.++++|++.+++|++++++.+ ++|+|+.++++++ .+|++
T Consensus 303 s~~~~~~~~i---~~~~~g~~~~--~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~~-~~~~~ 371 (372)
T cd03792 303 GPVGGIPLQI---EDGETGFLVD--TVEEAAVRILYLLRDPELRRKMGANAREHVRENFLITRHLKDYL-YLISK 371 (372)
T ss_pred cCCCCchhhc---ccCCceEEeC--CcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH-HHHHh
Confidence 9999999999 8899999887 678899999999999999999999999987 6799999999998 68775
No 49
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=100.00 E-value=3.1e-33 Score=254.26 Aligned_cols=292 Identities=27% Similarity=0.356 Sum_probs=221.5
Q ss_pred HHHHHhhccCCCEEEeCCCchhHHHHHHHHHH-hCCCEEEEEecCCCccccc----cccc-----------------ccc
Q 016648 54 RIISEVARFKPDIIHASSPGIMVFGALIIAKL-LCVPIVMSYHTHVPVYIPR----YTFS-----------------WLV 111 (385)
Q Consensus 54 ~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~-~~~p~v~~~h~~~~~~~~~----~~~~-----------------~~~ 111 (385)
.+.+.+++.+||+||+|+.....+....+.+. .++|+|+++|+.++..... .... ...
T Consensus 42 ~~~~~~~~~~~diih~~~~~~~~~~~~~~~~~~~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (365)
T cd03825 42 ALISKIEIINADIVHLHWIHGGFLSIEDLSKLLDRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLS 121 (365)
T ss_pred hhhhChhcccCCEEEEEccccCccCHHHHHHHHcCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHH
Confidence 55677788999999999753332222222233 4999999999965432110 0000 011
Q ss_pred h-hHHHHHHHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEee
Q 016648 112 K-PMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR 190 (385)
Q Consensus 112 ~-~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~ 190 (385)
. ............++.++++|+...+.+.+.+..+..++.++|||+|.+.+.+... ...+.... .+++..++++.|+
T Consensus 122 ~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~vi~ngi~~~~~~~~~~-~~~~~~~~-~~~~~~~i~~~~~ 199 (365)
T cd03825 122 RWIWRRKRKAWADLNLTIVAPSRWLADCARSSSLFKGIPIEVIPNGIDTTIFRPRDK-REARKRLG-LPADKKIILFGAV 199 (365)
T ss_pred HHHHHHHHHHhccCCcEEEehhHHHHHHHHhccccCCCceEEeCCCCcccccCCCcH-HHHHHHhC-CCCCCeEEEEEec
Confidence 1 1111222233567889999999999998887667789999999999987755422 22222222 2344566666666
Q ss_pred ccc--cccHHHHHHHHHhC-----CCceEEEEeCCccHHHHHHHHcCCCeEEecccC-hHHHHHHHHhCcEEEEcCCCCC
Q 016648 191 LGV--EKSLDFLKRVMDRL-----PEARIAFIGDGPYREELEKMFTGMPAVFTGMLL-GEELSQAYASGDVFVMPSESET 262 (385)
Q Consensus 191 ~~~--~k~~~~l~~a~~~~-----~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~-~~~~~~~~~~adi~v~ps~~e~ 262 (385)
... .||++.++++++.+ ++++++++|+++..... ....++.++|+++ .+++..+|+.||++++||..|+
T Consensus 200 ~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~~~~~---~~~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~~e~ 276 (365)
T cd03825 200 GGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDPEIPP---DLPFPVHYLGSLNDDESLALIYSAADVFVVPSLQEN 276 (365)
T ss_pred CCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCchhhhc---cCCCceEecCCcCCHHHHHHHHHhCCEEEecccccc
Confidence 655 89999999999876 46889999987654321 2244799999999 6789999999999999999999
Q ss_pred CcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHH
Q 016648 263 LGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRA 341 (385)
Q Consensus 263 ~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~ 341 (385)
+|.+++|||++|+|||+++.++..+++ .++.+|++++..|++++++++.++++|++.+.++++++++.+ ++|||+.
T Consensus 277 ~g~~~~Eam~~g~PvI~~~~~~~~e~~---~~~~~g~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~s~~~ 353 (365)
T cd03825 277 FPNTAIEALACGTPVVAFDVGGIPDIV---DHGVTGYLAKPGDPEDLAEGIEWLLADPDEREELGEAARELAENEFDSRV 353 (365)
T ss_pred ccHHHHHHHhcCCCEEEecCCCChhhe---eCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999999999999999999999 788899999999999999999999999999999999999998 5699999
Q ss_pred HHHHHHHHHHHHH
Q 016648 342 ATRTIRNEQYNAA 354 (385)
Q Consensus 342 ~~~~~~~~iy~~~ 354 (385)
+++++. .+|+++
T Consensus 354 ~~~~~~-~~y~~~ 365 (365)
T cd03825 354 QAKRYL-SLYEEL 365 (365)
T ss_pred HHHHHH-HHHhhC
Confidence 999997 688763
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=100.00 E-value=5.6e-33 Score=251.72 Aligned_cols=271 Identities=25% Similarity=0.403 Sum_probs=222.2
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
....+.+++++.+||+||++.+..........++..++|+++++|+.+...... .......|.+++
T Consensus 84 ~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~i~~~hd~~~~~~~~--------------~~~~~~~d~ii~ 149 (359)
T cd03823 84 VVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARDRGIPIVLTLHDYWLICPRQ--------------GLFKKGGDAVIA 149 (359)
T ss_pred HHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHhcCCCEEEEEeeeeeecchh--------------hhhccCCCEEEE
Confidence 355677888999999999998755555455566778899999999865322111 112233499999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCC--
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP-- 208 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~-- 208 (385)
+|+...+.+.+.+. +..++.+++||+|...+.+... ....++++++++|++...||++.++++++.++
T Consensus 150 ~s~~~~~~~~~~~~-~~~~~~vi~n~~~~~~~~~~~~---------~~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~ 219 (359)
T cd03823 150 PSRFLLDRYVANGL-FAEKISVIRNGIDLDRAKRPRR---------APPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPRG 219 (359)
T ss_pred eCHHHHHHHHHcCC-CccceEEecCCcChhhcccccc---------CCCCCceEEEEEecCccccCHHHHHHHHHHHHhc
Confidence 99999999988765 3578999999999887654321 12456788999999999999999999999885
Q ss_pred CceEEEEeCCccHHHHHHHH-cCCCeEEecccChHHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEecCCCCC
Q 016648 209 EARIAFIGDGPYREELEKMF-TGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIP 286 (385)
Q Consensus 209 ~~~l~i~G~g~~~~~l~~~~-~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~~~~~~ 286 (385)
+++++++|.+.......... ...++.+.|+++.+++.++|+.||++++||. .|++|++++|||+||+|||+++.++..
T Consensus 220 ~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~ 299 (359)
T cd03823 220 DIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA 299 (359)
T ss_pred CcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH
Confidence 89999999887655443322 2347999999999999999999999999998 799999999999999999999999999
Q ss_pred cccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 016648 287 DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 352 (385)
Q Consensus 287 e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~ 352 (385)
+++ .++.+|++++++|++++++++.++++|++.++++++++++..+. +.+++++. ++|+
T Consensus 300 e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~ 358 (359)
T cd03823 300 ELV---RDGVNGLLFPPGDAEDLAAALERLIDDPDLLERLRAGIEPPRSI---EDQAEEYL-KLYR 358 (359)
T ss_pred HHh---cCCCcEEEECCCCHHHHHHHHHHHHhChHHHHHHHHhHHHhhhH---HHHHHHHH-HHhh
Confidence 999 78889999999999999999999999999999999988876544 88888886 5775
No 51
>PLN00142 sucrose synthase
Probab=100.00 E-value=5.5e-33 Score=262.80 Aligned_cols=283 Identities=20% Similarity=0.242 Sum_probs=209.9
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCccccccccc-----ccchhH--HHHHHHHHHhCCeEEEcChh
Q 016648 62 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFS-----WLVKPM--WLVIKFLHRAADLTLVPSVA 134 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~ad~ii~~s~~ 134 (385)
.+||+||.|.+ ..++.+..+++..|+|.+.+.|............. ...... ...+..++..||.||+.|..
T Consensus 407 ~~PDlIHaHYw-dsg~vA~~La~~lgVP~v~T~HsL~k~K~~~~~~~~~~~e~~y~~~~r~~aE~~a~~~Ad~IIasT~q 485 (815)
T PLN00142 407 GKPDLIIGNYS-DGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKFDDKYHFSCQFTADLIAMNHADFIITSTYQ 485 (815)
T ss_pred CCCCEEEECCc-cHHHHHHHHHHHhCCCEEEEcccchhhhccccCCcccccchhhhhhhchHHHHHHHHhhhHHHhCcHH
Confidence 36999999986 44566778899999999999997532211110000 000111 12467788899999999977
Q ss_pred HHHH-------HHHhc------------c--cCCCcEEEeeCCCCCCCCCCCCCChhh------------------Hhhh
Q 016648 135 IGKD-------LEAAR------------V--TAANKIRIWKKGVDSESFHPRFRSSEM------------------RWRL 175 (385)
Q Consensus 135 ~~~~-------~~~~~------------~--~~~~~i~vi~~~v~~~~~~~~~~~~~~------------------~~~~ 175 (385)
.... +..+. + ....++.++|+|+|...|.|....... ....
T Consensus 486 Ei~g~~~~i~qy~sh~~f~~p~L~rvv~GId~~~~ki~VVppGvD~~~F~P~~~~~~rl~~l~n~I~~~l~~~~~~~e~l 565 (815)
T PLN00142 486 EIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEKQKRLTSLHPSIEELLYSPEQNDEHI 565 (815)
T ss_pred HHhcccchhhhhhcccccccchhhhhhccccccccCeeEECCCCChhhcCCCChHHhhHHhhcccchhhcCChHHHHHHh
Confidence 6642 22221 1 114589999999999977653321110 1112
Q ss_pred cC-CCCCCcEEEEEeeccccccHHHHHHHHHhC----CCceEEEEeCCc------cH------HHHHHHHcC----CCeE
Q 016648 176 SN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGP------YR------EELEKMFTG----MPAV 234 (385)
Q Consensus 176 ~~-~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~----~~~~l~i~G~g~------~~------~~l~~~~~~----~~i~ 234 (385)
.. ..+++++|+++||+.+.||++.+++|+.++ ++++++|+|++. .. ..+.+++.+ .+|.
T Consensus 566 g~l~~~~kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL~~~V~ 645 (815)
T PLN00142 566 GYLKDRKKPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNLKGQFR 645 (815)
T ss_pred CCccCCCCcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCCCCcEE
Confidence 11 234567999999999999999999999765 468999999762 11 223444443 3588
Q ss_pred Eeccc----ChHHHHHHHHh-CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHH
Q 016648 235 FTGML----LGEELSQAYAS-GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 309 (385)
Q Consensus 235 ~~g~~----~~~~~~~~~~~-adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l 309 (385)
+.|.. +.+++..+++. +|++++||..|+||++++|||+||+|||+|+.||..|++ .++.+|++++++|++++
T Consensus 646 flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG~~EIV---~dG~tG~LV~P~D~eaL 722 (815)
T PLN00142 646 WIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGGPAEII---VDGVSGFHIDPYHGDEA 722 (815)
T ss_pred EcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCCHHHHh---cCCCcEEEeCCCCHHHH
Confidence 88854 33677777774 799999999999999999999999999999999999999 89999999999999999
Q ss_pred HHHHhHh----hcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHH
Q 016648 310 LSKLEPL----LYNQELRETMGQAARQEM-EKYDWRAATRTIRN 348 (385)
Q Consensus 310 ~~~i~~l----l~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~ 348 (385)
+++|.++ ++|++.+++++++|++.+ ++|||+..++++++
T Consensus 723 A~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e~FSWe~~A~rll~ 766 (815)
T PLN00142 723 ANKIADFFEKCKEDPSYWNKISDAGLQRIYECYTWKIYAERLLT 766 (815)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9998764 479999999999999998 67999999999984
No 52
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=100.00 E-value=1e-32 Score=249.59 Aligned_cols=279 Identities=27% Similarity=0.380 Sum_probs=225.3
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHH-HhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAK-LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
....+.+.+++.+||+||++......+..+ .++ ..+.+++...|+......... ........+++...+.+|.++
T Consensus 68 ~~~~~~~~~~~~~~dvv~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~d~ii 143 (359)
T cd03808 68 ALLRLYRLLRKERPDIVHTHTPKPGILGRL-AARLAGVPKVIYTVHGLGFVFTSGG---LKRRLYLLLERLALRFTDKVI 143 (359)
T ss_pred HHHHHHHHHHhcCCCEEEEccccchhHHHH-HHHHcCCCCEEEEecCcchhhccch---hHHHHHHHHHHHHHhhccEEE
Confidence 355678888999999999997644333333 333 456677888887643322221 133445567788899999999
Q ss_pred EcChhHHHHHHHhcccC-CCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC-
Q 016648 130 VPSVAIGKDLEAARVTA-ANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL- 207 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~-~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~- 207 (385)
+.|+...+.+.+.+..+ ..++.+.+++++...+.+.... ..++++.++++|++.+.||++.++++++.+
T Consensus 144 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~ 214 (359)
T cd03808 144 FQNEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEP---------IPEDDPVFLFVARLLKDKGIDELLEAARILK 214 (359)
T ss_pred EcCHHHHHHHHHhcCCCcCceEEecCCCCChhhcCccccc---------cCCCCcEEEEEeccccccCHHHHHHHHHHHH
Confidence 99999999999887543 4677888999988776544221 134678999999999999999999999876
Q ss_pred ---CCceEEEEeCCccHHHHHH-----HHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 208 ---PEARIAFIGDGPYREELEK-----MFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 208 ---~~~~l~i~G~g~~~~~l~~-----~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
++++++++|.++....... .....+|.+.|+. +++.++|+.||++++|+..|++|++++|||++|+|||+
T Consensus 215 ~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~ 292 (359)
T cd03808 215 AKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFR--DDVPELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIA 292 (359)
T ss_pred hcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeecc--ccHHHHHHhccEEEecCcccCcchHHHHHHHcCCCEEE
Confidence 6799999998775544432 2223479999994 89999999999999999999999999999999999999
Q ss_pred ecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 016648 280 VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 347 (385)
Q Consensus 280 s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~ 347 (385)
++.++..+++ .++.+|++++++|+++++++|.+++.|++.+.++++++++.+ ++|+|+.+++++.
T Consensus 293 s~~~~~~~~i---~~~~~g~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 358 (359)
T cd03808 293 TDVPGCREAV---IDGVNGFLVPPGDAEALADAIERLIEDPELRARMGQAARKRAEEEFDEEIVVKKLL 358 (359)
T ss_pred ecCCCchhhh---hcCcceEEECCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 9999999999 788999999999999999999999999999999999999996 7799999998874
No 53
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=100.00 E-value=1.1e-32 Score=250.97 Aligned_cols=282 Identities=27% Similarity=0.383 Sum_probs=218.3
Q ss_pred HHHHhhccCCCEEEeCCC-chhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchh--HHHHHHHHHHhCCeEEEc
Q 016648 55 IISEVARFKPDIIHASSP-GIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKP--MWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 55 l~~~i~~~~pDiI~~~~~-~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ad~ii~~ 131 (385)
........+||+||+|+. ..........++..++|++++.|+........ .....+. .....+...+.++.+++.
T Consensus 79 ~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~ 156 (375)
T cd03821 79 AWLRLNIREADIVHVHGLWSYPSLAAARAARKYGIPYVVSPHGMLDPWALP--HKALKKRLAWFLFERRLLQAAAAVHAT 156 (375)
T ss_pred HHHHHhCCCCCEEEEecccchHHHHHHHHHHHhCCCEEEEccccccccccc--cchhhhHHHHHHHHHHHHhcCCEEEEC
Confidence 334445678999999984 33344445566778999999999875443211 1111111 123456778889999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC----
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL---- 207 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~---- 207 (385)
|........... +..++.++|||+|.+.+.+...... +.. ....+++++++++|++.+.||++.++++++.+
T Consensus 157 s~~~~~~~~~~~--~~~~~~vi~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~ 232 (375)
T cd03821 157 SEQEAAEIRRLG--LKAPIAVIPNGVDIPPFAALPSRGR-RRK-FPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERF 232 (375)
T ss_pred CHHHHHHHHhhC--CcccEEEcCCCcChhccCcchhhhh-hhh-ccCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhc
Confidence 987777776543 4678999999999887765432221 111 12345778999999999999999999999876
Q ss_pred CCceEEEEeCCcc--HHHHHHHHc----CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 208 PEARIAFIGDGPY--REELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 208 ~~~~l~i~G~g~~--~~~l~~~~~----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
++++++++|.+.. ...++..+. ..+|.++|+++++++..+|+.||++++||..|++|++++|||+||+|||+++
T Consensus 233 ~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~ 312 (375)
T cd03821 233 PDWHLVIAGPDEGGYRAELKQIAAALGLEDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTD 312 (375)
T ss_pred CCeEEEEECCCCcchHHHHHHHHHhcCccceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcC
Confidence 5799999996543 333333222 3479999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 016648 282 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 347 (385)
Q Consensus 282 ~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~ 347 (385)
.++..+++ .+ ..|++++. +.++++++|.+++++++.++++++++++.+ ++|+|+.++++++
T Consensus 313 ~~~~~~~~---~~-~~~~~~~~-~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 374 (375)
T cd03821 313 KVPWQELI---EY-GCGWVVDD-DVDALAAALRRALELPQRLKAMGENGRALVEERFSWTAIAQQLL 374 (375)
T ss_pred CCCHHHHh---hc-CceEEeCC-ChHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 99999999 66 78887765 559999999999999999999999999996 7799999999875
No 54
>PHA01630 putative group 1 glycosyl transferase
Probab=100.00 E-value=7.7e-33 Score=244.11 Aligned_cols=238 Identities=16% Similarity=0.198 Sum_probs=184.4
Q ss_pred HHhCCCEEEEEecCCCcccccccccccchhHHHHHHHH-HHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCC
Q 016648 84 KLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFL-HRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF 162 (385)
Q Consensus 84 ~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~ 162 (385)
...|+|+++++|+.. +....++.+. .+.+|.++++|+.+++.+.+.+....+++.+||||+|.+.|
T Consensus 66 ~~~~~~~v~e~~~~~-------------~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~~~g~~~~~~i~vIpNGVd~~~f 132 (331)
T PHA01630 66 PHVGKNIVFEVADTD-------------AISHTALYFFRNQPVDEIVVPSQWSKNAFYTSGLKIPQPIYVIPHNLNPRMF 132 (331)
T ss_pred cccCCceEEEEEeec-------------hhhHHHHHHHhhccCCEEEECCHHHHHHHHHcCCCCCCCEEEECCCCCHHHc
Confidence 446889999999821 1122355666 68899999999999999987754224689999999998877
Q ss_pred CCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC----CCceEEEEeCCccHHHHHHHHcCCCeEEecc
Q 016648 163 HPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMFTGMPAVFTGM 238 (385)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~----~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~ 238 (385)
.+... ...+..++++.|++.+.||++.+++|++.+ ++++++++|++.....+.. . ..+.+.
T Consensus 133 ~~~~~----------~~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~~~~l~~----~-~~~~~~ 197 (331)
T PHA01630 133 EYKPK----------EKPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNMLDPRLFG----L-NGVKTP 197 (331)
T ss_pred CCCcc----------ccCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCcccchhhcc----c-cceecc
Confidence 54421 122455677888899999999999999876 5789999997654332211 1 113566
Q ss_pred cChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCC---------------
Q 016648 239 LLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP--------------- 303 (385)
Q Consensus 239 ~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~--------------- 303 (385)
++.+++..+|+.||++++||..|+||++++||||||+|||+|+.++..|++ .++.+|++++.
T Consensus 198 v~~~~l~~~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i---~~~~ng~lv~~~~~~~~~~~~~~~~G 274 (331)
T PHA01630 198 LPDDDIYSLFAGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWV---LSNLDVYWIKSGRKPKLWYTNPIHVG 274 (331)
T ss_pred CCHHHHHHHHHhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhc---cCCCceEEeeecccccccccCCcccc
Confidence 999999999999999999999999999999999999999999999999999 77777666542
Q ss_pred ----CCHHHHHHHHhHhhcCH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 016648 304 ----GDLDDCLSKLEPLLYNQ---ELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 353 (385)
Q Consensus 304 ----~~~~~l~~~i~~ll~~~---~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~ 353 (385)
.|.+++++++.+++.|+ +.++.+..+++...++|||+++++++. ++|++
T Consensus 275 ~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~fs~~~ia~k~~-~l~~~ 330 (331)
T PHA01630 275 YFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAILYRENYSYNAIAKMWE-KILEK 330 (331)
T ss_pred cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHhc
Confidence 27788889998988863 444555555555568899999999997 68764
No 55
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=100.00 E-value=4.2e-33 Score=252.78 Aligned_cols=270 Identities=23% Similarity=0.283 Sum_probs=208.6
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCE-EEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPI-VMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~-v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
+...+.+.+++.+||+||+|.+....+.. .+.+..+.|. +++.|+......... ... ......+.+.+.+|.++
T Consensus 68 ~~~~~~~~~~~~~~Dvv~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~i 142 (358)
T cd03812 68 YFKKLYKLIKKNKYDIVHVHGSSASGFIL-LAAKKAGVKVRIAHSHNTSDSHDKKK--KIL--KYKVLRKLINRLATDYL 142 (358)
T ss_pred HHHHHHHHHhcCCCCEEEEeCcchhHHHH-HHHhhCCCCeEEEEeccccccccccc--hhh--HHHHHHHHHHhcCCEEE
Confidence 45677778889999999999875433333 3444466665 556676432221111 100 01345677888999999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC--
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-- 207 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~-- 207 (385)
++|+...+.+... ....++.++|||+|.+.+.+.......+.+ ....+++++|+|+|++.+.||++.+++++..+
T Consensus 143 ~~s~~~~~~~~~~--~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~-~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~ 219 (358)
T cd03812 143 ACSEEAGKWLFGK--VKNKKFKVIPNGIDLEKFIFNEEIRKKRRE-LGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLK 219 (358)
T ss_pred EcCHHHHHHHHhC--CCcccEEEEeccCcHHHcCCCchhhhHHHH-cCCCCCCEEEEEEeccccccChHHHHHHHHHHHH
Confidence 9999999998776 356799999999998877654332222222 22345778999999999999999999999876
Q ss_pred --CCceEEEEeCCccHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 208 --PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 208 --~~~~l~i~G~g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
++++++++|+|+..+.+++.+.+ .++.+.|+ .+++.++|+.||++|+||..|++|++++|||++|+|||+|+
T Consensus 220 ~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~ 297 (358)
T cd03812 220 KNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGV--RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCILSD 297 (358)
T ss_pred hCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecc--cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEEEc
Confidence 58999999999988777776643 36999999 48899999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH
Q 016648 282 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 334 (385)
Q Consensus 282 ~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~ 334 (385)
.++..+.+ .+ ..+++..++++++++++|.++++|++.++.+...+....
T Consensus 298 ~~~~~~~i---~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 298 TITKEVDL---TD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred CCchhhhh---cc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 99999999 66 456666677889999999999999998888777666544
No 56
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=100.00 E-value=5e-33 Score=251.36 Aligned_cols=266 Identities=24% Similarity=0.336 Sum_probs=209.7
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCC-------cccccccc------cccchhHHHHH
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVP-------VYIPRYTF------SWLVKPMWLVI 118 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~-------~~~~~~~~------~~~~~~~~~~~ 118 (385)
...+.+.+...++|+|++++...... +....+.|.+.++|.... ........ ......++..+
T Consensus 72 ~~~~~~~~~~~~~D~v~~~~~~~~~~----~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (351)
T cd03804 72 MPLAIEQFDLSGYDLVISSSHAVAKG----VITRPDQLHICYCHTPMRYAWDLYHDYLKESGLGKRLALRLLLHYLRIWD 147 (351)
T ss_pred hhHHHHhccccCCCEEEEcCcHHhcc----ccCCCCCcEEEEeCCchHHHhcCchHhhhhcccchhhHHHHHHHHHHHHH
Confidence 44455666778999999987522211 114567888888886311 11111000 11223344566
Q ss_pred HHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHH
Q 016648 119 KFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLD 198 (385)
Q Consensus 119 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~ 198 (385)
+..++++|.++++|+.+++.+.+.++ .+..+++||+|.+.+.+.. .....++++|++.+.||++
T Consensus 148 ~~~~~~~d~ii~~S~~~~~~~~~~~~---~~~~vi~~~~d~~~~~~~~-------------~~~~~il~~G~~~~~K~~~ 211 (351)
T cd03804 148 RRSAARVDYFIANSRFVARRIKKYYG---RDATVIYPPVDTDRFTPAE-------------EKEDYYLSVGRLVPYKRID 211 (351)
T ss_pred HHHhcCCCEEEECCHHHHHHHHHHhC---CCcEEECCCCCHhhcCcCC-------------CCCCEEEEEEcCccccChH
Confidence 77789999999999999999987764 3567899999987765431 2345799999999999999
Q ss_pred HHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 199 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 199 ~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
.++++++.++ .+++|+|+|+..+.+++ ....+|++.|+++++++.++|+.||++++|+. |++|++++|||+||+|||
T Consensus 212 ~li~a~~~~~-~~l~ivG~g~~~~~l~~-~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~-e~~g~~~~Eama~G~Pvi 288 (351)
T cd03804 212 LAIEAFNKLG-KRLVVIGDGPELDRLRA-KAGPNVTFLGRVSDEELRDLYARARAFLFPAE-EDFGIVPVEAMASGTPVI 288 (351)
T ss_pred HHHHHHHHCC-CcEEEEECChhHHHHHh-hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc-CCCCchHHHHHHcCCCEE
Confidence 9999999998 99999999988777777 34568999999999999999999999999999 999999999999999999
Q ss_pred EecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 016648 279 GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 346 (385)
Q Consensus 279 ~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~ 346 (385)
+++.++..+++ .++.+|++++++|+++++++|..+++|++ .+.+++++.+++|+|++..+++
T Consensus 289 ~~~~~~~~e~i---~~~~~G~~~~~~~~~~la~~i~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 350 (351)
T cd03804 289 AYGKGGALETV---IDGVTGILFEEQTVESLAAAVERFEKNED---FDPQAIRAHAERFSESRFREKI 350 (351)
T ss_pred EeCCCCCccee---eCCCCEEEeCCCCHHHHHHHHHHHHhCcc---cCHHHHHHHHHhcCHHHHHHHh
Confidence 99999999999 88899999999999999999999999874 2344455556789999988765
No 57
>PLN02949 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.4e-32 Score=250.74 Aligned_cols=228 Identities=16% Similarity=0.238 Sum_probs=186.8
Q ss_pred HHHHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeecccccc
Q 016648 117 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 196 (385)
Q Consensus 117 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~ 196 (385)
+++...+.+|.++++|+++++.+.+.++. .+++.++++|++...+...... ..+++..++++|++.++||
T Consensus 213 l~~~~~~~ad~ii~nS~~t~~~l~~~~~~-~~~i~vvyp~vd~~~~~~~~~~---------~~~~~~~il~vGR~~~~Kg 282 (463)
T PLN02949 213 MYGLVGRCAHLAMVNSSWTKSHIEALWRI-PERIKRVYPPCDTSGLQALPLE---------RSEDPPYIISVAQFRPEKA 282 (463)
T ss_pred HHHHHcCCCCEEEECCHHHHHHHHHHcCC-CCCeEEEcCCCCHHHcccCCcc---------ccCCCCEEEEEEeeeccCC
Confidence 34555688999999999999999887653 3578899999987654221110 1234578999999999999
Q ss_pred HHHHHHHHHhC--------CCceEEEEeCCcc------HHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcC
Q 016648 197 LDFLKRVMDRL--------PEARIAFIGDGPY------REELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPS 258 (385)
Q Consensus 197 ~~~l~~a~~~~--------~~~~l~i~G~g~~------~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps 258 (385)
++.+++|+.++ ++++++|+|++.. .+++++++.+ .+|.|.|+++.+++..+|+.||++++|+
T Consensus 283 ~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s 362 (463)
T PLN02949 283 HALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSM 362 (463)
T ss_pred HHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCC
Confidence 99999998752 5789999997632 2456666553 3699999999999999999999999999
Q ss_pred CCCCCcHHHHHHHhcCCcEEEecCCCCC-cccccCCCCCeeEeeCCCCHHHHHHHHhHhhc-CHHHHHHHHHHHHHHHHh
Q 016648 259 ESETLGLVVLEAMSSGIPVVGVRAGGIP-DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEK 336 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s~~~~~~-e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~a~~~~~~ 336 (385)
..|+||++++|||++|+|||+++.+|.. +++.+..++.+|++++ |+++++++|.++++ +++.+++|++++++.+++
T Consensus 363 ~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~~~g~tG~l~~--~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~ 440 (463)
T PLN02949 363 IDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDEDGQQTGFLAT--TVEEYADAILEVLRMRETERLEIAAAARKRANR 440 (463)
T ss_pred ccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecCCCCcccccCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998864 6662222367898875 99999999999998 578889999999999988
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 016648 337 YDWRAATRTIRNEQYNAAIWF 357 (385)
Q Consensus 337 ~s~~~~~~~~~~~iy~~~~~~ 357 (385)
|||+.+.+++. +.+++++++
T Consensus 441 FS~e~~~~~~~-~~i~~l~~~ 460 (463)
T PLN02949 441 FSEQRFNEDFK-DAIRPILNS 460 (463)
T ss_pred cCHHHHHHHHH-HHHHHHHhh
Confidence 99999999997 688888765
No 58
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=100.00 E-value=2.6e-32 Score=245.84 Aligned_cols=270 Identities=25% Similarity=0.401 Sum_probs=217.1
Q ss_pred cccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhC-CCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCC
Q 016648 48 SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC-VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 126 (385)
Q Consensus 48 ~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~-~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 126 (385)
.+.....+.+.+++.+||+|+++.+.... +......+ +|++.+.|+......... ......+..++.+|
T Consensus 68 ~~~~~~~~~~~l~~~~~d~i~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d 137 (348)
T cd03820 68 RFKKLRRLRKLLKNNKPDVVISFLTSLLT---FLASLGLKIVKLIVSEHNSPDAYKKRL-------RRLLLRRLLYRRAD 137 (348)
T ss_pred cccchHHHHHhhcccCCCEEEEcCchHHH---HHHHHhhccccEEEecCCCccchhhhh-------HHHHHHHHHHhcCC
Confidence 44556788899999999999999875222 22233344 499999998654322111 11114788899999
Q ss_pred eEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHh
Q 016648 127 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 206 (385)
Q Consensus 127 ~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 206 (385)
.+++.|+....... ..+..++.++||+++...+... ...++..++++|++.+.||++.++++++.
T Consensus 138 ~ii~~s~~~~~~~~---~~~~~~~~vi~~~~~~~~~~~~------------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~ 202 (348)
T cd03820 138 AVVVLTEEDRALYY---KKFNKNVVVIPNPLPFPPEEPS------------SDLKSKRILAVGRLVPQKGFDLLIEAWAK 202 (348)
T ss_pred EEEEeCHHHHHHhh---ccCCCCeEEecCCcChhhcccc------------CCCCCcEEEEEEeeccccCHHHHHHHHHH
Confidence 99999999972222 2356789999999998765432 13467889999999999999999999987
Q ss_pred C----CCceEEEEeCCccHHHHHHHHcCC----CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 207 L----PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 207 ~----~~~~l~i~G~g~~~~~l~~~~~~~----~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
+ ++++++++|.++....+.+...+. ++.+.|+ .+++..+|+.||++++||..|++|++++|||++|+|||
T Consensus 203 l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~--~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi 280 (348)
T cd03820 203 IAKKHPDWKLRIVGDGPEREALEALIKELGLEDRVILLGF--TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVI 280 (348)
T ss_pred HHhcCCCeEEEEEeCCCCHHHHHHHHHHcCCCCeEEEcCC--cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEE
Confidence 6 689999999998887777655433 5889998 48999999999999999999999999999999999999
Q ss_pred EecCCC-CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 279 GVRAGG-IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 279 ~s~~~~-~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
+++.++ ..+++ .++.+|+++++.|+++++++|.++++|++.++++++++++..++|+|+++++++.
T Consensus 281 ~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (348)
T cd03820 281 SFDCPTGPSEII---EDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESAERFSIENIIKQWE 347 (348)
T ss_pred EecCCCchHhhh---ccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCHHHHHHHhc
Confidence 999764 45666 5667999999999999999999999999999999999988788999999998874
No 59
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=100.00 E-value=6.2e-33 Score=254.37 Aligned_cols=266 Identities=20% Similarity=0.239 Sum_probs=200.2
Q ss_pred hccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCc----ccccc-------------cccc---cch-----hH
Q 016648 60 ARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPV----YIPRY-------------TFSW---LVK-----PM 114 (385)
Q Consensus 60 ~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~----~~~~~-------------~~~~---~~~-----~~ 114 (385)
.+.+||||+.+......+.. .....++|+++.+| +|. ..... ..+. ..+ .+
T Consensus 104 ~~~~pDv~i~~~g~~~~~~~--~~~~~~~~~i~y~h--~P~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~k~~y~~~~ 179 (419)
T cd03806 104 LKLVPDIFIDTMGYPFTYPL--VRLLGGCPVGAYVH--YPTISTDMLQKVRSREASYNNSATIARSPVLSKAKLLYYRLF 179 (419)
T ss_pred HhcCCCEEEEcCCcccHHHH--HHHhcCCeEEEEec--CCcchHHHHHHHhhccccccCccchhccchHHHHHHHHHHHH
Confidence 34589999988743333322 22345889999999 452 11000 0000 111 12
Q ss_pred HHHHHHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeecccc
Q 016648 115 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE 194 (385)
Q Consensus 115 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~ 194 (385)
..++++..+.+|.++++|+++.+.+.+.+.. .+++.+++||+|.+.+.+... ...++..+++|+|++.+.
T Consensus 180 ~~~~~~~~~~aD~ii~~S~~~~~~~~~~~~~-~~~~~vi~~gvd~~~~~~~~~---------~~~~~~~~il~vgr~~~~ 249 (419)
T cd03806 180 AFLYGLAGSFADVVMVNSTWTRNHIRSLWKR-NTKPSIVYPPCDVEELLKLPL---------DEKTRENQILSIAQFRPE 249 (419)
T ss_pred HHHHHHHhhcCCEEEECCHHHHHHHHHHhCc-CCCcEEEcCCCCHHHhccccc---------ccccCCcEEEEEEeecCC
Confidence 2467788899999999999999999887753 358999999999876644321 013356789999999999
Q ss_pred ccHHHHHHHHHhC----C-----CceEEEEeCCc------cHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEE
Q 016648 195 KSLDFLKRVMDRL----P-----EARIAFIGDGP------YREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFV 255 (385)
Q Consensus 195 k~~~~l~~a~~~~----~-----~~~l~i~G~g~------~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v 255 (385)
||++.+++|+..+ + +++++|+|++. ..+.+++++.+ .+|+|+|.++.+++..+|+.||+++
T Consensus 250 K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v 329 (419)
T cd03806 250 KNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGL 329 (419)
T ss_pred CCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEE
Confidence 9999999999876 2 48999999763 33455555543 3699999999999999999999999
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEecCCC-CCcccccCC---CCCeeEeeCCCCHHHHHHHHhHhhcCHH-HHHHHHHHH
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVRAGG-IPDIIPEDQ---DGKIGYLFNPGDLDDCLSKLEPLLYNQE-LRETMGQAA 330 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~-~~e~~~~~~---~~~~g~~~~~~~~~~l~~~i~~ll~~~~-~~~~~~~~a 330 (385)
+|+..|+||.+++|||+||+|||+++.++ ..+++ . ++.+|++++ |+++++++|.+++++++ .++.+++++
T Consensus 330 ~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~~iv---~~~~~g~~G~l~~--d~~~la~ai~~ll~~~~~~~~~~~~~~ 404 (419)
T cd03806 330 HTMWNEHFGIGVVEYMAAGLIPLAHASGGPLLDIV---VPWDGGPTGFLAS--TAEEYAEAIEKILSLSEEERLRIRRAA 404 (419)
T ss_pred ECCccCCcccHHHHHHHcCCcEEEEcCCCCchhee---eccCCCCceEEeC--CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999866 45777 5 789999975 99999999999999655 445555555
Q ss_pred HHHHHhCCHHHHHH
Q 016648 331 RQEMEKYDWRAATR 344 (385)
Q Consensus 331 ~~~~~~~s~~~~~~ 344 (385)
++..++||++...+
T Consensus 405 ~~~~~~fs~~~f~~ 418 (419)
T cd03806 405 RSSVKRFSDEEFER 418 (419)
T ss_pred HHHHHhhCHHHhcc
Confidence 55457899998753
No 60
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=100.00 E-value=3.3e-32 Score=244.60 Aligned_cols=255 Identities=20% Similarity=0.302 Sum_probs=206.6
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
.....+.+.+++.+||+||+|+.....+ .++..++|+|++.|+........ ........+.++
T Consensus 74 ~~~~~~~~~~~~~~~Divh~~~~~~~~~----~~~~~~~~~v~~~h~~~~~~~~~-------------~~~~~~~~~~~~ 136 (335)
T cd03802 74 EALALAERALAAGDFDIVHNHSLHLPLP----FARPLPVPVVTTLHGPPDPELLK-------------LYYAARPDVPFV 136 (335)
T ss_pred HHHHHHHHHHhcCCCCEEEecCcccchh----hhcccCCCEEEEecCCCCcccch-------------HHHhhCcCCeEE
Confidence 3455677888999999999998744433 45678899999999865332111 233457788999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCCC
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPE 209 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~ 209 (385)
++|+...+.+... .++.++|||+|.+.+.+. ..++..++++|++.+.||++.+++++++. +
T Consensus 137 ~~s~~~~~~~~~~-----~~~~vi~ngvd~~~~~~~-------------~~~~~~i~~~Gr~~~~Kg~~~li~~~~~~-~ 197 (335)
T cd03802 137 SISDAQRRPWPPL-----PWVATVHNGIDLDDYPFR-------------GPKGDYLLFLGRISPEKGPHLAIRAARRA-G 197 (335)
T ss_pred EecHHHHhhcccc-----cccEEecCCcChhhCCCC-------------CCCCCEEEEEEeeccccCHHHHHHHHHhc-C
Confidence 9999988876543 689999999999877652 23566899999999999999999998874 7
Q ss_pred ceEEEEeCCccHHHHHHHHc-----CCCeEEecccChHHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEecCC
Q 016648 210 ARIAFIGDGPYREELEKMFT-----GMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 210 ~~l~i~G~g~~~~~l~~~~~-----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
++++++|.++..+.+..... ..++.+.|+++++++..+|+.+|++++||. .|++|.+++|||+||+|||+++.+
T Consensus 198 ~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~ 277 (335)
T cd03802 198 IPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRRG 277 (335)
T ss_pred CeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCC
Confidence 99999998876554443322 357999999999999999999999999998 599999999999999999999999
Q ss_pred CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHH
Q 016648 284 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYN 352 (385)
Q Consensus 284 ~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~ 352 (385)
+..|++ .++.+|+++++ +++++++|.++.+.+ .+++++.+ ++|||+.+++++. .+|+
T Consensus 278 ~~~e~i---~~~~~g~l~~~--~~~l~~~l~~l~~~~------~~~~~~~~~~~~s~~~~~~~~~-~~y~ 335 (335)
T cd03802 278 AVPEVV---EDGVTGFLVDS--VEELAAAVARADRLD------RAACRRRAERRFSAARMVDDYL-ALYR 335 (335)
T ss_pred Cchhhe---eCCCcEEEeCC--HHHHHHHHHHHhccH------HHHHHHHHHHhCCHHHHHHHHH-HHhC
Confidence 999999 88889999984 999999999986543 23455665 6799999999997 5774
No 61
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=100.00 E-value=1.9e-32 Score=249.72 Aligned_cols=267 Identities=23% Similarity=0.304 Sum_probs=210.8
Q ss_pred ccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHH
Q 016648 61 RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 140 (385)
Q Consensus 61 ~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 140 (385)
..++|+++++.+..... .+.......+.++++|+................... .....+.++|.+++.|+..++.+.
T Consensus 97 ~~~~diii~~~~~~~~~--~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~ii~~s~~~~~~l~ 173 (372)
T cd04949 97 DTKPDVFILDRPTLDGQ--ALLNMKKAAKVVVVLHSNHVSDNNDPVHSLINNFYE-YVFENLDKVDGVIVATEQQKQDLQ 173 (372)
T ss_pred CCCCCEEEECCccccch--hHHhccCCceEEEEEChHHhCCcccccccccchhhH-HHHhChhhCCEEEEccHHHHHHHH
Confidence 47899999998754433 223334456678888975432222111111111111 222235789999999999999998
Q ss_pred HhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC----CCceEEEEe
Q 016648 141 AARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIG 216 (385)
Q Consensus 141 ~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~----~~~~l~i~G 216 (385)
+.++. ..++.++|||++...+.+... ....+..++++|++.+.||++.+++++..+ ++++++|+|
T Consensus 174 ~~~~~-~~~v~~ip~g~~~~~~~~~~~----------~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G 242 (372)
T cd04949 174 KQFGN-YNPIYTIPVGSIDPLKLPAQF----------KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYG 242 (372)
T ss_pred HHhCC-CCceEEEcccccChhhcccch----------hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 88763 345899999999876654310 123567899999999999999999999876 789999999
Q ss_pred CCccHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC-CCCccccc
Q 016648 217 DGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG-GIPDIIPE 291 (385)
Q Consensus 217 ~g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~-~~~e~~~~ 291 (385)
.|+....+...... .+|.+.|+. +++.++|+.||++|+||..||+|++++|||++|+|||+++.+ +..+++
T Consensus 243 ~g~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~g~~~~v-- 318 (372)
T cd04949 243 YGDEEEKLKELIEELGLEDYVFLKGYT--RDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNYGPSEII-- 318 (372)
T ss_pred eCchHHHHHHHHHHcCCcceEEEcCCC--CCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCCCcHHHc--
Confidence 98877766665543 358999965 789999999999999999999999999999999999999987 788999
Q ss_pred CCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 016648 292 DQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 346 (385)
Q Consensus 292 ~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~ 346 (385)
.++.+|++++++|+++++++|..+++|++.++++++++++.+++|||+++++++
T Consensus 319 -~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~w 372 (372)
T cd04949 319 -EDGENGYLVPKGDIEALAEAIIELLNDPKLLQKFSEAAYENAERYSEENVWEKW 372 (372)
T ss_pred -ccCCCceEeCCCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHHHHHhcC
Confidence 889999999999999999999999999999999999999998899999998764
No 62
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=100.00 E-value=2.9e-32 Score=245.92 Aligned_cols=274 Identities=30% Similarity=0.403 Sum_probs=220.9
Q ss_pred cccchHHHHHHhhccCCCEEEeCCC-chhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCC
Q 016648 48 SLALSPRIISEVARFKPDIIHASSP-GIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 126 (385)
Q Consensus 48 ~~~~~~~l~~~i~~~~pDiI~~~~~-~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 126 (385)
.......+.+.+++.+||+||++.. ... +...+..+ .++|+++++|+............. ...+..++.+|
T Consensus 66 ~~~~~~~~~~~~~~~~~dii~~~~~~~~~-~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~------~~~~~~~~~~d 137 (353)
T cd03811 66 DLLAILRLRRLLRKEKPDVVISHLTTTPN-VLALLAAR-LGTKLIVWEHNSLSLELKRKLRLL------LLIRKLYRRAD 137 (353)
T ss_pred chhHHHHHHHHHHhcCCCEEEEcCccchh-HHHHHHhh-cCCceEEEEcCcchhhhccchhHH------HHHHhhccccc
Confidence 3445678889999999999999987 222 22222223 389999999997755433221111 36778889999
Q ss_pred eEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHh
Q 016648 127 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 206 (385)
Q Consensus 127 ~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 206 (385)
.++++|+.+++.+.+.++.+..++.++|||++...+.+...... + ....+++++++++|++...||++.++++++.
T Consensus 138 ~ii~~s~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~---~-~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~ 213 (353)
T cd03811 138 KIVAVSEGVKEDLLKLLGIPPDKIEVIYNPIDIEEIRALAEEPL---E-LGIPPDGPVILAVGRLSPQKGFDTLIRAFAL 213 (353)
T ss_pred eEEEeccchhhhHHHhhcCCccccEEecCCcChhhcCcccchhh---h-cCCCCCceEEEEEecchhhcChHHHHHHHHH
Confidence 99999999999999998765789999999999887765433211 1 1124567899999999999999999999998
Q ss_pred CC----CceEEEEeCCccHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 207 LP----EARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 207 ~~----~~~l~i~G~g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
+. +++++++|.++..+.+++.... .++.+.|++ +++.++++.||++++||..|++|++++|||++|+|||
T Consensus 214 l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI 291 (353)
T cd03811 214 LRKEGPDARLVILGDGPLREELEALAKELGLADRVHFLGFQ--SNPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVV 291 (353)
T ss_pred hhhcCCCceEEEEcCCccHHHHHHHHHhcCCCccEEEeccc--CCHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEE
Confidence 74 7999999998887777666553 368999997 6789999999999999999999999999999999999
Q ss_pred EecCCCCCcccccCCCCCeeEeeCCCCHHHH---HHHHhHhhcCHHHHHHHHHHHHHHH-HhCC
Q 016648 279 GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC---LSKLEPLLYNQELRETMGQAARQEM-EKYD 338 (385)
Q Consensus 279 ~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l---~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s 338 (385)
+++.++..+++ .++.+|++++++|.+++ ++++..+.++++.++++++++++.+ ++|+
T Consensus 292 ~~~~~~~~e~i---~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (353)
T cd03811 292 ATDCPGPREIL---EDGENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERVAREYS 352 (353)
T ss_pred EcCCCChHHHh---cCCCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 99999999999 88999999999999999 7888888889999999998777665 5565
No 63
>PLN02275 transferase, transferring glycosyl groups
Probab=100.00 E-value=1.6e-31 Score=242.13 Aligned_cols=244 Identities=19% Similarity=0.232 Sum_probs=189.2
Q ss_pred hhccCCCEEEeCCCchh--HHHHHHHHHHhCCCEEEEEecCCCccc--ccccccccchhHHHHHHHHHHhCCeEEEcChh
Q 016648 59 VARFKPDIIHASSPGIM--VFGALIIAKLLCVPIVMSYHTHVPVYI--PRYTFSWLVKPMWLVIKFLHRAADLTLVPSVA 134 (385)
Q Consensus 59 i~~~~pDiI~~~~~~~~--~~~~~~~~~~~~~p~v~~~h~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~ 134 (385)
.++.+||+||+|++... .+.+.++++..+.|+|++.|+.+.... .........+....+++.+++.+|.++++|+.
T Consensus 96 ~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~ii~~S~~ 175 (371)
T PLN02275 96 VKIPRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGHLCVTKA 175 (371)
T ss_pred hhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEEEECCHH
Confidence 35689999999986432 234556677789999999998642111 11112233445667889999999999999999
Q ss_pred HHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC-------
Q 016648 135 IGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL------- 207 (385)
Q Consensus 135 ~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~------- 207 (385)
+++.+.+.++.+ +.+++|+. .+.+.+..... ....+...+++++|++.+.||++.+++|+..+
T Consensus 176 ~~~~l~~~~g~~---i~vi~n~~-~~~f~~~~~~~------~~~~~~~~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~ 245 (371)
T PLN02275 176 MQHELDQNWGIR---ATVLYDQP-PEFFRPASLEI------RLRPNRPALVVSSTSWTPDEDFGILLEAAVMYDRRVAAR 245 (371)
T ss_pred HHHHHHHhcCCC---eEEECCCC-HHHcCcCCchh------cccCCCcEEEEEeCceeccCCHHHHHHHHHHHHhhhhhc
Confidence 999998765432 88999985 34454432210 01123345788999999999999999998753
Q ss_pred --------------CCceEEEEeCCccHHHHHHHHcCC---CeEEec-ccChHHHHHHHHhCcEEEEcCC---CCCCcHH
Q 016648 208 --------------PEARIAFIGDGPYREELEKMFTGM---PAVFTG-MLLGEELSQAYASGDVFVMPSE---SETLGLV 266 (385)
Q Consensus 208 --------------~~~~l~i~G~g~~~~~l~~~~~~~---~i~~~g-~~~~~~~~~~~~~adi~v~ps~---~e~~~~~ 266 (385)
++++++|+|+|+..+++++++.+. ++.+.+ +++.++++.+|+.||++++|+. .|++|++
T Consensus 246 ~~~~~~~~~~~~~~~~i~l~ivG~G~~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~ 325 (371)
T PLN02275 246 LNESDSASGKQSLYPRLLFIITGKGPQKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMK 325 (371)
T ss_pred cccccccccccccCCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHH
Confidence 679999999999999898887754 477765 6999999999999999998632 4889999
Q ss_pred HHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 267 VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 267 ~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
++||||||+|||+++.++.+|++ +++.+|++++ |+++++++|.+++
T Consensus 326 llEAmA~G~PVVa~~~gg~~eiv---~~g~~G~lv~--~~~~la~~i~~l~ 371 (371)
T PLN02275 326 VVDMFGCGLPVCAVSYSCIGELV---KDGKNGLLFS--SSSELADQLLELL 371 (371)
T ss_pred HHHHHHCCCCEEEecCCChHHHc---cCCCCeEEEC--CHHHHHHHHHHhC
Confidence 99999999999999999999999 8999999997 7999999998764
No 64
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=100.00 E-value=2.1e-32 Score=228.10 Aligned_cols=285 Identities=24% Similarity=0.367 Sum_probs=221.8
Q ss_pred chHHHHHHhhccCCCEEEeCCC-chhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 51 LSPRIISEVARFKPDIIHASSP-GIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~-~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
.+.-++.++.+++..+||.|++ ..+..-+++.++..|.+.|+|-|..+....-. ........+..+...|.+|
T Consensus 77 ~~Pllr~i~lrE~I~ivhghs~fS~lahe~l~hartMGlktVfTdHSlfGfad~~------si~~n~ll~~sL~~id~~I 150 (426)
T KOG1111|consen 77 DFPLLRPILLRERIEIVHGHSPFSYLAHEALMHARTMGLKTVFTDHSLFGFADIG------SILTNKLLPLSLANIDRII 150 (426)
T ss_pred cCcccchhhhhhceEEEecCChHHHHHHHHHHHHHhcCceEEEeccccccccchh------hhhhcceeeeeecCCCcEE
Confidence 3556677888889999999987 34456678888999999999999865322111 0111224566788899999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC--
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-- 207 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~-- 207 (385)
|+|...++...-.+..+++++.+|||.++.+.|.|.... ....+-..++.++|+-.+||+|.+++++.+.
T Consensus 151 cVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~--------~~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~ 222 (426)
T KOG1111|consen 151 CVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD--------KPSADIITIVVASRLVYRKGIDLLLEIIPSVCD 222 (426)
T ss_pred EEeecCCCceEEEeccCHhHeeeccceeeccccccCccc--------cCCCCeeEEEEEeeeeeccchHHHHHHHHHHHh
Confidence 999998888766666788999999999999999885442 1122337899999999999999999888654
Q ss_pred --CCceEEEEeCCccHHHHHH----HHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 208 --PEARIAFIGDGPYREELEK----MFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 208 --~~~~l~i~G~g~~~~~l~~----~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
|+++++|+|+||....+++ ...+.++.++|.++++++.+.|.+-|++++||..|+|+++++||++||+|||++.
T Consensus 223 ~~p~vrfii~GDGPk~i~lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTr 302 (426)
T KOG1111|consen 223 KHPEVRFIIIGDGPKRIDLEEMLEKLFLQDRVVMLGTVPHDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTR 302 (426)
T ss_pred cCCCeeEEEecCCcccchHHHHHHHhhccCceEEecccchHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEee
Confidence 8999999999995444444 4445579999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHH
Q 016648 282 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK-YDWRAATRTIRNEQYNAAIWFW 358 (385)
Q Consensus 282 ~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~-~s~~~~~~~~~~~iy~~~~~~~ 358 (385)
.||.+|+++ ++ -......++++++++++++++.-. ..-....+..++ |+|+.++++-. .+|.++....
T Consensus 303 VGGIpeVLP---~d--~i~~~~~~~~dl~~~v~~ai~~~~---~~p~~~h~~v~~~y~w~dVa~rTe-kvy~r~~~t~ 371 (426)
T KOG1111|consen 303 VGGIPEVLP---ED--MITLGEPGPDDLVGAVEKAITKLR---TLPLEFHDRVKKMYSWKDVAERTE-KVYDRAATTS 371 (426)
T ss_pred cCCccccCC---cc--ceeccCCChHHHHHHHHHHHHHhc---cCchhHHHHHHHhccHHHHHHHHH-HHHHHHhhcc
Confidence 999999993 22 233444578899999888876321 112233445544 99999999996 7999998754
No 65
>PHA01633 putative glycosyl transferase group 1
Probab=99.97 E-value=5.7e-29 Score=216.65 Aligned_cols=238 Identities=16% Similarity=0.196 Sum_probs=178.1
Q ss_pred CCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCC
Q 016648 87 CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRF 166 (385)
Q Consensus 87 ~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~ 166 (385)
+.|++.++|+.... . .....+.+.+.+|++|+.+++.+.+.+. +.. + ++++|+|.+.|.+..
T Consensus 70 ~~~~~tt~~g~~~~--------------~-~y~~~m~~~~~vIavS~~t~~~L~~~G~-~~~-i-~I~~GVD~~~f~p~~ 131 (335)
T PHA01633 70 KKYFYTTCDGIPNI--------------E-IVNKYLLQDVKFIPNSKFSAENLQEVGL-QVD-L-PVFHGINFKIVENAE 131 (335)
T ss_pred CCceEEeeCCcCch--------------H-HHHHHHhcCCEEEeCCHHHHHHHHHhCC-CCc-e-eeeCCCChhhcCccc
Confidence 56788888886421 1 3333445577999999999999998754 322 3 478999999887654
Q ss_pred CC-hhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC----C----CceEEEEeCCccHHHHHHHHcCCCeEEe-
Q 016648 167 RS-SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----P----EARIAFIGDGPYREELEKMFTGMPAVFT- 236 (385)
Q Consensus 167 ~~-~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~----~----~~~l~i~G~g~~~~~l~~~~~~~~i~~~- 236 (385)
.. ...+.+.....++.++++++||+.+.||++.+++|++.+ + +++++++|.+ .++++....+|++.
T Consensus 132 ~~~~~~r~~~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~~----~~~~l~l~~~V~f~g 207 (335)
T PHA01633 132 KLVPQLKQKLDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISHK----QFTQLEVPANVHFVA 207 (335)
T ss_pred hhhHHHHHHhCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcHH----HHHHcCCCCcEEEEe
Confidence 22 233333333234678899999999999999999999876 3 2467777742 33333334579888
Q ss_pred --cccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCccccc---------------CCCCCeeE
Q 016648 237 --GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE---------------DQDGKIGY 299 (385)
Q Consensus 237 --g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~---------------~~~~~~g~ 299 (385)
|+++.+++.++|+.||++|+||..|+||++++|||+||+|||+++.++++|+... +.+...|+
T Consensus 208 ~~G~~~~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~~~~~~~g~g~ 287 (335)
T PHA01633 208 EFGHNSREYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEEYYDKEHGQKW 287 (335)
T ss_pred cCCCCCHHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHHhcCcccCcee
Confidence 5667899999999999999999999999999999999999999999998887521 01223577
Q ss_pred eeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 300 LFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 300 ~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
.++..|+++++++|..+++..+ .+..+.++++.+++|+|+++.++++
T Consensus 288 ~~~~~d~~~la~ai~~~~~~~~-~~~~~~~~~~~a~~f~~~~~~~~~~ 334 (335)
T PHA01633 288 KIHKFQIEDMANAIILAFELQD-REERSMKLKELAKKYDIRNLYTRFL 334 (335)
T ss_pred eecCCCHHHHHHHHHHHHhccC-hhhhhHHHHHHHHhcCHHHHHHHhh
Confidence 8888899999999999865432 2344677888889999999999885
No 66
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.97 E-value=9.1e-30 Score=235.16 Aligned_cols=277 Identities=19% Similarity=0.209 Sum_probs=202.9
Q ss_pred CCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHHHh
Q 016648 63 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 142 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 142 (385)
..|+|++|++..+.++.++..+..+.|+++.+|..+|.........+ ...+.+ .+..+|.|.+.+....+.+.+.
T Consensus 131 ~~d~iwihDyhl~llp~~lr~~~~~~~i~~f~HipfP~~e~~~~lp~----~~~ll~-~~l~~D~igF~t~~~~~~Fl~~ 205 (460)
T cd03788 131 PGDLVWVHDYHLLLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPW----REELLR-GLLGADLIGFQTERYARNFLSC 205 (460)
T ss_pred CCCEEEEeChhhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCC----hHHHHH-HHhcCCEEEECCHHHHHHHHHH
Confidence 45999999998777776665555678999999998765432111111 112333 3344999999887665554442
Q ss_pred c----c------------cCCCcEEEeeCCCCCCCCCCCCCChhhHh---hhcCCCCCCcEEEEEeeccccccHHHHHHH
Q 016648 143 R----V------------TAANKIRIWKKGVDSESFHPRFRSSEMRW---RLSNGEPDKPLIVHVGRLGVEKSLDFLKRV 203 (385)
Q Consensus 143 ~----~------------~~~~~i~vi~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a 203 (385)
. + ....++.++|||+|.+.|.+......... +.....+++++|+++||+++.||++.+++|
T Consensus 206 ~~~~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~~~~~~~~~~~~~~~~~~~~~il~vgRl~~~Kgi~~ll~A 285 (460)
T cd03788 206 CSRLLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRERLGGRKLIVGVDRLDYSKGIPERLLA 285 (460)
T ss_pred HHHHcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhcCchhHHHHHHHHHhcCCCEEEEEecCccccCCHHHHHHH
Confidence 1 0 12246899999999988865433222111 112234577899999999999999999999
Q ss_pred HHhC----CC----ceEEEEeCC-----ccH----HHHHHHHcC----------CCeE-EecccChHHHHHHHHhCcEEE
Q 016648 204 MDRL----PE----ARIAFIGDG-----PYR----EELEKMFTG----------MPAV-FTGMLLGEELSQAYASGDVFV 255 (385)
Q Consensus 204 ~~~~----~~----~~l~i~G~g-----~~~----~~l~~~~~~----------~~i~-~~g~~~~~~~~~~~~~adi~v 255 (385)
++.+ |+ ++++++|.+ +.. +++++++.+ ..++ +.|.++.+++..+|+.||+++
T Consensus 286 ~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~v~~~~g~v~~~el~~~y~~aDv~v 365 (460)
T cd03788 286 FERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVAL 365 (460)
T ss_pred HHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCceeEEEEeCCCCHHHHHHHHHhccEEE
Confidence 9765 43 568888643 222 233333211 1244 457889999999999999999
Q ss_pred EcCCCCCCcHHHHHHHhcCCc----EEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCH-HHHHHHHHHH
Q 016648 256 MPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ-ELRETMGQAA 330 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~P----vI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~-~~~~~~~~~a 330 (385)
+||..||+|++++|||+||+| ||+|+.+|..+. +.+|+++++.|+++++++|.++++++ ++++.+.+++
T Consensus 366 ~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~------~~~g~lv~p~d~~~la~ai~~~l~~~~~e~~~~~~~~ 439 (460)
T cd03788 366 VTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE------LSGALLVNPYDIDEVADAIHRALTMPLEERRERHRKL 439 (460)
T ss_pred eCccccccCcccceeEEEecCCCceEEEeccccchhh------cCCCEEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999 999988877654 35689999999999999999999854 6788888889
Q ss_pred HHHHHhCCHHHHHHHHHHHH
Q 016648 331 RQEMEKYDWRAATRTIRNEQ 350 (385)
Q Consensus 331 ~~~~~~~s~~~~~~~~~~~i 350 (385)
++.+++|+++.+++++++.+
T Consensus 440 ~~~v~~~~~~~w~~~~l~~l 459 (460)
T cd03788 440 REYVRTHDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHhCCHHHHHHHHHHhh
Confidence 99999999999999987643
No 67
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.97 E-value=4.1e-29 Score=228.73 Aligned_cols=287 Identities=19% Similarity=0.215 Sum_probs=211.0
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
++.++.+..+. -|+|++|+++.+.++.++..+....++.+.+|-.+|....-....+ +.-.-..+-.||.|.+
T Consensus 117 fA~~i~~~~~~--~d~vwvhDYhl~l~p~~lr~~~~~~~igfFlHipfP~~e~f~~lp~-----r~~il~gll~~dligF 189 (456)
T TIGR02400 117 FAEALAPLLQP--GDIVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPSSEIYRTLPW-----RRELLEGLLAYDLVGF 189 (456)
T ss_pred HHHHHHHhCCC--CCEEEEecchhhHHHHHHHhhCCCCeEEEEEeCCCCChHHHhhCCc-----HHHHHHHHhcCCEEEE
Confidence 33344444433 3899999998877777765555677899999987765432221111 1122334567999999
Q ss_pred cChhHHHHHHHhcc---------------cCCCcEEEeeCCCCCCCCCCCCCChhh---HhhhcCCCCCCcEEEEEeecc
Q 016648 131 PSVAIGKDLEAARV---------------TAANKIRIWKKGVDSESFHPRFRSSEM---RWRLSNGEPDKPLIVHVGRLG 192 (385)
Q Consensus 131 ~s~~~~~~~~~~~~---------------~~~~~i~vi~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~G~~~ 192 (385)
.+....+.+..... ....++.++|||+|++.|.+....... ........+++++|+++||++
T Consensus 190 ~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~vIl~VgRLd 269 (456)
T TIGR02400 190 QTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAKKPSVQKRIAELRESLKGRKLIIGVDRLD 269 (456)
T ss_pred CCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhcChhHHHHHHHHHHHcCCCeEEEEccccc
Confidence 99988888765321 134568899999999988654322211 111111124678999999999
Q ss_pred ccccHHHHHHHHHhC----CC----ceEEEEe-----CCccHHHHHHHHcCC--------------Ce-EEecccChHHH
Q 016648 193 VEKSLDFLKRVMDRL----PE----ARIAFIG-----DGPYREELEKMFTGM--------------PA-VFTGMLLGEEL 244 (385)
Q Consensus 193 ~~k~~~~l~~a~~~~----~~----~~l~i~G-----~g~~~~~l~~~~~~~--------------~i-~~~g~~~~~~~ 244 (385)
+.||++.+++|++++ |+ +.++++| +++....+++.+.+. .+ .+.|.++.+++
T Consensus 270 ~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el 349 (456)
T TIGR02400 270 YSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREEL 349 (456)
T ss_pred cccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHH
Confidence 999999999999875 43 4577664 334444333333211 23 34668889999
Q ss_pred HHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCc----EEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc-C
Q 016648 245 SQAYASGDVFVMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-N 319 (385)
Q Consensus 245 ~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P----vI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~-~ 319 (385)
..+|+.||++++||..||+|++++||||||+| +|+|+.+|..+.+ . +|+++++.|+++++++|.++++ +
T Consensus 350 ~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~~~l---~---~gllVnP~d~~~lA~aI~~aL~~~ 423 (456)
T TIGR02400 350 MALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAAQEL---N---GALLVNPYDIDGMADAIARALTMP 423 (456)
T ss_pred HHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCChHHh---C---CcEEECCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999 9999999988888 3 6899999999999999999998 5
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 016648 320 QELRETMGQAARQEMEKYDWRAATRTIRNEQ 350 (385)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~i 350 (385)
++++++..+++++.+.+||+..+++++++.+
T Consensus 424 ~~er~~r~~~~~~~v~~~~~~~W~~~~l~~l 454 (456)
T TIGR02400 424 LEEREERHRAMMDKLRKNDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHh
Confidence 6788888888999998899999999988644
No 68
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.97 E-value=6.2e-29 Score=225.47 Aligned_cols=263 Identities=17% Similarity=0.167 Sum_probs=192.2
Q ss_pred ccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHH
Q 016648 61 RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 140 (385)
Q Consensus 61 ~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 140 (385)
+.+..|++.+.|....+. ....+.++|++++|.++...... ......++.++++||.|++.|+.+.+.+.
T Consensus 100 ~~~~~i~~~~~P~~~~~~----~~~~~~~~Vyd~~D~~~~~~~~~------~~~~~~e~~~~~~ad~vi~~S~~l~~~~~ 169 (373)
T cd04950 100 GFGRPILWYYTPYTLPVA----ALLQASLVVYDCVDDLSAFPGGP------PELLEAERRLLKRADLVFTTSPSLYEAKR 169 (373)
T ss_pred CCCCcEEEEeCccHHHHH----hhcCCCeEEEEcccchhccCCCC------HHHHHHHHHHHHhCCEEEECCHHHHHHHh
Confidence 455667777766443322 23578899999999765543211 11225788999999999999999999887
Q ss_pred HhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCcc
Q 016648 141 AARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY 220 (385)
Q Consensus 141 ~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~ 220 (385)
+.+ .++.++|||+|.+.|.+.......... ....++++++|+|++...++++.+.++++..++++++++|.++.
T Consensus 170 ~~~----~~i~~i~ngvd~~~f~~~~~~~~~~~~--~~~~~~~~i~y~G~l~~~~d~~ll~~la~~~p~~~~vliG~~~~ 243 (373)
T cd04950 170 RLN----PNVVLVPNGVDYEHFAAARDPPPPPAD--LAALPRPVIGYYGAIAEWLDLELLEALAKARPDWSFVLIGPVDV 243 (373)
T ss_pred hCC----CCEEEcccccCHHHhhcccccCCChhH--HhcCCCCEEEEEeccccccCHHHHHHHHHHCCCCEEEEECCCcC
Confidence 754 589999999999888654322111011 12346789999999999899998888888889999999998733
Q ss_pred HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCC-----CCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCC
Q 016648 221 REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES-----ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG 295 (385)
Q Consensus 221 ~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~-----e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~ 295 (385)
......+....||+++|++++++++.+++.+|++++|+.. +++|++++||||||+|||+|+.+.+.+. .
T Consensus 244 ~~~~~~~~~~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~~~~------~ 317 (373)
T cd04950 244 SIDPSALLRLPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEVRRY------E 317 (373)
T ss_pred ccChhHhccCCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHHHhh------c
Confidence 3333333334689999999999999999999999999863 4679999999999999999986654433 3
Q ss_pred CeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 016648 296 KIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRN 348 (385)
Q Consensus 296 ~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~ 348 (385)
..+++ .++|+++++++|.+++.++...... ++++.++++||++.++++.+
T Consensus 318 ~~~~~-~~~d~~~~~~ai~~~l~~~~~~~~~--~~~~~~~~~sW~~~a~~~~~ 367 (373)
T cd04950 318 DEVVL-IADDPEEFVAAIEKALLEDGPARER--RRLRLAAQNSWDARAAEMLE 367 (373)
T ss_pred CcEEE-eCCCHHHHHHHHHHHHhcCCchHHH--HHHHHHHHCCHHHHHHHHHH
Confidence 33433 4569999999999976543221111 22235678999999999974
No 69
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.96 E-value=1.3e-27 Score=216.88 Aligned_cols=290 Identities=16% Similarity=0.174 Sum_probs=193.4
Q ss_pred ccCCCEEEeCCCchhHHHHHHHH-HHhCCCEEEEEecCCCccc--ccc--cccc-------------cchhHHHHHHHHH
Q 016648 61 RFKPDIIHASSPGIMVFGALIIA-KLLCVPIVMSYHTHVPVYI--PRY--TFSW-------------LVKPMWLVIKFLH 122 (385)
Q Consensus 61 ~~~pDiI~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~--~~~--~~~~-------------~~~~~~~~~~~~~ 122 (385)
..++||+|+|.+. .+.++..++ +..++|.|+|.|....... ... .... .......+|+.+.
T Consensus 146 ~~~~dViH~HeWm-~g~a~~~lK~~~~~VptVfTtHAT~~GR~l~~g~~~~y~~l~~~~~d~eA~~~~I~~r~~iE~~aa 224 (590)
T cd03793 146 DEPAVVAHFHEWQ-AGVGLPLLRKRKVDVSTIFTTHATLLGRYLCAGNVDFYNNLDYFDVDKEAGKRGIYHRYCIERAAA 224 (590)
T ss_pred CCCCeEEEEcchh-HhHHHHHHHHhCCCCCEEEEecccccccccccCCcccchhhhhcchhhhhhcccchHHHHHHHHHH
Confidence 3589999999983 344444444 4468889999998553331 110 0000 0012233788999
Q ss_pred HhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhh----------------HhhhcCCCCCCcEEE
Q 016648 123 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEM----------------RWRLSNGEPDKPLIV 186 (385)
Q Consensus 123 ~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~i~ 186 (385)
..||.++++|+.+++++...++.++++ |+|||+|...|.+..+.+.. +.+.. ..+++++++
T Consensus 225 ~~Ad~fttVS~it~~E~~~Ll~~~pd~--ViPNGid~~~f~~~~e~~~~~~~~k~ki~~f~~~~~~~~~~-~~~d~tli~ 301 (590)
T cd03793 225 HCAHVFTTVSEITAYEAEHLLKRKPDV--VLPNGLNVKKFSALHEFQNLHAQSKEKINEFVRGHFYGHYD-FDLDKTLYF 301 (590)
T ss_pred hhCCEEEECChHHHHHHHHHhCCCCCE--EeCCCcchhhcccchhhhhhhHHhhhhhhHHHHHHHhhhcC-CCCCCeEEE
Confidence 999999999999999999998877666 99999999998765432111 11111 123556666
Q ss_pred E-Eeeccc-cccHHHHHHHHHhCC--------Cce---EEEEeCC-----------cc-----HH---HHHHH-------
Q 016648 187 H-VGRLGV-EKSLDFLKRVMDRLP--------EAR---IAFIGDG-----------PY-----RE---ELEKM------- 227 (385)
Q Consensus 187 ~-~G~~~~-~k~~~~l~~a~~~~~--------~~~---l~i~G~g-----------~~-----~~---~l~~~------- 227 (385)
| +||+.. .||++.+++|+.++. +.. |+++-.+ .. .+ .+++.
T Consensus 302 f~~GR~e~~nKGiDvlIeAl~rLn~~l~~~~~~~tVvafii~p~~~~~~~~~~l~g~~~~~~l~~~~~~i~~~i~~~~~~ 381 (590)
T cd03793 302 FTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNVESLKGQAVRKQLRDTVNSVKEKIGKRLFE 381 (590)
T ss_pred EEeeccccccCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCccCCcCHHhhcchHHHHHHHHHHHHHHHHhhhhhhh
Confidence 6 799988 999999999998761 222 2222111 00 00 00000
Q ss_pred -----------------------------------------------------Hc------C--C--CeEEec-ccC---
Q 016648 228 -----------------------------------------------------FT------G--M--PAVFTG-MLL--- 240 (385)
Q Consensus 228 -----------------------------------------------------~~------~--~--~i~~~g-~~~--- 240 (385)
++ . . +|+|++ +++
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~~kr~~~~~~~~~~~p~~tH~~~~~~~D~il~~~r~~~l~N~~~drVkvif~P~~L~~~~ 461 (590)
T cd03793 382 AALKGKLPDLEELLDKEDKVMLKRRIFALQRHSLPPVVTHNMVDDANDPILNHIRRIQLFNSPEDRVKVVFHPEFLSSTN 461 (590)
T ss_pred HhhccCCCChhhhcchhhHHHHHHHHHhhccCCCCCeeeecCCcCccCHHHHHHHHhcCcCCCCCeEEEEEcccccCCCC
Confidence 00 0 0 144433 222
Q ss_pred ---hHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccC-CCC-CeeEeeC-------CCCHHH
Q 016648 241 ---GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED-QDG-KIGYLFN-------PGDLDD 308 (385)
Q Consensus 241 ---~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~-~~~-~~g~~~~-------~~~~~~ 308 (385)
..+..++|+.||++|+||.+|+||.+++|||+||+|+|+|+.++..+.+.+. .++ ..|+.+. +.++++
T Consensus 462 ~~~g~~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~ 541 (590)
T cd03793 462 PLLGLDYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFMEEHIEDPESYGIYIVDRRFKSPDESVQQ 541 (590)
T ss_pred CcCCcchHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhHHHhccCCCceEEEecCCccchHHHHHH
Confidence 2347788999999999999999999999999999999999999885444211 233 3566665 456888
Q ss_pred HHHHHhHhhcCHHHHHHHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHH
Q 016648 309 CLSKLEPLLYNQELRETMGQAAR--QEMEKYDWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 309 l~~~i~~ll~~~~~~~~~~~~a~--~~~~~~s~~~~~~~~~~~iy~~~~~ 356 (385)
++++|.++++. +.++.+.++++ +..++|+|++.++.|. +.|+.++.
T Consensus 542 La~~m~~~~~~-~~r~~~~~r~~~~r~s~~f~W~~~~~~Y~-~A~~~Al~ 589 (590)
T cd03793 542 LTQYMYEFCQL-SRRQRIIQRNRTERLSDLLDWRNLGRYYR-KARQLALS 589 (590)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhh
Confidence 99999998854 45566665555 6668899999999997 68887763
No 70
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.96 E-value=1.5e-27 Score=217.02 Aligned_cols=267 Identities=14% Similarity=0.196 Sum_probs=197.7
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHH-----hCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCC
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKL-----LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 126 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~-----~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 126 (385)
.+++.+++++.+||+||++++.....++..+.+. .++|++..++|.... ...++.+.+|
T Consensus 89 ~~~l~~~i~~~~pDvIi~thp~~~~~~~~~l~~~~~~~~~~~p~~~~~tD~~~~----------------~~~w~~~~~d 152 (382)
T PLN02605 89 AREVAKGLMKYKPDIIVSVHPLMQHVPLRVLRWQGKELGKKIPFTTVVTDLGTC----------------HPTWFHKGVT 152 (382)
T ss_pred HHHHHHHHHhcCcCEEEEeCcCcccCHHHHHHHHhhccCCCCCEEEEECCCCCc----------------CcccccCCCC
Confidence 4678899999999999998764332222222222 478988887775311 1123467899
Q ss_pred eEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHh
Q 016648 127 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 206 (385)
Q Consensus 127 ~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 206 (385)
.++++|+.+++.+.+.+ .+++++.+++++++.+...+.......+.++.. +++.++++++|+....|++..+++++..
T Consensus 153 ~~~~~s~~~~~~l~~~g-~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl-~~~~~~il~~Gg~~g~~~~~~li~~l~~ 230 (382)
T PLN02605 153 RCFCPSEEVAKRALKRG-LEPSQIRVYGLPIRPSFARAVRPKDELRRELGM-DEDLPAVLLMGGGEGMGPLEETARALGD 230 (382)
T ss_pred EEEECCHHHHHHHHHcC-CCHHHEEEECcccCHhhccCCCCHHHHHHHcCC-CCCCcEEEEECCCcccccHHHHHHHHHH
Confidence 99999999999998875 577899999999987655433333344444433 4567899999998888999999888864
Q ss_pred C--------CCce-EEEEeCCc-cHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCc
Q 016648 207 L--------PEAR-IAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 276 (385)
Q Consensus 207 ~--------~~~~-l~i~G~g~-~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 276 (385)
. ++.+ ++++|.+. ..+.+++.....++++.|++ +++.++|+.||++|.++ .|++++|||+||+|
T Consensus 231 ~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~--~~~~~l~~aaDv~V~~~----g~~ti~EAma~g~P 304 (382)
T PLN02605 231 SLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFV--TNMEEWMGACDCIITKA----GPGTIAEALIRGLP 304 (382)
T ss_pred hhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEecc--ccHHHHHHhCCEEEECC----CcchHHHHHHcCCC
Confidence 2 4565 56677664 34555554334579999999 68999999999999765 47899999999999
Q ss_pred EEEecC------CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 016648 277 VVGVRA------GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRETMGQAARQEMEKYDWRAATRTIRN 348 (385)
Q Consensus 277 vI~s~~------~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~-~~~~~~~~~~a~~~~~~~s~~~~~~~~~~ 348 (385)
+|+++. ++. +.+ .+++.|... .|+++++++|.++++| ++.+++|++++++.....+.+.+++.+.+
T Consensus 305 vI~~~~~pgqe~gn~-~~i---~~~g~g~~~--~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~~~a~~~i~~~l~~ 377 (382)
T PLN02605 305 IILNGYIPGQEEGNV-PYV---VDNGFGAFS--ESPKEIARIVAEWFGDKSDELEAMSENALKLARPEAVFDIVHDLHE 377 (382)
T ss_pred EEEecCCCccchhhH-HHH---HhCCceeec--CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 999984 333 334 345566654 6999999999999998 99999999999988877888888877653
No 71
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=99.96 E-value=6.6e-27 Score=208.51 Aligned_cols=257 Identities=17% Similarity=0.145 Sum_probs=188.7
Q ss_pred hHHHHHHhhccCC-CEEEeCCCchhH--HHHHH--HHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCC
Q 016648 52 SPRIISEVARFKP-DIIHASSPGIMV--FGALI--IAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 126 (385)
Q Consensus 52 ~~~l~~~i~~~~p-DiI~~~~~~~~~--~~~~~--~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 126 (385)
..++.+++...++ |+||++.|.... +...+ ..++.|+|+|+++||.++....... ..+..++.+++++|
T Consensus 52 ~~~~~~~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~k~i~~ihD~~~~~~~~~~------~~~~~~~~~~~~aD 125 (333)
T PRK09814 52 SKRLDGILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQVKIIILIHDIEPLRFDSNY------YLMKEEIDMLNLAD 125 (333)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCCEEEEEECCcHHHhccccc------hhhHHHHHHHHhCC
Confidence 3456677888888 999999985543 11222 2234479999999998865432111 12457788999999
Q ss_pred eEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHh
Q 016648 127 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 206 (385)
Q Consensus 127 ~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 206 (385)
.++++|+.+++.+.+.+. +..++.++++..+....... ...+....++|+|++....++.. .
T Consensus 126 ~iI~~S~~~~~~l~~~g~-~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~i~yaG~l~k~~~l~~------~ 187 (333)
T PRK09814 126 VLIVHSKKMKDRLVEEGL-TTDKIIVQGIFDYLNDIELV-----------KTPSFQKKINFAGNLEKSPFLKN------W 187 (333)
T ss_pred EEEECCHHHHHHHHHcCC-CcCceEeccccccccccccc-----------ccccCCceEEEecChhhchHHHh------c
Confidence 999999999999988754 55678777765543211110 01234568999999985433211 2
Q ss_pred CCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC-----------CCCCcHHHHHHHhcCC
Q 016648 207 LPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-----------SETLGLVVLEAMSSGI 275 (385)
Q Consensus 207 ~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~-----------~e~~~~~~~Ea~a~G~ 275 (385)
.++++++++|+|+... ....+|+|.|+++.+++..+|+. |+.+.+.. .-++|.++.||||||+
T Consensus 188 ~~~~~l~i~G~g~~~~-----~~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~ 261 (333)
T PRK09814 188 SQGIKLTVFGPNPEDL-----ENSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGL 261 (333)
T ss_pred CCCCeEEEECCCcccc-----ccCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCC
Confidence 4679999999987544 22358999999999999999998 76665432 2367999999999999
Q ss_pred cEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 016648 276 PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRT 345 (385)
Q Consensus 276 PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~ 345 (385)
|||+++.++..+++ +++.+|++++ +.+++++++..+ +++.+++|++++++..+++.-....++
T Consensus 262 PVI~~~~~~~~~~V---~~~~~G~~v~--~~~el~~~l~~~--~~~~~~~m~~n~~~~~~~~~~g~~~~~ 324 (333)
T PRK09814 262 PVIVWSKAAIADFI---VENGLGFVVD--SLEELPEIIDNI--TEEEYQEMVENVKKISKLLRNGYFTKK 324 (333)
T ss_pred CEEECCCccHHHHH---HhCCceEEeC--CHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhcchhHHH
Confidence 99999999999999 8999999998 888999999986 467789999999998766554444333
No 72
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.95 E-value=8.8e-27 Score=226.13 Aligned_cols=295 Identities=18% Similarity=0.148 Sum_probs=215.0
Q ss_pred ccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeE
Q 016648 49 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 128 (385)
Q Consensus 49 ~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 128 (385)
..+..++.+.++.. |+|++|+++.+.++.++..+..+.++.+.+|..+|....-....+.. -.-..+-.||.|
T Consensus 135 ~~FA~~i~~~~~~~--d~vWvhDYhL~llp~~lR~~~~~~~igfFlHiPFPs~e~fr~lp~r~-----~il~gll~aDli 207 (797)
T PLN03063 135 RMFLDVVKENYEEG--DVVWCHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPSRS-----ELLRAVLTADLI 207 (797)
T ss_pred HHHHHHHHHhcCCC--CEEEEecchhhhHHHHHHHhCCCCcEEEEecCCCCCHHHHhhCCCHH-----HHHHHHhcCCEE
Confidence 33444444444333 89999999888888877777788999999999887654322222211 112234568888
Q ss_pred EEcChhHHHHHHHhc----c-----------cCCCcEEEeeCCCCCCCCCCCCCChh---hHhhhcCCCCCCcEEEEEee
Q 016648 129 LVPSVAIGKDLEAAR----V-----------TAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGR 190 (385)
Q Consensus 129 i~~s~~~~~~~~~~~----~-----------~~~~~i~vi~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~ 190 (385)
-+.+....+.+.+.. + ....++.++|+|+|.+.|.+...... ...+......++.+|+++||
T Consensus 208 gF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~lIl~VgR 287 (797)
T PLN03063 208 GFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMKELKRFFAGRKVILGVDR 287 (797)
T ss_pred EeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHhcChhHHHHHHHHHHhcCCCeEEEEecc
Confidence 888888877776521 0 01246889999999987765432211 11111112346789999999
Q ss_pred ccccccHHHHHHHHHhC----CCc----eEEEEe-----CCccHHHHHHHHcCC--------------CeE-EecccChH
Q 016648 191 LGVEKSLDFLKRVMDRL----PEA----RIAFIG-----DGPYREELEKMFTGM--------------PAV-FTGMLLGE 242 (385)
Q Consensus 191 ~~~~k~~~~l~~a~~~~----~~~----~l~i~G-----~g~~~~~l~~~~~~~--------------~i~-~~g~~~~~ 242 (385)
+++.||++.+++|++++ |+. .++.++ +++..+.+++.+.+. .|+ +.+.++.+
T Consensus 288 Ld~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~ 367 (797)
T PLN03063 288 LDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFN 367 (797)
T ss_pred cccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCceeEEecCCCCHH
Confidence 99999999999999875 554 233333 333333343333211 133 44588999
Q ss_pred HHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCc----EEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 243 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P----vI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
++..+|+.||++++||..||+|++++|||+||+| +|+|..+|..+.+ +..|++++|.|+++++++|.++++
T Consensus 368 el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~~l-----~~~allVnP~D~~~lA~AI~~aL~ 442 (797)
T PLN03063 368 YLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQSL-----GAGALLVNPWNITEVSSAIKEALN 442 (797)
T ss_pred HHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCcCchhhh-----cCCeEEECCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 9999999988877 567999999999999999999999
Q ss_pred -CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 016648 319 -NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 319 -~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~ 356 (385)
+++++++..++.++.+.+++|..+++.+++ -++++..
T Consensus 443 m~~~er~~r~~~~~~~v~~~~~~~Wa~~fl~-~l~~~~~ 480 (797)
T PLN03063 443 MSDEERETRHRHNFQYVKTHSAQKWADDFMS-ELNDIIV 480 (797)
T ss_pred CCHHHHHHHHHHHHHhhhhCCHHHHHHHHHH-HHHHHhh
Confidence 788888888889999999999999999984 5555543
No 73
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.95 E-value=3.1e-26 Score=211.85 Aligned_cols=282 Identities=16% Similarity=0.208 Sum_probs=198.2
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
....+.+++++.+||++|++....+.. .+..++..++|+++..|......... .+.+..+.+.+++.+|.|++
T Consensus 112 ~~~~~~~~l~~~~Pd~v~~~~~~~~~~-~l~~~~~~~ip~vl~~~~~~~~s~~~------~~~~~~~~r~~~~~~d~ii~ 184 (425)
T PRK05749 112 LPGAVRRFLRFWRPKLVIIMETELWPN-LIAELKRRGIPLVLANARLSERSFKR------YQKFKRFYRLLFKNIDLVLA 184 (425)
T ss_pred cHHHHHHHHHhhCCCEEEEEecchhHH-HHHHHHHCCCCEEEEeccCChhhHHH------HHHHHHHHHHHHHhCCEEEE
Confidence 346888999999999999986533322 23345778999988655432211111 11234567788999999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCC-C--hhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR-S--SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 207 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~-~--~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~ 207 (385)
.|+..++.+.+.+. +.+ +.+++|. +.+...+... . ...+.+. . +++++++++|+. .|+.+.+++|++++
T Consensus 185 ~S~~~~~~l~~~g~-~~~-i~vi~n~-~~d~~~~~~~~~~~~~~r~~~--~-~~~~vil~~~~~--~~~~~~ll~A~~~l 256 (425)
T PRK05749 185 QSEEDAERFLALGA-KNE-VTVTGNL-KFDIEVPPELAARAATLRRQL--A-PNRPVWIAASTH--EGEEELVLDAHRAL 256 (425)
T ss_pred CCHHHHHHHHHcCC-CCC-cEecccc-cccCCCChhhHHHHHHHHHHh--c-CCCcEEEEeCCC--chHHHHHHHHHHHH
Confidence 99999999988753 555 8888885 2222221111 1 1112222 2 456778887764 57788899998764
Q ss_pred ----CCceEEEEeCCccH-HHHHHHHcCCC-----------------eEEecccChHHHHHHHHhCcEEEE-cCCCCCCc
Q 016648 208 ----PEARIAFIGDGPYR-EELEKMFTGMP-----------------AVFTGMLLGEELSQAYASGDVFVM-PSESETLG 264 (385)
Q Consensus 208 ----~~~~l~i~G~g~~~-~~l~~~~~~~~-----------------i~~~g~~~~~~~~~~~~~adi~v~-ps~~e~~~ 264 (385)
++++++|+|+|+.. +++++.+.+.+ +.+.+. .+|+..+|+.||++++ +|..|++|
T Consensus 257 ~~~~~~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~--~~el~~~y~~aDi~~v~~S~~e~~g 334 (425)
T PRK05749 257 LKQFPNLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT--MGELGLLYAIADIAFVGGSLVKRGG 334 (425)
T ss_pred HHhCCCcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec--HHHHHHHHHhCCEEEECCCcCCCCC
Confidence 78999999999875 67777766443 223332 2699999999999655 67778999
Q ss_pred HHHHHHHhcCCcEEEecC-CCCCcccccCCC-CCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHH
Q 016648 265 LVVLEAMSSGIPVVGVRA-GGIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAA 342 (385)
Q Consensus 265 ~~~~Ea~a~G~PvI~s~~-~~~~e~~~~~~~-~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~ 342 (385)
.+++|||+||+|||+++. ++..+.. +. ..+|.++.++|+++++++|.++++|++.+++|+++|++.+++. ...
T Consensus 335 ~~~lEAma~G~PVI~g~~~~~~~e~~---~~~~~~g~~~~~~d~~~La~~l~~ll~~~~~~~~m~~~a~~~~~~~--~~~ 409 (425)
T PRK05749 335 HNPLEPAAFGVPVISGPHTFNFKEIF---ERLLQAGAAIQVEDAEDLAKAVTYLLTDPDARQAYGEAGVAFLKQN--QGA 409 (425)
T ss_pred CCHHHHHHhCCCEEECCCccCHHHHH---HHHHHCCCeEEECCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhC--ccH
Confidence 999999999999999765 4555655 22 2357777788999999999999999999999999999998654 245
Q ss_pred HHHHHHHHHHHHH
Q 016648 343 TRTIRNEQYNAAI 355 (385)
Q Consensus 343 ~~~~~~~iy~~~~ 355 (385)
.+++. +++++.+
T Consensus 410 ~~~~~-~~l~~~l 421 (425)
T PRK05749 410 LQRTL-QLLEPYL 421 (425)
T ss_pred HHHHH-HHHHHhc
Confidence 55555 3555443
No 74
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.95 E-value=5.1e-26 Score=205.64 Aligned_cols=256 Identities=20% Similarity=0.228 Sum_probs=191.4
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
..++.+++++.+||+||++++.. .+.+..+++..++|+++..|+.++. ...+.+++.+|.+++.
T Consensus 78 ~~~~~~~i~~~~pDvI~~~~~~~-~~~~~~~a~~~~~p~v~~~~~~~~~---------------~~~~~~~~~~~~vi~~ 141 (350)
T cd03785 78 VLQARKILKKFKPDVVVGFGGYV-SGPVGLAAKLLGIPLVIHEQNAVPG---------------LANRLLARFADRVALS 141 (350)
T ss_pred HHHHHHHHHhcCCCEEEECCCCc-chHHHHHHHHhCCCEEEEcCCCCcc---------------HHHHHHHHhhCEEEEc
Confidence 45678889999999999997633 4445566788899998765543211 1345667789999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHH-HHHHHHHhCC--
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLD-FLKRVMDRLP-- 208 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~-~l~~a~~~~~-- 208 (385)
|+...+. .+..++.+++||++.+.+.+... +.+.. .++++++++++|+....|+.. .++++++.++
T Consensus 142 s~~~~~~------~~~~~~~~i~n~v~~~~~~~~~~----~~~~~-~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~ 210 (350)
T cd03785 142 FPETAKY------FPKDKAVVTGNPVREEILALDRE----RARLG-LRPGKPTLLVFGGSQGARAINEAVPEALAELLRK 210 (350)
T ss_pred chhhhhc------CCCCcEEEECCCCchHHhhhhhh----HHhcC-CCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhcc
Confidence 9988776 25678999999999876643211 22222 244567777777666666664 4558877773
Q ss_pred CceE-EEEeCCccHHHHHHHHcC--CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC-
Q 016648 209 EARI-AFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG- 284 (385)
Q Consensus 209 ~~~l-~i~G~g~~~~~l~~~~~~--~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~- 284 (385)
+..+ .++|.| +.+++++...+ .++++.|++ +++.++|+.||+++.++. +++++|||++|+|+|+++.++
T Consensus 211 ~~~~~~i~G~g-~~~~l~~~~~~~~~~v~~~g~~--~~~~~~l~~ad~~v~~sg----~~t~~Eam~~G~Pvv~~~~~~~ 283 (350)
T cd03785 211 RLQVIHQTGKG-DLEEVKKAYEELGVNYEVFPFI--DDMAAAYAAADLVISRAG----ASTVAELAALGLPAILIPLPYA 283 (350)
T ss_pred CeEEEEEcCCc-cHHHHHHHHhccCCCeEEeehh--hhHHHHHHhcCEEEECCC----HhHHHHHHHhCCCEEEeecCCC
Confidence 5554 467877 55667666654 489999998 899999999999998662 689999999999999987654
Q ss_pred -------CCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHH
Q 016648 285 -------IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATR 344 (385)
Q Consensus 285 -------~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~ 344 (385)
..+.+ .+..+|++++++ |+++++++|..+++|++.++++++++++..+.+.-+++++
T Consensus 284 ~~~~~~~~~~~l---~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~ 349 (350)
T cd03785 284 ADDHQTANARAL---VKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAEAARSLARPDAAERIAD 349 (350)
T ss_pred CCCcHHHhHHHH---HhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHh
Confidence 13455 556789999876 8999999999999999999999999998877777776654
No 75
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.95 E-value=7.2e-26 Score=204.92 Aligned_cols=263 Identities=23% Similarity=0.233 Sum_probs=194.8
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
....++.+.+++.+||+||+|++.. .+.+.+.++..++|+|++.|+..+. ...+++++.+|.++
T Consensus 78 ~~~~~~~~~ik~~~pDvv~~~~~~~-~~~~~~~~~~~~~p~v~~~~~~~~~---------------~~~r~~~~~~d~ii 141 (357)
T PRK00726 78 KGVLQARKILKRFKPDVVVGFGGYV-SGPGGLAARLLGIPLVIHEQNAVPG---------------LANKLLARFAKKVA 141 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcc-hhHHHHHHHHcCCCEEEEcCCCCcc---------------HHHHHHHHHhchhe
Confidence 3455778889999999999998533 3334556778899999866653221 14566788999999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHH-HHHHhCC
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLK-RVMDRLP 208 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~-~a~~~~~ 208 (385)
+.++... .+ .+..++.++|||++.+.+.+... ..+.. ..++.++++++|+....++...++ ++++++.
T Consensus 142 ~~~~~~~---~~---~~~~~i~vi~n~v~~~~~~~~~~----~~~~~-~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~ 210 (357)
T PRK00726 142 TAFPGAF---PE---FFKPKAVVTGNPVREEILALAAP----PARLA-GREGKPTLLVVGGSQGARVLNEAVPEALALLP 210 (357)
T ss_pred ECchhhh---hc---cCCCCEEEECCCCChHhhcccch----hhhcc-CCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh
Confidence 9887442 12 36789999999999876543211 11111 134567888899888778765544 8887774
Q ss_pred C--ceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCC-
Q 016648 209 E--ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI- 285 (385)
Q Consensus 209 ~--~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~- 285 (385)
+ ..+.++|+|+..+..+......++.+.|++ +++.++|+.||+++.++. +.+++|||++|+|+|+++.++.
T Consensus 211 ~~~~~~~~~G~g~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~~d~~i~~~g----~~~~~Ea~~~g~Pvv~~~~~~~~ 284 (357)
T PRK00726 211 EALQVIHQTGKGDLEEVRAAYAAGINAEVVPFI--DDMAAAYAAADLVICRAG----ASTVAELAAAGLPAILVPLPHAA 284 (357)
T ss_pred hCcEEEEEcCCCcHHHHHHHhhcCCcEEEeehH--hhHHHHHHhCCEEEECCC----HHHHHHHHHhCCCEEEecCCCCC
Confidence 3 456678988754433333122238999998 899999999999998652 6899999999999999876431
Q ss_pred -------CcccccCCCCCeeEeeCCCC--HHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 016648 286 -------PDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRN 348 (385)
Q Consensus 286 -------~e~~~~~~~~~~g~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~ 348 (385)
.+.+ .+..+|++++++| +++++++|+++++|++.+++|++++++..++++.+.+++.+.+
T Consensus 285 ~~~~~~~~~~i---~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (357)
T PRK00726 285 DDHQTANARAL---VDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALGKPDAAERLADLIEE 353 (357)
T ss_pred cCcHHHHHHHH---HHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Confidence 2445 5677899998877 9999999999999999999999999998888999999888863
No 76
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.95 E-value=7.8e-26 Score=206.31 Aligned_cols=271 Identities=16% Similarity=0.163 Sum_probs=194.8
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
.+++.+++++.+||+||++.+.. .+..+..++..++|++..+++.... ..++.+++|.+++.
T Consensus 93 ~~~l~~~l~~~~pD~Vi~~~~~~-~~~~~~~~~~~~ip~~~~~td~~~~-----------------~~~~~~~ad~i~~~ 154 (380)
T PRK13609 93 RKRLKLLLQAEKPDIVINTFPII-AVPELKKQTGISIPTYNVLTDFCLH-----------------KIWVHREVDRYFVA 154 (380)
T ss_pred HHHHHHHHHHhCcCEEEEcChHH-HHHHHHHhcCCCCCeEEEeCCCCCC-----------------cccccCCCCEEEEC
Confidence 46788999999999999987643 3333333344568887655553211 12356789999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCCCce
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEAR 211 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~ 211 (385)
|+...+.+.+.+ .+.+++.+++++++.... ........+.+....++...++++.|+....|++..+++++.+.++++
T Consensus 155 s~~~~~~l~~~g-i~~~ki~v~G~p~~~~f~-~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l~~~~~~~ 232 (380)
T PRK13609 155 TDHVKKVLVDIG-VPPEQVVETGIPIRSSFE-LKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSLMSVPDLQ 232 (380)
T ss_pred CHHHHHHHHHcC-CChhHEEEECcccChHHc-CcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHHhhCCCcE
Confidence 999999998865 467788888776654322 222222333344332333445667788888899999999998778899
Q ss_pred EEEEeC-C-ccHHHHHHHHcCC--CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec-CCCCC
Q 016648 212 IAFIGD-G-PYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR-AGGIP 286 (385)
Q Consensus 212 l~i~G~-g-~~~~~l~~~~~~~--~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~-~~~~~ 286 (385)
++++|+ + ...+.+++...+. ++++.|++ +++.++|+.||+++. ++.|.+++|||+||+|+|+++ .++..
T Consensus 233 ~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~--~~~~~l~~~aD~~v~----~~gg~t~~EA~a~g~PvI~~~~~~g~~ 306 (380)
T PRK13609 233 VVVVCGKNEALKQSLEDLQETNPDALKVFGYV--ENIDELFRVTSCMIT----KPGGITLSEAAALGVPVILYKPVPGQE 306 (380)
T ss_pred EEEEeCCCHHHHHHHHHHHhcCCCcEEEEech--hhHHHHHHhccEEEe----CCCchHHHHHHHhCCCEEECCCCCCcc
Confidence 887753 3 3456676665433 69999999 679999999999884 345889999999999999975 44421
Q ss_pred ----cccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 016648 287 ----DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 287 ----e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~ 354 (385)
+++ .+ +|..+...|+++++++|.++++|++.+++|++++++..+.++++.+++.+++ ++...
T Consensus 307 ~~n~~~~---~~--~G~~~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~i~~-~~~~~ 372 (380)
T PRK13609 307 KENAMYF---ER--KGAAVVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLYLPEPADHIVDDILA-ENHVE 372 (380)
T ss_pred hHHHHHH---Hh--CCcEEEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhCCCchHHHHHHHHHH-hhhhh
Confidence 233 22 2333345699999999999999999999999999887777999999999874 55433
No 77
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.94 E-value=2.2e-25 Score=203.07 Aligned_cols=272 Identities=14% Similarity=0.226 Sum_probs=194.0
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
.+++.+++++++||+|+++.+.. .+..+..++..++|++...+|.... ..++.+.+|.+++.
T Consensus 93 ~~~l~~~l~~~kPDvVi~~~p~~-~~~~l~~~~~~~iP~~~v~td~~~~-----------------~~w~~~~~d~~~v~ 154 (391)
T PRK13608 93 LNKLINLLIKEKPDLILLTFPTP-VMSVLTEQFNINIPVATVMTDYRLH-----------------KNWITPYSTRYYVA 154 (391)
T ss_pred HHHHHHHHHHhCcCEEEECCcHH-HHHHHHHhcCCCCCEEEEeCCCCcc-----------------cccccCCCCEEEEC
Confidence 46888999999999999987643 2222222234578986654443110 11345789999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHH-HhCCCc
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVM-DRLPEA 210 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~-~~~~~~ 210 (385)
|+.+++.+.+.+ .+.+++.+++++++.....+ ......+.++...++...++++.|+++..|+++.+++++ +..+++
T Consensus 155 s~~~~~~l~~~g-i~~~ki~v~GiPv~~~f~~~-~~~~~~~~~~~l~~~~~~ilv~~G~lg~~k~~~~li~~~~~~~~~~ 232 (391)
T PRK13608 155 TKETKQDFIDVG-IDPSTVKVTGIPIDNKFETP-IDQKQWLIDNNLDPDKQTILMSAGAFGVSKGFDTMITDILAKSANA 232 (391)
T ss_pred CHHHHHHHHHcC-CCHHHEEEECeecChHhccc-ccHHHHHHHcCCCCCCCEEEEECCCcccchhHHHHHHHHHhcCCCc
Confidence 999999998865 46788999888877543322 222233333333233344567789999889999999985 344678
Q ss_pred eEEEE-eCCc-cHHHHHHHHc-CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecC-CC--
Q 016648 211 RIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA-GG-- 284 (385)
Q Consensus 211 ~l~i~-G~g~-~~~~l~~~~~-~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~-~~-- 284 (385)
+++++ |.+. ..+.+++... ..++.+.|++ +++.++|+.||++|. .+.|+++.|||++|+|+|+++. ++
T Consensus 233 ~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~--~~~~~~~~~aDl~I~----k~gg~tl~EA~a~G~PvI~~~~~pgqe 306 (391)
T PRK13608 233 QVVMICGKSKELKRSLTAKFKSNENVLILGYT--KHMNEWMASSQLMIT----KPGGITISEGLARCIPMIFLNPAPGQE 306 (391)
T ss_pred eEEEEcCCCHHHHHHHHHHhccCCCeEEEecc--chHHHHHHhhhEEEe----CCchHHHHHHHHhCCCEEECCCCCCcc
Confidence 88665 5443 2344554432 3479999998 789999999999996 3458899999999999999853 33
Q ss_pred --CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 016648 285 --IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 285 --~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~ 355 (385)
...++ .+.+.|+.. +|.++++++|.++++|++.+++|++++++..+.++++.+++.+. ++++.+.
T Consensus 307 ~~N~~~~---~~~G~g~~~--~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~~~~s~~~i~~~l~-~l~~~~~ 373 (391)
T PRK13608 307 LENALYF---EEKGFGKIA--DTPEEAIKIVASLTNGNEQLTNMISTMEQDKIKYATQTICRDLL-DLIGHSS 373 (391)
T ss_pred hhHHHHH---HhCCcEEEe--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHhhhhh
Confidence 11233 344556554 49999999999999999999999999999888899999999997 4666554
No 78
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.94 E-value=1.8e-25 Score=217.70 Aligned_cols=291 Identities=20% Similarity=0.263 Sum_probs=206.8
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
++.++.+.++.. |+|++|+++.+.++.++..+..+.++.+.+|-.+|....-....+.. -.-..+..+|.|-+
T Consensus 123 fA~~~~~~~~~~--d~vwvhDYhl~l~p~~lr~~~~~~~igfFlH~pfP~~~~f~~lp~~~-----~ll~~ll~~Dligf 195 (726)
T PRK14501 123 FAEAIAAIARPG--DVVWVHDYQLMLLPAMLRERLPDARIGFFLHIPFPSFEVFRLLPWRE-----EILEGLLGADLIGF 195 (726)
T ss_pred HHHHHHHhcCCC--CEEEEeCchhhhHHHHHHhhCCCCcEEEEeeCCCCChHHHhhCCChH-----HHHHHHhcCCeEEe
Confidence 344444444433 99999999888887776556667899999999887643222222111 12234566898888
Q ss_pred cChhHHHHHHHhc----c-----------cCCCcEEEeeCCCCCCCCCCCCCChhh---HhhhcCCCCCCcEEEEEeecc
Q 016648 131 PSVAIGKDLEAAR----V-----------TAANKIRIWKKGVDSESFHPRFRSSEM---RWRLSNGEPDKPLIVHVGRLG 192 (385)
Q Consensus 131 ~s~~~~~~~~~~~----~-----------~~~~~i~vi~~~v~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~G~~~ 192 (385)
.+....+.+.+.. + ....++.++|+|+|.+.|.+....... ..++....+++++|+++||++
T Consensus 196 ~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~~~~~~~~~~~lr~~~~~~~~il~VgRl~ 275 (726)
T PRK14501 196 HTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQDLRGRKIILSIDRLD 275 (726)
T ss_pred CCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhcCchHHHHHHHHHHHcCCCEEEEEecCcc
Confidence 8888666654431 0 012358899999999988664332221 111112234677999999999
Q ss_pred ccccHHHHHHHHHhC----CC----ceEEEEeC----C-ccHHHHHHHHcC----C----------C-eEEecccChHHH
Q 016648 193 VEKSLDFLKRVMDRL----PE----ARIAFIGD----G-PYREELEKMFTG----M----------P-AVFTGMLLGEEL 244 (385)
Q Consensus 193 ~~k~~~~l~~a~~~~----~~----~~l~i~G~----g-~~~~~l~~~~~~----~----------~-i~~~g~~~~~~~ 244 (385)
+.||+..+++|++++ |+ ++++++|. + +..+.+++.+.+ . . +.+.|+++.+++
T Consensus 276 ~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l 355 (726)
T PRK14501 276 YTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEEL 355 (726)
T ss_pred cccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHH
Confidence 999999999999875 43 67888873 2 222233332221 0 1 357789999999
Q ss_pred HHHHHhCcEEEEcCCCCCCcHHHHHHHhcCC-----cEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 245 SQAYASGDVFVMPSESETLGLVVLEAMSSGI-----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 245 ~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~-----PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
..+|+.||++++||..||+|++++|||+||+ ||++...|+..++. .|++++|.|+++++++|.+++++
T Consensus 356 ~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l~-------~~llv~P~d~~~la~ai~~~l~~ 428 (726)
T PRK14501 356 VALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAELA-------EALLVNPNDIEGIAAAIKRALEM 428 (726)
T ss_pred HHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHHhC-------cCeEECCCCHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999955 66666667666654 37999999999999999999985
Q ss_pred H-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 016648 320 Q-ELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 320 ~-~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~ 356 (385)
+ ++++...+++++.+++|||+.++++++ ..|+++..
T Consensus 429 ~~~e~~~r~~~~~~~v~~~~~~~w~~~~l-~~l~~~~~ 465 (726)
T PRK14501 429 PEEEQRERMQAMQERLRRYDVHKWASDFL-DELREAAE 465 (726)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHh
Confidence 4 455666677888888999999999998 56766644
No 79
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.93 E-value=8.3e-25 Score=176.91 Aligned_cols=153 Identities=38% Similarity=0.734 Sum_probs=136.1
Q ss_pred CCCCCcEEEEEeeccccccHHHHHHHHHhC-----CCceEEEEeCCccHHHHHHHHcC----CCeEEecccChHHHHHHH
Q 016648 178 GEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-----PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAY 248 (385)
Q Consensus 178 ~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~-----~~~~l~i~G~g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~ 248 (385)
..+++++|+++|++.+.||++.+++++..+ +++.++|+|.+.....+...... .++.+.|.++.+++..+|
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~ 90 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFLGYVPDDELDELY 90 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEEESHSHHHHHHHH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccccccccccccccc
Confidence 356788999999999999999999999864 68999999977776666665543 369999999999999999
Q ss_pred HhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHH
Q 016648 249 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQ 328 (385)
Q Consensus 249 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 328 (385)
+.||++++||..|++|.+++|||++|+|||+++.++..+++ .++.+|+++++.|+++++++|.+++++++.++.|++
T Consensus 91 ~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e~~---~~~~~g~~~~~~~~~~l~~~i~~~l~~~~~~~~l~~ 167 (172)
T PF00534_consen 91 KSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNEII---NDGVNGFLFDPNDIEELADAIEKLLNDPELRQKLGK 167 (172)
T ss_dssp HHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHHHS---GTTTSEEEESTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeccccccccccccccccccccccceeeccccCCceee---ccccceEEeCCCCHHHHHHHHHHHHCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 888999999999999999999999999999999999
Q ss_pred HHHHH
Q 016648 329 AARQE 333 (385)
Q Consensus 329 ~a~~~ 333 (385)
+++++
T Consensus 168 ~~~~~ 172 (172)
T PF00534_consen 168 NARER 172 (172)
T ss_dssp HHHHH
T ss_pred HhcCC
Confidence 99864
No 80
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.93 E-value=7.9e-24 Score=191.20 Aligned_cols=256 Identities=20% Similarity=0.224 Sum_probs=181.4
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
...++.+++++.+||+||+|.+.. .+.+..+++..++|+++..++..+ ....+++.+.+|.+++
T Consensus 78 ~~~~l~~~i~~~~pDvVi~~~~~~-~~~~~~~~~~~~~p~v~~~~~~~~---------------~~~~~~~~~~~d~ii~ 141 (348)
T TIGR01133 78 AVFQARRILKKFKPDAVIGFGGYV-SGPAGLAAKLLGIPLFHHEQNAVP---------------GLTNKLLSRFAKKVLI 141 (348)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcc-cHHHHHHHHHcCCCEEEECCCCCc---------------cHHHHHHHHHhCeeEE
Confidence 345778889999999999997643 333444567788999753332111 1145677889999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHH-HHHHHHhC--
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDF-LKRVMDRL-- 207 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~-l~~a~~~~-- 207 (385)
+|+.+.+.+ +..+++||++...+.+... +.+.. .+++.++++++|+....|++.. ++++++.+
T Consensus 142 ~~~~~~~~~---------~~~~i~n~v~~~~~~~~~~----~~~~~-~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~ 207 (348)
T TIGR01133 142 SFPGAKDHF---------EAVLVGNPVRQEIRSLPVP----RERFG-LREGKPTILVLGGSQGAKILNELVPKALAKLAE 207 (348)
T ss_pred CchhHhhcC---------CceEEcCCcCHHHhcccch----hhhcC-CCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh
Confidence 999887654 2378999998765543211 11222 2346778999987777788654 55787766
Q ss_pred CCceEEEEeCCccHHHHHHHHcCCCe-EEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCC-
Q 016648 208 PEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI- 285 (385)
Q Consensus 208 ~~~~l~i~G~g~~~~~l~~~~~~~~i-~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~- 285 (385)
++.++++++++...+.+++...+.++ ....+.. .++.++|+.||++|.++ | |++++|||++|+|+|+++.++.
T Consensus 208 ~~~~~~~~~g~~~~~~l~~~~~~~~l~~~v~~~~-~~~~~~l~~ad~~v~~~---g-~~~l~Ea~~~g~Pvv~~~~~~~~ 282 (348)
T TIGR01133 208 KGIQIVHQTGKNDLEKVKNVYQELGIEAIVTFID-ENMAAAYAAADLVISRA---G-ASTVAELAAAGVPAILIPYPYAA 282 (348)
T ss_pred cCcEEEEECCcchHHHHHHHHhhCCceEEecCcc-cCHHHHHHhCCEEEECC---C-hhHHHHHHHcCCCEEEeeCCCCc
Confidence 34566444433344667776665543 3334443 38999999999999865 2 7899999999999999987542
Q ss_pred ------CcccccCCCCCeeEeeCCCC--HHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHH
Q 016648 286 ------PDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATR 344 (385)
Q Consensus 286 ------~e~~~~~~~~~~g~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~ 344 (385)
.+++ .++.+|++++++| ++++++++.++++|++.+++|+++++++.++...+++++
T Consensus 283 ~~~~~~~~~i---~~~~~G~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~ 346 (348)
T TIGR01133 283 DDQYYNAKFL---EDLGAGLVIRQKELLPEKLLEALLKLLLDPANLEAMAEAARKLAKPDAAKRIAE 346 (348)
T ss_pred cchhhHHHHH---HHCCCEEEEecccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcCCccHHHHHHh
Confidence 2466 6788999998776 999999999999999999999999988776666666554
No 81
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=6.9e-23 Score=185.59 Aligned_cols=292 Identities=22% Similarity=0.270 Sum_probs=210.5
Q ss_pred cCCCEEEeCCCchhHHHHHHHHH---HhCCCEEEEEecCCCccccc------ccccc--------cchhHHHHHHHHHHh
Q 016648 62 FKPDIIHASSPGIMVFGALIIAK---LLCVPIVMSYHTHVPVYIPR------YTFSW--------LVKPMWLVIKFLHRA 124 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~---~~~~p~v~~~h~~~~~~~~~------~~~~~--------~~~~~~~~~~~~~~~ 124 (385)
..|||||+|++.....++++... ...+|.|+|+|+..-..... ..... .......+++.-+..
T Consensus 129 ~~pDIvH~hDWqt~L~~~~lk~~~~~~~~i~tVfTIHNl~~qG~~~~~~~~~lgLp~~~~~~~~l~~~~~~~~lK~gi~~ 208 (487)
T COG0297 129 WLPDIVHAHDWQTGLLPAYLKQRYRSGYIIPTVFTIHNLAYQGLFRLQYLEELGLPFEAYASFGLEFYGQISFLKGGLYY 208 (487)
T ss_pred CCCCEEEeecHHHHHHHHHHhhcccccccCCeEEEEeeceeecccchhhHHHhcCCHHHhhhceeeecCcchhhhhhhee
Confidence 36999999999766555554332 45789999999843221111 00000 000112466777889
Q ss_pred CCeEEEcChhHHHHHHHh-c--------ccCCCcEEEeeCCCCCCCCCCCCCCh------------------hhHhhhcC
Q 016648 125 ADLTLVPSVAIGKDLEAA-R--------VTAANKIRIWKKGVDSESFHPRFRSS------------------EMRWRLSN 177 (385)
Q Consensus 125 ad~ii~~s~~~~~~~~~~-~--------~~~~~~i~vi~~~v~~~~~~~~~~~~------------------~~~~~~~~ 177 (385)
||.|.++|+...+++... + .....++.-|-||+|.+.++|..... .+..+...
T Consensus 209 ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~~~~~~y~~~~~~~k~~nk~~L~~~~gL 288 (487)
T COG0297 209 ADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDPYIAANYSAEVLPAKAENKVALQERLGL 288 (487)
T ss_pred ccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCcccccchhccCCccchhhhHHHHHHHHHHhCC
Confidence 999999999999988721 1 11235778899999999887754431 01122222
Q ss_pred C-CCCCcEEEEEeeccccccHHHHHHHHHhC--CCceEEEEeCCc--cHHHHHHHHcCC--CeEEecccChHHHHHHHHh
Q 016648 178 G-EPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTGM--PAVFTGMLLGEELSQAYAS 250 (385)
Q Consensus 178 ~-~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G~g~--~~~~l~~~~~~~--~i~~~g~~~~~~~~~~~~~ 250 (385)
. ..+.+.+.++||+...||++.+++++..+ ...++++.|.|+ ....+..+.... ++.+.-..+..-...+++.
T Consensus 289 ~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd~~le~~~~~la~~~~~~~~~~i~~~~~la~~i~ag 368 (487)
T COG0297 289 DVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGDPELEEALRALASRHPGRVLVVIGYDEPLAHLIYAG 368 (487)
T ss_pred CCCCCCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCcHHHHHHHHHHHHhcCceEEEEeeecHHHHHHHHhc
Confidence 2 23569999999999999999999999877 458999999883 233444444433 4555555555667789999
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccC-----CCCCeeEeeCCCCHHHHHHHHhHhhc---CHHH
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED-----QDGKIGYLFNPGDLDDCLSKLEPLLY---NQEL 322 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~-----~~~~~g~~~~~~~~~~l~~~i~~ll~---~~~~ 322 (385)
||++++||+.|++|++-++||..|+++|+..+||.++.+.+. ....+|+++.+.|+++++.+|.+.+. ++..
T Consensus 369 aD~~lmPSrfEPcGL~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~gtGf~f~~~~~~~l~~al~rA~~~y~~~~~ 448 (487)
T COG0297 369 ADVILMPSRFEPCGLTQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGVGTGFLFLQTNPDHLANALRRALVLYRAPPL 448 (487)
T ss_pred CCEEEeCCcCcCCcHHHHHHHHcCCcceEcccCCccceecCccchhccCceeEEEEecCCHHHHHHHHHHHHHHhhCCHH
Confidence 999999999999999999999999999999999999998432 12579999999999999999998775 3333
Q ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 016648 323 -RETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 323 -~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~ 356 (385)
.+.+..++.. ..|+|+..++++. ++|+.+++
T Consensus 449 ~w~~~~~~~m~--~d~sw~~sa~~y~-~lY~~~~~ 480 (487)
T COG0297 449 LWRKVQPNAMG--ADFSWDLSAKEYV-ELYKPLLS 480 (487)
T ss_pred HHHHHHHhhcc--cccCchhHHHHHH-HHHHHHhc
Confidence 5555555554 5799999999997 79999875
No 82
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.91 E-value=8.9e-23 Score=185.77 Aligned_cols=278 Identities=17% Similarity=0.095 Sum_probs=206.8
Q ss_pred CEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHHHhc-
Q 016648 65 DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR- 143 (385)
Q Consensus 65 DiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~- 143 (385)
|+|++|+++.+.++.++-.+..+.++-+.+|..+|....-....+.. -.-..+-.||.|-+.+...++.+.+..
T Consensus 134 d~vWVhDYhL~llp~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r~-----~ll~glL~aDliGFqt~~y~~~Fl~~~~ 208 (487)
T TIGR02398 134 ATVWVHDYNLWLVPGYIRQLRPDLKIAFFHHTPFPSADVFNILPWRE-----QIIGSLLCCDYIGFHIPRYVENFVDAAR 208 (487)
T ss_pred CEEEEecchhhHHHHHHHHhCCCCeEEEEeeCCCCChHHHhhCCchH-----HHHHHHhcCCeEEeCCHHHHHHHHHHHH
Confidence 89999999888887776656667889999999887643222222111 122245569999999988887765531
Q ss_pred ---cc--------------------------------CCCcEEEeeCCCCCCCCCCCCCCh---hhHhhhcCCCCCCcEE
Q 016648 144 ---VT--------------------------------AANKIRIWKKGVDSESFHPRFRSS---EMRWRLSNGEPDKPLI 185 (385)
Q Consensus 144 ---~~--------------------------------~~~~i~vi~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~i 185 (385)
+. ..-++.++|.|||++.|....... +..........++.+|
T Consensus 209 r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~~~~~~~~~~~~lr~~~~~~kiI 288 (487)
T TIGR02398 209 GLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSALAAASIREMMERIRSELAGVKLI 288 (487)
T ss_pred HHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHhcCchHHHHHHHHHHHcCCceEE
Confidence 10 011278899999999885543222 1111122123367899
Q ss_pred EEEeeccccccHHHHHHHHHhC----C----CceEEEEeCCc---------cHHHHHHHHcCC-----------CeEEec
Q 016648 186 VHVGRLGVEKSLDFLKRVMDRL----P----EARIAFIGDGP---------YREELEKMFTGM-----------PAVFTG 237 (385)
Q Consensus 186 ~~~G~~~~~k~~~~l~~a~~~~----~----~~~l~i~G~g~---------~~~~l~~~~~~~-----------~i~~~g 237 (385)
+.++|++..||+...++|++++ | ++.++++|.+. ...++++++.+. -+.+.+
T Consensus 289 l~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~ 368 (487)
T TIGR02398 289 LSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTR 368 (487)
T ss_pred EEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcC
Confidence 9999999999999999999775 5 46888888542 233444443321 157889
Q ss_pred ccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCC----cEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHH
Q 016648 238 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 313 (385)
Q Consensus 238 ~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~----PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i 313 (385)
.++.+++..+|+.||+++.++..||++++..||++|+. |+|.|..+|..+.+ ..+++++|.|+++++++|
T Consensus 369 ~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaGaa~~l------~~AllVNP~d~~~~A~ai 442 (487)
T TIGR02398 369 SLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVEL------KGALLTNPYDPVRMDETI 442 (487)
T ss_pred CCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEeccccchhhc------CCCEEECCCCHHHHHHHH
Confidence 99999999999999999999999999999999999988 99999999988766 247999999999999999
Q ss_pred hHhhcCH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 016648 314 EPLLYNQ-ELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 353 (385)
Q Consensus 314 ~~ll~~~-~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~ 353 (385)
.++++.+ +++++..++.++.+.+++...+++.+++++-.+
T Consensus 443 ~~AL~m~~~Er~~R~~~l~~~v~~~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 443 YVALAMPKAEQQARMREMFDAVNYYDVQRWADEFLAAVSPQ 483 (487)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHhhhc
Confidence 9999954 466666667777788999999999998665443
No 83
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.90 E-value=4.4e-22 Score=180.57 Aligned_cols=275 Identities=19% Similarity=0.178 Sum_probs=185.9
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHH-HHHhCCeEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKF-LHRAADLTL 129 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~ii 129 (385)
...++.+++++.+||+||+|+.....+++.++++..|+|++..-++.... ... ..+. ....+. +.+.+|.++
T Consensus 74 ~~~~l~~~l~~~~pDiv~~~gd~~~~la~a~aa~~~~ipv~h~~~g~~s~--~~~--~~~~---~~~~r~~~~~~ad~~~ 146 (365)
T TIGR00236 74 MLEGLEELLLEEKPDIVLVQGDTTTTLAGALAAFYLQIPVGHVEAGLRTG--DRY--SPMP---EEINRQLTGHIADLHF 146 (365)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHhCCCEEEEeCCCCcC--CCC--CCCc---cHHHHHHHHHHHHhcc
Confidence 35678899999999999999865666767778888999987543332110 000 0000 112233 345689999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCC-CCCCCCCCCC-ChhhHhhhcCCCCCCcEEEEEe-ec-cccccHHHHHHHHH
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFR-SSEMRWRLSNGEPDKPLIVHVG-RL-GVEKSLDFLKRVMD 205 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v-~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~G-~~-~~~k~~~~l~~a~~ 205 (385)
++|+..++.+.+.+ .+++++.+++|++ |......... ....+.+. . .++.++++.+ +. ...|+++.++++++
T Consensus 147 ~~s~~~~~~l~~~G-~~~~~I~vign~~~d~~~~~~~~~~~~~~~~~~--~-~~~~~vl~~~hr~~~~~k~~~~ll~a~~ 222 (365)
T TIGR00236 147 APTEQAKDNLLREN-VKADSIFVTGNTVIDALLTNVEIAYSSPVLSEF--G-EDKRYILLTLHRRENVGEPLENIFKAIR 222 (365)
T ss_pred CCCHHHHHHHHHcC-CCcccEEEeCChHHHHHHHHHhhccchhHHHhc--C-CCCCEEEEecCchhhhhhHHHHHHHHHH
Confidence 99999999998875 5778999999996 4322111111 11222222 2 2334555555 33 24588999999987
Q ss_pred hC----CCceEEEEeCC-c-cHHHHHHHHc-CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 206 RL----PEARIAFIGDG-P-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 206 ~~----~~~~l~i~G~g-~-~~~~l~~~~~-~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
++ +++++++.|.+ + ..+.+.+... ..++++.|.++..++..+++.||+++.+| |..++|||++|+|+|
T Consensus 223 ~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-----g~~~~EA~a~g~PvI 297 (365)
T TIGR00236 223 EIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-----GGVQEEAPSLGKPVL 297 (365)
T ss_pred HHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-----hhHHHHHHHcCCCEE
Confidence 75 57888887643 2 2222333322 24799999999999999999999999877 556899999999999
Q ss_pred Ee-cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 016648 279 GV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 346 (385)
Q Consensus 279 ~s-~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~ 346 (385)
++ +.++.++.+ ..+ .+.++ +.|++++++++.++++|++.+++++.+...+.+..+++++++.+
T Consensus 298 ~~~~~~~~~e~~---~~g-~~~lv-~~d~~~i~~ai~~ll~~~~~~~~~~~~~~~~g~~~a~~ri~~~l 361 (365)
T TIGR00236 298 VLRDTTERPETV---EAG-TNKLV-GTDKENITKAAKRLLTDPDEYKKMSNASNPYGDGEASERIVEEL 361 (365)
T ss_pred ECCCCCCChHHH---hcC-ceEEe-CCCHHHHHHHHHHHHhChHHHHHhhhcCCCCcCchHHHHHHHHH
Confidence 96 667777887 555 44455 46999999999999999988888776653332334455555544
No 84
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.89 E-value=1.1e-21 Score=178.22 Aligned_cols=259 Identities=17% Similarity=0.151 Sum_probs=178.9
Q ss_pred ccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeE
Q 016648 49 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 128 (385)
Q Consensus 49 ~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 128 (385)
.....++.+.+++.+||+||+|+.....+++..+++..|+|++...|+........ ........+.+.+|.+
T Consensus 74 ~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~~g~~s~~~~~--------~~~~~r~~~~~~ad~~ 145 (363)
T cd03786 74 AGLLIGLEAVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVEAGLRSFDRGM--------PDEENRHAIDKLSDLH 145 (363)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEecccccCCCCC--------CchHHHHHHHHHhhhc
Confidence 33467788889999999999997655556667778888999886555432210000 0011223456789999
Q ss_pred EEcChhHHHHHHHhcccCCCcEEEeeCCC-CCCCCCCCCCChh-hHhhhcCCCCCCcEEEEEeeccc---cccHHHHHHH
Q 016648 129 LVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSE-MRWRLSNGEPDKPLIVHVGRLGV---EKSLDFLKRV 203 (385)
Q Consensus 129 i~~s~~~~~~~~~~~~~~~~~i~vi~~~v-~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~G~~~~---~k~~~~l~~a 203 (385)
+++|+..++.+.+.+ .+++++.+++|++ |...+........ .+.... .++++.++++.|+... .|+++.++++
T Consensus 146 ~~~s~~~~~~l~~~G-~~~~kI~vign~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~vlv~~~r~~~~~~~k~~~~l~~a 223 (363)
T cd03786 146 FAPTEEARRNLLQEG-EPPERIFVVGNTMIDALLRLLELAKKELILELLG-LLPKKYILVTLHRVENVDDGEQLEEILEA 223 (363)
T ss_pred cCCCHHHHHHHHHcC-CCcccEEEECchHHHHHHHHHHhhccchhhhhcc-cCCCCEEEEEeCCccccCChHHHHHHHHH
Confidence 999999999998875 4788999999985 4322211111111 111222 2334556778888764 7999999999
Q ss_pred HHhCC--CceEEEEeCCccHHHHHHHHc-----CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCc
Q 016648 204 MDRLP--EARIAFIGDGPYREELEKMFT-----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 276 (385)
Q Consensus 204 ~~~~~--~~~l~i~G~g~~~~~l~~~~~-----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 276 (385)
++.+. ++.+++.|.+...+.+++... ..++.+.|+...+++..+|+.||++|.+|. ..+.||+++|+|
T Consensus 224 l~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg-----gi~~Ea~~~g~P 298 (363)
T cd03786 224 LAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG-----GIQEEASFLGVP 298 (363)
T ss_pred HHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc-----cHHhhhhhcCCC
Confidence 98874 366666666665666666543 347999998888999999999999999984 357899999999
Q ss_pred EEEecC-CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHH
Q 016648 277 VVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 327 (385)
Q Consensus 277 vI~s~~-~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 327 (385)
+|+++. +...+.+ +.| .+..+. .|++++++++.++++++..+..|.
T Consensus 299 vI~~~~~~~~~~~~---~~g-~~~~~~-~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 299 VLNLRDRTERPETV---ESG-TNVLVG-TDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred EEeeCCCCccchhh---hee-eEEecC-CCHHHHHHHHHHHhcCchhhhcCC
Confidence 999864 3344554 333 223322 379999999999999887766553
No 85
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.87 E-value=6.4e-21 Score=184.43 Aligned_cols=292 Identities=16% Similarity=0.155 Sum_probs=209.7
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
++.++.+..+.. |+|++|+++.+.++.++..+..+.++-+.+|..+|....-....+.. -.-..+-.||.|-+
T Consensus 221 FA~~i~~~~~~g--D~VWVHDYHL~LlP~~LR~~~p~~~IGfFlHiPFPs~Eifr~LP~r~-----elL~glL~aDlIGF 293 (934)
T PLN03064 221 FADVVNEHYEEG--DVVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPSRS-----ELLRSVLAADLVGF 293 (934)
T ss_pred HHHHHHHhcCCC--CEEEEecchhhHHHHHHHHhCCCCcEEEEecCCCCChHHHhhCCcHH-----HHHHHHhcCCeEEe
Confidence 334444444332 89999999888888777666678899999999887643222222211 12224566999999
Q ss_pred cChhHHHHHHHhc----cc-----------CCCcEEEeeCCCCCCCCCCCCCCh---hhHhhhcCCCCCCcEEEEEeecc
Q 016648 131 PSVAIGKDLEAAR----VT-----------AANKIRIWKKGVDSESFHPRFRSS---EMRWRLSNGEPDKPLIVHVGRLG 192 (385)
Q Consensus 131 ~s~~~~~~~~~~~----~~-----------~~~~i~vi~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~G~~~ 192 (385)
.+....+.+.+.. +. ..-++.++|.|||.+.|....... .....+.....++.+|+.+++++
T Consensus 294 qT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~~~~~v~~~~~~lr~~~~g~kiIlgVDRLD 373 (934)
T PLN03064 294 HTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALETPQVQQHIKELKERFAGRKVMLGVDRLD 373 (934)
T ss_pred CCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHhcChhHHHHHHHHHHHhCCceEEEEeeccc
Confidence 9988888776521 10 012366789999998876433222 11112222234677999999999
Q ss_pred ccccHHHHHHHHHhC----CCc--eEEEE-------eCCccHHHHH----HHHcCCC----------eE-EecccChHHH
Q 016648 193 VEKSLDFLKRVMDRL----PEA--RIAFI-------GDGPYREELE----KMFTGMP----------AV-FTGMLLGEEL 244 (385)
Q Consensus 193 ~~k~~~~l~~a~~~~----~~~--~l~i~-------G~g~~~~~l~----~~~~~~~----------i~-~~g~~~~~~~ 244 (385)
..||+...++|++++ |+. +++++ ++++..+.++ +++.+.| |+ +...++.+++
T Consensus 374 ~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv~~~~~~l~~eeL 453 (934)
T PLN03064 374 MIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHAL 453 (934)
T ss_pred cccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceEEEeccCCCHHHH
Confidence 999999999998864 553 25544 3444434433 3222222 43 3445899999
Q ss_pred HHHHHhCcEEEEcCCCCCCcHHHHHHHhcCC----cEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc-C
Q 016648 245 SQAYASGDVFVMPSESETLGLVVLEAMSSGI----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-N 319 (385)
Q Consensus 245 ~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~----PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~-~ 319 (385)
..+|+.||+++++|..||++++..|||+|+. ++|.|...|..+.+ +..+++++|.|.++++++|.+++. +
T Consensus 454 ~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfaGaa~~L-----~~~AllVNP~D~~~vA~AI~~AL~M~ 528 (934)
T PLN03064 454 CALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSL-----GAGAILVNPWNITEVAASIAQALNMP 528 (934)
T ss_pred HHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCCchHHHh-----CCceEEECCCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999954 44558988888877 456899999999999999999998 8
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 016648 320 QELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~ 354 (385)
++++++..++.++.+.++++..+++.+++++.+..
T Consensus 529 ~~Er~~r~~~~~~~V~~~d~~~Wa~~fl~~L~~~~ 563 (934)
T PLN03064 529 EEEREKRHRHNFMHVTTHTAQEWAETFVSELNDTV 563 (934)
T ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999987665543
No 86
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.87 E-value=3.6e-20 Score=156.75 Aligned_cols=182 Identities=37% Similarity=0.559 Sum_probs=138.0
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
....+.+.+++.+||+||++++...........+..++|++++.|+.++........ .........++..
T Consensus 39 ~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~--------~~~~~~~~~~~~~-- 108 (229)
T cd01635 39 LLLLLLRILRGFKPDVVHAHGYYPAPLALLLAARLLGIPLVLTVHGVNRSLLEGVPL--------SLLALSIGLADKV-- 108 (229)
T ss_pred chHHHHHHHhhcCCCEEEEcCCCcHHHHHHHHHhhCCCCEEEEEcCccHhhcccCcH--------HHHHHHHhhcceE--
Confidence 455677777789999999999755554443556778999999999987654332211 0111111222222
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC---
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--- 207 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--- 207 (385)
|+|++.+.||++.+++++..+
T Consensus 109 --------------------------------------------------------~~g~~~~~k~~~~~~~a~~~l~~~ 132 (229)
T cd01635 109 --------------------------------------------------------FVGRLAPEKGLDDLIEAFALLKER 132 (229)
T ss_pred --------------------------------------------------------EEEeecccCCHHHHHHHHHHHHHh
Confidence 999999999999999999877
Q ss_pred -CCceEEEEeCCccHHHHHH----HHcCCCeEEecccCh-HHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 208 -PEARIAFIGDGPYREELEK----MFTGMPAVFTGMLLG-EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 208 -~~~~l~i~G~g~~~~~l~~----~~~~~~i~~~g~~~~-~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
++++++++|.+........ .....++.+.|+++. +++..+++.||++++|+..|++|++++|||++|+|+|+|+
T Consensus 133 ~~~~~~~i~G~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~ 212 (229)
T cd01635 133 GPDLKLVIAGDGPEREYLEELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMACGLPVIATD 212 (229)
T ss_pred CCCeEEEEEeCCCChHHHHHHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEecccccCcChHHHHHHhCCCCEEEcC
Confidence 3899999998877665543 222347999999854 5666666669999999999999999999999999999999
Q ss_pred CCCCCcccccCCCCCeeEee
Q 016648 282 AGGIPDIIPEDQDGKIGYLF 301 (385)
Q Consensus 282 ~~~~~e~~~~~~~~~~g~~~ 301 (385)
.++..|.+ .++.+|+++
T Consensus 213 ~~~~~e~i---~~~~~g~~~ 229 (229)
T cd01635 213 VGGPPEIV---EDGLTGLLV 229 (229)
T ss_pred CCCcceEE---ECCCceEEC
Confidence 99999988 778888764
No 87
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.87 E-value=4.1e-20 Score=168.87 Aligned_cols=267 Identities=15% Similarity=0.137 Sum_probs=173.4
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
....++.+++++.+||+||+++...........++..++|+++..+... + .+... ..+.+.+.+|.++
T Consensus 72 ~~~~~~~~~l~~~kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~~~~~~--~------~~~~~----~~~~~~~~~d~i~ 139 (380)
T PRK00025 72 KIRRRLKRRLLAEPPDVFIGIDAPDFNLRLEKKLRKAGIPTIHYVSPSV--W------AWRQG----RAFKIAKATDHVL 139 (380)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHCCCCEEEEeCCch--h------hcCch----HHHHHHHHHhhhe
Confidence 3456788899999999999987422222222345667999987644310 0 01111 2233578899999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEE-EEEeec-ccc-ccHHHHHHHHHh
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLI-VHVGRL-GVE-KSLDFLKRVMDR 206 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~G~~-~~~-k~~~~l~~a~~~ 206 (385)
+.|+...+.+.+.+. ++.+++|++...... .......+.++.. +++.+++ ++.|+- ... +.++.++++++.
T Consensus 140 ~~~~~~~~~~~~~g~----~~~~~G~p~~~~~~~-~~~~~~~~~~l~~-~~~~~~il~~~gsr~~~~~~~~~~l~~a~~~ 213 (380)
T PRK00025 140 ALFPFEAAFYDKLGV----PVTFVGHPLADAIPL-LPDRAAARARLGL-DPDARVLALLPGSRGQEIKRLLPPFLKAAQL 213 (380)
T ss_pred eCCccCHHHHHhcCC----CeEEECcCHHHhccc-ccChHHHHHHcCC-CCCCCEEEEECCCCHHHHHHHHHHHHHHHHH
Confidence 999999988877542 366666665433211 1112233333332 3345554 455533 232 446788887765
Q ss_pred C----CCceEEEEeC-CccHHHHHHHHcCC---CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 207 L----PEARIAFIGD-GPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 207 ~----~~~~l~i~G~-g~~~~~l~~~~~~~---~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
+ ++++++++|. +...+.+++...+. ++.+. .+++..+|+.||++|.+| |.+++|||++|+|+|
T Consensus 214 l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~----~~~~~~~~~~aDl~v~~s-----G~~~lEa~a~G~PvI 284 (380)
T PRK00025 214 LQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLL----DGQKREAMAAADAALAAS-----GTVTLELALLKVPMV 284 (380)
T ss_pred HHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEE----cccHHHHHHhCCEEEECc-----cHHHHHHHHhCCCEE
Confidence 4 6788888875 55566677666543 34332 258999999999999987 788889999999999
Q ss_pred Ee-----------------cCCCCCcccccCCCC--CeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCH
Q 016648 279 GV-----------------RAGGIPDIIPEDQDG--KIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDW 339 (385)
Q Consensus 279 ~s-----------------~~~~~~e~~~~~~~~--~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~ 339 (385)
++ +.++.++++ .++ ..+++.+..|++++++++.++++|++.+++|++++.+..+.. -
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-~ 360 (380)
T PRK00025 285 VGYKVSPLTFWIAKRLVKVPYVSLPNLL---AGRELVPELLQEEATPEKLARALLPLLADGARRQALLEGFTELHQQL-R 360 (380)
T ss_pred EEEccCHHHHHHHHHHHcCCeeehHHHh---cCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-C
Confidence 87 334445665 333 345666777999999999999999999999999886665443 2
Q ss_pred HHHHHHHH
Q 016648 340 RAATRTIR 347 (385)
Q Consensus 340 ~~~~~~~~ 347 (385)
...++++.
T Consensus 361 ~~a~~~~~ 368 (380)
T PRK00025 361 CGADERAA 368 (380)
T ss_pred CCHHHHHH
Confidence 22344444
No 88
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.85 E-value=1.1e-19 Score=162.27 Aligned_cols=283 Identities=19% Similarity=0.215 Sum_probs=199.4
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHHhC----CCEEEEEecCCCccccc--ccccccchhHHHHHHHHHHhCCeEEEcChhH
Q 016648 62 FKPDIIHASSPGIMVFGALIIAKLLC----VPIVMSYHTHVPVYIPR--YTFSWLVKPMWLVIKFLHRAADLTLVPSVAI 135 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~~~~----~p~v~~~h~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 135 (385)
++.|.|++... .....+.....+ ..+.++.|......... ....+....+.+++......+|.+++.|...
T Consensus 144 ~~~d~~i~d~~---~~~~~l~~~~~~p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~ 220 (495)
T KOG0853|consen 144 EKVDPIIEDFV---SACVPLLKQLSGPDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFT 220 (495)
T ss_pred hhhceeecchH---HHHHHHHHHhcCCcccceeEEeccchHHHhccccCccceeehhhhhhhhhhhhhccceEecchhhh
Confidence 56677777653 222222333332 44556666643333222 1223333445556777788999999999999
Q ss_pred HHHHHHhcc-cCCCcEEEeeCCCCCCCCCCCCCChhhHhh----hcCCC-CCCcEEEEEeeccccccHHHHHHHHHhC--
Q 016648 136 GKDLEAARV-TAANKIRIWKKGVDSESFHPRFRSSEMRWR----LSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMDRL-- 207 (385)
Q Consensus 136 ~~~~~~~~~-~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~----~~~~~-~~~~~i~~~G~~~~~k~~~~l~~a~~~~-- 207 (385)
+..+..... ....++.+.+.++|.+.+.+.........+ ..... .....+.-+.++.+.||++.+++++..+
T Consensus 221 ~~~f~~~~~~L~~~d~~~~y~ei~~s~~~~~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~ 300 (495)
T KOG0853|consen 221 KRQFKATFVSLSNSDITSTYPEIDGSWFTYGQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHD 300 (495)
T ss_pred hhhhhhhhhhcCCCCcceeeccccchhccccccccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhc
Confidence 999887765 333447888888887766542111111101 11111 2255677788899999999999998765
Q ss_pred -------CCceEEEEeCC-------c---cHHHHHHHHcCC-----CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcH
Q 016648 208 -------PEARIAFIGDG-------P---YREELEKMFTGM-----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGL 265 (385)
Q Consensus 208 -------~~~~l~i~G~g-------~---~~~~l~~~~~~~-----~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~ 265 (385)
++.++.+.|+. + +.+++.+++++. .+.++...++.+-..+++.+.+++.....|.||.
T Consensus 301 ~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGi 380 (495)
T KOG0853|consen 301 SIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGI 380 (495)
T ss_pred ccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccc
Confidence 24567777722 1 234555555544 3667788877777888888888776555599999
Q ss_pred HHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHH---HHHHHHhHhhcCHHHHHHHHHHHHHHHHh-CCHHH
Q 016648 266 VVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLD---DCLSKLEPLLYNQELRETMGQAARQEMEK-YDWRA 341 (385)
Q Consensus 266 ~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~---~l~~~i~~ll~~~~~~~~~~~~a~~~~~~-~s~~~ 341 (385)
+++|||+||+|||+++.||..|++ .++.+|+++++ +.+ .+++++.++..|++.+.+|++++++.+++ |+|+.
T Consensus 381 v~IEAMa~glPvvAt~~GGP~EiV---~~~~tG~l~dp-~~e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~fs~~~ 456 (495)
T KOG0853|consen 381 VPIEAMACGLPVVATNNGGPAEIV---VHGVTGLLIDP-GQEAVAELADALLKLRRDPELWARMGKNGLKRVKEMFSWQH 456 (495)
T ss_pred eeHHHHhcCCCEEEecCCCceEEE---EcCCcceeeCC-chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999999999999 99999999999 656 69999999999999999999999999965 99988
Q ss_pred HHHHHHHHHHH
Q 016648 342 ATRTIRNEQYN 352 (385)
Q Consensus 342 ~~~~~~~~iy~ 352 (385)
+.+++.+ +..
T Consensus 457 ~~~ri~~-~~~ 466 (495)
T KOG0853|consen 457 YSERIAS-VLG 466 (495)
T ss_pred HHHHHHH-HhH
Confidence 8888863 444
No 89
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=1.7e-18 Score=156.36 Aligned_cols=285 Identities=38% Similarity=0.577 Sum_probs=202.9
Q ss_pred HHhhccC-CCEEEeCCCchhH--HHHHHHHHHhCCCEEEEEecCCCcccccccccccch----hHHHHHHHHHHhCCeEE
Q 016648 57 SEVARFK-PDIIHASSPGIMV--FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVK----PMWLVIKFLHRAADLTL 129 (385)
Q Consensus 57 ~~i~~~~-pDiI~~~~~~~~~--~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ad~ii 129 (385)
....... +|+++.+...... ..........+.+.+...|................. ............++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (381)
T COG0438 76 LLLKRLLPYDIIHAHSLLLAPGGLLALLLLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVI 155 (381)
T ss_pred HHhccccccceeeccccccccchhHHHhhccccCCcEEEeecCCcccccccccchhhHHHHHHHHHHHHHhccccccEEE
Confidence 3333344 5999988653332 123334455677888888886542211111110000 01111111112478889
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCC-CcEEEEEeeccccccHHHHHHHHHhCC
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPD-KPLIVHVGRLGVEKSLDFLKRVMDRLP 208 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~G~~~~~k~~~~l~~a~~~~~ 208 (385)
+.+......+..... ..++.+++++++.+.+..... ...... ...++++|++.+.||++.++++++.++
T Consensus 156 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~ 225 (381)
T COG0438 156 AVSPALKELLEALGV--PNKIVVIPNGIDTEKFAPARI--------GLLPEGGKFVVLYVGRLDPEKGLDLLIEAAAKLK 225 (381)
T ss_pred ECCHHHHHHHHHhCC--CCCceEecCCcCHHHcCcccc--------CCCcccCceEEEEeeccChhcCHHHHHHHHHHhh
Confidence 998888676666653 337889999999887664200 011112 378999999999999999999999884
Q ss_pred C----ceEEEEeCCccH-HHHHHHHc----CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 209 E----ARIAFIGDGPYR-EELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 209 ~----~~l~i~G~g~~~-~~l~~~~~----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
+ ..+.++|.+... +.+..... ..++.+.|.++.+++..+++.||++++|+..|++|.+++|||++|+|||+
T Consensus 226 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~ 305 (381)
T COG0438 226 KRGPDIKLVIVGDGPERREELEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSLSEGFGLVLLEAMAAGTPVIA 305 (381)
T ss_pred hhcCCeEEEEEcCCCccHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccccccchHHHHHHHhcCCcEEE
Confidence 3 789999988752 33333333 34689999999888999999999999999999999999999999999999
Q ss_pred ecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Q 016648 280 VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 280 s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~~~ 355 (385)
++.++..+.+ .++.+|+++...+.+++++++..++++++.++.+.+.+++.+ +.|+|+..++.+. .++....
T Consensus 306 ~~~~~~~e~~---~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 378 (381)
T COG0438 306 SDVGGIPEVV---EDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFSWERIAEQLL-ELYEELL 378 (381)
T ss_pred CCCCChHHHh---cCCCceEecCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHH
Confidence 9999999999 666668777776899999999999999877788887666665 5799999999886 5776654
No 90
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.85 E-value=6.6e-19 Score=146.90 Aligned_cols=283 Identities=15% Similarity=0.229 Sum_probs=204.0
Q ss_pred HHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCc--ccc-------cccccccchhHHH----HHHHHH
Q 016648 56 ISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPV--YIP-------RYTFSWLVKPMWL----VIKFLH 122 (385)
Q Consensus 56 ~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~--~~~-------~~~~~~~~~~~~~----~~~~~~ 122 (385)
...+-+..|||.+-....++.++. .++..++|++..+|-..-. ... .....|..-.+++ +++.+-
T Consensus 143 ~Eai~r~~Pdi~IDtMGY~fs~p~--~r~l~~~~V~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~~G 220 (465)
T KOG1387|consen 143 FEAIIRFPPDIFIDTMGYPFSYPI--FRRLRRIPVVAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQSAG 220 (465)
T ss_pred HHHHHhCCchheEecCCCcchhHH--HHHHccCceEEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 345567899998877654555543 3457899999988863211 110 0011122222222 334444
Q ss_pred HhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHH
Q 016648 123 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 202 (385)
Q Consensus 123 ~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 202 (385)
.+||.+.+.|.++.+.+.+.... .++.+++.+.+.+.+... .....++.+.++++|.+.++|+.. +++
T Consensus 221 ~~ad~vm~NssWT~nHI~qiW~~--~~~~iVyPPC~~e~lks~---------~~te~~r~~~ll~l~Q~RPEKnH~-~Lq 288 (465)
T KOG1387|consen 221 SKADIVMTNSSWTNNHIKQIWQS--NTCSIVYPPCSTEDLKSK---------FGTEGERENQLLSLAQFRPEKNHK-ILQ 288 (465)
T ss_pred ccceEEEecchhhHHHHHHHhhc--cceeEEcCCCCHHHHHHH---------hcccCCcceEEEEEeecCcccccH-HHH
Confidence 67999999999999999998863 577777777766533221 111234567899999999999988 444
Q ss_pred HHHh----C------CCceEEEEeCC---ccHHHHHH---HHcC----CCeEEecccChHHHHHHHHhCcEEEEcCCCCC
Q 016648 203 VMDR----L------PEARIAFIGDG---PYREELEK---MFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESET 262 (385)
Q Consensus 203 a~~~----~------~~~~l~i~G~g---~~~~~l~~---~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~ 262 (385)
...- . +++++.++|+. ++.+.++. ++.+ .++.|.-.+|.+++..++..|.+.|.....|.
T Consensus 289 l~Al~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~MwNEH 368 (465)
T KOG1387|consen 289 LFALYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMWNEH 368 (465)
T ss_pred HHHHHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhhhhh
Confidence 3321 1 46899999943 23333333 3332 26999999999999999999999999999999
Q ss_pred CcHHHHHHHhcCCcEEEecCCC-CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc-CHHHHHHHHHHHHHHHHhCCHH
Q 016648 263 LGLVVLEAMSSGIPVVGVRAGG-IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWR 340 (385)
Q Consensus 263 ~~~~~~Ea~a~G~PvI~s~~~~-~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~a~~~~~~~s~~ 340 (385)
||..+.||||+|+-+|+.+.|| .-+++.+.....+|++.. +.++.++++.+++. |++++..++.+||+.+.+|+-.
T Consensus 369 FGIsVVEyMAAGlIpi~h~SgGP~lDIV~~~~G~~tGFla~--t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~~RFsE~ 446 (465)
T KOG1387|consen 369 FGISVVEYMAAGLIPIVHNSGGPLLDIVTPWDGETTGFLAP--TDEEYAEAILKIVKLNYDERNMMRRNARKSLARFGEL 446 (465)
T ss_pred cchhHHHHHhcCceEEEeCCCCCceeeeeccCCccceeecC--ChHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhhHH
Confidence 9999999999998777776654 457776655667899875 88999999999987 7788999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 016648 341 AATRTIRNEQYNAAI 355 (385)
Q Consensus 341 ~~~~~~~~~iy~~~~ 355 (385)
...+.+. ..+..++
T Consensus 447 ~F~kd~~-~~i~kll 460 (465)
T KOG1387|consen 447 KFDKDWE-NPICKLL 460 (465)
T ss_pred HHHHhHh-HHHHHhh
Confidence 9988886 4555555
No 91
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3e-18 Score=143.06 Aligned_cols=282 Identities=18% Similarity=0.242 Sum_probs=208.6
Q ss_pred HHhhccCCCEEEeCCCchh--HHHHHHHHHHhCCCEEEEEecCCCc---ccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 57 SEVARFKPDIIHASSPGIM--VFGALIIAKLLCVPIVMSYHTHVPV---YIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 57 ~~i~~~~pDiI~~~~~~~~--~~~~~~~~~~~~~p~v~~~h~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
.++....+|+|.+++|... ...+.++....|.+++++.|+.... .........+.+..++.++.+-+.||.-+|+
T Consensus 97 aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ysl~l~~~~g~~h~lV~l~~~~E~~fgk~a~~nLcV 176 (444)
T KOG2941|consen 97 ALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYSLQLKLKLGFQHPLVRLVRWLEKYFGKLADYNLCV 176 (444)
T ss_pred HHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHHHHHHhhcCCCCchHHHHHHHHHHhhcccccchhh
Confidence 3444678999999998443 3445566788999999999996543 1122333556677788999999999999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCC-----CC----CCCCCC-----------Chh-----hHhhh-----cCCCCC
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDS-----ES----FHPRFR-----------SSE-----MRWRL-----SNGEPD 181 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~-----~~----~~~~~~-----------~~~-----~~~~~-----~~~~~~ 181 (385)
++.|++.+.+..++. +..+++.-... +. |.+... ... ...+. ....+.
T Consensus 177 T~AMr~dL~qnWgi~--ra~v~YDrPps~~~~l~~~H~lf~~l~~d~~~f~ar~~q~~~~~~taf~~k~~s~~v~~~~~~ 254 (444)
T KOG2941|consen 177 TKAMREDLIQNWGIN--RAKVLYDRPPSKPTPLDEQHELFMKLAGDHSPFRAREPQDKALERTAFTKKDASGDVQLLPER 254 (444)
T ss_pred HHHHHHHHHHhcCCc--eeEEEecCCCCCCCchhHHHHHHhhhccccchhhhcccccchhhhhhHhhhcccchhhhccCC
Confidence 999999999988743 44555432221 00 111000 000 00010 111234
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhC-----------CCceEEEEeCCccHHHHHHHHcCCC---e-EEecccChHHHHH
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRL-----------PEARIAFIGDGPYREELEKMFTGMP---A-VFTGMLLGEELSQ 246 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~-----------~~~~l~i~G~g~~~~~l~~~~~~~~---i-~~~g~~~~~~~~~ 246 (385)
..+++...++.+..++..+++|+..+ |..-++|.|.|+..+...+.+.+.+ | ....++..||.+.
T Consensus 255 pallvsSTswTpDEdf~ILL~AL~~y~~~~~~~~~~lP~llciITGKGPlkE~Y~~~I~~~~~~~v~~~tpWL~aEDYP~ 334 (444)
T KOG2941|consen 255 PALLVSSTSWTPDEDFGILLEALVIYEEQLYDKTHNLPSLLCIITGKGPLKEKYSQEIHEKNLQHVQVCTPWLEAEDYPK 334 (444)
T ss_pred CeEEEecCCCCCcccHHHHHHHHHhhhhhhhhccCCCCcEEEEEcCCCchhHHHHHHHHHhcccceeeeecccccccchh
Confidence 45677777889999999999999733 6778899999999999988888764 3 3477888899999
Q ss_pred HHHhCcEEEEcCC---CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc----C
Q 016648 247 AYASGDVFVMPSE---SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY----N 319 (385)
Q Consensus 247 ~~~~adi~v~ps~---~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~----~ 319 (385)
+++.||+.|+... .--.|+++++...||+||++-+.....|++ ++++||++++ |.+++++.+..+++ |
T Consensus 335 ll~saDlGVcLHtSSSGLDLPMKVVDMFGcglPvcA~~fkcl~ELV---kh~eNGlvF~--Ds~eLa~ql~~lf~~fp~~ 409 (444)
T KOG2941|consen 335 LLASADLGVCLHTSSSGLDLPMKVVDMFGCGLPVCAVNFKCLDELV---KHGENGLVFE--DSEELAEQLQMLFKNFPDN 409 (444)
T ss_pred HhhccccceEeeecCcccCcchhHHHhhcCCCceeeecchhHHHHH---hcCCCceEec--cHHHHHHHHHHHHhcCCCC
Confidence 9999999876422 335799999999999999999999999999 9999999998 99999999999998 7
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 016648 320 QELRETMGQAARQEMEKYDWRAATRTI 346 (385)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~s~~~~~~~~ 346 (385)
.++.....+++++. ++..|+..-++.
T Consensus 410 a~~l~~lkkn~~e~-~e~RW~~~W~~~ 435 (444)
T KOG2941|consen 410 ADELNQLKKNLREE-QELRWDESWERT 435 (444)
T ss_pred HHHHHHHHHhhHHH-HhhhHHHHHHHh
Confidence 88888888888877 446665544443
No 92
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=99.79 E-value=4.7e-17 Score=153.02 Aligned_cols=286 Identities=17% Similarity=0.167 Sum_probs=201.5
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHH-------------hCCCEEEEEecCCCcccccccccccch----------------
Q 016648 62 FKPDIIHASSPGIMVFGALIIAKL-------------LCVPIVMSYHTHVPVYIPRYTFSWLVK---------------- 112 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~~-------------~~~p~v~~~h~~~~~~~~~~~~~~~~~---------------- 112 (385)
.+||+||+|++++...+..+.... .+..+++|+|+..+.....+......+
T Consensus 160 ~~pdviH~ND~Htal~~~el~r~l~~~~~~~~~a~~~~~~~~vfTiHt~~~qG~e~f~~~~~~~~~~~~~~~~gl~~~~~ 239 (601)
T TIGR02094 160 IDPDVYHLNEGHAAFVTLERIRELIAQGLSFEEAWEAVRKSSLFTTHTPVPAGHDVFPEDLMRKYFGDYAANLGLPREQL 239 (601)
T ss_pred CCceEEEeCCchHHHHHHHHHHHHHHcCCCHHHHHHhcCCeEEEeCCCchHHHhhhcCHHHHHHHhhhhhhHhCCCHHHH
Confidence 599999999986655444432111 146789999997665421111111100
Q ss_pred -----------hHHHHHHHHHHhCCeEEEcChhHHHHHHHhcc-------cCCCcEEEeeCCCCCCCCCCCCCC------
Q 016648 113 -----------PMWLVIKFLHRAADLTLVPSVAIGKDLEAARV-------TAANKIRIWKKGVDSESFHPRFRS------ 168 (385)
Q Consensus 113 -----------~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~-------~~~~~i~vi~~~v~~~~~~~~~~~------ 168 (385)
..-.+.+..+..||.|.++|+...+..+.... ....++.-|-||||...+.+....
T Consensus 240 ~~~~~~~~~~~~~vnm~~lai~~S~~vngVS~lh~~v~~~l~~~l~~~~~~~~~~i~gItNGId~~~W~~~~~~~l~~~y 319 (601)
T TIGR02094 240 LALGRENPDDPEPFNMTVLALRLSRIANGVSKLHGEVSRKMWQFLYPGYEEEEVPIGYVTNGVHNPTWVAPELRDLYERY 319 (601)
T ss_pred HhhhhhccCccCceeHHHHHHHhCCeeeeecHHHHHHHHHHHHhhhhhcccccCCccceeCCccccccCCHHHHHHHHHh
Confidence 00135677788999999999988885544332 113457888999999877652210
Q ss_pred ---h-----------------------hh----HhhhcC--------------------------CCCCCcEEEEEeecc
Q 016648 169 ---S-----------------------EM----RWRLSN--------------------------GEPDKPLIVHVGRLG 192 (385)
Q Consensus 169 ---~-----------------------~~----~~~~~~--------------------------~~~~~~~i~~~G~~~ 192 (385)
. +. +.++.. ..++.+++++++|+.
T Consensus 320 ~~~~w~~~~~~~~~~~~~~~~~~~~l~~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~gl~~dpd~~~ig~v~Rl~ 399 (601)
T TIGR02094 320 LGENWRELLADEELWEAIDDIPDEELWEVHLKLKARLIDYIRRRLRERWLRRGADAAILMATDRFLDPDVLTIGFARRFA 399 (601)
T ss_pred CCcchhccchhhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcchhhhhhccccCCCCcEEEEEEcch
Confidence 0 00 001100 245678999999999
Q ss_pred ccccHHHHHHHHHhC--------CCceEEEEeCCc--------cHHHHHHHHcC--C--CeEEecccChHHHHHHHHhCc
Q 016648 193 VEKSLDFLKRVMDRL--------PEARIAFIGDGP--------YREELEKMFTG--M--PAVFTGMLLGEELSQAYASGD 252 (385)
Q Consensus 193 ~~k~~~~l~~a~~~~--------~~~~l~i~G~g~--------~~~~l~~~~~~--~--~i~~~g~~~~~~~~~~~~~ad 252 (385)
..||.++++.++.++ .++++++.|.+. ..+.+..+..+ . +|.|+...+..-...+++.||
T Consensus 400 ~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~D 479 (601)
T TIGR02094 400 TYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVD 479 (601)
T ss_pred hhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhhe
Confidence 999999988887665 368999999765 34445555544 2 677777776667778899999
Q ss_pred EEEE-cCC-CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCC------------CCHHHHHHHHhHhh-
Q 016648 253 VFVM-PSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP------------GDLDDCLSKLEPLL- 317 (385)
Q Consensus 253 i~v~-ps~-~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~------------~~~~~l~~~i~~ll- 317 (385)
+.++ ||+ .|++|++=+-||..|.+.+++-.|...|.. ++.+|+.+.. .|+++|.++|++.+
T Consensus 480 v~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~----~~~nGf~f~~~~~~~~~~~~d~~da~~l~~~L~~ai~ 555 (601)
T TIGR02094 480 VWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGY----DGDNGWAIGDGEEYDDEEEQDRLDAEALYDLLENEVI 555 (601)
T ss_pred eEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccC----CCCcEEEECCCccccccccccCCCHHHHHHHHHHHHH
Confidence 9999 999 999999999999999999999888777765 4679999983 79999999997755
Q ss_pred ----cC-----HHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHH
Q 016648 318 ----YN-----QELRETMGQAARQEM-EKYDWRAATRTIRNEQY 351 (385)
Q Consensus 318 ----~~-----~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy 351 (385)
++ |..+.++.+++.+.. ..|||++++++|.+..|
T Consensus 556 ~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~yy 599 (601)
T TIGR02094 556 PLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKFY 599 (601)
T ss_pred HHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHhC
Confidence 23 445677777777664 57999999999986444
No 93
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.78 E-value=7.1e-19 Score=136.07 Aligned_cols=127 Identities=32% Similarity=0.551 Sum_probs=93.5
Q ss_pred cEEEEEeeccccccHHHHHH-HHHhC----CCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEc
Q 016648 183 PLIVHVGRLGVEKSLDFLKR-VMDRL----PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 257 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~-a~~~~----~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~p 257 (385)
++++++|++...|+++.+++ +++++ |++++.|+|.++. +++++ ...+|+++|++ +++.++++.||+++.|
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~~--~l~~~-~~~~v~~~g~~--~e~~~~l~~~dv~l~p 77 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGPD--ELKRL-RRPNVRFHGFV--EELPEILAAADVGLIP 77 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS---HHCCH-HHCTEEEE-S---HHHHHHHHC-SEEEE-
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCHH--HHHHh-cCCCEEEcCCH--HHHHHHHHhCCEEEEE
Confidence 57899999999999999999 76554 7999999998765 35555 34599999999 7999999999999999
Q ss_pred CC-CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 258 SE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 258 s~-~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
+. .+++|++++|||++|+|||+++. +..++. .....|.++ .+|+++++++|.++++|
T Consensus 78 ~~~~~~~~~k~~e~~~~G~pvi~~~~-~~~~~~---~~~~~~~~~-~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 78 SRFNEGFPNKLLEAMAAGKPVIASDN-GAEGIV---EEDGCGVLV-ANDPEELAEAIERLLND 135 (135)
T ss_dssp BSS-SCC-HHHHHHHCTT--EEEEHH-HCHCHS------SEEEE--TT-HHHHHHHHHHHHH-
T ss_pred eeCCCcCcHHHHHHHHhCCCEEECCc-chhhhe---eecCCeEEE-CCCHHHHHHHHHHHhcC
Confidence 86 67899999999999999999998 566666 445677676 78999999999999865
No 94
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.74 E-value=4e-16 Score=141.49 Aligned_cols=259 Identities=15% Similarity=0.112 Sum_probs=162.7
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
....++.+++++++||+|++.+...+.+.....++..|+|+++.+. |... .|... ..+.+.+.+|.++
T Consensus 76 ~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~---P~~w-----aw~~~----~~r~l~~~~d~v~ 143 (385)
T TIGR00215 76 KIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS---PQVW-----AWRKW----RAKKIEKATDFLL 143 (385)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC---CcHh-----hcCcc----hHHHHHHHHhHhh
Confidence 3455777889999999999998644444444467888999986431 2211 11111 2567788999999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEE-e-eccc-cccHHHHHHHHHh
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHV-G-RLGV-EKSLDFLKRVMDR 206 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-G-~~~~-~k~~~~l~~a~~~ 206 (385)
+.++...+.+.+.+ .+..++.|++..............+.++.. +++.++++.+ | +..+ .|++..++++++.
T Consensus 144 ~~~~~e~~~~~~~g----~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl-~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~ 218 (385)
T TIGR00215 144 AILPFEKAFYQKKN----VPCRFVGHPLLDAIPLYKPDRKSAREKLGI-DHNGETLALLPGSRGSEVEKLFPLFLKAAQL 218 (385)
T ss_pred ccCCCcHHHHHhcC----CCEEEECCchhhhccccCCCHHHHHHHcCC-CCCCCEEEEECCCCHHHHHHhHHHHHHHHHH
Confidence 99999998887643 256678888743322111122223333333 3455666544 4 4444 5788888888766
Q ss_pred C----CCceEEEEe-CCccHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcE
Q 016648 207 L----PEARIAFIG-DGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 277 (385)
Q Consensus 207 ~----~~~~l~i~G-~g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 277 (385)
+ |+.++++.+ .+...+.+++.... ..+.+.+ .++..+|+.||++|.+| |.+++|+|++|+|+
T Consensus 219 l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~l~aADl~V~~S-----Gt~tlEa~a~G~P~ 289 (385)
T TIGR00215 219 LEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLID----GDARKAMFAADAALLAS-----GTAALEAALIKTPM 289 (385)
T ss_pred HHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEEC----chHHHHHHhCCEEeecC-----CHHHHHHHHcCCCE
Confidence 5 567776654 44444444444332 2344433 35678999999999999 77778999999999
Q ss_pred EEec-CCC----------------CCcccccCCCCCe--eEeeCCCCHHHHHHHHhHhhcCH----HHHHHHHHHHHHHH
Q 016648 278 VGVR-AGG----------------IPDIIPEDQDGKI--GYLFNPGDLDDCLSKLEPLLYNQ----ELRETMGQAARQEM 334 (385)
Q Consensus 278 I~s~-~~~----------------~~e~~~~~~~~~~--g~~~~~~~~~~l~~~i~~ll~~~----~~~~~~~~~a~~~~ 334 (385)
|... .+. ++.++ .+... -++-+.-+++.+++.+.++++|+ +.++++.+.-.+..
T Consensus 290 Vv~yk~~pl~~~~~~~~~~~~~~~~~nil---~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 290 VVGYRMKPLTFLIARRLVKTDYISLPNIL---ANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred EEEEcCCHHHHHHHHHHHcCCeeeccHHh---cCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 8762 111 12222 11111 11222347899999999999999 87777777666555
Q ss_pred HhC
Q 016648 335 EKY 337 (385)
Q Consensus 335 ~~~ 337 (385)
++.
T Consensus 367 ~~l 369 (385)
T TIGR00215 367 QRI 369 (385)
T ss_pred HHh
Confidence 544
No 95
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=99.73 E-value=4.5e-16 Score=144.74 Aligned_cols=204 Identities=17% Similarity=0.138 Sum_probs=159.3
Q ss_pred HHHhCCeEEEcChhHHHHHHHhccc--CCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEe--ecccccc
Q 016648 121 LHRAADLTLVPSVAIGKDLEAARVT--AANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG--RLGVEKS 196 (385)
Q Consensus 121 ~~~~ad~ii~~s~~~~~~~~~~~~~--~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G--~~~~~k~ 196 (385)
.+..+|.+|+.++...+.+...+.. ...++..||.+.- ... +.. ....+..+++++ |+ +.|.
T Consensus 269 ~~~~~d~iIv~T~~q~~~l~~~~~~~~~~~~v~~Ip~~~~-~~~-~~~-----------s~r~~~~~I~v~idrL-~ek~ 334 (519)
T TIGR03713 269 SLSRADLIIVDREDIERLLEENYRENYVEFDISRITPFDT-RLR-LGQ-----------SQQLYETEIGFWIDGL-SDEE 334 (519)
T ss_pred ChhhcCeEEEcCHHHHHHHHHHhhhcccCCcceeeCccce-EEe-cCh-----------hhcccceEEEEEcCCC-ChHH
Confidence 3578999999998888877766541 1134556664433 111 110 112334688888 99 9999
Q ss_pred HHHHHHHHHhC----CCceEEEEeCCccH---HHHH----HHHcC-----------------------------CCeEEe
Q 016648 197 LDFLKRVMDRL----PEARIAFIGDGPYR---EELE----KMFTG-----------------------------MPAVFT 236 (385)
Q Consensus 197 ~~~l~~a~~~~----~~~~l~i~G~g~~~---~~l~----~~~~~-----------------------------~~i~~~ 236 (385)
++.+++++.++ |+++|.+.|.+... +.++ ++..+ ..|.+.
T Consensus 335 ~~~~I~av~~~~~~~p~~~L~~~gy~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~f~ 414 (519)
T TIGR03713 335 LQQILQQLLQYILKNPDYELKILTYNNDNDITQLLEDILEQINEEYNQDKNFFSLSEQDENQPILQTDEEQKEKERIAFT 414 (519)
T ss_pred HHHHHHHHHHHHhhCCCeEEEEEEecCchhHHHHHHHHHHHHHhhhchhhhccccchhhhhhhcccchhhcccccEEEEE
Confidence 99888877654 89999999965432 3332 22112 468899
Q ss_pred cccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHh
Q 016648 237 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 237 g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~l 316 (385)
|+.+..++.+.|+.+.++|.+|..|+++ +.+||+++|+|+| .-+..+++ .++.||+++ +|.++|++++..+
T Consensus 415 gy~~e~dl~~~~~~arl~id~s~~eg~~-~~ieAiS~GiPqI---nyg~~~~V---~d~~NG~li--~d~~~l~~al~~~ 485 (519)
T TIGR03713 415 TLTNEEDLISALDKLRLIIDLSKEPDLY-TQISGISAGIPQI---NKVETDYV---EHNKNGYII--DDISELLKALDYY 485 (519)
T ss_pred ecCCHHHHHHHHhhheEEEECCCCCChH-HHHHHHHcCCCee---ecCCceee---EcCCCcEEe--CCHHHHHHHHHHH
Confidence 9997779999999999999999999999 9999999999999 33458899 899999999 5999999999999
Q ss_pred hcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 317 LYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
+.+++.++.+...+.+.+++||-+++.+++.
T Consensus 486 L~~~~~wn~~~~~sy~~~~~yS~~~i~~kW~ 516 (519)
T TIGR03713 486 LDNLKNWNYSLAYSIKLIDDYSSENIIERLN 516 (519)
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999885
No 96
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=99.71 E-value=2.8e-16 Score=143.84 Aligned_cols=278 Identities=19% Similarity=0.215 Sum_probs=168.3
Q ss_pred CCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHHHh
Q 016648 63 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 142 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 142 (385)
.-|+|++|++..+.++.++..+..+.++.+.+|..+|....-....+. . -.-..+-.||.|-+.+....+.+...
T Consensus 141 ~~D~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~e~fr~lP~r----~-eiL~glL~aDlIgFqt~~~~~nFl~~ 215 (474)
T PF00982_consen 141 PGDLVWVHDYHLMLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPWR----E-EILRGLLGADLIGFQTFEYARNFLSC 215 (474)
T ss_dssp TT-EEEEESGGGTTHHHHHHHTT--SEEEEEE-S----HHHHTTSTTH----H-HHHHHHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCcHHHHHHHHHhhcCCceEeeEEecCCCCHHHHhhCCcH----H-HHHHHhhcCCEEEEecHHHHHHHHHH
Confidence 449999999988888887766667889999999988764322221211 1 12224567999999999888877544
Q ss_pred c----cc--CC-----------CcEEEeeCCCCCCCCCCCCC---ChhhHhhhcCCCCC-CcEEEEEeeccccccHHHHH
Q 016648 143 R----VT--AA-----------NKIRIWKKGVDSESFHPRFR---SSEMRWRLSNGEPD-KPLIVHVGRLGVEKSLDFLK 201 (385)
Q Consensus 143 ~----~~--~~-----------~~i~vi~~~v~~~~~~~~~~---~~~~~~~~~~~~~~-~~~i~~~G~~~~~k~~~~l~ 201 (385)
. +. .. -++.+.|-|+|++.+..... ..+...++.....+ ..+|+-+.+++..||+..=+
T Consensus 216 ~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~~~~v~~~~~~l~~~~~~~~~ii~gvDrld~~kGi~~kl 295 (474)
T PF00982_consen 216 CKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLARSPEVQERAEELREKFKGKRKIIVGVDRLDYTKGIPEKL 295 (474)
T ss_dssp HHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-S---HHHHHHHHHTTT-SEEEEEE--B-GGG-HHHHH
T ss_pred HHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhccChHHHHHHHHHHHhcCCCcEEEEEeccchhhcCHHHHH
Confidence 2 10 11 13667888888876643211 11111222222334 48899999999999999888
Q ss_pred HHHHhC----C----CceEEEEeC-----Cc----cHHHHHHHHcC-------C---CeE-EecccChHHHHHHHHhCcE
Q 016648 202 RVMDRL----P----EARIAFIGD-----GP----YREELEKMFTG-------M---PAV-FTGMLLGEELSQAYASGDV 253 (385)
Q Consensus 202 ~a~~~~----~----~~~l~i~G~-----g~----~~~~l~~~~~~-------~---~i~-~~g~~~~~~~~~~~~~adi 253 (385)
+|++++ | ++.|+-++. .+ ..+++.+++.+ . .|. +.+.++.+++..+|+.||+
T Consensus 296 ~Afe~fL~~~P~~~~kv~liQi~~psr~~~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv 375 (474)
T PF00982_consen 296 RAFERFLERYPEYRGKVVLIQIAVPSREDVPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADV 375 (474)
T ss_dssp HHHHHHHHH-GGGTTTEEEEEE--B-STTSHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SE
T ss_pred HHHHHHHHhCcCccCcEEEEEEeeccCccchhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhh
Confidence 888765 3 456665552 11 12333333321 1 244 5667999999999999999
Q ss_pred EEEcCCCCCCcHHHHHHHhcCCc----EEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc-CHHHHHHHHH
Q 016648 254 FVMPSESETLGLVVLEAMSSGIP----VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQ 328 (385)
Q Consensus 254 ~v~ps~~e~~~~~~~Ea~a~G~P----vI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~ 328 (385)
++.++..+|+.++..|+.+|..+ +|.|...|..+.+ +...++++|.|.++++++|.++++ .+++++...+
T Consensus 376 ~lvTslrDGmNLva~Eyva~q~~~~GvLiLSefaGaa~~L-----~~~al~VNP~d~~~~A~ai~~AL~M~~~Er~~r~~ 450 (474)
T PF00982_consen 376 ALVTSLRDGMNLVAKEYVACQDDNPGVLILSEFAGAAEQL-----SEAALLVNPWDIEEVADAIHEALTMPPEERKERHA 450 (474)
T ss_dssp EEE--SSBS--HHHHHHHHHS-TS--EEEEETTBGGGGT------TTS-EEE-TT-HHHHHHHHHHHHT--HHHHHHHHH
T ss_pred EEecchhhccCCcceEEEEEecCCCCceEeeccCCHHHHc-----CCccEEECCCChHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999765 7788888888887 334589999999999999999999 5567777777
Q ss_pred HHHHHHHhCCHHHHHHHHHHHH
Q 016648 329 AARQEMEKYDWRAATRTIRNEQ 350 (385)
Q Consensus 329 ~a~~~~~~~s~~~~~~~~~~~i 350 (385)
..++.+.+++...+++.+++.+
T Consensus 451 ~~~~~v~~~~~~~W~~~~l~~L 472 (474)
T PF00982_consen 451 RLREYVREHDVQWWAESFLRDL 472 (474)
T ss_dssp HHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHhHhCCHHHHHHHHHHHh
Confidence 7888889999999999988654
No 97
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=99.71 E-value=1.2e-15 Score=137.77 Aligned_cols=276 Identities=16% Similarity=0.094 Sum_probs=197.0
Q ss_pred CEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHHHhc-
Q 016648 65 DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR- 143 (385)
Q Consensus 65 DiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~- 143 (385)
|+|++|+++.+.++.++-.+..+.++.+.+|-.+|....-....+.. .+. ..+-.+|.|-+.+....+.+.+..
T Consensus 125 D~VWVHDYhL~llp~~LR~~~~~~~IgFFlHiPFPs~eifr~LP~r~----eil-~glL~aDlIGFqt~~y~rnFl~~~~ 199 (474)
T PRK10117 125 DIIWIHDYHLLPFASELRKRGVNNRIGFFLHIPFPTPEIFNALPPHD----ELL-EQLCDYDLLGFQTENDRLAFLDCLS 199 (474)
T ss_pred CEEEEeccHhhHHHHHHHHhCCCCcEEEEEeCCCCChHHHhhCCChH----HHH-HHHHhCccceeCCHHHHHHHHHHHH
Confidence 89999999888887776666677899999999887643222222211 122 234569999999988887776521
Q ss_pred ---cc------------CCCcEEEeeCCCCCCCCCCCCCC--hhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHh
Q 016648 144 ---VT------------AANKIRIWKKGVDSESFHPRFRS--SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 206 (385)
Q Consensus 144 ---~~------------~~~~i~vi~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 206 (385)
+. ..-++.+.|-|||++.+...... .....++.....++.+|+-+.|++.-||+..=++|+++
T Consensus 200 ~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a~~~~~~~~~~lr~~~~~~~lilgVDRLDytKGi~~rl~Afe~ 279 (474)
T PRK10117 200 NLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEA 279 (474)
T ss_pred HHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHhhchHHHHHHHHHHHcCCCeEEEEecccccccCHHHHHHHHHH
Confidence 10 01236678889998776432221 11112222223467789999999999999988888877
Q ss_pred C----C----CceEEEEeCC-----c----cHHHHHHHHcCC----------CeE-EecccChHHHHHHHHhCcEEEEcC
Q 016648 207 L----P----EARIAFIGDG-----P----YREELEKMFTGM----------PAV-FTGMLLGEELSQAYASGDVFVMPS 258 (385)
Q Consensus 207 ~----~----~~~l~i~G~g-----~----~~~~l~~~~~~~----------~i~-~~g~~~~~~~~~~~~~adi~v~ps 258 (385)
+ | ++.++-++.. + ...++++++.+. .|. +...++.+++..+|+.||+++.++
T Consensus 280 fL~~~Pe~~gkvvlvQia~psR~~v~~Y~~l~~~v~~~vg~INg~fg~~~w~Pv~y~~~~~~~~~l~alyr~ADv~lVTp 359 (474)
T PRK10117 280 LLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTP 359 (474)
T ss_pred HHHhChhhcCCEEEEEEcCCCCCccHHHHHHHHHHHHHHHHHHhccCCCCceeEEEecCCCCHHHHHHHHHhccEEEecc
Confidence 5 3 4556655521 1 122333333221 144 456789999999999999999999
Q ss_pred CCCCCcHHHHHHHhcCC-----cEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc-CHHHHHHHHHHHHH
Q 016648 259 ESETLGLVVLEAMSSGI-----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQ 332 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~-----PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~a~~ 332 (385)
..+|+.++..|+.+|-. .+|.|...|..+.+ . ..++++|.|.++++++|.++++ .++++++..+..++
T Consensus 360 lRDGMNLVAkEyva~q~~~~~GvLILSefAGaA~~L---~---~AllVNP~d~~~~A~Ai~~AL~Mp~~Er~~R~~~l~~ 433 (474)
T PRK10117 360 LRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL---T---SALIVNPYDRDEVAAALDRALTMPLAERISRHAEMLD 433 (474)
T ss_pred cccccccccchheeeecCCCCccEEEecccchHHHh---C---CCeEECCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999965 37889998888887 3 3689999999999999999999 45667777777778
Q ss_pred HHHhCCHHHHHHHHHHHHH
Q 016648 333 EMEKYDWRAATRTIRNEQY 351 (385)
Q Consensus 333 ~~~~~s~~~~~~~~~~~iy 351 (385)
.+.+++...+++.+++.+-
T Consensus 434 ~v~~~dv~~W~~~fL~~L~ 452 (474)
T PRK10117 434 VIVKNDINHWQECFISDLK 452 (474)
T ss_pred HhhhCCHHHHHHHHHHHHH
Confidence 8889999999999986553
No 98
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.68 E-value=1.9e-14 Score=127.28 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=177.5
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
...+.++++++++||+|+..+. ....+..+.++..++|++....+..+.. ..+...+.++.|.+
T Consensus 79 ~~~~a~~il~~~kPd~vig~Gg-yvs~P~~~Aa~~~~iPv~ihEqn~~~G~---------------ank~~~~~a~~V~~ 142 (357)
T COG0707 79 GVLQARKILKKLKPDVVIGTGG-YVSGPVGIAAKLLGIPVIIHEQNAVPGL---------------ANKILSKFAKKVAS 142 (357)
T ss_pred HHHHHHHHHHHcCCCEEEecCC-ccccHHHHHHHhCCCCEEEEecCCCcch---------------hHHHhHHhhceeee
Confidence 3557788999999999999876 3345566778889999998666654332 45667788998887
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEe-eccccccHHHHHHHHHhCCC
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG-RLGVEKSLDFLKRVMDRLPE 209 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G-~~~~~k~~~~l~~a~~~~~~ 209 (385)
.-+. ...+ .+++++.+..+++..+... ... ...+ ... ..++++|+.+| +.+...--+.+.++...+.+
T Consensus 143 ~f~~-----~~~~-~~~~~~~~tG~Pvr~~~~~-~~~-~~~~--~~~-~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~ 211 (357)
T COG0707 143 AFPK-----LEAG-VKPENVVVTGIPVRPEFEE-LPA-AEVR--KDG-RLDKKTILVTGGSQGAKALNDLVPEALAKLAN 211 (357)
T ss_pred cccc-----cccc-CCCCceEEecCcccHHhhc-cch-hhhh--hhc-cCCCcEEEEECCcchhHHHHHHHHHHHHHhhh
Confidence 7665 1122 2456788999999877665 211 1111 111 12566666555 45555544555566666664
Q ss_pred -ceEEE-EeCCccHHHHHHHHcCCC-eEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCC-
Q 016648 210 -ARIAF-IGDGPYREELEKMFTGMP-AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI- 285 (385)
Q Consensus 210 -~~l~i-~G~g~~~~~l~~~~~~~~-i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~- 285 (385)
++++. +|.+. .+++.....+.+ +.+.+|. ++|..+|+.||++|.= +.++++.|.+++|+|.|.-+.+..
T Consensus 212 ~~~v~~~~G~~~-~~~~~~~~~~~~~~~v~~f~--~dm~~~~~~ADLvIsR----aGa~Ti~E~~a~g~P~IliP~p~~~ 284 (357)
T COG0707 212 RIQVIHQTGKND-LEELKSAYNELGVVRVLPFI--DDMAALLAAADLVISR----AGALTIAELLALGVPAILVPYPPGA 284 (357)
T ss_pred CeEEEEEcCcch-HHHHHHHHhhcCcEEEeeHH--hhHHHHHHhccEEEeC----CcccHHHHHHHhCCCEEEeCCCCCc
Confidence 66554 44444 556666555555 8888998 8999999999999943 458999999999999997765433
Q ss_pred -------CcccccCCCCCeeEeeCCCC--HHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 016648 286 -------PDIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTI 346 (385)
Q Consensus 286 -------~e~~~~~~~~~~g~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~ 346 (385)
...+ .+...+.+++..+ ++++.+.|.+++++++..++|.+++++....-.-+.+++..
T Consensus 285 ~~~Q~~NA~~l---~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~~p~aa~~i~~~~ 351 (357)
T COG0707 285 DGHQEYNAKFL---EKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLGKPDAAERIADLL 351 (357)
T ss_pred cchHHHHHHHH---HhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 2334 4455666666544 88999999999999999999999998776544444444443
No 99
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=99.68 E-value=1.1e-14 Score=131.00 Aligned_cols=293 Identities=17% Similarity=0.197 Sum_probs=207.2
Q ss_pred ccccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCC
Q 016648 47 LSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 126 (385)
Q Consensus 47 ~~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 126 (385)
.+..+..++.+..+.. |+|++|+++.+.++.++-.+....++.+.+|-.+|...--....+.. -.-..+-.||
T Consensus 133 vN~~FAd~i~~~~~~g--DiIWVhDYhL~L~P~mlR~~~~~~~IgfFlHiPfPssEvfr~lP~r~-----eIl~gll~~d 205 (486)
T COG0380 133 VNRKFADKIVEIYEPG--DIIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLPWRE-----EILEGLLGAD 205 (486)
T ss_pred HHHHHHHHHHHhcCCC--CEEEEEechhhhhHHHHHHhCCCceEEEEEeCCCCCHHHHhhCchHH-----HHHHHhhcCC
Confidence 4455556666666666 99999999888888877777778889999999887643221111111 1122356699
Q ss_pred eEEEcChhHHHHHHHhccc-----------------CCCcEEEeeCCCCCCCCCCCCCChh----hHhhhcCCCCCCcEE
Q 016648 127 LTLVPSVAIGKDLEAARVT-----------------AANKIRIWKKGVDSESFHPRFRSSE----MRWRLSNGEPDKPLI 185 (385)
Q Consensus 127 ~ii~~s~~~~~~~~~~~~~-----------------~~~~i~vi~~~v~~~~~~~~~~~~~----~~~~~~~~~~~~~~i 185 (385)
.|-+.++..++.+...... ...++..+|-|+|+..+........ ...-......++.+|
T Consensus 206 ligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~~~~~v~~~~~el~~~~~~~~kii 285 (486)
T COG0380 206 LIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSPSVQEKVLELKAELGRNKKLI 285 (486)
T ss_pred eeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhhcCCchhhHHHHHHHHhcCCceEE
Confidence 9999998888877554210 1145677899999887754332211 111111122347889
Q ss_pred EEEeeccccccHHHHHHHHHhC----C----CceEEEEeCCc---------cHHHHHHHHcCC----------Ce-EEec
Q 016648 186 VHVGRLGVEKSLDFLKRVMDRL----P----EARIAFIGDGP---------YREELEKMFTGM----------PA-VFTG 237 (385)
Q Consensus 186 ~~~G~~~~~k~~~~l~~a~~~~----~----~~~l~i~G~g~---------~~~~l~~~~~~~----------~i-~~~g 237 (385)
+.+.|++.-||+..=+.|++++ | ++.++-++... ....++....+. .| .+.-
T Consensus 286 vgvDRlDy~kGi~~rl~Afe~lL~~~Pe~~~kvvliQi~~pSr~~v~~y~~~~~~i~~~V~rIN~~fG~~~~~Pv~~l~~ 365 (486)
T COG0380 286 VGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAPPSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHR 365 (486)
T ss_pred EEehhcccccCcHHHHHHHHHHHHhChhhhCceEEEEecCCCccccHHHHHHHHHHHHHHHHHHhhcCCCCcceeEEEec
Confidence 9999999999998888888776 3 45555555221 122233332211 23 4566
Q ss_pred ccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcC----CcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHH
Q 016648 238 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG----IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 313 (385)
Q Consensus 238 ~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G----~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i 313 (385)
.++.+++..+|+.||+++..+..+|+.++..|+.+|- -+.|.|...|....+ .+ .++++|.|.++++++|
T Consensus 366 ~~~~~~l~al~~~aDv~lVtplrDGMNLvakEyVa~q~~~~G~LiLSeFaGaa~~L---~~---AliVNP~d~~~va~ai 439 (486)
T COG0380 366 DLDRNELLALYRAADVMLVTPLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASEL---RD---ALIVNPWDTKEVADAI 439 (486)
T ss_pred cCCHHHHHHHHhhhceeeeccccccccHHHHHHHHhhcCCCCcEEEeccccchhhh---cc---CEeECCCChHHHHHHH
Confidence 6999999999999999999999999999999999984 477888887777777 22 6899999999999999
Q ss_pred hHhhc-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 016648 314 EPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYN 352 (385)
Q Consensus 314 ~~ll~-~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~ 352 (385)
.++++ .++++++.-+..++.+.+++...+++.+++.+.+
T Consensus 440 ~~AL~m~~eEr~~r~~~~~~~v~~~d~~~W~~~fl~~la~ 479 (486)
T COG0380 440 KRALTMSLEERKERHEKLLKQVLTHDVARWANSFLDDLAQ 479 (486)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 99998 5667777777777888889999999998876655
No 100
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=99.66 E-value=7.1e-15 Score=133.60 Aligned_cols=242 Identities=16% Similarity=0.180 Sum_probs=144.0
Q ss_pred HHHHHHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhH----hh-------h-----cCC
Q 016648 115 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMR----WR-------L-----SNG 178 (385)
Q Consensus 115 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~----~~-------~-----~~~ 178 (385)
..+++.....||.+.++|+-++.+.......+ +=.|+|||++.+.++...+-+..+ .+ . ...
T Consensus 212 ~~iEraaA~~AdvFTTVSeITa~Ea~~LL~r~--pDvV~pNGl~v~~~~~~~efqnl~~~~k~ki~~fv~~~f~g~~dfd 289 (633)
T PF05693_consen 212 HSIERAAAHYADVFTTVSEITAKEAEHLLKRK--PDVVTPNGLNVDKFPALHEFQNLHAKAKEKIHEFVRGHFYGHYDFD 289 (633)
T ss_dssp HHHHHHHHHHSSEEEESSHHHHHHHHHHHSS----SEE----B-GGGTSSTTHHHHHHHHHHHHHHHHHHHHSTT---S-
T ss_pred HHHHHHHHHhcCeeeehhhhHHHHHHHHhCCC--CCEEcCCCccccccccchHHHHHHHHHHHHHHHHHHHHhcccCCCC
Confidence 45788889999999999999999988765432 225789999998876654322111 01 0 112
Q ss_pred CCCCcEEEEEeeccc-cccHHHHHHHHHhCC--------Cce---EEEEeC-----------------------------
Q 016648 179 EPDKPLIVHVGRLGV-EKSLDFLKRVMDRLP--------EAR---IAFIGD----------------------------- 217 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~-~k~~~~l~~a~~~~~--------~~~---l~i~G~----------------------------- 217 (385)
+++..+|...||... .||+|.+++|+.++. +.. |+|+-.
T Consensus 290 ~d~tl~~ftsGRYEf~NKG~D~fieAL~rLn~~lk~~~~~~tVVaFii~pa~~~~~~ve~l~~~a~~~~l~~t~~~i~~~ 369 (633)
T PF05693_consen 290 LDKTLYFFTSGRYEFRNKGIDVFIEALARLNHRLKQAGSDKTVVAFIIVPAKTNSFNVESLKGQAVTKQLRDTVDEIQEK 369 (633)
T ss_dssp GGGEEEEEEESSS-TTTTTHHHHHHHHHHHHHHHHHTT-S-EEEEEEE---SEEEE-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceEEEEeeeceeeecCCccHHHHHHHHHHHHHhhcCCCCeEEEEEEecCccCCcCHHHHhhHHHHHHHHHHHHHHHHH
Confidence 234566778888855 599999999998761 222 333210
Q ss_pred -----------C--cc---------HHHHHHHH----------------------------cC--------C--CeEEec
Q 016648 218 -----------G--PY---------REELEKMF----------------------------TG--------M--PAVFTG 237 (385)
Q Consensus 218 -----------g--~~---------~~~l~~~~----------------------------~~--------~--~i~~~g 237 (385)
| +. .-.+++.+ ++ . +|+|++
T Consensus 370 ~g~~~~~~~~~~~~p~~~~~~~~~~~~~lkr~i~~~~r~~lPPi~TH~l~d~~~DpILn~irr~~L~N~~~drVKVIF~P 449 (633)
T PF05693_consen 370 IGKRLFESCLSGRLPDLNELLDKEDIVRLKRCIFALQRNSLPPITTHNLHDDSNDPILNMIRRLGLFNNPEDRVKVIFHP 449 (633)
T ss_dssp HHHHHHHHHHHSSS-SHHHCS-HHHHHHHHHHHHTT--T----SBSEEETTTTT-HHHHHHHHTT----TT-SEEEEE--
T ss_pred HHHHHHHHHhCCCCCChHHhcChhhHHHHHHHHHHhccCCCCCeeeeCCCCCccCHHHHHHHhCCCCCCCCCceEEEEee
Confidence 0 00 00011100 00 0 144543
Q ss_pred -ccC------hHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCC--CCCeeEee-C--CCC
Q 016648 238 -MLL------GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ--DGKIGYLF-N--PGD 305 (385)
Q Consensus 238 -~~~------~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~--~~~~g~~~-~--~~~ 305 (385)
+++ .-+..+++..||+.|+||.+|++|.+.+|+.++|+|.|+|+..|...++.... ....|+.+ + ..+
T Consensus 450 ~yL~~~dgif~l~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n 529 (633)
T PF05693_consen 450 EYLSGTDGIFNLDYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVVDRRDKN 529 (633)
T ss_dssp S---TTSSSS-S-HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-
T ss_pred ccccCCCCCCCCCHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEEeCCCCC
Confidence 222 23578999999999999999999999999999999999999998876663211 12234433 3 224
Q ss_pred HH----HHHHHHhHhhc-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Q 016648 306 LD----DCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWR 359 (385)
Q Consensus 306 ~~----~l~~~i~~ll~-~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~~~~ 359 (385)
.+ ++++.|.+... +...+..++.++.+..+..+|+.....|. +.|+.++.+..
T Consensus 530 ~~e~v~~la~~l~~f~~~~~rqri~~Rn~ae~LS~~~dW~~~~~yY~-~Ay~~AL~~a~ 587 (633)
T PF05693_consen 530 YDESVNQLADFLYKFCQLSRRQRIIQRNRAERLSDLADWKNFGKYYE-KAYDLALRRAY 587 (633)
T ss_dssp HHHHHHHHHHHHHHHHT--HHHHHHHHHHHHHHGGGGBHHHHCHHHH-HHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHhcC
Confidence 44 44555555444 56677788888888888999999999997 68998887643
No 101
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=99.66 E-value=5.6e-14 Score=134.80 Aligned_cols=294 Identities=18% Similarity=0.162 Sum_probs=203.2
Q ss_pred cCCCEEEeCCCchhHHHHH----HHHH----------HhCCCEEEEEecCCCcccccccccccch---------------
Q 016648 62 FKPDIIHASSPGIMVFGAL----IIAK----------LLCVPIVMSYHTHVPVYIPRYTFSWLVK--------------- 112 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~----~~~~----------~~~~p~v~~~h~~~~~~~~~~~~~~~~~--------------- 112 (385)
.+||+||+|++++...+.- ++.. ..+..+++|.|+..+.....+....+.+
T Consensus 247 ~~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A~e~vr~~tvFTtHTpvpqG~d~Fp~~l~~~~~~~~~~~lgl~~~~ 326 (778)
T cd04299 247 IKPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEALEAVRASTVFTTHTPVPAGHDRFPPDLVERYFGPYARELGLSRDR 326 (778)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHHHHhhCCeEEEecCCchHHHhhhCCHHHHHHHhhHHHHHcCCCHHH
Confidence 4899999999865544431 1111 1246789999997654321111110000
Q ss_pred -------------hHHHHHHHHHHhCCeEEEcChhHHHHHHHhcc-------cCCCcEEEeeCCCCCCCCC-CCC-----
Q 016648 113 -------------PMWLVIKFLHRAADLTLVPSVAIGKDLEAARV-------TAANKIRIWKKGVDSESFH-PRF----- 166 (385)
Q Consensus 113 -------------~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~-------~~~~~i~vi~~~v~~~~~~-~~~----- 166 (385)
-.-.+.+..+..|+.+-++|+-..+..++.+. ....++.-|-|||+...+. |..
T Consensus 327 ~~~lg~e~~~~~~~~~nM~~laL~~S~~vNgVS~lHg~vsr~mf~~~~~g~p~~~~~i~~ITNGVh~~~W~~P~~~~l~~ 406 (778)
T cd04299 327 FLALGRENPGDDPEPFNMAVLALRLAQRANGVSRLHGEVSREMFAGLWPGFPVEEVPIGHVTNGVHVPTWVAPEMRELYD 406 (778)
T ss_pred HhhhccccccCccCceeHHHHHHHhcCeeeeecHHHHHHHHHHhhhhhccCCcccCceeceeCCcchhhhcCHHHHHHHH
Confidence 01135677788999999999987655555331 1145688999999998766 210
Q ss_pred -----------------------CChh-------hHhhh--------------------------cCCCCCCcEEEEEee
Q 016648 167 -----------------------RSSE-------MRWRL--------------------------SNGEPDKPLIVHVGR 190 (385)
Q Consensus 167 -----------------------~~~~-------~~~~~--------------------------~~~~~~~~~i~~~G~ 190 (385)
...+ .+.++ ....++.+++++++|
T Consensus 407 ~~~g~~w~~~~~~~~~~~~~~~i~d~~lw~~K~~~K~~L~~~v~~~~~~~~~~~g~~~~~~~~~~~~ldpd~ltigfarR 486 (778)
T cd04299 407 RYLGGDWRERPTDPELWEAVDDIPDEELWEVRQQLRRRLIEFVRRRLRRQWLRRGASAEEIGEADDVLDPNVLTIGFARR 486 (778)
T ss_pred HhcCcchhhccchHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCchhhhhhcCCccCCCccEEeeeec
Confidence 0100 00000 012345678999999
Q ss_pred ccccccHHHHHHHHHhC--------CCceEEEEeCCcc--------HHHHHHHHcC----CCeEEecccChHHHHHHHHh
Q 016648 191 LGVEKSLDFLKRVMDRL--------PEARIAFIGDGPY--------REELEKMFTG----MPAVFTGMLLGEELSQAYAS 250 (385)
Q Consensus 191 ~~~~k~~~~l~~a~~~~--------~~~~l~i~G~g~~--------~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~ 250 (385)
+...|+.++++..+.++ .++++++.|++.. .+.+.++..+ .+|.|+...+-.-...+++.
T Consensus 487 fa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~~~kVvfle~Yd~~lA~~LvaG 566 (778)
T cd04299 487 FATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEFRGRIVFLEDYDMALARHLVQG 566 (778)
T ss_pred chhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCCCCcEEEEcCCCHHHHHHHHhh
Confidence 99999999998876655 3689999996541 1233334442 26888877776677788999
Q ss_pred CcEEEEcCC--CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCC------------CCHHHHHHHHhHh
Q 016648 251 GDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP------------GDLDDCLSKLEPL 316 (385)
Q Consensus 251 adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~------------~~~~~l~~~i~~l 316 (385)
||+.++||+ .|++|++=+-||.-|.+-+++-.|...|.. ++.||+.+.. .|+++|.+.+++.
T Consensus 567 ~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvlDGww~E~~----~g~nGwaig~~~~~~~~~~~d~~da~~Ly~~Le~~ 642 (778)
T cd04299 567 VDVWLNTPRRPLEASGTSGMKAALNGGLNLSVLDGWWDEGY----DGENGWAIGDGDEYEDDEYQDAEEAEALYDLLENE 642 (778)
T ss_pred hhhcccCCCCCCCCCccchHHHHHcCCeeeecccCcccccc----CCCCceEeCCCccccChhhcchhhHHHHHHHHHHH
Confidence 999999999 999999999999999999999888888776 5789999987 5677777777653
Q ss_pred hc----C------HHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHH
Q 016648 317 LY----N------QELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFWR 359 (385)
Q Consensus 317 l~----~------~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~~~~~~~ 359 (385)
+- + |..+.+|.+++.... ..|||++++++|.+.+|.-+....+
T Consensus 643 i~p~yy~r~~~g~p~~W~~~~k~sm~~~~p~fs~~Rmv~eY~~~~Y~p~~~~~~ 696 (778)
T cd04299 643 VIPLFYDRDEGGYPPGWVAMMKHSMATLGPRFSAERMVREYVERFYLPAARRGR 696 (778)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhHHHHHHHHH
Confidence 32 2 566777777777765 6899999999999999987766544
No 102
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=99.63 E-value=2.5e-13 Score=123.53 Aligned_cols=192 Identities=11% Similarity=0.149 Sum_probs=142.1
Q ss_pred HhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHH
Q 016648 123 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKR 202 (385)
Q Consensus 123 ~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~ 202 (385)
.+.|.||+.++...+.+.+.+. +..++.++|-|+-.. ... ....+..+++++. ..-++.+.+
T Consensus 238 ~~~~~iIv~T~~q~~di~~r~~-~~~~~~~ip~g~i~~---~~~-----------~~r~~~~~l~~t~---s~~I~~i~~ 299 (438)
T TIGR02919 238 TRNKKIIIPNKNEYEKIKELLD-NEYQEQISQLGYLYP---FKK-----------DNKYRKQALILTN---SDQIEHLEE 299 (438)
T ss_pred cccCeEEeCCHHHHHHHHHHhC-cccCceEEEEEEEEe---ecc-----------ccCCcccEEEECC---HHHHHHHHH
Confidence 7889999999998888888775 356777788776421 110 1112345666662 445666667
Q ss_pred HHHhCCCceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 203 VMDRLPEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 203 a~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
+.+++|+++|.| |.+.+ .+++.++....|++..+.+...++.++|..||+++..+..|+++.++.||+..|+||++.+
T Consensus 300 Lv~~lPd~~f~I-ga~te~s~kL~~L~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd 378 (438)
T TIGR02919 300 IVQALPDYHFHI-AALTEMSSKLMSLDKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFE 378 (438)
T ss_pred HHHhCCCcEEEE-EecCcccHHHHHHHhcCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEe
Confidence 777889999999 75554 5677676444576666665556899999999999999999999999999999999999998
Q ss_pred CC-CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCH
Q 016648 282 AG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDW 339 (385)
Q Consensus 282 ~~-~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~ 339 (385)
.. +..+++ .+ |.+++.+++++++++|.+++.+++..++.-..-++.+..-+.
T Consensus 379 ~t~~~~~~i---~~---g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~~~~~ 431 (438)
T TIGR02919 379 ETAHNRDFI---AS---ENIFEHNEVDQLISKLKDLLNDPNQFRELLEQQREHANDISK 431 (438)
T ss_pred cccCCcccc---cC---CceecCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCCH
Confidence 76 334555 33 789999999999999999999997666554444444433333
No 103
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.62 E-value=8.3e-14 Score=136.18 Aligned_cols=278 Identities=14% Similarity=0.139 Sum_probs=196.0
Q ss_pred CEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHHHhc-
Q 016648 65 DIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR- 143 (385)
Q Consensus 65 DiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~- 143 (385)
|+|++|+++.+.++.++..+....++.+.+|..+|....-....+.. -.-..+-.||.|-+.+...++.+.+..
T Consensus 203 d~VWVhDYhL~llP~~LR~~~~~~~IgfFlHiPFPs~eifr~LP~r~-----eiL~glL~aDlIGFht~~yar~Fl~~~~ 277 (854)
T PLN02205 203 DFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPIRE-----ELLRALLNSDLIGFHTFDYARHFLSCCS 277 (854)
T ss_pred CEEEEeCchhhHHHHHHHhhCCCCcEEEEecCCCCChHHHhhCCcHH-----HHHHHHhcCCeEEecCHHHHHHHHHHHH
Confidence 89999999888888777666678899999999887643222222111 222345679999999988888776521
Q ss_pred ---cc---------------CCCcEEEeeCCCCCCCCCCCCCChh---hHhhhc--CCCCCCcEEEEEeeccccccHHHH
Q 016648 144 ---VT---------------AANKIRIWKKGVDSESFHPRFRSSE---MRWRLS--NGEPDKPLIVHVGRLGVEKSLDFL 200 (385)
Q Consensus 144 ---~~---------------~~~~i~vi~~~v~~~~~~~~~~~~~---~~~~~~--~~~~~~~~i~~~G~~~~~k~~~~l 200 (385)
+. ..-++.+.|-|||.+.+.......+ ...++. ...+++.+|+-+.+++.-||+..=
T Consensus 278 r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ilgVDrlD~~KGi~~k 357 (854)
T PLN02205 278 RMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCDQDRIMLLGVDDMDIFKGISLK 357 (854)
T ss_pred HHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHHhcChhHHHHHHHHHHHhccCCCEEEEEccCcccccCHHHH
Confidence 10 1123667888999887644322211 111111 112357889999999999999988
Q ss_pred HHHHHhC----CC----ceEEEEeC-----CccHHHH----HHHHcCC----------CeEE-ecccChHHHHHHHHhCc
Q 016648 201 KRVMDRL----PE----ARIAFIGD-----GPYREEL----EKMFTGM----------PAVF-TGMLLGEELSQAYASGD 252 (385)
Q Consensus 201 ~~a~~~~----~~----~~l~i~G~-----g~~~~~l----~~~~~~~----------~i~~-~g~~~~~~~~~~~~~ad 252 (385)
+.|++++ |+ +.++-+.. ++..+++ .+++.+. .|++ ...++.+++..+|+.||
T Consensus 358 l~A~e~~L~~~P~~~gkvvlvQia~psr~~~~~y~~~~~ev~~~v~rIN~~fg~~~~~Pv~~~~~~~~~~e~~aly~~AD 437 (854)
T PLN02205 358 LLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVKRINETFGKPGYDPIVLIDAPLKFYERVAYYVVAE 437 (854)
T ss_pred HHHHHHHHHhCccccCCEEEEEEecCCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCceEEEEecCCCHHHHHHHHHhcc
Confidence 8888775 43 45554542 2222222 2322211 2454 47789999999999999
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCC-------------------cEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHH
Q 016648 253 VFVMPSESETLGLVVLEAMSSGI-------------------PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 313 (385)
Q Consensus 253 i~v~ps~~e~~~~~~~Ea~a~G~-------------------PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i 313 (385)
+++.++..+|+.++..|+.+|.. .+|.|...|....+ . ..+.++|.|.++++++|
T Consensus 438 v~lVT~lRDGMNLva~Eyia~~~~~~~~~~~~~~~~~~~~~gvLiLSEfaGaa~~L---~---~Ai~VNP~d~~~~a~ai 511 (854)
T PLN02205 438 CCLVTAVRDGMNLIPYEYIISRQGNEKLDKLLGLEPSTPKKSMLVVSEFIGCSPSL---S---GAIRVNPWNIDAVADAM 511 (854)
T ss_pred EEEeccccccccccchheeEEccCccccccccccccccCCCCceEeeeccchhHHh---C---cCeEECCCCHHHHHHHH
Confidence 99999999999999999999854 36778877777666 2 36899999999999999
Q ss_pred hHhhc-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 016648 314 EPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 353 (385)
Q Consensus 314 ~~ll~-~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~ 353 (385)
.++++ .+++++...++.++++.+++...+++.++.++.+.
T Consensus 512 ~~AL~m~~~Er~~R~~~~~~~v~~~d~~~W~~~fl~~l~~~ 552 (854)
T PLN02205 512 DSALEMAEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERT 552 (854)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHH
Confidence 99999 45566666667777888999999999998766543
No 104
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=99.56 E-value=3.5e-14 Score=101.50 Aligned_cols=90 Identities=29% Similarity=0.503 Sum_probs=83.8
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHH
Q 016648 253 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQ 332 (385)
Q Consensus 253 i~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~ 332 (385)
+++.|+..++++.+++|+|+||+|+|+++.+++.+++ .++..++.++ |++++.+++..+++|++.+++++++|++
T Consensus 1 i~Ln~~~~~~~~~r~~E~~a~G~~vi~~~~~~~~~~~---~~~~~~~~~~--~~~el~~~i~~ll~~~~~~~~ia~~a~~ 75 (92)
T PF13524_consen 1 INLNPSRSDGPNMRIFEAMACGTPVISDDSPGLREIF---EDGEHIITYN--DPEELAEKIEYLLENPEERRRIAKNARE 75 (92)
T ss_pred CEeeCCCCCCCchHHHHHHHCCCeEEECChHHHHHHc---CCCCeEEEEC--CHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 3677888899999999999999999999999999999 8888999888 9999999999999999999999999999
Q ss_pred HH-HhCCHHHHHHHHH
Q 016648 333 EM-EKYDWRAATRTIR 347 (385)
Q Consensus 333 ~~-~~~s~~~~~~~~~ 347 (385)
.+ ++|+|++.+++++
T Consensus 76 ~v~~~~t~~~~~~~il 91 (92)
T PF13524_consen 76 RVLKRHTWEHRAEQIL 91 (92)
T ss_pred HHHHhCCHHHHHHHHH
Confidence 98 4799999999886
No 105
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.55 E-value=2.1e-12 Score=115.62 Aligned_cols=236 Identities=18% Similarity=0.194 Sum_probs=146.9
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
..+..+++++++||+|+.++. ...++..+.++..++|+++.-.+..+ ....+.+.+.++.+++.
T Consensus 80 ~~~~~~i~~~~kPdvvi~~Gg-y~s~p~~~aa~~~~~p~~i~e~n~~~---------------g~~nr~~~~~a~~v~~~ 143 (352)
T PRK12446 80 VMDAYVRIRKLKPDVIFSKGG-FVSVPVVIGGWLNRVPVLLHESDMTP---------------GLANKIALRFASKIFVT 143 (352)
T ss_pred HHHHHHHHHhcCCCEEEecCc-hhhHHHHHHHHHcCCCEEEECCCCCc---------------cHHHHHHHHhhCEEEEE
Confidence 346668899999999999875 44555677889999999873333211 11456778999999887
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEe-eccccccH-HHHHHHHHhC-C
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG-RLGVEKSL-DFLKRVMDRL-P 208 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G-~~~~~k~~-~~l~~a~~~~-~ 208 (385)
-+...+.+ +.+++.+..+++..+..... ....+..+.. .+++++++.+| +.+. +.+ +.+.+++..+ .
T Consensus 144 f~~~~~~~------~~~k~~~tG~Pvr~~~~~~~--~~~~~~~~~l-~~~~~~iLv~GGS~Ga-~~in~~~~~~l~~l~~ 213 (352)
T PRK12446 144 FEEAAKHL------PKEKVIYTGSPVREEVLKGN--REKGLAFLGF-SRKKPVITIMGGSLGA-KKINETVREALPELLL 213 (352)
T ss_pred ccchhhhC------CCCCeEEECCcCCccccccc--chHHHHhcCC-CCCCcEEEEECCccch-HHHHHHHHHHHHhhcc
Confidence 65433222 34688888888877654322 1222222322 33455655554 4443 444 4455556555 3
Q ss_pred CceEEE-EeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC---
Q 016648 209 EARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG--- 284 (385)
Q Consensus 209 ~~~l~i-~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~--- 284 (385)
+++++. +|.....+.... . .++...+++ .+++.++|+.||++|. -+.++++.|++++|+|.|......
T Consensus 214 ~~~vv~~~G~~~~~~~~~~-~--~~~~~~~f~-~~~m~~~~~~adlvIs----r~G~~t~~E~~~~g~P~I~iP~~~~~~ 285 (352)
T PRK12446 214 KYQIVHLCGKGNLDDSLQN-K--EGYRQFEYV-HGELPDILAITDFVIS----RAGSNAIFEFLTLQKPMLLIPLSKFAS 285 (352)
T ss_pred CcEEEEEeCCchHHHHHhh-c--CCcEEecch-hhhHHHHHHhCCEEEE----CCChhHHHHHHHcCCCEEEEcCCCCCC
Confidence 566554 454432222222 1 244555665 2579999999999994 445889999999999999886531
Q ss_pred ------CCcccccCCCCCeeEeeC--CCCHHHHHHHHhHhhcCHHHHH
Q 016648 285 ------IPDIIPEDQDGKIGYLFN--PGDLDDCLSKLEPLLYNQELRE 324 (385)
Q Consensus 285 ------~~e~~~~~~~~~~g~~~~--~~~~~~l~~~i~~ll~~~~~~~ 324 (385)
..+.+ .+...+..+. .-+++.+.+++.++++|++.++
T Consensus 286 ~~~Q~~Na~~l---~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~ 330 (352)
T PRK12446 286 RGDQILNAESF---ERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYK 330 (352)
T ss_pred CchHHHHHHHH---HHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHH
Confidence 11233 2333444443 2368899999999998876543
No 106
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.51 E-value=1e-11 Score=112.91 Aligned_cols=266 Identities=15% Similarity=0.108 Sum_probs=165.5
Q ss_pred HHHHHHhhcc--CCCEEEeCCCchhHHHHHHHHHHhCCCEEE-EEecCCCcc--cccc-----cccccch---hHHHHHH
Q 016648 53 PRIISEVARF--KPDIIHASSPGIMVFGALIIAKLLCVPIVM-SYHTHVPVY--IPRY-----TFSWLVK---PMWLVIK 119 (385)
Q Consensus 53 ~~l~~~i~~~--~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~-~~h~~~~~~--~~~~-----~~~~~~~---~~~~~~~ 119 (385)
.+-.++++++ +||+|++.+... ..++++..|+|+++ ..|...... .+.+ ..++... .+ ...+
T Consensus 81 ~~~~~~~~~~~~~p~~v~~~Gg~v----~~~aA~~~~~p~~~~~~~esn~~~~~~~~~~~~~~~~~~~G~~~~p~-e~n~ 155 (396)
T TIGR03492 81 LGQWRALRKWAKKGDLIVAVGDIV----PLLFAWLSGKPYAFVGTAKSDYYWESGPRRSPSDEYHRLEGSLYLPW-ERWL 155 (396)
T ss_pred HHHHHHHHHHhhcCCEEEEECcHH----HHHHHHHcCCCceEEEeeccceeecCCCCCccchhhhccCCCccCHH-HHHH
Confidence 3455677888 999999988533 45567889999876 334421110 0000 0011111 11 1245
Q ss_pred HHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccc--cccH
Q 016648 120 FLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSL 197 (385)
Q Consensus 120 ~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k~~ 197 (385)
...+.||.+++..+...+.+.+.+. ++.++.|++-....... . . ....+...+++..|+-.. .+++
T Consensus 156 l~~~~a~~v~~~~~~t~~~l~~~g~----k~~~vGnPv~d~l~~~~-~-~------~l~~~~~~lllLpGSR~ae~~~~l 223 (396)
T TIGR03492 156 MRSRRCLAVFVRDRLTARDLRRQGV----RASYLGNPMMDGLEPPE-R-K------PLLTGRFRIALLPGSRPPEAYRNL 223 (396)
T ss_pred hhchhhCEEeCCCHHHHHHHHHCCC----eEEEeCcCHHhcCcccc-c-c------ccCCCCCEEEEECCCCHHHHHccH
Confidence 5668999999999999999887543 78888888744432111 1 0 111222344555565433 3567
Q ss_pred HHHHHHHHhC---CCceEEEEe-CCccHHHHHHHHcCC------------------CeEEecccChHHHHHHHHhCcEEE
Q 016648 198 DFLKRVMDRL---PEARIAFIG-DGPYREELEKMFTGM------------------PAVFTGMLLGEELSQAYASGDVFV 255 (385)
Q Consensus 198 ~~l~~a~~~~---~~~~l~i~G-~g~~~~~l~~~~~~~------------------~i~~~g~~~~~~~~~~~~~adi~v 255 (385)
..++++++.+ +++.+++.- .+...+.+++...+. ++.+..+. +++..+|+.||++|
T Consensus 224 p~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~ADlvI 301 (396)
T TIGR03492 224 KLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGR--GAFAEILHWADLGI 301 (396)
T ss_pred HHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCceEEEech--HhHHHHHHhCCEEE
Confidence 7888888887 467776643 444555565544321 14555554 78999999999999
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEecCCCCC---cccccCCC-----CCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHH
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVRAGGIP---DIIPEDQD-----GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 327 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~---e~~~~~~~-----~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 327 (385)
..| |.+..|++++|+|+|....++.. .+. +. + .+......+++.+++++.++++|++.++++.
T Consensus 302 ~rS-----Gt~T~E~a~lg~P~Ilip~~~~q~na~~~---~~~~~l~g-~~~~l~~~~~~~l~~~l~~ll~d~~~~~~~~ 372 (396)
T TIGR03492 302 AMA-----GTATEQAVGLGKPVIQLPGKGPQFTYGFA---EAQSRLLG-GSVFLASKNPEQAAQVVRQLLADPELLERCR 372 (396)
T ss_pred ECc-----CHHHHHHHHhCCCEEEEeCCCCHHHHHHH---HhhHhhcC-CEEecCCCCHHHHHHHHHHHHcCHHHHHHHH
Confidence 876 56679999999999988743321 222 11 2 3344445678999999999999998888887
Q ss_pred HHHHHHH-HhCCHHHHHHHH
Q 016648 328 QAARQEM-EKYDWRAATRTI 346 (385)
Q Consensus 328 ~~a~~~~-~~~s~~~~~~~~ 346 (385)
+++++.. +....+.+++.+
T Consensus 373 ~~~~~~lg~~~a~~~ia~~i 392 (396)
T TIGR03492 373 RNGQERMGPPGASARIAESI 392 (396)
T ss_pred HHHHHhcCCCCHHHHHHHHH
Confidence 5444443 334455554443
No 107
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=99.48 E-value=2.4e-11 Score=109.49 Aligned_cols=267 Identities=15% Similarity=0.137 Sum_probs=168.0
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
...++.+++.+++||+|++++.....+++.+.+...++|++- +|+-.... . ..-....+.+-+.++..++
T Consensus 81 ~~~~~~~~~~~~~Pd~vlv~GD~~~~la~alaA~~~~IPv~H-veaG~rs~--~-------~~eE~~r~~i~~la~l~f~ 150 (365)
T TIGR03568 81 TIIGFSDAFERLKPDLVVVLGDRFEMLAAAIAAALLNIPIAH-IHGGEVTE--G-------AIDESIRHAITKLSHLHFV 150 (365)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHhCCcEEE-EECCccCC--C-------CchHHHHHHHHHHHhhccC
Confidence 456888999999999999999767777788889999999983 34421110 0 0112233445567789999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCC-CCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEee-----ccccccHHHHHHHH
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKG-VDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR-----LGVEKSLDFLKRVM 204 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~-----~~~~k~~~~l~~a~ 204 (385)
+++...+.+.+.+. ++.++.++.|. +|.-.............++....+.+.+++.+-+ ....+.+..+++++
T Consensus 151 ~t~~~~~~L~~eg~-~~~~i~~tG~~~iD~l~~~~~~~~~~~~~~lgl~~~~~~vlvt~Hp~~~~~~~~~~~l~~li~~L 229 (365)
T TIGR03568 151 ATEEYRQRVIQMGE-DPDRVFNVGSPGLDNILSLDLLSKEELEEKLGIDLDKPYALVTFHPVTLEKESAEEQIKELLKAL 229 (365)
T ss_pred CCHHHHHHHHHcCC-CCCcEEEECCcHHHHHHhhhccCHHHHHHHhCCCCCCCEEEEEeCCCcccccCchHHHHHHHHHH
Confidence 99999999988765 56788877764 3432211111222333333322222443333333 22234567777777
Q ss_pred HhCC-CceEEEEe--CCc-c---HHHHHHHHc-CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCc
Q 016648 205 DRLP-EARIAFIG--DGP-Y---REELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 276 (385)
Q Consensus 205 ~~~~-~~~l~i~G--~g~-~---~~~l~~~~~-~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 276 (385)
.... ++ +++. .++ . .+.+.+... ..++.+.+.++..++..+++.|+++|.-| +..+.||.++|+|
T Consensus 230 ~~~~~~~--~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll~~a~~vitdS-----Sggi~EA~~lg~P 302 (365)
T TIGR03568 230 DELNKNY--IFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLLKNADAVIGNS-----SSGIIEAPSFGVP 302 (365)
T ss_pred HHhccCC--EEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHHHhCCEEEEcC-----hhHHHhhhhcCCC
Confidence 6653 33 3332 212 1 334555443 35799999999999999999999999444 2334899999999
Q ss_pred EEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 016648 277 VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIR 347 (385)
Q Consensus 277 vI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~ 347 (385)
+|+ .+.-++.+ ..|.+.+.+ ..|.+++.+++.+++ +++.++.+ ... .-|...+.++++.
T Consensus 303 vv~--l~~R~e~~---~~g~nvl~v-g~~~~~I~~a~~~~~-~~~~~~~~-----~~~~~pygdg~as~rI~ 362 (365)
T TIGR03568 303 TIN--IGTRQKGR---LRADSVIDV-DPDKEEIVKAIEKLL-DPAFKKSL-----KNVKNPYGDGNSSERII 362 (365)
T ss_pred EEe--ecCCchhh---hhcCeEEEe-CCCHHHHHHHHHHHh-ChHHHHHH-----hhCCCCCCCChHHHHHH
Confidence 995 44566766 667787766 458999999999954 44332222 111 2366666666665
No 108
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=99.39 E-value=1.4e-10 Score=101.59 Aligned_cols=267 Identities=16% Similarity=0.166 Sum_probs=172.8
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
....+.++++..+||++++.....+.. .+.-++..|+|+++.---....... ..+....+.+.+++..|.|++
T Consensus 111 ~~~~v~rFl~~~~P~l~Ii~EtElWPn-li~e~~~~~~p~~LvNaRLS~rS~~------~y~k~~~~~~~~~~~i~li~a 183 (419)
T COG1519 111 LPIAVRRFLRKWRPKLLIIMETELWPN-LINELKRRGIPLVLVNARLSDRSFA------RYAKLKFLARLLFKNIDLILA 183 (419)
T ss_pred chHHHHHHHHhcCCCEEEEEeccccHH-HHHHHHHcCCCEEEEeeeechhhhH------HHHHHHHHHHHHHHhcceeee
Confidence 456788999999999998876533332 2345677899998743222111111 112334577889999999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCC-CCCCChhhHhhhcCCCCC-CcEEEEEeeccccccHHHHHHHH----
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFH-PRFRSSEMRWRLSNGEPD-KPLIVHVGRLGVEKSLDFLKRVM---- 204 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~-~~~~~~~~~~~~~~~~~~-~~~i~~~G~~~~~k~~~~l~~a~---- 204 (385)
.|+..++.+.+.|.. ++.+..|- .... +..........+....+. +++++..++...+ -+.++++.
T Consensus 184 Qse~D~~Rf~~LGa~---~v~v~GNl---Kfd~~~~~~~~~~~~~~r~~l~~~r~v~iaaSTH~GE--eei~l~~~~~l~ 255 (419)
T COG1519 184 QSEEDAQRFRSLGAK---PVVVTGNL---KFDIEPPPQLAAELAALRRQLGGHRPVWVAASTHEGE--EEIILDAHQALK 255 (419)
T ss_pred cCHHHHHHHHhcCCc---ceEEecce---eecCCCChhhHHHHHHHHHhcCCCCceEEEecCCCch--HHHHHHHHHHHH
Confidence 999999999998752 36665552 1111 111111111111112222 7778887773222 22344544
Q ss_pred HhCCCceEEEEeCCccH-HHHHHHHcCC-----------------CeEEecccChHHHHHHHHhCcEEEEc-CCCCCCcH
Q 016648 205 DRLPEARIAFIGDGPYR-EELEKMFTGM-----------------PAVFTGMLLGEELSQAYASGDVFVMP-SESETLGL 265 (385)
Q Consensus 205 ~~~~~~~l~i~G~g~~~-~~l~~~~~~~-----------------~i~~~g~~~~~~~~~~~~~adi~v~p-s~~e~~~~ 265 (385)
++.|+..++++=..+++ +.+++++... +|.+...+ -||..+|.-+|+.++- |...-.|.
T Consensus 256 ~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~Dtm--GEL~l~y~~adiAFVGGSlv~~GGH 333 (419)
T COG1519 256 KQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTM--GELGLLYGIADIAFVGGSLVPIGGH 333 (419)
T ss_pred hhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEecH--hHHHHHHhhccEEEECCcccCCCCC
Confidence 44478888888866543 4555555432 35555555 7899999999997664 55556678
Q ss_pred HHHHHHhcCCcEEEecCC-CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHh
Q 016648 266 VVLEAMSSGIPVVGVRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 336 (385)
Q Consensus 266 ~~~Ea~a~G~PvI~s~~~-~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~ 336 (385)
-++|+.++|+|||..... ...|+.......+.++.++ |.+.+++++..+++|++.++++++++...+.+
T Consensus 334 N~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~--~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~ 403 (419)
T COG1519 334 NPLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE--DADLLAKAVELLLADEDKREAYGRAGLEFLAQ 403 (419)
T ss_pred ChhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC--CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 899999999999976432 3333332224556677776 68889999999988999999999999988743
No 109
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=99.34 E-value=1e-10 Score=103.80 Aligned_cols=256 Identities=18% Similarity=0.178 Sum_probs=156.8
Q ss_pred ccccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCC--EEEEEecCCCcccccccccccchhHHHHHHHHHHh
Q 016648 47 LSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP--IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA 124 (385)
Q Consensus 47 ~~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p--~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (385)
.-.....++.+.+++.+||++++-+.+.+.+......+..|++ +++.+- |.-+ .|... ..+.+.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrlak~lk~~~~~~~viyYI~---PqvW-----AWr~~----R~~~i~~~ 133 (373)
T PF02684_consen 66 KLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLAKKLKKRGIPIKVIYYIS---PQVW-----AWRPG----RAKKIKKY 133 (373)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHHhCCCceEEEEEC---Ccee-----eeCcc----HHHHHHHH
Confidence 3444566777788899999999987655655555556677777 665432 2211 11111 34567788
Q ss_pred CCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccc--cccHHHHHH
Q 016648 125 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKR 202 (385)
Q Consensus 125 ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k~~~~l~~ 202 (385)
+|.+++.-+...+.+.+.+. ++..+.|++-.. ..+.......+... ...++..+.+..|+-.. .+.+..+++
T Consensus 134 ~D~ll~ifPFE~~~y~~~g~----~~~~VGHPl~d~-~~~~~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~ 207 (373)
T PF02684_consen 134 VDHLLVIFPFEPEFYKKHGV----PVTYVGHPLLDE-VKPEPDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLE 207 (373)
T ss_pred HhheeECCcccHHHHhccCC----CeEEECCcchhh-hccCCCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999998763 677778775322 22222222222333 33444556777785432 355677788
Q ss_pred HHHhC----CCceEEEEeCCccHHH-HHHHHcCC--CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCC
Q 016648 203 VMDRL----PEARIAFIGDGPYREE-LEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI 275 (385)
Q Consensus 203 a~~~~----~~~~l~i~G~g~~~~~-l~~~~~~~--~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~ 275 (385)
+++.+ |++++++.......+. +.+..... ++.+.- ...+-.+.|+.||+.+..| |++.+|++.+|+
T Consensus 208 aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~m~~ad~al~~S-----GTaTLE~Al~g~ 280 (373)
T PF02684_consen 208 AAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVI--IEGESYDAMAAADAALAAS-----GTATLEAALLGV 280 (373)
T ss_pred HHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEE--cCCchHHHHHhCcchhhcC-----CHHHHHHHHhCC
Confidence 77655 7888888765443333 44433322 222221 1256778899999999777 999999999999
Q ss_pred cEEEec-CC----------------CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHH
Q 016648 276 PVVGVR-AG----------------GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQ 328 (385)
Q Consensus 276 PvI~s~-~~----------------~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 328 (385)
|.|+.- .+ +++.++.+ +.-..=++-+..+++.+++++..+++|++.++....
T Consensus 281 P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~-~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~~~~~ 349 (373)
T PF02684_consen 281 PMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAG-REVVPELIQEDATPENIAAELLELLENPEKRKKQKE 349 (373)
T ss_pred CEEEEEcCcHHHHHHHHHhhcCCEeechhhhcC-CCcchhhhcccCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 998632 11 12222200 000011223345899999999999999876444333
No 110
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=99.30 E-value=9.4e-11 Score=104.47 Aligned_cols=275 Identities=15% Similarity=0.111 Sum_probs=153.0
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
....+.+.+.+.+||+|++++-....+++.+.+...++|+ .++|+-.-.+... .+ ..-......+-+-|+..++
T Consensus 55 ~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~alaA~~~~ipv-~HieaGlRs~d~~--~g---~~de~~R~~i~~la~lhf~ 128 (346)
T PF02350_consen 55 AIIELADVLEREKPDAVLVLGDRNEALAAALAAFYLNIPV-AHIEAGLRSGDRT--EG---MPDEINRHAIDKLAHLHFA 128 (346)
T ss_dssp HHHHHHHHHHHHT-SEEEEETTSHHHHHHHHHHHHTT-EE-EEES-----S-TT--SS---TTHHHHHHHHHHH-SEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCchHHHHHHHHHHhCCCE-EEecCCCCccccC--CC---Cchhhhhhhhhhhhhhhcc
Confidence 4567888999999999999998777788888889999995 4455421110000 00 1122244556688999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCC-CCCCCCCCCCChhh-HhhhcCCCCCCcEEEEEeeccc---cccHHHHH---H
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEM-RWRLSNGEPDKPLIVHVGRLGV---EKSLDFLK---R 202 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v-~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~G~~~~---~k~~~~l~---~ 202 (385)
.++..++.+.+.+. ++.+|.++.|.. |.-........... ........+++.+++..=+... ......+. +
T Consensus 129 ~t~~~~~~L~~~G~-~~~rI~~vG~~~~D~l~~~~~~~~~~~~~~~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~ 207 (346)
T PF02350_consen 129 PTEEARERLLQEGE-PPERIFVVGNPGIDALLQNKEEIEEKYKNSGILQDAPKPYILVTLHPVTNEDNPERLEQILEALK 207 (346)
T ss_dssp SSHHHHHHHHHTT---GGGEEE---HHHHHHHHHHHTTCC-HHHHHHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHH
T ss_pred CCHHHHHHHHhcCC-CCCeEEEEChHHHHHHHHhHHHHhhhhhhHHHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHH
Confidence 99999999999875 678999988753 22111000000000 0111111333444444433222 22234444 4
Q ss_pred HHHhCCCceEEEEeC--CccHHHHHHHHcC-CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHH-HHHhcCCcEE
Q 016648 203 VMDRLPEARIAFIGD--GPYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIPVV 278 (385)
Q Consensus 203 a~~~~~~~~l~i~G~--g~~~~~l~~~~~~-~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~-Ea~a~G~PvI 278 (385)
++.+.+++.+++... ......+.+.+.. .++++...+++.++..+++.|+++|.-| | .+. ||.++|+|+|
T Consensus 208 ~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~~~v~~~~~l~~~~~l~ll~~a~~vvgdS-----s-GI~eEa~~lg~P~v 281 (346)
T PF02350_consen 208 ALAERQNVPVIFPLHNNPRGSDIIIEKLKKYDNVRLIEPLGYEEYLSLLKNADLVVGDS-----S-GIQEEAPSLGKPVV 281 (346)
T ss_dssp HHHHHTTEEEEEE--S-HHHHHHHHHHHTT-TTEEEE----HHHHHHHHHHESEEEESS-----H-HHHHHGGGGT--EE
T ss_pred HHHhcCCCcEEEEecCCchHHHHHHHHhcccCCEEEECCCCHHHHHHHHhcceEEEEcC-----c-cHHHHHHHhCCeEE
Confidence 444446788888775 3334445444443 3899999999999999999999999544 4 566 9999999999
Q ss_pred Ee-cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 279 GV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 279 ~s-~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
.- +.+.-++.. ..+.+-+ +. .|.+++.+++.+++++.+.+..+.. ...-|.-...++++.
T Consensus 282 ~iR~~geRqe~r---~~~~nvl-v~-~~~~~I~~ai~~~l~~~~~~~~~~~----~~npYgdG~as~rI~ 342 (346)
T PF02350_consen 282 NIRDSGERQEGR---ERGSNVL-VG-TDPEAIIQAIEKALSDKDFYRKLKN----RPNPYGDGNASERIV 342 (346)
T ss_dssp ECSSS-S-HHHH---HTTSEEE-ET-SSHHHHHHHHHHHHH-HHHHHHHHC----S--TT-SS-HHHHHH
T ss_pred EecCCCCCHHHH---hhcceEE-eC-CCHHHHHHHHHHHHhChHHHHhhcc----CCCCCCCCcHHHHHH
Confidence 87 445556666 5565655 65 6999999999999987444433321 112255455555554
No 111
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=3.8e-10 Score=97.82 Aligned_cols=263 Identities=16% Similarity=0.143 Sum_probs=162.8
Q ss_pred cccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhC--CCEEEEEecCCCcccccccccccchhHHHHHHHHHHhC
Q 016648 48 SLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC--VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAA 125 (385)
Q Consensus 48 ~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~--~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 125 (385)
.....+++.+.+...+||++++-+.+.+.+......+..+ +|+|..+- |.-+ .|..+ ....+.+.+
T Consensus 70 llk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~---PsVW-----AWr~~----Ra~~i~~~~ 137 (381)
T COG0763 70 LLKIRRELVRYILANKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVS---PSVW-----AWRPK----RAVKIAKYV 137 (381)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEEC---ccee-----eechh----hHHHHHHHh
Confidence 3344556666777899999998776455444444445555 88775433 2211 11111 234577899
Q ss_pred CeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccc--cccHHHHHHH
Q 016648 126 DLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKRV 203 (385)
Q Consensus 126 d~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k~~~~l~~a 203 (385)
|++.+.-+...+.+.+.+. .++.+.+++-.+. +........+.++....+.+...+..|+-.. .+....+.++
T Consensus 138 D~lLailPFE~~~y~k~g~----~~~yVGHpl~d~i-~~~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a 212 (381)
T COG0763 138 DHLLAILPFEPAFYDKFGL----PCTYVGHPLADEI-PLLPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQA 212 (381)
T ss_pred hHeeeecCCCHHHHHhcCC----CeEEeCChhhhhc-cccccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHH
Confidence 9999999999999998765 4677777653332 1222334456666666666777888886533 3456677777
Q ss_pred HHhC----CCceEEEEeCCccHHHHHHHHcCCCe-EEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 204 MDRL----PEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 204 ~~~~----~~~~l~i~G~g~~~~~l~~~~~~~~i-~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
++++ |+.++++--.....+.+.....+.+. ...-.+...+-.+.+..||+.+..| |+..+|++.+|+|.|
T Consensus 213 ~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~al~aS-----GT~tLE~aL~g~P~V 287 (381)
T COG0763 213 AQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDGEKRKAFAAADAALAAS-----GTATLEAALAGTPMV 287 (381)
T ss_pred HHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCchHHHHHHHhhHHHHhc-----cHHHHHHHHhCCCEE
Confidence 7655 78999997766554444444332222 1222334467788999999998776 999999999999999
Q ss_pred Eec-CC----------------CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHH
Q 016648 279 GVR-AG----------------GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQE 333 (385)
Q Consensus 279 ~s~-~~----------------~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~ 333 (385)
++- .. +.+.++-. +.-..-++-+.-.++.+++++..++.|...++++.+...+.
T Consensus 288 v~Yk~~~it~~iak~lvk~~yisLpNIi~~-~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l 358 (381)
T COG0763 288 VAYKVKPITYFIAKRLVKLPYVSLPNILAG-REIVPELIQEDCTPENLARALEELLLNGDRREALKEKFREL 358 (381)
T ss_pred EEEeccHHHHHHHHHhccCCcccchHHhcC-CccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHH
Confidence 752 11 12222200 00000011123378999999999999986666665555444
No 112
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=99.29 E-value=1.4e-09 Score=94.56 Aligned_cols=275 Identities=19% Similarity=0.196 Sum_probs=174.1
Q ss_pred ccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeE
Q 016648 49 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 128 (385)
Q Consensus 49 ~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 128 (385)
-.....+.+++.+.+||+|.+|+-....+++.+++...++|+.-.--+...... . -.-....+..-.-+|.-
T Consensus 78 ~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvEAGlRt~~~--~------~PEE~NR~l~~~~S~~h 149 (383)
T COG0381 78 GNIIEGLSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVEAGLRTGDL--Y------FPEEINRRLTSHLSDLH 149 (383)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEecccccCCC--C------CcHHHHHHHHHHhhhhh
Confidence 345667889999999999999998777787788889999998643222211000 0 01111234455678999
Q ss_pred EEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCC---CCCChhhHhhhcCCCCCCcEEE-EEeecc-ccccHHHHHHH
Q 016648 129 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHP---RFRSSEMRWRLSNGEPDKPLIV-HVGRLG-VEKSLDFLKRV 203 (385)
Q Consensus 129 i~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~-~~G~~~-~~k~~~~l~~a 203 (385)
+++++..++.+.+.+. ++++|.++.|.+-...... ..........+ ....++.+++ ..=|-. ..+++..+.++
T Consensus 150 fapte~ar~nLl~EG~-~~~~IfvtGnt~iDal~~~~~~~~~~~~~~~~~-~~~~~~~~iLvT~HRreN~~~~~~~i~~a 227 (383)
T COG0381 150 FAPTEIARKNLLREGV-PEKRIFVTGNTVIDALLNTRDRVLEDSKILAKG-LDDKDKKYILVTAHRRENVGEPLEEICEA 227 (383)
T ss_pred cCChHHHHHHHHHcCC-CccceEEeCChHHHHHHHHHhhhccchhhHHhh-hccccCcEEEEEcchhhcccccHHHHHHH
Confidence 9999999999999875 6778999998752211111 11111111111 1233333444 333332 22667666665
Q ss_pred HHh----CCCceEEEEeC-CccHHHH--HHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCc
Q 016648 204 MDR----LPEARIAFIGD-GPYREEL--EKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 276 (385)
Q Consensus 204 ~~~----~~~~~l~i~G~-g~~~~~l--~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 276 (385)
+.+ .+++.++.--. .+...++ ..+....++.++.++...++..+++.|.+++.-| |.-.=||-..|+|
T Consensus 228 l~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDS-----GgiqEEAp~lg~P 302 (383)
T COG0381 228 LREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDS-----GGIQEEAPSLGKP 302 (383)
T ss_pred HHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHHHHHHHHhceEEEecC-----CchhhhHHhcCCc
Confidence 544 45666555332 2212222 2222334799999999999999999998888555 6677899999999
Q ss_pred EEEecC-CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 277 VVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 277 vI~s~~-~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
|++-.. ..-+|.+ +.| .-.++.. +.+.+.+++..++++++.+++|+...-. |.-.+..+++.
T Consensus 303 vl~lR~~TERPE~v---~ag-t~~lvg~-~~~~i~~~~~~ll~~~~~~~~m~~~~np----Ygdg~as~rIv 365 (383)
T COG0381 303 VLVLRDTTERPEGV---EAG-TNILVGT-DEENILDAATELLEDEEFYERMSNAKNP----YGDGNASERIV 365 (383)
T ss_pred EEeeccCCCCccce---ecC-ceEEeCc-cHHHHHHHHHHHhhChHHHHHHhcccCC----CcCcchHHHHH
Confidence 998754 4556665 333 4445544 7799999999999999988887664433 44444455554
No 113
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.26 E-value=8.8e-10 Score=102.10 Aligned_cols=261 Identities=12% Similarity=0.084 Sum_probs=160.2
Q ss_pred ccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCC--CEEEEEecCCCcccccccccccchhHHHHHHHHHHhCC
Q 016648 49 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCV--PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 126 (385)
Q Consensus 49 ~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~--p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 126 (385)
....+++.+.+++.+||++++-+.+.+.+.....+|..|+ |+++.+- |.-. .|... ..+.+.+.+|
T Consensus 296 ~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVs---PqVW-----AWR~~----Rikki~k~vD 363 (608)
T PRK01021 296 WYRYRKLYKTILKTNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVC---PSIW-----AWRPK----RKTILEKYLD 363 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEEC---ccce-----eeCcc----hHHHHHHHhh
Confidence 3345667778888999999997764555444455566785 8876443 2211 11111 3456778899
Q ss_pred eEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccc--cccHHHHHHHH
Q 016648 127 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKRVM 204 (385)
Q Consensus 127 ~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k~~~~l~~a~ 204 (385)
.+++.-+...+.+++.+. ++..+.|++-.. ........+.+.+....++++.+.+..|+-.. .+.+..+++++
T Consensus 364 ~ll~IfPFE~~~y~~~gv----~v~yVGHPL~d~-i~~~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa 438 (608)
T PRK01021 364 LLLLILPFEQNLFKDSPL----RTVYLGHPLVET-ISSFSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAF 438 (608)
T ss_pred hheecCccCHHHHHhcCC----CeEEECCcHHhh-cccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 999999999999998654 677777776322 22222233344444443344556677885532 35678889998
Q ss_pred H--hC-CCceEEEEeCCc-cHHHHHHHHcCCC---eEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcE
Q 016648 205 D--RL-PEARIAFIGDGP-YREELEKMFTGMP---AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 277 (385)
Q Consensus 205 ~--~~-~~~~l~i~G~g~-~~~~l~~~~~~~~---i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 277 (385)
+ .+ ++.++++....+ ..+.+++...+.+ +.+.. .++-.++|+.||+.+..| |++.+|++.+|+|.
T Consensus 439 ~~~~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~---~~~~~~~m~aaD~aLaaS-----GTaTLEaAL~g~Pm 510 (608)
T PRK01021 439 LASSLASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIVP---SQFRYELMRECDCALAKC-----GTIVLETALNQTPT 510 (608)
T ss_pred HHHHhccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEec---CcchHHHHHhcCeeeecC-----CHHHHHHHHhCCCE
Confidence 8 65 567776654332 3455666554322 23221 123468999999999877 99999999999999
Q ss_pred EEe-cCC------------------CCCcccccCCCCCeeEe--eCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHh
Q 016648 278 VGV-RAG------------------GIPDIIPEDQDGKIGYL--FNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 336 (385)
Q Consensus 278 I~s-~~~------------------~~~e~~~~~~~~~~g~~--~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~ 336 (385)
|+. ..+ +++.++.+ ++-..-++ -+..+++.+++++ ++++|++.++++.+...+..++
T Consensus 511 VV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIag-r~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~ 588 (608)
T PRK01021 511 IVTCQLRPFDTFLAKYIFKIILPAYSLPNIILG-STIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQA 588 (608)
T ss_pred EEEEecCHHHHHHHHHHHhccCCeeehhHHhcC-CCcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHH
Confidence 863 221 11111100 00001122 1344899999996 8888888777776666555444
No 114
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=99.23 E-value=1.6e-11 Score=99.36 Aligned_cols=114 Identities=22% Similarity=0.248 Sum_probs=70.6
Q ss_pred ccccccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCc-ccccccccccchhHHHHHHHHHH
Q 016648 45 VPLSLALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPV-YIPRYTFSWLVKPMWLVIKFLHR 123 (385)
Q Consensus 45 ~~~~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 123 (385)
....+.....+.+.+++.+||+||+|.+......... .+ ++|++++.|+.... ..................+...+
T Consensus 62 ~~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~-~~--~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (177)
T PF13439_consen 62 FLRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIALLA-CR--KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYK 138 (177)
T ss_dssp --HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHHHHH-HH--CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHC
T ss_pred cchhHHHHHHHHHHHHHcCCCeEEecccchhHHHHHh-cc--CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHh
Confidence 3344555678999999999999999987444333222 22 99999999996631 11111112222223334556688
Q ss_pred hCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCC
Q 016648 124 AADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESF 162 (385)
Q Consensus 124 ~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~ 162 (385)
.+|.++++|+.+++.+.+ ++.++.++.+||||+|.+.|
T Consensus 139 ~~~~ii~vS~~~~~~l~~-~~~~~~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 139 KADRIIAVSESTKDELIK-FGIPPEKIHVIYNGIDTDRF 176 (177)
T ss_dssp CSSEEEESSHHHHHHHHH-HT--SS-EEE----B-CCCH
T ss_pred cCCEEEEECHHHHHHHHH-hCCcccCCEEEECCccHHHc
Confidence 999999999999999999 66788999999999999876
No 115
>COG4641 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.21 E-value=1.9e-09 Score=92.91 Aligned_cols=277 Identities=16% Similarity=0.146 Sum_probs=181.0
Q ss_pred HHHHHhhccCCCEEEeCCCc-----hhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeE
Q 016648 54 RIISEVARFKPDIIHASSPG-----IMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 128 (385)
Q Consensus 54 ~l~~~i~~~~pDiI~~~~~~-----~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 128 (385)
.....++.++||+|+.-... ......+..++..++|++++.-+.. ......... ....+.+..+...|.|
T Consensus 68 ~~~~~i~~fk~d~iv~~~~~~~~~~~~~~~~~a~l~~~~l~~~~w~te~p-~~~~~~~~~----~~~~~~~~~l~~fd~v 142 (373)
T COG4641 68 ESLLYIREFKPDIIVNMSGDDQPDEESTIDLWAWLKRKCLPVIVWYTEDP-YDTDIFSQV----AEEQLARRPLFIFDNV 142 (373)
T ss_pred HHHHHHHhcCCcEEEEecccccccceehHHHHHHhhcCCcceEEEEeccc-hhhhhhhhh----hHHHhhccccchhhhh
Confidence 45567788999999986432 2223333445667788777665542 211111100 0000111122334456
Q ss_pred EEcChhH-HHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHh-
Q 016648 129 LVPSVAI-GKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR- 206 (385)
Q Consensus 129 i~~s~~~-~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~- 206 (385)
++.++.. ++.+.+.++ ..++..+++++|.+.+.+.+.. ..-.-.+.++|+..+. ..+.+-+++..
T Consensus 143 ~~~g~~l~~~~yyq~~~--~~~~~~~~~a~d~~~~~~i~~d----------a~~~~dL~~ign~~pD-r~e~~ke~~~~p 209 (373)
T COG4641 143 LSFGGGLVANKYYQEGG--ARNCYYLPWAVDDSLFHPIPPD----------ASYDVDLNLIGNPYPD-RVEEIKEFFVEP 209 (373)
T ss_pred hhccchHHHHHHHHhhc--ccceeccCccCCchhcccCCcc----------ccceeeeEEecCCCcc-HHHHHHHHhhcc
Confidence 6666666 566654443 4578889999999888776431 1123368899987665 23333333322
Q ss_pred ---C-CCceEEEEeCCccHHHHHHHHcCCCeEEecccCh-HHHHHHHHhCcEEEEcCC---CCC---CcHHHHHHHhcCC
Q 016648 207 ---L-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLG-EELSQAYASGDVFVMPSE---SET---LGLVVLEAMSSGI 275 (385)
Q Consensus 207 ---~-~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~-~~~~~~~~~adi~v~ps~---~e~---~~~~~~Ea~a~G~ 275 (385)
+ -+-++...|.+ +...+....-..++...|+++. ..++..++..|+.+.-++ .++ .++.+.|+++||.
T Consensus 210 s~kl~v~rr~~~~g~~-y~~~~~~~~~~~~~~yIg~~~~~~~v~~~~~~~~~~~n~~r~~~~~~l~~~~~RvFeiagc~~ 288 (373)
T COG4641 210 SFKLMVDRRFYVLGPR-YPDDIWGRTWEPNVQYIGYYNPKDGVPNAFKRDDVTLNINRASIANALFSPTNRVFEIAGCGG 288 (373)
T ss_pred chhhhccceeeecCCc-cchhhhcccccchhhhhhccCccchhhhcccccceeeeecHHHHHhhcCCchhhHHHHhhcCC
Confidence 1 12445555644 2222222222347788888888 889999999999887654 222 3789999999999
Q ss_pred cEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHH
Q 016648 276 PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 276 PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~~ 354 (385)
|.+++...++..++ .+|+.-+++. |..++.+.+..++..+++++++++.+.+.+ ..|+.+..+.++++ ...++
T Consensus 289 ~liT~~~~~~e~~f---~pgk~~iv~~--d~kdl~~~~~yll~h~~erkeiae~~ye~V~~~ht~~~r~~~~~~-~i~sI 362 (373)
T COG4641 289 FLITDYWKDLEKFF---KPGKDIIVYQ--DSKDLKEKLKYLLNHPDERKEIAECAYERVLARHTYEERIFKLLN-EIASI 362 (373)
T ss_pred ccccccHHHHHHhc---CCchheEEec--CHHHHHHHHHHHhcCcchHHHHHHhhHHHHHHhccHHHHHHHHHH-HHHHH
Confidence 99999999999999 7787777765 999999999999999999999999999997 56999998888874 44444
Q ss_pred H
Q 016648 355 I 355 (385)
Q Consensus 355 ~ 355 (385)
.
T Consensus 363 ~ 363 (373)
T COG4641 363 N 363 (373)
T ss_pred H
Confidence 3
No 116
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=99.19 E-value=7.6e-11 Score=93.63 Aligned_cols=114 Identities=23% Similarity=0.275 Sum_probs=69.3
Q ss_pred cCCCCcccccccccchHHHHHHh--hccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhH
Q 016648 37 FPCPWYQKVPLSLALSPRIISEV--ARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPM 114 (385)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~l~~~i--~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~ 114 (385)
++.+..............+.+.+ ++.+||+||+|++. ..+.+..+++..++|+|+++|+...... ..+....+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~~~~~-~~~~~~~~~~~~~~p~v~~~h~~~~~~~----~~~~~~~~ 119 (160)
T PF13579_consen 45 LPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHAHSPT-AGLVAALARRRRGIPLVVTVHGTLFRRG----SRWKRRLY 119 (160)
T ss_dssp E--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEEEHHH-HHHHHHHHHHHHT--EEEE-SS-T----------HHHHHH
T ss_pred ccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEecccc-hhHHHHHHHHccCCcEEEEECCCchhhc----cchhhHHH
Confidence 33343333344555677888888 89999999999953 4444455555789999999998542211 23444455
Q ss_pred HHHHHHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCC
Q 016648 115 WLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 156 (385)
Q Consensus 115 ~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~ 156 (385)
..+++..++.||.++++|+.+++.+.+.+ .+.+++.+||||
T Consensus 120 ~~~~~~~~~~ad~vi~~S~~~~~~l~~~g-~~~~ri~vipnG 160 (160)
T PF13579_consen 120 RWLERRLLRRADRVIVVSEAMRRYLRRYG-VPPDRIHVIPNG 160 (160)
T ss_dssp HHHHHHHHHH-SEEEESSHHHHHHHHHH----GGGEEE----
T ss_pred HHHHHHHHhcCCEEEECCHHHHHHHHHhC-CCCCcEEEeCcC
Confidence 67789999999999999999999999954 588999999997
No 117
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.13 E-value=3.1e-09 Score=94.71 Aligned_cols=226 Identities=15% Similarity=0.135 Sum_probs=127.8
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHH----HHhCCe
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFL----HRAADL 127 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ad~ 127 (385)
.+++.+.+++++||+|++..... ....++..|+|++...|........ ............+.+.. +..++.
T Consensus 83 ~~~~~~~l~~~~pDlVIsD~~~~----~~~aa~~~giP~i~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (318)
T PF13528_consen 83 IRREIRWLREFRPDLVISDFYPL----AALAARRAGIPVIVISNQYWFLHPN-FWLPWDQDFGRLIERYIDRYHFPPADR 157 (318)
T ss_pred HHHHHHHHHhcCCCEEEEcChHH----HHHHHHhcCCCEEEEEehHHccccc-CCcchhhhHHHHHHHhhhhccCCcccc
Confidence 34566778889999999986533 2346688999998776664322111 01111111111111111 222333
Q ss_pred EEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC
Q 016648 128 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 207 (385)
Q Consensus 128 ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~ 207 (385)
.+..+.... . .+..+..+++..+....... ...+.+.+++++|..+.. .++++++.+
T Consensus 158 ~l~~~~~~~-~------~~~~~~~~~~p~~~~~~~~~------------~~~~~~~iLv~~gg~~~~----~~~~~l~~~ 214 (318)
T PF13528_consen 158 RLALSFYPP-L------PPFFRVPFVGPIIRPEIREL------------PPEDEPKILVYFGGGGPG----DLIEALKAL 214 (318)
T ss_pred eecCCcccc-c------cccccccccCchhccccccc------------CCCCCCEEEEEeCCCcHH----HHHHHHHhC
Confidence 333322200 0 00111222221111111100 012356689999987666 778899999
Q ss_pred CCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCc
Q 016648 208 PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 287 (385)
Q Consensus 208 ~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e 287 (385)
++..++++|.+... ....|+.+.++.. +++.++|+.||++|.- +.-+++.|++++|+|+|+-...+..|
T Consensus 215 ~~~~~~v~g~~~~~------~~~~ni~~~~~~~-~~~~~~m~~ad~vIs~----~G~~t~~Ea~~~g~P~l~ip~~~~~E 283 (318)
T PF13528_consen 215 PDYQFIVFGPNAAD------PRPGNIHVRPFST-PDFAELMAAADLVISK----GGYTTISEALALGKPALVIPRPGQDE 283 (318)
T ss_pred CCCeEEEEcCCccc------ccCCCEEEeecCh-HHHHHHHHhCCEEEEC----CCHHHHHHHHHcCCCEEEEeCCCCch
Confidence 99999999866311 1155888887642 7899999999999944 33566999999999999887755333
Q ss_pred ccc---cCCCCCeeEeeC--CCCHHHHHHHHhHh
Q 016648 288 IIP---EDQDGKIGYLFN--PGDLDDCLSKLEPL 316 (385)
Q Consensus 288 ~~~---~~~~~~~g~~~~--~~~~~~l~~~i~~l 316 (385)
... ..++.+.|...+ .-+++.+.+.|+++
T Consensus 284 Q~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 284 QEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred HHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 210 003344555544 33678888877654
No 118
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.06 E-value=5e-08 Score=89.97 Aligned_cols=149 Identities=16% Similarity=0.096 Sum_probs=95.5
Q ss_pred CCCcEEEEEeeccc---cccHHHHHHHHHhCCCceE-EEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEE
Q 016648 180 PDKPLIVHVGRLGV---EKSLDFLKRVMDRLPEARI-AFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 255 (385)
Q Consensus 180 ~~~~~i~~~G~~~~---~k~~~~l~~a~~~~~~~~l-~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v 255 (385)
.++.+++..|+... .+....++++++.. +.++ +.+|...... .....|+.+.++++.. .+|..||++|
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~-~~~~i~~~g~~~~~~----~~~~~~v~~~~~~p~~---~ll~~~d~~I 309 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATL-GQRAILSLGWGGLGA----EDLPDNVRVVDFVPHD---WLLPRCAAVV 309 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHc-CCeEEEEccCccccc----cCCCCceEEeCCCCHH---HHhhhhheee
Confidence 34567778888743 34566777888776 4454 4456443221 1223589999998655 4588899999
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHH
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQA 329 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~ 329 (385)
..|..+++.||+++|+|+|+....+ ..+.+ .....|...+.. +.+++.+++.++++++ .+++..+.
T Consensus 310 ----~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~---~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~~~~~~~ 381 (401)
T cd03784 310 ----HHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARV---AELGAGPALDPRELTAERLAAALRRLLDPP-SRRRAAAL 381 (401)
T ss_pred ----ecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHH---HHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HHHHHHHH
Confidence 4555789999999999999886553 23334 344566665544 7899999999999853 34444444
Q ss_pred HHHHHHhCCHHHHHH
Q 016648 330 ARQEMEKYDWRAATR 344 (385)
Q Consensus 330 a~~~~~~~s~~~~~~ 344 (385)
+++..+.-..+..++
T Consensus 382 ~~~~~~~~g~~~~~~ 396 (401)
T cd03784 382 LRRIREEDGVPSAAD 396 (401)
T ss_pred HHHHHhccCHHHHHH
Confidence 433322334444443
No 119
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.06 E-value=2.1e-08 Score=89.29 Aligned_cols=229 Identities=13% Similarity=0.172 Sum_probs=123.9
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
...+..+++++.+||+|++..... +...++..++|++...|.....+ +.. ........+.....+...++.++.
T Consensus 81 ~~~~~~~~l~~~~pDlVi~d~~~~----~~~aA~~~~iP~i~i~~q~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 154 (321)
T TIGR00661 81 AIRREINIIREYNPDLIISDFEYS----TVVAAKLLKIPVICISNQNYTRY-PLK-TDLIVYPTMAALRIFNERCERFIV 154 (321)
T ss_pred HHHHHHHHHHhcCCCEEEECCchH----HHHHHHhcCCCEEEEecchhhcC-Ccc-cchhHHHHHHHHHHhccccceEee
Confidence 344567888999999999996432 24467889999996656432211 111 011111111222333334444443
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCCCc
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEA 210 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~ 210 (385)
.+..... .+. |..+. ... .........+. ...++..++++.|. .+...+++++++.+++
T Consensus 155 ~~~~~~~-----~~~--------p~~~~--~~~-~~~~~~~~~~~-~~~~~~~iLv~~g~----~~~~~l~~~l~~~~~~ 213 (321)
T TIGR00661 155 PDYPFPY-----TIC--------PKIIK--NME-GPLIRYDVDDV-DNYGEDYILVYIGF----EYRYKILELLGKIANV 213 (321)
T ss_pred ecCCCCC-----CCC--------ccccc--cCC-Ccccchhhhcc-ccCCCCcEEEECCc----CCHHHHHHHHHhCCCe
Confidence 3211000 000 10000 000 00000000001 11223445666554 3456778888888876
Q ss_pred eEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCc---
Q 016648 211 RIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD--- 287 (385)
Q Consensus 211 ~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e--- 287 (385)
.+++.+..... ..+ ..++.+.++.+ +++.++|..||++|.-+ ...++.||+++|+|+|..+..+..|
T Consensus 214 ~~i~~~~~~~~---~~~--~~~v~~~~~~~-~~~~~~l~~ad~vI~~~----G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~ 283 (321)
T TIGR00661 214 KFVCYSYEVAK---NSY--NENVEIRRITT-DNFKELIKNAELVITHG----GFSLISEALSLGKPLIVIPDLGQFEQGN 283 (321)
T ss_pred EEEEeCCCCCc---ccc--CCCEEEEECCh-HHHHHHHHhCCEEEECC----ChHHHHHHHHcCCCEEEEcCCCcccHHH
Confidence 65443322111 111 34788888876 78999999999999654 3467999999999999988765333
Q ss_pred ---ccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCH
Q 016648 288 ---IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320 (385)
Q Consensus 288 ---~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~ 320 (385)
.+ .+.+.|...+..+. ++.+++...++|+
T Consensus 284 na~~l---~~~g~~~~l~~~~~-~~~~~~~~~~~~~ 315 (321)
T TIGR00661 284 NAVKL---EDLGCGIALEYKEL-RLLEAILDIRNMK 315 (321)
T ss_pred HHHHH---HHCCCEEEcChhhH-HHHHHHHhccccc
Confidence 24 45566777776666 5555665555544
No 120
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.05 E-value=1.1e-07 Score=87.35 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=98.1
Q ss_pred CCcEEEEEeeccccc--cHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcC
Q 016648 181 DKPLIVHVGRLGVEK--SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 258 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k--~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps 258 (385)
...+++..|+..... -++.+++++...+...++..|.+...+.+... ..++.+.+++++. +++..||++|..+
T Consensus 225 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~--~~~v~~~~~~p~~---~ll~~~~~~I~hg 299 (392)
T TIGR01426 225 RPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGEL--PPNVEVRQWVPQL---EILKKADAFITHG 299 (392)
T ss_pred CCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccC--CCCeEEeCCCCHH---HHHhhCCEEEECC
Confidence 345677788863332 34556667666543334456655443333322 3479999999764 5689999999543
Q ss_pred CCCCCcHHHHHHHhcCCcEEEecCCCC----CcccccCCCCCeeEeeCC--CCHHHHHHHHhHhhcCHHHHHHHHHHHHH
Q 016648 259 ESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAARQ 332 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s~~~~~----~e~~~~~~~~~~g~~~~~--~~~~~l~~~i~~ll~~~~~~~~~~~~a~~ 332 (385)
...++.||+++|+|+|+....+- .+.+ .....|..... -+.++++++|.++++|++.++.+.+-+..
T Consensus 300 ----G~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l---~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~~ 372 (392)
T TIGR01426 300 ----GMNSTMEALFNGVPMVAVPQGADQPMTARRI---AELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAE 372 (392)
T ss_pred ----CchHHHHHHHhCCCEEecCCcccHHHHHHHH---HHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35689999999999998654432 2233 33445655543 36899999999999998765555444433
Q ss_pred HHHhCCHHHHHHHHH
Q 016648 333 EMEKYDWRAATRTIR 347 (385)
Q Consensus 333 ~~~~~s~~~~~~~~~ 347 (385)
....-..+..++.+.
T Consensus 373 ~~~~~~~~~aa~~i~ 387 (392)
T TIGR01426 373 IREAGGARRAADEIE 387 (392)
T ss_pred HHHcCCHHHHHHHHH
Confidence 334456666665554
No 121
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.04 E-value=2.5e-08 Score=86.50 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=117.3
Q ss_pred HHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcC
Q 016648 53 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPS 132 (385)
Q Consensus 53 ~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s 132 (385)
..+.+.+++.+||+|++.++....-. ....+..+.+ ++.+.|..... ..+|.++..+
T Consensus 70 ~~~~~~l~~~~~d~vV~D~y~~~~~~-~~~~k~~~~~-l~~iDD~~~~~---------------------~~~D~vin~~ 126 (279)
T TIGR03590 70 LELINLLEEEKFDILIVDHYGLDADW-EKLIKEFGRK-ILVIDDLADRP---------------------HDCDLLLDQN 126 (279)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCHHH-HHHHHHhCCe-EEEEecCCCCC---------------------cCCCEEEeCC
Confidence 35888899999999999886433321 1122333444 44445532110 1589898887
Q ss_pred hhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC-CCce
Q 016648 133 VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEAR 211 (385)
Q Consensus 133 ~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~-~~~~ 211 (385)
.. .+...-....++....+. |.+--...+..... ..+.....+.+.+++++|..+..+....+++++.+. ++.+
T Consensus 127 ~~-~~~~~y~~~~~~~~~~l~--G~~Y~~lr~eF~~~--~~~~~~~~~~~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~ 201 (279)
T TIGR03590 127 LG-ADASDYQGLVPANCRLLL--GPSYALLREEFYQL--ATANKRRKPLRRVLVSFGGADPDNLTLKLLSALAESQINIS 201 (279)
T ss_pred CC-cCHhHhcccCcCCCeEEe--cchHHhhhHHHHHh--hHhhhcccccCeEEEEeCCcCCcCHHHHHHHHHhccccCce
Confidence 65 333221111233333333 33211111111000 000000112345788999888877677888888776 3455
Q ss_pred EE-EEeCC-ccHHHHHHHHcC-CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 212 IA-FIGDG-PYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 212 l~-i~G~g-~~~~~l~~~~~~-~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
+. ++|.+ +..+++++.... .++++.+++ +++.++|+.||++|.. .|.++.|++++|+|+|+....
T Consensus 202 i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~--~~m~~lm~~aDl~Is~-----~G~T~~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 202 ITLVTGSSNPNLDELKKFAKEYPNIILFIDV--ENMAELMNEADLAIGA-----AGSTSWERCCLGLPSLAICLA 269 (279)
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCEEEEeCH--HHHHHHHHHCCEEEEC-----CchHHHHHHHcCCCEEEEEec
Confidence 44 56654 455666666543 479999998 8999999999999974 368999999999999976553
No 122
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=98.96 E-value=6.3e-07 Score=76.98 Aligned_cols=223 Identities=10% Similarity=0.060 Sum_probs=134.9
Q ss_pred hHHHHHHhhccCCCEEEeCCCchh-HHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 52 SPRIISEVARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
...+.+..+..+.+-+++|+-... .+.+++..+....++.+.+.+-. .. ....++..+.+..+.+...++...|++
T Consensus 67 a~avi~~a~~~r~~kff~HGqFn~~lwlaLl~g~~~~~k~~WhIWGaD--LY-e~~~~~k~rlfy~lRr~aq~rvg~V~a 143 (360)
T PF07429_consen 67 AQAVIAKAKADRADKFFLHGQFNPWLWLALLFGKIKLKKCYWHIWGAD--LY-EDSRSLKFRLFYFLRRLAQKRVGHVFA 143 (360)
T ss_pred HHHHHHHHhhCccceEEEeccCcHHHHHHHHcCCccccceEEEEeCch--hh-ccccccchhHHHHHHHHHHhhcCeEEE
Confidence 444555556678899999986333 33333333444455666555522 11 122344455556677888888888876
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeec-cccccHHHHHHHHHhC--
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRL-- 207 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~-~~~k~~~~l~~a~~~~-- 207 (385)
.+.....+++.++..+......|.-++........ ....+...-+.+|+- ++.-+...+++++++.
T Consensus 144 -t~GDl~~~~q~~~~~~~~~lyfPt~m~~~~~~~~~----------~~~~~~~ltILvGNSgd~sNnHieaL~~L~~~~~ 212 (360)
T PF07429_consen 144 -TRGDLAYFQQRYPRVPASLLYFPTRMDPALTLSEK----------NKKNKGKLTILVGNSGDPSNNHIEALEALKQQFG 212 (360)
T ss_pred -EcchHHHHHHHcCCCCceEEEcCCCCchhhhcccc----------ccCCCCceEEEEcCCCCCCccHHHHHHHHHHhcC
Confidence 56667777777653333444444434433211110 012233445555654 5666677777777765
Q ss_pred CCceEEE-EeCC----ccHHHHHHHHcC----CCeE-EecccChHHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCc
Q 016648 208 PEARIAF-IGDG----PYREELEKMFTG----MPAV-FTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIP 276 (385)
Q Consensus 208 ~~~~l~i-~G~g----~~~~~l~~~~~~----~~i~-~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~P 276 (385)
.++++++ .|-| .+.+++.+...+ .++. +..+++.+|..++++.||++++... ..|.|+..+ .+.+|+|
T Consensus 213 ~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~l-Ll~~G~~ 291 (360)
T PF07429_consen 213 DDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICL-LLQLGKK 291 (360)
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHH-HHHcCCe
Confidence 4677766 3433 244455555443 2565 4679999999999999999999865 567776655 9999999
Q ss_pred EEEecCCCCCccc
Q 016648 277 VVGVRAGGIPDII 289 (385)
Q Consensus 277 vI~s~~~~~~e~~ 289 (385)
|+.+.....-..+
T Consensus 292 v~L~~~np~~~~l 304 (360)
T PF07429_consen 292 VFLSRDNPFWQDL 304 (360)
T ss_pred EEEecCChHHHHH
Confidence 9988665554444
No 123
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=98.90 E-value=3.6e-07 Score=77.34 Aligned_cols=273 Identities=12% Similarity=0.078 Sum_probs=156.7
Q ss_pred chHHHHHHhhccCCCEEEeCCCchh-HHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
+.+.+....+..+.+-+++|+-... .+.+++.-+..-.++.+.+.+ .+.. .....+..+.+..+.+...++..+|+
T Consensus 27 la~avi~~a~~~r~~rff~HGqFn~~lwlall~g~~~~~q~yWhiWG--aDLY-e~~~~lk~rlfy~lRR~aq~rvg~v~ 103 (322)
T PRK02797 27 LAEAVIAKAKANRAQRFFLHGQFNPTLWLALLSGKIKPKQFYWHIWG--ADLY-EESKGLKFRLFYPLRRLAQKRVGHVF 103 (322)
T ss_pred HHHHHHHHHhhCccceEEEecCCCHHHHHHHHhCCcCccceEEEEEC--hhhh-hcccchhHHHHHHHHHHHHhhcCeEE
Confidence 4556666666688899999986332 233333323333345554444 2222 22245556666777888999999999
Q ss_pred EcChhHHHH-HHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeec-cccccHHHHHHHHHhC
Q 016648 130 VPSVAIGKD-LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRL 207 (385)
Q Consensus 130 ~~s~~~~~~-~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~-~~~k~~~~l~~a~~~~ 207 (385)
+ ....... .++.+.++ .+....|.-+++....... . ..++....+.+|+- ++..+...+++++++.
T Consensus 104 a-trGD~~~~a~~~~~v~-~~llyfpt~m~~~l~~~~~---------~-~~~~~~~tIlvGNSgd~SN~Hie~L~~l~~~ 171 (322)
T PRK02797 104 A-TRGDLSYFAQRHPKVP-GSLLYFPTRMDPSLNTMAN---------D-RQRAGKMTILVGNSGDRSNRHIEALRALHQQ 171 (322)
T ss_pred E-ecchHHHHHHhcCCCC-ccEEecCCcchhhhccccc---------c-ccCCCceEEEEeCCCCCcccHHHHHHHHHHH
Confidence 9 5555555 45554443 3443333322221111110 0 11223455556654 6666777888888766
Q ss_pred --CCceEEE-Ee----CCccHHHHHHHHcC----CC-eEEecccChHHHHHHHHhCcEEEEcC-CCCCCcHHHHHHHhcC
Q 016648 208 --PEARIAF-IG----DGPYREELEKMFTG----MP-AVFTGMLLGEELSQAYASGDVFVMPS-ESETLGLVVLEAMSSG 274 (385)
Q Consensus 208 --~~~~l~i-~G----~g~~~~~l~~~~~~----~~-i~~~g~~~~~~~~~~~~~adi~v~ps-~~e~~~~~~~Ea~a~G 274 (385)
.++++++ .| +..+.+++.+...+ .+ ..+..+++.+|...+++.||+.++.- +..|.|+..+ .+.+|
T Consensus 172 ~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~l-Li~~G 250 (322)
T PRK02797 172 FGDNVKIIVPMGYPANNQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCL-LIQLG 250 (322)
T ss_pred hCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHH-HHHCC
Confidence 4667766 33 22344555555443 24 34678899999999999999998875 4678887665 99999
Q ss_pred CcEEEe-cCCCCCcccccCCCCCeeEeeCCCCH--HHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 016648 275 IPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDL--DDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 351 (385)
Q Consensus 275 ~PvI~s-~~~~~~e~~~~~~~~~~g~~~~~~~~--~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy 351 (385)
+||+.+ +.+...++. +.+..- +++.++. ..+.+ ..+.+....++.+. |+.++..+.+. .++
T Consensus 251 ~~v~l~r~n~fwqdl~---e~gv~V-lf~~d~L~~~~v~e----------~~rql~~~dk~~I~-Ff~pn~~~~W~-~~l 314 (322)
T PRK02797 251 KPVVLSRDNPFWQDLT---EQGLPV-LFTGDDLDEDIVRE----------AQRQLASVDKNIIA-FFSPNYLQGWR-NAL 314 (322)
T ss_pred CcEEEecCCchHHHHH---hCCCeE-EecCCcccHHHHHH----------HHHHHHhhCcceee-ecCHhHHHHHH-HHH
Confidence 999877 455666655 444433 3443332 11111 12223333333333 88888888886 566
Q ss_pred HHHH
Q 016648 352 NAAI 355 (385)
Q Consensus 352 ~~~~ 355 (385)
+.+.
T Consensus 315 ~~~~ 318 (322)
T PRK02797 315 AIAA 318 (322)
T ss_pred HHhh
Confidence 6553
No 124
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.84 E-value=1.9e-07 Score=84.89 Aligned_cols=172 Identities=16% Similarity=0.230 Sum_probs=108.7
Q ss_pred CCCCcEEEEEeecccc--ccHHHHHHHHHhCCCceEEEEeCCc-cHHHHHHHHcCC-----CeEEecccChHHHHHHHHh
Q 016648 179 EPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAFIGDGP-YREELEKMFTGM-----PAVFTGMLLGEELSQAYAS 250 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~~--k~~~~l~~a~~~~~~~~l~i~G~g~-~~~~l~~~~~~~-----~i~~~g~~~~~~~~~~~~~ 250 (385)
+++.++++.+.++.+. .-++...+++++.|+.++.+...+. ..+.+.+...+. ++.|.+..+.++....++.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~ 361 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQL 361 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhh
Confidence 4566777777776543 3366677788888999998876443 234444444322 5899999988999999999
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccC---CCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHH
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED---QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 327 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~---~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 327 (385)
+|+++=+.. -+.+++.+||+.+|+|||+-....+..-+... .-|...++.. |.++.++...++.+|++.++.++
T Consensus 362 ~DI~LDT~p-~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~--s~~eYv~~Av~La~D~~~l~~lR 438 (468)
T PF13844_consen 362 ADICLDTFP-YNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD--SEEEYVEIAVRLATDPERLRALR 438 (468)
T ss_dssp -SEEE--SS-S--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S--SHHHHHHHHHHHHH-HHHHHHHH
T ss_pred CCEEeeCCC-CCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC--CHHHHHHHHHHHhCCHHHHHHHH
Confidence 999997643 34578999999999999986543332211000 0122334443 89999999999999999999999
Q ss_pred HHHHHHH-Hh--CCHHHHHHHHHHHHHHHH
Q 016648 328 QAARQEM-EK--YDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 328 ~~a~~~~-~~--~s~~~~~~~~~~~iy~~~ 354 (385)
++-++.. +. |+....++.+. +.|+++
T Consensus 439 ~~Lr~~~~~SpLfd~~~~ar~lE-~a~~~m 467 (468)
T PF13844_consen 439 AKLRDRRSKSPLFDPKRFARNLE-AAYRQM 467 (468)
T ss_dssp HHHHHHHHHSGGG-HHHHHHHHH-HHHHHH
T ss_pred HHHHHHHhhCCCCCHHHHHHHHH-HHHHHh
Confidence 9988775 32 99999999995 688764
No 125
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.82 E-value=4.4e-07 Score=79.79 Aligned_cols=228 Identities=18% Similarity=0.205 Sum_probs=134.1
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
...++.+.+++++||++++++... +...+...|+|.|....+..... ..+..+..||.+++
T Consensus 71 R~~~l~~~~~~~~pDv~is~~s~~----a~~va~~lgiP~I~f~D~e~a~~---------------~~~Lt~Pla~~i~~ 131 (335)
T PF04007_consen 71 RQYKLLKLIKKFKPDVAISFGSPE----AARVAFGLGIPSIVFNDTEHAIA---------------QNRLTLPLADVIIT 131 (335)
T ss_pred HHHHHHHHHHhhCCCEEEecCcHH----HHHHHHHhCCCeEEEecCchhhc---------------cceeehhcCCeeEC
Confidence 355788888999999999886422 33466788999988665532111 12345678999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCC-CCCCCChhhHhhhcCCCCCCcEEEEEeecc-----cccc-HHHHHHH
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESF-HPRFRSSEMRWRLSNGEPDKPLIVHVGRLG-----VEKS-LDFLKRV 203 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~-----~~k~-~~~l~~a 203 (385)
+...-.+.+.+.+. . +++. -++|++...+ .+-........++.. .+++.+++=...+. ..++ +..+++.
T Consensus 132 P~~~~~~~~~~~G~-~-~~i~-~y~G~~E~ayl~~F~Pd~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~ 207 (335)
T PF04007_consen 132 PEAIPKEFLKRFGA-K-NQIR-TYNGYKELAYLHPFKPDPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEE 207 (335)
T ss_pred CcccCHHHHHhcCC-c-CCEE-EECCeeeEEeecCCCCChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHH
Confidence 88776666666543 2 2332 2567665332 221222344444442 23333333222211 1112 4455555
Q ss_pred HHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 204 MDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 204 ~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
+++..+. ++++........+ .++.++.+.... -+..+++..||++|. +.|+...||..+|+|.|++-.+
T Consensus 208 L~~~~~~-vV~ipr~~~~~~~---~~~~~~~i~~~~--vd~~~Ll~~a~l~Ig-----~ggTMa~EAA~LGtPaIs~~~g 276 (335)
T PF04007_consen 208 LEKYGRN-VVIIPRYEDQREL---FEKYGVIIPPEP--VDGLDLLYYADLVIG-----GGGTMAREAALLGTPAISCFPG 276 (335)
T ss_pred HHhhCce-EEEecCCcchhhH---HhccCccccCCC--CCHHHHHHhcCEEEe-----CCcHHHHHHHHhCCCEEEecCC
Confidence 5555444 5666544333322 233344333322 356689999999993 3378889999999999986433
Q ss_pred ---CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 284 ---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 284 ---~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
++.+++ -+.|+++...|++++.+.+.+..
T Consensus 277 ~~~~vd~~L-----~~~Gll~~~~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 277 KLLAVDKYL-----IEKGLLYHSTDPDEIVEYVRKNL 308 (335)
T ss_pred cchhHHHHH-----HHCCCeEecCCHHHHHHHHHHhh
Confidence 333444 34577888889999988666543
No 126
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=8.8e-06 Score=74.20 Aligned_cols=274 Identities=13% Similarity=0.083 Sum_probs=158.9
Q ss_pred hHHHHHHhhccCCCEEEeCCCchh-HHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 52 SPRIISEVARFKPDIIHASSPGIM-VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~-~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
...+...|.....||.+--+..+. .....+ ...-.|+.++.-++........ .. +--+|..+.
T Consensus 324 d~e~a~~I~~d~IdILvDl~g~T~d~r~~v~--A~RpAPiqvswlGy~aT~g~p~-~D-------------Y~I~D~y~v 387 (620)
T COG3914 324 DAEIANAIRTDGIDILVDLDGHTVDTRCQVF--AHRPAPIQVSWLGYPATTGSPN-MD-------------YFISDPYTV 387 (620)
T ss_pred HHHHHHHHHhcCCeEEEeccCceeccchhhh--hcCCCceEEeecccccccCCCc-ce-------------EEeeCceec
Confidence 456778888889999887654222 222222 2334678776555432221010 00 112555555
Q ss_pred cChhHHHHHHHhcccCCCcEEEee-CCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeecccccc--HHHHHHHHHhC
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWK-KGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS--LDFLKRVMDRL 207 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~--~~~l~~a~~~~ 207 (385)
+ +...+++.+.- .-+| .-...+.+.+.... ..+.+.. .+++..+++++++..+.-. .+.-.++++..
T Consensus 388 P-p~ae~yysEkl-------~RLp~cy~p~d~~~~v~p~-~sR~~lg-lp~~avVf~c~~n~~K~~pev~~~wmqIL~~v 457 (620)
T COG3914 388 P-PTAEEYYSEKL-------WRLPQCYQPVDGFEPVTPP-PSRAQLG-LPEDAVVFCCFNNYFKITPEVFALWMQILSAV 457 (620)
T ss_pred C-chHHHHHHHHH-------HhcccccCCCCCcccCCCC-cchhhcC-CCCCeEEEEecCCcccCCHHHHHHHHHHHHhC
Confidence 5 55556665542 2223 22222333322211 1122222 2445556666665543321 44556777778
Q ss_pred CCceEEEEeCCccH---HHHHHHHcCC-----CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 208 PEARIAFIGDGPYR---EELEKMFTGM-----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 208 ~~~~l~i~G~g~~~---~~l~~~~~~~-----~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
|+-.|.+.|.|+.. ..++.++++. +++|.+..++++..+-|.-||+++-+.-+ +..++.+|++.+|+||++
T Consensus 458 P~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h~a~~~iADlvLDTyPY-~g~TTa~daLwm~vPVlT 536 (620)
T COG3914 458 PNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDHRARYGIADLVLDTYPY-GGHTTASDALWMGVPVLT 536 (620)
T ss_pred CCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHHHHhhchhheeeecccC-CCccchHHHHHhcCceee
Confidence 99999999876543 3444554433 68999999999999999999999855433 446788999999999997
Q ss_pred ecCCCCC-----cccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHH
Q 016648 280 VRAGGIP-----DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME---KYDWRAATRTIRNEQY 351 (385)
Q Consensus 280 s~~~~~~-----e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~---~~s~~~~~~~~~~~iy 351 (385)
-...... .++. .-|..-+++. +.++.++.--.+-+|...+++.+..-+...+ -|+.+..++++. .+|
T Consensus 537 ~~G~~FasR~~~si~~--~agi~e~vA~--s~~dYV~~av~~g~dral~q~~r~~l~~~r~tspL~d~~~far~le-~~y 611 (620)
T COG3914 537 RVGEQFASRNGASIAT--NAGIPELVAD--SRADYVEKAVAFGSDRALRQQVRAELKRSRQTSPLFDPKAFARKLE-TLY 611 (620)
T ss_pred eccHHHHHhhhHHHHH--hcCCchhhcC--CHHHHHHHHHHhcccHHHHHhhHHHHHhccccCcccCHHHHHHHHH-HHH
Confidence 4311111 1110 1122333333 7777777777777777666665554444432 389999999995 799
Q ss_pred HHHHHH
Q 016648 352 NAAIWF 357 (385)
Q Consensus 352 ~~~~~~ 357 (385)
.+..+.
T Consensus 612 ~~M~~~ 617 (620)
T COG3914 612 WGMWSE 617 (620)
T ss_pred HHHHHh
Confidence 887654
No 127
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=98.68 E-value=7.3e-07 Score=81.17 Aligned_cols=270 Identities=13% Similarity=0.075 Sum_probs=124.2
Q ss_pred CCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHHHhc
Q 016648 64 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAAR 143 (385)
Q Consensus 64 pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~ 143 (385)
.+++++.+..... ....+..+.++|...|+. +.-.-........ .............|.+++.|+...+.+.+.+
T Consensus 79 Ak~~i~~~~~~~~---~~~~~~~~~~~i~lwHG~-~~K~~g~~~~~~~-~~~~~~~~~~~~~d~~~~~s~~~~~~~~~~f 153 (369)
T PF04464_consen 79 AKYIISDSYFPDL---IYFKKRKNQKYIQLWHGI-PLKKIGYDSPDNK-NYRKNYKRNYRNYDYFIVSSEFEKEIFKKAF 153 (369)
T ss_dssp EEEEEESS---T-----TS---TTSEEEE--SS---SB--GGG-S----TS-HHHHHHHTT-SEEEESSHHHHHHHHHHT
T ss_pred CcEEEECCCCCcc---cccccCCCcEEEEecCCC-cccccchhccccc-cchhhhhhhccCCcEEEECCHHHHHHHHHHh
Confidence 3677777431111 112345678888889996 3321111000000 0001344567889999999999999999988
Q ss_pred ccCCCcEEEeeCCCCCCCCCCCCCC-hhhHhhhcCCCCCCcEEEEEeeccccccH------------HHHHHHHHhCCCc
Q 016648 144 VTAANKIRIWKKGVDSESFHPRFRS-SEMRWRLSNGEPDKPLIVHVGRLGVEKSL------------DFLKRVMDRLPEA 210 (385)
Q Consensus 144 ~~~~~~i~vi~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~~~~~k~~------------~~l~~a~~~~~~~ 210 (385)
+.+.+++.+...+-....+...... ........ ...++.+|+|+-++...... +.+. ...-+++
T Consensus 154 ~~~~~~i~~~G~PR~D~l~~~~~~~~~~i~~~~~-~~~~~k~ILyaPT~R~~~~~~~~~~~~~~~~~~~l~--~~~~~~~ 230 (369)
T PF04464_consen 154 GYPEDKILVTGYPRNDYLFNKSKENRNRIKKKLG-IDKDKKVILYAPTWRDNSSNEYFKFFFSDLDFEKLN--FLLKNNY 230 (369)
T ss_dssp T--GGGEEES--GGGHHHHHSTT-HHHHHHHHTT---SS-EEEEEE----GGG--GGSS----TT-HHHHH--HHHTTTE
T ss_pred ccCcceEEEeCCCeEhHHhccCHHHHHHHHHHhc-cCCCCcEEEEeeccccccccccccccccccCHHHHH--HHhCCCc
Confidence 7666666655432211111111111 11222222 24456689998766443222 2222 1222567
Q ss_pred eEEEEeCCccHHHHHH-HHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe--cCCCC--
Q 016648 211 RIAFIGDGPYREELEK-MFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV--RAGGI-- 285 (385)
Q Consensus 211 ~l~i~G~g~~~~~l~~-~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s--~~~~~-- 285 (385)
.+++-........... .....++.....- +++.+++..||++|.- ++..++|++.+|+|||.. |....
T Consensus 231 ~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~--~~~~~ll~~aDiLITD-----ySSi~fD~~~l~KPiify~~D~~~Y~~ 303 (369)
T PF04464_consen 231 VLIIKPHPNMKKKFKDFKEDNSNIIFVSDN--EDIYDLLAAADILITD-----YSSIIFDFLLLNKPIIFYQPDLEEYEK 303 (369)
T ss_dssp EEEE--SHHHHTT----TT-TTTEEE-TT---S-HHHHHHT-SEEEES-----S-THHHHHGGGT--EEEE-TTTTTTTT
T ss_pred EEEEEeCchhhhchhhhhccCCcEEECCCC--CCHHHHHHhcCEEEEe-----chhHHHHHHHhCCCEEEEeccHHHHhh
Confidence 7666553322222222 1123356655543 5899999999999944 367899999999999954 33211
Q ss_pred -CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 016648 286 -PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQ 350 (385)
Q Consensus 286 -~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~i 350 (385)
+.+..+..+...|-.+. +.++|.++|..+++++...++..+...+..-.|.-.+.++++.+.|
T Consensus 304 ~rg~~~~~~~~~pg~~~~--~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I 367 (369)
T PF04464_consen 304 ERGFYFDYEEDLPGPIVY--NFEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYI 367 (369)
T ss_dssp TSSBSS-TTTSSSS-EES--SHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHH
T ss_pred ccCCCCchHhhCCCceeC--CHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHH
Confidence 11110002333455554 8999999999998876654443333333333344445566555443
No 128
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.62 E-value=8e-07 Score=78.81 Aligned_cols=179 Identities=12% Similarity=0.045 Sum_probs=107.1
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHHh--CCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHH
Q 016648 62 FKPDIIHASSPGIMVFGALIIAKLL--CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDL 139 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~~~--~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~ 139 (385)
.+||++++-+.+.+.+.....++.. |+|+++.+-- .-+ .|... ..+.+.+.+|.+++.-+...+.+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi~P---qvW-----AWr~~----R~~~i~k~~d~vl~ifPFE~~~y 142 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYILP---QVW-----AWKKG----RAKILEKYCDFLASILPFEVQFY 142 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECc---cce-----eeCcc----hHHHHHHHHhhhhccCCCCHHHh
Confidence 6999999876544444434444555 7998875432 211 11111 34567788999988777666655
Q ss_pred HHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccc--cccHHHHHHHHHhCCC--ceEEEE
Q 016648 140 EAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPE--ARIAFI 215 (385)
Q Consensus 140 ~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~--~~l~i~ 215 (385)
+ .+..++.|++-.. ..... .. . .+++.+.++.|+-.. .+.+..++++++++.+ ..+++.
T Consensus 143 ----g---~~~~~VGhPl~d~-~~~~~------~~--~-~~~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~ 205 (347)
T PRK14089 143 ----Q---SKATYVGHPLLDE-IKEFK------KD--L-DKEGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVP 205 (347)
T ss_pred ----C---CCCEEECCcHHHh-hhhhh------hh--c-CCCCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 2 2556777765322 11110 00 1 223445566665432 2445666688877632 566676
Q ss_pred eCCccHHHHHHHHcCC-CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 216 GDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 216 G~g~~~~~l~~~~~~~-~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
|.... +.+++...+. .+.+. ++..++|+.||+.+..| |++.+|++.+|+|.|..
T Consensus 206 ~a~~~-~~i~~~~~~~~~~~~~-----~~~~~~m~~aDlal~~S-----GT~TLE~al~g~P~Vv~ 260 (347)
T PRK14089 206 SFFKG-KDLKEIYGDISEFEIS-----YDTHKALLEAEFAFICS-----GTATLEAALIGTPFVLA 260 (347)
T ss_pred CCCcH-HHHHHHHhcCCCcEEe-----ccHHHHHHhhhHHHhcC-----cHHHHHHHHhCCCEEEE
Confidence 65433 5555544332 33333 25578999999999776 88888999999999974
No 129
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.53 E-value=4.4e-07 Score=70.18 Aligned_cols=76 Identities=28% Similarity=0.292 Sum_probs=56.4
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhC-CCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC-VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~-~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
..++.+++++.+||+||+|.+....+.+.++++..+ +|+|++.|+..... . ....+..+.+.+.+++++|.+++
T Consensus 63 ~~~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg~~~~~-~----~~~~~~~~~~~~~~~k~~~~ii~ 137 (139)
T PF13477_consen 63 YFRLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHGSDFYN-S----SKKKKLKKFIIKFAFKRADKIIV 137 (139)
T ss_pred HHHHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecCCeeec-C----CchHHHHHHHHHHHHHhCCEEEE
Confidence 458999999999999999998665555666677777 99999999852211 1 11111445588899999999998
Q ss_pred cC
Q 016648 131 PS 132 (385)
Q Consensus 131 ~s 132 (385)
.|
T Consensus 138 ~~ 139 (139)
T PF13477_consen 138 QS 139 (139)
T ss_pred cC
Confidence 76
No 130
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=98.52 E-value=9.7e-06 Score=68.31 Aligned_cols=231 Identities=16% Similarity=0.188 Sum_probs=142.7
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
...+.+++.+++||+.+.-.... +...+...|+|.++...+.... ...+..+..||.++++
T Consensus 73 ~~~L~ki~~~~kpdv~i~~~s~~----l~rvafgLg~psIi~~D~ehA~---------------~qnkl~~Pla~~ii~P 133 (346)
T COG1817 73 VYKLSKIIAEFKPDVAIGKHSPE----LPRVAFGLGIPSIIFVDNEHAE---------------AQNKLTLPLADVIITP 133 (346)
T ss_pred HHHHHHHHhhcCCceEeecCCcc----hhhHHhhcCCceEEecCChhHH---------------HHhhcchhhhhheecc
Confidence 44688899999999998833211 2345677899988754442111 1345678899999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCC----CCCCCCCCChhhHhhhcCCCCCCcEEEEEee-----ccccccHHHHHH
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDS----ESFHPRFRSSEMRWRLSNGEPDKPLIVHVGR-----LGVEKSLDFLKR 202 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~-----~~~~k~~~~l~~ 202 (385)
+....+.+...+.. +.++ +-.||+-. ..|.| ..+..+++....++..+++=.-. ....++++.+.+
T Consensus 134 ~~~~~~~~~~~G~~-p~~i-~~~~giae~~~v~~f~p---d~evlkeLgl~~~~~yIVmRpe~~~A~y~~g~~~~~~~~~ 208 (346)
T COG1817 134 EAIDEEELLDFGAD-PNKI-SGYNGIAELANVYGFVP---DPEVLKELGLEEGETYIVMRPEPWGAHYDNGDRGISVLPD 208 (346)
T ss_pred cccchHHHHHhCCC-ccce-ecccceeEEeecccCCC---CHHHHHHcCCCCCCceEEEeeccccceeeccccchhhHHH
Confidence 99888888887753 3333 33445422 12333 34445555554444444443322 244566777777
Q ss_pred HHHhCCCceEEEEeCCccHHHHHHHHcCCCeEE-ecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 203 VMDRLPEARIAFIGDGPYREELEKMFTGMPAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 203 a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~-~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
+++.+++.-.+++-..... ++..++.++.. .... .|-.+++-.|++++ .+.|+..-||...|+|.|+..
T Consensus 209 li~~l~k~giV~ipr~~~~---~eife~~~n~i~pk~~--vD~l~Llyya~lvi-----g~ggTMarEaAlLGtpaIs~~ 278 (346)
T COG1817 209 LIKELKKYGIVLIPREKEQ---AEIFEGYRNIIIPKKA--VDTLSLLYYATLVI-----GAGGTMAREAALLGTPAISCY 278 (346)
T ss_pred HHHHHHhCcEEEecCchhH---HHHHhhhccccCCccc--ccHHHHHhhhheee-----cCCchHHHHHHHhCCceEEec
Confidence 7777766666666543322 23333332222 1111 34455888899988 334677889999999999886
Q ss_pred CC---CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHH
Q 016648 282 AG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 321 (385)
Q Consensus 282 ~~---~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~ 321 (385)
-| ++.++. -+.|.++...|+.+..+.+.+.+.++.
T Consensus 279 pGkll~vdk~l-----ie~G~~~~s~~~~~~~~~a~~~l~~~~ 316 (346)
T COG1817 279 PGKLLAVDKYL-----IEKGLLYHSTDEIAIVEYAVRNLKYRR 316 (346)
T ss_pred CCccccccHHH-----HhcCceeecCCHHHHHHHHHHHhhchh
Confidence 33 344444 456788888888888888888777654
No 131
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=98.44 E-value=1.5e-05 Score=72.96 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=97.4
Q ss_pred CCcEEEEEeecccc-ccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC
Q 016648 181 DKPLIVHVGRLGVE-KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 259 (385)
Q Consensus 181 ~~~~i~~~G~~~~~-k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~ 259 (385)
.+++.+..|+.... .=+..+++++..+ +.++++...+ ... .......|+...+++|+.+ ++..||++|
T Consensus 237 ~~~vyvslGt~~~~~~l~~~~~~a~~~l-~~~vi~~~~~-~~~--~~~~~p~n~~v~~~~p~~~---~l~~ad~vI---- 305 (406)
T COG1819 237 RPIVYVSLGTVGNAVELLAIVLEALADL-DVRVIVSLGG-ARD--TLVNVPDNVIVADYVPQLE---LLPRADAVI---- 305 (406)
T ss_pred CCeEEEEcCCcccHHHHHHHHHHHHhcC-CcEEEEeccc-ccc--ccccCCCceEEecCCCHHH---HhhhcCEEE----
Confidence 34455666766544 1233445555554 4566665533 111 1112244899999998777 599999999
Q ss_pred CCCCcHHHHHHHhcCCcEEEecCC----CCCcccccCCCCCeeEeeC--CCCHHHHHHHHhHhhcCHHHHHHHHHHHHHH
Q 016648 260 SETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFN--PGDLDDCLSKLEPLLYNQELRETMGQAARQE 333 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~~~~g~~~~--~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~ 333 (385)
..|..+++.||+.+|+|+|+-..+ ...+.+ ++-..|.... .-+.+.++++|+++++|+..++...+..+..
T Consensus 306 ~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rv---e~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~ 382 (406)
T COG1819 306 HHGGAGTTSEALYAGVPLVVIPDGADQPLNAERV---EELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEF 382 (406)
T ss_pred ecCCcchHHHHHHcCCCEEEecCCcchhHHHHHH---HHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 445678899999999999986544 233444 5556776666 5789999999999999987655544444333
Q ss_pred HHhCCHHHHHHHH
Q 016648 334 MEKYDWRAATRTI 346 (385)
Q Consensus 334 ~~~~s~~~~~~~~ 346 (385)
.+.-..+..++.+
T Consensus 383 ~~~~g~~~~a~~l 395 (406)
T COG1819 383 KEEDGPAKAADLL 395 (406)
T ss_pred hhcccHHHHHHHH
Confidence 3445544444444
No 132
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=98.36 E-value=1.9e-05 Score=74.32 Aligned_cols=138 Identities=15% Similarity=0.156 Sum_probs=94.3
Q ss_pred CcEEEEEeeccc-----cccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHH--HhCcEE
Q 016648 182 KPLIVHVGRLGV-----EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAY--ASGDVF 254 (385)
Q Consensus 182 ~~~i~~~G~~~~-----~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~--~~adi~ 254 (385)
+.+++..|+... .+-...+++++++++ .++++..++...+ .....|+.+.+++|+.++ + ..++++
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~-~~viw~~~~~~~~----~~~p~Nv~i~~w~Pq~~l---L~hp~v~~f 368 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLP-YNVLWKYDGEVEA----INLPANVLTQKWFPQRAV---LKHKNVKAF 368 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCC-CeEEEEECCCcCc----ccCCCceEEecCCCHHHH---hcCCCCCEE
Confidence 467778888642 344678889998887 4766655443221 112358999999998765 5 558888
Q ss_pred EEcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeCC--CCHHHHHHHHhHhhcCHHHHHHHHH
Q 016648 255 VMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQ 328 (385)
Q Consensus 255 v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~~--~~~~~l~~~i~~ll~~~~~~~~~~~ 328 (385)
| ..|..+++.||+.+|+|+|+-+..+ ....+ ...+.|...+. -+.+++.++|.++++|+..++...+
T Consensus 369 I----tHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv---~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ 441 (507)
T PHA03392 369 V----TQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKY---VELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKE 441 (507)
T ss_pred E----ecCCcccHHHHHHcCCCEEECCCCccHHHHHHHH---HHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8 5566788999999999999865432 23333 34456666553 3779999999999999776555554
Q ss_pred HHHHHH
Q 016648 329 AARQEM 334 (385)
Q Consensus 329 ~a~~~~ 334 (385)
-++...
T Consensus 442 ls~~~~ 447 (507)
T PHA03392 442 LRHLIR 447 (507)
T ss_pred HHHHHH
Confidence 444443
No 133
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.31 E-value=0.0024 Score=58.76 Aligned_cols=251 Identities=10% Similarity=0.049 Sum_probs=136.3
Q ss_pred HHHHHhhccCCCEEEeCCCchh-------HHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCC
Q 016648 54 RIISEVARFKPDIIHASSPGIM-------VFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 126 (385)
Q Consensus 54 ~l~~~i~~~~pDiI~~~~~~~~-------~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 126 (385)
.+.+.+++ .|+++.-+...+ .+...+.++..|+|+++.-++..|... +..+...+.+++++|
T Consensus 110 ~~~~~l~~--aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gqsiGPf~~---------~~~r~l~r~vl~~~~ 178 (426)
T PRK10017 110 DFVRLLSG--YDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGHSVGPFQD---------EQFNQLANYVFGHCD 178 (426)
T ss_pred HHHHHHHh--CCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECCcCCCcCC---------HHHHHHHHHHHhcCC
Confidence 33444444 499988653221 122234667889999998888765432 223457788899999
Q ss_pred eEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCC----hhhHhhhcCCCCCCcEEEE-Eeecccc-c-----
Q 016648 127 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRS----SEMRWRLSNGEPDKPLIVH-VGRLGVE-K----- 195 (385)
Q Consensus 127 ~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~-~G~~~~~-k----- 195 (385)
.|.+=.+...+.+++.+. +..++.+.+..+-.- ++.... ........ ....+.+|+. +..+.+. +
T Consensus 179 ~ItvRD~~S~~~Lk~lGv-~~~~v~~~aDpAF~L--~~~~~~~~~~~~~~~~~~-~~~~~~~Vgisvr~~~~~~~~~~~~ 254 (426)
T PRK10017 179 ALILRESVSLDLMKRSNI-TTAKVEHGVDTAWLV--DHHTEDFTASYAVQHWLD-VAAQQKTVAITLRELAPFDKRLGTT 254 (426)
T ss_pred EEEEccHHHHHHHHHhCC-CccceEEecChhhhC--Cccccccccchhhhhhhc-ccccCCEEEEEeccccccccccccc
Confidence 999988888888888764 445676665432111 111000 00000011 1123334433 3333211 1
Q ss_pred --c-HHHHHHHHHhC--CCceEEEEeC-------CccH-H---HHHHHHcCC-Ce-EEecccChHHHHHHHHhCcEEEEc
Q 016648 196 --S-LDFLKRVMDRL--PEARIAFIGD-------GPYR-E---ELEKMFTGM-PA-VFTGMLLGEELSQAYASGDVFVMP 257 (385)
Q Consensus 196 --~-~~~l~~a~~~~--~~~~l~i~G~-------g~~~-~---~l~~~~~~~-~i-~~~g~~~~~~~~~~~~~adi~v~p 257 (385)
. ...+.++++.+ .+.+++++.. +++. . .+.+..... ++ .+.+..+..|+..++++||++|..
T Consensus 255 ~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~~~~vi~~~~~~~e~~~iIs~~dl~ig~ 334 (426)
T PRK10017 255 QQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPARYHVVMDELNDLEMGKILGACELTVGT 334 (426)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhcccccceeEecCCCChHHHHHHHhhCCEEEEe
Confidence 1 13333444433 3566665542 1221 2 222222221 22 334445567899999999999843
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEecCC-CCCcccccCCCCCeeEee--CCCCHHHHHHHHhHhhcCHHHHHHH
Q 016648 258 SESETLGLVVLEAMSSGIPVVGVRAG-GIPDIIPEDQDGKIGYLF--NPGDLDDCLSKLEPLLYNQELRETM 326 (385)
Q Consensus 258 s~~e~~~~~~~Ea~a~G~PvI~s~~~-~~~e~~~~~~~~~~g~~~--~~~~~~~l~~~i~~ll~~~~~~~~~ 326 (385)
-. .+++=|++.|+|+|+-... -+..++.. -|...++. +.-+.+++.+.+.++++|.+..++.
T Consensus 335 Rl-----Ha~I~a~~~gvP~i~i~Y~~K~~~~~~~--lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~~~~ 399 (426)
T PRK10017 335 RL-----HSAIISMNFGTPAIAINYEHKSAGIMQQ--LGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNAR 399 (426)
T ss_pred cc-----hHHHHHHHcCCCEEEeeehHHHHHHHHH--cCCccEEechhhCCHHHHHHHHHHHHhCHHHHHHH
Confidence 32 2466699999999976532 22333310 02222323 3346788999999999987765443
No 134
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=98.27 E-value=8.8e-06 Score=71.61 Aligned_cols=104 Identities=22% Similarity=0.276 Sum_probs=70.4
Q ss_pred HHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccC--CCCCeeEe-eC------CCCHHHHHHHH
Q 016648 243 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED--QDGKIGYL-FN------PGDLDDCLSKL 313 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~--~~~~~g~~-~~------~~~~~~l~~~i 313 (385)
|..++.+.|++.|+||.+|.+|-+..|+-.+|+|-|+|+.+|..-++++. .+...|+. ++ .++++++++.+
T Consensus 493 DYeeFVRGCHLGVFPSYYEPWGYTPAECTVMGiPSvtTNlSGFGcfMeehi~d~~ayGIYIvDRRfks~deSv~qL~~~m 572 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSVTTNLSGFGCFMEEHIEDPQAYGIYIVDRRFKSPDESVQQLASFM 572 (692)
T ss_pred CHHHHhccccccccccccCCCCCCchheEEeccccccccccchhhhHHHHhcCchhceEEEEecccCChhhHHHHHHHHH
Confidence 57788999999999999999999999999999999999988765444211 12224443 33 23455566555
Q ss_pred hHhhcCHHHHHHHHHHHHHH-HH-hCCHHHHHHHHH
Q 016648 314 EPLLYNQELRETMGQAARQE-ME-KYDWRAATRTIR 347 (385)
Q Consensus 314 ~~ll~~~~~~~~~~~~a~~~-~~-~~s~~~~~~~~~ 347 (385)
..... ...++++-++.+.. +. -.+|..+...|.
T Consensus 573 ~~F~~-qsRRQRIiqRNrtErLSdLLDWk~lG~~Y~ 607 (692)
T KOG3742|consen 573 YEFCK-QSRRQRIIQRNRTERLSDLLDWKYLGRYYR 607 (692)
T ss_pred HHHHH-HHHHHHHHHhcchhhHHHHHhHHHHhHHHH
Confidence 55543 33455555555443 33 478888776665
No 135
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.18 E-value=6.1e-05 Score=62.73 Aligned_cols=139 Identities=10% Similarity=0.110 Sum_probs=80.7
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEE-eC-CccHHHHHHHHcC-CCeEEecccChHHHHHHHHhCcEEEEc
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFI-GD-GPYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMP 257 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~-G~-g~~~~~l~~~~~~-~~i~~~g~~~~~~~~~~~~~adi~v~p 257 (385)
.+-+++..|.-++..=.-.++..+.+- ++.+.++ |. .+..+.+.+.+.+ .++.++-.. ++|.++|++||+.|..
T Consensus 158 ~r~ilI~lGGsDpk~lt~kvl~~L~~~-~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~--~dma~LMke~d~aI~A 234 (318)
T COG3980 158 KRDILITLGGSDPKNLTLKVLAELEQK-NVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDT--NDMAELMKEADLAISA 234 (318)
T ss_pred hheEEEEccCCChhhhHHHHHHHhhcc-CeeEEEEecCCCcchhHHHHHHhhCCCeeeEecc--hhHHHHHHhcchheec
Confidence 344677777766532233333333333 3555553 42 3444555555544 467777666 8999999999999854
Q ss_pred CCCCCCcHHHHHHHhcCCcEE----EecCCCCCcccccC-CCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHH
Q 016648 258 SESETLGLVVLEAMSSGIPVV----GVRAGGIPDIIPED-QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAA 330 (385)
Q Consensus 258 s~~e~~~~~~~Ea~a~G~PvI----~s~~~~~~e~~~~~-~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a 330 (385)
. |.++.|++..|+|.+ +.+.......++.. ...+.|+- .........+.++.+|+..++.+....
T Consensus 235 a-----GstlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~---l~~~~~~~~~~~i~~d~~~rk~l~~~~ 304 (318)
T COG3980 235 A-----GSTLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYH---LKDLAKDYEILQIQKDYARRKNLSFGS 304 (318)
T ss_pred c-----chHHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCC---CchHHHHHHHHHhhhCHHHhhhhhhcc
Confidence 3 889999999999943 23333333333100 00112222 245566677778888877766655433
No 136
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=98.18 E-value=1.5e-05 Score=63.47 Aligned_cols=92 Identities=18% Similarity=0.025 Sum_probs=66.3
Q ss_pred CCCEEEeCCCchhHHHHHHHH--HHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHH
Q 016648 63 KPDIIHASSPGIMVFGALIIA--KLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 140 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~~~~~--~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 140 (385)
+.||++++.....++...+.. +..|.|+++.+|+. ++....+....++.++..++.+.+.+|.+|+.|+.+.+++.
T Consensus 92 ~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGl--EWkR~KW~~~~k~~lk~~E~~avk~ad~lIaDs~~I~~y~~ 169 (185)
T PF09314_consen 92 KYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGL--EWKRAKWGRPAKKYLKFSEKLAVKYADRLIADSKGIQDYIK 169 (185)
T ss_pred cCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcc--hhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHH
Confidence 678999987642222222232 33577999988874 23333333445556677889999999999999999999999
Q ss_pred HhcccCCCcEEEeeCCCC
Q 016648 141 AARVTAANKIRIWKKGVD 158 (385)
Q Consensus 141 ~~~~~~~~~i~vi~~~v~ 158 (385)
+.+. ..+..+|++|.|
T Consensus 170 ~~y~--~~~s~~IaYGad 185 (185)
T PF09314_consen 170 ERYG--RKKSTFIAYGAD 185 (185)
T ss_pred HHcC--CCCcEEecCCCC
Confidence 9986 457889999976
No 137
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=98.14 E-value=2.1e-07 Score=74.40 Aligned_cols=110 Identities=16% Similarity=0.254 Sum_probs=68.1
Q ss_pred ceEEE-EeCCccHHHHHHHHcC--CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC--
Q 016648 210 ARIAF-IGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG-- 284 (385)
Q Consensus 210 ~~l~i-~G~g~~~~~l~~~~~~--~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~-- 284 (385)
.++++ +|.....+.... ... .++.+.++. +++.++|+.||++|. -+.+.++.|++++|+|.|.-+.+.
T Consensus 32 ~~viv~~G~~~~~~~~~~-~~~~~~~v~~~~~~--~~m~~~m~~aDlvIs----~aG~~Ti~E~l~~g~P~I~ip~~~~~ 104 (167)
T PF04101_consen 32 IQVIVQTGKNNYEELKIK-VENFNPNVKVFGFV--DNMAELMAAADLVIS----HAGAGTIAEALALGKPAIVIPLPGAA 104 (167)
T ss_dssp CCCCCCCTTCECHHHCCC-HCCTTCCCEEECSS--SSHHHHHHHHSEEEE----CS-CHHHHHHHHCT--EEEE--TTT-
T ss_pred cEEEEEECCCcHHHHHHH-HhccCCcEEEEech--hhHHHHHHHcCEEEe----CCCccHHHHHHHcCCCeeccCCCCcc
Confidence 45544 555543333222 332 479999998 789999999999994 345789999999999998776655
Q ss_pred ------CCcccccCCCCCeeEeeC--CCCHHHHHHHHhHhhcCHHHHHHHHHH
Q 016648 285 ------IPDIIPEDQDGKIGYLFN--PGDLDDCLSKLEPLLYNQELRETMGQA 329 (385)
Q Consensus 285 ------~~e~~~~~~~~~~g~~~~--~~~~~~l~~~i~~ll~~~~~~~~~~~~ 329 (385)
....+ .....+..+. ..+.++|.++|..+++++.....+.++
T Consensus 105 ~~~q~~na~~~---~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~~~ 154 (167)
T PF04101_consen 105 DNHQEENAKEL---AKKGAAIMLDESELNPEELAEAIEELLSDPEKLKEMAKA 154 (167)
T ss_dssp T-CHHHHHHHH---HHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-SHHHCCC
T ss_pred hHHHHHHHHHH---HHcCCccccCcccCCHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 12222 1222233222 224678999999999998776655544
No 138
>PLN02670 transferase, transferring glycosyl groups
Probab=98.10 E-value=0.00013 Score=67.77 Aligned_cols=163 Identities=9% Similarity=0.044 Sum_probs=99.2
Q ss_pred CCCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEEEeCCc----------cHHHHHHHHcCCCeEEecccChHHHHHH
Q 016648 180 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGP----------YREELEKMFTGMPAVFTGMLLGEELSQA 247 (385)
Q Consensus 180 ~~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i~G~g~----------~~~~l~~~~~~~~i~~~g~~~~~~~~~~ 247 (385)
+...+.+.+|+... ..-+..+..+++..+. .|+.+-..+ ..+.+.+..++.++.+.+++|+.++
T Consensus 277 ~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~-~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~I--- 352 (472)
T PLN02670 277 VNSVVYVALGTEASLRREEVTELALGLEKSET-PFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKI--- 352 (472)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCC-CEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHH---
Confidence 35666777887632 3456777788887765 444432211 1122333344446888899998886
Q ss_pred HHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC----CCCcccccCCCCCeeEeeCC------CCHHHHHHHHhHhh
Q 016648 248 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP------GDLDDCLSKLEPLL 317 (385)
Q Consensus 248 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~~~~g~~~~~------~~~~~l~~~i~~ll 317 (385)
++...+..+- ..+.-++++||+++|+|+|+.... .....+ ...+.|..+.. -+.+++.+++.+++
T Consensus 353 L~H~~v~~Fv--tHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v---~~~g~Gv~l~~~~~~~~~~~e~i~~av~~vm 427 (472)
T PLN02670 353 LSHESVGGFL--THCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLL---HGKKLGLEVPRDERDGSFTSDSVAESVRLAM 427 (472)
T ss_pred hcCcccceee--ecCCcchHHHHHHcCCCEEeCcchhccHHHHHHH---HHcCeeEEeeccccCCcCcHHHHHHHHHHHh
Confidence 6666663332 345567899999999999986533 233344 33456665532 36899999999999
Q ss_pred cCHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHH
Q 016648 318 YNQELRETMGQAARQEMEK----YDWRAATRTIRNEQYN 352 (385)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~----~s~~~~~~~~~~~iy~ 352 (385)
.+++ -+++++++++..+. =+.+++++.+.+.+++
T Consensus 428 ~~~~-g~~~r~~a~~l~~~~~~~~~~~~~~~~~~~~l~~ 465 (472)
T PLN02670 428 VDDA-GEEIRDKAKEMRNLFGDMDRNNRYVDELVHYLRE 465 (472)
T ss_pred cCcc-hHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHHH
Confidence 8742 23455555555433 4455555555543333
No 139
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.94 E-value=0.00079 Score=62.97 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=87.4
Q ss_pred CCCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEc
Q 016648 180 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 257 (385)
Q Consensus 180 ~~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~p 257 (385)
+...+.+.+|+... ..-+..++++++.. +..++++..++ ...+.+.. ..++.+.+++|+.++ +...++..+-
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~-~~~~lw~~~~~-~~~~~~~~-~~~~~v~~w~pQ~~i---L~h~~v~~fv 346 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRDS-GVRFLWVARGE-ASRLKEIC-GDMGLVVPWCDQLKV---LCHSSVGGFW 346 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhC-CCCEEEEEcCc-hhhHhHhc-cCCEEEeccCCHHHH---hccCccceEE
Confidence 34567777887632 23366777777775 45676655432 11233322 236777899988876 5566662222
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEecCC----CCCcccccCCC-CCeeEeeC-------CCCHHHHHHHHhHhhcCH-HHHH
Q 016648 258 SESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQD-GKIGYLFN-------PGDLDDCLSKLEPLLYNQ-ELRE 324 (385)
Q Consensus 258 s~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~-~~~g~~~~-------~~~~~~l~~~i~~ll~~~-~~~~ 324 (385)
..+.-++++||+++|+|+|+-... .....+ .+ -+.|+-+. .-+.+++.+++++++.++ +..+
T Consensus 347 --tHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v---~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~ 421 (459)
T PLN02448 347 --THCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLI---VEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGK 421 (459)
T ss_pred --ecCchhHHHHHHHcCCCEEeccccccchhhHHHH---HHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHH
Confidence 345567899999999999986543 223333 22 13344442 237899999999999864 3445
Q ss_pred HHHHHHHHH
Q 016648 325 TMGQAARQE 333 (385)
Q Consensus 325 ~~~~~a~~~ 333 (385)
++++++.+.
T Consensus 422 ~~r~~a~~~ 430 (459)
T PLN02448 422 EMRRRAKEL 430 (459)
T ss_pred HHHHHHHHH
Confidence 555555544
No 140
>PLN03004 UDP-glycosyltransferase
Probab=97.93 E-value=0.00026 Score=65.52 Aligned_cols=135 Identities=13% Similarity=0.096 Sum_probs=87.4
Q ss_pred CCCCcEEEEEeecc--ccccHHHHHHHHHhCCCceEEEEeCCc-------------cHHHHHHHHcCCCeEEecccChHH
Q 016648 179 EPDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFIGDGP-------------YREELEKMFTGMPAVFTGMLLGEE 243 (385)
Q Consensus 179 ~~~~~~i~~~G~~~--~~k~~~~l~~a~~~~~~~~l~i~G~g~-------------~~~~l~~~~~~~~i~~~g~~~~~~ 243 (385)
+++..+.+.+|+.. ..+-+..+..+++..+. .++.+-..+ ..+.+.+..++.++.+.+++|+.+
T Consensus 268 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~-~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~ 346 (451)
T PLN03004 268 PEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQ-RFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVP 346 (451)
T ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHHCCC-CEEEEEcCCccccccccchhhhCChHHHHhccCCcEEEEeeCCHHH
Confidence 34567788888873 23456777788887765 444433211 112233444556899999999888
Q ss_pred HHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecC----CCCCcccccCCCCCeeEeeC-----CCCHHHHHHHHh
Q 016648 244 LSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA----GGIPDIIPEDQDGKIGYLFN-----PGDLDDCLSKLE 314 (385)
Q Consensus 244 ~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~----~~~~e~~~~~~~~~~g~~~~-----~~~~~~l~~~i~ 314 (385)
+ ++.+++..+-+ .+.-++++||+++|+|+|+... ......+. ..-+.|..++ .-+.++++++++
T Consensus 347 i---L~H~~v~~FvT--H~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~--~~~g~g~~l~~~~~~~~~~e~l~~av~ 419 (451)
T PLN03004 347 V---LNHKAVGGFVT--HCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIV--DEIKIAISMNESETGFVSSTEVEKRVQ 419 (451)
T ss_pred H---hCCCccceEec--cCcchHHHHHHHcCCCEEeccccccchhhHHHHH--HHhCceEEecCCcCCccCHHHHHHHHH
Confidence 5 78888843333 3556789999999999998653 23333330 1235665554 237899999999
Q ss_pred HhhcCHH
Q 016648 315 PLLYNQE 321 (385)
Q Consensus 315 ~ll~~~~ 321 (385)
+++++++
T Consensus 420 ~vm~~~~ 426 (451)
T PLN03004 420 EIIGECP 426 (451)
T ss_pred HHhcCHH
Confidence 9998754
No 141
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.00082 Score=65.17 Aligned_cols=281 Identities=16% Similarity=0.128 Sum_probs=165.0
Q ss_pred HHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcCh
Q 016648 54 RIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSV 133 (385)
Q Consensus 54 ~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~ 133 (385)
.+.+..+ .-|+|++|+.+.+.++.+.-.+..+..+-+..|..+|....-.......+ .-..+..+|.+-..+.
T Consensus 133 ~ive~~~--~~d~vwihdyhlmllp~~lr~~~~~~~ig~flhspfpssEi~r~lp~r~e-----Il~gll~~~~i~f~t~ 205 (732)
T KOG1050|consen 133 KIVEVYE--EGDIVWIHDYHLMLLPQMLRERFNSAKIGFFLHSPFPSSEIYRCLPVRKE-----ILRGLLYDDLLGFHTD 205 (732)
T ss_pred HHHHhcc--CCCcEEEEcchhhccchhhhcccccceEEEeccCCCChHHHHHhcccHHH-----HHHhhhccCccccccc
Confidence 3444444 67999999987665555544444566666778887665322111111111 1123344555544444
Q ss_pred hHHHHHHHh------------cc-------cCCCcEEEeeCCCCCCCCCCCCCC---hhhHhhhcCCCCCCcEEEEEeec
Q 016648 134 AIGKDLEAA------------RV-------TAANKIRIWKKGVDSESFHPRFRS---SEMRWRLSNGEPDKPLIVHVGRL 191 (385)
Q Consensus 134 ~~~~~~~~~------------~~-------~~~~~i~vi~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~G~~ 191 (385)
..+..+... ++ .....+..+|-|+|...+...... .....+......++.+++-+-++
T Consensus 206 d~arhFls~c~R~l~~~~~s~~~~~~v~~rgr~~~v~~~pigid~~r~v~~~~~~~~~~~~~ei~~~~~g~klilgvD~~ 285 (732)
T KOG1050|consen 206 DYARHFLSTCSRLLGLEVASKFPTAGVSGRGRDVSVKALPIGIDVQRFVKLLELPYVGSKGMEIKEPFKGKKLILGVDRL 285 (732)
T ss_pred cHHHHHHHHHHHHHHhhhhccCCcceEEeccceeeeeecccccchHHhhccccchhHHHHHHHHhhhccCCceEeccccc
Confidence 443333221 00 112345567777777665433221 11222222233477788888899
Q ss_pred cccccHHHHHHHHHh----CC----CceEEEEeC-----CccHHHHHHHHc----CC----------C-eEEecccChHH
Q 016648 192 GVEKSLDFLKRVMDR----LP----EARIAFIGD-----GPYREELEKMFT----GM----------P-AVFTGMLLGEE 243 (385)
Q Consensus 192 ~~~k~~~~l~~a~~~----~~----~~~l~i~G~-----g~~~~~l~~~~~----~~----------~-i~~~g~~~~~~ 243 (385)
+..||...=+.++++ +| ++.++.+.. +...++++.... .. . ..+...++..+
T Consensus 286 d~~kg~~~Kl~a~e~~L~~~pe~~~kVvliqi~~~~~~~~~~v~~~k~~v~~~v~rIn~~f~~~~~~pV~~~~~~~~~~~ 365 (732)
T KOG1050|consen 286 DSIKGIQLKLLAFEQFLEEYPEWIDKVVLIQIENPKRTDGKEVEELKFCVSVHVRRINEKFGSASYQPVHSLLKDLPFLE 365 (732)
T ss_pred ccccCchHHHHHHHHHHHhChhhhceEEEEEEecCCcccchHHHHHHHHhHhhhhhhhhccCCcccceEEEeeccCCHHH
Confidence 999887655555544 33 344444432 221122222211 11 1 45778889999
Q ss_pred HHHHHHhCcEEEEcCCCCCCcHHHHHHHhcC----CcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 244 LSQAYASGDVFVMPSESETLGLVVLEAMSSG----IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 244 ~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G----~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
+.+++.-+|+.+..+..+|..++.+|+..|. .+.|.+...|..+.. +....++.+.|.++++..|..+++.
T Consensus 366 l~a~~~Vaev~~v~s~rdGmnl~~~e~i~~~~~~~~~lVlsef~G~~~tl-----~d~aivvnpw~~~~~~~~i~~al~~ 440 (732)
T KOG1050|consen 366 LLALYKVAEVCPVTSWRDGMNLVFLEYILCQENKKSVLVLSEFIGDDTTL-----EDAAIVVNPWDGDEFAILISKALTM 440 (732)
T ss_pred HhhhHHhhhheeecccccccchhhhHHHHhhcccCCceEEeeeccccccc-----cccCEEECCcchHHHHHHHHHHhhc
Confidence 9999999999999999999999999999884 678888777766665 4456788899999999999999986
Q ss_pred HHHHHHHHH-HHHHHHHhCCHHHHHHHH
Q 016648 320 QELRETMGQ-AARQEMEKYDWRAATRTI 346 (385)
Q Consensus 320 ~~~~~~~~~-~a~~~~~~~s~~~~~~~~ 346 (385)
++.-.+++. ...+.+...+...++..+
T Consensus 441 s~~e~~~r~~~~~~~v~~~~~~~W~~~~ 468 (732)
T KOG1050|consen 441 SDEERELREPKHYKYVSTHDVVYWAKSF 468 (732)
T ss_pred CHHHHhhcchhhhhhhcchhHHHHHHHH
Confidence 654444333 223332334444444444
No 142
>PLN02764 glycosyltransferase family protein
Probab=97.82 E-value=0.00053 Score=63.34 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=87.0
Q ss_pred CCCCcEEEEEeeccc--cccHHHHHHHHHhC-CCceEEEEe-CC------ccHHHHHHHHcCCCeEEecccChHHHHHHH
Q 016648 179 EPDKPLIVHVGRLGV--EKSLDFLKRVMDRL-PEARIAFIG-DG------PYREELEKMFTGMPAVFTGMLLGEELSQAY 248 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~--~k~~~~l~~a~~~~-~~~~l~i~G-~g------~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~ 248 (385)
+++..+.+.+|+... .+.+..+...++.. .++.+++-- .+ ...+.++...++.++.+.+++|+.++ +
T Consensus 255 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~~~W~PQ~~v---L 331 (453)
T PLN02764 255 EPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVWGGWVQQPLI---L 331 (453)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEEeCCCCHHHH---h
Confidence 455677888888733 33344444443332 223333321 11 11123333344557888899999887 5
Q ss_pred HhC--cEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeC-----CCCHHHHHHHHhHhh
Q 016648 249 ASG--DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN-----PGDLDDCLSKLEPLL 317 (385)
Q Consensus 249 ~~a--di~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~-----~~~~~~l~~~i~~ll 317 (385)
+.. .++| ..+.-++++||+.+|+|+|+-+..+ ....+. +.-..|+.+. .-+.+++.+++++++
T Consensus 332 ~h~~v~~Fv----tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~--~~~g~gv~~~~~~~~~~~~e~i~~av~~vm 405 (453)
T PLN02764 332 SHPSVGCFV----SHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLS--DELKVSVEVAREETGWFSKESLRDAINSVM 405 (453)
T ss_pred cCcccCeEE----ecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHH--HHhceEEEeccccCCccCHHHHHHHHHHHh
Confidence 554 4466 4455778999999999999875432 223330 1234455432 137899999999999
Q ss_pred cCH-HHHHHHHHHHHHHH
Q 016648 318 YNQ-ELRETMGQAARQEM 334 (385)
Q Consensus 318 ~~~-~~~~~~~~~a~~~~ 334 (385)
+++ +..+++++++++..
T Consensus 406 ~~~~~~g~~~r~~a~~~~ 423 (453)
T PLN02764 406 KRDSEIGNLVKKNHTKWR 423 (453)
T ss_pred cCCchhHHHHHHHHHHHH
Confidence 875 45566666666553
No 143
>PF11440 AGT: DNA alpha-glucosyltransferase; InterPro: IPR016223 The T4 bacteriophage of E.coli protects its DNA via two glycosyltransferases which glucosylate 5-hydroxymethyl cytosines (5-HMC) using UDP-glucose. These two proteins are the retaining alpha-glucosyltransferase (AGT) and the inverting beta-glucosyltransferase (BGT). The proteins in this family are AGT. AGT adopts the GT-B fold and binds both the sugar donor and acceptor to the C-terminal domain. There is evidence for a role of AGT in the base-flipping mechanism and for its specific recognition of the acceptor base [].; PDB: 1YA6_B 1Y8Z_B 1Y6F_B 1XV5_A 1Y6G_B.
Probab=97.81 E-value=0.0066 Score=50.74 Aligned_cols=289 Identities=14% Similarity=0.064 Sum_probs=134.2
Q ss_pred HHHhccCCCCccccceeeccccccccCCCCcccccccccchHHHHHHhhccCCCEEEeCCCchhHH----HHHHHHHHhC
Q 016648 12 LFVSAFGLKTDLFFWILNFFHHIYSFPCPWYQKVPLSLALSPRIISEVARFKPDIIHASSPGIMVF----GALIIAKLLC 87 (385)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~----~~~~~~~~~~ 87 (385)
...-..|.+..++.+....+.+...-....+.-..+...-+.++.+.+. .+||+.+++.+.... .-..-.-..+
T Consensus 12 ~wf~KNg~~~~i~~a~e~sftR~dsH~~~~~si~k~~~~e~de~v~~vN--~yDI~m~nSvPa~~vqE~~iNnY~kii~~ 89 (355)
T PF11440_consen 12 DWFDKNGVEFTIVSADEKSFTRPDSHDSKSFSIPKYLAKEYDETVKKVN--DYDIVMFNSVPATKVQEAIINNYEKIIKK 89 (355)
T ss_dssp HHHHHTT-EEEEEEETSS--TTTTSSS-TTTEEEE-TTTHHHHHHHHHT--SSSEEEEEE--BTTS-HHHHHHHHHHHHC
T ss_pred HHHHhcCCeeEEEEecccccCCccccccceeeeehhhHHHHHHHHHHhh--ccCEEEEecccCchHHHHHHHHHHHHHHh
Confidence 3344556666666666555544444333332222223333444444444 789999986432211 1111111223
Q ss_pred ----CCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhH--HHHHH-Hhccc---CCCcEEEeeCCC
Q 016648 88 ----VPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAI--GKDLE-AARVT---AANKIRIWKKGV 157 (385)
Q Consensus 88 ----~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~--~~~~~-~~~~~---~~~~i~vi~~~v 157 (385)
+++|...|++......+.. ...-+++.+|.|++.|... ...+. ...+. ..+++.-.|...
T Consensus 90 Ik~~ik~V~~~Hdh~~lsI~rn~----------~le~~m~~~DvIfshs~~g~f~kv~m~~l~Ps~~~l~~~i~~~p~v~ 159 (355)
T PF11440_consen 90 IKPSIKVVGFMHDHNKLSIDRNP----------YLEGTMNEMDVIFSHSDNGWFSKVLMKELLPSKVSLFDRIKKFPMVF 159 (355)
T ss_dssp S-TTSEEEEEE---SHHHHTTBS----------SHHHHHHH-SEEEES-TTSHHHHTHHHHHS-SS--SSS-------EE
T ss_pred ccccceeEEEeeccceeeccccc----------cHHHHHHhhcEEEeccccchHHHHHHHhhccccCchhhhhhhcceee
Confidence 3467888996533222111 2334678999999987542 11122 22221 123444444333
Q ss_pred CCCCCCCCCCChhhHhhhcCCCCCCcEE---EEEeeccccccHHHHHHHHHhC---CCceEEEEeCCccHHHHHHHHc--
Q 016648 158 DSESFHPRFRSSEMRWRLSNGEPDKPLI---VHVGRLGVEKSLDFLKRVMDRL---PEARIAFIGDGPYREELEKMFT-- 229 (385)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~G~~~~~k~~~~l~~a~~~~---~~~~l~i~G~g~~~~~l~~~~~-- 229 (385)
.. ++...-...+.... .....+.. +|+|+....||...+++.-+.. ++.+-++-|-......+.-.-.
T Consensus 160 nf---qpp~~i~~~Rstyw-kd~se~nmnv~~yigR~Tt~kG~~~mfD~h~~~lK~~~~~t~~~GierS~A~~~i~d~~~ 235 (355)
T PF11440_consen 160 NF---QPPMDINKYRSTYW-KDVSEKNMNVNRYIGRQTTWKGPRRMFDLHEKILKPAGFKTIMEGIERSPAKISIKDHGI 235 (355)
T ss_dssp E-------B-HHHHHHHH----GGGSEEEEEEEE--SSGGG-HHHHHHHHHHTTTTTT-EEEEE---SSTHHHHHHHTT-
T ss_pred ec---CCcccHHHHHHHHh-hhhHhhhcccceeeeeeeeecCcHHHhhhHHHhcCCcchhHHhhhhhcCCceeeeecCCc
Confidence 22 22111112222221 12233444 7999999999999999877665 4677778772211121111111
Q ss_pred ---------------CC--CeEEecccChHHHHHHHHhCcEEEEcCC------CCCCcHHHHHHHhcCC-cEEEecCCCC
Q 016648 230 ---------------GM--PAVFTGMLLGEELSQAYASGDVFVMPSE------SETLGLVVLEAMSSGI-PVVGVRAGGI 285 (385)
Q Consensus 230 ---------------~~--~i~~~g~~~~~~~~~~~~~adi~v~ps~------~e~~~~~~~Ea~a~G~-PvI~s~~~~~ 285 (385)
.. .+.++|..-++|+.+.|+.+-+...-+. .+.+--+-+|..|||. ||.-...|..
T Consensus 236 ~~~y~~~~~~~~~~~~pN~~~~v~~~Yi~~E~~~~Maks~Fgy~~~k~~~~y~~r~mEYt~iE~~A~GtIPVF~k~~GEN 315 (355)
T PF11440_consen 236 PYEYYPKLDCDEPKPAPNSPVPVYGPYIRSEGLERMAKSLFGYQLSKLQQKYLQRSMEYTQIELIAVGTIPVFDKSWGEN 315 (355)
T ss_dssp -EEEE-CTGGGG---SSS--EEEESS--HHHHHHHHHTEEEEEE-----GGG-SS---HHHHHHHHCTSEEEEEHHHHHH
T ss_pred ccccCccccccCcccCCCCcceecchhhhHHHHHHHhhccceeecHHHHHHHHHhhhhhheeeeeeeceeeeeecccccc
Confidence 11 2778888888999999999988876543 2356778999999995 6665443322
Q ss_pred -------CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 286 -------PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 286 -------~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
..++ ......+.++.+|.++-.+.|.++.++
T Consensus 316 ~r~~~D~~~~~---~~~~~~I~~De~dle~T~ekl~E~a~~ 353 (355)
T PF11440_consen 316 NRFTLDGTRYI---DHPYSAIYFDENDLESTVEKLIEVANN 353 (355)
T ss_dssp SB-TTTSSBGG---SS--S-EEE-TTSHHHHHHHHHHHHT-
T ss_pred ceeeecCceee---ccCcceeEeccchHHHHHHHHHHHhcc
Confidence 2344 344456788888999888888887665
No 144
>PLN02562 UDP-glycosyltransferase
Probab=97.80 E-value=0.00079 Score=62.60 Aligned_cols=135 Identities=10% Similarity=0.009 Sum_probs=86.1
Q ss_pred CCcEEEEEeecc---ccccHHHHHHHHHhCCCceEEE-EeCC---ccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcE
Q 016648 181 DKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAF-IGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDV 253 (385)
Q Consensus 181 ~~~~i~~~G~~~---~~k~~~~l~~a~~~~~~~~l~i-~G~g---~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi 253 (385)
+..+++.+|+.. ..+-+..+..+++..+. +++. +..+ ...+.+.+.. ..++.+.+++|+.++ ++..++
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~-~fiW~~~~~~~~~l~~~~~~~~-~~~~~v~~w~PQ~~i---L~h~~v 347 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGR-PFIWVLNPVWREGLPPGYVERV-SKQGKVVSWAPQLEV---LKHQAV 347 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCC-CEEEEEcCCchhhCCHHHHHHh-ccCEEEEecCCHHHH---hCCCcc
Confidence 456778888853 34557788888888764 5444 3321 1222222322 246788899998886 666665
Q ss_pred EEEcCCCCCCcHHHHHHHhcCCcEEEecCC----CCCcccccCCC-CCeeEeeCCCCHHHHHHHHhHhhcCHHHHHH
Q 016648 254 FVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRET 325 (385)
Q Consensus 254 ~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~-~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~ 325 (385)
..+- ..+.-++++||+.+|+|+|+...- .....+ .+ -..|+-+..-+.+++++++++++.+++.+++
T Consensus 348 ~~fv--tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~---~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r~~ 419 (448)
T PLN02562 348 GCYL--THCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYI---VDVWKIGVRISGFGQKEVEEGLRKVMEDSGMGER 419 (448)
T ss_pred ceEE--ecCcchhHHHHHHcCCCEEeCCcccchHHHHHHH---HHHhCceeEeCCCCHHHHHHHHHHHhCCHHHHHH
Confidence 3333 334567899999999999986543 233333 22 2455555556889999999999988655443
No 145
>PLN00164 glucosyltransferase; Provisional
Probab=97.79 E-value=0.0036 Score=58.79 Aligned_cols=146 Identities=14% Similarity=0.106 Sum_probs=86.5
Q ss_pred CCCcEEEEEeeccc--cccHHHHHHHHHhCCCceEE-EEeCCc---------------cHHHHHHHHcCCCeEEecccCh
Q 016648 180 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIA-FIGDGP---------------YREELEKMFTGMPAVFTGMLLG 241 (385)
Q Consensus 180 ~~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~-i~G~g~---------------~~~~l~~~~~~~~i~~~g~~~~ 241 (385)
+...+.+.+|+... .+-+..+..+++..+. .++ ++.... ..+.+.+..++.++.+.+++|+
T Consensus 271 ~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~-~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ 349 (480)
T PLN00164 271 PASVVFLCFGSMGFFDAPQVREIAAGLERSGH-RFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQ 349 (480)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCC-CEEEEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCH
Confidence 34456677787522 2337777777777643 544 333211 1112333334456888899988
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC----CCCcccccCCCCCeeEeeCC-------CCHHHHH
Q 016648 242 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP-------GDLDDCL 310 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~~~~g~~~~~-------~~~~~l~ 310 (385)
.++ +..+++..+-+ .+.-++++||+++|+|+|+-..- .....+. +.-+.|+.+.. -+.+++.
T Consensus 350 ~~i---L~h~~vg~fvt--H~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~--~~~gvG~~~~~~~~~~~~~~~e~l~ 422 (480)
T PLN00164 350 KEI---LAHAAVGGFVT--HCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELV--ADMGVAVAMKVDRKRDNFVEAAELE 422 (480)
T ss_pred HHH---hcCcccCeEEe--ecccchHHHHHHcCCCEEeCCccccchhHHHHHH--HHhCeEEEeccccccCCcCcHHHHH
Confidence 776 77777533333 34456899999999999986532 2232220 22345655431 2689999
Q ss_pred HHHhHhhcCHH-HHHHHHHHHHHH
Q 016648 311 SKLEPLLYNQE-LRETMGQAARQE 333 (385)
Q Consensus 311 ~~i~~ll~~~~-~~~~~~~~a~~~ 333 (385)
++|.+++.+++ +.+++++++++.
T Consensus 423 ~av~~vm~~~~~~~~~~r~~a~~~ 446 (480)
T PLN00164 423 RAVRSLMGGGEEEGRKAREKAAEM 446 (480)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHH
Confidence 99999998653 345555555544
No 146
>PLN02208 glycosyltransferase family protein
Probab=97.76 E-value=0.0049 Score=57.18 Aligned_cols=205 Identities=10% Similarity=0.057 Sum_probs=107.6
Q ss_pred HHHhCCeEEEcChhHHHH-HHHhcccC-CCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeecccc--cc
Q 016648 121 LHRAADLTLVPSVAIGKD-LEAARVTA-ANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE--KS 196 (385)
Q Consensus 121 ~~~~ad~ii~~s~~~~~~-~~~~~~~~-~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~--k~ 196 (385)
....+|.|++.|-...|. +.+....+ ..++..|..-..... .....+.+...=+...+++..+.+.+|+...- +.
T Consensus 190 ~~~~~~~vl~Ntf~eLE~~~~~~~~~~~~~~v~~vGpl~~~~~-~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q 268 (442)
T PLN02208 190 GLKSCDVIALRTCKEIEGKFCDYISRQYHKKVLLTGPMFPEPD-TSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQ 268 (442)
T ss_pred hhccCCEEEEECHHHHHHHHHHHHHhhcCCCEEEEeecccCcC-CCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHH
Confidence 456789999988655443 22222111 124544442221110 00111111111122223456677778877431 21
Q ss_pred HHH-HHHH-HHhCCCceEEEEeC-C--c----cHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHH
Q 016648 197 LDF-LKRV-MDRLPEARIAFIGD-G--P----YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVV 267 (385)
Q Consensus 197 ~~~-l~~a-~~~~~~~~l~i~G~-g--~----~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~ 267 (385)
+.. +..+ +...| +.+++--. + . ..+.+.+...+.++.+.+++|+.++ ++...+..+-+ .+.-+++
T Consensus 269 ~~e~~~~l~~s~~p-f~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~i---L~H~~v~~Fvt--HcG~nS~ 342 (442)
T PLN02208 269 FQELCLGMELTGLP-FLIAVKPPRGSSTVQEGLPEGFEERVKGRGVVWGGWVQQPLI---LDHPSIGCFVN--HCGPGTI 342 (442)
T ss_pred HHHHHHHHHhCCCc-EEEEEeCCCcccchhhhCCHHHHHHHhcCCcEeeccCCHHHH---hcCCccCeEEc--cCCchHH
Confidence 222 2222 33333 33333211 1 1 1223334444568888899999886 66676544333 3556789
Q ss_pred HHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeCC-----CCHHHHHHHHhHhhcCH-HHHHHHHHHHHHHH
Q 016648 268 LEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP-----GDLDDCLSKLEPLLYNQ-ELRETMGQAARQEM 334 (385)
Q Consensus 268 ~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~~-----~~~~~l~~~i~~ll~~~-~~~~~~~~~a~~~~ 334 (385)
+||+++|+|+|+...-+ ....+. +.-+.|..++. -+.+++.++|+++++++ +..+++++++++..
T Consensus 343 ~Eai~~GVP~l~~P~~~DQ~~na~~~~--~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~ 417 (442)
T PLN02208 343 WESLVSDCQMVLIPFLSDQVLFTRLMT--EEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLK 417 (442)
T ss_pred HHHHHcCCCEEecCcchhhHHHHHHHH--HHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 99999999999875432 223220 22345655532 37899999999999865 45566666666553
No 147
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.71 E-value=0.0026 Score=59.91 Aligned_cols=133 Identities=12% Similarity=0.138 Sum_probs=80.5
Q ss_pred CCCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEE-EeCCc--------cHHHHHHHHcCCCeEEecccChHHHHHHH
Q 016648 180 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAF-IGDGP--------YREELEKMFTGMPAVFTGMLLGEELSQAY 248 (385)
Q Consensus 180 ~~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i-~G~g~--------~~~~l~~~~~~~~i~~~g~~~~~~~~~~~ 248 (385)
+...+.+.+|+... .+.+..+.++++..+. .+++ ++... ..+.+.+.....++++.+++|+.++ +
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~-~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~i---L 359 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQ-NFIWVVRKNENQGEKEEWLPEGFEERTKGKGLIIRGWAPQVLI---L 359 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCC-CEEEEEecCCcccchhhcCCHHHHHHhccCCEEEecCCCHHHH---h
Confidence 45567778887643 3456666777777643 4443 44211 1123333344558899999988664 7
Q ss_pred HhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC----CCCcccccCCCCCeeEee----------CCCCHHHHHHHHh
Q 016648 249 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLF----------NPGDLDDCLSKLE 314 (385)
Q Consensus 249 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~~~~g~~~----------~~~~~~~l~~~i~ 314 (385)
..+++..+- ..+.-++++||+++|+|+|+...- .....+. +.-..|+-+ ..-+.+++.++++
T Consensus 360 ~h~~v~~fv--tH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~--~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~ 435 (482)
T PLN03007 360 DHQATGGFV--THCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVT--QVLRTGVSVGAKKLVKVKGDFISREKVEKAVR 435 (482)
T ss_pred ccCccceee--ecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHH--HhhcceeEeccccccccccCcccHHHHHHHHH
Confidence 777763333 334467899999999999987543 2222220 001222221 1237899999999
Q ss_pred HhhcCH
Q 016648 315 PLLYNQ 320 (385)
Q Consensus 315 ~ll~~~ 320 (385)
+++.++
T Consensus 436 ~~m~~~ 441 (482)
T PLN03007 436 EVIVGE 441 (482)
T ss_pred HHhcCc
Confidence 999875
No 148
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=97.68 E-value=0.0032 Score=54.57 Aligned_cols=249 Identities=16% Similarity=0.091 Sum_probs=133.4
Q ss_pred HHHHhhccCCCEEEeCCCchhH----HHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 55 IISEVARFKPDIIHASSPGIMV----FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 55 l~~~i~~~~pDiI~~~~~~~~~----~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
+...++.++|||+++....... ...+-..+..+.+.+..+.+.... .......|. ....+..+-+..|.|++
T Consensus 98 il~t~~~fkPDi~IVd~~P~Glr~EL~ptL~yl~~~~t~~vL~lr~i~D~-p~~~~~~w~---~~~~~~~I~r~yD~V~v 173 (400)
T COG4671 98 ILSTAETFKPDIFIVDKFPFGLRFELLPTLEYLKTTGTRLVLGLRSIRDI-PQELEADWR---RAETVRLINRFYDLVLV 173 (400)
T ss_pred HHHHHHhcCCCEEEEeccccchhhhhhHHHHHHhhcCCcceeehHhhhhc-hhhhccchh---hhHHHHHHHHhheEEEE
Confidence 5566788999999998642211 222233345565565555553211 000000111 12256777889999999
Q ss_pred cChhHHHHHHHhcccC-CCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccc-cccHHHHHHHHHhCC
Q 016648 131 PSVAIGKDLEAARVTA-ANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV-EKSLDFLKRVMDRLP 208 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~-~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~-~k~~~~l~~a~~~~~ 208 (385)
..+..-..+...+..+ .-+-.+.+-|.=....+...... ...+++..+++.+|.-.- ..=++..++|...++
T Consensus 174 ~GdP~f~d~~~~~~~~~~i~~k~~ytG~vq~~~~~~~~p~------~~~pE~~~Ilvs~GGG~dG~eLi~~~l~A~~~l~ 247 (400)
T COG4671 174 YGDPDFYDPLTEFPFAPAIRAKMRYTGFVQRSLPHLPLPP------HEAPEGFDILVSVGGGADGAELIETALAAAQLLA 247 (400)
T ss_pred ecCccccChhhcCCccHhhhhheeEeEEeeccCcCCCCCC------cCCCccceEEEecCCChhhHHHHHHHHHHhhhCC
Confidence 8776655555554422 11222333333211111000000 001445667788875422 222455556666555
Q ss_pred Cce---EEEEeCCccHH---HHHHHHc-CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 209 EAR---IAFIGDGPYRE---ELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 209 ~~~---l~i~G~g~~~~---~l~~~~~-~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
+.+ +++.|.-.-.. .+...+. ..+|.+..|. +++..++..|+..|.-. .=+++.|-+++|||.+.-+
T Consensus 248 ~l~~~~~ivtGP~MP~~~r~~l~~~A~~~p~i~I~~f~--~~~~~ll~gA~~vVSm~----GYNTvCeILs~~k~aLivP 321 (400)
T COG4671 248 GLNHKWLIVTGPFMPEAQRQKLLASAPKRPHISIFEFR--NDFESLLAGARLVVSMG----GYNTVCEILSFGKPALIVP 321 (400)
T ss_pred CCCcceEEEeCCCCCHHHHHHHHHhcccCCCeEEEEhh--hhHHHHHHhhheeeecc----cchhhhHHHhCCCceEEec
Confidence 544 56667443333 3333333 2479999998 99999999999999443 3468999999999998765
Q ss_pred CCCCC-cc-cccC---CCCCeeEeeC-CCCHHHHHHHHhHhhcC
Q 016648 282 AGGIP-DI-IPED---QDGKIGYLFN-PGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 282 ~~~~~-e~-~~~~---~~~~~g~~~~-~~~~~~l~~~i~~ll~~ 319 (385)
...-. |. +... +-|-...+.+ .-+++.+++++..+++.
T Consensus 322 r~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~ 365 (400)
T COG4671 322 RAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALAR 365 (400)
T ss_pred cCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccC
Confidence 43222 11 1000 1122222222 22688889988888763
No 149
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.67 E-value=0.0096 Score=55.68 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=84.0
Q ss_pred CCCCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEEEeC---C---------------c-----cHHHHHHHHcCCCe
Q 016648 179 EPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGD---G---------------P-----YREELEKMFTGMPA 233 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i~G~---g---------------~-----~~~~l~~~~~~~~i 233 (385)
+++..+.+.+|+... .+-+..+..+++..+.--+..+-. + + ..+.+.+..++.++
T Consensus 261 ~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~ 340 (481)
T PLN02992 261 PNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGF 340 (481)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcCCCE
Confidence 345677778887743 345777888888876532333310 1 0 11223334445579
Q ss_pred EEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeCC----CC
Q 016648 234 VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP----GD 305 (385)
Q Consensus 234 ~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~~----~~ 305 (385)
.+.+++|+.++ ++...+..+- ..+.-++++||+.+|+|+|+.+..+ ....+. +.-+.|..++. -+
T Consensus 341 vv~~W~PQ~~i---L~h~~vg~Fi--tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~--~~~g~gv~~~~~~~~~~ 413 (481)
T PLN02992 341 VVPSWAPQAEI---LAHQAVGGFL--THCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLS--DELGIAVRSDDPKEVIS 413 (481)
T ss_pred EEeecCCHHHH---hCCcccCeeE--ecCchhHHHHHHHcCCCEEecCccchhHHHHHHHH--HHhCeeEEecCCCCccc
Confidence 99999998876 6666653322 3455678999999999999875432 222330 12345555432 37
Q ss_pred HHHHHHHHhHhhcCH
Q 016648 306 LDDCLSKLEPLLYNQ 320 (385)
Q Consensus 306 ~~~l~~~i~~ll~~~ 320 (385)
.+++.+++.+++.++
T Consensus 414 ~~~l~~av~~vm~~~ 428 (481)
T PLN02992 414 RSKIEALVRKVMVEE 428 (481)
T ss_pred HHHHHHHHHHHhcCC
Confidence 899999999999764
No 150
>PLN02210 UDP-glucosyl transferase
Probab=97.67 E-value=0.002 Score=60.10 Aligned_cols=132 Identities=12% Similarity=0.130 Sum_probs=80.1
Q ss_pred CCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEE-EeCC---ccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEE
Q 016648 181 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAF-IGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVF 254 (385)
Q Consensus 181 ~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i-~G~g---~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~ 254 (385)
...+.+.+|+... ..-+..+..+++..+ ..+++ ++.. ...+.+.+.....+..+.+++|+.++ ++.+.+.
T Consensus 269 ~svvyvsfGS~~~~~~~~~~e~a~~l~~~~-~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ~~i---L~h~~vg 344 (456)
T PLN02210 269 SSVVYISFGSMLESLENQVETIAKALKNRG-VPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQEKI---LSHMAIS 344 (456)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHhCC-CCEEEEEeCCccccchhhHHhhccCCCeEEEecCCHHHH---hcCcCcC
Confidence 4567778887643 233666777777664 35444 4421 12233444332234456799988764 7777743
Q ss_pred EEcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCC-CCeeEeeC------CCCHHHHHHHHhHhhcCHH
Q 016648 255 VMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQD-GKIGYLFN------PGDLDDCLSKLEPLLYNQE 321 (385)
Q Consensus 255 v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~-~~~g~~~~------~~~~~~l~~~i~~ll~~~~ 321 (385)
.+- ..+.-++++||+++|+|+|+-+..+ ....+ .+ -+.|..+. .-+.+++.+++++++.+++
T Consensus 345 ~Fi--tH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~---~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~ 417 (456)
T PLN02210 345 CFV--THCGWNSTIETVVAGVPVVAYPSWTDQPIDARLL---VDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPA 417 (456)
T ss_pred eEE--eeCCcccHHHHHHcCCCEEecccccccHHHHHHH---HHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCch
Confidence 332 2344568899999999999865432 22333 22 35665553 2378999999999997643
No 151
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.64 E-value=0.00017 Score=68.64 Aligned_cols=130 Identities=17% Similarity=0.236 Sum_probs=79.9
Q ss_pred CCCcEEEEEeeccc---cccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEE
Q 016648 180 PDKPLIVHVGRLGV---EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 256 (385)
Q Consensus 180 ~~~~~i~~~G~~~~---~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ 256 (385)
+++.+++.+|+... .+-.+.++++++++|. +++..-++.....+ ..|+.+..++|+.++ ++...+-++
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~-~~iW~~~~~~~~~l-----~~n~~~~~W~PQ~~l---L~hp~v~~f 345 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQ-RFIWKYEGEPPENL-----PKNVLIVKWLPQNDL---LAHPRVKLF 345 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTT-EEEEEETCSHGCHH-----HTTEEEESS--HHHH---HTSTTEEEE
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCC-cccccccccccccc-----cceEEEeccccchhh---hhcccceee
Confidence 34566777888642 2236678899999987 77766555322222 247899999998776 666555333
Q ss_pred cCCCCCCcHHHHHHHhcCCcEEEecCC----CCCcccccCCCCCeeEeeCC--CCHHHHHHHHhHhhcCHHHH
Q 016648 257 PSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELR 323 (385)
Q Consensus 257 ps~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~~~~g~~~~~--~~~~~l~~~i~~ll~~~~~~ 323 (385)
- ..|.-+++.||+.+|+|+|+-+.- .....+ ++.+.|...+. -+.+++.++|.++++|+...
T Consensus 346 i--tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~---~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~ 413 (500)
T PF00201_consen 346 I--THGGLNSTQEALYHGVPMLGIPLFGDQPRNAARV---EEKGVGVVLDKNDLTEEELRAAIREVLENPSYK 413 (500)
T ss_dssp E--ES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHH---HHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHH
T ss_pred e--eccccchhhhhhhccCCccCCCCcccCCccceEE---EEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHH
Confidence 3 345678999999999999997642 223333 33445655543 36799999999999997543
No 152
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.61 E-value=0.0024 Score=59.79 Aligned_cols=129 Identities=14% Similarity=0.160 Sum_probs=78.8
Q ss_pred CCCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEE-EeCCc--------cHHHHHHHHcCCCeEEecccChHHHHHHH
Q 016648 180 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAF-IGDGP--------YREELEKMFTGMPAVFTGMLLGEELSQAY 248 (385)
Q Consensus 180 ~~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i-~G~g~--------~~~~l~~~~~~~~i~~~g~~~~~~~~~~~ 248 (385)
+...+.+.+|+... .+.+..+.++++..+. .+++ ++... ..+.+.+.....++.+.+++|+.++ +
T Consensus 282 ~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~-~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~v---L 357 (477)
T PLN02863 282 DHKVVYVCFGSQVVLTKEQMEALASGLEKSGV-HFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVIRGWAPQVAI---L 357 (477)
T ss_pred CCceEEEEeeceecCCHHHHHHHHHHHHhCCC-cEEEEECCCcccccchhhCCHHHHHHhccCCEEecCCCCHHHH---h
Confidence 34566777887633 2346777777777644 4444 44211 1123333344557888999988665 5
Q ss_pred Hh--CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC----CCCcccccCCCCCeeEeeC-----CCCHHHHHHHHhHhh
Q 016648 249 AS--GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFN-----PGDLDDCLSKLEPLL 317 (385)
Q Consensus 249 ~~--adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~~~~g~~~~-----~~~~~~l~~~i~~ll 317 (385)
.. ++++| ..+.-++++||+++|+|+|+-... .....+. +.-+.|.-+. .-+.+++.+++.+++
T Consensus 358 ~h~~v~~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~--~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m 431 (477)
T PLN02863 358 SHRAVGAFL----THCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLV--DELKVAVRVCEGADTVPDSDELARVFMESV 431 (477)
T ss_pred cCCCcCeEE----ecCCchHHHHHHHcCCCEEeCCccccchhhHHHHH--HhhceeEEeccCCCCCcCHHHHHHHHHHHh
Confidence 55 45566 445567899999999999986532 2333320 1224555442 126789999999988
Q ss_pred c
Q 016648 318 Y 318 (385)
Q Consensus 318 ~ 318 (385)
.
T Consensus 432 ~ 432 (477)
T PLN02863 432 S 432 (477)
T ss_pred h
Confidence 4
No 153
>PLN00414 glycosyltransferase family protein
Probab=97.60 E-value=0.0019 Score=59.88 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=89.6
Q ss_pred CCCCCcEEEEEeecccc--ccHHHHHHHHHhCCCceE--EEE---eCC----ccHHHHHHHHcCCCeEEecccChHHHHH
Q 016648 178 GEPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARI--AFI---GDG----PYREELEKMFTGMPAVFTGMLLGEELSQ 246 (385)
Q Consensus 178 ~~~~~~~i~~~G~~~~~--k~~~~l~~a~~~~~~~~l--~i~---G~g----~~~~~l~~~~~~~~i~~~g~~~~~~~~~ 246 (385)
.+++..+.+.+|+.... +.+..+...++. .+..| ++. |.+ ...+.+++..++.+..+.+++|+.++
T Consensus 249 q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~-s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~v-- 325 (446)
T PLN00414 249 FEPGSVVFCAFGTQFFFEKDQFQEFCLGMEL-TGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVWEGWVEQPLI-- 325 (446)
T ss_pred CCCCceEEEeecccccCCHHHHHHHHHHHHH-cCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEEeccCCHHHH--
Confidence 34456677788887543 233333333333 23333 222 111 12234555555567888899998886
Q ss_pred HHHhC--cEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC----CCCcccccCCCCCeeEeeCC-----CCHHHHHHHHhH
Q 016648 247 AYASG--DVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNP-----GDLDDCLSKLEP 315 (385)
Q Consensus 247 ~~~~a--di~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~~~~g~~~~~-----~~~~~l~~~i~~ 315 (385)
++.+ +++| ..+.-++++||+++|+|+|+.+.. .....+. +.-+.|..+.. -+.+++.+++++
T Consensus 326 -L~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~--~~~g~g~~~~~~~~~~~~~~~i~~~v~~ 398 (446)
T PLN00414 326 -LSHPSVGCFV----NHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLT--EELEVSVKVQREDSGWFSKESLRDTVKS 398 (446)
T ss_pred -hcCCccceEE----ecCchhHHHHHHHcCCCEEecCcccchHHHHHHHH--HHhCeEEEeccccCCccCHHHHHHHHHH
Confidence 6666 4466 345577899999999999986543 2233331 12355655531 388999999999
Q ss_pred hhcCH-HHHHHHHHHHHHHHHh
Q 016648 316 LLYNQ-ELRETMGQAARQEMEK 336 (385)
Q Consensus 316 ll~~~-~~~~~~~~~a~~~~~~ 336 (385)
++.++ +..+++++++++..+.
T Consensus 399 ~m~~~~e~g~~~r~~a~~~~~~ 420 (446)
T PLN00414 399 VMDKDSEIGNLVKRNHKKLKET 420 (446)
T ss_pred HhcCChhhHHHHHHHHHHHHHH
Confidence 99764 4566677777665433
No 154
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.58 E-value=0.0099 Score=56.01 Aligned_cols=131 Identities=11% Similarity=0.069 Sum_probs=78.1
Q ss_pred CCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEEEeCCc-------------c-----HHHHHHHHcCCCeEEecccC
Q 016648 181 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGDGP-------------Y-----REELEKMFTGMPAVFTGMLL 240 (385)
Q Consensus 181 ~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i~G~g~-------------~-----~~~l~~~~~~~~i~~~g~~~ 240 (385)
+..+.+.+|+... .+-+..+..+++..+. +++.+-.++ . .+.+.+.. ..++.+.+++|
T Consensus 274 ~svvyvsfGS~~~~~~~~~~~la~~l~~~~~-~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~-~~~g~v~~W~P 351 (481)
T PLN02554 274 KSVVFLCFGSMGGFSEEQAREIAIALERSGH-RFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT-KDIGKVIGWAP 351 (481)
T ss_pred CcEEEEeccccccCCHHHHHHHHHHHHHcCC-CeEEEEcCCcccccccccccccchhhhCChHHHHHh-ccCceEEeeCC
Confidence 4466778888633 3467788888887754 555432210 0 11222222 23567779999
Q ss_pred hHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC----CCC-cccccCCCCCeeEeeC-------------
Q 016648 241 GEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIP-DIIPEDQDGKIGYLFN------------- 302 (385)
Q Consensus 241 ~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~-e~~~~~~~~~~g~~~~------------- 302 (385)
+.++... ..+.++| ..+.-++++||+.+|+|+|+.... ... ..+ +.-+.|..+.
T Consensus 352 Q~~iL~H-~~v~~Fv----tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v---~~~g~Gv~l~~~~~~~~~~~~~~ 423 (481)
T PLN02554 352 QVAVLAK-PAIGGFV----THCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMV---EELGLAVEIRKYWRGDLLAGEME 423 (481)
T ss_pred HHHHhCC-cccCccc----ccCccchHHHHHHcCCCEEecCccccchhhHHHHH---HHhCceEEeeccccccccccccC
Confidence 8776321 3344455 345567899999999999987543 222 222 2233454442
Q ss_pred CCCHHHHHHHHhHhhc-CHH
Q 016648 303 PGDLDDCLSKLEPLLY-NQE 321 (385)
Q Consensus 303 ~~~~~~l~~~i~~ll~-~~~ 321 (385)
.-+.+++.++|++++. +++
T Consensus 424 ~~~~e~l~~av~~vm~~~~~ 443 (481)
T PLN02554 424 TVTAEEIERGIRCLMEQDSD 443 (481)
T ss_pred eEcHHHHHHHHHHHhcCCHH
Confidence 1278999999999996 543
No 155
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=97.51 E-value=0.00073 Score=53.98 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=62.7
Q ss_pred cccchHHHHHHhhccCCCEEEeCCCchhHH-HHHHHHHH-h-CCCEEEEEecCCCcccccccccccchhHHHHHHHHHHh
Q 016648 48 SLALSPRIISEVARFKPDIIHASSPGIMVF-GALIIAKL-L-CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA 124 (385)
Q Consensus 48 ~~~~~~~l~~~i~~~~pDiI~~~~~~~~~~-~~~~~~~~-~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (385)
.....+++.+.+++.+||+|++..|..... ...+..+. . ++|++..+.|..... +. ++...
T Consensus 74 ~~~~~~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H-~~---------------W~~~~ 137 (169)
T PF06925_consen 74 SRLFARRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVH-PF---------------WIHPG 137 (169)
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCC-cC---------------eecCC
Confidence 444566899999999999999999855444 33232232 3 577765555542211 11 24577
Q ss_pred CCeEEEcChhHHHHHHHhcccCCCcEEEeeC
Q 016648 125 ADLTLVPSVAIGKDLEAARVTAANKIRIWKK 155 (385)
Q Consensus 125 ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~ 155 (385)
+|..++.|+++++.+.+.| .+++++.+..-
T Consensus 138 ~D~y~Vase~~~~~l~~~G-i~~~~I~vtGi 167 (169)
T PF06925_consen 138 VDRYFVASEEVKEELIERG-IPPERIHVTGI 167 (169)
T ss_pred CCEEEECCHHHHHHHHHcC-CChhHEEEeCc
Confidence 9999999999999999966 57888887643
No 156
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.50 E-value=0.0014 Score=60.94 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=84.9
Q ss_pred CCCCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEE-EeCC----c-----cHHHHHHHHcCCCeEEecccChHHHHH
Q 016648 179 EPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAF-IGDG----P-----YREELEKMFTGMPAVFTGMLLGEELSQ 246 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i-~G~g----~-----~~~~l~~~~~~~~i~~~g~~~~~~~~~ 246 (385)
+++..+.+.+|+... .+-+..+..+++..+. .|+. +..+ . ..+.+.+... .+..+.+++|+.++
T Consensus 262 ~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~-~FlWv~r~~~~~~~~~~~~lp~~f~er~~-~~g~v~~w~PQ~~i-- 337 (451)
T PLN02410 262 KKNSVIFVSLGSLALMEINEVMETASGLDSSNQ-QFLWVIRPGSVRGSEWIESLPKEFSKIIS-GRGYIVKWAPQKEV-- 337 (451)
T ss_pred CCCcEEEEEccccccCCHHHHHHHHHHHHhcCC-CeEEEEccCcccccchhhcCChhHHHhcc-CCeEEEccCCHHHH--
Confidence 345677778887643 2445666777776654 3443 3311 1 1223333332 35677799998886
Q ss_pred HHHhCcE--EEEcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCC-CeeEee-CCCCHHHHHHHHhHhhc
Q 016648 247 AYASGDV--FVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDG-KIGYLF-NPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 247 ~~~~adi--~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~-~~g~~~-~~~~~~~l~~~i~~ll~ 318 (385)
+...++ +| ..+.-++++||+++|+|+|+....+ ....+ .+. +.|+-+ ..-+.+++++++++++.
T Consensus 338 -L~h~~v~~fv----tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~---~~~~~~G~~~~~~~~~~~v~~av~~lm~ 409 (451)
T PLN02410 338 -LSHPAVGGFW----SHCGWNSTLESIGEGVPMICKPFSSDQKVNARYL---ECVWKIGIQVEGDLDRGAVERAVKRLMV 409 (451)
T ss_pred -hCCCccCeee----ecCchhHHHHHHHcCCCEEeccccccCHHHHHHH---HHHhCeeEEeCCcccHHHHHHHHHHHHc
Confidence 666555 55 3445678999999999999865432 22322 122 455544 33478999999999998
Q ss_pred CHHHHHHHHHHHHHH
Q 016648 319 NQELRETMGQAARQE 333 (385)
Q Consensus 319 ~~~~~~~~~~~a~~~ 333 (385)
+++ .+++++++++.
T Consensus 410 ~~~-~~~~r~~a~~l 423 (451)
T PLN02410 410 EEE-GEEMRKRAISL 423 (451)
T ss_pred CCc-HHHHHHHHHHH
Confidence 754 33444444443
No 157
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=97.49 E-value=0.00017 Score=61.37 Aligned_cols=90 Identities=18% Similarity=0.128 Sum_probs=54.0
Q ss_pred hHHHHHHhhc--cCCCEEEeCCCchhHHHHHHHHHHh-------CCCEEEEEecCCCccc-ccc-----cccccc-----
Q 016648 52 SPRIISEVAR--FKPDIIHASSPGIMVFGALIIAKLL-------CVPIVMSYHTHVPVYI-PRY-----TFSWLV----- 111 (385)
Q Consensus 52 ~~~l~~~i~~--~~pDiI~~~~~~~~~~~~~~~~~~~-------~~p~v~~~h~~~~~~~-~~~-----~~~~~~----- 111 (385)
.+.+...+++ .+|||||+|++.....+.++ +... ++|+++|+|+...... +.. ......
T Consensus 120 s~a~le~~~~l~~~pDIIH~hDW~tal~p~~l-k~~~~~~~~~~~~~~v~TIHN~~yqg~~~~~~~~~~gl~~~~~~~~~ 198 (245)
T PF08323_consen 120 SRAALELLKKLGWKPDIIHCHDWHTALAPLYL-KERYQQDPFFANIPTVFTIHNLEYQGIFPPEDLKALGLPDEYFQNLD 198 (245)
T ss_dssp HHHHHHHHCTCT-S-SEEEEECGGGTTHHHHH-HHCCSS------SEEEEEESSTT---EEEGGGGGCTT-GGGGS-STT
T ss_pred HHHHHHHHHhhCCCCCEEEecCchHHHHHHHh-ccccccccccccceeEEEEcccccCCcCCHHHHHHcCCCHHHhcccc
Confidence 4456667776 59999999998665554443 3333 5999999998432211 100 000000
Q ss_pred ----hhHHHHHHHHHHhCCeEEEcChhHHHHHHHh
Q 016648 112 ----KPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 142 (385)
Q Consensus 112 ----~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 142 (385)
...-.+.+..+..||.|.++|+..++++.+.
T Consensus 199 ~~~~~~~in~lk~gi~~AD~v~TVS~~Ya~Ei~~~ 233 (245)
T PF08323_consen 199 EYEFYGQINFLKAGIVYADKVTTVSPTYAREIQTP 233 (245)
T ss_dssp TTEETTEEEHHHHHHHHSSEEEESSHHHHHHTTSH
T ss_pred ccccccccCHHHHHHHhcCEeeeCCHHHHHHHhCc
Confidence 0001256688899999999999998887654
No 158
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.49 E-value=0.0054 Score=56.88 Aligned_cols=144 Identities=10% Similarity=0.105 Sum_probs=81.9
Q ss_pred CCCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCc----cHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEE
Q 016648 180 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGP----YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 255 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~----~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v 255 (385)
++..+.+.+|+.... ..+.+.+++..+....++.+=..+ ..+.+.+.....++.+.+++|+.++ ++...+..
T Consensus 263 ~~svvyvsfGS~~~~-~~~~~~ela~gLs~~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ~~i---L~H~~v~~ 338 (449)
T PLN02173 263 QGSVVYIAFGSMAKL-SSEQMEEIASAISNFSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQLQV---LSNKAIGC 338 (449)
T ss_pred CCceEEEEecccccC-CHHHHHHHHHHhcCCCEEEEEeccchhcccchHHHhhcCCceEEeCCCCHHHH---hCCCccce
Confidence 345677788876432 223333333333333343332211 1122333333457888899998775 77776444
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEecCC----CCCcccccCCCC-CeeEeeCC------CCHHHHHHHHhHhhcCHHHHH
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDG-KIGYLFNP------GDLDDCLSKLEPLLYNQELRE 324 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~~-~~g~~~~~------~~~~~l~~~i~~ll~~~~~~~ 324 (385)
+-+ .+.-++++||+++|+|+|+.+.- .+...+ .+. +.|.-+.. -+.+++.+++++++.+++ .+
T Consensus 339 Fvt--HcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v---~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~-~~ 412 (449)
T PLN02173 339 FMT--HCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYI---QDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEK-SK 412 (449)
T ss_pred EEe--cCccchHHHHHHcCCCEEecCchhcchHHHHHH---HHHhCceEEEeecccCCcccHHHHHHHHHHHhcCCh-HH
Confidence 333 35567899999999999987533 223333 221 34444321 168999999999997643 34
Q ss_pred HHHHHHHHH
Q 016648 325 TMGQAARQE 333 (385)
Q Consensus 325 ~~~~~a~~~ 333 (385)
++++++++.
T Consensus 413 ~~r~~a~~~ 421 (449)
T PLN02173 413 EMKENAGKW 421 (449)
T ss_pred HHHHHHHHH
Confidence 555554444
No 159
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=97.39 E-value=0.072 Score=46.93 Aligned_cols=201 Identities=18% Similarity=0.174 Sum_probs=109.7
Q ss_pred hHHHHHHhhccCCCEEEeCCCchh----------H-HHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHH
Q 016648 52 SPRIISEVARFKPDIIHASSPGIM----------V-FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKF 120 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~----------~-~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (385)
...+.+.+++. |++++-+.+.+ . +....+++..|+|+++.-.+..|... ...+...+.
T Consensus 55 ~~~~~~~l~~~--D~vI~gGG~l~~d~~~~~~~~~~~~~~~~a~~~~k~~~~~g~giGP~~~---------~~~r~~~~~ 123 (298)
T TIGR03609 55 LLAVLRALRRA--DVVIWGGGSLLQDVTSFRSLLYYLGLMRLARLFGKPVILWGQGIGPLRR---------RLSRWLVRR 123 (298)
T ss_pred HHHHHHHHHHC--CEEEECCcccccCCcccccHHHHHHHHHHHHHcCCCEEEEecccCCcCC---------HHHHHHHHH
Confidence 34566666555 88877532111 0 11234567789999887776654321 122346677
Q ss_pred HHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEE-Eeecc--ccccH
Q 016648 121 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVH-VGRLG--VEKSL 197 (385)
Q Consensus 121 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~G~~~--~~k~~ 197 (385)
+++.+|.+.+=.+...+.+++.+. ++.+.|..+ ..-+...... . ...++..+++ +.... ....+
T Consensus 124 ~l~~~~~i~vRD~~S~~~l~~~g~----~i~~~~D~a---~~l~~~~~~~-----~-~~~~~~~i~i~~r~~~~~~~~~~ 190 (298)
T TIGR03609 124 VLRGCRAISVRDAASYRLLKRLGI----PAELAADPV---WLLPPEPWPG-----G-EPLPEPVIVVSLRPWPLLDVSRL 190 (298)
T ss_pred HHccCCEEEEeCHHHHHHHHHhCC----CceEeCChh---hhCCCCcccc-----c-ccCCCCeEEEEECCCCcCCHHHH
Confidence 899999999988888888776543 455555322 2111100000 0 1112334443 32221 12234
Q ss_pred HHHHHHHHhC---CCceEEEEeC--CccHHHHHHHHcCC--CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHH
Q 016648 198 DFLKRVMDRL---PEARIAFIGD--GPYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 270 (385)
Q Consensus 198 ~~l~~a~~~~---~~~~l~i~G~--g~~~~~l~~~~~~~--~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea 270 (385)
+.+.+++..+ .+.+++++.. ..+.+..+++.... ...+....+.+|+..++++||++|.... ..++=|
T Consensus 191 ~~l~~~l~~l~~~~g~~v~~i~~~~~~D~~~~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~Rl-----H~~I~A 265 (298)
T TIGR03609 191 LRLLRALDRLQRDTGAFVLFLPFQQPQDLPLARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRL-----HALILA 265 (298)
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCCcchhHHHHHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEech-----HHHHHH
Confidence 5555555554 3566666552 23333333332221 1222355566899999999999884432 245669
Q ss_pred HhcCCcEEEec
Q 016648 271 MSSGIPVVGVR 281 (385)
Q Consensus 271 ~a~G~PvI~s~ 281 (385)
+.+|+|+|+-.
T Consensus 266 ~~~gvP~i~i~ 276 (298)
T TIGR03609 266 AAAGVPFVALS 276 (298)
T ss_pred HHcCCCEEEee
Confidence 99999999653
No 160
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.34 E-value=0.0052 Score=57.77 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=76.8
Q ss_pred CCCcEEEEEeecc--ccccHHHHHHHHHhCCCceEEE-EeCCc---------cHHHHHHHHcCCCeEEecccChHHHHHH
Q 016648 180 PDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAF-IGDGP---------YREELEKMFTGMPAVFTGMLLGEELSQA 247 (385)
Q Consensus 180 ~~~~~i~~~G~~~--~~k~~~~l~~a~~~~~~~~l~i-~G~g~---------~~~~l~~~~~~~~i~~~g~~~~~~~~~~ 247 (385)
.+..+.+.+|++. ..+.+..+..+++..+ .++++ ++... ..+.+.+...+ +..+.+++|+.++
T Consensus 279 ~~svvyvsfGS~~~~~~~~~~ela~~l~~~~-~~flw~~~~~~~~~~~~~~~lp~~~~er~~~-rg~v~~w~PQ~~i--- 353 (475)
T PLN02167 279 ESSVVFLCFGSLGSLPAPQIKEIAQALELVG-CRFLWSIRTNPAEYASPYEPLPEGFMDRVMG-RGLVCGWAPQVEI--- 353 (475)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCC-CcEEEEEecCcccccchhhhCChHHHHHhcc-CeeeeccCCHHHH---
Confidence 3456677788763 2345777777887764 35544 43211 11122222222 3466799988776
Q ss_pred HHhCc--EEEEcCCCCCCcHHHHHHHhcCCcEEEecCC----CCCcc-cccCCCCCeeEeeC---------CCCHHHHHH
Q 016648 248 YASGD--VFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDI-IPEDQDGKIGYLFN---------PGDLDDCLS 311 (385)
Q Consensus 248 ~~~ad--i~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~-~~~~~~~~~g~~~~---------~~~~~~l~~ 311 (385)
++... ++| ..+.-++++||+++|+|+|+-... ..... + +.-+.|..+. .-+.+++++
T Consensus 354 L~h~~vg~fv----tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~---~~~g~g~~~~~~~~~~~~~~~~~~~l~~ 426 (475)
T PLN02167 354 LAHKAIGGFV----SHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMV---KELGLAVELRLDYVSAYGEIVKADEIAG 426 (475)
T ss_pred hcCcccCeEE----eeCCcccHHHHHHcCCCEEeccccccchhhHHHHH---HHhCeeEEeecccccccCCcccHHHHHH
Confidence 66644 455 334456889999999999986543 22222 2 2334555442 127899999
Q ss_pred HHhHhhcCH
Q 016648 312 KLEPLLYNQ 320 (385)
Q Consensus 312 ~i~~ll~~~ 320 (385)
++++++.++
T Consensus 427 av~~~m~~~ 435 (475)
T PLN02167 427 AVRSLMDGE 435 (475)
T ss_pred HHHHHhcCC
Confidence 999999754
No 161
>PLN02207 UDP-glycosyltransferase
Probab=97.33 E-value=0.025 Score=52.85 Aligned_cols=187 Identities=12% Similarity=0.048 Sum_probs=98.5
Q ss_pred HHhCCeEEEcChhHHHHH-HHhccc-C-CCcEEEeeCCCCCCCCCCCC-----CChhhHhhhcCCCCCCcEEEEEeeccc
Q 016648 122 HRAADLTLVPSVAIGKDL-EAARVT-A-ANKIRIWKKGVDSESFHPRF-----RSSEMRWRLSNGEPDKPLIVHVGRLGV 193 (385)
Q Consensus 122 ~~~ad~ii~~s~~~~~~~-~~~~~~-~-~~~i~vi~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~G~~~~ 193 (385)
.+++|.+++.|....|.- .+.... + ..++..|..-..... .+.. ...+...=+...+++..+.+.+|+...
T Consensus 209 ~~~~~~vlvNtf~~LE~~~~~~~~~~~~~p~v~~VGPl~~~~~-~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~ 287 (468)
T PLN02207 209 FTKANGILVNSSFDIEPYSVNHFLDEQNYPSVYAVGPIFDLKA-QPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGR 287 (468)
T ss_pred cccCCEEEEEchHHHhHHHHHHHHhccCCCcEEEecCCccccc-CCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcC
Confidence 467999999998777652 222210 1 123443332211110 0110 011111112222345667777887632
Q ss_pred --cccHHHHHHHHHhCCCceEEE-EeCCcc--H----HHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCc
Q 016648 194 --EKSLDFLKRVMDRLPEARIAF-IGDGPY--R----EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 264 (385)
Q Consensus 194 --~k~~~~l~~a~~~~~~~~l~i-~G~g~~--~----~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~ 264 (385)
.+-+..+..+++..+. .++. +..... . +.+.+... .+..+.+++|+.++ ++...+..+- ..+.-
T Consensus 288 ~~~~q~~ela~~l~~~~~-~flW~~r~~~~~~~~~lp~~f~er~~-~~g~i~~W~PQ~~I---L~H~~vg~Fv--TH~Gw 360 (468)
T PLN02207 288 LRGPLVKEIAHGLELCQY-RFLWSLRTEEVTNDDLLPEGFLDRVS-GRGMICGWSPQVEI---LAHKAVGGFV--SHCGW 360 (468)
T ss_pred CCHHHHHHHHHHHHHCCC-cEEEEEeCCCccccccCCHHHHhhcC-CCeEEEEeCCHHHH---hcccccceee--ecCcc
Confidence 3447778888888764 4444 332111 1 22222222 35667799999887 5555443222 33445
Q ss_pred HHHHHHHhcCCcEEEecCC----CCCcccccCCCCCeeEee---------CCCCHHHHHHHHhHhhc
Q 016648 265 LVVLEAMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLF---------NPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 265 ~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~~~~g~~~---------~~~~~~~l~~~i~~ll~ 318 (385)
++++||+.+|+|+|+-... ....++. +.-+.|+-+ +.-+.+++.++|++++.
T Consensus 361 nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~--~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~ 425 (468)
T PLN02207 361 NSIVESLWFGVPIVTWPMYAEQQLNAFLMV--KELKLAVELKLDYRVHSDEIVNANEIETAIRCVMN 425 (468)
T ss_pred ccHHHHHHcCCCEEecCccccchhhHHHHH--HHhCceEEEecccccccCCcccHHHHHHHHHHHHh
Confidence 6889999999999986543 2223220 112344422 12277899999999996
No 162
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=97.28 E-value=0.0093 Score=55.43 Aligned_cols=132 Identities=14% Similarity=0.104 Sum_probs=79.2
Q ss_pred CCCcEEEEEeecc--ccccHHHHHHHHHhCCCceEEEEeCC---------cc------HHHHHHHHcCCCeEEecccChH
Q 016648 180 PDKPLIVHVGRLG--VEKSLDFLKRVMDRLPEARIAFIGDG---------PY------REELEKMFTGMPAVFTGMLLGE 242 (385)
Q Consensus 180 ~~~~~i~~~G~~~--~~k~~~~l~~a~~~~~~~~l~i~G~g---------~~------~~~l~~~~~~~~i~~~g~~~~~ 242 (385)
++..+.+.+|+.. ..+-++.+..+++..+.--+..+... .. .+.+.+.. ..+..+.+++|+.
T Consensus 260 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~-~~~g~v~~W~PQ~ 338 (455)
T PLN02152 260 ESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHEL-EEVGMIVSWCSQI 338 (455)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhc-cCCeEEEeeCCHH
Confidence 3466777888763 34567788888888765333334321 10 01111112 2356778999887
Q ss_pred HHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC----CCCcccccCCC-CCeeEeeC-----CCCHHHHHHH
Q 016648 243 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG----GIPDIIPEDQD-GKIGYLFN-----PGDLDDCLSK 312 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~----~~~e~~~~~~~-~~~g~~~~-----~~~~~~l~~~ 312 (385)
++ ++..++..+-+ .+.-++++||+.+|+|+|+-+.. .....+ .+ -+.|+-+. .-+.+++.++
T Consensus 339 ~i---L~h~~vg~fvt--H~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~---~~~~~~G~~~~~~~~~~~~~e~l~~a 410 (455)
T PLN02152 339 EV---LRHRAVGCFVT--HCGWSSSLESLVLGVPVVAFPMWSDQPANAKLL---EEIWKTGVRVRENSEGLVERGEIRRC 410 (455)
T ss_pred HH---hCCcccceEEe--eCCcccHHHHHHcCCCEEeccccccchHHHHHH---HHHhCceEEeecCcCCcCcHHHHHHH
Confidence 75 77777644433 34567899999999999986542 222233 11 02333331 1278999999
Q ss_pred HhHhhcCH
Q 016648 313 LEPLLYNQ 320 (385)
Q Consensus 313 i~~ll~~~ 320 (385)
+.++++++
T Consensus 411 v~~vm~~~ 418 (455)
T PLN02152 411 LEAVMEEK 418 (455)
T ss_pred HHHHHhhh
Confidence 99999754
No 163
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.27 E-value=0.032 Score=49.97 Aligned_cols=95 Identities=22% Similarity=0.385 Sum_probs=65.3
Q ss_pred CcEEEEEe-ecccccc--HHHHHHHHHhC--CCceEEEEeCCccHHHHHHHHcCCC--eEEecccChHHHHHHHHhCcEE
Q 016648 182 KPLIVHVG-RLGVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVF 254 (385)
Q Consensus 182 ~~~i~~~G-~~~~~k~--~~~l~~a~~~~--~~~~l~i~G~g~~~~~l~~~~~~~~--i~~~g~~~~~~~~~~~~~adi~ 254 (385)
+.+++..| +....|. .+.+.+.++.+ ...+++++|+..+.+..+++....+ +.+.|..+-+|+..+++.||++
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li~~a~l~ 255 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALIAGADLV 255 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHHhcCCEE
Confidence 45566777 4445555 23444444433 2378999998766666666665543 2289999989999999999999
Q ss_pred EEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 255 VMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 255 v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
|.+.. |..-+ |.|.|+|+|+--
T Consensus 256 I~~DS----g~~Hl-AaA~~~P~I~iy 277 (334)
T COG0859 256 IGNDS----GPMHL-AAALGTPTIALY 277 (334)
T ss_pred EccCC----hHHHH-HHHcCCCEEEEE
Confidence 96653 44444 889999999764
No 164
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=97.23 E-value=0.039 Score=48.56 Aligned_cols=190 Identities=17% Similarity=0.127 Sum_probs=102.5
Q ss_pred HhhccCCCEEEeCCCchhHHHHHHHHHHhCC--CEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhH
Q 016648 58 EVARFKPDIIHASSPGIMVFGALIIAKLLCV--PIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAI 135 (385)
Q Consensus 58 ~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~--p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 135 (385)
.+..-.||+|+..+...... .+.+++..|. +.|. +.+ |.. ..+..|.||++.++
T Consensus 52 ~~~~~~pdLiIsaGr~t~~~-~~~l~r~~gg~~~~V~-i~~--P~~-------------------~~~~FDlvi~p~HD- 107 (311)
T PF06258_consen 52 ALEPPWPDLIISAGRRTAPA-ALALRRASGGRTKTVQ-IMD--PRL-------------------PPRPFDLVIVPEHD- 107 (311)
T ss_pred cccCCCCcEEEECCCchHHH-HHHHHHHcCCCceEEE-EcC--CCC-------------------CccccCEEEECccc-
Confidence 34456799999998754443 4445565555 4443 333 211 13668999998876
Q ss_pred HHHHHHhcccCCCcEEEee---CCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccc--cHH---HHHHHHHhC
Q 016648 136 GKDLEAARVTAANKIRIWK---KGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK--SLD---FLKRVMDRL 207 (385)
Q Consensus 136 ~~~~~~~~~~~~~~i~vi~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k--~~~---~l~~a~~~~ 207 (385)
......++.... |.++.+..... ......++. ..+.+.+.+.+|.-+... +.+ .+++.+..+
T Consensus 108 -------~~~~~~Nvl~t~ga~~~i~~~~l~~a--~~~~~~~~~-~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~ 177 (311)
T PF06258_consen 108 -------RLPRGPNVLPTLGAPNRITPERLAEA--AAAWAPRLA-ALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAAL 177 (311)
T ss_pred -------CcCCCCceEecccCCCcCCHHHHHHH--HHhhhhhhc-cCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHH
Confidence 111223443322 22222211110 000111111 233455677788543322 222 333333222
Q ss_pred ---CCceEEEEeCCccHH----HHHHHHcC-CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 208 ---PEARIAFIGDGPYRE----ELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 208 ---~~~~l~i~G~g~~~~----~l~~~~~~-~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
.+..+.|..+....+ .+.+..+. ..+.+...-+..-+..+|+.||.++++.- .-..+.||++.|+||..
T Consensus 178 ~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~D---SvSMvsEA~~tG~pV~v 254 (311)
T PF06258_consen 178 AAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTED---SVSMVSEAAATGKPVYV 254 (311)
T ss_pred HHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCc---cHHHHHHHHHcCCCEEE
Confidence 347888888654333 33333322 24645555555568899999999997743 23458899999999998
Q ss_pred ecCCC
Q 016648 280 VRAGG 284 (385)
Q Consensus 280 s~~~~ 284 (385)
-..++
T Consensus 255 ~~l~~ 259 (311)
T PF06258_consen 255 LPLPG 259 (311)
T ss_pred ecCCC
Confidence 77665
No 165
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=97.15 E-value=0.013 Score=49.97 Aligned_cols=97 Identities=18% Similarity=0.232 Sum_probs=59.6
Q ss_pred CCCcEEEEEeeccccccH--HHHHHHHHhCC--CceEEEEeCCcc--HHHHHHHHcCC---CeEEecccChHHHHHHHHh
Q 016648 180 PDKPLIVHVGRLGVEKSL--DFLKRVMDRLP--EARIAFIGDGPY--REELEKMFTGM---PAVFTGMLLGEELSQAYAS 250 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~~--~~l~~a~~~~~--~~~l~i~G~g~~--~~~l~~~~~~~---~i~~~g~~~~~~~~~~~~~ 250 (385)
++..+++..|.-.+.|.+ +.+.++++.+. ...++++|.+.+ .+......... .+.+.|..+-.|+..+++.
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali~~ 183 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALISR 183 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHHHT
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHHhc
Confidence 445677778877677764 34666666653 367888887766 33333444332 4778888888999999999
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
||++|.+-. |. +-=|.+.|+|+|+--
T Consensus 184 a~~~I~~Dt----g~-~HlA~a~~~p~v~lf 209 (247)
T PF01075_consen 184 ADLVIGNDT----GP-MHLAAALGTPTVALF 209 (247)
T ss_dssp SSEEEEESS----HH-HHHHHHTT--EEEEE
T ss_pred CCEEEecCC----hH-HHHHHHHhCCEEEEe
Confidence 999997653 33 334899999999863
No 166
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.13 E-value=0.12 Score=43.14 Aligned_cols=191 Identities=16% Similarity=0.126 Sum_probs=104.2
Q ss_pred ccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHH
Q 016648 61 RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLE 140 (385)
Q Consensus 61 ~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~ 140 (385)
+..||+++..+-....+ .+.+++..+.+.++.+.+. .. =.+..|.||++-.+..+...
T Consensus 68 ~~~Pdl~I~aGrrta~l-~~~lkk~~~~~~vVqI~~P--rl-------------------p~~~fDlvivp~HD~~~~~s 125 (329)
T COG3660 68 EQRPDLIITAGRRTAPL-AFYLKKKFGGIKVVQIQDP--RL-------------------PYNHFDLVIVPYHDWREELS 125 (329)
T ss_pred cCCCceEEecccchhHH-HHHHHHhcCCceEEEeeCC--CC-------------------CcccceEEeccchhhhhhhh
Confidence 45699999988654444 3445566665666655552 11 13557889988877776643
Q ss_pred HhcccCCCcEEEeeCCCCCCCCCCCC-CChhhHhhhcCCCCCCcEEEEEeeccccccH-----HHHHHHH-HhC--CCce
Q 016648 141 AARVTAANKIRIWKKGVDSESFHPRF-RSSEMRWRLSNGEPDKPLIVHVGRLGVEKSL-----DFLKRVM-DRL--PEAR 211 (385)
Q Consensus 141 ~~~~~~~~~i~vi~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~-----~~l~~a~-~~~--~~~~ 211 (385)
..+ .++..+ +|..-..-+... ...+..+.+ ......++-+++|.-.+.-.+ ..+..++ +.+ ....
T Consensus 126 ~~~----~Nilpi-~Gs~h~Vt~~~lAa~~e~~~~~-~p~~rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~ 199 (329)
T COG3660 126 DQG----PNILPI-NGSPHNVTSQRLAALREAFKHL-LPLPRQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGS 199 (329)
T ss_pred ccC----Cceeec-cCCCCcccHHHhhhhHHHHHhh-CCCCCceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCce
Confidence 322 244333 233221111111 111111222 234567788889876443322 2222222 222 3567
Q ss_pred EEEEeCCccHHHHHHHHcCC----CeEEeccc--ChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecC
Q 016648 212 IAFIGDGPYREELEKMFTGM----PAVFTGML--LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 212 l~i~G~g~~~~~l~~~~~~~----~i~~~g~~--~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~ 282 (385)
+++.-+....+.++..++.. .+.+-..- ...-...+|+.||.+|...-. =+...||.+.|+||-+-.-
T Consensus 200 ~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaDS---inM~sEAasTgkPv~~~~~ 273 (329)
T COG3660 200 FLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTADS---INMCSEAASTGKPVFILEP 273 (329)
T ss_pred EEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcceEEEecch---hhhhHHHhccCCCeEEEec
Confidence 77766655556666665542 23333222 224577889999999976432 2335799999999986543
No 167
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.12 E-value=0.038 Score=48.16 Aligned_cols=81 Identities=23% Similarity=0.242 Sum_probs=55.2
Q ss_pred HHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHh
Q 016648 197 LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 272 (385)
Q Consensus 197 ~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a 272 (385)
+..+++.+..- +.+++++|...+.+..++.... ..+.+.|..+-.|+..+++.||++|.+.. |..-+ |.+
T Consensus 142 ~~~l~~~l~~~-~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds----g~~Hl-A~a 215 (279)
T cd03789 142 FAALADRLLAR-GARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDS----GPMHL-AAA 215 (279)
T ss_pred HHHHHHHHHHC-CCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCC----HHHHH-HHH
Confidence 44444444433 7899999977666655554432 22556777777999999999999997642 44444 579
Q ss_pred cCCcEEEecCC
Q 016648 273 SGIPVVGVRAG 283 (385)
Q Consensus 273 ~G~PvI~s~~~ 283 (385)
+|+|+|+--.+
T Consensus 216 ~~~p~i~l~g~ 226 (279)
T cd03789 216 LGTPTVALFGP 226 (279)
T ss_pred cCCCEEEEECC
Confidence 99999976433
No 168
>PLN03015 UDP-glucosyl transferase
Probab=97.12 E-value=0.081 Score=49.39 Aligned_cols=147 Identities=14% Similarity=0.087 Sum_probs=83.3
Q ss_pred CCCCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEEEeC-C-----------c-----cHHHHHHHHcCCCeEEeccc
Q 016648 179 EPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFIGD-G-----------P-----YREELEKMFTGMPAVFTGML 239 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i~G~-g-----------~-----~~~~l~~~~~~~~i~~~g~~ 239 (385)
+++..+.+.+|+... ..-+..+..+++..+. .|+.+=. . . ..+.+.+..++.++.+.+++
T Consensus 265 ~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~-~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~ 343 (470)
T PLN03015 265 GERSVVYVCLGSGGTLTFEQTVELAWGLELSGQ-RFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWA 343 (470)
T ss_pred CCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCC-cEEEEEecCccccccccccccchhhcCChHHHHhhccCceEEEecC
Confidence 345666777787733 3446777777877754 4443321 0 0 11223333344457888999
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeC------CCCHHHH
Q 016648 240 LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN------PGDLDDC 309 (385)
Q Consensus 240 ~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~------~~~~~~l 309 (385)
|+.++ ++...+..+- ..+.-++++||+++|+|+|+.+.-+ ....+. +.-..|.-+. .-+.+++
T Consensus 344 PQ~~v---L~h~~vg~fv--tH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~--~~~gvg~~~~~~~~~~~v~~e~i 416 (470)
T PLN03015 344 PQVEI---LSHRSIGGFL--SHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLT--EEIGVAVRTSELPSEKVIGREEV 416 (470)
T ss_pred CHHHH---hccCccCeEE--ecCCchhHHHHHHcCCCEEecccccchHHHHHHHH--HHhCeeEEecccccCCccCHHHH
Confidence 98887 4454443322 2344568999999999999875422 112120 1223444332 2378899
Q ss_pred HHHHhHhhcC-HHHHHHHHHHHHHH
Q 016648 310 LSKLEPLLYN-QELRETMGQAARQE 333 (385)
Q Consensus 310 ~~~i~~ll~~-~~~~~~~~~~a~~~ 333 (385)
.++++++++. .++-+++++++++.
T Consensus 417 ~~~v~~lm~~~~eeg~~~R~ra~~l 441 (470)
T PLN03015 417 ASLVRKIVAEEDEEGQKIRAKAEEV 441 (470)
T ss_pred HHHHHHHHccCcccHHHHHHHHHHH
Confidence 9999999952 12234444444443
No 169
>PLN02555 limonoid glucosyltransferase
Probab=97.00 E-value=0.024 Score=53.18 Aligned_cols=142 Identities=17% Similarity=0.101 Sum_probs=82.4
Q ss_pred CCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEEE-eCC-----c----cHHHHHHHHcCCCeEEecccChHHHHHHH
Q 016648 181 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-GDG-----P----YREELEKMFTGMPAVFTGMLLGEELSQAY 248 (385)
Q Consensus 181 ~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i~-G~g-----~----~~~~l~~~~~~~~i~~~g~~~~~~~~~~~ 248 (385)
...+.+.+|++.. .+-+..+..+++..+ .+++.+ ... . ..+.+.+.. ..++.+.+++|+.++...
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~-~~flW~~~~~~~~~~~~~~~lp~~~~~~~-~~~g~v~~W~PQ~~iL~H- 353 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSG-VSFLWVMRPPHKDSGVEPHVLPEEFLEKA-GDKGKIVQWCPQEKVLAH- 353 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcC-CeEEEEEecCcccccchhhcCChhhhhhc-CCceEEEecCCHHHHhCC-
Confidence 3456777887632 344666667776654 465544 311 0 111122211 236777899988776322
Q ss_pred HhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCC-CeeEeeC-------CCCHHHHHHHHhHh
Q 016648 249 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDG-KIGYLFN-------PGDLDDCLSKLEPL 316 (385)
Q Consensus 249 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~-~~g~~~~-------~~~~~~l~~~i~~l 316 (385)
..+.++| ..+.-++++||+.+|+|+|+...-+ ....+ .+. +.|+-+. .-+.+++.++++++
T Consensus 354 ~~v~~Fv----tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~---~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~v 426 (480)
T PLN02555 354 PSVACFV----THCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL---VDVFKTGVRLCRGEAENKLITREEVAECLLEA 426 (480)
T ss_pred CccCeEE----ecCCcchHHHHHHcCCCEEeCCCccccHHHHHHH---HHHhCceEEccCCccccCcCcHHHHHHHHHHH
Confidence 3455566 3455678999999999999875432 22222 222 4454441 12688999999999
Q ss_pred hcCHHHHHHHHHHHHHH
Q 016648 317 LYNQELRETMGQAARQE 333 (385)
Q Consensus 317 l~~~~~~~~~~~~a~~~ 333 (385)
+.+++ .++++++|++.
T Consensus 427 m~~~~-g~~~r~ra~~l 442 (480)
T PLN02555 427 TVGEK-AAELKQNALKW 442 (480)
T ss_pred hcCch-HHHHHHHHHHH
Confidence 97643 34555555554
No 170
>PLN02534 UDP-glycosyltransferase
Probab=96.99 E-value=0.047 Score=51.32 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=82.4
Q ss_pred CCCCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEE-EeCC---cc------HHHHHHHHcCCCeEEecccChHHHHH
Q 016648 179 EPDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAF-IGDG---PY------REELEKMFTGMPAVFTGMLLGEELSQ 246 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i-~G~g---~~------~~~l~~~~~~~~i~~~g~~~~~~~~~ 246 (385)
++...+.+.+|+... .+-+..+..+++.... .|+. +..+ .. .+.+.+.....++.+.|++|+.++
T Consensus 281 ~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~-~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~i-- 357 (491)
T PLN02534 281 KPRSVIYACLGSLCRLVPSQLIELGLGLEASKK-PFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLI-- 357 (491)
T ss_pred CCCceEEEEecccccCCHHHHHHHHHHHHhCCC-CEEEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHH--
Confidence 334667777887642 2335555677777654 4333 3321 11 122233334457888899998664
Q ss_pred HHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeC---------------CCCHH
Q 016648 247 AYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFN---------------PGDLD 307 (385)
Q Consensus 247 ~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~---------------~~~~~ 307 (385)
+...++..+- ..+..++++||+++|+|+|+-...+ ....+. +.-+.|+-+. .-+.+
T Consensus 358 -L~h~~v~~fv--tH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~--e~~~vGv~~~~~~~~~~~~~~~~~~~v~~e 432 (491)
T PLN02534 358 -LSHPAIGGFL--THCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIV--EVLRIGVRVGVEVPVRWGDEERVGVLVKKD 432 (491)
T ss_pred -hcCCccceEE--ecCccHHHHHHHHcCCCEEeccccccHHHHHHHHH--HhhcceEEecccccccccccccccCccCHH
Confidence 6677773332 3455779999999999999875432 111110 1111222110 12688
Q ss_pred HHHHHHhHhhcC-HHHHHHHHHHHHHH
Q 016648 308 DCLSKLEPLLYN-QELRETMGQAARQE 333 (385)
Q Consensus 308 ~l~~~i~~ll~~-~~~~~~~~~~a~~~ 333 (385)
++++++++++.+ .++-+++++++.+.
T Consensus 433 ev~~~v~~~m~~~~eeg~~~R~rA~el 459 (491)
T PLN02534 433 EVEKAVKTLMDDGGEEGERRRRRAQEL 459 (491)
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHH
Confidence 999999999962 22234444444443
No 171
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.91 E-value=0.072 Score=47.81 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=63.7
Q ss_pred CCcEEEEEee-cccccc--HHHHHHHHHhC--CCceEEEEeCCccHHHHHHHHcCC--C-eEEecccChHHHHHHHHhCc
Q 016648 181 DKPLIVHVGR-LGVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM--P-AVFTGMLLGEELSQAYASGD 252 (385)
Q Consensus 181 ~~~~i~~~G~-~~~~k~--~~~l~~a~~~~--~~~~l~i~G~g~~~~~l~~~~~~~--~-i~~~g~~~~~~~~~~~~~ad 252 (385)
++.+++..|. ..+.|. .+.+.++++.+ .+.+++++|...+.+..++..... + +.+.|..+-.++..+++.||
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali~~a~ 253 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLIALAK 253 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHHHhCC
Confidence 3455666665 334554 33555555444 468899999776665555543322 2 34678888899999999999
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 253 VFVMPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 253 i~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
++|.... |..= =|.|.|+|+|+--.+
T Consensus 254 l~I~~DS----Gp~H-lAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 254 AVVTNDS----GLMH-VAAALNRPLVALYGS 279 (334)
T ss_pred EEEeeCC----HHHH-HHHHcCCCEEEEECC
Confidence 9996542 3333 388999999975333
No 172
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=96.87 E-value=0.19 Score=43.56 Aligned_cols=97 Identities=20% Similarity=0.185 Sum_probs=59.9
Q ss_pred CCCcEEEEEeecccc----------c-cHHHHHHHHHhCCCceEEEEeCC-----ccHHHHHHHHcCCCeEEecccChHH
Q 016648 180 PDKPLIVHVGRLGVE----------K-SLDFLKRVMDRLPEARIAFIGDG-----PYREELEKMFTGMPAVFTGMLLGEE 243 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~----------k-~~~~l~~a~~~~~~~~l~i~G~g-----~~~~~l~~~~~~~~i~~~g~~~~~~ 243 (385)
.++..+++......+ . -.+.+.++++..|+.++++--.. .....+.+.....++.+... ..+
T Consensus 115 ~~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 192 (269)
T PF05159_consen 115 KNKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDD--DVN 192 (269)
T ss_pred CCCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECC--CCC
Confidence 455666776665433 1 23344445555678887765422 12233344333334444322 257
Q ss_pred HHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 244 LSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 244 ~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
+.+++..||.++.-+ +++-+||+.+|+||++-..+
T Consensus 193 ~~~Ll~~s~~Vvtin-----StvGlEAll~gkpVi~~G~~ 227 (269)
T PF05159_consen 193 LYELLEQSDAVVTIN-----STVGLEALLHGKPVIVFGRA 227 (269)
T ss_pred HHHHHHhCCEEEEEC-----CHHHHHHHHcCCceEEecCc
Confidence 889999999998655 77899999999999986543
No 173
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=96.83 E-value=0.0038 Score=49.23 Aligned_cols=96 Identities=17% Similarity=0.183 Sum_probs=58.7
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCc------ccccc----cccccchhHHHHHHHHHHhCCeEEEc
Q 016648 62 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPV------YIPRY----TFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
+.||||+.|...... ..+..-..++|++...--++.. +.+.. ......+..+...-..+..||..+++
T Consensus 65 f~PDvI~~H~GWGe~--Lflkdv~P~a~li~Y~E~~y~~~g~d~~FDpe~p~~~~~~~~~r~rN~~~l~~l~~~D~~isP 142 (171)
T PF12000_consen 65 FVPDVIIAHPGWGET--LFLKDVFPDAPLIGYFEFYYRASGADVGFDPEFPPSLDDRARLRMRNAHNLLALEQADAGISP 142 (171)
T ss_pred CCCCEEEEcCCcchh--hhHHHhCCCCcEEEEEEEEecCCCCcCCCCCCCCCCHHHHHHHHHHhHHHHHHHHhCCcCcCC
Confidence 578999999753222 2233334588887643221111 11111 11111111223345567889999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCC
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESF 162 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~ 162 (385)
|.+.+..+...+ .++|.||..|||++.+
T Consensus 143 T~wQ~~~fP~~~---r~kI~VihdGiDt~~~ 170 (171)
T PF12000_consen 143 TRWQRSQFPAEF---RSKISVIHDGIDTDRF 170 (171)
T ss_pred CHHHHHhCCHHH---HcCcEEeecccchhhc
Confidence 999999987775 3699999999998754
No 174
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.77 E-value=0.4 Score=43.34 Aligned_cols=97 Identities=15% Similarity=0.147 Sum_probs=62.6
Q ss_pred CCcEEEEEeec-ccccc--HHHHHHHHHhC--CCceEEEEeCCccHHHHHHHHcCC------C-eEEecccChHHHHHHH
Q 016648 181 DKPLIVHVGRL-GVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM------P-AVFTGMLLGEELSQAY 248 (385)
Q Consensus 181 ~~~~i~~~G~~-~~~k~--~~~l~~a~~~~--~~~~l~i~G~g~~~~~l~~~~~~~------~-i~~~g~~~~~~~~~~~ 248 (385)
+..+++..|.- .+.|. .+.+.++++.+ .+.+++++|...+.+..++..... + +.+.|..+-.++..++
T Consensus 180 ~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~ali 259 (348)
T PRK10916 180 RPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVILI 259 (348)
T ss_pred CCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHHH
Confidence 34556666653 34454 33444544443 468899999766665555443321 1 4567877779999999
Q ss_pred HhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecC
Q 016648 249 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 249 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~ 282 (385)
+.||++|..-. |..= =|.|.|+|+|+--.
T Consensus 260 ~~a~l~I~nDT----Gp~H-lAaA~g~P~valfG 288 (348)
T PRK10916 260 AACKAIVTNDS----GLMH-VAAALNRPLVALYG 288 (348)
T ss_pred HhCCEEEecCC----hHHH-HHHHhCCCEEEEEC
Confidence 99999996542 3333 38999999997533
No 175
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=96.68 E-value=0.0073 Score=56.07 Aligned_cols=149 Identities=13% Similarity=0.116 Sum_probs=96.2
Q ss_pred cEEEEEee-ccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC-C
Q 016648 183 PLIVHVGR-LGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-S 260 (385)
Q Consensus 183 ~~i~~~G~-~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~-~ 260 (385)
..-+..|. -..++|-+..++++.+.-+++-.+.+.......+- .-|.-+|.++.+|+..+++.+.++|-... .
T Consensus 278 ~~AlVyGK~~~~w~~k~~~l~~l~~~~eih~tV~~~~~~~~~~P-----~~V~NHG~l~~~ef~~lL~~akvfiGlGfP~ 352 (559)
T PF15024_consen 278 NQALVYGKERYMWKGKEKYLDVLHKYMEIHGTVYDEPQRPPNVP-----SFVKNHGILSGDEFQQLLRKAKVFIGLGFPY 352 (559)
T ss_pred ceeEEEccchhhhcCcHHHHHHHHhhcEEEEEeccCCCCCcccc-----hhhhhcCcCCHHHHHHHHHhhhEeeecCCCC
Confidence 34444453 34467888888888776444444433222111111 13778999999999999999999994332 2
Q ss_pred CCCcHHHHHHHhcCCcEEEecCCCC---------------Cccccc------CCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 261 ETLGLVVLEAMSSGIPVVGVRAGGI---------------PDIIPE------DQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s~~~~~---------------~e~~~~------~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
| |-+.+||++.|+|.|-...... +++-.. .-..-.-+.++.+|.+++.++|.+++.+
T Consensus 353 E--gPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQhPY~e~~iG~PhVytVd~~n~~~v~~Avk~il~~ 430 (559)
T PF15024_consen 353 E--GPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQHPYAEEFIGEPHVYTVDINNSTEVEAAVKAILAT 430 (559)
T ss_pred C--CCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccCChHHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhc
Confidence 2 5678999999999986543211 111100 0112245778888999999999999876
Q ss_pred HHHHHHHHHHHHHHH-HhCCHHHHHHHHH
Q 016648 320 QELRETMGQAARQEM-EKYDWRAATRTIR 347 (385)
Q Consensus 320 ~~~~~~~~~~a~~~~-~~~s~~~~~~~~~ 347 (385)
+- .-++ -+|+.+.+.+++.
T Consensus 431 ~v---------~Py~P~efT~egmLeRv~ 450 (559)
T PF15024_consen 431 PV---------EPYLPYEFTCEGMLERVN 450 (559)
T ss_pred CC---------CCcCCcccCHHHHHHHHH
Confidence 42 2344 4689999998884
No 176
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=96.49 E-value=0.16 Score=44.69 Aligned_cols=250 Identities=14% Similarity=0.112 Sum_probs=143.2
Q ss_pred CCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHH----------HHhCCeEEEcC
Q 016648 63 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFL----------HRAADLTLVPS 132 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ad~ii~~s 132 (385)
+.||++=-+.....- -....+..|.++|....+...... .+..+ -...|.|++.-
T Consensus 73 ~lDVlIEmg~ql~~~-~~~~~~~~G~KvV~y~~GndYv~~--------------~E~~lF~k~~~~~f~~~~yD~VW~lP 137 (364)
T PF10933_consen 73 ELDVLIEMGAQLDPE-WLDYMRARGGKVVSYRCGNDYVMD--------------IESMLFNKPSGHLFNGAPYDEVWTLP 137 (364)
T ss_pred cCCEEEEccCccCHH-HHHHHHHcCCeEEEEeCCchHHHH--------------hhHHhcCCCCCccCCCCCCceeEecc
Confidence 669998876533222 223446789999987777421111 11111 24578888765
Q ss_pred hhHH---HHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhh-HhhhcCCC--CCCcEEEEEeecccccc---HHHHHH-
Q 016648 133 VAIG---KDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEM-RWRLSNGE--PDKPLIVHVGRLGVEKS---LDFLKR- 202 (385)
Q Consensus 133 ~~~~---~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~-~~~~~~~~--~~~~~i~~~G~~~~~k~---~~~l~~- 202 (385)
+... .++... ...++.++|.--++.+++......+. ..+....+ +...+-+|=-++.-.|. ..++.+
T Consensus 138 q~~~~~~~yl~~l---~r~Pv~~vP~iWsP~F~~~~~~~l~~~~~~FGY~p~~~~~RvavfEPNi~vvK~~~~PmLi~E~ 214 (364)
T PF10933_consen 138 QFENTCAPYLETL---HRCPVRVVPHIWSPRFLDQRIAQLPEHGLRFGYQPGRPGKRVAVFEPNISVVKTCFIPMLICEE 214 (364)
T ss_pred chhhhchHHHHHH---hcCCceeeCccCCchhHHHHHHhhhhcCCccccccCCCCceEEEecCCceEEeecCccHHHHHH
Confidence 5333 233333 34577888875554443221111000 00111111 12222333334444555 233344
Q ss_pred HHHhCCC-ceEEEEeCC---ccHHHHHHHHc------CCCeEEecccChHHHHHHHHh-CcEEEEcCCCCCCcHHHHHHH
Q 016648 203 VMDRLPE-ARIAFIGDG---PYREELEKMFT------GMPAVFTGMLLGEELSQAYAS-GDVFVMPSESETLGLVVLEAM 271 (385)
Q Consensus 203 a~~~~~~-~~l~i~G~g---~~~~~l~~~~~------~~~i~~~g~~~~~~~~~~~~~-adi~v~ps~~e~~~~~~~Ea~ 271 (385)
+.+.-|+ +..+.+.+. .+.+.+...+. .....|.|.. +++.+|++ .|++|.--...+..-.-+|++
T Consensus 215 aYR~~P~~v~~~~V~Nt~~~ke~~~F~~f~~~ldlvr~gkasfegR~---~~p~fla~~tD~VvSHqWeN~lNYlY~daL 291 (364)
T PF10933_consen 215 AYRADPDAVEHVYVTNTYHLKEHPTFVNFANSLDLVRDGKASFEGRF---DFPDFLAQHTDAVVSHQWENPLNYLYYDAL 291 (364)
T ss_pred HHHhChhhcceEEEecchhhhcCHHHHHHHHhhHHhhcCeeEEeeec---ChHHHHHhCCCEEEeccccchhhHHHHHHH
Confidence 4444454 344444422 12233333333 2246777775 55666655 689887666667788899999
Q ss_pred hcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc-CHHHHHHHHHHHHHHHHhCCHHHHH
Q 016648 272 SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAAT 343 (385)
Q Consensus 272 a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~a~~~~~~~s~~~~~ 343 (385)
.-|=|.|- ...++ ++.|+.++..|..+=++++.+++. .+...+...+++++.+..++..+-+
T Consensus 292 yggYPLVH-----NS~~l-----~d~GYYY~~fD~~~G~r~L~~A~~~HD~~~~~Y~~ra~~~l~~~~p~n~~ 354 (364)
T PF10933_consen 292 YGGYPLVH-----NSPLL-----KDVGYYYPDFDAFEGARQLLRAIREHDADLDAYRARARRLLDRLSPENPA 354 (364)
T ss_pred hcCCCccc-----Ccchh-----cccCcCCCCccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhhCCCCHH
Confidence 99999996 35566 448999999999999999999887 4456788889999998776655443
No 177
>PF11997 DUF3492: Domain of unknown function (DUF3492); InterPro: IPR022622 This domain is functionally uncharacterised and is found in bacteria, archaea and eukaryotes. It is typically between 259 to 282 amino acids in length. This region is found N-terminal PF00534 from PFAM. There are two conserved sequence motifs: GGVS and EHGIY.
Probab=96.41 E-value=0.012 Score=50.49 Aligned_cols=81 Identities=15% Similarity=0.023 Sum_probs=59.4
Q ss_pred CCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCccc------------ccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 63 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYI------------PRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
+.||+|+.+.+..++.+.+.+.+.|+|+++|-|+.+.... .......+.+.+..+-+..+..||.|++
T Consensus 172 ~advyHsvstGyAgl~g~~~k~~~g~P~lLTEHGIY~RER~~ei~~a~w~~~~~~~r~~wi~~f~~l~~~~Y~~Ad~I~~ 251 (268)
T PF11997_consen 172 KADVYHSVSTGYAGLLGALAKYRYGRPFLLTEHGIYTREREIEILQADWIWESPYVRDLWIRFFESLSRLAYRAADRITP 251 (268)
T ss_pred CCCEEecCCccHHHHHHHHHHHHhCCCEEEecCCccHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhCeecc
Confidence 6699999998888888999999999999999999654311 1112233344455667888999999999
Q ss_pred cChhHHHHHHHhc
Q 016648 131 PSVAIGKDLEAAR 143 (385)
Q Consensus 131 ~s~~~~~~~~~~~ 143 (385)
.++...+.-.+.|
T Consensus 252 l~~~n~~~q~~~G 264 (268)
T PF11997_consen 252 LYEYNREWQIELG 264 (268)
T ss_pred cchhhHHHHHHhC
Confidence 9997555444433
No 178
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=96.35 E-value=0.52 Score=40.63 Aligned_cols=181 Identities=14% Similarity=0.170 Sum_probs=94.2
Q ss_pred HHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCC
Q 016648 77 FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKG 156 (385)
Q Consensus 77 ~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~ 156 (385)
+.....++..++|+++.-.+..| ......+...+.++++++.+.+=.+...+.+.+.+. +. ++.+.|..
T Consensus 89 ~~~~~~~~~~~~pv~~~g~g~gp---------~~~~~~~~~~~~~l~~~~~i~vRD~~S~~~l~~~g~-~~-~~~~~~D~ 157 (286)
T PF04230_consen 89 LRWLFLAKKLGKPVIILGQGIGP---------FRSEEFKKLLRRILSKADYISVRDEYSYELLKKLGI-SG-NVKLVPDP 157 (286)
T ss_pred HHHHHHHHhcCCCeEEECceECc---------cCCHHHHHHHHHHHhCCCEEEECCHHHHHHHHHcCC-CC-CcEEEeCc
Confidence 33445667789999886555422 112223346777888999988877777775666543 33 77777755
Q ss_pred CCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeec---cccccHHHHHHHHHhC--CC--ceEEEEeCC--ccH-HHHHH
Q 016648 157 VDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL---GVEKSLDFLKRVMDRL--PE--ARIAFIGDG--PYR-EELEK 226 (385)
Q Consensus 157 v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~---~~~k~~~~l~~a~~~~--~~--~~l~i~G~g--~~~-~~l~~ 226 (385)
+- ...+...... ..........+... ....-.+.+.+.+..+ .. ..+...... ... .....
T Consensus 158 af--~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (286)
T PF04230_consen 158 AF--LLPPSYPDED-------KSKPKRNYISVSNSPSRNNEEYIEEIAELIQRLLDKGYKIVLLPFSPSDDDEDDDDFNE 228 (286)
T ss_pred hh--hcCccccccc-------ccccccceeeeccccchhhhhHHHHHHHHHHHhhcccceeEEEEeeeccchhhHHHHHh
Confidence 42 1111111000 00001112222221 1222234444444443 22 222223321 111 11111
Q ss_pred H---H-cCC-CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecC
Q 016648 227 M---F-TGM-PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 227 ~---~-~~~-~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~ 282 (385)
. . ... ........+.+++..++++||++|.... -. .+=|+++|+|+|+-+.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Is~Rl----H~-~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 229 IDIKAEKFFNVIIIDYSLSPDELLELISQADLVISMRL----HG-AILALSLGVPVIAISY 284 (286)
T ss_pred hhhhcccccceeEecCCCCHHHHHHHHhcCCEEEecCC----HH-HHHHHHcCCCEEEEec
Confidence 1 1 111 2455666777999999999999995543 33 4459999999998653
No 179
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=96.33 E-value=0.0077 Score=40.85 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=49.1
Q ss_pred ccccccCCCCccc-----ccccccchHHHHHHhhccCCCEEEeCCC-chhHHHHHHHHHHhCCCEEEEEecCC
Q 016648 32 HHIYSFPCPWYQK-----VPLSLALSPRIISEVARFKPDIIHASSP-GIMVFGALIIAKLLCVPIVMSYHTHV 98 (385)
Q Consensus 32 ~~~~~~~~~~~~~-----~~~~~~~~~~l~~~i~~~~pDiI~~~~~-~~~~~~~~~~~~~~~~p~v~~~h~~~ 98 (385)
.|.+.+.+|...- +|--+....-++.++.+++.||||.|.. ..+...+++.++..|.+.|+|-|..+
T Consensus 14 ngLKVYYlP~~~~~~~~t~Pt~~~~~pl~R~IlirE~I~IVHgH~a~S~l~hE~i~hA~~mGlktVfTDHSLf 86 (90)
T PF08288_consen 14 NGLKVYYLPLKVFYNQCTLPTLFGSFPLLRNILIRERIDIVHGHQAFSTLCHEAILHARTMGLKTVFTDHSLF 86 (90)
T ss_pred CCeEEEeecchhhhcCcchHHHHHhhHHHHHHHHHcCeeEEEeehhhhHHHHHHHHHHHhCCCcEEeeccccc
Confidence 4555555554432 2333445667888889999999999986 55667788888999999999988854
No 180
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=96.18 E-value=0.038 Score=44.73 Aligned_cols=97 Identities=13% Similarity=0.117 Sum_probs=51.6
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
....+.+.++..+||++++.....+.- .+..++..|+|+++.---..+..... .+.+..+.+.+++..|.|.+
T Consensus 83 ~~~~~~rfl~~~~P~~~i~~EtElWPn-ll~~a~~~~ip~~LvNarls~~s~~~------~~~~~~~~r~~l~~f~~i~a 155 (186)
T PF04413_consen 83 FPWAVRRFLDHWRPDLLIWVETELWPN-LLREAKRRGIPVVLVNARLSERSFRR------YRRFPFLFRPLLSRFDRILA 155 (186)
T ss_dssp SHHHHHHHHHHH--SEEEEES----HH-HHHH-----S-EEEEEE--------------------HHHHHHGGG-SEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEEccccCHH-HHHHHhhcCCCEEEEeeeeccccchh------hhhhHHHHHHHHHhCCEEEE
Confidence 356788999999999999987543332 23456778999987433322211111 11223477889999999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeC
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKK 155 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~ 155 (385)
.|+...+.+.+.+. +++++.+..|
T Consensus 156 qs~~da~r~~~lG~-~~~~v~v~Gn 179 (186)
T PF04413_consen 156 QSEADAERFRKLGA-PPERVHVTGN 179 (186)
T ss_dssp SSHHHHHHHHTTT--S--SEEE---
T ss_pred CCHHHHHHHHHcCC-CcceEEEeCc
Confidence 99999999999876 6678988876
No 181
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=96.16 E-value=0.08 Score=51.42 Aligned_cols=122 Identities=20% Similarity=0.233 Sum_probs=87.8
Q ss_pred CCCcEEEEEeeccccccHHHHHHHH----HhC-----CCceEEEEeCCc----cHHHHHHHH----c----CCCeEEecc
Q 016648 180 PDKPLIVHVGRLGVEKSLDFLKRVM----DRL-----PEARIAFIGDGP----YREELEKMF----T----GMPAVFTGM 238 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~~~~l~~a~----~~~-----~~~~l~i~G~g~----~~~~l~~~~----~----~~~i~~~g~ 238 (385)
++...++++-|+...|...+.+.-+ ..+ |.+.+++.|... ..+.+.+++ . ..+|.|+..
T Consensus 485 p~~lfd~~~kRiheYKRq~Lnl~~i~~ly~~i~~d~~prv~~iFaGKAhP~y~~aK~iIk~I~~~a~~in~~lkVvFl~n 564 (750)
T COG0058 485 PNALFDGQARRIHEYKRQLLNLLDIERLYRILKEDWVPRVQIIFAGKAHPADYAAKEIIKLINDVADVINNKLKVVFLPN 564 (750)
T ss_pred CCcceeeeehhhhhhhhhHHhHhhHHHHHHHHhcCCCCceEEEEeccCCCcchHHHHHHHHHHHHHHhhcccceEEEeCC
Confidence 4577899999999999866543222 222 335556667321 112222222 1 246888888
Q ss_pred cChHHHHHHHHhCcEEEEcCC--CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCC--CCCeeEeeCCC
Q 016648 239 LLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ--DGKIGYLFNPG 304 (385)
Q Consensus 239 ~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~--~~~~g~~~~~~ 304 (385)
.+-.-...++..||+-...|. .|+.|++=+-++.-|.+-|+|-.|...|.. + .+.||+++...
T Consensus 565 YdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGanvEi~---e~vg~~N~~~fG~~ 631 (750)
T COG0058 565 YDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGANVEIY---EHVGGENGWIFGET 631 (750)
T ss_pred CChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccHHHHHH---HhcCCCceEEeCCc
Confidence 876777788999999888765 689999999999999999999999999888 5 78899998753
No 182
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.03 E-value=0.64 Score=41.91 Aligned_cols=96 Identities=13% Similarity=0.110 Sum_probs=60.2
Q ss_pred CCcEEEEEeecccccc--HHHHHHHHHhC--CCceEEEEeCCc--cHHHHHHHHc---CCC-eEEecccChHHHHHHHHh
Q 016648 181 DKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFT---GMP-AVFTGMLLGEELSQAYAS 250 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~--~~~l~~a~~~~--~~~~l~i~G~g~--~~~~l~~~~~---~~~-i~~~g~~~~~~~~~~~~~ 250 (385)
+..+++..|.-.+.|. .+.+.++++.+ .+.+++++|.+. +.+..++... ..+ +.+.|..+-.|+..+++.
T Consensus 181 ~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 260 (344)
T TIGR02201 181 QNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALIDH 260 (344)
T ss_pred CCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHHHh
Confidence 3455666665544444 34444444443 468899998643 2222333322 222 447888888999999999
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
||++|.... |. +-=|.|+|+|+|+--
T Consensus 261 a~l~Vs~DS----Gp-~HlAaA~g~p~v~Lf 286 (344)
T TIGR02201 261 ARLFIGVDS----VP-MHMAAALGTPLVALF 286 (344)
T ss_pred CCEEEecCC----HH-HHHHHHcCCCEEEEE
Confidence 999996642 33 333899999999753
No 183
>COG1887 TagB Putative glycosyl/glycerophosphate transferases involved in teichoic acid biosynthesis TagF/TagB/EpsJ/RodC [Cell envelope biogenesis, outer membrane]
Probab=96.00 E-value=0.58 Score=42.70 Aligned_cols=222 Identities=9% Similarity=0.094 Sum_probs=118.9
Q ss_pred HHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhH--hhhcCCCCCCcEEEEEeeccccc---
Q 016648 121 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMR--WRLSNGEPDKPLIVHVGRLGVEK--- 195 (385)
Q Consensus 121 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~G~~~~~k--- 195 (385)
...+.|.+.+.+......+.+.++....++.....+-....+.......... ......+.++.+|+|.-++....
T Consensus 145 ~~~~~dy~~~~~~~~~~if~~~f~~~~~~i~~~G~Pr~D~~~~~~~~~~~~~~~~~~~~~~~~k~vIlyaPTfr~~~~~~ 224 (388)
T COG1887 145 VRNHWDYLISPNPESTAIFAEAFNIDKENILETGYPRNDKLFDEAGKTEDILLIQLALPLPQDKKVILYAPTFRDNDVLI 224 (388)
T ss_pred eeeeeeeeeeCChhhHHHHHHHhcccccceeecCcccchhhhhhccchhhhHHHhhhcCCcccCceEEecCCccCCcccc
Confidence 4566788888888888887777776666666555444332332222222111 11122345688999988876654
Q ss_pred c---H--HHHHHHHHh-CC-CceEEEEeCCcc-HHHHHHHHcCCCeEEecccC-hHHHHHHHHhCcEEEEcCCCCCCcHH
Q 016648 196 S---L--DFLKRVMDR-LP-EARIAFIGDGPY-REELEKMFTGMPAVFTGMLL-GEELSQAYASGDVFVMPSESETLGLV 266 (385)
Q Consensus 196 ~---~--~~l~~a~~~-~~-~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~-~~~~~~~~~~adi~v~ps~~e~~~~~ 266 (385)
+ . ..-+..+.+ +. +--.+|+-..+. ............ +.-.++ ..++.++|..+|++|.- ++.+
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~~~~ii~k~Hp~is~~~~~~~~~~~--~~~~vs~~~di~dll~~sDiLITD-----ySSv 297 (388)
T COG1887 225 GTQFFNLDIDIEKLKEKLGENEYVIIVKPHPLISDKIDKRYALDD--FVLDVSDNADINDLLLVSDILITD-----YSSV 297 (388)
T ss_pred chhhhhhhhhHHHHHHhhccCCeEEEEecChhhhhhhhhhhhccc--eeEecccchhHHHHHhhhCEEEee-----chHH
Confidence 2 2 222233332 22 333333332222 122221111112 222222 38999999999999943 4789
Q ss_pred HHHHHhcCCcEEEe--cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHH
Q 016648 267 VLEAMSSGIPVVGV--RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRA 341 (385)
Q Consensus 267 ~~Ea~a~G~PvI~s--~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~ 341 (385)
..|+|...+|||-- |.... ..+..+......|-++. +.+++.++|.....+.+...+..+...+....+.-.+
T Consensus 298 ~fdf~~l~KPiify~~D~~~y~~~rg~~~d~~~~~Pg~~~~--~~~~li~ai~~~~~~~~~~~~k~~~~~~~~~~~~dg~ 375 (388)
T COG1887 298 IFDFMLLDKPIIFYTYDLEQYDELRGFYLDYKFEAPGEVVE--TQEELIDAIKPYDEDGNYDLEKLRVFNDKFNSYEDGR 375 (388)
T ss_pred HHHHHHhcCcEEEEecChHHHHhhhhhhhhHHhcCCccccc--cHHHHHHHHHhhhcccchhHHHHHHHHHhhccccccc
Confidence 99999999999954 32211 11110002233455555 8899999999988755443333333333333343355
Q ss_pred HHHHHHHHHH
Q 016648 342 ATRTIRNEQY 351 (385)
Q Consensus 342 ~~~~~~~~iy 351 (385)
..+++.+.++
T Consensus 376 ss~ri~~~i~ 385 (388)
T COG1887 376 SSERILKLIF 385 (388)
T ss_pred HHHHHHHHHh
Confidence 5555554333
No 184
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.81 E-value=0.38 Score=42.85 Aligned_cols=97 Identities=16% Similarity=0.139 Sum_probs=61.7
Q ss_pred CCCcEEEEEeeccccccH--HHHHHHHHhC--CCceEEEEeCCc-cHHHHHHHHcCC-CeEEecccChHHHHHHHHhCcE
Q 016648 180 PDKPLIVHVGRLGVEKSL--DFLKRVMDRL--PEARIAFIGDGP-YREELEKMFTGM-PAVFTGMLLGEELSQAYASGDV 253 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~~--~~l~~a~~~~--~~~~l~i~G~g~-~~~~l~~~~~~~-~i~~~g~~~~~~~~~~~~~adi 253 (385)
+++.+++..|.-...|.+ +.+.++++.+ .+.+++++|+++ +.+..++..... +..+.|..+-.++..+++.||+
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ali~~a~l 257 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVAALLAGADA 257 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHHHHHHcCCE
Confidence 345566777765555553 4555555544 367888875444 333344433322 3456788888999999999999
Q ss_pred EEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 254 FVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 254 ~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
+|.... |..= =|.++|+|+|+--
T Consensus 258 ~I~~DS----gp~H-lAaa~g~P~i~lf 280 (319)
T TIGR02193 258 VVGVDT----GLTH-LAAALDKPTVTLY 280 (319)
T ss_pred EEeCCC----hHHH-HHHHcCCCEEEEE
Confidence 996542 3333 3778999999753
No 185
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=95.80 E-value=0.094 Score=46.26 Aligned_cols=70 Identities=17% Similarity=0.233 Sum_probs=52.1
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcC-CcEEEecCC--CCCcccccCCCCCeeEeeCCCCHHHHHHHHh
Q 016648 242 EELSQAYASGDVFVMPSESETLGLVVLEAMSSG-IPVVGVRAG--GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLE 314 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G-~PvI~s~~~--~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~ 314 (385)
.+..+.|++|.+++.|.....+...++|||++| +|||.++.- ...+.+ .-....+.++..+..++.+.++
T Consensus 228 ~~~~~~l~~S~FCL~p~G~~~~s~Rl~eal~~GcIPVii~d~~~lPf~~~l---dw~~fsv~v~~~~~~~l~~iL~ 300 (302)
T PF03016_consen 228 SEYMELLRNSKFCLCPRGDGPWSRRLYEALAAGCIPVIISDDYVLPFEDVL---DWSRFSVRVPEADLPELPEILR 300 (302)
T ss_pred hHHHHhcccCeEEEECCCCCcccchHHHHhhhceeeEEecCcccCCccccc---CHHHEEEEECHHHHHHHHHHHh
Confidence 568899999999999887777889999999999 588876532 445566 4566677777666655555544
No 186
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=95.76 E-value=0.24 Score=47.22 Aligned_cols=144 Identities=15% Similarity=0.136 Sum_probs=82.6
Q ss_pred CcEEEEEeecc-----ccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHc---CCCeEEecccChHHHHHHHHhCcE
Q 016648 182 KPLIVHVGRLG-----VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT---GMPAVFTGMLLGEELSQAYASGDV 253 (385)
Q Consensus 182 ~~~i~~~G~~~-----~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~---~~~i~~~g~~~~~~~~~~~~~adi 253 (385)
..+++.+|+.. +.+-...+..+++..+++.++..=.+.....+.+... ..+|...+++|+.++. +....+
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~PQ~~ll--l~H~~v 355 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAPQNDLL--LDHPAV 355 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCCcHHHh--cCCCcC
Confidence 56666778774 2345677888888887777666554332222222221 3368888999998876 333223
Q ss_pred EEEcCCCCCCcHHHHHHHhcCCcEEEec----CCCCCcccccCCCCCeeEeeCC-CCHHHHHHHHhHhhcCHHHHHHHHH
Q 016648 254 FVMPSESETLGLVVLEAMSSGIPVVGVR----AGGIPDIIPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQ 328 (385)
Q Consensus 254 ~v~ps~~e~~~~~~~Ea~a~G~PvI~s~----~~~~~e~~~~~~~~~~g~~~~~-~~~~~l~~~i~~ll~~~~~~~~~~~ 328 (385)
..+-+ .-|++ +++|++.+|+|+|+.+ ..-....+. +.+..+..... .+...+.+++..++++++..+...+
T Consensus 356 ~~FvT-HgG~n-St~E~~~~GvP~v~~Plf~DQ~~Na~~i~--~~g~~~v~~~~~~~~~~~~~~~~~il~~~~y~~~~~~ 431 (496)
T KOG1192|consen 356 GGFVT-HGGWN-STLESIYSGVPMVCVPLFGDQPLNARLLV--RHGGGGVLDKRDLVSEELLEAIKEILENEEYKEAAKR 431 (496)
T ss_pred cEEEE-CCccc-HHHHHHhcCCceecCCccccchhHHHHHH--hCCCEEEEehhhcCcHHHHHHHHHHHcChHHHHHHHH
Confidence 22222 23344 4599999999999543 222333331 34455544432 1233378888888888765444433
Q ss_pred HHH
Q 016648 329 AAR 331 (385)
Q Consensus 329 ~a~ 331 (385)
-+.
T Consensus 432 l~~ 434 (496)
T KOG1192|consen 432 LSE 434 (496)
T ss_pred HHH
Confidence 333
No 187
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.66 E-value=0.53 Score=41.98 Aligned_cols=97 Identities=14% Similarity=0.132 Sum_probs=60.1
Q ss_pred CcEEEEEeecccccc--HHHHHHHHHhC--CCceEEEE-eCCccHHHHHHHHcCC-CeEEecccChHHHHHHHHhCcEEE
Q 016648 182 KPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFI-GDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYASGDVFV 255 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~--~~~l~~a~~~~--~~~~l~i~-G~g~~~~~l~~~~~~~-~i~~~g~~~~~~~~~~~~~adi~v 255 (385)
+.+++..|.-...|. .+.+.++++.+ .+.++++. |...+.+..++..... ++.+.|..+-.|+..+++.||++|
T Consensus 179 ~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali~~a~l~I 258 (322)
T PRK10964 179 PYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVLAGAKAVV 258 (322)
T ss_pred CeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHHHhCCEEE
Confidence 344444554333343 33445555444 36778776 5444444444444332 466778888899999999999999
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
.... |..= =|.|+|+|+|+--.+
T Consensus 259 ~nDS----Gp~H-lA~A~g~p~valfGp 281 (322)
T PRK10964 259 SVDT----GLSH-LTAALDRPNITLYGP 281 (322)
T ss_pred ecCC----cHHH-HHHHhCCCEEEEECC
Confidence 6542 3333 389999999975433
No 188
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=95.59 E-value=0.14 Score=49.64 Aligned_cols=186 Identities=17% Similarity=0.176 Sum_probs=103.5
Q ss_pred HHhCCeEEEcChhHHHHHHHh-----cccCCCcEEEeeCCCCCCCCCCCCC-----------------------------
Q 016648 122 HRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESFHPRFR----------------------------- 167 (385)
Q Consensus 122 ~~~ad~ii~~s~~~~~~~~~~-----~~~~~~~i~vi~~~v~~~~~~~~~~----------------------------- 167 (385)
+..+..+=.+|.-..+.+++. +...+.++.-+.|||....+-....
T Consensus 329 l~~S~~vNGVS~LH~ev~k~~~f~~f~~l~P~kf~nvTNGVh~rrWl~~~nP~L~~L~~~~iG~~W~~d~~~l~~l~~~~ 408 (713)
T PF00343_consen 329 LRGSHSVNGVSKLHGEVLKQMVFKDFYELWPEKFGNVTNGVHPRRWLSQANPELSELITEYIGDDWRTDLEQLEKLEKFA 408 (713)
T ss_dssp HHCESEEEESSHHHHHHHHHTTTHHHHHHSGGGEEE----B-TCCCCCCTSHHHHHHHHHHHTSGGGCSGGGGGGGGGGC
T ss_pred HHhcccccchHHHHHHHHHHHHhhhhhhcCCceeeccccCccCcccccccCHHHHHHHHHHhccccccCHHHHHHHHHhh
Confidence 444566777887777766543 2334568999999998876531100
Q ss_pred -ChhhH-------------------hhhc-CCCCCCcEEEEEeeccccccHHH-HHHHH---Hh---CC-----CceEEE
Q 016648 168 -SSEMR-------------------WRLS-NGEPDKPLIVHVGRLGVEKSLDF-LKRVM---DR---LP-----EARIAF 214 (385)
Q Consensus 168 -~~~~~-------------------~~~~-~~~~~~~~i~~~G~~~~~k~~~~-l~~a~---~~---~~-----~~~l~i 214 (385)
..... .+.. ...++....+++-|+...|...+ ++..+ .+ .| ...+++
T Consensus 409 dd~~~~~~~~~vK~~~K~rl~~~i~~~~~~~ldp~slfdv~~rR~heYKRq~LniL~ii~~y~rik~~p~~~~~Pv~~IF 488 (713)
T PF00343_consen 409 DDEEFQEELREVKQENKERLAEYIKKRTGVELDPDSLFDVQARRFHEYKRQLLNILHIIDRYNRIKNNPNKKIRPVQFIF 488 (713)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHSS---TTSEEEEEES-SCCCCTHHHHHHHHHHHHHHHHHSTTSCCS-EEEEE
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcchhhhhhhhhcccccccCcccccHHHHHHHHHhcccCCCCCeEEEE
Confidence 00000 0001 12346677889999999998776 33322 22 22 366888
Q ss_pred EeCC-c-c--HHHHHHHH-------cC-------CCeEEecccChHHHHHHHHhCcEEEEcCC--CCCCcHHHHHHHhcC
Q 016648 215 IGDG-P-Y--REELEKMF-------TG-------MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSG 274 (385)
Q Consensus 215 ~G~g-~-~--~~~l~~~~-------~~-------~~i~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G 274 (385)
.|.. | + .+.+-+++ .. .+|.|+....-.-...++..||+-+..++ .|+.|++-+-++.-|
T Consensus 489 aGKAhP~d~~gK~iIk~I~~va~~in~Dp~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NG 568 (713)
T PF00343_consen 489 AGKAHPGDYMGKEIIKLINNVAEVINNDPEVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNG 568 (713)
T ss_dssp E----TT-HHHHHHHHHHHHHHHHHCT-TTTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT
T ss_pred eccCCCCcHHHHHHHHHHHHHHHHHhcChhhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCC
Confidence 8842 1 1 11222221 11 14888888877777889999999998766 699999999999999
Q ss_pred CcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHH
Q 016648 275 IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 309 (385)
Q Consensus 275 ~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l 309 (385)
.+.+++-.|...|+.+.. ..++.+++.. +.+++
T Consensus 569 aL~lstlDG~niEi~e~v-G~eN~fiFG~-~~~ev 601 (713)
T PF00343_consen 569 ALNLSTLDGWNIEIAEAV-GEENIFIFGL-TAEEV 601 (713)
T ss_dssp -EEEEESSTCHHHHHHHH--GGGSEEES--BHHHH
T ss_pred CeEEecccchhHHHHHhc-CCCcEEEcCC-CHHHH
Confidence 999999999988887321 2356777753 44444
No 189
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.46 E-value=0.13 Score=50.65 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=90.8
Q ss_pred CCCCcEEEEEeeccccccHHH-HHHHHHhC------C-----CceEEEEeCCc-c---HHHHHHHH----c---C-----
Q 016648 179 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDGP-Y---REELEKMF----T---G----- 230 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~~k~~~~-l~~a~~~~------~-----~~~l~i~G~g~-~---~~~l~~~~----~---~----- 230 (385)
.++....+++-|+...|...+ ++..+..+ | ...+++.|... . .+.+-+++ . .
T Consensus 527 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 606 (797)
T cd04300 527 DPDSLFDVQVKRIHEYKRQLLNVLHIIHLYNRIKENPNADIVPRTFIFGGKAAPGYYMAKLIIKLINAVADVVNNDPDVG 606 (797)
T ss_pred CCCccEEEEeeechhhhhhhhHHHhhHHHHHHHHhCCCcCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhcC
Confidence 456788899999999999887 65554332 3 25677777321 1 11121111 1 1
Q ss_pred --CCeEEecccChHHHHHHHHhCcEEEEcCC--CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCC--CCeeEeeCCC
Q 016648 231 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNPG 304 (385)
Q Consensus 231 --~~i~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~--~~~g~~~~~~ 304 (385)
.+|.|+....-.-...++..||+-...|. .|+.|++=+-+|.-|.+.++|-.|...|+. ++ ++|++++..
T Consensus 607 ~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGanvEi~---e~vG~eN~fiFG~- 682 (797)
T cd04300 607 DKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIA---EEVGEENIFIFGL- 682 (797)
T ss_pred CceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccchhHHHH---HHhCcCcEEEeCC-
Confidence 15888888776777889999999988766 689999999999999999999999998888 44 678888864
Q ss_pred CHHHHH
Q 016648 305 DLDDCL 310 (385)
Q Consensus 305 ~~~~l~ 310 (385)
+++++.
T Consensus 683 ~~~ev~ 688 (797)
T cd04300 683 TAEEVE 688 (797)
T ss_pred CHHHHH
Confidence 444443
No 190
>PRK14986 glycogen phosphorylase; Provisional
Probab=95.39 E-value=0.13 Score=50.56 Aligned_cols=130 Identities=15% Similarity=0.208 Sum_probs=93.7
Q ss_pred CCCCcEEEEEeeccccccHHH-HHHHHHhC------C-----CceEEEEeCCc---c-HHHHHHH----Hc---C-----
Q 016648 179 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDGP---Y-REELEKM----FT---G----- 230 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~~k~~~~-l~~a~~~~------~-----~~~l~i~G~g~---~-~~~l~~~----~~---~----- 230 (385)
.++...++++-|+...|...+ ++..+..+ | ...+++.|... . .+.+-++ .. .
T Consensus 540 dp~sLfd~qakR~heYKRq~LNil~~i~ry~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIk~I~~va~~in~Dp~v~ 619 (815)
T PRK14986 540 NPKALFDVQIKRIHEYKRQLMNVLHVITRYNRIKADPDAKWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIG 619 (815)
T ss_pred CcccceeeeehhhhhhhhhhHHHhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhccChhhc
Confidence 346677888999999999877 55554332 2 35677777421 1 1111111 11 1
Q ss_pred --CCeEEecccChHHHHHHHHhCcEEEEcCC--CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCC--CCeeEeeCCC
Q 016648 231 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNPG 304 (385)
Q Consensus 231 --~~i~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~--~~~g~~~~~~ 304 (385)
.+|.|+....-.-...++..||+-...|+ .|+.|++=+-+|.-|.+.+++-.|...|+. ++ ++||+.+..
T Consensus 620 ~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~nvEi~---e~vG~eN~~~fG~- 695 (815)
T PRK14986 620 DKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEML---EHVGEENIFIFGN- 695 (815)
T ss_pred CceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCchhHHH---HhcCCCcEEEeCC-
Confidence 15888888776777889999999998766 689999999999999999999999999988 54 789999864
Q ss_pred CHHHHHHH
Q 016648 305 DLDDCLSK 312 (385)
Q Consensus 305 ~~~~l~~~ 312 (385)
+++++.+.
T Consensus 696 ~~~ev~~~ 703 (815)
T PRK14986 696 TAEEVEAL 703 (815)
T ss_pred CHHHHHHH
Confidence 66666554
No 191
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=95.12 E-value=0.87 Score=41.20 Aligned_cols=98 Identities=11% Similarity=0.097 Sum_probs=62.0
Q ss_pred CCcEEEEEeecccccc--HHHHHHHHHhC--CCceEEEEeCCcc--HHHHHHHHc---CC-CeEEecccChHHHHHHHHh
Q 016648 181 DKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFIGDGPY--REELEKMFT---GM-PAVFTGMLLGEELSQAYAS 250 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~--~~~l~~a~~~~--~~~~l~i~G~g~~--~~~l~~~~~---~~-~i~~~g~~~~~~~~~~~~~ 250 (385)
++.+++..|.-.+.|. .+.+.++++.+ .+.+++++|...+ .+..++... .. .+.+.|..+-.++..+++.
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali~~ 262 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALIDH 262 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHh
Confidence 4566677776555554 33455555444 3678888875432 222233332 12 2557888888999999999
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
||++|.... |..= =|.|+|+|+|+--.+
T Consensus 263 a~l~v~nDS----Gp~H-lAaA~g~P~v~lfGp 290 (352)
T PRK10422 263 AQLFIGVDS----APAH-IAAAVNTPLICLFGA 290 (352)
T ss_pred CCEEEecCC----HHHH-HHHHcCCCEEEEECC
Confidence 999996542 3333 378999999975433
No 192
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=95.12 E-value=0.1 Score=51.16 Aligned_cols=127 Identities=16% Similarity=0.168 Sum_probs=89.0
Q ss_pred CCCCcEEEEEeeccccccHHH-HHHHHHhC------C-----CceEEEEeCCc-c---HHHHHHH----H---cC-----
Q 016648 179 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDGP-Y---REELEKM----F---TG----- 230 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~~k~~~~-l~~a~~~~------~-----~~~l~i~G~g~-~---~~~l~~~----~---~~----- 230 (385)
.++....+++-|+...|...+ ++..+..+ | ...+++.|... . .+.+-++ . ..
T Consensus 526 dp~slfdvq~kR~heYKRq~Lnil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~in~Dp~v~ 605 (798)
T PRK14985 526 NPQAIFDVQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVAEVINNDPLVG 605 (798)
T ss_pred CchhcchhhHhhhhhhhhhhhHhhhhHHHHHHHHhCCCcCCCCeEEEEeecCCCCcHHHHHHHHHHHHHHHHhcCChhhC
Confidence 345667788889999999777 55443322 3 25677777421 1 1111111 1 11
Q ss_pred --CCeEEecccChHHHHHHHHhCcEEEEcCC--CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCC--CCeeEeeCCC
Q 016648 231 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNPG 304 (385)
Q Consensus 231 --~~i~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~--~~~g~~~~~~ 304 (385)
.+|.|+....-.-...++..||+-...|. .|+.|++=+-+|.-|.+.++|-.|...|+. ++ ++||+.+..
T Consensus 606 ~~lkVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGanvEi~---e~vG~eN~f~fG~- 681 (798)
T PRK14985 606 DKLKVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIA---EQVGEENIFIFGH- 681 (798)
T ss_pred CceeEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccchHHHHH---HHhCcCcEEEeCC-
Confidence 15888888776777889999999988766 689999999999999999999999988887 43 678888864
Q ss_pred CHHHH
Q 016648 305 DLDDC 309 (385)
Q Consensus 305 ~~~~l 309 (385)
+++++
T Consensus 682 ~~~ev 686 (798)
T PRK14985 682 TVEQV 686 (798)
T ss_pred CHHHH
Confidence 44433
No 193
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=95.10 E-value=0.057 Score=42.89 Aligned_cols=75 Identities=24% Similarity=0.254 Sum_probs=48.5
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHh------CCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhC
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLL------CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAA 125 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~------~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 125 (385)
......++.+.+||+|++++++.. ++..++++.. |.++|+. -.+......+ ..-+.++..+
T Consensus 81 ~~~~~~il~r~rPdvii~nGpg~~-vp~~~~~~l~~~~~~~~~kiIyI-ES~aRv~~lS-----------lTGklly~~a 147 (170)
T PF08660_consen 81 FLQSLRILRRERPDVIISNGPGTC-VPVCLAAKLLRLLGLRGSKIIYI-ESFARVKTLS-----------LTGKLLYPFA 147 (170)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcee-eHHHHHHHHHHHhhccCCcEEEE-EeeeecCCCc-----------hHHHHHHHhC
Confidence 345556778889999999998543 3344456666 8888873 2211111111 1235567789
Q ss_pred CeEEEcChhHHHHH
Q 016648 126 DLTLVPSVAIGKDL 139 (385)
Q Consensus 126 d~ii~~s~~~~~~~ 139 (385)
|.+++.-+++++.+
T Consensus 148 D~f~VQW~~l~~~y 161 (170)
T PF08660_consen 148 DRFIVQWEELAEKY 161 (170)
T ss_pred CEEEEcCHHHHhHC
Confidence 99999999888775
No 194
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=94.95 E-value=0.15 Score=50.12 Aligned_cols=128 Identities=18% Similarity=0.201 Sum_probs=90.3
Q ss_pred CCCCcEEEEEeeccccccHHH-HHHHHHhC------C-----CceEEEEeCCc---c-HHHHHHH----H---cC-----
Q 016648 179 EPDKPLIVHVGRLGVEKSLDF-LKRVMDRL------P-----EARIAFIGDGP---Y-REELEKM----F---TG----- 230 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~~k~~~~-l~~a~~~~------~-----~~~l~i~G~g~---~-~~~l~~~----~---~~----- 230 (385)
.++....+++-|+...|...+ ++..+..+ | ...+++.|... . .+.+-++ . ..
T Consensus 524 dp~slfdvq~KR~heYKRq~LNil~ii~~y~~i~~~p~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v~ 603 (794)
T TIGR02093 524 DPNSIFDVQVKRLHEYKRQLLNVLHVIYLYNRIKEDPPKDIVPRTVIFGGKAAPGYHMAKLIIKLINSVAEVVNNDPAVG 603 (794)
T ss_pred CccccchhhheechhhhHHHHHHhhhHHHHHHHHhCCCcCCCCeEEEEEecCCCCcHHHHHHHHHHHHHHHHhccChhhC
Confidence 346677888999999999877 65554332 2 34677777421 1 1122121 1 11
Q ss_pred --CCeEEecccChHHHHHHHHhCcEEEEcCC--CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCC--CCeeEeeCCC
Q 016648 231 --MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD--GKIGYLFNPG 304 (385)
Q Consensus 231 --~~i~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~--~~~g~~~~~~ 304 (385)
.+|.|+....-.-...++..||+-...|. .|+.|++=+-+|.-|.+.++|-.|...|+. ++ ++|++++..
T Consensus 604 ~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGanvEi~---e~vG~eN~fiFG~- 679 (794)
T TIGR02093 604 DKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGANVEIR---EEVGAENIFIFGL- 679 (794)
T ss_pred CceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccchhHHHH---HHhCcccEEEcCC-
Confidence 15888888776777889999999988766 689999999999999999999999988888 44 678888764
Q ss_pred CHHHHH
Q 016648 305 DLDDCL 310 (385)
Q Consensus 305 ~~~~l~ 310 (385)
+++++.
T Consensus 680 ~~~ev~ 685 (794)
T TIGR02093 680 TVEEVE 685 (794)
T ss_pred CHHHHH
Confidence 444443
No 195
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=94.94 E-value=0.2 Score=38.01 Aligned_cols=90 Identities=21% Similarity=0.331 Sum_probs=56.8
Q ss_pred cEEEEEeeccccccHHHHHHH---------HHhCCCceEEE-EeCC-ccHH-HHHHHHcCCCeEEecccChHHHHHHHHh
Q 016648 183 PLIVHVGRLGVEKSLDFLKRV---------MDRLPEARIAF-IGDG-PYRE-ELEKMFTGMPAVFTGMLLGEELSQAYAS 250 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a---------~~~~~~~~l~i-~G~g-~~~~-~l~~~~~~~~i~~~g~~~~~~~~~~~~~ 250 (385)
..++.+|.-. .+.++.+ +.+..=.+++| +|.| ...+ ......+..++.+.++--..++.+.++.
T Consensus 5 ~vFVTVGtT~----Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I~~ 80 (170)
T KOG3349|consen 5 TVFVTVGTTS----FDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDIRS 80 (170)
T ss_pred EEEEEecccc----HHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHHhh
Confidence 4678888764 4444433 33333346666 7766 2211 2222212335556565555889999999
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
||++| ..+...+.+|.+..|+|.|+-
T Consensus 81 AdlVI----sHAGaGS~letL~l~KPlivV 106 (170)
T KOG3349|consen 81 ADLVI----SHAGAGSCLETLRLGKPLIVV 106 (170)
T ss_pred ccEEE----ecCCcchHHHHHHcCCCEEEE
Confidence 99999 455577899999999999864
No 196
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.64 E-value=0.63 Score=44.04 Aligned_cols=178 Identities=12% Similarity=0.185 Sum_probs=116.8
Q ss_pred CCCCcEEEEEeecccc--ccHHHHHHHHHhCCCceEEEEe-----CCccHHHHHHHHcC-CCeEEecccChHHHHHHHHh
Q 016648 179 EPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAFIG-----DGPYREELEKMFTG-MPAVFTGMLLGEELSQAYAS 250 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~~--k~~~~l~~a~~~~~~~~l~i~G-----~g~~~~~l~~~~~~-~~i~~~g~~~~~~~~~~~~~ 250 (385)
+++.+++..+..+..- +-++...+++++.|+-.+.+.- +......++++..+ .+|+|..-...+|-..-.+-
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~~L 835 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQL 835 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhhhh
Confidence 4455666666655332 4567778888888987776644 32333344444333 36888888888888888999
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccC--CCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHH
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED--QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQ 328 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~--~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 328 (385)
+|+.+-+....| -++-+|.+.+|+|+|+-....+..-+... ..-+.|-++ ..+.++..+.--++-.|.+..+.++.
T Consensus 836 aDv~LDTplcnG-hTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hli-ak~~eEY~~iaV~Latd~~~L~~lr~ 913 (966)
T KOG4626|consen 836 ADVCLDTPLCNG-HTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLI-AKNREEYVQIAVRLATDKEYLKKLRA 913 (966)
T ss_pred hhhcccCcCcCC-cccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHH-hhhHHHHHHHHHHhhcCHHHHHHHHH
Confidence 999986555444 34567999999999986543222111000 111122222 34888999988899899998888888
Q ss_pred HHHHHH-H--hCCHHHHHHHHHHHHHHHHHHHHH
Q 016648 329 AARQEM-E--KYDWRAATRTIRNEQYNAAIWFWR 359 (385)
Q Consensus 329 ~a~~~~-~--~~s~~~~~~~~~~~iy~~~~~~~~ 359 (385)
.-++.. . -|+-.+.+..+. .+|.+.-+..-
T Consensus 914 ~l~~~r~~splfd~~q~~~~LE-~~y~~MW~~y~ 946 (966)
T KOG4626|consen 914 KLRKARASSPLFDTKQYAKGLE-RLYLQMWKKYC 946 (966)
T ss_pred HHHHHhcCCCccCchHHHHHHH-HHHHHHHHHhc
Confidence 777764 3 399999999996 68887755443
No 197
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=94.28 E-value=4 Score=36.88 Aligned_cols=236 Identities=13% Similarity=0.156 Sum_probs=119.5
Q ss_pred CCCEEEeCCC----------chhHHHH-HHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 63 KPDIIHASSP----------GIMVFGA-LIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 63 ~pDiI~~~~~----------~~~~~~~-~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
+.|+++..+. ..+.+.. +.++...++|+++.-|+..|... ...+++....++.+..+++=
T Consensus 89 ~~d~~I~~Gg~l~~d~~~~~~~~~~~~~~~la~l~~kp~~~~g~svGP~~~---------~~s~~~~~~~~~~~s~i~vR 159 (385)
T COG2327 89 KADLIIIGGGGLLQDVTSSRSIIYYGGSILLARLAGKPTFFFGQSVGPLKH---------PLSRQLLNYVLGGCSAISVR 159 (385)
T ss_pred hCCEEEEcCcccccCccccceehhhHHHHHHHHHcCCCEEEEeccCCCccC---------HHHHHHHHHHhcCCcEEEEe
Confidence 6788877532 1122222 55677889999998888765432 23344677888999999998
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccc--------cHHHHHHH
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK--------SLDFLKRV 203 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k--------~~~~l~~a 203 (385)
.+...+.++..+. +..... |+.+.-+........ . ......+...+.+-.+.+.. ....+++-
T Consensus 160 D~~S~~llk~~gi----~a~l~~---D~Af~L~~~~~~~~~-~-~~~~~~~~~~i~lr~~~~~~t~~~~~~~~v~~~l~~ 230 (385)
T COG2327 160 DPVSYELLKQLGI----NARLVT---DPAFLLPASSQNATA-S-DVEAREKTVAITLRGLHPDNTAQRSILKYVNEALDL 230 (385)
T ss_pred cHHhHHHHHHcCC----CeEeec---Ccceecccccccccc-c-ccccccceEEEEecccCCchhhhHHHHHHHHHHHHH
Confidence 8888888886553 222222 332221111110000 0 00111233333333333322 22333333
Q ss_pred HHhCCC----ceEEEEeCCccHHH---HHHHHcC-CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCC
Q 016648 204 MDRLPE----ARIAFIGDGPYREE---LEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI 275 (385)
Q Consensus 204 ~~~~~~----~~l~i~G~g~~~~~---l~~~~~~-~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~ 275 (385)
++.... ++++-.+...+..- +...... .++.+..--..+++...+++||+.|..- +- +++=|++.|+
T Consensus 231 ~~~~~~~~~~i~~~~~~~s~d~~va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R----~H-saI~al~~g~ 305 (385)
T COG2327 231 VERQVKALWRITLIDYGASDDLAVADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMR----LH-SAIMALAFGV 305 (385)
T ss_pred HHHhhhcceEEEeeeccccchhHHHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeeh----hH-HHHHHHhcCC
Confidence 322222 22223333333322 2222222 2455444332467788999999998332 23 3555999999
Q ss_pred cEEEecCC-CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHH
Q 016648 276 PVVGVRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 321 (385)
Q Consensus 276 PvI~s~~~-~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~ 321 (385)
|+|+-... -...+.....-.....-..+.+.+.+.+...+.+.+.+
T Consensus 306 p~i~i~Y~~K~~~l~~~~gl~~~~~~i~~~~~~~l~~~~~e~~~~~~ 352 (385)
T COG2327 306 PAIAIAYDPKVRGLMQDLGLPGFAIDIDPLDAEILSAVVLERLTKLD 352 (385)
T ss_pred CeEEEeecHHHHHHHHHcCCCcccccCCCCchHHHHHHHHHHHhccH
Confidence 99986533 12222210011112223345577888888777766433
No 198
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=93.59 E-value=0.2 Score=35.64 Aligned_cols=76 Identities=14% Similarity=0.253 Sum_probs=48.6
Q ss_pred EEEEeC-CccHHHHHHHHcCCC--eEEe---cccChHH--HHHHHHhCcEEEEcCCCCC---CcHHHHHHHhcCCcEEEe
Q 016648 212 IAFIGD-GPYREELEKMFTGMP--AVFT---GMLLGEE--LSQAYASGDVFVMPSESET---LGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 212 l~i~G~-g~~~~~l~~~~~~~~--i~~~---g~~~~~~--~~~~~~~adi~v~ps~~e~---~~~~~~Ea~a~G~PvI~s 280 (385)
++|+|. ......+++..++.+ ..++ +.....+ ++..+..+|++|++...-+ .-..--+|-..|+|++.+
T Consensus 2 vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 2 VLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred EEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 567775 345556666666554 3334 3333334 8999999999998876432 233445677889999988
Q ss_pred cCCCCCc
Q 016648 281 RAGGIPD 287 (385)
Q Consensus 281 ~~~~~~e 287 (385)
+..+...
T Consensus 82 ~~~~~~~ 88 (97)
T PF10087_consen 82 RSRGVSS 88 (97)
T ss_pred CCCCHHH
Confidence 7555443
No 199
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=91.68 E-value=11 Score=34.70 Aligned_cols=140 Identities=17% Similarity=0.186 Sum_probs=71.7
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCC
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES 260 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~ 260 (385)
....++.+|.- +-.....+.+..-.-.++.|++.. .+..++++.+.+ ...++.+++...+..+|+++..+..
T Consensus 177 ~~~~vlvIGAG---em~~lva~~L~~~g~~~i~IaNRT--~erA~~La~~~~---~~~~~l~el~~~l~~~DvVissTsa 248 (414)
T COG0373 177 KDKKVLVIGAG---EMGELVAKHLAEKGVKKITIANRT--LERAEELAKKLG---AEAVALEELLEALAEADVVISSTSA 248 (414)
T ss_pred ccCeEEEEccc---HHHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHhC---CeeecHHHHHHhhhhCCEEEEecCC
Confidence 34456666632 223444444444333456666643 344455555544 3345559999999999999986542
Q ss_pred --CCCcHHHH-HHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH
Q 016648 261 --ETLGLVVL-EAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 334 (385)
Q Consensus 261 --e~~~~~~~-Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~ 334 (385)
.-.+...+ +++.--...+.-|.+-.+++-+...+-.+.++++ .|++...... |...+++...++...+
T Consensus 249 ~~~ii~~~~ve~a~~~r~~~livDiavPRdie~~v~~l~~v~l~~---iDDL~~iv~~---n~~~R~~~~~~ae~iI 319 (414)
T COG0373 249 PHPIITREMVERALKIRKRLLIVDIAVPRDVEPEVGELPNVFLYT---IDDLEEIVEE---NLEARKEEAAKAEAII 319 (414)
T ss_pred CccccCHHHHHHHHhcccCeEEEEecCCCCCCccccCcCCeEEEe---hhhHHHHHHH---hHHHHHHHHHHHHHHH
Confidence 22333333 4444444456667766555542111122345554 4444444433 2333444444444443
No 200
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=91.23 E-value=2.8 Score=32.75 Aligned_cols=85 Identities=15% Similarity=0.047 Sum_probs=51.8
Q ss_pred HHHhhccCCCEEEeCCCchhH-HHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChh
Q 016648 56 ISEVARFKPDIIHASSPGIMV-FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVA 134 (385)
Q Consensus 56 ~~~i~~~~pDiI~~~~~~~~~-~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~ 134 (385)
.++.....+|+|++.+.-... +.++ .....++|.++.+|+..-.+........-. -+....-...-.||.|++.|..
T Consensus 52 ~~~~~~~~~dll~aTsmldLa~l~gL-~p~l~~~p~ilYFHENQl~YP~~~~~~rd~-~~~~~ni~saLaAD~v~FNS~~ 129 (168)
T PF12038_consen 52 QQIPLSHSYDLLFATSMLDLATLRGL-RPDLANVPKILYFHENQLAYPVSPGQERDF-QYGMNNIYSALAADRVVFNSAF 129 (168)
T ss_pred hccccccCCCEEEeeccccHHHHHhh-ccCCCCCCEEEEEecCcccCCCCCCccccc-cHHHHHHHHHHhceeeeecchh
Confidence 456666788999999863222 2222 224568999999999654443222111110 1112233445679999999999
Q ss_pred HHHHHHHh
Q 016648 135 IGKDLEAA 142 (385)
Q Consensus 135 ~~~~~~~~ 142 (385)
-.+.+.+.
T Consensus 130 nr~sFL~~ 137 (168)
T PF12038_consen 130 NRDSFLDG 137 (168)
T ss_pred hHHHHHHH
Confidence 98887654
No 201
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=90.13 E-value=0.73 Score=42.64 Aligned_cols=75 Identities=15% Similarity=-0.007 Sum_probs=42.4
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccc-----cccchhHH--HHHHHHHHhCCeEEEcChh
Q 016648 62 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF-----SWLVKPMW--LVIKFLHRAADLTLVPSVA 134 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~ad~ii~~s~~ 134 (385)
.+||+||.|.. ...+.+.+++...|+|...+-|...-.-...... .-..+... ..+...++.||.||+.+..
T Consensus 400 ~~PdlI~GnYs-DgnlvA~LLs~~lgv~~~~iaHsLek~Ky~~s~~~w~e~e~~Yhfs~qftAd~iamn~adfIItST~Q 478 (550)
T PF00862_consen 400 GKPDLIIGNYS-DGNLVASLLSRKLGVTQCFIAHSLEKTKYEDSDLYWKEIEEKYHFSCQFTADLIAMNAADFIITSTYQ 478 (550)
T ss_dssp S--SEEEEEHH-HHHHHHHHHHHHHT-EEEEE-SS-HHHHHHTTTTTSHHHHHHH-HHHHHHHHHHHHHHSSEEEESSHH
T ss_pred CCCcEEEeccC-cchHHHHHHHhhcCCceehhhhccccccccccCCCHHHHHhhccchhhhhHHHHHhhcCCEEEEcchH
Confidence 58999999975 3445566788999999999999853211110000 11111111 2346678999999998765
Q ss_pred HHH
Q 016648 135 IGK 137 (385)
Q Consensus 135 ~~~ 137 (385)
...
T Consensus 479 EI~ 481 (550)
T PF00862_consen 479 EIA 481 (550)
T ss_dssp HHH
T ss_pred hhc
Confidence 444
No 202
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=89.71 E-value=0.4 Score=35.93 Aligned_cols=86 Identities=13% Similarity=0.074 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCceEEEEeCCcc----HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHh
Q 016648 197 LDFLKRVMDRLPEARIAFIGDGPY----REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 272 (385)
Q Consensus 197 ~~~l~~a~~~~~~~~l~i~G~g~~----~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a 272 (385)
-..+.+++.+.+++++.-.-+... .+.+...... .-.|..-.+++.+++..+|++|--|..+..-..+-.++.
T Consensus 13 G~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~---~~~~~~v~~~l~~~~~~~DVvIDfT~p~~~~~~~~~~~~ 89 (124)
T PF01113_consen 13 GRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGI---GPLGVPVTDDLEELLEEADVVIDFTNPDAVYDNLEYALK 89 (124)
T ss_dssp HHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTS---ST-SSBEBS-HHHHTTH-SEEEEES-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCc---CCcccccchhHHHhcccCCEEEEcCChHHhHHHHHHHHh
Confidence 345666776667766655442221 1111111111 111222226788889889999987765555556677888
Q ss_pred cCCcEEEecCCCC
Q 016648 273 SGIPVVGVRAGGI 285 (385)
Q Consensus 273 ~G~PvI~s~~~~~ 285 (385)
+|+|+|+...|..
T Consensus 90 ~g~~~ViGTTG~~ 102 (124)
T PF01113_consen 90 HGVPLVIGTTGFS 102 (124)
T ss_dssp HT-EEEEE-SSSH
T ss_pred CCCCEEEECCCCC
Confidence 9999998766653
No 203
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=89.50 E-value=1.9 Score=31.89 Aligned_cols=70 Identities=10% Similarity=0.059 Sum_probs=39.1
Q ss_pred HHHHHHhCcEEEEcC--CCCCCcHH--HHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHh
Q 016648 244 LSQAYASGDVFVMPS--ESETLGLV--VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 244 ~~~~~~~adi~v~ps--~~e~~~~~--~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~l 316 (385)
...++..||++|.-- .+..+... .--|.++|+|.|+-.-+....-+ ++-.+.-..-..++++.++.+..+
T Consensus 69 T~~li~~aDvvVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~HpL---KEvdaaA~avaetp~Qvv~iL~Yv 142 (144)
T TIGR03646 69 TRKLIEKADVVIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEELIHPL---KEVDNKAQAVVETPEQAIETLKYI 142 (144)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccH---HHHhHHHHHHhcCHHHHHHHHHHh
Confidence 457899999988642 12222222 23478899999987655444444 222222222234666666666544
No 204
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=88.40 E-value=2.5 Score=31.26 Aligned_cols=71 Identities=13% Similarity=0.120 Sum_probs=41.7
Q ss_pred HHHHHHhCcEEEEcC--CCCCCcHH--HHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 244 LSQAYASGDVFVMPS--ESETLGLV--VLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 244 ~~~~~~~adi~v~ps--~~e~~~~~--~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
...++..||++|.-- .+..+... .--|.++|+|.|+-.-.....-+ ++-.+.-..-..++++.++.+..++
T Consensus 66 T~~li~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~lh~~~~~HpL---KEvda~A~a~~et~~Qvv~iL~Yv~ 140 (141)
T PF11071_consen 66 TRTLIEKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITLHPEELHHPL---KEVDAAALAVAETPEQVVEILRYVL 140 (141)
T ss_pred HHHHHhhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhccccH---HHHhHhhHhhhCCHHHHHHHHHHHh
Confidence 457899999988542 12222222 23478899999987655544444 2222222333447777777776554
No 205
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 10 GT10 from CAZY comprises enzymes with two known activities; galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) and galactoside 3-fucosyltransferase (2.4.1.152 from EC). The galactoside 3-fucosyltransferases display similarities with the alpha-2 and alpha-6-fucosyltranferases []. The biosynthesis of the carbohydrate antigen sialyl Lewis X (sLe(x)) is dependent on the activity of an galactoside 3-fucosyltransferase. This enzyme catalyses the transfer of fucose from GDP-beta-fucose to the 3-OH of N-acetylglucosamine present in lactosamine acceptors []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 3(4)-L-fucosyltransferase (2.4.1.65 from EC) belongs to the Lewis blood group system and is associated with Le(a/b) antigen. ; GO: 0008417 fucosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane; PDB: 2NZX_B 2NZW_C 2NZY_C.
Probab=88.24 E-value=3 Score=37.61 Aligned_cols=120 Identities=9% Similarity=-0.007 Sum_probs=63.4
Q ss_pred EEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC--CCC-C
Q 016648 187 HVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE--SET-L 263 (385)
Q Consensus 187 ~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~--~e~-~ 263 (385)
++++-....+-..+++.+.+. +.+...|... -....+.++..++++...+++..-. .++ .
T Consensus 181 ~~Snc~~~~~R~~~~~~L~~~--~~vd~yG~c~---------------~~~~~~~~~~~~~~~~ykF~lafENs~c~dYi 243 (349)
T PF00852_consen 181 IVSNCNPHSGREEYVRELSKY--IPVDSYGKCG---------------NNNPCPRDCKLELLSKYKFYLAFENSNCPDYI 243 (349)
T ss_dssp --S-S--H-HHHHHHHHHHTT--S-EEE-SSTT-----------------SSS--S-HHHHHHTEEEEEEE-SS--TT--
T ss_pred EeeCcCCcccHHHHHHHHHhh--cCeEccCCCC---------------CCCCcccccccccccCcEEEEEecCCCCCCCC
Confidence 334434333344455555554 5566677540 0001222457788888888887533 333 3
Q ss_pred cHHHHHHHhcCCcEEEec--CCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHH
Q 016648 264 GLVVLEAMSSGIPVVGVR--AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETM 326 (385)
Q Consensus 264 ~~~~~Ea~a~G~PvI~s~--~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 326 (385)
.-++.+|+..|+-.|.-. .+.+.++++ .+.--.+-+..++++|++.|..+.+|++++.+.
T Consensus 244 TEK~~~al~~g~VPI~~G~~~~~~~~~~P---~~SfI~~~df~s~~~La~yl~~l~~n~~~Y~~y 305 (349)
T PF00852_consen 244 TEKFWNALLAGTVPIYWGPPRPNYEEFAP---PNSFIHVDDFKSPKELADYLKYLDKNDELYNKY 305 (349)
T ss_dssp -HHHHHHHHTTSEEEEES---TTHHHHS----GGGSEEGGGSSSHHHHHHHHHHHHT-HHHHH--
T ss_pred CHHHHHHHHCCeEEEEECCEecccccCCC---CCCccchhcCCCHHHHHHHHHHHhcCHHHHhhh
Confidence 568999999996555444 556666662 222222334558999999999999999887654
No 206
>PF12996 DUF3880: DUF based on E. rectale Gene description (DUF3880); InterPro: IPR024542 This entry represents proteins of unknown function. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=87.67 E-value=1.4 Score=29.87 Aligned_cols=64 Identities=14% Similarity=0.091 Sum_probs=48.0
Q ss_pred HHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeecc
Q 016648 120 FLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLG 192 (385)
Q Consensus 120 ~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~ 192 (385)
.+...+|.|++......+.+++.+. .++..+|-++++..+.+....... ...-.--|.|+|+.-
T Consensus 14 ~i~~~~~~iFt~D~~~~~~~~~~G~---~~V~yLPLAa~~~~~~p~~~~~~~------~~~~~~dIsFVG~~y 77 (79)
T PF12996_consen 14 SIANSYDYIFTFDRSFVEEYRNLGA---ENVFYLPLAANPERFRPIPVDPEE------RKKYECDISFVGSLY 77 (79)
T ss_pred hhCCCCCEEEEECHHHHHHHHHcCC---CCEEEccccCCHHHhCcccCCccc------ccccCCCEEEeCcCc
Confidence 4578899999999999999999753 589999999999988876442110 112334599999864
No 207
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=87.27 E-value=5.7 Score=29.87 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=48.2
Q ss_pred ceEEE-EeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe-cCCCCCc
Q 016648 210 ARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGGIPD 287 (385)
Q Consensus 210 ~~l~i-~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s-~~~~~~e 287 (385)
.++++ +|+|...+ -...++.||-..+++..+...|.+++. .+.-.+++.++..++|.|.- +..-+.|
T Consensus 31 e~lIvQyGn~d~kp-------vagl~v~~F~~~~kiQsli~darIVIS----HaG~GSIL~~~rl~kplIv~pr~s~y~e 99 (161)
T COG5017 31 EELIVQYGNGDIKP-------VAGLRVYGFDKEEKIQSLIHDARIVIS----HAGEGSILLLLRLDKPLIVVPRSSQYQE 99 (161)
T ss_pred hheeeeecCCCccc-------ccccEEEeechHHHHHHHhhcceEEEe----ccCcchHHHHhhcCCcEEEEECchhHHH
Confidence 34444 78765433 123689999988999999999997773 23345788999999999854 4444455
Q ss_pred cc
Q 016648 288 II 289 (385)
Q Consensus 288 ~~ 289 (385)
.+
T Consensus 100 lv 101 (161)
T COG5017 100 LV 101 (161)
T ss_pred hh
Confidence 54
No 208
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=87.23 E-value=15 Score=30.15 Aligned_cols=77 Identities=10% Similarity=0.064 Sum_probs=50.3
Q ss_pred CceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcc
Q 016648 209 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDI 288 (385)
Q Consensus 209 ~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~ 288 (385)
+.++.++.. ...+.+.++.....+.+.... -....+..+|+++..+..+.....+.+....|++|-+.+.+...++
T Consensus 33 ga~V~VIs~-~~~~~l~~l~~~~~i~~~~~~---~~~~~l~~adlViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~f 108 (202)
T PRK06718 33 GAHIVVISP-ELTENLVKLVEEGKIRWKQKE---FEPSDIVDAFLVIAATNDPRVNEQVKEDLPENALFNVITDAESGNV 108 (202)
T ss_pred CCeEEEEcC-CCCHHHHHHHhCCCEEEEecC---CChhhcCCceEEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCeE
Confidence 467777764 333456666655556654432 1134467899998887777777777777788898887776665555
Q ss_pred c
Q 016648 289 I 289 (385)
Q Consensus 289 ~ 289 (385)
+
T Consensus 109 ~ 109 (202)
T PRK06718 109 V 109 (202)
T ss_pred E
Confidence 4
No 209
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=86.54 E-value=4.1 Score=38.35 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=57.1
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcC-CcEEEecCC--CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 242 EELSQAYASGDVFVMPSESETLGLVVLEAMSSG-IPVVGVRAG--GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G-~PvI~s~~~--~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
..+.+.|+.|.+++.|...+.....+.||+..| +|||.++.- ...+.+ +...-+++++..+.... +.++|.
T Consensus 335 ~~y~~~m~~S~FCL~p~Gd~~ts~R~fdai~~gCvPViisd~~~lpf~~~~---d~~~fSV~v~~~~v~~~---~~~iL~ 408 (464)
T KOG1021|consen 335 LNYMEGMQDSKFCLCPPGDTPTSPRLFDAIVSGCVPVIISDGIQLPFGDVL---DWTEFSVFVPEKDVPEL---IKNILL 408 (464)
T ss_pred chHHHHhhcCeEEECCCCCCcccHhHHHHHHhCCccEEEcCCcccCcCCCc---cceEEEEEEEHHHhhhH---HHHHHH
Confidence 577888999999999999998888999999999 599988753 333444 33445555543333333 344433
Q ss_pred --CHHHHHHHHHHHHHHH
Q 016648 319 --NQELRETMGQAARQEM 334 (385)
Q Consensus 319 --~~~~~~~~~~~a~~~~ 334 (385)
..+....|.++..+.+
T Consensus 409 ~i~~~~~~~m~~~v~~~v 426 (464)
T KOG1021|consen 409 SIPEEEVLRMRENVIRLV 426 (464)
T ss_pred hcCHHHHHHHHHHHHHHH
Confidence 2334455555555433
No 210
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=85.72 E-value=26 Score=31.37 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=66.6
Q ss_pred CCCceEEEEeCCccHHHHHHHHcCC---CeEEecc----cChHHHH----HHHHhCcEEEEcC--CCCCCcHHHHHHHhc
Q 016648 207 LPEARIAFIGDGPYREELEKMFTGM---PAVFTGM----LLGEELS----QAYASGDVFVMPS--ESETLGLVVLEAMSS 273 (385)
Q Consensus 207 ~~~~~l~i~G~g~~~~~l~~~~~~~---~i~~~g~----~~~~~~~----~~~~~adi~v~ps--~~e~~~~~~~Ea~a~ 273 (385)
+.+-++.++|.|+..+...+...+. ++.+... .+.+++. .+...+|+++..| ..-..|....|.+..
T Consensus 172 l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~ 251 (338)
T PRK00676 172 SKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVVREELSFQDPYDVIFFGSSESAYAFPHLSWESLAD 251 (338)
T ss_pred ccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhh
Confidence 3456777777776555444433322 2333222 2334443 6678999999863 233345555555543
Q ss_pred CCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 016648 274 GIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 353 (385)
Q Consensus 274 G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~ 353 (385)
-.+-+.-|..-.+++- +.....+..++ |.|+|.+.+.+ |...+++...++...+ +..+.++. +.|++
T Consensus 252 ~~~r~~iDLAvPRdId-~v~~~~~v~Ly---~iDdL~~i~~~---n~~~R~~~~~~ae~iI-----~~~~~~~~-~~~~~ 318 (338)
T PRK00676 252 IPDRIVFDFNVPRTFP-WSETPFPHRYL---DMDFISEWVQK---HLQCRKEVNNKHKLSL-----REAAYKQW-ESYEK 318 (338)
T ss_pred ccCcEEEEecCCCCCc-cccccCCcEEE---EhHHHHHHHHH---HHHHHHHHHHHHHHHH-----HHHHHHHH-HHHHH
Confidence 2212444544333331 11222333344 56666665554 3334444445554443 34455555 46665
Q ss_pred HHH
Q 016648 354 AIW 356 (385)
Q Consensus 354 ~~~ 356 (385)
=+.
T Consensus 319 ~~~ 321 (338)
T PRK00676 319 KLS 321 (338)
T ss_pred HHh
Confidence 443
No 211
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=82.22 E-value=16 Score=32.91 Aligned_cols=127 Identities=13% Similarity=-0.001 Sum_probs=78.7
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEc--CC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP--SE 259 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~p--s~ 259 (385)
+.....+.+..+...-..+++.+.+. +++.+.|..--. .....+..++.+.++...++|.- |.
T Consensus 197 ~~~aw~vSnc~~~~~R~~~~~~L~k~--l~iD~YG~c~~~-------------~~~~~~~~~~~~~~s~YKFyLAfENS~ 261 (372)
T KOG2619|consen 197 KLAAWLVSNCIPRSARLDYYKELMKH--LEIDSYGECLRK-------------NANRDPSDCLLETLSHYKFYLAFENSN 261 (372)
T ss_pred ceeeeeccccCcchHHHHHHHHHHhh--Cceeeccccccc-------------cccCCCCCcceeecccceEEEEecccC
Confidence 34555666666666555555555543 778888843110 11122334566667777777753 22
Q ss_pred CC-CCcHHHHHHHhcC-CcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHH
Q 016648 260 SE-TLGLVVLEAMSSG-IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 327 (385)
Q Consensus 260 ~e-~~~~~~~Ea~a~G-~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 327 (385)
.+ =..-++.-|+-+| +|||... +...++++ +.-.-.+-+..++++|++.|.++-+|+..+.+.-
T Consensus 262 c~DYVTEKfw~al~~gsVPVvlg~-~n~e~fvP---~~SfI~vdDF~s~~ela~ylk~L~~n~~~Y~~Yf 327 (372)
T KOG2619|consen 262 CEDYVTEKFWNALDAGSVPVVLGP-PNYENFVP---PDSFIHVDDFQSPQELAAYLKKLDKNPAAYLSYF 327 (372)
T ss_pred CcccccHHHHhhhhcCcccEEECC-ccccccCC---CcceEehhhcCCHHHHHHHHHHhhcCHHHHHHHH
Confidence 22 2356777888888 6777666 66677762 2222234446699999999999999998776643
No 212
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=81.07 E-value=31 Score=28.80 Aligned_cols=122 Identities=7% Similarity=-0.070 Sum_probs=66.0
Q ss_pred CceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHH-hcCCcEEEecCCCCCc
Q 016648 209 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM-SSGIPVVGVRAGGIPD 287 (385)
Q Consensus 209 ~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~-a~G~PvI~s~~~~~~e 287 (385)
+.++.++...- .+++..+....++.+...--. ...+..+++++..+..+.....+.+.. +.|++|.+.+.+...+
T Consensus 48 gA~VtVVap~i-~~el~~l~~~~~i~~~~r~~~---~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~d 123 (223)
T PRK05562 48 GCYVYILSKKF-SKEFLDLKKYGNLKLIKGNYD---KEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGL 123 (223)
T ss_pred CCEEEEEcCCC-CHHHHHHHhCCCEEEEeCCCC---hHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCe
Confidence 57788887433 345666666556665543211 223578888887776666666655544 6699998877665555
Q ss_pred ccccC--CCCCeeEee-CCC----CHHHHHHHHhHhhcCHHHHHHHHHHHHHHH
Q 016648 288 IIPED--QDGKIGYLF-NPG----DLDDCLSKLEPLLYNQELRETMGQAARQEM 334 (385)
Q Consensus 288 ~~~~~--~~~~~g~~~-~~~----~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~ 334 (385)
++-+. ..+.--+-+ ..+ =...+.+.|++++.+-+...+.....|+.+
T Consensus 124 Fi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~~l~~~~~l~~~l~~~R~~v 177 (223)
T PRK05562 124 CIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKNFLKKYDDFIEYVTKIRNKA 177 (223)
T ss_pred EEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54210 222222212 212 244566666666644333444444444444
No 213
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=78.97 E-value=31 Score=31.23 Aligned_cols=91 Identities=12% Similarity=0.092 Sum_probs=61.1
Q ss_pred CCCcEEEEEeeccccccHHHHHHHHHhCCC-ceEEEEeCCccHHHHHHHHc-------------CCCeEEecccChHHHH
Q 016648 180 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPE-ARIAFIGDGPYREELEKMFT-------------GMPAVFTGMLLGEELS 245 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~-~~l~i~G~g~~~~~l~~~~~-------------~~~i~~~g~~~~~~~~ 245 (385)
++...+..++. +.-.+..++++++..+. +.+++.+ |.....+..... ...+.+++++++++..
T Consensus 182 ~~~~~vslF~Y--e~~~l~~ll~~~~~~~~pv~llvp~-g~~~~~~~~~~~~~~~~~g~~~~~g~l~l~~lPF~~Q~~yD 258 (374)
T PF10093_consen 182 PGALRVSLFCY--ENAALASLLDAWAASPKPVHLLVPE-GRALNSLAAWLGDALLQAGDSWQRGNLTLHVLPFVPQDDYD 258 (374)
T ss_pred CCCeEEEEEeC--CchHHHHHHHHHhcCCCCeEEEecC-CccHHHHHHHhccccccCccccccCCeEEEECCCCCHHHHH
Confidence 34444544442 22238889999987754 5555544 444444433332 1148899999999999
Q ss_pred HHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 246 QAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 246 ~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
+++-.||+-++=. --+.+-|.-+|+|.|
T Consensus 259 ~LLw~cD~NfVRG-----EDSfVRAqwAgkPFv 286 (374)
T PF10093_consen 259 RLLWACDFNFVRG-----EDSFVRAQWAGKPFV 286 (374)
T ss_pred HHHHhCccceEec-----chHHHHHHHhCCCce
Confidence 9999999966432 236888999999998
No 214
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=78.71 E-value=56 Score=30.34 Aligned_cols=120 Identities=16% Similarity=0.153 Sum_probs=63.0
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCC-eEEecccChHHHHHHHHhCcEEEEcCCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMP-AVFTGMLLGEELSQAYASGDVFVMPSES 260 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~-i~~~g~~~~~~~~~~~~~adi~v~ps~~ 260 (385)
...++.+|.-.-. ..+...+....--++.++.... +..+.+..+.+ .. .++.+++.+.+..+|+++..+..
T Consensus 181 ~kkvlviGaG~~a---~~va~~L~~~g~~~I~V~nRt~--~ra~~La~~~~~~~---~~~~~~l~~~l~~aDiVI~aT~a 252 (414)
T PRK13940 181 SKNVLIIGAGQTG---ELLFRHVTALAPKQIMLANRTI--EKAQKITSAFRNAS---AHYLSELPQLIKKADIIIAAVNV 252 (414)
T ss_pred CCEEEEEcCcHHH---HHHHHHHHHcCCCEEEEECCCH--HHHHHHHHHhcCCe---EecHHHHHHHhccCCEEEECcCC
Confidence 3456677753222 3444555443334677777543 23344444322 22 33448889999999999987653
Q ss_pred CCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHh
Q 016648 261 ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLE 314 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~ 314 (385)
... ..-. .+.-+.|.+.-|.+-.+++-+...+-.+-.++ |.|++.+.+.
T Consensus 253 ~~~-vi~~-~~~~~~~~~~iDLavPRdidp~v~~l~~v~l~---~iDdl~~i~~ 301 (414)
T PRK13940 253 LEY-IVTC-KYVGDKPRVFIDISIPQALDPKLGELEQNVYY---CVDDINAVIE 301 (414)
T ss_pred CCe-eECH-HHhCCCCeEEEEeCCCCCCCccccCcCCeEEE---eHHHHHHHHH
Confidence 221 1112 23357888888876555543221221223344 5555554444
No 215
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS. This fungus produces a thick extracellular polysaccharide capsule which is well recognised as a virulence factor. CAP10 is required for capsule formation and virulence [].
Probab=78.29 E-value=16 Score=33.60 Aligned_cols=88 Identities=10% Similarity=-0.040 Sum_probs=59.9
Q ss_pred CCcHHHHHHHhcCCcEEEecCC---CCCcccccCCCCCeeEeeCC-CCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHH-h
Q 016648 262 TLGLVVLEAMSSGIPVVGVRAG---GIPDIIPEDQDGKIGYLFNP-GDLDDCLSKLEPLLYNQELRETMGQAARQEME-K 336 (385)
Q Consensus 262 ~~~~~~~Ea~a~G~PvI~s~~~---~~~e~~~~~~~~~~g~~~~~-~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~-~ 336 (385)
+++..+.--|+||-.|+..+.. -..+.+ .....-+-+.. ++.++|.++|+-+.+|++..++++++|+++++ .
T Consensus 225 ~~S~RlkylL~c~SvVl~~~~~~~e~f~~~L---~P~vHYVPV~~~~d~sdL~~~v~w~~~~~~~A~~IA~~g~~f~~~~ 301 (395)
T PF05686_consen 225 AWSGRLKYLLACNSVVLKVKSPYYEFFYRAL---KPWVHYVPVKRDDDLSDLEEKVEWLNAHDDEAQRIAENGQRFAREY 301 (395)
T ss_pred eeehhHHHHHcCCceEEEeCCcHHHHHHhhh---cccccEEEeccccchhhHHHHhhhcccChHHHHHHHHHHHHHHHHH
Confidence 4556666668888888865432 122223 33333344443 47899999999999999999999999999984 5
Q ss_pred CCHHHHHHHHHHHHHHH
Q 016648 337 YDWRAATRTIRNEQYNA 353 (385)
Q Consensus 337 ~s~~~~~~~~~~~iy~~ 353 (385)
.+.+.+..-+. .++.+
T Consensus 302 L~~~~~~~Y~~-~LL~e 317 (395)
T PF05686_consen 302 LTMEDVYCYWR-RLLLE 317 (395)
T ss_pred hhhhHHHHHHH-HHHHH
Confidence 88877766654 34443
No 216
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=77.46 E-value=24 Score=32.11 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=56.0
Q ss_pred cccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCe-EEecccChHHHHHHHHh--CcEEEEcCCCCCCcHHHHHH
Q 016648 194 EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEA 270 (385)
Q Consensus 194 ~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i-~~~g~~~~~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea 270 (385)
.++.+.+.+..+++.. +++.+++......++......++ .+.|. +.+.++.+. +|+++........-..+++|
T Consensus 36 ~~n~~~l~~q~~~f~p-~~v~i~~~~~~~~l~~~l~~~~~~v~~G~---~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~A 111 (385)
T PRK05447 36 GKNVELLAEQAREFRP-KYVVVADEEAAKELKEALAAAGIEVLAGE---EGLCELAALPEADVVVAAIVGAAGLLPTLAA 111 (385)
T ss_pred CCCHHHHHHHHHHhCC-CEEEEcCHHHHHHHHHhhccCCceEEECh---hHHHHHhcCCCCCEEEEeCcCcccHHHHHHH
Confidence 4778888888888743 56666665555566654433234 34443 677777775 47888766543333568899
Q ss_pred HhcCCcEEEec
Q 016648 271 MSSGIPVVGVR 281 (385)
Q Consensus 271 ~a~G~PvI~s~ 281 (385)
+.+|++|.+.+
T Consensus 112 i~aGK~VaLAN 122 (385)
T PRK05447 112 IRAGKRIALAN 122 (385)
T ss_pred HHCCCcEEEeC
Confidence 99999999865
No 217
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme.
Probab=76.34 E-value=41 Score=28.86 Aligned_cols=89 Identities=4% Similarity=-0.033 Sum_probs=58.5
Q ss_pred CCCcHHHHHHHhcCCcEEEecCC---CCCcccccCCCCCeeEeeCCC-CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHh
Q 016648 261 ETLGLVVLEAMSSGIPVVGVRAG---GIPDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYNQELRETMGQAARQEMEK 336 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s~~~---~~~e~~~~~~~~~~g~~~~~~-~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~ 336 (385)
.+++..+.=-|+|+-.|+..... -..+.+ .....=+-+..+ +.+++.++|+-+.+++++.+++++++++++++
T Consensus 155 ~~~S~rl~~~l~~~Svvl~~~~~~~~~~~~~L---~P~~HYvPv~~d~sd~~l~~~i~~~~~~~~~a~~Ia~~~~~~~~~ 231 (256)
T smart00672 155 VAWSVRLKYILACDSVVLKVKPEYYEFFSRGL---QPWVHYWPIKSDLSCRELKEAVDWGNEHDKKAQEIGKRGSEFIQQ 231 (256)
T ss_pred ccchhhHHHHHhcCceEEEeCCchhHHHHhcc---cCccceEEeeCCCchhhHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 35566677788888888866532 122223 223332333322 22449999999999999999999999999865
Q ss_pred -CCHHHHHHHHHHHHHHH
Q 016648 337 -YDWRAATRTIRNEQYNA 353 (385)
Q Consensus 337 -~s~~~~~~~~~~~iy~~ 353 (385)
.+.+.+..-+. .+..+
T Consensus 232 ~L~~~~~~~Y~~-~ll~e 248 (256)
T smart00672 232 NLSMEDVYDYMF-HLLQE 248 (256)
T ss_pred HcCHHHHHHHHH-HHHHH
Confidence 88888877665 34443
No 218
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth []. Periplasmic binding proteins of a new family, particularly well represented in this organism (and more generally in beta-proteobacteria), have been called Bug receptors []. They adopt a characteristic Venus flytrap fold with two globular domains bisected by a ligand-binding cleft. The family is specific for carboxylated solutes, with a characteristic mode of binding involving two highly conserved beta strand-beta turn-alpha helix motifs originating from each domain. These two motifs form hydrogen bonds with a carboxylate group of the ligand, both directly and via conserved water molecules, and have thus been termed the carboxylate pincers. Domain 1 recognises the ligand and the carboxylate group serves as an initial anchoring point. Domain 2 discriminates between productively and non-productively bound ligands as proper interactions with this domain is needed for the of the closed conformation []. BugE has a glutamate bound ligand. No charged residues are involved in glutamate binding by BugE, unlike what has been described for all glutamate receptors reported so far. The Bug architecture is highly conserved despite limited sequence identity [].; GO: 0030288 outer membrane-bounded periplasmic space; PDB: 2QPQ_C 2DVZ_A 2F5X_A.
Probab=75.39 E-value=41 Score=29.17 Aligned_cols=140 Identities=18% Similarity=0.149 Sum_probs=69.2
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCC-ceEEEEeCCccHHHHHHHH---cCCCeEEecccChHHHHHHHHh--CcEEEE
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPE-ARIAFIGDGPYREELEKMF---TGMPAVFTGMLLGEELSQAYAS--GDVFVM 256 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~-~~l~i~G~g~~~~~l~~~~---~~~~i~~~g~~~~~~~~~~~~~--adi~v~ 256 (385)
..++.++.-.+.++++.+++.+++.|. +.+-..|.|.......... ...++.+.++-...+...-+-. .|+.+.
T Consensus 79 ~~vl~v~~dsp~~t~~eli~~ak~~p~~~~~g~~g~g~~~hl~~~~l~~~~G~~~~~Vpy~G~~~~~~allgG~vd~~~~ 158 (274)
T PF03401_consen 79 PNVLVVRADSPYKTLEELIEYAKANPGKLTFGSSGPGSSDHLAAALLAKAAGIKFTHVPYDGGAEALTALLGGHVDAAFG 158 (274)
T ss_dssp EEEEEEETTSS-SSHHHHHHHHHCSCCC-EEEESSTTSHHHHHHHHHHHHHT---EEEE-SSHHHHHHHHHTTSSSEEEE
T ss_pred ceEEEEeCCCccccHHHHHHHHHhCCCCeEEEecCCCchHHHHHHHHHHHhCCceEEEEeCCccHHHHHHhCCeeeEEee
Confidence 457777877889999999999998764 5555555554333222221 1334555565544444443333 455542
Q ss_pred cCCCCCCcHHHHHHHhcCC--cEEEec------CCCCCccccc-----CCCCCeeEeeCCCCHHHHHHHHhHh----hcC
Q 016648 257 PSESETLGLVVLEAMSSGI--PVVGVR------AGGIPDIIPE-----DQDGKIGYLFNPGDLDDCLSKLEPL----LYN 319 (385)
Q Consensus 257 ps~~e~~~~~~~Ea~a~G~--PvI~s~------~~~~~e~~~~-----~~~~~~g~~~~~~~~~~l~~~i~~l----l~~ 319 (385)
. ..........|. |+.++. .+.++-+-+. ....-.|++++.+.+++..+.+.++ ++|
T Consensus 159 ~------~~~~~~~~~~G~~k~Lav~~~~r~~~~pdvPT~~E~G~~d~~~~~~~g~~~p~gtp~~~~~~l~~a~~~~~~~ 232 (274)
T PF03401_consen 159 S------PGEALPYVEAGDLKPLAVFSDERSPALPDVPTFKEQGYPDIVFGSWRGLFAPKGTPDEIVDKLADAIKKALED 232 (274)
T ss_dssp E------HHHHHHHHHTTSEEEEEECSSS-BTTCTTS-BTTTTT-TTG--EEEEEEEEETTS-HHHHHHHHHHHHHHHT-
T ss_pred c------HHHHHHHHhCCCceEEEEecCccccccCCCCCHHHhCccceeeeeeeeeecCCCCCHHHHHHHHHHHHHHhCC
Confidence 2 334566666674 222221 1111111100 0123357788888877766555554 457
Q ss_pred HHHHHHHHH
Q 016648 320 QELRETMGQ 328 (385)
Q Consensus 320 ~~~~~~~~~ 328 (385)
++..+.+.+
T Consensus 233 pe~~~~~~~ 241 (274)
T PF03401_consen 233 PEFQEFLEK 241 (274)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766554443
No 219
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=72.92 E-value=23 Score=25.82 Aligned_cols=88 Identities=16% Similarity=0.192 Sum_probs=53.1
Q ss_pred EEEEEeeccccccHHHHHHHHHhC-CCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCC
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 260 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~-~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~ 260 (385)
.++.+|.-.. | ...+.++... ++.++.-+-+ +..+..+...+..++.. + .++.++++ ..|+++..+..
T Consensus 2 ~v~iiG~G~~--g-~~~~~~~~~~~~~~~v~~v~d-~~~~~~~~~~~~~~~~~--~---~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSI--G-RRHLRALLRSSPDFEVVAVCD-PDPERAEAFAEKYGIPV--Y---TDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHH--H-HHHHHHHHHTTTTEEEEEEEC-SSHHHHHHHHHHTTSEE--E---SSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHH--H-HHHHHHHHhcCCCcEEEEEEe-CCHHHHHHHHHHhcccc--h---hHHHHHHHhhcCCEEEEecCC
Confidence 3556664222 2 2334445444 6776653332 23344555455555552 2 34556666 68888887776
Q ss_pred CCCcHHHHHHHhcCCcEEEe
Q 016648 261 ETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s 280 (385)
..-...+.+++..|++|++-
T Consensus 73 ~~h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 73 SSHAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp GGHHHHHHHHHHTTSEEEEE
T ss_pred cchHHHHHHHHHcCCEEEEE
Confidence 66677889999999999974
No 220
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=71.02 E-value=10 Score=29.64 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=48.9
Q ss_pred HHHHHHHHhCcEEEEcCC------CCCCcHHHHHHHhcCCcEEEecC-----CCCCcccccCCCCCeeEe-eCCCCHHHH
Q 016648 242 EELSQAYASGDVFVMPSE------SETLGLVVLEAMSSGIPVVGVRA-----GGIPDIIPEDQDGKIGYL-FNPGDLDDC 309 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~------~e~~~~~~~Ea~a~G~PvI~s~~-----~~~~e~~~~~~~~~~g~~-~~~~~~~~l 309 (385)
..+...+..||+.+.--. ...|.-.+-|.|-+++|+|++=. +...++ .....-++ .++.|-+.+
T Consensus 92 ~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~i----k~~~~v~v~lt~~NR~~i 167 (179)
T COG1618 92 PALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRI----KKLGGVYVFLTPENRNRI 167 (179)
T ss_pred HHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcCCCcEEEEEecccCChHHHHh----hhcCCEEEEEccchhhHH
Confidence 345667778999987432 23456678889999999998743 222233 33333344 788888888
Q ss_pred HHHHhHhhcC
Q 016648 310 LSKLEPLLYN 319 (385)
Q Consensus 310 ~~~i~~ll~~ 319 (385)
...|..+|..
T Consensus 168 ~~~Il~~L~~ 177 (179)
T COG1618 168 LNEILSVLKG 177 (179)
T ss_pred HHHHHHHhcc
Confidence 8888777654
No 221
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=70.80 E-value=38 Score=29.20 Aligned_cols=90 Identities=11% Similarity=0.171 Sum_probs=58.1
Q ss_pred HHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc--
Q 016648 242 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-- 318 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~-- 318 (385)
..-..-+++||++|.-.. .|++=.++++.. .+.+++....++..+ - ...+.-+..++.+...+++.|.+.+.
T Consensus 44 p~d~~~l~~ADliv~~G~~lE~~~~k~~~~~-~~~~v~~~~~~~~~~-~---~~~dPH~Wldp~n~~~~a~~I~~~L~~~ 118 (264)
T cd01020 44 PTDAAKVSTADIVVYNGGGYDPWMTKLLADT-KDVIVIAADLDGHDD-K---EGDNPHLWYDPETMSKVANALADALVKA 118 (264)
T ss_pred HHHHHHHhhCCEEEEeCCCchHHHHHHHHhc-CCceEEeeecccccC-C---CCCCCceecCHhHHHHHHHHHHHHHHHh
Confidence 345566889999887643 466656666655 455666554433211 1 12345567788888889998888886
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 016648 319 NQELRETMGQAARQEMEK 336 (385)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~ 336 (385)
||+......+++.++.++
T Consensus 119 dP~~~~~y~~N~~~~~~~ 136 (264)
T cd01020 119 DPDNKKYYQANAKKFVAS 136 (264)
T ss_pred CcccHHHHHHHHHHHHHH
Confidence 777666777777766544
No 222
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=69.24 E-value=27 Score=25.14 Aligned_cols=76 Identities=8% Similarity=0.180 Sum_probs=52.8
Q ss_pred ccHHHHHHHHHhCCCceEEEEeCC---ccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHH
Q 016648 195 KSLDFLKRVMDRLPEARIAFIGDG---PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 271 (385)
Q Consensus 195 k~~~~l~~a~~~~~~~~l~i~G~g---~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 271 (385)
-|.+...++++. .++.++|+... ...+++..++...+|.+..+.+.+|+-..+-...+.+..-..+++...+++.+
T Consensus 20 ~G~~~v~~aik~-gk~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk~~~~~iai~d~g~a~~l~~~~ 98 (104)
T PRK05583 20 EGYNKCEEAIKK-KKVYLIIISNDISENSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDEIKILGVKDKNMAKKLLKLW 98 (104)
T ss_pred ecHHHHHHHHHc-CCceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEecCHHHHHHHhCCCCeEEEEEeChHHHHHHHHHH
Confidence 356677777776 46788887733 23456666666666666666677999999888777666666777777777765
No 223
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=69.17 E-value=48 Score=31.15 Aligned_cols=112 Identities=28% Similarity=0.334 Sum_probs=71.2
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHhC--cEEEEcCC-CCCCcHHHHHHHhc---CCcEEE-ecC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASG--DVFVMPSE-SETLGLVVLEAMSS---GIPVVG-VRA 282 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~a--di~v~ps~-~e~~~~~~~Ea~a~---G~PvI~-s~~ 282 (385)
+++++-+... ...+.......+......-+.++....+... |++++-.+ .+.-|..+++.+.. ++|||. |..
T Consensus 6 ~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~Tg~ 85 (464)
T COG2204 6 RILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSESPFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVMTGH 85 (464)
T ss_pred CEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEEeCC
Confidence 3556665433 2334444444444444444447777777776 55655443 34557777776655 699974 556
Q ss_pred CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHH
Q 016648 283 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL 322 (385)
Q Consensus 283 ~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~ 322 (385)
+.+...++..+.|-..++..|-+.+.+...+.+.++....
T Consensus 86 g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 86 GDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred CCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 6654444333778888999999999999999999876443
No 224
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=69.08 E-value=21 Score=22.60 Aligned_cols=59 Identities=27% Similarity=0.371 Sum_probs=39.2
Q ss_pred EEEEe-CCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 212 IAFIG-DGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 212 l~i~G-~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
+.+.| .+.+...+.+++...+-.+.+.++. ....+|. .+..+.+.-.|...|+|||..+
T Consensus 3 i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~--------~~THLI~---~~~~~~K~~~A~~~gi~vV~~~ 62 (63)
T PF12738_consen 3 ICFSGFSGKERSQLRKLIEALGGKYSKDLTK--------KTTHLIC---SSPEGKKYRKAKEWGIPVVSPD 62 (63)
T ss_dssp EEEEEB-TTTCCHHHHHHHCTT-EEESSSST--------T-SEEEE---ES--HHHHHHHHHCTSEEEEHH
T ss_pred EEECCCCHHHHHHHHHHHHHCCCEEeccccC--------CceEEEE---eCCCcHHHHHHHHCCCcEECCC
Confidence 44556 4555778888888887777777733 4555555 3456889999999999999753
No 225
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=69.08 E-value=33 Score=30.71 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=56.7
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEEEeC-CccHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGD-GPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE 259 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~-g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~ 259 (385)
..++.+|.- .-+-...+.++...++. +.+++- ....+..+....+.++. ...+++.++++. .|+++..+.
T Consensus 4 irvgiiG~G--~~~~~~~~~~~~~~~~~-~~~vav~d~~~~~a~~~a~~~~~~----~~~~~~~~ll~~~~iD~V~Iatp 76 (342)
T COG0673 4 IRVGIIGAG--GIAGKAHLPALAALGGG-LELVAVVDRDPERAEAFAEEFGIA----KAYTDLEELLADPDIDAVYIATP 76 (342)
T ss_pred eEEEEEccc--HHHHHHhHHHHHhCCCc-eEEEEEecCCHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEcCC
Confidence 456677743 12223456677776663 344442 23445566666666654 223567777886 478888776
Q ss_pred CCCCcHHHHHHHhcCCcEEEe
Q 016648 260 SETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~PvI~s 280 (385)
...-.-.++.|+..|++|++=
T Consensus 77 ~~~H~e~~~~AL~aGkhVl~E 97 (342)
T COG0673 77 NALHAELALAALEAGKHVLCE 97 (342)
T ss_pred ChhhHHHHHHHHhcCCEEEEc
Confidence 655566679999999999973
No 226
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.76 E-value=3.9 Score=35.33 Aligned_cols=199 Identities=13% Similarity=0.111 Sum_probs=102.8
Q ss_pred HHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeec--ccccc
Q 016648 119 KFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL--GVEKS 196 (385)
Q Consensus 119 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~--~~~k~ 196 (385)
-..-++|-.++.-.....+.+...+. +...+.|.+- +..++...+.+.. ......+-+..|+- +...+
T Consensus 173 lm~~rrc~~vf~rD~~Taq~L~~rgv----na~~vGnpmm-D~L~p~~~~~q~l-----~~g~~viaLLPGsR~pea~~n 242 (412)
T COG4370 173 LMLRRRCWAVFPRDALTAQHLANRGV----NAAYVGNPMM-DGLPPPERDPQLL-----LTGVPVIALLPGSRVPEAQTN 242 (412)
T ss_pred HHhcccceeeeccccccHHHHHhcCC----chhhccChhh-ccCCCccCCchhh-----ccCCceEEecCCCCChHHHhh
Confidence 33457788888888888888877654 3333444331 2222211111111 12223334455654 33567
Q ss_pred HHHHHHHHHhCCC-ce-EEEEe---CCccHHHH------------HHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC
Q 016648 197 LDFLKRVMDRLPE-AR-IAFIG---DGPYREEL------------EKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 259 (385)
Q Consensus 197 ~~~l~~a~~~~~~-~~-l~i~G---~g~~~~~l------------~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~ 259 (385)
+..++.++-.++. .. +++.+ ++-....+ .....+++..+ .++.+.+.+++..+|+.+-
T Consensus 243 l~~il~slcal~~~~a~vvfw~ai~~~lpl~~l~~l~e~~gWq~~ad~~~kdnc~l--~lsqqsfadiLH~adaalg--- 317 (412)
T COG4370 243 LAVILGSLCALPAMFALVVFWAAIAPELPLLLLWTLEERQGWQPLADRFGKDNCSL--WLSQQSFADILHAADAALG--- 317 (412)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhccCcCCCHHHHHHHHHhcCcchhhhhhccCceEE--EEeHHHHHHHHHHHHHHHH---
Confidence 7777775544432 11 11111 11111111 11122223222 2345788888999998652
Q ss_pred CCCCcHHHHHHHhcCCcEEEecCCCCC---ccccc--CCCCCeeEeeCCCCHHHHHHHHhH-hhcCHHHHHHHHHHHHHH
Q 016648 260 SETLGLVVLEAMSSGIPVVGVRAGGIP---DIIPE--DQDGKIGYLFNPGDLDDCLSKLEP-LLYNQELRETMGQAARQE 333 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~PvI~s~~~~~~---e~~~~--~~~~~~g~~~~~~~~~~l~~~i~~-ll~~~~~~~~~~~~a~~~ 333 (385)
.-|+..-.+...|+|||....-+-. .+.+. .--|..-.++. ...+-+..+.+ ++.|++..+.++.++++.
T Consensus 318 --mAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~--~~aq~a~~~~q~ll~dp~r~~air~nGqrR 393 (412)
T COG4370 318 --MAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR--PEAQAAAQAVQELLGDPQRLTAIRHNGQRR 393 (412)
T ss_pred --hccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC--CchhhHHHHHHHHhcChHHHHHHHhcchhh
Confidence 2367788899999999987643311 11000 00133333444 33344444444 999999989998888887
Q ss_pred HHh
Q 016648 334 MEK 336 (385)
Q Consensus 334 ~~~ 336 (385)
+-+
T Consensus 394 iGq 396 (412)
T COG4370 394 IGQ 396 (412)
T ss_pred ccC
Confidence 633
No 227
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=68.35 E-value=15 Score=31.46 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=45.9
Q ss_pred HHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 200 LKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 200 l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
+++++...+++++.-+-+.... ..... ...++ ...+++.+++..+|+++..+..+...-.+..|+..|+|+|+
T Consensus 17 i~~~l~~~~~~elvav~d~~~~-~~~~~-~~~~i-----~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al~~G~~vvi 89 (257)
T PRK00048 17 LIEAVEAAEDLELVAAVDRPGS-PLVGQ-GALGV-----AITDDLEAVLADADVLIDFTTPEATLENLEFALEHGKPLVI 89 (257)
T ss_pred HHHHHHhCCCCEEEEEEecCCc-ccccc-CCCCc-----cccCCHHHhccCCCEEEECCCHHHHHHHHHHHHHcCCCEEE
Confidence 4466666677776654432211 11111 11122 22356677777899999766655555667889999999997
Q ss_pred ecCC
Q 016648 280 VRAG 283 (385)
Q Consensus 280 s~~~ 283 (385)
...+
T Consensus 90 gttG 93 (257)
T PRK00048 90 GTTG 93 (257)
T ss_pred ECCC
Confidence 7544
No 228
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=68.29 E-value=68 Score=26.55 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=26.4
Q ss_pred HHHHHHHHh--CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 242 EELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 242 ~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
+++.++++. .|.++............-.+...|+..|.+-.+
T Consensus 136 ~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p 179 (213)
T PRK05472 136 DELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAP 179 (213)
T ss_pred HHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCc
Confidence 677888766 788777654333333445567799766655433
No 229
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=66.13 E-value=54 Score=24.67 Aligned_cols=95 Identities=20% Similarity=0.162 Sum_probs=57.1
Q ss_pred CCCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHH--cCCCeEEecccChHHHHHHHH--hCcEEE
Q 016648 180 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMF--TGMPAVFTGMLLGEELSQAYA--SGDVFV 255 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~--~~~~i~~~g~~~~~~~~~~~~--~adi~v 255 (385)
++++.+.-... .++++.+.+.++++ +.+.+.+.+....+.++... ...++.+..-. +.+.++.. .+|+++
T Consensus 22 ~d~f~v~~Lsa---~~n~~~L~~q~~~f-~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~--~~l~~~~~~~~~D~vv 95 (129)
T PF02670_consen 22 PDKFEVVALSA---GSNIEKLAEQAREF-KPKYVVIADEEAYEELKKALPSKGPGIEVLSGP--EGLEELAEEPEVDIVV 95 (129)
T ss_dssp TTTEEEEEEEE---SSTHHHHHHHHHHH-T-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH--HHHHHHHTHTT-SEEE
T ss_pred CCceEEEEEEc---CCCHHHHHHHHHHh-CCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh--HHHHHHhcCCCCCEEE
Confidence 35555554443 68899999999888 34566666655556666655 34455544433 67777766 678887
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
.....-..=...++|+..|+-+...
T Consensus 96 ~Ai~G~aGL~pt~~Ai~~gk~iaLA 120 (129)
T PF02670_consen 96 NAIVGFAGLKPTLAAIKAGKDIALA 120 (129)
T ss_dssp E--SSGGGHHHHHHHHHTTSEEEE-
T ss_pred EeCcccchHHHHHHHHHCCCeEEEe
Confidence 6544222122478899999877643
No 230
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=65.60 E-value=13 Score=29.03 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=26.8
Q ss_pred HHHHHHh-CcEEEEcCC------CCCCcHHHHHHHhcCCcEEEe
Q 016648 244 LSQAYAS-GDVFVMPSE------SETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 244 ~~~~~~~-adi~v~ps~------~e~~~~~~~Ea~a~G~PvI~s 280 (385)
+...+.. +|++|+.-. ..|+-..+.+|++.|+||++.
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
Confidence 3344444 899887643 235666799999999999976
No 231
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=65.19 E-value=1e+02 Score=27.97 Aligned_cols=78 Identities=10% Similarity=0.121 Sum_probs=55.6
Q ss_pred ccHHHHHHHHHhCC-CceEEEEeCCccHHHHHHHHc-------------CCCeEEecccChHHHHHHHHhCcEEEEcCCC
Q 016648 195 KSLDFLKRVMDRLP-EARIAFIGDGPYREELEKMFT-------------GMPAVFTGMLLGEELSQAYASGDVFVMPSES 260 (385)
Q Consensus 195 k~~~~l~~a~~~~~-~~~l~i~G~g~~~~~l~~~~~-------------~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~ 260 (385)
..+..++++++... .+.+++ -.|.....+..... ...+.+++++++++..+++-.||+-++=.
T Consensus 193 ~al~~ll~~~~~~~~pv~lLv-p~Gr~~~~v~~~l~~~~~~~g~~~~~g~L~~~~LPf~~Q~~yD~LLW~cD~NfVRG-- 269 (371)
T TIGR03837 193 AALPALLDALAQSGSPVHLLV-PEGRALAAVAAWLGDALLAAGDVHRRGALTVAVLPFVPQDDYDRLLWACDLNFVRG-- 269 (371)
T ss_pred hhHHHHHHHHHhCCCCeEEEe-cCCccHHHHHHHhCccccCCccccccCceEEEEcCCCChhhHHHHHHhChhcEeec--
Confidence 44889999998764 444444 44444444444331 12488999999999999999999965432
Q ss_pred CCCcHHHHHHHhcCCcEE
Q 016648 261 ETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI 278 (385)
--+.+-|.-+|+|.|
T Consensus 270 ---EDSFVRAqWAgkPfv 284 (371)
T TIGR03837 270 ---EDSFVRAQWAGKPFV 284 (371)
T ss_pred ---hhHHHHHHHcCCCce
Confidence 246889999999998
No 232
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.03 E-value=65 Score=27.93 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=53.5
Q ss_pred cHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHc-------------CCCeEEecccChHHHHHHHHhCcEEEEcCCCCC
Q 016648 196 SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT-------------GMPAVFTGMLLGEELSQAYASGDVFVMPSESET 262 (385)
Q Consensus 196 ~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~-------------~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~ 262 (385)
.+.-+++.+++...--+.++-.|.....+.+... ..++..++++++++..+++..||+-++-.
T Consensus 190 a~~s~ieq~r~a~~p~llL~~e~~~~~~~~~~~~~~~~a~Gdv~~~~~lrvvklPFvpqddyd~LL~lcD~n~VRG---- 265 (370)
T COG4394 190 ALPSWIEQLRKADKPILLLIPEGKTQANFAKYFDNNNNADGDVFQTAKLRVVKLPFVPQDDYDELLWLCDFNLVRG---- 265 (370)
T ss_pred chHHHHHHHHhcCCCEEEEcccchHHHHHHHHcCCCcccccchhcccceEEEEecCCcHhHHHHHHHhcccceeec----
Confidence 5777777777764333444433433334443322 12477899999999999999999976432
Q ss_pred CcHHHHHHHhcCCcEEE
Q 016648 263 LGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 263 ~~~~~~Ea~a~G~PvI~ 279 (385)
--+..-|.-+|+|.+=
T Consensus 266 -EDSFVRAq~agkPflW 281 (370)
T COG4394 266 -EDSFVRAQLAGKPFLW 281 (370)
T ss_pred -chHHHHHHHcCCCcEE
Confidence 3467889999999983
No 233
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=64.50 E-value=1.1e+02 Score=28.30 Aligned_cols=99 Identities=19% Similarity=0.220 Sum_probs=66.3
Q ss_pred CCCcEEEEEeeccccccHHHHHHHHHh-CCCceEEEEeC-CccHHHHHHHHcCCCeEEecccChH---HHHHHHHh--Cc
Q 016648 180 PDKPLIVHVGRLGVEKSLDFLKRVMDR-LPEARIAFIGD-GPYREELEKMFTGMPAVFTGMLLGE---ELSQAYAS--GD 252 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~~~~l~~a~~~-~~~~~l~i~G~-g~~~~~l~~~~~~~~i~~~g~~~~~---~~~~~~~~--ad 252 (385)
++..+.+...+.++-.-..-+++.+++ .|++.+++... ....+..++...+. ..+-++|.| -+..+++. -|
T Consensus 48 ~~p~vWiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~--v~h~YlP~D~~~~v~rFl~~~~P~ 125 (419)
T COG1519 48 EGPLVWIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDS--VIHQYLPLDLPIAVRRFLRKWRPK 125 (419)
T ss_pred CCCeEEEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCC--eEEEecCcCchHHHHHHHHhcCCC
Confidence 345667777788888878778877765 48999888763 33445555554443 333444444 34555544 46
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 253 VFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 253 i~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
++|+. ..|-+|+.+.|+-..|+|++.-|
T Consensus 126 l~Ii~-EtElWPnli~e~~~~~~p~~LvN 153 (419)
T COG1519 126 LLIIM-ETELWPNLINELKRRGIPLVLVN 153 (419)
T ss_pred EEEEE-eccccHHHHHHHHHcCCCEEEEe
Confidence 66644 36889999999999999999654
No 234
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=60.79 E-value=1e+02 Score=25.92 Aligned_cols=99 Identities=22% Similarity=0.388 Sum_probs=59.9
Q ss_pred EEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccH--HHHHHHHcCCCeEEecccChHHHHH-HHH--hCcEEEEcCC
Q 016648 185 IVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYR--EELEKMFTGMPAVFTGMLLGEELSQ-AYA--SGDVFVMPSE 259 (385)
Q Consensus 185 i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~--~~l~~~~~~~~i~~~g~~~~~~~~~-~~~--~adi~v~ps~ 259 (385)
|+=.|+++...-++++++-...-.++.+.++|.|.-- +.. ++... .+. .-|++|+.|-
T Consensus 7 iiKlGNig~s~~idl~lDErAdRedI~vrv~gsGaKm~pe~~-----------------~~~~~~~~~~~~pDf~i~isP 69 (277)
T PRK00994 7 IIKLGNIGMSPVIDLLLDERADREDIDVRVVGSGAKMGPEEV-----------------EEVVKKMLEEWKPDFVIVISP 69 (277)
T ss_pred EEEecccchHHHHHHHHHhhhcccCceEEEeccCCCCCHHHH-----------------HHHHHHHHHhhCCCEEEEECC
Confidence 5556777777777777776666678999999987521 111 11111 111 4566665444
Q ss_pred --CCCCcHHHHHHHh-cCCcEEE-ecCCCCC--cccccCCCCCeeEeeCC
Q 016648 260 --SETLGLVVLEAMS-SGIPVVG-VRAGGIP--DIIPEDQDGKIGYLFNP 303 (385)
Q Consensus 260 --~e~~~~~~~Ea~a-~G~PvI~-s~~~~~~--e~~~~~~~~~~g~~~~~ 303 (385)
.-..|.+.-|.+. .|+|+|. +|.++.. +-+ ++...|++.-.
T Consensus 70 N~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l---~~~g~GYIivk 116 (277)
T PRK00994 70 NPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAM---EEQGLGYIIVK 116 (277)
T ss_pred CCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHH---HhcCCcEEEEe
Confidence 4456777888876 5789875 4555442 445 55667776553
No 235
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=59.15 E-value=70 Score=26.44 Aligned_cols=74 Identities=16% Similarity=0.255 Sum_probs=45.9
Q ss_pred HHHHHHHH--hCcEEEEc-CCCCCCcHHHHHHHh-----cCCcEEE--ecCCCCCcccccCCCCCeeEeeCCCCHHHHHH
Q 016648 242 EELSQAYA--SGDVFVMP-SESETLGLVVLEAMS-----SGIPVVG--VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLS 311 (385)
Q Consensus 242 ~~~~~~~~--~adi~v~p-s~~e~~~~~~~Ea~a-----~G~PvI~--s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~ 311 (385)
++...++. +.|+.++- ...++-|+.++..+. +.+-+|+ ++...+.+.+ ..|...++..|-..+-+.+
T Consensus 36 ~ea~~~i~~~~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~al---r~Gv~DYLiKPf~~eRl~~ 112 (224)
T COG4565 36 EEAKMIIEEFKPDLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEAL---RYGVVDYLIKPFTFERLQQ 112 (224)
T ss_pred HHHHHHHHhhCCCEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHH---hcCchhheecceeHHHHHH
Confidence 44455555 45666553 335666777776666 3333442 2333455566 6677778888888888888
Q ss_pred HHhHhhc
Q 016648 312 KLEPLLY 318 (385)
Q Consensus 312 ~i~~ll~ 318 (385)
++.+...
T Consensus 113 aL~~y~~ 119 (224)
T COG4565 113 ALTRYRQ 119 (224)
T ss_pred HHHHHHH
Confidence 8877643
No 236
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=58.50 E-value=1e+02 Score=25.25 Aligned_cols=102 Identities=20% Similarity=0.329 Sum_probs=60.9
Q ss_pred EEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCcc--HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcC--C
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS--E 259 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps--~ 259 (385)
-|+-.|+++...-++.+++--..-+++.+.++|.|.. .+.++... .++.+-+ +.|++++-| -
T Consensus 6 g~ik~GniGts~v~dlllDErAdRedi~vrVvgsgaKM~Pe~veaav-------------~~~~e~~-~pDfvi~isPNp 71 (277)
T COG1927 6 GFIKCGNIGTSPVVDLLLDERADREDIEVRVVGSGAKMDPECVEAAV-------------TEMLEEF-NPDFVIYISPNP 71 (277)
T ss_pred EEEEecccchHHHHHHHHHhhcccCCceEEEeccccccChHHHHHHH-------------HHHHHhc-CCCEEEEeCCCC
Confidence 3556677777777777777666668999999997642 12122111 1222211 356655544 4
Q ss_pred CCCCcHHHHHHHh-cCCcEEE-ecCCCC--CcccccCCCCCeeEeeC
Q 016648 260 SETLGLVVLEAMS-SGIPVVG-VRAGGI--PDIIPEDQDGKIGYLFN 302 (385)
Q Consensus 260 ~e~~~~~~~Ea~a-~G~PvI~-s~~~~~--~e~~~~~~~~~~g~~~~ 302 (385)
.-..|.+.-|.++ +|+|+|. +|.++. .+.+ ++...|++.-
T Consensus 72 aaPGP~kARE~l~~s~~PaiiigDaPg~~vkdel---eeqGlGYIiv 115 (277)
T COG1927 72 AAPGPKKAREILSDSDVPAIIIGDAPGLKVKDEL---EEQGLGYIIV 115 (277)
T ss_pred CCCCchHHHHHHhhcCCCEEEecCCccchhHHHH---HhcCCeEEEe
Confidence 4566788889887 6899874 455543 3445 4555666554
No 237
>TIGR02536 eut_hyp ethanolamine utilization protein. This family of proteins is found in operons for the polyhedral organelle-based degradation of ethanolamine. This family is not found in proteobacterial species which otherwise have the same suite of genes in the eut operon. Proteobacteria have two genes that are not found in non-proteobacteria which may complement this genes function, a phosphotransacetylase (pfam01515) and the EutJ protein (TIGR02529) of unknown function.
Probab=58.38 E-value=58 Score=26.84 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=39.1
Q ss_pred eEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCC--------CCCc-----HHHHHHHhcCCcE
Q 016648 211 RIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES--------ETLG-----LVVLEAMSSGIPV 277 (385)
Q Consensus 211 ~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~--------e~~~-----~~~~Ea~a~G~Pv 277 (385)
+-++++++.....-+++..+.++..... .-..||++++|... -|.+ ..+++++..|+||
T Consensus 22 k~i~~~~~~~~~i~e~~~~~~~i~~~~~--------~~~~~dillv~~Lt~n~lskIAlGi~d~~~~~~I~~~LL~GK~V 93 (207)
T TIGR02536 22 KYIVALGDSKHAIPEEMLKEFDVSWVTS--------EQKLADILLVSRLSIKELNNISHGQETNEKEKFIIAFLLEGKPI 93 (207)
T ss_pred ceEEEecCCchhhHHHHHhhcceeecch--------hhhcCCEEEEccCCHHHHHHHHccCCCCHHHHHHHHHHHCCCeE
Confidence 3333333333444455555555543332 45688998888542 1222 5689999999999
Q ss_pred EEecCC
Q 016648 278 VGVRAG 283 (385)
Q Consensus 278 I~s~~~ 283 (385)
++...+
T Consensus 94 ~v~~eg 99 (207)
T TIGR02536 94 YILKPG 99 (207)
T ss_pred EEEecc
Confidence 987644
No 238
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=57.55 E-value=18 Score=25.86 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=40.4
Q ss_pred CceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHH-HHHhcCCcEEEecCCCCCc
Q 016648 209 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIPVVGVRAGGIPD 287 (385)
Q Consensus 209 ~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~-Ea~a~G~PvI~s~~~~~~e 287 (385)
+.++.+++... +..+ ..+.+... ++...+..+++++..+..+.....+. ++-+.|+|+-+.|.+...+
T Consensus 30 gA~v~vis~~~--~~~~-----~~i~~~~~----~~~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~~~d 98 (103)
T PF13241_consen 30 GAKVTVISPEI--EFSE-----GLIQLIRR----EFEEDLDGADLVFAATDDPELNEAIYADARARGILVNVVDDPELCD 98 (103)
T ss_dssp TBEEEEEESSE--HHHH-----TSCEEEES----S-GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CCCCS
T ss_pred CCEEEEECCch--hhhh-----hHHHHHhh----hHHHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcCCCe
Confidence 57888888654 2222 22333221 22344778898887766555555554 4445899999999887776
Q ss_pred cc
Q 016648 288 II 289 (385)
Q Consensus 288 ~~ 289 (385)
++
T Consensus 99 F~ 100 (103)
T PF13241_consen 99 FI 100 (103)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 239
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=56.64 E-value=38 Score=28.36 Aligned_cols=148 Identities=14% Similarity=0.212 Sum_probs=63.0
Q ss_pred EEEeeccccccHHHHHHHHHhCCCceEEEEeCCcc--HHHHHHHHcCCCeEEecccChHHHH-HHHHhCcEEEEcCCCC-
Q 016648 186 VHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELS-QAYASGDVFVMPSESE- 261 (385)
Q Consensus 186 ~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~i~~~g~~~~~~~~-~~~~~adi~v~ps~~e- 261 (385)
+=.|++....-++++++-...-.++.+.++|.|.- .+.+++.. .++. ++ .-|++|+.|-..
T Consensus 7 iKlGNig~s~~idl~LDErAdRedI~vrv~gsGaKm~pe~~e~~~-------------~~~~~~~--~pdf~I~isPN~~ 71 (276)
T PF01993_consen 7 IKLGNIGTSVVIDLLLDERADREDIDVRVVGSGAKMGPEDVEEVV-------------TKMLKEW--DPDFVIVISPNAA 71 (276)
T ss_dssp EEES--HHHHHTTGGGSTTS--SSEEEEEEEEET--SHHHHHHHH-------------HHHHHHH----SEEEEE-S-TT
T ss_pred EEecccchHHHHHHHHHhhhccCCceEEEeccCCCCCHHHHHHHH-------------HHHHHhh--CCCEEEEECCCCC
Confidence 33455444333344433323335788888887652 12222211 1111 22 567766655443
Q ss_pred -CCcHHHHHHH-hcCCcEEE-ecCCCC--CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHh
Q 016648 262 -TLGLVVLEAM-SSGIPVVG-VRAGGI--PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 336 (385)
Q Consensus 262 -~~~~~~~Ea~-a~G~PvI~-s~~~~~--~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~ 336 (385)
..|.+.-|.+ +.|+|+|. +|.++. .+-+ ++...|++.-..| .+.-+=++.| ||.+....-....+.+.-
T Consensus 72 ~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l---~~~g~GYIivk~D--pMIGArREFL-DP~EMa~fNaD~~kVLa~ 145 (276)
T PF01993_consen 72 APGPTKAREMLSAKGIPCIVISDAPTKKAKDAL---EEEGFGYIIVKAD--PMIGARREFL-DPVEMALFNADVLKVLAI 145 (276)
T ss_dssp SHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHH---HHTT-EEEEETTS--------TTT---HHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHH---HhcCCcEEEEecC--cccccccccc-CHHHHHHhhhhHHHHHHh
Confidence 4466788888 57999874 555543 3445 5666787766433 4555545544 454433333333333333
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 016648 337 YDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 337 ~s~~~~~~~~~~~iy~~~ 354 (385)
-..-+.++.-++.+.+++
T Consensus 146 tGa~RlvQ~elD~vi~~v 163 (276)
T PF01993_consen 146 TGAFRLVQEELDKVIDQV 163 (276)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 333333333334444444
No 240
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=56.55 E-value=64 Score=30.68 Aligned_cols=121 Identities=20% Similarity=0.203 Sum_probs=70.2
Q ss_pred EecccChHHHHHHHHhCcEEE-EcCC-----CCCCcHHHHHHHhcC-CcEEEecCC--CCCcccccCCCCCeeEeeCCCC
Q 016648 235 FTGMLLGEELSQAYASGDVFV-MPSE-----SETLGLVVLEAMSSG-IPVVGVRAG--GIPDIIPEDQDGKIGYLFNPGD 305 (385)
Q Consensus 235 ~~g~~~~~~~~~~~~~adi~v-~ps~-----~e~~~~~~~Ea~a~G-~PvI~s~~~--~~~e~~~~~~~~~~g~~~~~~~ 305 (385)
+.|.- ++-.++++.+.+.+ +|.. .+++-..++||+..| +|||.++.- ...+.+ +-..+.+..+-.-
T Consensus 403 lcg~~--~~RrqLlk~STF~lilpp~d~rv~S~~~~~r~~eaL~~GavPviLg~~~~LPyqd~i---dWrraal~lPkaR 477 (907)
T KOG2264|consen 403 LCGER--ERRRQLLKSSTFCLILPPGDPRVISEMFFQRFLEALQLGAVPVILGNSQLLPYQDLI---DWRRAALRLPKAR 477 (907)
T ss_pred hccch--HHHHHHhccceeEEEecCCCcchhhHHHHHHHHHHHhcCCeeEEeccccccchHHHH---HHHHHhhhCCccc
Confidence 45543 67778898888754 4422 345666799999999 688877532 445666 4455555555433
Q ss_pred HHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 016648 306 LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWRKKRAQLLRP 368 (385)
Q Consensus 306 ~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~~~~~~~~~~~~~ 368 (385)
..+. ..+.+.++|.+. -+|++.+|-. |+.....- ..+.+.+++.-+-+-+...+|
T Consensus 478 ~tE~-HFllrs~~dsDl-l~mRRqGRl~-----wEtYls~~-~~~~~tvlA~lR~rlqIP~rp 532 (907)
T KOG2264|consen 478 LTEA-HFLLRSFEDSDL-LEMRRQGRLF-----WETYLSDR-HLLARTVLAALRYRLQIPTRP 532 (907)
T ss_pred cchH-HHHHHhcchhhH-HHHHhhhhhh-----HHHHhhHH-HHHHHHHHHHHHHhhCCCCcc
Confidence 3333 234444555554 4566666544 55444444 356777776555444444443
No 241
>PLN02929 NADH kinase
Probab=56.43 E-value=26 Score=30.72 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=42.9
Q ss_pred HHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCC-----Cccccc-CCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 245 SQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI-----PDIIPE-DQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 245 ~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~-----~e~~~~-~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
......+|++|.--- +|.=+...-.+..++||+.-+.|.. .++.++ +..+..|+++.. +++++.+.+.++++
T Consensus 59 ~~~~~~~Dlvi~lGG-DGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~-~~~~~~~~L~~il~ 136 (301)
T PLN02929 59 SQPIRDVDLVVAVGG-DGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAA-TAEDFEQVLDDVLF 136 (301)
T ss_pred ccccCCCCEEEEECC-cHHHHHHHHHcCCCCcEEEEECCCcccccccccccccccccCccccccC-CHHHHHHHHHHHHc
Confidence 344567888875432 2222222222455799999887631 111100 023467888876 68899999999887
Q ss_pred C
Q 016648 319 N 319 (385)
Q Consensus 319 ~ 319 (385)
.
T Consensus 137 g 137 (301)
T PLN02929 137 G 137 (301)
T ss_pred C
Confidence 5
No 242
>PRK10637 cysG siroheme synthase; Provisional
Probab=55.94 E-value=1.8e+02 Score=27.44 Aligned_cols=122 Identities=13% Similarity=0.029 Sum_probs=66.7
Q ss_pred CceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHH-HHhcCCcEEEecCCCCCc
Q 016648 209 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLE-AMSSGIPVVGVRAGGIPD 287 (385)
Q Consensus 209 ~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~E-a~a~G~PvI~s~~~~~~e 287 (385)
+.++.++... ..+++..+....++.+...-- ....+..+++++..+..+.....+.+ |-..|++|-+.|.+...+
T Consensus 35 ga~v~visp~-~~~~~~~l~~~~~i~~~~~~~---~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~ 110 (457)
T PRK10637 35 GARLTVNALA-FIPQFTAWADAGMLTLVEGPF---DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAAS 110 (457)
T ss_pred CCEEEEEcCC-CCHHHHHHHhCCCEEEEeCCC---ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCe
Confidence 5677777643 335666666666666554321 23446788888777766666665554 447799998888776555
Q ss_pred ccccC--CCCCeeEeeC-CCC----HHHHHHHHhHhhc-CHHHHHHHHHHHHHHH
Q 016648 288 IIPED--QDGKIGYLFN-PGD----LDDCLSKLEPLLY-NQELRETMGQAARQEM 334 (385)
Q Consensus 288 ~~~~~--~~~~~g~~~~-~~~----~~~l~~~i~~ll~-~~~~~~~~~~~a~~~~ 334 (385)
++-+. +.+.--+-+. .+. ...+.+.|+.++. +-+.+.+.....|+.+
T Consensus 111 f~~pa~~~~g~l~iaisT~G~sP~~a~~lr~~ie~~~~~~~~~~~~~~~~~R~~~ 165 (457)
T PRK10637 111 FIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPQHLGQVAKYAGQLRGRV 165 (457)
T ss_pred EEEeeEEecCCEEEEEECCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 54220 2222222221 222 3455666666663 2233334444555555
No 243
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=55.89 E-value=1.4e+02 Score=26.08 Aligned_cols=145 Identities=18% Similarity=0.191 Sum_probs=64.0
Q ss_pred HHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCC-CCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHH
Q 016648 121 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDF 199 (385)
Q Consensus 121 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~ 199 (385)
.-...|.|++........+.+... . .+-++..|+ |+........ ...+++.+-+.. ....+..
T Consensus 56 ~~~~~DlIi~~gt~aa~~~~~~~~--~-~iPVVf~~V~dp~~~~l~~~---------~~~~~~nvTGv~----~~~~~~~ 119 (294)
T PF04392_consen 56 KAQKPDLIIAIGTPAAQALAKHLK--D-DIPVVFCGVSDPVGAGLVDS---------LDRPGKNVTGVS----ERPPIEK 119 (294)
T ss_dssp CCTS-SEEEEESHHHHHHHHHH-S--S--S-EEEECES-TTTTTS-S----------SSS--SSEEEEE----E---HHH
T ss_pred hcCCCCEEEEeCcHHHHHHHHhcC--C-CcEEEEEeccChhhhhcccc---------ccCCCCCEEEEE----CCcCHHH
Confidence 345899999999888888777653 2 155666666 3321111100 011122222222 2234445
Q ss_pred HHHHHHhC-CCce-E-EEEeCCc-----cHHHHHHHHcCCCeEE--ecccChHHHHHHHH----hCcEEEEcCC---CCC
Q 016648 200 LKRVMDRL-PEAR-I-AFIGDGP-----YREELEKMFTGMPAVF--TGMLLGEELSQAYA----SGDVFVMPSE---SET 262 (385)
Q Consensus 200 l~~a~~~~-~~~~-l-~i~G~g~-----~~~~l~~~~~~~~i~~--~g~~~~~~~~~~~~----~adi~v~ps~---~e~ 262 (385)
-++.++++ |+.+ + +++.... ..+.+++.+...++.+ ..--+.+++...+. ..|+++++.. ...
T Consensus 120 ~l~l~~~l~P~~k~igvl~~~~~~~~~~~~~~~~~~a~~~g~~l~~~~v~~~~~~~~~~~~l~~~~da~~~~~~~~~~~~ 199 (294)
T PF04392_consen 120 QLELIKKLFPDAKRIGVLYDPSEPNSVAQIEQLRKAAKKLGIELVEIPVPSSEDLEQALEALAEKVDALYLLPDNLVDSN 199 (294)
T ss_dssp HHHHHHHHSTT--EEEEEEETT-HHHHHHHHHHHHHHHHTT-EEEEEEESSGGGHHHHHHHHCTT-SEEEE-S-HHHHHT
T ss_pred HHHHHHHhCCCCCEEEEEecCCCccHHHHHHHHHHHHHHcCCEEEEEecCcHhHHHHHHHHhhccCCEEEEECCcchHhH
Confidence 55555554 6543 4 2344332 2334455444455432 23333355554444 5688777643 123
Q ss_pred CcHHHHHHHhcCCcEEEec
Q 016648 263 LGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 263 ~~~~~~Ea~a~G~PvI~s~ 281 (385)
+...+..+...++|++++.
T Consensus 200 ~~~i~~~~~~~~iPv~~~~ 218 (294)
T PF04392_consen 200 FEAILQLANEAKIPVFGSS 218 (294)
T ss_dssp HHHHHHHCCCTT--EEESS
T ss_pred HHHHHHHHHhcCCCEEECC
Confidence 3334556677899999864
No 244
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=55.69 E-value=47 Score=28.37 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=52.3
Q ss_pred HHHHHHHhCcEEEEcC-CCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc--C
Q 016648 243 ELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY--N 319 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps-~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~--~ 319 (385)
.-..-++.||++|.-. ..|++-.++.+........+..-..++...- .+.+.-+..++.+...+++.|.+.+. +
T Consensus 40 ~d~~~l~~Adlvv~~G~~~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~---~~~npH~Wldp~~~~~~~~~Ia~~L~~~~ 116 (256)
T PF01297_consen 40 SDIKKLQKADLVVYNGLGLEPWLEKLLESSQNPKVKVIDLSEGIDLDH---HGHNPHVWLDPENAKKMAEAIADALSELD 116 (256)
T ss_dssp HHHHHHHHSSEEEES-TTTSCCHHHHHHTTTTTTTEEEETTTTS-GST---TCBESTGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCEEEEeCCccchhhhhhhhcccccccceEEeeccccccc---CCCCCchHHHHHHHHHHHHHHHHHHHHhC
Confidence 3345578999999865 3678877777555555555544334432211 11223355666677777777777665 6
Q ss_pred HHHHHHHHHHHHHHHH
Q 016648 320 QELRETMGQAARQEME 335 (385)
Q Consensus 320 ~~~~~~~~~~a~~~~~ 335 (385)
|+....+.+++.++.+
T Consensus 117 P~~~~~y~~N~~~~~~ 132 (256)
T PF01297_consen 117 PANKDYYEKNAEKYLK 132 (256)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHH
Confidence 6666666666655543
No 245
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=55.20 E-value=1.2e+02 Score=25.07 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=33.5
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
|+++.+|.. + +++-.-.-.|++..+.++..--... ..+...+-+++++--+|+.+++--++.
T Consensus 168 shlv~Vppg----~--~L~d~l~ssPii~ge~g~a~~~~~a-~g~~f~fgvdp~~DPELAlALRlSMEE 229 (259)
T KOG2884|consen 168 SHLVSVPPG----P--LLSDALLSSPIIQGEDGGAAAGLGA-NGMDFEFGVDPEDDPELALALRLSMEE 229 (259)
T ss_pred ceEEEeCCC----c--cHHHHhhcCceeccCcccccccccc-cccccccCCCcccCHHHHHHHHhhHHH
Confidence 556666642 2 5555566789998764433322200 111223344566666788888765543
No 246
>PRK07714 hypothetical protein; Provisional
Probab=55.16 E-value=68 Score=22.79 Aligned_cols=75 Identities=8% Similarity=0.120 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHhCCCceEEEEeCCc---cHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHH
Q 016648 195 KSLDFLKRVMDRLPEARIAFIGDGP---YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 270 (385)
Q Consensus 195 k~~~~l~~a~~~~~~~~l~i~G~g~---~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea 270 (385)
.|.+...++++. .+++++|+...- ..+.+...+...+|.+....+.+|+-..+......+..-...++.-.+++.
T Consensus 21 ~G~~~v~~al~~-g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~~sk~eLG~a~Gk~~~~~vai~d~g~a~~l~~~ 98 (100)
T PRK07714 21 SGEELVLKEVRS-GKAKLVLLSEDASVNTTKKITDKCTYYNVPMRKVENRQQLGHAIGKDERVVVAVLDEGFAKKLRSM 98 (100)
T ss_pred ecHHHHHHHHHh-CCceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCcceEEEEeCchhHHHHHHH
Confidence 567788888877 357777777432 345555555555665555556688888877654444333455666555553
No 247
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=54.63 E-value=51 Score=20.64 Aligned_cols=62 Identities=21% Similarity=0.333 Sum_probs=40.3
Q ss_pred ceEEEEeC--CccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 210 ARIAFIGD--GPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 210 ~~l~i~G~--g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
..+.+.|. +.....+.+++...+-.+...++ ..++.+|.+.... .....++...|+|+|..+
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~--------~~~thvI~~~~~~--~~~~~~~~~~~~~iV~~~ 65 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGKVTSSVS--------KKTTHVIVGSDAG--PKKLLKAIKLGIPIVTPE 65 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCEEecccc--------CCceEEEECCCCC--chHHHHHHHcCCeEecHH
Confidence 46777785 47778888887766555555442 4566666664422 222778889999998643
No 248
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=54.14 E-value=74 Score=29.80 Aligned_cols=88 Identities=15% Similarity=0.100 Sum_probs=51.1
Q ss_pred eeccccccHHHHHHHHHhCCCceEEEEeC-----CccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEE-EEcCCCCC
Q 016648 189 GRLGVEKSLDFLKRVMDRLPEARIAFIGD-----GPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVF-VMPSESET 262 (385)
Q Consensus 189 G~~~~~k~~~~l~~a~~~~~~~~l~i~G~-----g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~-v~ps~~e~ 262 (385)
|.-...+-++.+-.|+.+.|...+.+-.. |.....+.+......++++..= =+-..+++..|=+ ..+|.
T Consensus 161 g~a~~~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~~~r~~ll~ed--fnpisll~~~dkvy~~ts~--- 235 (671)
T COG3563 161 GGADASTFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQQHRVHLLAED--FNPISLLQNVDKVYCVTSQ--- 235 (671)
T ss_pred CCcchhHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhccCceEEEeccc--CChHHHHHhcceeEEeecc---
Confidence 33444455677778888888776665431 2223334443333345554321 2345667777754 43432
Q ss_pred CcHHHHHHHhcCCcEEEecCCC
Q 016648 263 LGLVVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 263 ~~~~~~Ea~a~G~PvI~s~~~~ 284 (385)
.-+||+.||+|+++...+.
T Consensus 236 ---mgfeall~~~~~~~fg~p~ 254 (671)
T COG3563 236 ---MGFEALLCGKPLTTFGLPW 254 (671)
T ss_pred ---ccHHHHhcCCceeeecchh
Confidence 2369999999999876543
No 249
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=54.02 E-value=55 Score=26.16 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=26.6
Q ss_pred HHHHHHHHhCcEEEE--cCCC---CCCcHHHHHHHhcCCcEEEe
Q 016648 242 EELSQAYASGDVFVM--PSES---ETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 242 ~~~~~~~~~adi~v~--ps~~---e~~~~~~~Ea~a~G~PvI~s 280 (385)
.++.++++.||++++ |... .-++-..++.|--|.-+|-+
T Consensus 83 ~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~ 126 (178)
T PF02826_consen 83 VSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNV 126 (178)
T ss_dssp SSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEES
T ss_pred eehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEec
Confidence 567788999999876 4333 33577788888878766643
No 250
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=53.67 E-value=37 Score=29.29 Aligned_cols=80 Identities=13% Similarity=0.032 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCceEEEEeCCccHH----HHHHHHcC--CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHh
Q 016648 199 FLKRVMDRLPEARIAFIGDGPYRE----ELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 272 (385)
Q Consensus 199 ~l~~a~~~~~~~~l~i~G~g~~~~----~l~~~~~~--~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a 272 (385)
.+++++...++++++-+-+....+ ........ ..+.+. +++.++...+|+++-.+..+...-.+..++.
T Consensus 16 ~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~-----~d~~~l~~~~DvVIdfT~p~~~~~~~~~al~ 90 (266)
T TIGR00036 16 ELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVT-----DDLEAVETDPDVLIDFTTPEGVLNHLKFALE 90 (266)
T ss_pred HHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceee-----CCHHHhcCCCCEEEECCChHHHHHHHHHHHH
Confidence 556666666777776544311111 11222111 123222 2333333568999988766666677889999
Q ss_pred cCCcEEEecCC
Q 016648 273 SGIPVVGVRAG 283 (385)
Q Consensus 273 ~G~PvI~s~~~ 283 (385)
.|+|+|+...+
T Consensus 91 ~g~~vVigttg 101 (266)
T TIGR00036 91 HGVRLVVGTTG 101 (266)
T ss_pred CCCCEEEECCC
Confidence 99999976554
No 251
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=52.97 E-value=1.3e+02 Score=25.58 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=27.7
Q ss_pred ecccChHHHHHHHH-----hCcEEEEcCC-CCCCcH-HHHHHHhcCCcEEEecCCC
Q 016648 236 TGMLLGEELSQAYA-----SGDVFVMPSE-SETLGL-VVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 236 ~g~~~~~~~~~~~~-----~adi~v~ps~-~e~~~~-~~~Ea~a~G~PvI~s~~~~ 284 (385)
.+.++.+.+.+... .+|.++.+-. .-+... .-+|.. .|+|||+|+...
T Consensus 162 ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi~~lE~~-lGkPVlsSNqat 216 (239)
T TIGR02990 162 MARISPDCIVEAALAAFDPDADALFLSCTALRAATCAQRIEQA-IGKPVVTSNQAT 216 (239)
T ss_pred eeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHHHHHHHH-HCCCEEEHHHHH
Confidence 55577788777776 3566554422 112111 123433 799999998543
No 252
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=52.68 E-value=1.1e+02 Score=27.27 Aligned_cols=89 Identities=12% Similarity=0.028 Sum_probs=50.4
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCC
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESET 262 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~ 262 (385)
..+..+|.-.-.+ ...+++.+.++++++-+-+....+.+.. ... ... ..+...++...|++++.+-...
T Consensus 4 IRVgIVG~GnIGr---~~a~al~~~pd~ELVgV~dr~~~~~~~~---~~~--v~~---~~d~~e~l~~iDVViIctPs~t 72 (324)
T TIGR01921 4 IRAAIVGYGNLGR---SVEKAIQQQPDMELVGVFSRRGAETLDT---ETP--VYA---VADDEKHLDDVDVLILCMGSAT 72 (324)
T ss_pred cEEEEEeecHHHH---HHHHHHHhCCCcEEEEEEcCCcHHHHhh---cCC--ccc---cCCHHHhccCCCEEEEcCCCcc
Confidence 3455555422222 3456777778887765544432222221 111 111 1344455688999987544333
Q ss_pred CcHHHHHHHhcCCcEEEecC
Q 016648 263 LGLVVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 263 ~~~~~~Ea~a~G~PvI~s~~ 282 (385)
-.-.+.++++.|+.||++..
T Consensus 73 h~~~~~~~L~aG~NVV~s~~ 92 (324)
T TIGR01921 73 DIPEQAPYFAQFANTVDSFD 92 (324)
T ss_pred CHHHHHHHHHcCCCEEECCC
Confidence 35667789999999999853
No 253
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=52.54 E-value=62 Score=25.67 Aligned_cols=61 Identities=8% Similarity=0.193 Sum_probs=39.9
Q ss_pred HHHHHHHhC----CCceEEEEeCCcc-HHHHHHHHcCC--CeEEecccChHHHHHHHHhCcEEEEcCCC
Q 016648 199 FLKRVMDRL----PEARIAFIGDGPY-REELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSES 260 (385)
Q Consensus 199 ~l~~a~~~~----~~~~l~i~G~g~~-~~~l~~~~~~~--~i~~~g~~~~~~~~~~~~~adi~v~ps~~ 260 (385)
..++++++. .+-+++|+|.|.. ...+.+...+. ++.+...- .+++.+.+++||++|..+..
T Consensus 30 a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~-~~~l~~~l~~aDiVIsat~~ 97 (168)
T cd01080 30 GILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK-TKNLKEHTKQADIVIVAVGK 97 (168)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC-chhHHHHHhhCCEEEEcCCC
Confidence 444555544 5689999998864 33344444333 35555543 37899999999999987653
No 254
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=52.44 E-value=77 Score=27.19 Aligned_cols=74 Identities=15% Similarity=0.055 Sum_probs=49.3
Q ss_pred eEEecccChHHHHHHHHhCcEEEEcCC---C-CCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHH
Q 016648 233 AVFTGMLLGEELSQAYASGDVFVMPSE---S-ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDD 308 (385)
Q Consensus 233 i~~~g~~~~~~~~~~~~~adi~v~ps~---~-e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~ 308 (385)
|-+.|+.+.+.=..++++.++-++-+. . .|+.-|+--|..+|+|||.-+-+..+.-. ..+ .+.++
T Consensus 178 ia~~gPfs~e~n~al~~~~~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vivI~RP~~~~~~---------~~~--~~~~e 246 (256)
T TIGR00715 178 IAMRGPFSEELEKALLREYRIDAVVTKASGEQGGELEKVKAAEALGINVIRIARPQTIPGV---------AIF--DDISQ 246 (256)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCCccchHHHHHHHHHcCCcEEEEeCCCCCCCC---------ccC--CCHHH
Confidence 557788877776788887666333333 2 25677899999999999988766532110 122 38888
Q ss_pred HHHHHhHhh
Q 016648 309 CLSKLEPLL 317 (385)
Q Consensus 309 l~~~i~~ll 317 (385)
+.+.+.+++
T Consensus 247 l~~~l~~~~ 255 (256)
T TIGR00715 247 LNQFVARLL 255 (256)
T ss_pred HHHHHHHhc
Confidence 888777653
No 255
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=52.36 E-value=73 Score=28.75 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=54.3
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCC-CceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEE--EEc
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVF--VMP 257 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~-~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~--v~p 257 (385)
++..++.+|. .. | ...++++.+.+ +++++-+.+. ..+..++.+++.++. .+ .++.+++...|+. ..|
T Consensus 2 ~~~rVgViG~-~~--G-~~h~~al~~~~~~~eLvaV~d~-~~erA~~~A~~~gi~--~y---~~~eell~d~Di~~V~ip 71 (343)
T TIGR01761 2 DVQSVVVCGT-RF--G-QFYLAAFAAAPERFELAGILAQ-GSERSRALAHRLGVP--LY---CEVEELPDDIDIACVVVR 71 (343)
T ss_pred CCcEEEEEeH-HH--H-HHHHHHHHhCCCCcEEEEEEcC-CHHHHHHHHHHhCCC--cc---CCHHHHhcCCCEEEEEeC
Confidence 3466888886 32 3 35778888887 6777655543 344555666655553 22 4455556666654 444
Q ss_pred CC--CCCCcHHHHHHHhcCCcEEEe
Q 016648 258 SE--SETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 258 s~--~e~~~~~~~Ea~a~G~PvI~s 280 (385)
+. ...-.-...+|+..|+.|++-
T Consensus 72 t~~P~~~H~e~a~~aL~aGkHVL~E 96 (343)
T TIGR01761 72 SAIVGGQGSALARALLARGIHVLQE 96 (343)
T ss_pred CCCCCccHHHHHHHHHhCCCeEEEc
Confidence 32 122244577899999999975
No 256
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=51.80 E-value=1.3e+02 Score=24.57 Aligned_cols=108 Identities=11% Similarity=0.162 Sum_probs=64.2
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCC-CeEEeccc-ChHHHHHHHH--hCcEEEEcCCCCC----CcHHHHHHHh---cCCc
Q 016648 209 EARIAFIGDGPY-REELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSESET----LGLVVLEAMS---SGIP 276 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~-~i~~~g~~-~~~~~~~~~~--~adi~v~ps~~e~----~~~~~~Ea~a---~G~P 276 (385)
+++++++.+.+. ...+....... .+...+.. +.++....+. ..|++++-....+ .|..+++.+. .++|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~~~ 82 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLS 82 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhCCCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCCCc
Confidence 356677775543 33455555433 33334333 2355555554 3688887543222 4666666654 3467
Q ss_pred EEEe-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 277 VVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 277 vI~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
+|.- ..... .+.+ +.|..|++..+.+.+++.+++..++..
T Consensus 83 iIvls~~~~~~~~~~a~---~~Ga~~yl~K~~~~~~l~~ai~~v~~g 126 (216)
T PRK10840 83 IIVLTMNNNPAILSAVL---DLDIEGIVLKQGAPTDLPKALAALQKG 126 (216)
T ss_pred EEEEEecCCHHHHHHHH---HCCCeEEEECCCCHHHHHHHHHHHHCC
Confidence 7643 33322 2334 678899999999999999999988763
No 257
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=51.24 E-value=1.2e+02 Score=23.99 Aligned_cols=105 Identities=14% Similarity=0.233 Sum_probs=62.0
Q ss_pred eEEEEeCCcc-HHHHHHHHcCC-CeEEeccc-ChHHHHHHHH--hCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEec-CC
Q 016648 211 RIAFIGDGPY-REELEKMFTGM-PAVFTGML-LGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVR-AG 283 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~-~i~~~g~~-~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~-~~ 283 (385)
++.++.+.+. ...+....... .....+.. +.++....+. ..|++++-.. .+.-+..+++.+..+.|+|... ..
T Consensus 3 ~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~vi~~s~~~ 82 (196)
T PRK10360 3 TVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHD 82 (196)
T ss_pred EEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHccCCCEEEEECCC
Confidence 4566665432 33444444322 33332222 2244444443 3578777543 3344667777777778887543 22
Q ss_pred CCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 284 GIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 284 ~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
... +.+ ..|..+++..+.+.+++.+++..++.
T Consensus 83 ~~~~~~~~~---~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 83 SPALVEQAL---NAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 222 234 56778899999999999999998875
No 258
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=50.80 E-value=52 Score=35.48 Aligned_cols=78 Identities=17% Similarity=0.357 Sum_probs=52.1
Q ss_pred cccHHHHHHHHHhCCCceEEEEeCC--ccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHH
Q 016648 194 EKSLDFLKRVMDRLPEARIAFIGDG--PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 271 (385)
Q Consensus 194 ~k~~~~l~~a~~~~~~~~l~i~G~g--~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 271 (385)
.-|++++++.+++. ++.-+..|.| .+.+++-++....+|.|+|+- ...|.. ..+-.+.+++ |.
T Consensus 123 yANVdlIvdiAe~~-~VdAVWaGWGHASENP~LPe~L~~~~IiFiGPP-~~aM~s------------LGDKI~STIv-AQ 187 (2196)
T KOG0368|consen 123 YANVDLIVDIAERT-DVDAVWAGWGHASENPELPERLSANGIIFIGPP-ASAMRA------------LGDKIASTII-AQ 187 (2196)
T ss_pred cccHHHHHHHHHhc-ccceEeecccccccCcchHHHHHhcCcEEECCc-hHHHHH------------hcchHHHHHH-HH
Confidence 46799999999886 5777888865 345566667777778888875 222211 1223344444 99
Q ss_pred hcCCcEEEecCCCCC
Q 016648 272 SSGIPVVGVRAGGIP 286 (385)
Q Consensus 272 a~G~PvI~s~~~~~~ 286 (385)
++|+|.+.....++.
T Consensus 188 sa~vPtlpWSGS~v~ 202 (2196)
T KOG0368|consen 188 SAGVPTLPWSGSGVK 202 (2196)
T ss_pred hcCCCcccccCCcce
Confidence 999999976655544
No 259
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=50.30 E-value=87 Score=26.52 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=25.0
Q ss_pred CCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecC
Q 016648 64 PDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 97 (385)
Q Consensus 64 pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 97 (385)
||++++.+|..-.. +..-++..|+|+|-.+...
T Consensus 157 Pd~l~ViDp~~e~i-Av~EA~klgIPVvAlvDTn 189 (252)
T COG0052 157 PDVLFVIDPRKEKI-AVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCEEEEeCCcHhHH-HHHHHHHcCCCEEEEecCC
Confidence 99999999854443 4556788999998766554
No 260
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=50.07 E-value=1.1e+02 Score=22.95 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=53.0
Q ss_pred CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCccccc--CCCCCeeEeeCCCCHHH
Q 016648 231 MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE--DQDGKIGYLFNPGDLDD 308 (385)
Q Consensus 231 ~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~--~~~~~~g~~~~~~~~~~ 308 (385)
..+.+....+.+++.+.+..+|+++..+.. .+.-.+++.+ -++.+|++...|...+--+ .+.|-.-.-.+....++
T Consensus 19 ~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~-~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~a 96 (133)
T PF00389_consen 19 FEVEFCDSPSEEELAERLKDADAIIVGSGT-PLTAEVLEAA-PNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEA 96 (133)
T ss_dssp SEEEEESSSSHHHHHHHHTTESEEEESTTS-TBSHHHHHHH-TT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHH
T ss_pred ceEEEeCCCCHHHHHHHhCCCeEEEEcCCC-CcCHHHHhcc-ceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcc
Confidence 478888888889999999999999975443 4778888888 8899998877766532100 02233333333345666
Q ss_pred HHHHH
Q 016648 309 CLSKL 313 (385)
Q Consensus 309 l~~~i 313 (385)
.++..
T Consensus 97 VAE~a 101 (133)
T PF00389_consen 97 VAEHA 101 (133)
T ss_dssp HHHHH
T ss_pred hhccc
Confidence 66655
No 261
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=49.81 E-value=1.7e+02 Score=25.97 Aligned_cols=98 Identities=17% Similarity=0.165 Sum_probs=49.2
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 261 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e 261 (385)
...++.+|.-.- | ..+.+.+......++.+++..+ +...+++.+.+... ++.+++.+.+..+|+++..+...
T Consensus 178 ~~~V~ViGaG~i--G-~~~a~~L~~~g~~~V~v~~r~~--~ra~~la~~~g~~~---~~~~~~~~~l~~aDvVi~at~~~ 249 (311)
T cd05213 178 GKKVLVIGAGEM--G-ELAAKHLAAKGVAEITIANRTY--ERAEELAKELGGNA---VPLDELLELLNEADVVISATGAP 249 (311)
T ss_pred CCEEEEECcHHH--H-HHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHcCCeE---EeHHHHHHHHhcCCEEEECCCCC
Confidence 445666664211 2 2334444442234566666443 22333333333222 23367888899999999876644
Q ss_pred CCcHHHHHHHh--cCCcEEEecCCCCCc
Q 016648 262 TLGLVVLEAMS--SGIPVVGVRAGGIPD 287 (385)
Q Consensus 262 ~~~~~~~Ea~a--~G~PvI~s~~~~~~e 287 (385)
.....+-+++. .|.|.+.-|.+-.++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~viDlavPrd 277 (311)
T cd05213 250 HYAKIVERAMKKRSGKPRLIVDLAVPRD 277 (311)
T ss_pred chHHHHHHHHhhCCCCCeEEEEeCCCCC
Confidence 43222222332 245666666664344
No 262
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=49.01 E-value=1.6e+02 Score=24.73 Aligned_cols=108 Identities=22% Similarity=0.251 Sum_probs=65.2
Q ss_pred EEEEeCCc-cHHHHHHHHcCCCeEEecccChHHHHHHHHh-CcEEEEcCC-CCCCcHHHHHHHh----cCCcEE-EecCC
Q 016648 212 IAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS-GDVFVMPSE-SETLGLVVLEAMS----SGIPVV-GVRAG 283 (385)
Q Consensus 212 l~i~G~g~-~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~-adi~v~ps~-~e~~~~~~~Ea~a----~G~PvI-~s~~~ 283 (385)
+.++-+.+ ..+.+.......+......-+.++....... .|++++--. .+.-|..++.-+. ...||| .|..+
T Consensus 3 ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~Lta~~ 82 (229)
T COG0745 3 ILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAAREQPDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIVLTARD 82 (229)
T ss_pred EEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEEEECCC
Confidence 44444333 2334444444445544444444566555554 788776433 3344656665555 567777 44455
Q ss_pred CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 284 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 284 ~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
...+.+..-+.|-..++..|-+++++...+..++..
T Consensus 83 ~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR 118 (229)
T COG0745 83 DEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRR 118 (229)
T ss_pred cHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCc
Confidence 555555443667778999999999999999988763
No 263
>PRK03743 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=48.48 E-value=57 Score=29.15 Aligned_cols=76 Identities=14% Similarity=0.141 Sum_probs=49.5
Q ss_pred CCeEEecccChHHHH--HHHHhCcEEEEcCCCCCC-cHHHHHH-----HhcCCcEEEe--cCCCCCcccccCCCCCeeEe
Q 016648 231 MPAVFTGMLLGEELS--QAYASGDVFVMPSESETL-GLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGYL 300 (385)
Q Consensus 231 ~~i~~~g~~~~~~~~--~~~~~adi~v~ps~~e~~-~~~~~Ea-----~a~G~PvI~s--~~~~~~e~~~~~~~~~~g~~ 300 (385)
.++...|++|.+.+. ....+.|++|.-+..-|. |.+++.. +..|+|+|-| |.|..-++. | .|.
T Consensus 238 ~g~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIA-----G-kg~- 310 (332)
T PRK03743 238 MGINVEGPVPADSVFHLALQGRYDAVLSLYHDQGHIATKTLDFERTIAITNGLPFLRTSVDHGTAFDIA-----G-TGK- 310 (332)
T ss_pred CCCcccCCCCchhhcccccccCCCEEEEcccccCChhheecccCCceEEecCCCeeEeCCCCcchhhhh-----c-CCC-
Confidence 367788999988654 344668999877664432 4554432 4569999955 455555665 2 222
Q ss_pred eCCCCHHHHHHHHhHh
Q 016648 301 FNPGDLDDCLSKLEPL 316 (385)
Q Consensus 301 ~~~~~~~~l~~~i~~l 316 (385)
-|+.++.++|.-.
T Consensus 311 ---A~~~S~~~Ai~lA 323 (332)
T PRK03743 311 ---ASSVSMEEAILLA 323 (332)
T ss_pred ---CCHHHHHHHHHHH
Confidence 2888999988765
No 264
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=47.48 E-value=1.2e+02 Score=26.42 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=55.1
Q ss_pred HHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEecCC-CCCcccccC--CCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 242 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAG-GIPDIIPED--QDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~~~-~~~e~~~~~--~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
..-..-+++||++|.-.. .|++-.++++....+.++|....+ ......... .+.+.-+..++.+...+++.|.+.+
T Consensus 42 p~d~~~l~~Adliv~~G~~~E~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L 121 (276)
T cd01016 42 AGDVEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIALEDTLDRSQLILDEEEGTYDPHIWFDVKLWKYAVKAVAEVL 121 (276)
T ss_pred HHHHHHHHhCCEEEEcCcChHHHHHHHHHHhccCCceEEeccCcCcccccccccCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 344556889999887653 567777777776444555543222 111111000 0113445666777888888888877
Q ss_pred c--CHHHHHHHHHHHHHHHHh
Q 016648 318 Y--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 318 ~--~~~~~~~~~~~a~~~~~~ 336 (385)
. ||+......+++..+.++
T Consensus 122 ~~~dP~~~~~y~~N~~~~~~~ 142 (276)
T cd01016 122 SEKLPEHKDEFQANSEAYVEE 142 (276)
T ss_pred HHHCcccHHHHHHHHHHHHHH
Confidence 5 666656666666665444
No 265
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=47.48 E-value=97 Score=21.77 Aligned_cols=90 Identities=22% Similarity=0.334 Sum_probs=55.4
Q ss_pred HHHHHHHcCCCe-EEecccChHHHHHHHHhC--cEEEEcCC-CCCCcHHHHHHHhc---CCcEEE-ecCCC---CCcccc
Q 016648 222 EELEKMFTGMPA-VFTGMLLGEELSQAYASG--DVFVMPSE-SETLGLVVLEAMSS---GIPVVG-VRAGG---IPDIIP 290 (385)
Q Consensus 222 ~~l~~~~~~~~i-~~~g~~~~~~~~~~~~~a--di~v~ps~-~e~~~~~~~Ea~a~---G~PvI~-s~~~~---~~e~~~ 290 (385)
+.++......++ .....-+.++....+... |++++-.. .+.-+..+++.+.. ++|+|. ++... ..+.+
T Consensus 12 ~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~~~~~~~~~- 90 (112)
T PF00072_consen 12 ELLEKLLERAGYEEVTTASSGEEALELLKKHPPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDDSDEVQEAL- 90 (112)
T ss_dssp HHHHHHHHHTTEEEEEEESSHHHHHHHHHHSTESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTSHHHHHHHH-
T ss_pred HHHHHHHHhCCCCEEEEECCHHHHHHHhcccCceEEEEEeeeccccccccccccccccccccEEEecCCCCHHHHHHHH-
Confidence 344444554455 444455557777777665 56666544 33445555555543 678774 43333 23444
Q ss_pred cCCCCCeeEeeCCCCHHHHHHHHh
Q 016648 291 EDQDGKIGYLFNPGDLDDCLSKLE 314 (385)
Q Consensus 291 ~~~~~~~g~~~~~~~~~~l~~~i~ 314 (385)
+.|..+++..|-+.+++.++|+
T Consensus 91 --~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 91 --RAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp --HTTESEEEESSSSHHHHHHHHH
T ss_pred --HCCCCEEEECCCCHHHHHHhhC
Confidence 6788999999999999998874
No 266
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=47.40 E-value=1.2e+02 Score=26.81 Aligned_cols=40 Identities=15% Similarity=0.329 Sum_probs=27.2
Q ss_pred HHHHHHHHhCcEEEE--cCCCC---CCcHHHHHHHhcCCcEEEec
Q 016648 242 EELSQAYASGDVFVM--PSESE---TLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 242 ~~~~~~~~~adi~v~--ps~~e---~~~~~~~Ea~a~G~PvI~s~ 281 (385)
.++.++++.||++++ |...+ -++-..++.|--|.-+|-+.
T Consensus 188 ~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~a 232 (311)
T PRK08410 188 VSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVG 232 (311)
T ss_pred ecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECC
Confidence 478888999999775 44433 35667777777776666443
No 267
>PRK07283 hypothetical protein; Provisional
Probab=47.22 E-value=66 Score=22.80 Aligned_cols=73 Identities=10% Similarity=0.132 Sum_probs=45.4
Q ss_pred cHHHHHHHHHhCCCceEEEEeCCc---cHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHH
Q 016648 196 SLDFLKRVMDRLPEARIAFIGDGP---YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 270 (385)
Q Consensus 196 ~~~~l~~a~~~~~~~~l~i~G~g~---~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea 270 (385)
|.+...++++. .+..++|+.... ..+.+...+...+|-+....+.+|+-..+... ..++.-..+||...+++.
T Consensus 22 G~~~v~~aik~-gk~~lVi~A~Das~~~~kk~~~~~~~~~Vp~~~~~t~~eLG~a~Gk~-~~vvai~d~g~a~~l~~~ 97 (98)
T PRK07283 22 GEELVVKAIQS-GQAKLVFLANDAGPNLTKKVTDKSNYYQVEVSTVFSTLELSAAVGKP-RKVLAVTDAGFSKKMRSL 97 (98)
T ss_pred cHHHHHHHHHc-CCccEEEEeCCCCHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCC-ceEEEEeChhHHHHHHHh
Confidence 46667777766 457777777432 23455555555566655555778888888773 444444567777776653
No 268
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=47.14 E-value=1.6e+02 Score=25.78 Aligned_cols=94 Identities=10% Similarity=0.038 Sum_probs=52.0
Q ss_pred HHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEecCC-CCCcccc-------------------cCCC--CCee
Q 016648 242 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAG-GIPDIIP-------------------EDQD--GKIG 298 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~~~-~~~e~~~-------------------~~~~--~~~g 298 (385)
.+-..-+++||++|.-.. .|++-.++++... +.++|....+ +...... ...+ .+.-
T Consensus 44 p~d~~~l~~Adliv~~G~~le~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~dPH 122 (286)
T cd01019 44 PSDARKLQEADLVVWIGPDLEAFLDKVLQGRK-KGKVLTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGGLDPH 122 (286)
T ss_pred HHHHHHHHhCCEEEEeCCCchHHHHHHHHhcC-cCceEecccCCcccccccccccccccccccccccccCCCCCCCCCCc
Confidence 344556788999887653 5667677776653 3455533211 1100000 0000 1233
Q ss_pred EeeCCCCHHHHHHHHhHhhc--CHHHHHHHHHHHHHHHHh
Q 016648 299 YLFNPGDLDDCLSKLEPLLY--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 299 ~~~~~~~~~~l~~~i~~ll~--~~~~~~~~~~~a~~~~~~ 336 (385)
+..++.+...++++|.+.|. +|+..+...+++.++.++
T Consensus 123 iWldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 162 (286)
T cd01019 123 LWLSPENAAEVAQAVAEKLSALDPDNAATYAANLEAFNAR 162 (286)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHH
Confidence 55666677778888777665 677666666666665443
No 269
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=47.01 E-value=1.2e+02 Score=25.80 Aligned_cols=74 Identities=20% Similarity=0.167 Sum_probs=49.0
Q ss_pred eEEecccChHHHHHHHHhCcEEEEcCC---CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHH
Q 016648 233 AVFTGMLLGEELSQAYASGDVFVMPSE---SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 309 (385)
Q Consensus 233 i~~~g~~~~~~~~~~~~~adi~v~ps~---~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l 309 (385)
+-..|+.+.+.=..++++.++-++-+. ..|+.-++--|..+|+|||.-+-+..+.- . ..+ .+.+++
T Consensus 171 iam~gPfs~e~n~aL~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~--------~-~~~--~~~~e~ 239 (248)
T PRK08057 171 IALRGPFSLELERALLRQHRIDVVVTKNSGGAGTEAKLEAARELGIPVVMIARPALPYA--------D-REF--EDVAEL 239 (248)
T ss_pred EEeeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCC--------C-ccc--CCHHHH
Confidence 557788877776778887766333332 22577899999999999998776643211 0 122 378888
Q ss_pred HHHHhHhh
Q 016648 310 LSKLEPLL 317 (385)
Q Consensus 310 ~~~i~~ll 317 (385)
.+.+.+.+
T Consensus 240 ~~~l~~~~ 247 (248)
T PRK08057 240 VAWLRHLL 247 (248)
T ss_pred HHHHHHhh
Confidence 87776653
No 270
>PRK13761 hypothetical protein; Provisional
Probab=45.75 E-value=1.8e+02 Score=24.31 Aligned_cols=94 Identities=16% Similarity=0.172 Sum_probs=52.4
Q ss_pred HHhCcEEEEcCCCCCCcHHHHHH-HhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHH
Q 016648 248 YASGDVFVMPSESETLGLVVLEA-MSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETM 326 (385)
Q Consensus 248 ~~~adi~v~ps~~e~~~~~~~Ea-~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~ 326 (385)
+-.||++++|....--. || ..+|+-||+-|...+.... +...- - =+|.+..++-.+..--...+..
T Consensus 148 Iy~ADVVLVPLEDGDR~----EaL~~mGK~VI~IDLNPLSRTa---r~A~i-t-----IVDni~RA~p~m~~~~~elk~~ 214 (248)
T PRK13761 148 IYSADVVLVPLEDGDRT----EALVKMGKTVIAIDLNPLSRTA---RTATI-T-----IVDNITRAVPNMTEYARELKKK 214 (248)
T ss_pred ceeccEEEecCCCCcHH----HHHHHcCCeEEEEeCCCccccc---ccCce-e-----eehhHHHHHHHHHHHHHHHhcC
Confidence 34799999997643222 33 3589999999987766544 22211 1 2345666665554432222222
Q ss_pred H-HHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 016648 327 G-QAARQEMEKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 327 ~-~~a~~~~~~~s~~~~~~~~~~~iy~~~ 354 (385)
. ....+.++.|+-+.....-++.+-+.+
T Consensus 215 ~~~el~~iv~~~dN~~~L~~al~~I~~rl 243 (248)
T PRK13761 215 DREELEEIVENYDNKKNLSEALKEIRERL 243 (248)
T ss_pred CHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 2 333444577887777666554444433
No 271
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=45.18 E-value=1.8e+02 Score=26.68 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=53.7
Q ss_pred cccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHc--CCCeEEecccChHHHHHHHHh--CcEEEEcCCCCCCcHHHHH
Q 016648 194 EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT--GMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLE 269 (385)
Q Consensus 194 ~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~--~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~e~~~~~~~E 269 (385)
.++++.+.+.++++.. +.+.+++......++.... ..++.+.... +.+.++... +|+++.....-..=...++
T Consensus 36 ~~n~~~L~~q~~~f~p-~~v~i~d~~~~~~l~~~l~~~~~~~~v~~G~--~~l~~l~~~~~~D~vv~AivG~aGL~pt~~ 112 (389)
T TIGR00243 36 GKNVALMVEQILEFRP-KFVAIDDEASLKDLKTMLQQQGSRTEVLVGE--EGICEMAALEDVDQVMNAIVGAAGLLPTLA 112 (389)
T ss_pred CCCHHHHHHHHHHcCC-CEEEEcCHHHHHHHHHHhhcCCCCcEEEECH--HHHHHHHcCCCCCEEEEhhhcHhhHHHHHH
Confidence 5789999999998853 5556666555566666543 2134333322 677777774 4888865442222235788
Q ss_pred HHhcCCcEEEec
Q 016648 270 AMSSGIPVVGVR 281 (385)
Q Consensus 270 a~a~G~PvI~s~ 281 (385)
|+.+|+.+...+
T Consensus 113 Ai~~gk~iaLAN 124 (389)
T TIGR00243 113 AIRAGKTIALAN 124 (389)
T ss_pred HHHCCCcEEEec
Confidence 999999886554
No 272
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=44.83 E-value=2.4e+02 Score=26.53 Aligned_cols=83 Identities=10% Similarity=0.148 Sum_probs=47.5
Q ss_pred ccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCC--Ce-EEecccChHHHHHHHHhC--cEEEEcCCCCCCcHHHHH
Q 016648 195 KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM--PA-VFTGMLLGEELSQAYASG--DVFVMPSESETLGLVVLE 269 (385)
Q Consensus 195 k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~--~i-~~~g~~~~~~~~~~~~~a--di~v~ps~~e~~~~~~~E 269 (385)
++++.+.+.++++. .+.+.+++......++...... ++ .+.|. +.+.++.... |++|.....-..-...++
T Consensus 93 ~Ni~lL~~q~~~f~-p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~G~---egl~~la~~~evDiVV~AIvG~aGL~pTl~ 168 (454)
T PLN02696 93 SNVTLLADQVRKFK-PKLVAVRNESLVDELKEALADLDDKPEIIPGE---EGIVEVARHPEAVTVVTGIVGCAGLKPTVA 168 (454)
T ss_pred CCHHHHHHHHHHhC-CCEEEEcCHHHHHHHHHhhcCCCCCcEEEECH---HHHHHHHcCCCCCEEEEeCccccchHHHHH
Confidence 56666666666663 2444555444344454433221 22 33333 6777777754 777766543222234589
Q ss_pred HHhcCCcEEEec
Q 016648 270 AMSSGIPVVGVR 281 (385)
Q Consensus 270 a~a~G~PvI~s~ 281 (385)
|+.+|+.|...|
T Consensus 169 AIkaGK~VALAN 180 (454)
T PLN02696 169 AIEAGKDIALAN 180 (454)
T ss_pred HHHCCCcEEEec
Confidence 999999988665
No 273
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=44.58 E-value=1.5e+02 Score=25.72 Aligned_cols=93 Identities=15% Similarity=0.219 Sum_probs=52.8
Q ss_pred cEEEEEeeccccccHHHHHHHHHh-CCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCC
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDR-LPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 261 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~-~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e 261 (385)
..++.+|--.-. ..+.+.+.. .+++++..+.+. ..+..++...+.+.. ... +++.+++..+|+++..+...
T Consensus 7 irIGIIG~G~IG---~~~a~~L~~~~~~~el~aV~dr-~~~~a~~~a~~~g~~--~~~--~~~eell~~~D~Vvi~tp~~ 78 (271)
T PRK13302 7 LRVAIAGLGAIG---KAIAQALDRGLPGLTLSAVAVR-DPQRHADFIWGLRRP--PPV--VPLDQLATHADIVVEAAPAS 78 (271)
T ss_pred eEEEEECccHHH---HHHHHHHHhcCCCeEEEEEECC-CHHHHHHHHHhcCCC--ccc--CCHHHHhcCCCEEEECCCcH
Confidence 456666632222 234455554 467777655443 223344444433310 111 34555578899999877655
Q ss_pred CCcHHHHHHHhcCCcEEEecCC
Q 016648 262 TLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 262 ~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
...-...+++..|++|++...+
T Consensus 79 ~h~e~~~~aL~aGk~Vi~~s~g 100 (271)
T PRK13302 79 VLRAIVEPVLAAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHHHHcCCcEEEecch
Confidence 5555678889999999975433
No 274
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=44.03 E-value=1.3e+02 Score=25.94 Aligned_cols=93 Identities=10% Similarity=0.038 Sum_probs=50.8
Q ss_pred HHHHHHHHhCcEEEEcCC-CCC-CcHHHHHHHhcCCcEEEecCCCCCccc-cc-------------CCCCCeeEeeCCCC
Q 016648 242 EELSQAYASGDVFVMPSE-SET-LGLVVLEAMSSGIPVVGVRAGGIPDII-PE-------------DQDGKIGYLFNPGD 305 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~-~e~-~~~~~~Ea~a~G~PvI~s~~~~~~e~~-~~-------------~~~~~~g~~~~~~~ 305 (385)
..-..-+++||++|.-.. .|+ +-.++++.. -+.++|....+ +..+. .. ....+..+..++.+
T Consensus 43 p~d~~~l~~Adlvv~~G~~le~~w~~~~~~~~-~~~~~v~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~ 120 (266)
T cd01018 43 PQQMKKLSEADLYFRIGLGFEEVWLERFRSNN-PKMQVVNMSKG-ITLIPMADHHHHHHGEHEHHHHGNYDPHIWLSPAN 120 (266)
T ss_pred HHHHHHHHhCCEEEEcCCcchHHHHHHHHhhC-CCCeEEECCCC-ceeccccccccccccccccccCCCCCCccCcCHHH
Confidence 344566888898886643 443 544555543 24455543211 11000 00 00123445667778
Q ss_pred HHHHHHHHhHhhc--CHHHHHHHHHHHHHHHHh
Q 016648 306 LDDCLSKLEPLLY--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 306 ~~~l~~~i~~ll~--~~~~~~~~~~~a~~~~~~ 336 (385)
...+++.|.+.|. +|+......+++..+.++
T Consensus 121 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 153 (266)
T cd01018 121 AKIMAENIYEALAELDPQNATYYQANLDALLAE 153 (266)
T ss_pred HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 8888888887775 676666666666665443
No 275
>COG1701 Uncharacterized protein conserved in archaea [Function unknown]
Probab=43.77 E-value=1.8e+02 Score=23.91 Aligned_cols=94 Identities=13% Similarity=0.145 Sum_probs=51.8
Q ss_pred HhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHH-HHHH
Q 016648 249 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELR-ETMG 327 (385)
Q Consensus 249 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~-~~~~ 327 (385)
-.||++++|....--.-.+ .-+|+-||+-|........ +... +. =++.+..++-+++.--.+. ..-.
T Consensus 152 y~ADVVLvpLEDGDRteaL---v~mGK~ViaIDLNPLSRTa---r~As--It----IVDnivRA~p~li~~~~em~~~~r 219 (256)
T COG1701 152 YSADVVLVPLEDGDRTEAL---VRMGKTVIAIDLNPLSRTA---RKAS--IT----IVDNIVRAVPNLIEFVKEMKNASR 219 (256)
T ss_pred eeccEEEEecCCCcHHHHH---HHhCCeEEEEeCCcccccc---ccCc--ee----eeHHHHHHHHHHHHHHHHHhccCH
Confidence 3789999997643222222 3479999999987766555 2221 11 2355777777765422211 1112
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 016648 328 QAARQEMEKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 328 ~~a~~~~~~~s~~~~~~~~~~~iy~~~ 354 (385)
+...+.+++|+-..+..+.++.+-+.+
T Consensus 220 eel~~iv~~ydN~~~l~eal~~I~~rL 246 (256)
T COG1701 220 EELEEIVENYDNKEVLAEALKHIAERL 246 (256)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 333444566777666655554443333
No 276
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=43.53 E-value=1.9e+02 Score=26.06 Aligned_cols=77 Identities=6% Similarity=0.024 Sum_probs=45.1
Q ss_pred HHHHHHHhCCCceEEEEeCCccHHHHHHHHcCC------------------CeEEecccChHHHHHHHHhCcEEEEcCCC
Q 016648 199 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGM------------------PAVFTGMLLGEELSQAYASGDVFVMPSES 260 (385)
Q Consensus 199 ~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~------------------~i~~~g~~~~~~~~~~~~~adi~v~ps~~ 260 (385)
.+++++...+++++.-+.+.. .+....++... .+.+.+ +..+++..+|+++..+..
T Consensus 15 ~va~al~~~~d~eLvav~d~~-~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~-----~~~el~~~vDVVIdaT~~ 88 (341)
T PRK04207 15 RVADAVAAQPDMELVGVAKTK-PDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAG-----TIEDLLEKADIVVDATPG 88 (341)
T ss_pred HHHHHHhcCCCcEEEEEECCC-hHHHHHHHHhcCCCccccCccccccccCCceEEcC-----ChhHhhccCCEEEECCCc
Confidence 456777667888877666532 22223222211 122222 344556789999987755
Q ss_pred CCCcHHHHHHHhcCCcEEEec
Q 016648 261 ETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
+..--..-.++.+|++||.+.
T Consensus 89 ~~~~e~a~~~~~aGk~VI~~~ 109 (341)
T PRK04207 89 GVGAKNKELYEKAGVKAIFQG 109 (341)
T ss_pred hhhHHHHHHHHHCCCEEEEcC
Confidence 544445566888899998654
No 277
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=43.34 E-value=1.8e+02 Score=26.56 Aligned_cols=95 Identities=14% Similarity=0.170 Sum_probs=57.8
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcC
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPS 258 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps 258 (385)
+++.++.++ ..++++.+.+.++++.. +.+.+++......++......++.+.... +.+.++... +|++|...
T Consensus 21 d~f~v~~La---a~~n~~~L~~q~~~f~p-~~v~i~~~~~~~~l~~~l~~~~~~v~~G~--~~l~~l~~~~~~D~vv~Ai 94 (383)
T PRK12464 21 EHFKVVGLT---ANYNIELLEQQIKRFQP-RIVSVADKELADTLRTRLSANTSKITYGT--DGLIAVATHPGSDLVLSSV 94 (383)
T ss_pred cccEEEEEE---CCCCHHHHHHHHHHhCC-CEEEEcCHHHHHHHHHhccCCCcEEEECH--HHHHHHHcCCCCCEEEEhh
Confidence 445444433 35789999999999853 55556665545556654432234333222 677777774 58888765
Q ss_pred CCCCCcHHHHHHHhcCCcEEEec
Q 016648 259 ESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
..-..=...++|+..|+.+...+
T Consensus 95 vG~aGL~pt~~Ai~~gk~iaLAN 117 (383)
T PRK12464 95 VGAAGLLPTIEALKAKKDIALAN 117 (383)
T ss_pred hcHhhHHHHHHHHHCCCcEEEec
Confidence 42222234678999999887554
No 278
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=43.13 E-value=1.9e+02 Score=23.82 Aligned_cols=122 Identities=16% Similarity=0.153 Sum_probs=64.9
Q ss_pred CceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcH-HHHHHHhcCCcEEEecCCCCCc
Q 016648 209 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGL-VVLEAMSSGIPVVGVRAGGIPD 287 (385)
Q Consensus 209 ~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~-~~~Ea~a~G~PvI~s~~~~~~e 287 (385)
+.++.++.... .+.+..+....++.+...-.. ...+..+++++..+....... ...+|-..|+||-+.+.+...+
T Consensus 32 ga~VtVvsp~~-~~~l~~l~~~~~i~~~~~~~~---~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~ 107 (205)
T TIGR01470 32 GAQLRVIAEEL-ESELTLLAEQGGITWLARCFD---ADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS 107 (205)
T ss_pred CCEEEEEcCCC-CHHHHHHHHcCCEEEEeCCCC---HHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe
Confidence 56777776433 356666666667766443211 234678888776654433333 3456668899997777665555
Q ss_pred ccccC--CCCCeeEee-CCCC----HHHHHHHHhHhhc-CHHHHHHHHHHHHHHH
Q 016648 288 IIPED--QDGKIGYLF-NPGD----LDDCLSKLEPLLY-NQELRETMGQAARQEM 334 (385)
Q Consensus 288 ~~~~~--~~~~~g~~~-~~~~----~~~l~~~i~~ll~-~~~~~~~~~~~a~~~~ 334 (385)
++-+. ..+..-+-+ ..+. ...+.+.|++++. +-+.+.++....|+.+
T Consensus 108 f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~~~~~~~~~~R~~~ 162 (205)
T TIGR01470 108 FIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLPPSLGDLATLAATWRDAV 162 (205)
T ss_pred EEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 44210 223222222 2222 3455566666654 3334445555556555
No 279
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=42.98 E-value=1.4e+02 Score=26.05 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=50.0
Q ss_pred HHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEecCCCCCcc-cc---cCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 243 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDI-IP---EDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~-~~---~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
.-..-+++||++|.-.. .|++=.+++....-+.++|.... ++..+ +. .....+.-+..++.+...+++.|.+.+
T Consensus 59 ~d~~~l~~Adlvv~~G~~~E~wl~~~~~~~~~~~~~v~~~~-~i~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~Ia~~L 137 (287)
T cd01137 59 SDIKKLSKADLILYNGLNLEPWLERLVKNAGKDVPVVAVSE-GIDPIPLEEGHYKGKPDPHAWMSPKNAIIYVKNIAKAL 137 (287)
T ss_pred HHHHHHHhCCEEEEcCCCcHHHHHHHHHhcCCCCcEEEecC-CccccccCccccCCCCCCCcCcCHHHHHHHHHHHHHHH
Confidence 34556788998886543 45554555554433445553321 11110 10 001123445667778888888888777
Q ss_pred c--CHHHHHHHHHHHHHHHHh
Q 016648 318 Y--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 318 ~--~~~~~~~~~~~a~~~~~~ 336 (385)
. ||+....+.+++..+.++
T Consensus 138 ~~~dP~~~~~y~~N~~~~~~~ 158 (287)
T cd01137 138 SEADPANAETYQKNAAAYKAK 158 (287)
T ss_pred HHHCcccHHHHHHHHHHHHHH
Confidence 5 666656666666655433
No 280
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=42.94 E-value=1.1e+02 Score=25.42 Aligned_cols=106 Identities=13% Similarity=0.200 Sum_probs=57.1
Q ss_pred ceEEEEeCCccH-HHHHHHHcCCCeEEeccc-ChHHHHHHHHhCcEEEEcCCC-CCCcHHHH-HHH---hcCCcEEEecC
Q 016648 210 ARIAFIGDGPYR-EELEKMFTGMPAVFTGML-LGEELSQAYASGDVFVMPSES-ETLGLVVL-EAM---SSGIPVVGVRA 282 (385)
Q Consensus 210 ~~l~i~G~g~~~-~~l~~~~~~~~i~~~g~~-~~~~~~~~~~~adi~v~ps~~-e~~~~~~~-Ea~---a~G~PvI~s~~ 282 (385)
..++++.+.+.. ..+...+. ..+.+.+.. +.++........|++++-... +.-|..++ +.+ .-+++||.-..
T Consensus 11 ~~~~~v~~~~l~~~~l~~~L~-~~~~v~~~~~~~~~~~~~~~~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vvvlt~ 89 (216)
T PRK10100 11 HTLLLITKPSLQATALLQHLK-QSLAITGKLHNIQRSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNT 89 (216)
T ss_pred ceEEEEeChHhhhHHHHHHHH-HhCCCeEEEcCHHHhhccCCCCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEEEEEC
Confidence 456666655543 23333332 222222222 123444434457888875443 23344442 433 34667765432
Q ss_pred -CCCC-cccccCC--CCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 283 -GGIP-DIIPEDQ--DGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 283 -~~~~-e~~~~~~--~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
.... ..+ . .|-.|++....+.+++.++|..+++.
T Consensus 90 ~~~~~~~~~---~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G 127 (216)
T PRK10100 90 PEDYPYREI---ENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred CchhHHHHH---HHhcCCeEEEECCCCHHHHHHHHHHHHcC
Confidence 2211 112 2 37889999999999999999988874
No 281
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=42.65 E-value=1.4e+02 Score=25.89 Aligned_cols=94 Identities=20% Similarity=0.162 Sum_probs=51.3
Q ss_pred HHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhc-CCcEEEecCCCCCccc-c----------cC--CCCCeeEeeCCCCH
Q 016648 242 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSS-GIPVVGVRAGGIPDII-P----------ED--QDGKIGYLFNPGDL 306 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~-G~PvI~s~~~~~~e~~-~----------~~--~~~~~g~~~~~~~~ 306 (385)
..-..-+++||++|.-.. .|++-.++++.... +.++|... .++..+- . +. ...+.-+..++.+.
T Consensus 44 p~d~~~l~~Adliv~~G~~~e~w~~k~~~~~~~~~~~~v~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~ 122 (282)
T cd01017 44 PKDIARIADADVFVYNGLGMETWAEKVLKSLQNKKLKVVEAS-KGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVLA 122 (282)
T ss_pred HHHHHHHHhCCEEEEcCcchHHHHHHHHHhcccCCceEEECC-CCccccccccccccccccccccCCCCCCccccCHHHH
Confidence 444566889999887543 56666677776542 23444321 1111100 0 00 01133456667777
Q ss_pred HHHHHHHhHhhc--CHHHHHHHHHHHHHHHHh
Q 016648 307 DDCLSKLEPLLY--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 307 ~~l~~~i~~ll~--~~~~~~~~~~~a~~~~~~ 336 (385)
..+++.|.+.+. +|+......+++.++.++
T Consensus 123 ~~~a~~Ia~~L~~~dP~~~~~y~~N~~~~~~~ 154 (282)
T cd01017 123 IQQVENIKDALIKLDPDNKEYYEKNAAAYAKK 154 (282)
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 777777777765 666555666666655433
No 282
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=42.60 E-value=44 Score=25.32 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=22.5
Q ss_pred cCCCCCCcHHHHHHHhcCCcEE-EecCCCCCccc
Q 016648 257 PSESETLGLVVLEAMSSGIPVV-GVRAGGIPDII 289 (385)
Q Consensus 257 ps~~e~~~~~~~Ea~a~G~PvI-~s~~~~~~e~~ 289 (385)
.++.-..+-.+-+-...|+||| +||...+++.+
T Consensus 59 S~R~~~~~evi~~I~~~G~PviVAtDV~p~P~~V 92 (138)
T PF04312_consen 59 SSRNMSRSEVIEWISEYGKPVIVATDVSPPPETV 92 (138)
T ss_pred eecCCCHHHHHHHHHHcCCEEEEEecCCCCcHHH
Confidence 3333444555666678899996 77888777766
No 283
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=41.82 E-value=2e+02 Score=23.81 Aligned_cols=139 Identities=14% Similarity=0.114 Sum_probs=74.7
Q ss_pred CceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHH-HHHhcCCcEEEecCCCCCc
Q 016648 209 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIPVVGVRAGGIPD 287 (385)
Q Consensus 209 ~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~-Ea~a~G~PvI~s~~~~~~e 287 (385)
..+++++.... .+++..++...++.... .+--...+..+++++..+..+...-.+. .|-..|+||=+.|.+...+
T Consensus 35 ga~v~Vvs~~~-~~el~~~~~~~~i~~~~---~~~~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~~~ 110 (210)
T COG1648 35 GADVTVVSPEF-EPELKALIEEGKIKWIE---REFDAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPELCD 110 (210)
T ss_pred CCEEEEEcCCc-cHHHHHHHHhcCcchhh---cccChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCcccCc
Confidence 67788888655 67788887776644332 1222333444888888777666655554 4566699998887776544
Q ss_pred ccccC--CCCCeeEee-CCCC----HHHHHHHHhHhhcC-HHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHH
Q 016648 288 IIPED--QDGKIGYLF-NPGD----LDDCLSKLEPLLYN-QELRETMGQAARQEMEK-YDWRAATRTIRNEQY 351 (385)
Q Consensus 288 ~~~~~--~~~~~g~~~-~~~~----~~~l~~~i~~ll~~-~~~~~~~~~~a~~~~~~-~s~~~~~~~~~~~iy 351 (385)
++-+. +.+.--+-+ ..+. ...+.+.|+.++.. -.....+..+.++.++. ..-......+++.++
T Consensus 111 f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~~l~~~~~~~~~~~~~~R~~v~~~~~~~~~Rr~~~~~~~ 183 (210)
T COG1648 111 FIFPAIVDRGPLQIAISTGGKSPVLARLLREKIEALLPPSLGEVAELAARLRERVKGSLPKGKERRRFWEKIF 183 (210)
T ss_pred eecceeeccCCeEEEEECCCCChHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 44211 112211111 1222 34555666666653 23334455666666643 444444444433343
No 284
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=41.42 E-value=80 Score=23.83 Aligned_cols=96 Identities=16% Similarity=0.260 Sum_probs=51.3
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 259 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~ 259 (385)
....++.+|.-+.. ..++.++....--++.+++.... .+.+.+.....++....+ +++...+..+|+++..+.
T Consensus 11 ~~~~vlviGaGg~a---r~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~---~~~~~~~~~~DivI~aT~ 84 (135)
T PF01488_consen 11 KGKRVLVIGAGGAA---RAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPL---EDLEEALQEADIVINATP 84 (135)
T ss_dssp TTSEEEEESSSHHH---HHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEG---GGHCHHHHTESEEEE-SS
T ss_pred CCCEEEEECCHHHH---HHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeH---HHHHHHHhhCCeEEEecC
Confidence 45567777754332 34445555543335888886532 223333333335666555 788899999999998765
Q ss_pred CCCCcHHHHHHHhcCCc-E-EEecCC
Q 016648 260 SETLGLVVLEAMSSGIP-V-VGVRAG 283 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~P-v-I~s~~~ 283 (385)
.... ...-|.+..+.+ . +.-|.+
T Consensus 85 ~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 85 SGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp TTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred CCCc-ccCHHHHHHHHhhhhceeccc
Confidence 3322 222344444432 1 444554
No 285
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=41.41 E-value=1.6e+02 Score=26.37 Aligned_cols=37 Identities=24% Similarity=0.408 Sum_probs=24.5
Q ss_pred HHHHHHHHhCcEEEE--cCCCCCC---cHHHHHHHhcCCcEE
Q 016648 242 EELSQAYASGDVFVM--PSESETL---GLVVLEAMSSGIPVV 278 (385)
Q Consensus 242 ~~~~~~~~~adi~v~--ps~~e~~---~~~~~Ea~a~G~PvI 278 (385)
+++.+++++||++++ |...|+- +...+..|--|.-+|
T Consensus 189 ~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI 230 (324)
T COG0111 189 DSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILI 230 (324)
T ss_pred ccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE
Confidence 568999999999775 5555554 445666665565333
No 286
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=41.35 E-value=2e+02 Score=23.56 Aligned_cols=83 Identities=18% Similarity=0.240 Sum_probs=43.5
Q ss_pred HhCCCceEEEEeCCccHH-HHHHHHcCCC-----eEE-ecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcE
Q 016648 205 DRLPEARIAFIGDGPYRE-ELEKMFTGMP-----AVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 277 (385)
Q Consensus 205 ~~~~~~~l~i~G~g~~~~-~l~~~~~~~~-----i~~-~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 277 (385)
.....-+++++|..+... .+++.+...+ -++ -|.+++... .-+..=|++++... ..-..++.||..+|+|+
T Consensus 57 ~~i~~~~ILfVgtk~~~~~~V~~~A~~~g~~~v~~RWlgGtLTN~~~-~~~~~Pdlliv~dp-~~~~~Av~EA~~l~IP~ 134 (196)
T TIGR01012 57 VRIEPEDILVVSARIYGQKPVLKFAKVTGARAIAGRFTPGTFTNPMQ-KAFREPEVVVVTDP-RADHQALKEASEVGIPI 134 (196)
T ss_pred HHhhCCeEEEEecCHHHHHHHHHHHHHhCCceECCeeCCCCCCCccc-cccCCCCEEEEECC-ccccHHHHHHHHcCCCE
Confidence 333455788888655333 2333332221 122 233333221 12455566665432 23367899999999999
Q ss_pred EEe-cCCCCCccc
Q 016648 278 VGV-RAGGIPDII 289 (385)
Q Consensus 278 I~s-~~~~~~e~~ 289 (385)
|+- |...-++.+
T Consensus 135 Iai~DTn~dp~~v 147 (196)
T TIGR01012 135 VALCDTDNPLRYV 147 (196)
T ss_pred EEEeeCCCCCccC
Confidence 975 444445554
No 287
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=40.99 E-value=2.6e+02 Score=24.74 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=56.3
Q ss_pred HHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCC-cEEEecCC-CCCccccc--CCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 244 LSQAYASGDVFVMPSE-SETLGLVVLEAMSSGI-PVVGVRAG-GIPDIIPE--DQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 244 ~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~-PvI~s~~~-~~~e~~~~--~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
=..-++.||+++.-.. .|+|-.++++.+.... ++|....+ ..-..... ....+.....++.+...+++.|.+.+.
T Consensus 75 di~~i~~ADliv~nG~~le~w~~k~~~~~~~~~~~~i~~s~~i~~~~~~~~~~~g~~dpH~Wldp~na~~~v~~I~~~L~ 154 (303)
T COG0803 75 DIAKLRKADLIVYNGLGLEPWLEKLLESADKKKVLVIEVSDGIELLPLPGEEEEGVNDPHVWLDPKNAKIYAENIADALV 154 (303)
T ss_pred HHHHHHhCCEEEEcCCChHHHHHHHHHhcccCCceEEEccCCccccCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHH
Confidence 3455788999887654 5667777777766554 34432211 11111100 001245566677788888888887776
Q ss_pred --CHHHHHHHHHHHHHHHHh
Q 016648 319 --NQELRETMGQAARQEMEK 336 (385)
Q Consensus 319 --~~~~~~~~~~~a~~~~~~ 336 (385)
+|+..+.+.+++.++.++
T Consensus 155 ~~dP~~~~~y~~N~~~y~~k 174 (303)
T COG0803 155 ELDPENKETYEKNAEAYLKK 174 (303)
T ss_pred HhCcccHHHHHHHHHHHHHH
Confidence 787777788888777554
No 288
>PRK03371 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase 2; Provisional
Probab=40.56 E-value=1.2e+02 Score=27.09 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=48.6
Q ss_pred CCeEEecccChHHHH--HHHHhCcEEEEcCCCCCC-cHHHHHH-----HhcCCcEEEe--cCCCCCcccccCCCCCeeEe
Q 016648 231 MPAVFTGMLLGEELS--QAYASGDVFVMPSESETL-GLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGYL 300 (385)
Q Consensus 231 ~~i~~~g~~~~~~~~--~~~~~adi~v~ps~~e~~-~~~~~Ea-----~a~G~PvI~s--~~~~~~e~~~~~~~~~~g~~ 300 (385)
.++...|++|.+.+. ....+.|++|.-+..-|. |.|++.. +..|+|+|-| |.|..-++. |. |
T Consensus 237 ~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIA-----Gk-G-- 308 (326)
T PRK03371 237 KGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLKLLGFYDGVNITAGLPFIRTSADHGTAFDIA-----WT-G-- 308 (326)
T ss_pred CCCcccCCCCchhhcccccccCCCEEEEccccccchhheecccccceEEecCCCeeEecCCCCchhhhh-----cC-C--
Confidence 367788999988754 334567999877654332 4444422 4569999955 556555665 22 2
Q ss_pred eCCCCHHHHHHHHhHh
Q 016648 301 FNPGDLDDCLSKLEPL 316 (385)
Q Consensus 301 ~~~~~~~~l~~~i~~l 316 (385)
--|+.++.++|.-.
T Consensus 309 --~A~~~S~~~Ai~lA 322 (326)
T PRK03371 309 --KAKSESMAVSIKLA 322 (326)
T ss_pred --cCCHHHHHHHHHHH
Confidence 12788898888765
No 289
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=40.48 E-value=2.3e+02 Score=23.98 Aligned_cols=43 Identities=21% Similarity=0.314 Sum_probs=30.7
Q ss_pred HHHHHHHHhCcEEEEcCC----------CCCCcHHHHHHHhcCCcEEEecCCC
Q 016648 242 EELSQAYASGDVFVMPSE----------SETLGLVVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~----------~e~~~~~~~Ea~a~G~PvI~s~~~~ 284 (385)
++..+.+..||+++++-- ..++-..+-|+...|+|++.+..|.
T Consensus 71 ~d~~~~l~~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGA 123 (233)
T PRK05282 71 ADPVAAIENAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGA 123 (233)
T ss_pred hhhHHHHhcCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHH
Confidence 556678899997776632 1234445778999999999887664
No 290
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=40.48 E-value=82 Score=23.58 Aligned_cols=60 Identities=15% Similarity=0.216 Sum_probs=42.5
Q ss_pred EEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA 249 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~ 249 (385)
.-+|+|+++..---+.+-+++.+.-+++-+|.|-..... ..-...|.-+.+.++....++
T Consensus 37 ~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kk------tpCGFCFVeyy~~~dA~~Alr 96 (153)
T KOG0121|consen 37 CTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKK------TPCGFCFVEYYSRDDAEDALR 96 (153)
T ss_pred ceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCc------CccceEEEEEecchhHHHHHH
Confidence 478999999988888999999999999999999332100 011466766666666554444
No 291
>PF04166 PdxA: Pyridoxal phosphate biosynthetic protein PdxA; InterPro: IPR005255 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents 4-hydroxythreonine-4-phosphate dehydrogenase (PdxA, 1.1.1.262 from EC). PdxA takes part in vitamin B6 biosynthesis, forming pyridoxine 5'-phosphate from 4-(phosphohydroxy)-L-threonine and 1-deoxy-D-xylulose-5-phosphate.; GO: 0050570 4-hydroxythreonine-4-phosphate dehydrogenase activity, 0051287 NAD binding, 0008615 pyridoxine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1YXO_A 1PS6_A 1PS7_C 1PTM_B 1R8K_B 2HI1_A 3LXY_A 3TSN_B.
Probab=40.35 E-value=36 Score=29.89 Aligned_cols=99 Identities=18% Similarity=0.187 Sum_probs=54.1
Q ss_pred CCceEEEEeC----------C-ccHHHHHHHH---cCCCeEEecccChHHH--HHHHHhCcEEEEcCCCCC-CcHHHHHH
Q 016648 208 PEARIAFIGD----------G-PYREELEKMF---TGMPAVFTGMLLGEEL--SQAYASGDVFVMPSESET-LGLVVLEA 270 (385)
Q Consensus 208 ~~~~l~i~G~----------g-~~~~~l~~~~---~~~~i~~~g~~~~~~~--~~~~~~adi~v~ps~~e~-~~~~~~Ea 270 (385)
++-++-+.|= | ++.+.+...+ +..++.+.|++|.+.+ ...+...|++|.-+..-| .|.|++..
T Consensus 175 ~~PrIaV~gLNPHaGe~G~~G~EE~~~I~PAI~~~~~~gi~v~GP~paDt~F~~~~~~~fD~vvaMYHDQGlip~K~l~f 254 (298)
T PF04166_consen 175 ENPRIAVAGLNPHAGEGGLFGREEIEIIIPAIEEARAEGIDVFGPYPADTVFGKANRGKFDAVVAMYHDQGLIPFKLLGF 254 (298)
T ss_dssp SS-EEEEE-SSGGGGTTTTTBSHHHHTHHHHHHHHHHTTHEEEEEE-HHHHTSHHHHTT-SEEEESSHHHHHHHHHHHCT
T ss_pred CCCcEEEEEeCCCCCCCCCCcHhHHHHHHHHHHHHHhCCCceECCCccHHhhhcchhccCCEEEEeecccCccceeeccc
Confidence 5678889881 2 2222222222 2447999999998875 356677899986654222 24444332
Q ss_pred -----HhcCCcEEEe--cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHh
Q 016648 271 -----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 271 -----~a~G~PvI~s--~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~l 316 (385)
+..|+|+|-| |.|..-++. |.+ --|+.++.++|.-+
T Consensus 255 ~~gVnvTlGLP~iRTS~DHGTAfDIA-----Gkg-----~A~~~s~~~Ai~~A 297 (298)
T PF04166_consen 255 DEGVNVTLGLPIIRTSPDHGTAFDIA-----GKG-----IADPSSMIEAIKLA 297 (298)
T ss_dssp TTSEEEEESSSSEEEEESS-S-CCGT-----TTT-----TS-THHHHHHHHHH
T ss_pred ccceEEecCCCeeeecCCCCchhhhh-----CCC-----CCChHHHHHHHHHh
Confidence 3458898844 666666766 322 12778888888643
No 292
>TIGR00557 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase. This model represents PdxA, an NAD+-dependent 4-hydroxythreonine 4-phosphate dehydrogenase (EC 1.1.1.262) active in pyridoxal phosphate biosynthesis.
Probab=40.29 E-value=85 Score=27.94 Aligned_cols=76 Identities=24% Similarity=0.275 Sum_probs=49.0
Q ss_pred CCeEEecccChHHHH--HHHHhCcEEEEcCCCCCC-cHHHHHH-----HhcCCcEEEe--cCCCCCcccccCCCCCeeEe
Q 016648 231 MPAVFTGMLLGEELS--QAYASGDVFVMPSESETL-GLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGYL 300 (385)
Q Consensus 231 ~~i~~~g~~~~~~~~--~~~~~adi~v~ps~~e~~-~~~~~Ea-----~a~G~PvI~s--~~~~~~e~~~~~~~~~~g~~ 300 (385)
.++...|++|.+.+. ......|++|.-+..-|. |.|++.- +..|+|+|-| |.|..-++. |. |
T Consensus 231 ~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIA-----Gk-g-- 302 (320)
T TIGR00557 231 EGIDLIGPLPADTLFHPAALAKYDAVLAMYHDQGLIPLKYLGFDEGVNVTLGLPFIRTSPDHGTAFDIA-----GK-G-- 302 (320)
T ss_pred CCCcccCCCCchhhcccccccCCCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhh-----cC-C--
Confidence 368888999988654 334567999877664432 5555422 3569999955 455555555 22 2
Q ss_pred eCCCCHHHHHHHHhHh
Q 016648 301 FNPGDLDDCLSKLEPL 316 (385)
Q Consensus 301 ~~~~~~~~l~~~i~~l 316 (385)
--|..++.++|.-+
T Consensus 303 --~A~~~S~~~Ai~~A 316 (320)
T TIGR00557 303 --KADPGSLIAAIKLA 316 (320)
T ss_pred --CCCHHHHHHHHHHH
Confidence 12788888888755
No 293
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=40.13 E-value=1e+02 Score=27.64 Aligned_cols=102 Identities=15% Similarity=0.241 Sum_probs=61.7
Q ss_pred CCceEEEEeCCccHHHHHHHHcCC--CeEEe-cccChHHHHHHHHhCcEEEEcCCCCCCcHHH--HHHHhcCCcEEEecC
Q 016648 208 PEARIAFIGDGPYREELEKMFTGM--PAVFT-GMLLGEELSQAYASGDVFVMPSESETLGLVV--LEAMSSGIPVVGVRA 282 (385)
Q Consensus 208 ~~~~l~i~G~g~~~~~l~~~~~~~--~i~~~-g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~--~Ea~a~G~PvI~s~~ 282 (385)
.+-.|+|+|+.. .++.++.+. -|.+. ||-..+++..+-++-++=++.+.+++|-.+. --|++-- .|-.+.
T Consensus 113 ~~g~LlIVGnR~---~iq~lAL~~~~AVLvTGGF~~s~evi~lAne~~lPvlstsYDTFTVAtmIN~Al~n~--lIKkdI 187 (432)
T COG4109 113 DPGGLLIVGNRE---DIQLLALENGNAVLVTGGFDVSDEVIKLANEKGLPVLSTSYDTFTVATMINKALSNQ--LIKKDI 187 (432)
T ss_pred CCCceEEEecHH---HHHHHHHhcCCeEEEeCCCCccHHHHHhhcccCCceEEecccceeHHHHHHHHHHHh--hhhhhe
Confidence 456789999754 344444333 35554 4555678888888888888888888885443 2333321 222233
Q ss_pred CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHh
Q 016648 283 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 283 ~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~l 316 (385)
--..+++.+. ...+++.+.+.++++.+..++.
T Consensus 188 ~~Vedi~~P~--~~~~yL~~~d~v~d~~~l~~kt 219 (432)
T COG4109 188 ITVEDIMTPL--EDTSYLRETDTVEDWLDLVEKT 219 (432)
T ss_pred eeHHHhcccc--ccceeccccccHHHHHHHHHHc
Confidence 3345555211 4567888888888887766554
No 294
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=40.10 E-value=25 Score=21.96 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=14.7
Q ss_pred cHHHHHHHhcCCcEEEe
Q 016648 264 GLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 264 ~~~~~Ea~a~G~PvI~s 280 (385)
-.++.|++..|.||++-
T Consensus 14 K~kI~esav~G~pVvAL 30 (58)
T PF11238_consen 14 KDKIAESAVMGTPVVAL 30 (58)
T ss_pred hhHHHHHHhcCceeEee
Confidence 45799999999999974
No 295
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=40.01 E-value=1.5e+02 Score=26.87 Aligned_cols=42 Identities=7% Similarity=-0.020 Sum_probs=31.3
Q ss_pred eEEecccChHHHHHHHHhCcEEEEc---CCCCCCcHHHHHHHhcC
Q 016648 233 AVFTGMLLGEELSQAYASGDVFVMP---SESETLGLVVLEAMSSG 274 (385)
Q Consensus 233 i~~~g~~~~~~~~~~~~~adi~v~p---s~~e~~~~~~~Ea~a~G 274 (385)
+..+-+++.+.+.+.++.++-++.. ....|+|..+.|.++-.
T Consensus 267 ~~~l~Pld~e~i~~~~~~~~~IvvvEE~~~~GGlG~~Va~~l~e~ 311 (355)
T PTZ00182 267 LRSLRPWDRETIVKSVKKTGRCVIVHEAPPTCGIGAEIAAQIMED 311 (355)
T ss_pred EeeCCCCCHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 5567777778889999998877664 23568888888888664
No 296
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=39.70 E-value=2.5e+02 Score=29.04 Aligned_cols=104 Identities=12% Similarity=0.058 Sum_probs=62.8
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh----CcEEEEcCCCCCCcHHHHHHHh---cCCcEEEec
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS----GDVFVMPSESETLGLVVLEAMS---SGIPVVGVR 281 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~----adi~v~ps~~e~~~~~~~Ea~a---~G~PvI~s~ 281 (385)
.+++++.+.+. ...+.......+....+.-+.++....+.. .|++++ ...+..+..+++.+. ..+|+|...
T Consensus 698 ~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll-~~~~~~g~~l~~~l~~~~~~ipIIvls 776 (828)
T PRK13837 698 ETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV-DDRLLDEEQAAAALHAAAPTLPIILGG 776 (828)
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE-CCCCCCHHHHHHHHHhhCCCCCEEEEe
Confidence 35666665433 334444444455656666655676666643 488887 333334444444443 457887543
Q ss_pred CC-C---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 282 AG-G---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 282 ~~-~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.. . ..+.. ..| .+++..|-+.+++...+..++.
T Consensus 777 ~~~~~~~~~~~~---~~G-~d~L~KP~~~~~L~~~l~~~l~ 813 (828)
T PRK13837 777 NSKTMALSPDLL---ASV-AEILAKPISSRTLAYALRTALA 813 (828)
T ss_pred CCCchhhhhhHh---hcc-CcEEeCCCCHHHHHHHHHHHHc
Confidence 22 2 22333 456 8899999999999999988765
No 297
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=39.66 E-value=3.1e+02 Score=25.37 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=61.6
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHh-CCCceEEEEeCCc-cHHHHHHHHc-CCCeEEecccChHHHHHHHHh--CcEEE
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDR-LPEARIAFIGDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYAS--GDVFV 255 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~-~~~~~l~i~G~g~-~~~~l~~~~~-~~~i~~~g~~~~~~~~~~~~~--adi~v 255 (385)
++.+.+..++.++..-...+++.+.+ .|+.++++....+ ..+...+... ...+.+.+.-....+..+++. -|+++
T Consensus 50 ~~~iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~ 129 (425)
T PRK05749 50 GPLIWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVI 129 (425)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEE
Confidence 45567777888877777777877755 4788876654222 2222323222 122444444333466666655 47776
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
.-. .+-++..+..+-..|+|++..+
T Consensus 130 ~~~-~~~~~~~l~~~~~~~ip~vl~~ 154 (425)
T PRK05749 130 IME-TELWPNLIAELKRRGIPLVLAN 154 (425)
T ss_pred EEe-cchhHHHHHHHHHCCCCEEEEe
Confidence 543 3667888888888999998764
No 298
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=39.43 E-value=1e+02 Score=27.61 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=33.9
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCC-EEEEEecCCC
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVP 99 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~ 99 (385)
...+.+...+.+||.|++-.....-...++.+...|.+ .+.|+|...+
T Consensus 224 ~~~ll~~~LR~~PD~IivGEiR~~ea~~~l~a~~tGh~G~~tTiHa~s~ 272 (332)
T PRK13900 224 TQDLIEACLRLRPDRIIVGELRGAEAFSFLRAINTGHPGSISTLHADSP 272 (332)
T ss_pred HHHHHHHHhccCCCeEEEEecCCHHHHHHHHHHHcCCCcEEEEEecCCH
Confidence 45677888899999999976432222234555667887 8899999653
No 299
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=39.02 E-value=1.3e+02 Score=25.61 Aligned_cols=71 Identities=18% Similarity=0.172 Sum_probs=47.2
Q ss_pred eEEecccChHHHHHHHHhCcE--EEEc-CCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHH
Q 016648 233 AVFTGMLLGEELSQAYASGDV--FVMP-SESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDC 309 (385)
Q Consensus 233 i~~~g~~~~~~~~~~~~~adi--~v~p-s~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l 309 (385)
+-..|+.+.+.=..++++..+ +|.= |-..|+..++--|..+|+|||.-.-+..+.-. ..+ .+.+++
T Consensus 175 ia~~GPfs~e~n~al~~~~~i~~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~~~~---------~~~--~~~~e~ 243 (249)
T PF02571_consen 175 IAMQGPFSKELNRALFRQYGIDVLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEPYGD---------PVV--ETIEEL 243 (249)
T ss_pred EEEeCCCCHHHHHHHHHHcCCCEEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCCCCC---------ccc--CCHHHH
Confidence 557788877776777777655 4431 22337788999999999999988766544222 112 377777
Q ss_pred HHHHh
Q 016648 310 LSKLE 314 (385)
Q Consensus 310 ~~~i~ 314 (385)
.+.++
T Consensus 244 l~~l~ 248 (249)
T PF02571_consen 244 LDWLE 248 (249)
T ss_pred HHHHh
Confidence 66654
No 300
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=38.82 E-value=15 Score=22.87 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=13.9
Q ss_pred HHHhcCCcEEEecCCCCCcccccCCCCCeeEee--CCCCHHHHHHHHh
Q 016648 269 EAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLF--NPGDLDDCLSKLE 314 (385)
Q Consensus 269 Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~--~~~~~~~l~~~i~ 314 (385)
-|-..|+|+++....-..+.+ |.....+ +..+.++|.++|.
T Consensus 10 ~A~~~~lp~~~gSDAH~~~~v-----G~~~t~~~~~~~s~~~l~~alr 52 (56)
T PF13263_consen 10 LAEKYGLPFTGGSDAHFLEEV-----GRGYTEFEGPIRSPEELLEALR 52 (56)
T ss_dssp HHHHTT--EEEE--BSSGGGT-----TTTHHHH---------------
T ss_pred HHHHcCCCeEeEEcccChhhc-----CCEeeecccccccccccccccc
Confidence 466789999987655555555 3333333 2335566666654
No 301
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=38.69 E-value=1.9e+02 Score=22.58 Aligned_cols=41 Identities=12% Similarity=0.085 Sum_probs=26.6
Q ss_pred HHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcc
Q 016648 248 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDI 288 (385)
Q Consensus 248 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~ 288 (385)
+..+|+++..+..+.....+.+....+.||-..+.+...++
T Consensus 68 l~~a~lViaaT~d~e~N~~i~~~a~~~~~vn~~d~~~~~~f 108 (157)
T PRK06719 68 IKDAHLIYAATNQHAVNMMVKQAAHDFQWVNVVSDGTESSF 108 (157)
T ss_pred CCCceEEEECCCCHHHHHHHHHHHHHCCcEEECCCCCcCcE
Confidence 57789988887766666666666555666665554443333
No 302
>PLN02527 aspartate carbamoyltransferase
Probab=38.63 E-value=2.8e+02 Score=24.56 Aligned_cols=134 Identities=14% Similarity=0.226 Sum_probs=75.2
Q ss_pred HHHHHHHHHhCCeEEEc--ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChh---hHhhhcCCCCCCcEEEEEe
Q 016648 115 WLVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVG 189 (385)
Q Consensus 115 ~~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G 189 (385)
.-..+.+-+.+|.|+.= +....+.+.++- .+-||. +-+-....|...-.+ ..... +.-+...+.|+|
T Consensus 87 ~Dta~vls~y~D~iviR~~~~~~~~~~a~~~-----~vPVIN-a~~g~~~HPtQ~LaDl~Ti~e~~--g~l~g~kva~vG 158 (306)
T PLN02527 87 EDTIRTVEGYSDIIVLRHFESGAARRAAATA-----EIPVIN-AGDGPGQHPTQALLDVYTIQREI--GRLDGIKVGLVG 158 (306)
T ss_pred HHHHHHHHHhCcEEEEECCChhHHHHHHHhC-----CCCEEE-CCCCCCCChHHHHHHHHHHHHHh--CCcCCCEEEEEC
Confidence 33556777889998874 344445554432 344554 433222333211111 11112 223567899999
Q ss_pred eccccccHHHHHHHHHhCCCceEEEEeCCcc--HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC
Q 016648 190 RLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 259 (385)
Q Consensus 190 ~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~ 259 (385)
-....+-..-++.++..+.++.+.+++...+ .+++.+.+.+.+..+.- . +++.+.++.||++.....
T Consensus 159 D~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~-~--~d~~~a~~~aDvvyt~~~ 227 (306)
T PLN02527 159 DLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEE-S--SDLMEVASKCDVLYQTRI 227 (306)
T ss_pred CCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEE-E--cCHHHHhCCCCEEEECCc
Confidence 6643345677788888777899999995432 23343333332322221 1 677888999999887543
No 303
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=38.24 E-value=2.1e+02 Score=24.42 Aligned_cols=41 Identities=15% Similarity=0.259 Sum_probs=26.4
Q ss_pred HHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe-cCCCCCccc
Q 016648 248 YASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGGIPDII 289 (385)
Q Consensus 248 ~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s-~~~~~~e~~ 289 (385)
+..-|++|+... ..-...+.||-.+|+|+|+- |...-.+++
T Consensus 116 f~~P~llIV~Dp-~~d~qAI~EA~~lnIPvIal~DTds~p~~V 157 (249)
T PTZ00254 116 FMEPRLLIVTDP-RTDHQAIREASYVNIPVIALCDTDSPLEYV 157 (249)
T ss_pred cCCCCEEEEeCC-CcchHHHHHHHHhCCCEEEEecCCCCcccC
Confidence 445566665432 23367899999999999975 444444454
No 304
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=38.16 E-value=2.2e+02 Score=23.18 Aligned_cols=101 Identities=20% Similarity=0.267 Sum_probs=63.6
Q ss_pred cHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCCCCC-cHHH---HHHHhcCCcEE-EecCCCCCcccccC
Q 016648 220 YREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESETL-GLVV---LEAMSSGIPVV-GVRAGGIPDIIPED 292 (385)
Q Consensus 220 ~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~e~~-~~~~---~Ea~a~G~PvI-~s~~~~~~e~~~~~ 292 (385)
-.+.+..+....++....|.+.+++..-.. ..-++|+--+.-|. |.-+ +......+||| .|..|.++--+..-
T Consensus 16 vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiTGhgDIpmaV~Am 95 (202)
T COG4566 16 VRDALAFLLESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLTGHGDIPMAVQAM 95 (202)
T ss_pred HHHHHHHHHHhCCceeeeecCHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEeCCCChHHHHHHH
Confidence 345666666677788888877766654421 12455554443333 4444 33445568987 45566655444222
Q ss_pred CCCCeeEeeCCCCHHHHHHHHhHhhcCH
Q 016648 293 QDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320 (385)
Q Consensus 293 ~~~~~g~~~~~~~~~~l~~~i~~ll~~~ 320 (385)
+.|-..++-+|-+.+.+.+++++.+...
T Consensus 96 K~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 96 KAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred HcchhhHHhCCCchHHHHHHHHHHHHHH
Confidence 5666678888999999999999998753
No 305
>PRK05312 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=37.97 E-value=1e+02 Score=27.59 Aligned_cols=75 Identities=23% Similarity=0.271 Sum_probs=49.1
Q ss_pred CeEEecccChHHHH--HHHHhCcEEEEcCCCCCC-cHHHHHH-----HhcCCcEEEe--cCCCCCcccccCCCCCeeEee
Q 016648 232 PAVFTGMLLGEELS--QAYASGDVFVMPSESETL-GLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGYLF 301 (385)
Q Consensus 232 ~i~~~g~~~~~~~~--~~~~~adi~v~ps~~e~~-~~~~~Ea-----~a~G~PvI~s--~~~~~~e~~~~~~~~~~g~~~ 301 (385)
++...|++|.+.+. ....+.|++|.-+..-|. |.|++.. +..|+|+|-| |.|..-++. |. |
T Consensus 244 Gi~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIA-----Gk-g--- 314 (336)
T PRK05312 244 GIDARGPLPADTMFHAAARATYDAAICMYHDQALIPIKTLDFDGGVNVTLGLPFIRTSPDHGTAFDIA-----GK-G--- 314 (336)
T ss_pred CCCccCCCCchhhcccccccCCCEEEEcccccCChhheecccCcceEEecCCCeeEeCCCCcchhhhh-----cC-C---
Confidence 67788999988654 345678999877664432 5554432 4569999955 455555655 22 2
Q ss_pred CCCCHHHHHHHHhHh
Q 016648 302 NPGDLDDCLSKLEPL 316 (385)
Q Consensus 302 ~~~~~~~l~~~i~~l 316 (385)
--|..++.++|.-.
T Consensus 315 -~A~~~S~~~Ai~lA 328 (336)
T PRK05312 315 -IARPDSLIAALRLA 328 (336)
T ss_pred -CCCHHHHHHHHHHH
Confidence 22788899888765
No 306
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=37.79 E-value=2.4e+02 Score=23.42 Aligned_cols=169 Identities=18% Similarity=0.169 Sum_probs=87.8
Q ss_pred CCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHH
Q 016648 125 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVM 204 (385)
Q Consensus 125 ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~ 204 (385)
.+-|+++-+..++++.+... .+..++...+-.+ |+.. ..+.+..+.+|-..+.-+.+.+-+|+
T Consensus 69 eeei~tsl~aa~~~~~~~~l---rP~l~v~d~a~~d-F~gi-------------dTs~pn~VViglape~F~y~~ln~AF 131 (262)
T KOG3040|consen 69 EEEIFTSLPAARQYLEENQL---RPYLIVDDDALED-FDGI-------------DTSDPNCVVIGLAPEGFSYQRLNRAF 131 (262)
T ss_pred HHHhcCccHHHHHHHHhcCC---CceEEEcccchhh-CCCc-------------cCCCCCeEEEecCcccccHHHHHHHH
Confidence 34567777777777776643 2344444443222 2221 12234455555554444555555555
Q ss_pred HhC---CCceEEEEeCCccHHHHHHHHcC-------------CCeEEecccChHHHHHHHHhCcEEEEcCC----CCCCc
Q 016648 205 DRL---PEARIAFIGDGPYREELEKMFTG-------------MPAVFTGMLLGEELSQAYASGDVFVMPSE----SETLG 264 (385)
Q Consensus 205 ~~~---~~~~l~i~G~g~~~~~l~~~~~~-------------~~i~~~g~~~~~~~~~~~~~adi~v~ps~----~e~~~ 264 (385)
+-+ ++..++-+|.|.+.+....+... ......|--+..=....++.-. +-|+. .+-..
T Consensus 132 rvL~e~~k~~LIai~kgryykr~~Gl~lgpG~fv~aLeyatg~~a~vvGKP~~~fFe~al~~~g--v~p~~aVMIGDD~~ 209 (262)
T KOG3040|consen 132 RVLLEMKKPLLIAIGKGRYYKRVDGLCLGPGPFVAALEYATGCEATVVGKPSPFFFESALQALG--VDPEEAVMIGDDLN 209 (262)
T ss_pred HHHHcCCCCeEEEecCceeeeeccccccCchHHHHHhhhccCceEEEecCCCHHHHHHHHHhcC--CChHHheEEccccc
Confidence 544 66778878877655443333221 1345666655444444444432 11111 22223
Q ss_pred HHHHHHHhcCCcEEEecCCCCCc--ccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 265 LVVLEAMSSGIPVVGVRAGGIPD--IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 265 ~~~~Ea~a~G~PvI~s~~~~~~e--~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
.-+.-|++||.--|.-..|-... .. +.. .-+....+.+++++.-++++
T Consensus 210 dDvgGAq~~GMrgilVkTGK~rpsDe~---k~~----~~p~~~~d~f~~AVd~I~q~ 259 (262)
T KOG3040|consen 210 DDVGGAQACGMRGILVKTGKFRPSDEE---KPP----VPPDLTADNFADAVDLIIQN 259 (262)
T ss_pred cchhhHhhhcceeEEeeccccCCcccc---cCC----CCcchhhhhHHHHHHHHHhh
Confidence 34566899998887777665443 22 111 11223577888888877654
No 307
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=37.69 E-value=2.2e+02 Score=23.14 Aligned_cols=92 Identities=13% Similarity=0.130 Sum_probs=52.0
Q ss_pred HHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCCCC---CcHHHHHHHh---cCCcEEEec-CCCC---Cccccc
Q 016648 224 LEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESET---LGLVVLEAMS---SGIPVVGVR-AGGI---PDIIPE 291 (385)
Q Consensus 224 l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~e~---~~~~~~Ea~a---~G~PvI~s~-~~~~---~e~~~~ 291 (385)
+.......+.......+.++....+. ..|++++-....+ .|..+++.+. ...|+|.-. .... .+.+
T Consensus 16 l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ls~~~~~~~~~~~~-- 93 (227)
T TIGR03787 16 YADALKRQGYQVTTYADRPSAMQAFRQRLPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIFLTARDSDFDTVSGL-- 93 (227)
T ss_pred HHHHHHHCCcEEEEecCHHHHHHHHHhCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHH--
Confidence 33343333433333333355554443 3577776544322 3555655554 357877542 2221 2233
Q ss_pred CCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 292 DQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 292 ~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
..|..+++..+.+.+++.+.+..++.
T Consensus 94 -~~Ga~~~l~kp~~~~~l~~~i~~~~~ 119 (227)
T TIGR03787 94 -RLGADDYLTKDISLPHLLARITALFR 119 (227)
T ss_pred -hcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 55777899999999999998887764
No 308
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=36.98 E-value=1.1e+02 Score=28.01 Aligned_cols=80 Identities=18% Similarity=0.178 Sum_probs=46.7
Q ss_pred HHHHHHHhCCCc-eEEEEeCCccHHHHHHHHc---CCCe--EEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHh
Q 016648 199 FLKRVMDRLPEA-RIAFIGDGPYREELEKMFT---GMPA--VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS 272 (385)
Q Consensus 199 ~l~~a~~~~~~~-~l~i~G~g~~~~~l~~~~~---~~~i--~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a 272 (385)
.+.+.+.+..+. ++.+.|... +.+++... ..++ .-...-+.+++.++++++|++|...-.......+--|+.
T Consensus 12 ~~~~~L~~~~~~~~v~va~r~~--~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~~~v~~~~i~ 89 (386)
T PF03435_consen 12 AIARLLARRGPFEEVTVADRNP--EKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFGEPVARACIE 89 (386)
T ss_dssp HHHHHHHCTTCE-EEEEEESSH--HHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcEEEEECCH--HHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchhHHHHHHHHH
Confidence 344555555555 788888554 34444443 2233 334444456799999999999986543322334555778
Q ss_pred cCCcEEEe
Q 016648 273 SGIPVVGV 280 (385)
Q Consensus 273 ~G~PvI~s 280 (385)
+|++.|-+
T Consensus 90 ~g~~yvD~ 97 (386)
T PF03435_consen 90 AGVHYVDT 97 (386)
T ss_dssp HT-EEEES
T ss_pred hCCCeecc
Confidence 89999863
No 309
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.73 E-value=80 Score=29.15 Aligned_cols=67 Identities=19% Similarity=0.331 Sum_probs=47.5
Q ss_pred HHhCcEEEEcCCCCC------CcHHHHHHHhcCCcEEEecCCCCC------cccccCCCCCeeEeeCCCCHHHHHHHHhH
Q 016648 248 YASGDVFVMPSESET------LGLVVLEAMSSGIPVVGVRAGGIP------DIIPEDQDGKIGYLFNPGDLDDCLSKLEP 315 (385)
Q Consensus 248 ~~~adi~v~ps~~e~------~~~~~~Ea~a~G~PvI~s~~~~~~------e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 315 (385)
|.--|+++.|...+- ..+.+.+.+.+..|+|.++-.... .+. +.|..|++-...+++++.+.+.+
T Consensus 10 ltfdDvll~P~~s~~~~~~vdl~t~lt~~l~l~iPIvsApMd~Vt~~~lA~AvA---~aGGlGvI~~~~~~e~l~~eI~~ 86 (404)
T PRK06843 10 LTFDDVSLIPRKSSVLPSEVSLKTQLTKNISLNIPFLSSAMDTVTESQMAIAIA---KEGGIGIIHKNMSIEAQRKEIEK 86 (404)
T ss_pred cCccceEEccCCCccCHHhccccchhhhccCCCCCEecCCCCCCCCHHHHHHHH---HCCCEEEecCCCCHHHHHHHHHH
Confidence 455688898876542 345677999999999987654432 122 55777877766789998888877
Q ss_pred hh
Q 016648 316 LL 317 (385)
Q Consensus 316 ll 317 (385)
+-
T Consensus 87 vk 88 (404)
T PRK06843 87 VK 88 (404)
T ss_pred HH
Confidence 64
No 310
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=36.65 E-value=1.1e+02 Score=25.59 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=48.5
Q ss_pred HHHHHHhC-CCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 200 LKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 200 l~~a~~~~-~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
+.+.++.- .++++.++-+.. .++.+.+.... +.....++.+++...|++|=....+..---+.+++-.|+++|
T Consensus 15 l~e~v~~~~~~~e~v~v~D~~-~ek~~~~~~~~-----~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~L~~g~d~i 88 (255)
T COG1712 15 LLELVRDGRVDFELVAVYDRD-EEKAKELEASV-----GRRCVSDIDELIAEVDLVVEAASPEAVREYVPKILKAGIDVI 88 (255)
T ss_pred HHHHHhcCCcceeEEEEecCC-HHHHHHHHhhc-----CCCccccHHHHhhccceeeeeCCHHHHHHHhHHHHhcCCCEE
Confidence 34444433 246666665433 23344433321 121226677778999999855544444444678899999999
Q ss_pred EecCCCCC
Q 016648 279 GVRAGGIP 286 (385)
Q Consensus 279 ~s~~~~~~ 286 (385)
.-.+|+..
T Consensus 89 V~SVGALa 96 (255)
T COG1712 89 VMSVGALA 96 (255)
T ss_pred EEechhcc
Confidence 88888765
No 311
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=36.60 E-value=2.4e+02 Score=23.08 Aligned_cols=105 Identities=14% Similarity=0.167 Sum_probs=56.4
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh-----cCCcEEEe-
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV- 280 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~s- 280 (385)
++.++.+.+. ...+.......+......-+.++....+.. .|++++-.. .+.-+..+++.+. ..+|+|.-
T Consensus 4 ~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi~ls 83 (229)
T PRK10161 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLT 83 (229)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEEEEE
Confidence 4555554432 223333333333333333333444444433 577776543 2334555565554 35677643
Q ss_pred cCCCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 281 RAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 281 ~~~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
+..... +.+ ..|..+++..+.+.+++.+.+..++.
T Consensus 84 ~~~~~~~~~~~~---~~Ga~~~l~kp~~~~~L~~~i~~~~~ 121 (229)
T PRK10161 84 ARGEEEDRVRGL---ETGADDYITKPFSPKELVARIKAVMR 121 (229)
T ss_pred CCCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 333222 223 55777899999999999988887754
No 312
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=36.49 E-value=67 Score=22.92 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=7.2
Q ss_pred cHHHHHHHhcCCcEEEec
Q 016648 264 GLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 264 ~~~~~Ea~a~G~PvI~s~ 281 (385)
+..+--|-..|+||+.++
T Consensus 75 ~~v~~la~~~~i~vi~t~ 92 (105)
T PF07085_consen 75 EEVLELAKELGIPVISTP 92 (105)
T ss_dssp HHHHHHHHHHT-EEEE-S
T ss_pred HHHHHHHHHCCCEEEEEC
Confidence 333334444455555544
No 313
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=36.32 E-value=1.3e+02 Score=23.19 Aligned_cols=72 Identities=17% Similarity=0.109 Sum_probs=43.4
Q ss_pred ChHHHHHHHHhCcEEEEcCC--CCCCcHHHHHHHhcCCcEEEe--cCCCCCcccccCCCC---CeeEeeCCCCHHHHHHH
Q 016648 240 LGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGV--RAGGIPDIIPEDQDG---KIGYLFNPGDLDDCLSK 312 (385)
Q Consensus 240 ~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s--~~~~~~e~~~~~~~~---~~g~~~~~~~~~~l~~~ 312 (385)
+.++..+++..||+++.+.. ..+.=-.+++....+.+++.. ..+..++.+. ..| ..|..+. |.+.+.+.
T Consensus 52 ~~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS~~~~P~~l~--~~Gv~~v~g~~v~--d~~~~~~~ 127 (147)
T PF04016_consen 52 PDEDAEEILPWADVVIITGSTLVNGTIDDILELARNAREVILYGPSAPLHPEALF--DYGVTYVGGSRVV--DPEKVLRA 127 (147)
T ss_dssp EGGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCCGGS-GGGGC--CTT-SEEEEEEES---HHHHHHH
T ss_pred CHHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecCchhhHHHHH--hCCCCEEEEEEEe--CHHHHHHH
Confidence 55788999999999998743 334444567666667777754 3345565551 112 2455544 88887777
Q ss_pred HhH
Q 016648 313 LEP 315 (385)
Q Consensus 313 i~~ 315 (385)
+.+
T Consensus 128 i~~ 130 (147)
T PF04016_consen 128 ISE 130 (147)
T ss_dssp HCT
T ss_pred HHc
Confidence 754
No 314
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.16 E-value=3.5e+02 Score=24.96 Aligned_cols=158 Identities=13% Similarity=0.204 Sum_probs=74.9
Q ss_pred EEEEEeeccccccHHHHHHHHHhC--CCceEEEEe-CCc------cHHHHHHH---HcCCCeEE-----ecccChHHHHH
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIG-DGP------YREELEKM---FTGMPAVF-----TGMLLGEELSQ 246 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G-~g~------~~~~l~~~---~~~~~i~~-----~g~~~~~~~~~ 246 (385)
.+=|.|+....+-.....+.++++ .++.++|+- +|. ..+++.+. +...+|.| +|.--.++...
T Consensus 156 ~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~a 235 (483)
T KOG0780|consen 156 RVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARA 235 (483)
T ss_pred CCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHH
Confidence 344555555555566666666655 356666654 222 11222221 12223433 22222233344
Q ss_pred HHHhCcE--EEEcCCCCC---CcHHHHHHHhcCCcEEEecCCCCCcccccCC-CCCeeEeeCCCCHHHHHHHHhHhhc-C
Q 016648 247 AYASGDV--FVMPSESET---LGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQ-DGKIGYLFNPGDLDDCLSKLEPLLY-N 319 (385)
Q Consensus 247 ~~~~adi--~v~ps~~e~---~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~-~~~~g~~~~~~~~~~l~~~i~~ll~-~ 319 (385)
+=...|+ +|++-. +| .|.++.--.+.++||+--..|..-+-+++.. ..-.+-+..-+|.+.|.+.+..+.. |
T Consensus 236 Fk~~vdvg~vIlTKl-DGhakGGgAlSaVaaTksPIiFIGtGEhmdDlE~F~pk~FvsrlLGmGDi~glvek~~ev~~~d 314 (483)
T KOG0780|consen 236 FKETVDVGAVILTKL-DGHAKGGGALSAVAATKSPIIFIGTGEHMDDLEPFDPKPFVSRLLGMGDIEGLVEKVQEVGKDD 314 (483)
T ss_pred HHHhhccceEEEEec-ccCCCCCceeeehhhhCCCEEEEecCccccccCCCChHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4445565 333322 21 2333444456799999766654433331100 0111223345689999999988872 2
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 320 QELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
.+ ++.++-.+ -+|+...+.+++-
T Consensus 315 ~~---el~~kl~~--gkFtlrd~y~Qfq 337 (483)
T KOG0780|consen 315 AK---ELVEKLKQ--GKFTLRDFYDQFQ 337 (483)
T ss_pred HH---HHHHHHHh--CCccHHHHHHHHH
Confidence 22 22221111 2588877777664
No 315
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=36.11 E-value=2.3e+02 Score=22.86 Aligned_cols=105 Identities=18% Similarity=0.235 Sum_probs=58.5
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCC-CCCcHHHHHHHhc-----CCcEEEe-
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMSS-----GIPVVGV- 280 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a~-----G~PvI~s- 280 (385)
+++++.+.+. ...+.......+..+...-+.++....+. ..|++++.... +..|..+++.+.. ..|+|.-
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~ii~ls 83 (226)
T TIGR02154 4 RILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINERGPDLILLDWMLPGTSGIELCRRLRRRPETRAIPIIMLT 83 (226)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhcCCCEEEEECCCCCCcHHHHHHHHHccccCCCCCEEEEe
Confidence 4555554432 23333333333333333333355555554 36787765432 3345666666642 4677653
Q ss_pred cCCCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 281 RAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 281 ~~~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
...... +.+ ..|..+++..+.+.+++.+++..++.
T Consensus 84 ~~~~~~~~~~~~---~~Ga~~~l~kp~~~~~l~~~i~~~~~ 121 (226)
T TIGR02154 84 ARGEEEDRVRGL---ETGADDYITKPFSPRELLARIKAVLR 121 (226)
T ss_pred cCCCHHHHHHHH---hcCcceEEeCCCCHHHHHHHHHHHhc
Confidence 332222 233 55777899999999999999988765
No 316
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=36.07 E-value=1.7e+02 Score=25.69 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=24.7
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 240 LGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 240 ~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
+.+++.+.++++|+++......-.+...++.|.-|.-+|
T Consensus 199 ~~~~l~~~l~~aDiVint~P~~ii~~~~l~~~k~~aliI 237 (287)
T TIGR02853 199 PLNKLEEKVAEIDIVINTIPALVLTADVLSKLPKHAVII 237 (287)
T ss_pred cHHHHHHHhccCCEEEECCChHHhCHHHHhcCCCCeEEE
Confidence 346788899999999986532223444556665554444
No 317
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=35.50 E-value=2.9e+02 Score=24.50 Aligned_cols=40 Identities=5% Similarity=0.039 Sum_probs=26.5
Q ss_pred eeEeeCCCCHHHHHHHHhHhhc--CHHHHHHHHHHHHHHHHh
Q 016648 297 IGYLFNPGDLDDCLSKLEPLLY--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 297 ~g~~~~~~~~~~l~~~i~~ll~--~~~~~~~~~~~a~~~~~~ 336 (385)
.-+..++.+...+++.|.+.+. +|+..+...+++..+.++
T Consensus 145 PHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 186 (311)
T PRK09545 145 MHIWLSPEIARATAVAIHDKLVELMPQSKAKLDANLKDFEAQ 186 (311)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHH
Confidence 3455566677777777777665 777766777777665433
No 318
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=35.50 E-value=35 Score=24.78 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=25.8
Q ss_pred HHHHHhCcEEEEcCCC-CCCcHHHHH---HHhcCCcEEEecCC
Q 016648 245 SQAYASGDVFVMPSES-ETLGLVVLE---AMSSGIPVVGVRAG 283 (385)
Q Consensus 245 ~~~~~~adi~v~ps~~-e~~~~~~~E---a~a~G~PvI~s~~~ 283 (385)
...+.+||++|..... ..-+.+.+| |.+.|+||++-...
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d 98 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTED 98 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcC
Confidence 4779999998875432 223445555 67889999976544
No 319
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=35.49 E-value=32 Score=14.51 Aligned_cols=11 Identities=36% Similarity=0.489 Sum_probs=8.1
Q ss_pred HHHHHHHhcCC
Q 016648 265 LVVLEAMSSGI 275 (385)
Q Consensus 265 ~~~~Ea~a~G~ 275 (385)
-+++||+..|.
T Consensus 4 dsllealqtg~ 14 (15)
T PF06345_consen 4 DSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHST
T ss_pred HHHHHHHHccC
Confidence 36788888775
No 320
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=35.38 E-value=2.2e+02 Score=24.28 Aligned_cols=106 Identities=15% Similarity=0.207 Sum_probs=56.2
Q ss_pred CCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeec--cccccHHHH--HHHHHhC-CCceEEEEeCCcc
Q 016648 146 AANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL--GVEKSLDFL--KRVMDRL-PEARIAFIGDGPY 220 (385)
Q Consensus 146 ~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~--~~~k~~~~l--~~a~~~~-~~~~l~i~G~g~~ 220 (385)
..++++++.|-.+.+ ++....+|-|.+ ...|+-..+ ..-++++ ..-.+++.|+...
T Consensus 130 ~~~Nv~VvSN~M~Fd-------------------~~g~l~gF~~~lIH~~NKn~~~l~~~~~~~~~~~R~NvlLlGDslg 190 (246)
T PF05822_consen 130 FHPNVKVVSNFMDFD-------------------EDGVLVGFKGPLIHTFNKNESALEDSPYFKQLKKRTNVLLLGDSLG 190 (246)
T ss_dssp -BTTEEEEEE-EEE--------------------TTSBEEEE-SS---TT-HHHHHHTTHHHHHCTTT--EEEEEESSSG
T ss_pred CCCCeEEEeeeEEEC-------------------CcceEeecCCCceEEeeCCcccccCchHHHHhccCCcEEEecCccC
Confidence 346799999976543 245667777765 334665444 2334455 3567999996543
Q ss_pred HHHHHHHH-cCCCeEEecccCh--H-HHHHHHHhCcEEEEcCCCCCCcHHHHHH
Q 016648 221 REELEKMF-TGMPAVFTGMLLG--E-ELSQAYASGDVFVMPSESETLGLVVLEA 270 (385)
Q Consensus 221 ~~~l~~~~-~~~~i~~~g~~~~--~-~~~~~~~~adi~v~ps~~e~~~~~~~Ea 270 (385)
.-.+..-. ...++.-.||+.. + .+..++..-|+++.--..-..+..+++.
T Consensus 191 D~~Ma~G~~~~~~~lkIGFLn~~ve~~l~~Y~~~yDIVlv~D~tm~v~~~il~~ 244 (246)
T PF05822_consen 191 DLHMADGVPDEENVLKIGFLNDKVEENLEKYLEAYDIVLVDDQTMDVPNAILQS 244 (246)
T ss_dssp GGGTTTT-S--SEEEEEEEE-SSHHHHHHHHHCCSSEEEET--B-HHHHHHHHH
T ss_pred ChHhhcCCCccccEEEEEecccCHHHHHHHHHhcCCEEEECCCCchHHHHHHHH
Confidence 22222222 2335677788754 3 4888899999999754333345555554
No 321
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=35.33 E-value=1.7e+02 Score=25.28 Aligned_cols=79 Identities=13% Similarity=0.200 Sum_probs=45.0
Q ss_pred HHHHHHHhCCCceEEEEeCCc-cHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcE
Q 016648 199 FLKRVMDRLPEARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 277 (385)
Q Consensus 199 ~l~~a~~~~~~~~l~i~G~g~-~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 277 (385)
.+++.+...+++++..+...+ ..+...+.... .+.....+ +++ -...|+++..+......--..+++..|++|
T Consensus 15 ~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~-~~~~~~d~--~~l---~~~~DvVve~t~~~~~~e~~~~aL~aGk~V 88 (265)
T PRK13303 15 AVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE-AVRVVSSV--DAL---PQRPDLVVECAGHAALKEHVVPILKAGIDC 88 (265)
T ss_pred HHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc-CCeeeCCH--HHh---ccCCCEEEECCCHHHHHHHHHHHHHcCCCE
Confidence 355666666777776655322 22222222211 23333322 443 356899987765444455678899999999
Q ss_pred EEecCC
Q 016648 278 VGVRAG 283 (385)
Q Consensus 278 I~s~~~ 283 (385)
++...+
T Consensus 89 vi~s~~ 94 (265)
T PRK13303 89 AVISVG 94 (265)
T ss_pred EEeChH
Confidence 986554
No 322
>PRK00232 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed
Probab=35.30 E-value=1.1e+02 Score=27.35 Aligned_cols=76 Identities=21% Similarity=0.290 Sum_probs=49.6
Q ss_pred CCeEEecccChHHHH--HHHHhCcEEEEcCCCCCC-cHHHHHH-----HhcCCcEEEe--cCCCCCcccccCCCCCeeEe
Q 016648 231 MPAVFTGMLLGEELS--QAYASGDVFVMPSESETL-GLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGYL 300 (385)
Q Consensus 231 ~~i~~~g~~~~~~~~--~~~~~adi~v~ps~~e~~-~~~~~Ea-----~a~G~PvI~s--~~~~~~e~~~~~~~~~~g~~ 300 (385)
.++...|++|.+.+. ....+.|++|.-+..-|. |.|++.. +..|+|+|-| |.|..-++. |. |
T Consensus 238 ~G~~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLPiiRTS~DHGTAfDIA-----Gk-g-- 309 (332)
T PRK00232 238 EGINLVGPLPADTLFQPAYLGDADAVLAMYHDQGLPVLKYLGFGRGVNITLGLPFIRTSVDHGTALDLA-----GK-G-- 309 (332)
T ss_pred CCCCcCCCCCchhhccccccCCCCEEEECcccccchhheecccCcceEEecCCCeeEeCCCCcchhhhh-----cC-C--
Confidence 367778999988764 334568999877664432 5555432 4569999955 455555655 22 2
Q ss_pred eCCCCHHHHHHHHhHh
Q 016648 301 FNPGDLDDCLSKLEPL 316 (385)
Q Consensus 301 ~~~~~~~~l~~~i~~l 316 (385)
--|+.++.++|.-.
T Consensus 310 --~A~~~S~~~Ai~lA 323 (332)
T PRK00232 310 --IADVGSFITALNLA 323 (332)
T ss_pred --CCCHHHHHHHHHHH
Confidence 22788999998765
No 323
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=34.47 E-value=2.5e+02 Score=22.69 Aligned_cols=99 Identities=19% Similarity=0.254 Sum_probs=50.6
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhC-CCceEEEEeCCccH-HHHHHHHcC-CCeEEecccChHHHHHHHHhC--cEEEE
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYR-EELEKMFTG-MPAVFTGMLLGEELSQAYASG--DVFVM 256 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~-~~~~l~i~G~g~~~-~~l~~~~~~-~~i~~~g~~~~~~~~~~~~~a--di~v~ 256 (385)
..+.+...+.++-.-...+++.+++- |+.++++....+.- +..++...+ ..+.+.+.=....+..+++.- |++|.
T Consensus 22 ~~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D~~~~~~rfl~~~~P~~~i~ 101 (186)
T PF04413_consen 22 PLIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLDFPWAVRRFLDHWRPDLLIW 101 (186)
T ss_dssp T-EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---SSHHHHHHHHHHH--SEEEE
T ss_pred CcEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCccCHHHHHHHHHHhCCCEEEE
Confidence 55667777777777777788877654 89999998754433 334443322 234443321123456666665 66665
Q ss_pred cCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 257 PSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 257 ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
.. .|-+|+-+.++-..|+|++.-|
T Consensus 102 ~E-tElWPnll~~a~~~~ip~~LvN 125 (186)
T PF04413_consen 102 VE-TELWPNLLREAKRRGIPVVLVN 125 (186)
T ss_dssp ES-----HHHHHH-----S-EEEEE
T ss_pred Ec-cccCHHHHHHHhhcCCCEEEEe
Confidence 44 5889999999999999999755
No 324
>PRK11579 putative oxidoreductase; Provisional
Probab=34.38 E-value=2.1e+02 Score=25.68 Aligned_cols=89 Identities=17% Similarity=0.150 Sum_probs=52.2
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE 259 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~ 259 (385)
+..++.+|--...+ .....++...+++++.-+.+.. .+...+. ...+.+ .+++.++++. .|+++..+.
T Consensus 4 ~irvgiiG~G~i~~--~~~~~~~~~~~~~~l~av~d~~-~~~~~~~--~~~~~~-----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 4 KIRVGLIGYGYASK--TFHAPLIAGTPGLELAAVSSSD-ATKVKAD--WPTVTV-----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred cceEEEECCCHHHH--HHHHHHHhhCCCCEEEEEECCC-HHHHHhh--CCCCce-----eCCHHHHhcCCCCCEEEEcCC
Confidence 35677777432222 2345667777888887665433 2222211 111211 2566667764 688887765
Q ss_pred CCCCcHHHHHHHhcCCcEEEe
Q 016648 260 SETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~PvI~s 280 (385)
...-.-.+.+|+..|++|++-
T Consensus 74 ~~~H~~~~~~al~aGkhVl~E 94 (346)
T PRK11579 74 NDTHFPLAKAALEAGKHVVVD 94 (346)
T ss_pred cHHHHHHHHHHHHCCCeEEEe
Confidence 544455678899999999974
No 325
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=34.37 E-value=1e+02 Score=20.71 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=29.8
Q ss_pred eEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 233 AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 233 i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
|.+...+...++.-.+..+. .+........+...+-|-.+|+|.|+.-
T Consensus 13 IlV~~~~~p~~~~~~~~~~~-Giv~~~Gg~~SH~aIlAr~~giP~ivg~ 60 (80)
T PF00391_consen 13 ILVAEELTPSDLALDLQRVA-GIVTEEGGPTSHAAILARELGIPAIVGV 60 (80)
T ss_dssp EEEESS--TTCHHSHHTTSS-EEEESSSSTTSHHHHHHHHTT-EEEEST
T ss_pred EEEECCCCHHHHhcchhheE-EEEEEcCCccchHHHHHHHcCCCEEEee
Confidence 77777777777772233344 4444444556777888999999999754
No 326
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=34.20 E-value=2.5e+02 Score=22.63 Aligned_cols=108 Identities=17% Similarity=0.191 Sum_probs=56.2
Q ss_pred eEEEEeCCc-cHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEec-C
Q 016648 211 RIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVR-A 282 (385)
Q Consensus 211 ~l~i~G~g~-~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s~-~ 282 (385)
++.++.+.+ ....+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. ...|+|... .
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~ls~~ 81 (222)
T PRK10643 2 KILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESGHYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLILTAR 81 (222)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEECC
Confidence 344555432 2233444443333333322233455555443 577766433 2334555555554 357777543 2
Q ss_pred CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 283 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 283 ~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
............|..+++..+.+.+++.+.+..++.
T Consensus 82 ~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 82 DTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred CCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 222211111155777899999999999998887764
No 327
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=33.98 E-value=39 Score=24.66 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=28.9
Q ss_pred HHHHHHH--hCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCC
Q 016648 243 ELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 285 (385)
Q Consensus 243 ~~~~~~~--~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~ 285 (385)
++.+++. ..|++|=.+..+....-+.+++..|+.||+.+.+..
T Consensus 50 ~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~nk~al 94 (117)
T PF03447_consen 50 DLEELIDDPDIDVVVECTSSEAVAEYYEKALERGKHVVTANKGAL 94 (117)
T ss_dssp SHHHHHTHTT-SEEEE-SSCHHHHHHHHHHHHTTCEEEES-HHHH
T ss_pred CHHHHhcCcCCCEEEECCCchHHHHHHHHHHHCCCeEEEECHHHh
Confidence 4455555 799999765555555667899999999998765543
No 328
>KOG2555 consensus AICAR transformylase/IMP cyclohydrolase/methylglyoxal synthase [Nucleotide transport and metabolism]
Probab=33.77 E-value=1.2e+02 Score=27.88 Aligned_cols=75 Identities=19% Similarity=0.179 Sum_probs=51.5
Q ss_pred ceEEEEe---CCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcC-CCCCCcHHHHHHHhcCCcEEEecCCCC
Q 016648 210 ARIAFIG---DGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS-ESETLGLVVLEAMSSGIPVVGVRAGGI 285 (385)
Q Consensus 210 ~~l~i~G---~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps-~~e~~~~~~~Ea~a~G~PvI~s~~~~~ 285 (385)
+.+.+.| .+++..+.+....+ ....++.+|-.+++..+.-+.+.| .+-.|+-.+.+|..+|+-.|+.+.|..
T Consensus 487 id~~v~g~~~e~~~~~~~~~~fe~----~p~~~t~~e~~ewl~~l~~v~l~SDAFFPF~Dnv~ra~qsGv~yiaaP~GSv 562 (588)
T KOG2555|consen 487 IDLYVTGTVGEDPELSQWESKFEE----VPEPLTKEERKEWLEKLKGVSLSSDAFFPFPDNVYRAVQSGVKYIAAPSGSV 562 (588)
T ss_pred hhhhcccccccCcchhhhhhhhhh----cccccChHHHHHHHHHhcCceecccccccCchHHHHHHhcCCeEEecCCCcc
Confidence 4455544 55555555555543 334555677788888776544444 366889999999999999999988876
Q ss_pred Ccc
Q 016648 286 PDI 288 (385)
Q Consensus 286 ~e~ 288 (385)
.+-
T Consensus 563 ~D~ 565 (588)
T KOG2555|consen 563 MDK 565 (588)
T ss_pred hhH
Confidence 554
No 329
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=33.58 E-value=2.2e+02 Score=22.59 Aligned_cols=85 Identities=15% Similarity=0.205 Sum_probs=46.0
Q ss_pred HhCcEEEEcCCCCCCcHHHHHH-HhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHH
Q 016648 249 ASGDVFVMPSESETLGLVVLEA-MSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 327 (385)
Q Consensus 249 ~~adi~v~ps~~e~~~~~~~Ea-~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 327 (385)
-.||+++.|....--. || ..+|+-||+-|...+.... +...- - =++.+..++-.+..--...+.+.
T Consensus 88 y~ADVVLVPLEDGDR~----EAL~~mGK~VIaIDLNPLSRTa---r~Ati-t-----IVDni~RA~p~~~~~~~~lk~~~ 154 (178)
T PF02006_consen 88 YSADVVLVPLEDGDRT----EALVKMGKTVIAIDLNPLSRTA---RTATI-T-----IVDNITRAIPNMIEFARELKKKD 154 (178)
T ss_pred eeccEEEeccCCCcHH----HHHHHcCCeEEEEeCCCccccc---ccCce-e-----eehhHHHHHHHHHHHHHHHhcCC
Confidence 4799999997642222 33 3589999999987766554 22211 1 23456666655544322222222
Q ss_pred -HHHHHHHHhCCHHHHHHHH
Q 016648 328 -QAARQEMEKYDWRAATRTI 346 (385)
Q Consensus 328 -~~a~~~~~~~s~~~~~~~~ 346 (385)
....+.++.|+-+.....-
T Consensus 155 ~~el~~iv~~~dN~~~L~~a 174 (178)
T PF02006_consen 155 REELEEIVKNYDNKKNLSEA 174 (178)
T ss_pred HHHHHHHHHhcCcHHHHHHH
Confidence 2233334667766555443
No 330
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=33.45 E-value=1.8e+02 Score=25.35 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCCceEEEE-eCCcc-HHHHHHHHcCCCeEEecccCh-HHHHHHHHh-Cc-EEEEcCCCCCCcHHHHHHH
Q 016648 197 LDFLKRVMDRLPEARIAFI-GDGPY-REELEKMFTGMPAVFTGMLLG-EELSQAYAS-GD-VFVMPSESETLGLVVLEAM 271 (385)
Q Consensus 197 ~~~l~~a~~~~~~~~l~i~-G~g~~-~~~l~~~~~~~~i~~~g~~~~-~~~~~~~~~-ad-i~v~ps~~e~~~~~~~Ea~ 271 (385)
-..+.+++.. ++++|+=. .++.. .+.+..+.. ..+.++|+-.. .++..++.. +| ++|=-|..+..-..+--+.
T Consensus 13 G~~v~~av~~-~~~~Lv~~~~~~~~~~~~~~~~~g-~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT~P~~~~~n~~~~~ 90 (275)
T TIGR02130 13 GKAVAEAADA-AGLEIVPTSFGGEEEAENEAEVAG-KEILLHGPSEREARIGEVFAKYPELICIDYTHPSAVNDNAAFYG 90 (275)
T ss_pred HHHHHHHHhc-CCCEEEeeEccccccccchhhhcc-cceeeeccccccccHHHHHhhcCCEEEEECCChHHHHHHHHHHH
Confidence 3466677776 77776643 22221 112222221 15666543332 567777777 89 7776565444444566788
Q ss_pred hcCCcEEEecCCCCCcccccC-CCCCeeEeeCCC
Q 016648 272 SSGIPVVGVRAGGIPDIIPED-QDGKIGYLFNPG 304 (385)
Q Consensus 272 a~G~PvI~s~~~~~~e~~~~~-~~~~~g~~~~~~ 304 (385)
..|+|+|.-..|...+.+... +....+.++.++
T Consensus 91 ~~gv~~ViGTTG~~~~~~~~l~~~~~i~~l~apN 124 (275)
T TIGR02130 91 KHGIPFVMGTTGGDREALAKLVADAKHPAVIAPN 124 (275)
T ss_pred HCCCCEEEcCCCCCHHHHHHHHHhcCCCEEEECc
Confidence 899999987666544333110 122345555553
No 331
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=33.30 E-value=1.3e+02 Score=21.44 Aligned_cols=70 Identities=10% Similarity=0.030 Sum_probs=38.7
Q ss_pred EEEeCCcc----HHHHHHHHcCCCeEE-ecccChHHHHHHHHhCcEEEEcCCC-CCCcHHHHHHHhcCCcEEEecC
Q 016648 213 AFIGDGPY----REELEKMFTGMPAVF-TGMLLGEELSQAYASGDVFVMPSES-ETLGLVVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 213 ~i~G~g~~----~~~l~~~~~~~~i~~-~g~~~~~~~~~~~~~adi~v~ps~~-e~~~~~~~Ea~a~G~PvI~s~~ 282 (385)
+++|.|.. .+++++.+++.++.+ .--.+..++...+..+|+++..... .-+...--.+-..|+||...+.
T Consensus 5 l~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I~~ 80 (99)
T cd05565 5 VLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYDLVILAPQMASYYDELKKDTDRLGIKLVTTTG 80 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEeCH
Confidence 44555543 345666665554321 2244457888899999988765431 1112112223455889987653
No 332
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=33.13 E-value=1e+02 Score=24.09 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=33.7
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecC
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 97 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 97 (385)
.+...+.+.+++.+||+|++.......-.+..++.+.+.|++..+.+.
T Consensus 77 ~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v~~l 124 (164)
T PF01012_consen 77 AYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDVTDL 124 (164)
T ss_dssp HHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceEEEE
Confidence 356678889999999999997653333345556778899998877764
No 333
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=32.79 E-value=2.8e+02 Score=22.98 Aligned_cols=69 Identities=17% Similarity=0.136 Sum_probs=41.2
Q ss_pred ceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHh-c-CCcEEEecCC
Q 016648 210 ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMS-S-GIPVVGVRAG 283 (385)
Q Consensus 210 ~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a-~-G~PvI~s~~~ 283 (385)
.+++|.+. ...+.++......... +..-+..+..+.+|++++.-.++..+.++-|.-. . |+-||-..++
T Consensus 25 ~eV~igs~-r~~~~~~a~a~~l~~~----i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~~~~~~KIvID~tnp 95 (211)
T COG2085 25 HEVIIGSS-RGPKALAAAAAALGPL----ITGGSNEDAAALADVVVLAVPFEAIPDVLAELRDALGGKIVIDATNP 95 (211)
T ss_pred CeEEEecC-CChhHHHHHHHhhccc----cccCChHHHHhcCCEEEEeccHHHHHhHHHHHHHHhCCeEEEecCCC
Confidence 45555443 3334444444433333 3334566778899999988777777766655442 3 6888876665
No 334
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=32.65 E-value=1.7e+02 Score=23.48 Aligned_cols=49 Identities=16% Similarity=0.087 Sum_probs=32.6
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCC-EEEEEecCCCc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVPV 100 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~ 100 (385)
...+.+...+.+||+|++..........++.+...|.+ ++.++|...+.
T Consensus 89 ~~~~l~~~lR~~pd~i~igEir~~ea~~~~~a~~tGh~g~~~T~Ha~s~~ 138 (186)
T cd01130 89 MADLLRSALRMRPDRIIVGEVRGGEALDLLQAMNTGHPGGMTTIHANSAE 138 (186)
T ss_pred HHHHHHHHhccCCCEEEEEccCcHHHHHHHHHHhcCCCCceeeecCCCHH
Confidence 45666667778999999985422222233344578888 99999996543
No 335
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=32.61 E-value=1.4e+02 Score=19.30 Aligned_cols=64 Identities=19% Similarity=0.268 Sum_probs=37.2
Q ss_pred CCceEEEEe-CCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 208 PEARIAFIG-DGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 208 ~~~~l~i~G-~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
.+..+.+.| .....+.+.+++...+-.+.... -..++.+|.... .....+..++...|+|+|..
T Consensus 7 ~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~--------~~~~thvI~~~~-~~~~~k~~~~~~~~i~iV~~ 71 (78)
T PF00533_consen 7 EGCTFCISGFDSDEREELEQLIKKHGGTVSNSF--------SKKTTHVIVGNP-NKRTKKYKAAIANGIPIVSP 71 (78)
T ss_dssp TTEEEEESSTSSSHHHHHHHHHHHTTEEEESSS--------STTSSEEEESSS-HCCCHHHHHHHHTTSEEEET
T ss_pred CCEEEEEccCCCCCHHHHHHHHHHcCCEEEeec--------ccCcEEEEeCCC-CCccHHHHHHHHCCCeEecH
Confidence 455666633 33445666666666555443333 334555554432 23466788889999999864
No 336
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=32.44 E-value=3e+02 Score=24.08 Aligned_cols=78 Identities=10% Similarity=0.194 Sum_probs=47.3
Q ss_pred HHHHHHHHhC----CCceEEEEeCCcc-HHHHHHHHcCCC--eEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHH
Q 016648 198 DFLKRVMDRL----PEARIAFIGDGPY-REELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 270 (385)
Q Consensus 198 ~~l~~a~~~~----~~~~l~i~G~g~~-~~~l~~~~~~~~--i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea 270 (385)
...++.++.+ .+-++.++|.+.. -.-+..+....+ |+..-.- ..++.+..++||++|...-..++ .--|.
T Consensus 143 ~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-t~~l~~~~~~ADIVV~avG~~~~--i~~~~ 219 (285)
T PRK14189 143 YGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-TRDLAAHTRQADIVVAAVGKRNV--LTADM 219 (285)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-CCCHHHHhhhCCEEEEcCCCcCc--cCHHH
Confidence 3444555544 5678999997664 334444444333 4333222 25799999999999987654433 22377
Q ss_pred HhcCCcEE
Q 016648 271 MSSGIPVV 278 (385)
Q Consensus 271 ~a~G~PvI 278 (385)
+--|.-||
T Consensus 220 ik~gavVI 227 (285)
T PRK14189 220 VKPGATVI 227 (285)
T ss_pred cCCCCEEE
Confidence 77786555
No 337
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=32.30 E-value=3.2e+02 Score=23.54 Aligned_cols=79 Identities=15% Similarity=0.127 Sum_probs=44.7
Q ss_pred HHHHHHhCC-CceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 200 LKRVMDRLP-EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 200 l~~a~~~~~-~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
+.+.+...+ ++++..+-+. ..+..+......++... +++.+++..+|+++..+..+...--..+++..|+.++
T Consensus 16 ia~~l~~~~~~~elv~v~d~-~~~~a~~~a~~~~~~~~-----~~~~ell~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vv 89 (265)
T PRK13304 16 ITKAILSGRINAELYAFYDR-NLEKAENLASKTGAKAC-----LSIDELVEDVDLVVECASVNAVEEVVPKSLENGKDVI 89 (265)
T ss_pred HHHHHHcCCCCeEEEEEECC-CHHHHHHHHHhcCCeeE-----CCHHHHhcCCCEEEEcCChHHHHHHHHHHHHcCCCEE
Confidence 444444432 4555443332 33444444443333221 3445556889999987655555555677889999998
Q ss_pred EecCCC
Q 016648 279 GVRAGG 284 (385)
Q Consensus 279 ~s~~~~ 284 (385)
+...+.
T Consensus 90 v~s~gA 95 (265)
T PRK13304 90 IMSVGA 95 (265)
T ss_pred EEchHH
Confidence 865543
No 338
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=32.28 E-value=1.1e+02 Score=22.19 Aligned_cols=42 Identities=10% Similarity=-0.061 Sum_probs=30.7
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 92 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~ 92 (385)
.+..+.+.+...++|+|++..+...-......+...|+++++
T Consensus 50 ~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 50 VYTDLEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp EESSHHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEE
T ss_pred chhHHHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEE
Confidence 444577888888999999998866555555566667886665
No 339
>PRK07579 hypothetical protein; Provisional
Probab=32.23 E-value=1.2e+02 Score=25.79 Aligned_cols=33 Identities=6% Similarity=0.070 Sum_probs=19.6
Q ss_pred EEEEEeeccccccHHHHHHHHHhCCCceEEEEeCC
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDG 218 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g 218 (385)
.|+++|. ..-+...+...+.+-.+..+.+++.+
T Consensus 3 ~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (245)
T PRK07579 3 TILVLTD--NVHAHALAVDLIARKNDMDVDYFCSF 35 (245)
T ss_pred eEEEEcc--cHHHHHHHHHHHhhccCcceEEEEec
Confidence 3566662 33455666666666667777776643
No 340
>PHA00451 protein kinase
Probab=32.17 E-value=1.9e+02 Score=24.94 Aligned_cols=39 Identities=21% Similarity=0.380 Sum_probs=26.3
Q ss_pred hcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 272 SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 272 a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
-.|+|+|+-+++.-.+- +.+.|+ +-|+++|...++.+..
T Consensus 204 ~~g~p~ITDPVSFS~dr-----~re~GF---~ldPd~LiaEvEaia~ 242 (362)
T PHA00451 204 QDGVPYITDPVSFSHDR-----EREPGF---PLDPDELIAEVEAIAN 242 (362)
T ss_pred CCCCeEecCCccccCcc-----ccCCCC---CCCHHHHHHHHHHHHH
Confidence 35899998777654442 344554 3488999988887754
No 341
>COG3613 Nucleoside 2-deoxyribosyltransferase [Nucleotide transport and metabolism]
Probab=32.07 E-value=92 Score=24.69 Aligned_cols=38 Identities=18% Similarity=0.237 Sum_probs=25.9
Q ss_pred HHHHHhCcEEEEc---CCCCCCcHHHHH---HHhcCCcEEEecC
Q 016648 245 SQAYASGDVFVMP---SESETLGLVVLE---AMSSGIPVVGVRA 282 (385)
Q Consensus 245 ~~~~~~adi~v~p---s~~e~~~~~~~E---a~a~G~PvI~s~~ 282 (385)
...+.+||++|.- -+.+.=+.+..| |.|.|+||++...
T Consensus 63 ~~~i~~aD~vla~ld~fr~~~DsGTa~E~GYa~AlgKPv~~~~~ 106 (172)
T COG3613 63 IKLIDQADIVLANLDPFRPDPDSGTAFELGYAIALGKPVYAYRK 106 (172)
T ss_pred HHHHhhcCEEEEecCCCCCCCCCcchHHHHHHHHcCCceEEEee
Confidence 4678899998863 333333555555 6889999998753
No 342
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function.
Probab=31.59 E-value=2.4e+02 Score=21.68 Aligned_cols=57 Identities=11% Similarity=0.061 Sum_probs=37.7
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhC-CCceEEEEeCCccHHHHHHHHcC-CCeEEec
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTG-MPAVFTG 237 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~-~~~~l~i~G~g~~~~~l~~~~~~-~~i~~~g 237 (385)
..++++...+-+.......++..+++. |+-++++.|=|-....++.+... .++.+..
T Consensus 60 ~~vvfVSa~S~~h~~~~~~~i~si~~~~P~~k~ilY~LgL~~~~i~~L~~~~~n~evr~ 118 (142)
T PF07801_consen 60 SDVVFVSATSDNHFNESMKSISSIRKFYPNHKIILYDLGLSEEQIKKLKKNFCNVEVRK 118 (142)
T ss_pred CccEEEEEecchHHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHhcCCceEEEE
Confidence 344555554445555566666666654 99999999988777777777664 5655543
No 343
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=31.57 E-value=1.7e+02 Score=26.26 Aligned_cols=49 Identities=22% Similarity=0.386 Sum_probs=33.5
Q ss_pred chHHHHHHhhccCCCEEEeC---CCchhHHHHH----HHHHHhCCCEEEEEecCCC
Q 016648 51 LSPRIISEVARFKPDIIHAS---SPGIMVFGAL----IIAKLLCVPIVMSYHTHVP 99 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~---~~~~~~~~~~----~~~~~~~~p~v~~~h~~~~ 99 (385)
...++...+++.+||++++- +.+-++.++. ......++|++..++.-.|
T Consensus 68 a~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vtaM~~ENp 123 (349)
T PF07355_consen 68 ALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTAMYEENP 123 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEEecccCh
Confidence 46788999999999999995 2223333322 2345689999987766433
No 344
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=31.52 E-value=1.9e+02 Score=25.75 Aligned_cols=49 Identities=14% Similarity=0.041 Sum_probs=33.5
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCC-EEEEEecCCCc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVPV 100 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~ 100 (385)
...+.+..-+.+||.|++-.....-...++.+...|.+ .+.|+|...+.
T Consensus 208 ~~~ll~~aLR~~PD~IivGEiR~~Ea~~~l~A~~tGh~G~~tTiHa~s~~ 257 (319)
T PRK13894 208 MTALLKTTLRMRPDRILVGEVRGPEALDLLMAWNTGHEGGAATLHANNAK 257 (319)
T ss_pred HHHHHHHHhcCCCCEEEEeccCCHHHHHHHHHHHcCCCceEEEECCCCHH
Confidence 45666777789999999976522222234456667887 78999996543
No 345
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=31.45 E-value=2.3e+02 Score=23.33 Aligned_cols=100 Identities=23% Similarity=0.241 Sum_probs=49.6
Q ss_pred CCcEEEEEeeccccccHHHHH--HHHHhC-CCceEEEEeCCcc--HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEE
Q 016648 181 DKPLIVHVGRLGVEKSLDFLK--RVMDRL-PEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 255 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~--~a~~~~-~~~~l~i~G~g~~--~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v 255 (385)
...++++.|.-+. |-|-++ +.+... .++.++..|+... .+.........++- +.+...+.......+|++|
T Consensus 49 ~~~v~vlcG~GnN--GGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~~~a~~~~~~l~~~--~~v~~~~~~~~~~~~dvIV 124 (203)
T COG0062 49 ARRVLVLCGPGNN--GGDGLVAARHLKAAGYAVTVLLLGDPKKLKTEAARANLKSLGIG--GVVKIKELEDEPESADVIV 124 (203)
T ss_pred CCEEEEEECCCCc--cHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHhhcCC--cceeecccccccccCCEEE
Confidence 3456777775433 333333 223322 4677888885441 12222221111221 1111122222677899988
Q ss_pred EcCCCCCC------c-HHHHHHHh-cCCcEEEecCCC
Q 016648 256 MPSESETL------G-LVVLEAMS-SGIPVVGVRAGG 284 (385)
Q Consensus 256 ~ps~~e~~------~-~~~~Ea~a-~G~PvI~s~~~~ 284 (385)
=.-..-|+ | -+++|.+. .|+|+|+-|.++
T Consensus 125 DalfG~G~~g~lrep~a~~Ie~iN~~~~pivAVDiPS 161 (203)
T COG0062 125 DALFGTGLSGPLREPFASLIEAINASGKPIVAVDIPS 161 (203)
T ss_pred EeceecCCCCCCccHHHHHHHHHHhcCCceEEEeCCC
Confidence 54332222 1 24556655 899999998764
No 346
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=31.29 E-value=3e+02 Score=22.67 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=58.3
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEecC
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVRA 282 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s~~ 282 (385)
.+++++.+.+. ...+.......+......-+.++....+.. .|++++-.. .+..|..+++.+. .+.|+|....
T Consensus 6 ~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ls~ 85 (239)
T PRK09468 6 YKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRESFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIMLTA 85 (239)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEC
Confidence 45566664432 233444443333333333333555555543 577776433 3334556666554 3578875432
Q ss_pred -CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 283 -GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 283 -~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
............|..+++..|.+.+++...+..++.
T Consensus 86 ~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 86 KGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred CCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 222211111145667788899999999999988765
No 347
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=31.07 E-value=3.5e+02 Score=23.41 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=28.2
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEec
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHT 96 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 96 (385)
.++.+..+++-.+||+|..+...+-.+. .+.|+...-.+++.|.
T Consensus 118 RMrAv~H~i~l~sPdiiflQEV~p~~y~--~~~K~~s~y~i~~~~~ 161 (349)
T KOG2756|consen 118 RMRAVCHYLALYSPDVIFLQEVIPPYYS--YLKKRSSNYEIITGHE 161 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEeecCchhhH--HHHHhhhheeEEEecc
Confidence 3677888999999999999875332222 2344444445555555
No 348
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=31.01 E-value=3e+02 Score=22.66 Aligned_cols=44 Identities=23% Similarity=0.345 Sum_probs=29.7
Q ss_pred hHHHHHHHHhCcEEEEcCCC----------CCCcHHHHHHHhcCCcEEEecCCC
Q 016648 241 GEELSQAYASGDVFVMPSES----------ETLGLVVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 241 ~~~~~~~~~~adi~v~ps~~----------e~~~~~~~Ea~a~G~PvI~s~~~~ 284 (385)
.++..+.+.+||++++|--. -++-..+-++...|+|++.+..|.
T Consensus 71 ~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa 124 (212)
T cd03146 71 TEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWSAGS 124 (212)
T ss_pred cccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhH
Confidence 35667888899998888521 123344556677899999876553
No 349
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=30.97 E-value=2.7e+02 Score=22.37 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=27.0
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCcH--HHHHHHh------cCCcEEEecCCC
Q 016648 242 EELSQAYASGDVFVMPSESETLGL--VVLEAMS------SGIPVVGVRAGG 284 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~~e~~~~--~~~Ea~a------~G~PvI~s~~~~ 284 (385)
+....++..||++|.-. .|+|+ =++|++. .++|++..+..+
T Consensus 88 ~Rk~~m~~~sda~I~lP--GG~GTL~El~e~~~~~qlg~~~kPiil~n~~g 136 (178)
T TIGR00730 88 ERKAMMAELADAFIAMP--GGFGTLEELFEVLTWAQLGIHQKPIILFNVNG 136 (178)
T ss_pred HHHHHHHHhCCEEEEcC--CCcchHHHHHHHHHHHHcCCCCCCEEEECCcc
Confidence 44556788899987543 23443 2666764 489999887543
No 350
>PRK01909 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Validated
Probab=30.74 E-value=1.5e+02 Score=26.56 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=48.8
Q ss_pred CCeEEecccChHHHH--HHHHhCcEEEEcCCCCCC-cHHHHHH-----HhcCCcEEEe--cCCCCCcccccCCCCCeeEe
Q 016648 231 MPAVFTGMLLGEELS--QAYASGDVFVMPSESETL-GLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQDGKIGYL 300 (385)
Q Consensus 231 ~~i~~~g~~~~~~~~--~~~~~adi~v~ps~~e~~-~~~~~Ea-----~a~G~PvI~s--~~~~~~e~~~~~~~~~~g~~ 300 (385)
.++...|++|.+.+. ......|++|.-+..-|. |.|++.. +..|+|+|-| |.|..-++. |. |.
T Consensus 234 ~Gi~v~GP~paDt~F~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIA-----Gk-g~- 306 (329)
T PRK01909 234 AGIDARGPYPADTLFQPRYLEDADCVLAMFHDQGLPVLKYATFGEGINVTLGLPIIRTSVDHGTALDLA-----GT-GR- 306 (329)
T ss_pred CCCCccCCCCchhhcccccccCCCEEEEccccccchhheecccCcceEEecCCCeeEeCCCCcchhhhh-----cC-CC-
Confidence 367788999988764 334568999877654332 4444432 3469999955 455555655 22 21
Q ss_pred eCCCCHHHHHHHHhHh
Q 016648 301 FNPGDLDDCLSKLEPL 316 (385)
Q Consensus 301 ~~~~~~~~l~~~i~~l 316 (385)
-|+.++.++|.-.
T Consensus 307 ---A~~~S~~~Ai~lA 319 (329)
T PRK01909 307 ---ADPGSMIAAIDTA 319 (329)
T ss_pred ---CCHHHHHHHHHHH
Confidence 2788999988765
No 351
>PRK02746 pdxA 4-hydroxythreonine-4-phosphate dehydrogenase; Provisional
Probab=30.69 E-value=3.7e+02 Score=24.33 Aligned_cols=75 Identities=15% Similarity=0.187 Sum_probs=48.8
Q ss_pred CeEEecccChHHHHHHH----------HhCcEEEEcCCCCCC-cHHHHHH-----HhcCCcEEEe--cCCCCCcccccCC
Q 016648 232 PAVFTGMLLGEELSQAY----------ASGDVFVMPSESETL-GLVVLEA-----MSSGIPVVGV--RAGGIPDIIPEDQ 293 (385)
Q Consensus 232 ~i~~~g~~~~~~~~~~~----------~~adi~v~ps~~e~~-~~~~~Ea-----~a~G~PvI~s--~~~~~~e~~~~~~ 293 (385)
++...|++|.+.+..-- ...|++|.-+..-|. |.|++.. +..|+|+|-| |.|..-++.
T Consensus 244 g~~v~GP~paDt~F~~~~~~~~~~~~~~~~D~vvaMYHDQGliP~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIA---- 319 (345)
T PRK02746 244 DIQLLGPIPPDTCWVSPAQAWYGKGVAEAPDGYLALYHDQGLIPVKLMAFDRAVNTTIGLPFIRTSPDHGTAFDIA---- 319 (345)
T ss_pred CceeeCCCCchhhccccccccccccccCCCCEEEECcccCCChhheeeccCcceEEecCCCeeEeCCCCcchhhhh----
Confidence 48899999988764332 568999877664332 4444422 4569999955 455555655
Q ss_pred CCCeeEeeCCCCHHHHHHHHhHh
Q 016648 294 DGKIGYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 294 ~~~~g~~~~~~~~~~l~~~i~~l 316 (385)
|. | --|+.++.++|.-.
T Consensus 320 -Gk-g----~A~~~S~~~Ai~lA 336 (345)
T PRK02746 320 -GK-G----IARPQSMKAAIKLA 336 (345)
T ss_pred -cC-C----CCCHHHHHHHHHHH
Confidence 22 2 22788999988765
No 352
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=30.49 E-value=1.8e+02 Score=25.85 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=82.5
Q ss_pred HHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCC-CCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccH
Q 016648 119 KFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVD-SESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSL 197 (385)
Q Consensus 119 ~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~ 197 (385)
++.-..-|.++..+....+.+.+... .+-++.-++. ......... ...++. .+.-+.... .+
T Consensus 83 ql~~~~~dviv~i~tp~Aq~~~s~~~----~iPVV~aavtd~v~a~Lv~~---------~~~pg~-NvTGvsD~~---~v 145 (322)
T COG2984 83 QLVGDKPDVIVAIATPAAQALVSATK----TIPVVFAAVTDPVGAKLVKS---------LEQPGG-NVTGVSDLL---PV 145 (322)
T ss_pred HhhcCCCcEEEecCCHHHHHHHHhcC----CCCEEEEccCchhhccCCcc---------ccCCCC-ceeecCCcc---hH
Confidence 34445678888888888888877643 1334443442 221111100 001111 122222221 35
Q ss_pred HHHHHHHHhC-CCceE--EEEeCCc-----cHHHHHHHHcCCCeEEecc-c-ChHHHHH----HHHhCcEEEEcCC---C
Q 016648 198 DFLKRVMDRL-PEARI--AFIGDGP-----YREELEKMFTGMPAVFTGM-L-LGEELSQ----AYASGDVFVMPSE---S 260 (385)
Q Consensus 198 ~~l~~a~~~~-~~~~l--~i~G~g~-----~~~~l~~~~~~~~i~~~g~-~-~~~~~~~----~~~~adi~v~ps~---~ 260 (385)
+.-+++++.+ |+++= ++++.++ ..+++++.++..++.+... + +-.|+.. +....|++..|.. .
T Consensus 146 ~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~ 225 (322)
T COG2984 146 AQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIV 225 (322)
T ss_pred HHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHHH
Confidence 5556666655 77753 3555554 3456666666666544332 1 2244443 3466799888854 2
Q ss_pred CCCcHHHHHHHhcCCcEEEecCCCC
Q 016648 261 ETLGLVVLEAMSSGIPVVGVRAGGI 285 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s~~~~~ 285 (385)
.++...+-+|...++|+++++.+..
T Consensus 226 s~~~~l~~~a~~~kiPli~sd~~~V 250 (322)
T COG2984 226 SAIESLLQVANKAKIPLIASDTSSV 250 (322)
T ss_pred HHHHHHHHHHHHhCCCeecCCHHHH
Confidence 3566778899999999999986543
No 353
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=30.40 E-value=1.3e+02 Score=25.45 Aligned_cols=48 Identities=15% Similarity=0.163 Sum_probs=35.2
Q ss_pred HHHHHHhhccCCCEEEeCCCchhH-HHHHHHHHHhCCCEEEEEecCCCc
Q 016648 53 PRIISEVARFKPDIIHASSPGIMV-FGALIIAKLLCVPIVMSYHTHVPV 100 (385)
Q Consensus 53 ~~l~~~i~~~~pDiI~~~~~~~~~-~~~~~~~~~~~~p~v~~~h~~~~~ 100 (385)
.-+...++...|+|+++...+... ..+++-+...|++++.+.|++.-.
T Consensus 208 ~gmmmaIrsm~PEViIvDEIGt~~d~~A~~ta~~~GVkli~TaHG~~ie 256 (308)
T COG3854 208 EGMMMAIRSMSPEVIIVDEIGTEEDALAILTALHAGVKLITTAHGNGIE 256 (308)
T ss_pred HHHHHHHHhcCCcEEEEeccccHHHHHHHHHHHhcCcEEEEeeccccHH
Confidence 346677889999999998764332 334455566899999999997543
No 354
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=30.30 E-value=1.6e+02 Score=25.90 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=34.1
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCC-EEEEEecCCCc
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVPV 100 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~ 100 (385)
-+..+.+..-+.+||.|++-.....-...++.+...|.+ .+.|+|...+.
T Consensus 192 ~~~~~l~~aLR~~pD~iivGEiR~~ea~~~l~a~~tGh~G~~tTiHa~~~~ 242 (299)
T TIGR02782 192 SMTRLLKATLRLRPDRIIVGEVRGGEALDLLKAWNTGHPGGIATIHANNAK 242 (299)
T ss_pred CHHHHHHHHhcCCCCEEEEeccCCHHHHHHHHHHHcCCCCeEEeeccCCHH
Confidence 455677777789999999976522222234456667887 78999996543
No 355
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=29.65 E-value=2.7e+02 Score=26.03 Aligned_cols=135 Identities=13% Similarity=0.175 Sum_probs=75.6
Q ss_pred HHHHHHHHHHhCCeEEEcC--hhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChh---hHhhhcC-C-CCCCcEEE
Q 016648 114 MWLVIKFLHRAADLTLVPS--VAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSN-G-EPDKPLIV 186 (385)
Q Consensus 114 ~~~~~~~~~~~ad~ii~~s--~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~---~~~~~~~-~-~~~~~~i~ 186 (385)
..-..+.+-+.+|.|++=. ....+.+.++. .+-|| |+.|-+...|...-.+ ....... . .-+...+.
T Consensus 172 i~DTarvLs~y~D~IviR~~~~~~~~e~A~~s-----~vPVI-NAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa 245 (429)
T PRK11891 172 IYDTSRVMSGYVDALVIRHPEQGSVAEFARAT-----NLPVI-NGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIA 245 (429)
T ss_pred HHHHHHHHHHhCCEEEEeCCchhHHHHHHHhC-----CCCEE-ECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEE
Confidence 3345567778899988743 34455554442 34455 4544333334211111 1111110 1 12467899
Q ss_pred EEeeccccccHHHHHHHHHhCCCceEEEEeCCcc--HHHHHHHHcCCC--eEEecccChHHHHHHHHhCcEEEEcCC
Q 016648 187 HVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSE 259 (385)
Q Consensus 187 ~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~--i~~~g~~~~~~~~~~~~~adi~v~ps~ 259 (385)
|+|-....+-..-++.++..+.++++.+++...+ .+.+.+.+.+.+ +.+ .+++.+.++.||++...+.
T Consensus 246 ~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~-----~~d~~eav~~ADVVYt~~~ 317 (429)
T PRK11891 246 LVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQ-----TDDLAAGLRGADVVYATRI 317 (429)
T ss_pred EECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEE-----EcCHHHHhCCCCEEEEcCc
Confidence 9997744555677777777777889999995432 233333333222 322 1677888999999887553
No 356
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=29.43 E-value=4.4e+02 Score=28.05 Aligned_cols=69 Identities=14% Similarity=0.123 Sum_probs=43.7
Q ss_pred EEEEeCCccHHHHHHHHcCC-Ce--EEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 212 IAFIGDGPYREELEKMFTGM-PA--VFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 212 l~i~G~g~~~~~l~~~~~~~-~i--~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
++.+++. ..+..+++.... ++ .-...-+.+++.++++.+|++|...-..--...+..|+.+|+.+++..
T Consensus 608 lV~VaD~-~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 608 HVIVASL-YLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred EEEEECC-CHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 4444543 234445554433 42 222234457888888999999986654444667788889999999764
No 357
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=29.33 E-value=3.1e+02 Score=24.74 Aligned_cols=137 Identities=13% Similarity=0.199 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhCCeEEEcCh--hHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChh---hHhhh-cC-CCCCCcEEE
Q 016648 114 MWLVIKFLHRAADLTLVPSV--AIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRL-SN-GEPDKPLIV 186 (385)
Q Consensus 114 ~~~~~~~~~~~ad~ii~~s~--~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~---~~~~~-~~-~~~~~~~i~ 186 (385)
..-..+.+-+.+|.|+.=.. ...+.+.++ ..+-||. +.+-+...|...-.+ ..... .. ..-+...|.
T Consensus 90 l~Dtarvls~y~D~IviR~~~~~~~~~~a~~-----~~vPVIN-a~~g~~~HPtQaLaDl~Ti~e~~~~~g~~l~g~kia 163 (338)
T PRK08192 90 LYDTARVLSTYSDVIAMRHPDAGSVKEFAEG-----SRVPVIN-GGDGSNEHPTQALLDLFTIQKELAHAGRGIDGMHIA 163 (338)
T ss_pred HHHHHHHHHHcCCEEEEeCCchhHHHHHHHh-----CCCCEEE-CCCCCCCCcHHHHHHHHHHHHHhhccCCCcCCCEEE
Confidence 33456777788999887443 333444433 2344554 444222333211111 11111 00 122568899
Q ss_pred EEeeccccccHHHHHHHHHhCCCceEEEEeCCcc--HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC
Q 016648 187 HVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 259 (385)
Q Consensus 187 ~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~--~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~ 259 (385)
|+|-....+-..-++.++....++.+.+++...+ .+.+.+.+...+..+. . .+++.+.+.+||++.....
T Consensus 164 ~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~-~--~~d~~ea~~~aDvvyt~~~ 235 (338)
T PRK08192 164 MVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKIT-I--TDQLEGNLDKADILYLTRI 235 (338)
T ss_pred EECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEE-E--EcCHHHHHccCCEEEEcCc
Confidence 9997644555677777766666889999995432 2233332322221111 1 1577888999999887644
No 358
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=29.28 E-value=1.3e+02 Score=26.69 Aligned_cols=62 Identities=6% Similarity=0.015 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHH-HHHhcCCc
Q 016648 198 DFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVL-EAMSSGIP 276 (385)
Q Consensus 198 ~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~-Ea~a~G~P 276 (385)
..+++.+...|++++..+..... ....+..++++.+|++++..-.+ ....+. ++...|+.
T Consensus 15 ~el~rlL~~HP~~el~~l~s~~~------------------~~~~~~~~~~~~~D~vFlalp~~-~s~~~~~~~~~~g~~ 75 (310)
T TIGR01851 15 LQIRERLSGRDDIELLSIAPDRR------------------KDAAERAKLLNAADVAILCLPDD-AAREAVSLVDNPNTC 75 (310)
T ss_pred HHHHHHHhCCCCeEEEEEecccc------------------cCcCCHhHhhcCCCEEEECCCHH-HHHHHHHHHHhCCCE
Confidence 36677777788888877764322 01123345667889877655433 233333 34467888
Q ss_pred EE
Q 016648 277 VV 278 (385)
Q Consensus 277 vI 278 (385)
||
T Consensus 76 VI 77 (310)
T TIGR01851 76 II 77 (310)
T ss_pred EE
Confidence 87
No 359
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=29.26 E-value=1.2e+02 Score=23.90 Aligned_cols=48 Identities=19% Similarity=0.135 Sum_probs=33.7
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecC
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 97 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 97 (385)
.+..-+...+++.+||+|++-......-.+-.++-+.+.+++.++-+.
T Consensus 70 ~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtdv~~l 117 (168)
T cd01715 70 PYAPALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISDVTAL 117 (168)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceeeEEEE
Confidence 345667788888899999997643332334456777899998877764
No 360
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=29.19 E-value=3.9e+02 Score=23.30 Aligned_cols=83 Identities=14% Similarity=0.082 Sum_probs=50.5
Q ss_pred ccHHHHHHHH-HhC-CCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC---CCCCcH----
Q 016648 195 KSLDFLKRVM-DRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE---SETLGL---- 265 (385)
Q Consensus 195 k~~~~l~~a~-~~~-~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~---~e~~~~---- 265 (385)
-|=+.+++++ +++ ++.++.+....+... .+ ..++.-....+..++...+..+|++|...- .+..+.
T Consensus 12 ~GDe~~l~~~l~~l~~~~~~~v~s~~p~~~--~~---~~~v~~~~r~~~~~~~~~l~~~D~vI~gGG~l~~d~~~~~~~~ 86 (298)
T TIGR03609 12 LGDEALLAALLRELPPGVEPTVLSNDPAET--AK---LYGVEAVNRRSLLAVLRALRRADVVIWGGGSLLQDVTSFRSLL 86 (298)
T ss_pred cchHHHHHHHHHhcCCCCeEEEecCChHHH--Hh---hcCceEEccCCHHHHHHHHHHCCEEEECCcccccCCcccccHH
Confidence 4555555544 334 678888877554322 22 236666666666788999999999997632 222111
Q ss_pred ----HHHHHHhcCCcEEEecC
Q 016648 266 ----VVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 266 ----~~~Ea~a~G~PvI~s~~ 282 (385)
...-|..+|+|++....
T Consensus 87 ~~~~~~~~a~~~~k~~~~~g~ 107 (298)
T TIGR03609 87 YYLGLMRLARLFGKPVILWGQ 107 (298)
T ss_pred HHHHHHHHHHHcCCCEEEEec
Confidence 12345668999987544
No 361
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=29.04 E-value=2.5e+02 Score=24.29 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=25.3
Q ss_pred HHHHhCcEEEE-cCCCCCCcHHHHHHHhcCCcEE
Q 016648 246 QAYASGDVFVM-PSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 246 ~~~~~adi~v~-ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
.-+..||++++ .|+..-.|++++=|+ .|.-|.
T Consensus 139 ~~l~~ADIiLvGVSRtsKTPlS~YLA~-~G~KvA 171 (269)
T PRK05339 139 RGLDEADVILVGVSRTSKTPTSLYLAN-KGIKAA 171 (269)
T ss_pred CCcccCCEEEECcCCCCCcHHHHHHHc-cCCceE
Confidence 44778999776 588788899999888 887665
No 362
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=29.01 E-value=3e+02 Score=22.02 Aligned_cols=54 Identities=9% Similarity=0.104 Sum_probs=37.6
Q ss_pred cHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHh
Q 016648 196 SLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS 250 (385)
Q Consensus 196 ~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~ 250 (385)
++..+.+.+++ .++++.++|-|...+.+++.++..+=.+.-..+.+++.++|..
T Consensus 124 ~~~~~~~~l~~-~~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~~~~~~l~~~~~~ 177 (183)
T cd01453 124 NIYETIDKLKK-ENIRVSVIGLSAEMHICKEICKATNGTYKVILDETHLKELLLE 177 (183)
T ss_pred hHHHHHHHHHH-cCcEEEEEEechHHHHHHHHHHHhCCeeEeeCCHHHHHHHHHh
Confidence 34455555555 3688988887776677888777666556655666788888876
No 363
>PF14359 DUF4406: Domain of unknown function (DUF4406)
Probab=28.97 E-value=1.2e+02 Score=21.14 Aligned_cols=34 Identities=21% Similarity=0.112 Sum_probs=22.7
Q ss_pred HHHHHhCcEEEEcCCCCCCcHHH---HHHHhcCCcEE
Q 016648 245 SQAYASGDVFVMPSESETLGLVV---LEAMSSGIPVV 278 (385)
Q Consensus 245 ~~~~~~adi~v~ps~~e~~~~~~---~Ea~a~G~PvI 278 (385)
...+..||.+++...++.....- .-|..+|++|+
T Consensus 54 l~~L~~cD~i~~l~gWe~S~GA~~E~~~A~~lGl~V~ 90 (92)
T PF14359_consen 54 LAMLSDCDAIYMLPGWENSRGARLEHELAKKLGLPVI 90 (92)
T ss_pred HHHHHhCCEEEEcCCcccCcchHHHHHHHHHCCCeEe
Confidence 35677999877765555444444 44677889887
No 364
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=28.81 E-value=3.2e+02 Score=22.17 Aligned_cols=108 Identities=13% Similarity=0.242 Sum_probs=57.2
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEec-C
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVR-A 282 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s~-~ 282 (385)
+++++.+.+. ...+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. .+.|+|.-. .
T Consensus 2 ~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~ls~~ 81 (223)
T PRK10816 2 RVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (223)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcC
Confidence 3455554332 233444444334333333333555555543 577776433 2334555655554 367887543 2
Q ss_pred CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 283 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 283 ~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
............|..+++..|.+.+++...+..++.
T Consensus 82 ~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 82 ESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred CCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 222222111145667889999999999998887764
No 365
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=28.71 E-value=3.5e+02 Score=22.62 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=40.6
Q ss_pred chHHHHHHhhccCCCEEEeCC-----CchhHHHHHHHHH-HhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHh
Q 016648 51 LSPRIISEVARFKPDIIHASS-----PGIMVFGALIIAK-LLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA 124 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~-----~~~~~~~~~~~~~-~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (385)
...+-.+.+.+...|.+|+.- .+...+....+.. +...+..+++|-.... ..+.+..+.-..
T Consensus 17 ~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~------------p~~~i~~fa~ag 84 (220)
T COG0036 17 RLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVEN------------PDRYIEAFAKAG 84 (220)
T ss_pred HHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCC------------HHHHHHHHHHhC
Confidence 344555666677889999851 1112222222222 3345677888875421 123356666677
Q ss_pred CCeEEEcCh
Q 016648 125 ADLTLVPSV 133 (385)
Q Consensus 125 ad~ii~~s~ 133 (385)
||.|.+.-+
T Consensus 85 ad~It~H~E 93 (220)
T COG0036 85 ADIITFHAE 93 (220)
T ss_pred CCEEEEEec
Confidence 999988766
No 366
>PRK14852 hypothetical protein; Provisional
Probab=28.68 E-value=3.3e+02 Score=28.61 Aligned_cols=54 Identities=17% Similarity=0.126 Sum_probs=37.4
Q ss_pred CeEEe-cccChHHHHHHHHhCcEEEEcCCCCCCc-----HHHHHHHhcCCcEEEecCCCCCc
Q 016648 232 PAVFT-GMLLGEELSQAYASGDVFVMPSESETLG-----LVVLEAMSSGIPVVGVRAGGIPD 287 (385)
Q Consensus 232 ~i~~~-g~~~~~~~~~~~~~adi~v~ps~~e~~~-----~~~~Ea~a~G~PvI~s~~~~~~e 287 (385)
+|... ..++.+++.+++.++|++|-..- .+. ...-.+...|+|+|.....+...
T Consensus 403 ~I~~~~~~I~~en~~~fl~~~DiVVDa~D--~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g 462 (989)
T PRK14852 403 DIRSFPEGVAAETIDAFLKDVDLLVDGID--FFALDIRRRLFNRALELGIPVITAGPLGYSC 462 (989)
T ss_pred eEEEEecCCCHHHHHHHhhCCCEEEECCC--CccHHHHHHHHHHHHHcCCCEEEeeccccCe
Confidence 45444 67778889999999999995442 222 23345778899999876655443
No 367
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=28.64 E-value=2.3e+02 Score=24.33 Aligned_cols=55 Identities=11% Similarity=0.161 Sum_probs=35.2
Q ss_pred EEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEe
Q 016648 128 TLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG 189 (385)
Q Consensus 128 ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 189 (385)
|++.........+..++..-.-..++|.|.|+..|.+.+..... ..+.-.|++.|
T Consensus 5 Vv~s~~pl~~~v~~I~gd~v~V~~lip~g~dpH~ye~~p~d~~~-------l~~Adlvv~~G 59 (266)
T cd01018 5 VAVSIEPQKYFVEKIAGDTVDVVVLVPPGSNPHTYEPKPQQMKK-------LSEADLYFRIG 59 (266)
T ss_pred EEEEehhHHHHHHHHcCCceeEEEeeCCCCCcCCCCCCHHHHHH-------HHhCCEEEEcC
Confidence 55666666777777666333344578899999999876543322 22445788888
No 368
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=28.59 E-value=2.1e+02 Score=26.00 Aligned_cols=81 Identities=11% Similarity=0.172 Sum_probs=47.1
Q ss_pred eEEecccChHHHHHHHHhCcEEEEcC---CCCCCcHHHHHHHhcC------CcEEEecCCCCCcccccCCCCCeeEeeCC
Q 016648 233 AVFTGMLLGEELSQAYASGDVFVMPS---ESETLGLVVLEAMSSG------IPVVGVRAGGIPDIIPEDQDGKIGYLFNP 303 (385)
Q Consensus 233 i~~~g~~~~~~~~~~~~~adi~v~ps---~~e~~~~~~~Ea~a~G------~PvI~s~~~~~~e~~~~~~~~~~g~~~~~ 303 (385)
+..+.+++.+.+.+..+.++.++.-. ...|+|..+.|.++-. .|+.--.....+ ++. ...-.-...+
T Consensus 262 ~~~ikPlD~~~l~~~~~~t~~vvtvEE~~~~GGlGs~Va~~l~e~~f~~~~~~v~rlg~~d~~--~p~-~~~le~~~~p- 337 (356)
T PLN02683 262 LRSIRPLDRDTINASVRKTNRLVTVEEGWPQHGVGAEICASVVEESFDYLDAPVERIAGADVP--MPY-AANLERLALP- 337 (356)
T ss_pred CCCCCccCHHHHHHHHhhcCeEEEEeCCCcCCCHHHHHHHHHHHhchhccCCCeEEeccCCcC--CCc-cHHHHHhhCC-
Confidence 34566677777888898888776543 2468888888888654 365432221111 100 0000111222
Q ss_pred CCHHHHHHHHhHhhc
Q 016648 304 GDLDDCLSKLEPLLY 318 (385)
Q Consensus 304 ~~~~~l~~~i~~ll~ 318 (385)
+++.+++++.+++.
T Consensus 338 -~~~~i~~a~~~~~~ 351 (356)
T PLN02683 338 -QVEDIVRAAKRACY 351 (356)
T ss_pred -CHHHHHHHHHHHHH
Confidence 78888888888864
No 369
>PLN02928 oxidoreductase family protein
Probab=28.26 E-value=2e+02 Score=25.97 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=24.6
Q ss_pred hHHHHHHHHhCcEEEE--cCCCC---CCcHHHHHHHhcCCcEEE
Q 016648 241 GEELSQAYASGDVFVM--PSESE---TLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 241 ~~~~~~~~~~adi~v~--ps~~e---~~~~~~~Ea~a~G~PvI~ 279 (385)
..++.+++++||++++ |...+ -++...++.|--|.-+|-
T Consensus 217 ~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lIN 260 (347)
T PLN02928 217 HEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVN 260 (347)
T ss_pred ccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEE
Confidence 3578899999999886 33322 234556666665655553
No 370
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.21 E-value=3.5e+02 Score=22.45 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=26.6
Q ss_pred ecccChHHHHHHHHh-----CcE-EEEcCCCCCCcHHHHHHHhcCCcEEEecCCCC
Q 016648 236 TGMLLGEELSQAYAS-----GDV-FVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 285 (385)
Q Consensus 236 ~g~~~~~~~~~~~~~-----adi-~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~ 285 (385)
.|.++...+..+-++ +|. ++.+...-+++..-.==-..|+|||+|+...+
T Consensus 160 igr~~P~~~y~lAk~~~~~~~DaiFiSCTnlRt~eii~~lE~~~G~PVvsSN~AT~ 215 (238)
T COG3473 160 IGRQEPWAVYRLAKEVFTPDADAIFISCTNLRTFEIIEKLERDTGVPVVSSNQATL 215 (238)
T ss_pred hcccChHHHHHHHHHhcCCCCCeEEEEeeccccHHHHHHHHHHhCCceeeccHHHH
Confidence 455555555444333 465 44444334444322222468999999986543
No 371
>PRK06487 glycerate dehydrogenase; Provisional
Probab=28.18 E-value=2.2e+02 Score=25.41 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=24.2
Q ss_pred HHHHHHHHhCcEEEE--cCCCC---CCcHHHHHHHhcCCcEEEe
Q 016648 242 EELSQAYASGDVFVM--PSESE---TLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 242 ~~~~~~~~~adi~v~--ps~~e---~~~~~~~Ea~a~G~PvI~s 280 (385)
.++.++++.||++++ |...+ -++...++.|--|.-+|-+
T Consensus 189 ~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~ 232 (317)
T PRK06487 189 LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINT 232 (317)
T ss_pred cCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEEC
Confidence 367888999998775 43322 3455666666666555543
No 372
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=27.92 E-value=1.1e+02 Score=23.93 Aligned_cols=40 Identities=30% Similarity=0.247 Sum_probs=27.4
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCcH--HHHHHHhcCCcEEEecCC
Q 016648 242 EELSQAYASGDVFVMPSESETLGL--VVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~~e~~~~--~~~Ea~a~G~PvI~s~~~ 283 (385)
+.-.-+...||.+|...- +.|+ -+.|++..++|++.-+..
T Consensus 83 ~Rk~~m~~~sda~IvlpG--G~GTL~E~~~a~~~~kpv~~l~~~ 124 (159)
T TIGR00725 83 ARNFILVRSADVVVSVGG--GYGTAIEILGAYALGGPVVVLRGT 124 (159)
T ss_pred hHHHHHHHHCCEEEEcCC--chhHHHHHHHHHHcCCCEEEEECC
Confidence 344556777998776532 4443 578999999999876544
No 373
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=27.81 E-value=1.3e+02 Score=27.15 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=41.1
Q ss_pred HHHHHHHhCCCceEE-EEeCCc-cHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCc
Q 016648 199 FLKRVMDRLPEARIA-FIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 276 (385)
Q Consensus 199 ~l~~a~~~~~~~~l~-i~G~g~-~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 276 (385)
.+++.+.+.|.+++. ++.... ..+.+............-.+...+..++...+|++++..-.+.....+.++...|+.
T Consensus 15 ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~s~~~~~~~~~~G~~ 94 (346)
T TIGR01850 15 ELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGVSAELAPELLAAGVK 94 (346)
T ss_pred HHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchHHHHHHHHHHhCCCE
Confidence 566777778888888 445322 111222211111000000111113334446899988876554444445556678998
Q ss_pred EEE
Q 016648 277 VVG 279 (385)
Q Consensus 277 vI~ 279 (385)
||-
T Consensus 95 VID 97 (346)
T TIGR01850 95 VID 97 (346)
T ss_pred EEe
Confidence 883
No 374
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=27.78 E-value=1.4e+02 Score=26.47 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=26.0
Q ss_pred hHHHHHHHHhCcEEEEc--CCCC---CCcHHHHHHHhcCCcEEEe
Q 016648 241 GEELSQAYASGDVFVMP--SESE---TLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 241 ~~~~~~~~~~adi~v~p--s~~e---~~~~~~~Ea~a~G~PvI~s 280 (385)
.+++.+++++||++++. ...+ -+....++.|--|.-+|-.
T Consensus 181 ~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~ 225 (312)
T PRK15469 181 REELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNL 225 (312)
T ss_pred cccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEEC
Confidence 36788999999998863 3322 2344567777777655543
No 375
>TIGR00075 hypD hydrogenase expression/formation protein HypD. HypD is involved in the hyp operon which is needed for the activity of the three hydrogenase isoenzymes in Escherichia coli. HypD is one of the genes needed for formation of these enzymes. This protein has been found in gram-negative and gram-positive bacteria and Archaea.
Probab=27.57 E-value=1.5e+02 Score=26.90 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCceEEEEeCCccH------HHHHHHHcC--CCeEEec--ccChHHHHHHHHh----CcEEEEcCCC-C
Q 016648 197 LDFLKRVMDRLPEARIAFIGDGPYR------EELEKMFTG--MPAVFTG--MLLGEELSQAYAS----GDVFVMPSES-E 261 (385)
Q Consensus 197 ~~~l~~a~~~~~~~~l~i~G~g~~~------~~l~~~~~~--~~i~~~g--~~~~~~~~~~~~~----adi~v~ps~~-e 261 (385)
....++.+++.|+-++++.|-|-+. ..+.+...+ .|+.++- .+...-+..+++. -|.+|.|... -
T Consensus 124 pldAl~iA~~nPdk~VVF~avGFETTaP~~A~~i~~a~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs~ 203 (369)
T TIGR00075 124 PMDALKIAKENPDRKVVFFAIGFETTAPTTASTLLSAKAEDINNFFFLSAHRLVPPAVEALLENPAVQIDAFLAPGHVST 203 (369)
T ss_pred HHHHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCcEEEEEeccccHHHHHHHHcCCCCCccEEEecCEEEE
Confidence 5566777788888888888866432 122222221 1433322 2223456666655 3778888763 2
Q ss_pred CCcHHHHHHHh--cCCcEEEec
Q 016648 262 TLGLVVLEAMS--SGIPVVGVR 281 (385)
Q Consensus 262 ~~~~~~~Ea~a--~G~PvI~s~ 281 (385)
-.|...++.++ +|+|+|.+.
T Consensus 204 I~G~~~y~~l~~~y~~P~VVaG 225 (369)
T TIGR00075 204 IIGAKPYAPIAEKYKIPIVIAG 225 (369)
T ss_pred EeccchhHHHHHHcCCCeEEec
Confidence 34666666655 578888654
No 376
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.56 E-value=1.3e+02 Score=21.11 Aligned_cols=71 Identities=14% Similarity=0.114 Sum_probs=37.7
Q ss_pred EEEeCCcc----HHHHHHHHcCCCeEE-ecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHH--hcCCcEEEecCCC
Q 016648 213 AFIGDGPY----REELEKMFTGMPAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM--SSGIPVVGVRAGG 284 (385)
Q Consensus 213 ~i~G~g~~----~~~l~~~~~~~~i~~-~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~--a~G~PvI~s~~~~ 284 (385)
+++|.|-. ...+++.+++.++.+ ....+..++.+....+|+++...... +-..-++.. ..|+||..-+...
T Consensus 8 l~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~Dvill~pqi~-~~~~~i~~~~~~~~ipv~~I~~~~ 85 (95)
T TIGR00853 8 LLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDADVVLLAPQVA-YMLPDLKKETDKKGIPVEVINGAQ 85 (95)
T ss_pred EECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCCEEEECchHH-HHHHHHHHHhhhcCCCEEEeChhh
Confidence 44555432 234555555554422 22334467777788899888654311 122223333 3578999865443
No 377
>PRK06932 glycerate dehydrogenase; Provisional
Probab=27.51 E-value=2.5e+02 Score=24.99 Aligned_cols=40 Identities=10% Similarity=0.209 Sum_probs=26.7
Q ss_pred HHHHHHHHhCcEEEE--cCCCC---CCcHHHHHHHhcCCcEEEec
Q 016648 242 EELSQAYASGDVFVM--PSESE---TLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 242 ~~~~~~~~~adi~v~--ps~~e---~~~~~~~Ea~a~G~PvI~s~ 281 (385)
.++.++++.||++++ |...+ -++...++.|--|.-+|-+.
T Consensus 189 ~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~a 233 (314)
T PRK06932 189 TPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTG 233 (314)
T ss_pred CCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECC
Confidence 468888999999775 43333 34666777777676666443
No 378
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=27.49 E-value=1.7e+02 Score=24.50 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=30.3
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEE
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVM 92 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~ 92 (385)
.....+.+++.+.|+|+.++.++..-..-.+++..|+|++.
T Consensus 167 l~~Aa~~L~~~gadlIvLDCmGYt~~~r~~~~~~~g~PVlL 207 (221)
T PF07302_consen 167 LAAAARELAEQGADLIVLDCMGYTQEMRDIVQRALGKPVLL 207 (221)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHhCCCEEe
Confidence 34556667777889998888766666666677778888876
No 379
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=26.80 E-value=1.8e+02 Score=29.05 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=19.2
Q ss_pred hCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 250 SGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 250 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
..|++|.- +..|.++--|...|+|||.
T Consensus 631 ktd~LV~G---~~aGsKl~KA~~LGI~Ii~ 657 (669)
T PRK14350 631 YLDFLLVG---EKAGLKLKKANNLGIKIMS 657 (669)
T ss_pred CCcEEEEC---CCCCchHHHHHHcCCEEec
Confidence 34444442 3457899999999999984
No 380
>PRK08328 hypothetical protein; Provisional
Probab=26.69 E-value=2.9e+02 Score=23.23 Aligned_cols=46 Identities=24% Similarity=0.241 Sum_probs=30.4
Q ss_pred ChHHHHHHHHhCcEEEEcCCCCCCcHHHHH--HHhcCCcEEEecCCCCC
Q 016648 240 LGEELSQAYASGDVFVMPSESETLGLVVLE--AMSSGIPVVGVRAGGIP 286 (385)
Q Consensus 240 ~~~~~~~~~~~adi~v~ps~~e~~~~~~~E--a~a~G~PvI~s~~~~~~ 286 (385)
+.+++.++++.+|+++....... ...++. +...|+|+|.....+..
T Consensus 108 ~~~~~~~~l~~~D~Vid~~d~~~-~r~~l~~~~~~~~ip~i~g~~~g~~ 155 (231)
T PRK08328 108 SEENIDEVLKGVDVIVDCLDNFE-TRYLLDDYAHKKGIPLVHGAVEGTY 155 (231)
T ss_pred CHHHHHHHHhcCCEEEECCCCHH-HHHHHHHHHHHcCCCEEEEeeccCE
Confidence 33566778899999987654322 233444 67889999977655443
No 381
>PRK09190 hypothetical protein; Provisional
Probab=26.64 E-value=3.4e+02 Score=22.75 Aligned_cols=77 Identities=12% Similarity=0.127 Sum_probs=52.6
Q ss_pred ccHHHHHHHHHhCCCceEEEEeCC---ccHHHHHHHHcC------CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcH
Q 016648 195 KSLDFLKRVMDRLPEARIAFIGDG---PYREELEKMFTG------MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGL 265 (385)
Q Consensus 195 k~~~~l~~a~~~~~~~~l~i~G~g---~~~~~l~~~~~~------~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~ 265 (385)
-|.+.+.++++. ..+.++|+... ...+++..+... .+|-+....+.+++-..+......+..-...++..
T Consensus 114 sG~~~V~~alk~-gk~~Lvi~A~DaS~~t~kKl~~~~~~~~~~~~~~Vp~v~~~tk~eLg~AlGr~~~~~vav~d~gfA~ 192 (220)
T PRK09190 114 SGFEKVDAALRS-GEAAALIHASDGAADGKRKLDQARRALVHETGREIPVIGLFTAAELGLAFGRENVIHAALLAGGAAE 192 (220)
T ss_pred ecHHHHHHHHHc-CCceEEEEeccCChhHHHHHHHHHHhhcccccCCccEEEecCHHHHHHHhCCCceeEEEEcChHHHH
Confidence 356677777765 35777777632 334566666655 56777777788999999988877666666677777
Q ss_pred HHHHHHh
Q 016648 266 VVLEAMS 272 (385)
Q Consensus 266 ~~~Ea~a 272 (385)
.+++.+.
T Consensus 193 ~l~~~~~ 199 (220)
T PRK09190 193 RVVKRAQ 199 (220)
T ss_pred HHHHHHH
Confidence 7666554
No 382
>TIGR00035 asp_race aspartate racemase.
Probab=26.59 E-value=3.1e+02 Score=22.91 Aligned_cols=92 Identities=13% Similarity=0.286 Sum_probs=49.5
Q ss_pred EEEEEeeccccccHHHHHHHHHhC------CCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEE
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRL------PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFV 255 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~------~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v 255 (385)
.|+.+|.+++.-..+.+-+..+.. .....++..+....+.......+..-.....+ .+..+.+. ++|+++
T Consensus 3 ~iGiiGGmgp~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l--~~~~~~L~~~g~d~iv 80 (229)
T TIGR00035 3 MIGILGGMGPLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPIL--IDIAVKLENAGADFII 80 (229)
T ss_pred eEEEecCcCHHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHH--HHHHHHHHHcCCCEEE
Confidence 488899998887777666655443 13456666654433333333322222233333 33344433 478899
Q ss_pred EcCCCCCCcHHHHHHHh--cCCcEEEe
Q 016648 256 MPSESETLGLVVLEAMS--SGIPVVGV 280 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a--~G~PvI~s 280 (385)
+|.... ...++.+. .++|+|..
T Consensus 81 iaCNTa---h~~~~~l~~~~~iPii~i 104 (229)
T TIGR00035 81 MPCNTA---HKFAEDIQKAIGIPLISM 104 (229)
T ss_pred ECCccH---HHHHHHHHHhCCCCEech
Confidence 887632 22233332 46888863
No 383
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=26.57 E-value=93 Score=28.09 Aligned_cols=85 Identities=11% Similarity=0.099 Sum_probs=49.0
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE 259 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~ 259 (385)
...|+++|---..-+++..++-... .-++.+.|.-+ .+++.+...+..|.+...++..=-..++.. |.+.+..++
T Consensus 226 ~vrfii~GDGPk~i~lee~lEk~~l--~~rV~~lG~v~-h~~Vr~vl~~G~IFlntSlTEafc~~ivEAaScGL~VVsTr 302 (426)
T KOG1111|consen 226 EVRFIIIGDGPKRIDLEEMLEKLFL--QDRVVMLGTVP-HDRVRDVLVRGDIFLNTSLTEAFCMVIVEAASCGLPVVSTR 302 (426)
T ss_pred CeeEEEecCCcccchHHHHHHHhhc--cCceEEecccc-hHHHHHHHhcCcEEeccHHHHHHHHHHHHHHhCCCEEEEee
Confidence 4568888865555566666655443 45778888543 345666666667777776643322334444 445556666
Q ss_pred CCCCcHHHHH
Q 016648 260 SETLGLVVLE 269 (385)
Q Consensus 260 ~e~~~~~~~E 269 (385)
..|.|-.+-|
T Consensus 303 VGGIpeVLP~ 312 (426)
T KOG1111|consen 303 VGGIPEVLPE 312 (426)
T ss_pred cCCccccCCc
Confidence 6665544433
No 384
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=26.44 E-value=3.7e+02 Score=22.13 Aligned_cols=83 Identities=12% Similarity=0.033 Sum_probs=48.7
Q ss_pred cccChHHHHHHHHh--CcEEEE----cCCCCCCcHHHHHHHhc---CCcEEEe-cCCCCCcccccC-CCCCeeEeeCCCC
Q 016648 237 GMLLGEELSQAYAS--GDVFVM----PSESETLGLVVLEAMSS---GIPVVGV-RAGGIPDIIPED-QDGKIGYLFNPGD 305 (385)
Q Consensus 237 g~~~~~~~~~~~~~--adi~v~----ps~~e~~~~~~~Ea~a~---G~PvI~s-~~~~~~e~~~~~-~~~~~g~~~~~~~ 305 (385)
.+-+.+++.+.+.. .|++|+ +...+.-|..+++.+.. ++|||.- ........+... +.|-.|++..+.+
T Consensus 22 ~~~~~~~~l~~~~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~ 101 (207)
T PRK11475 22 TFSSQSSFQDAMSRISFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIEARLIGSLSPSPLDGVLSKAST 101 (207)
T ss_pred EeCCHHHHHHHhccCCCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCHHHHHHHHHHcCCeEEEecCCC
Confidence 34444565555543 477763 22233456677777643 5666643 222111122100 3577899999999
Q ss_pred HHHHHHHHhHhhcC
Q 016648 306 LDDCLSKLEPLLYN 319 (385)
Q Consensus 306 ~~~l~~~i~~ll~~ 319 (385)
.+++.++|..+++.
T Consensus 102 ~~eL~~aI~~v~~G 115 (207)
T PRK11475 102 LEILQQELFLSLNG 115 (207)
T ss_pred HHHHHHHHHHHHCC
Confidence 99999999998763
No 385
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=26.43 E-value=2.3e+02 Score=26.00 Aligned_cols=14 Identities=14% Similarity=0.354 Sum_probs=10.8
Q ss_pred HHHHHHHHhCcEEE
Q 016648 242 EELSQAYASGDVFV 255 (385)
Q Consensus 242 ~~~~~~~~~adi~v 255 (385)
.++.+++++||+++
T Consensus 159 ~~L~ell~~sDiI~ 172 (378)
T PRK15438 159 RSLDELVQEADILT 172 (378)
T ss_pred CCHHHHHhhCCEEE
Confidence 35778888888877
No 386
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=26.16 E-value=3.7e+02 Score=22.05 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=31.3
Q ss_pred ChHHHHHHHHhCcEEEEcCCC---------C-CCcHHHHHHHhcCCcEEEecCCC
Q 016648 240 LGEELSQAYASGDVFVMPSES---------E-TLGLVVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 240 ~~~~~~~~~~~adi~v~ps~~---------e-~~~~~~~Ea~a~G~PvI~s~~~~ 284 (385)
+.+++.+.+.+||+++++--. + +.-..+.+....|+|++.+..|+
T Consensus 70 ~~~~~~~~l~~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA 124 (210)
T cd03129 70 NDPDVVARLLEADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGA 124 (210)
T ss_pred CCHHHHHHHhhCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHH
Confidence 347788888899988876321 1 13345788888899999876554
No 387
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=25.89 E-value=1.7e+02 Score=24.32 Aligned_cols=45 Identities=11% Similarity=-0.017 Sum_probs=35.6
Q ss_pred CCCCHHHHHHHHhHhhc-CHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q 016648 302 NPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTI 346 (385)
Q Consensus 302 ~~~~~~~l~~~i~~ll~-~~~~~~~~~~~a~~~~~~~s~~~~~~~~ 346 (385)
+..+.+.+.+++...+. ||+.++.-+++..++++..+.+.+..-+
T Consensus 64 p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l 109 (216)
T PF11264_consen 64 PEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSWL 109 (216)
T ss_pred ChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34578888888888887 8888888888888888888887776555
No 388
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=25.46 E-value=3e+02 Score=24.64 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=31.8
Q ss_pred eEEecccChHHHHHHHHhCcEEEEcCC---CCCCcHHHHHHHhcC
Q 016648 233 AVFTGMLLGEELSQAYASGDVFVMPSE---SETLGLVVLEAMSSG 274 (385)
Q Consensus 233 i~~~g~~~~~~~~~~~~~adi~v~ps~---~e~~~~~~~Ea~a~G 274 (385)
+..+-+++.+.+.+.++.++.++.... ..|++..+.|.++..
T Consensus 235 ~~~l~Pld~~~i~~~~~~~~~vv~vEe~~~~gGlg~~la~~l~~~ 279 (327)
T PRK09212 235 LRTLRPLDTETIIESVKKTNRLVVVEEGWPFAGVGAEIAALIMKE 279 (327)
T ss_pred EecCCCCCHHHHHHHHHhCCeEEEEcCCCCCCCHHHHHHHHHHHh
Confidence 556777777889999999988776532 457788898888754
No 389
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=25.36 E-value=2.3e+02 Score=24.38 Aligned_cols=47 Identities=21% Similarity=0.154 Sum_probs=32.7
Q ss_pred hHHHHHHhhccCCCEEEeCCCch-hHHHHHHHHHHhCCCEEEEEecCC
Q 016648 52 SPRIISEVARFKPDIIHASSPGI-MVFGALIIAKLLCVPIVMSYHTHV 98 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~-~~~~~~~~~~~~~~p~v~~~h~~~ 98 (385)
+..+.+...+.+||+|++-.... .....++-+...|..++.|+|...
T Consensus 138 ~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~tGh~v~tTlHa~~ 185 (264)
T cd01129 138 FARGLRAILRQDPDIIMVGEIRDAETAEIAVQAALTGHLVLSTLHTND 185 (264)
T ss_pred HHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 45566666688999999987532 223334455667888999999854
No 390
>COG0439 AccC Biotin carboxylase [Lipid metabolism]
Probab=24.96 E-value=6e+02 Score=24.06 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=69.8
Q ss_pred cccHHHHHHHHHhCCCceEEEEeCC--ccHHHHHHHHcCCCeEEecccCh--------HHHHHHHHhCcEEEEcCCCCCC
Q 016648 194 EKSLDFLKRVMDRLPEARIAFIGDG--PYREELEKMFTGMPAVFTGMLLG--------EELSQAYASGDVFVMPSESETL 263 (385)
Q Consensus 194 ~k~~~~l~~a~~~~~~~~l~i~G~g--~~~~~l~~~~~~~~i~~~g~~~~--------~~~~~~~~~adi~v~ps~~e~~ 263 (385)
..+++.++.+.+.. ....+.-|.| .+.+.+.+.+.+.++.|.|+-+. ..+..+++.+-+=+.|.. ++.
T Consensus 60 yl~i~~ii~~a~~~-gadai~pGygflsen~~fae~~~~~gl~fiGP~~~~i~~mgdK~~ar~~~~~aGVP~vpgs-~~~ 137 (449)
T COG0439 60 YLNIDAIIAAAEET-GADAIHPGYGFLSENAAFAEACAEAGLTFIGPSAEAIRRMGDKITARRLMAKAGVPVVPGS-DGA 137 (449)
T ss_pred hhhHHHHHHHHHhc-CCceEcccchhhhCCHHHHHHHHHcCCeeeCcCHHHHHHhhhHHHHHHHHHHcCCCcCCCC-CCC
Confidence 46677777777664 4555666655 55667777777777888887533 235677888888887766 322
Q ss_pred cH----HHHHHHhcCCcEEEecCCCCCcccccCCCCCee-EeeCCCCHHHHHHHHhHhh
Q 016648 264 GL----VVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIG-YLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 264 ~~----~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g-~~~~~~~~~~l~~~i~~ll 317 (385)
.. ..--|-..|-|||.-...+. |..| .++. +.++|.+++..+.
T Consensus 138 ~~~~ee~~~~a~~iGyPVivKa~~Gg---------Gg~G~r~v~--~~~el~~a~~~~~ 185 (449)
T COG0439 138 VADNEEALAIAEEIGYPVIVKAAAGG---------GGRGMRVVR--NEEELEAAFEAAR 185 (449)
T ss_pred cCCHHHHHHHHHHcCCCEEEEECCCC---------CcccEEEEC--CHHHHHHHHHHHH
Confidence 11 12223445899997554432 2223 3444 8999999888764
No 391
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=24.94 E-value=4e+02 Score=22.01 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=42.3
Q ss_pred CCCceEEEEeCCccH-HHHHHHHcCCC-----eE-EecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 207 LPEARIAFIGDGPYR-EELEKMFTGMP-----AV-FTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 207 ~~~~~l~i~G~g~~~-~~l~~~~~~~~-----i~-~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
...-+++++|..+.. +.+++.+...+ -+ .-|.+++..+.. +..=|++++... ..-..++.||..+|+|+|+
T Consensus 65 ~~~~~ILfVgTk~~~~~~v~k~A~~~g~~~v~~RWlgG~LTN~~~~~-~~~Pdliiv~dp-~~~~~AI~EA~kl~IP~Ia 142 (204)
T PRK04020 65 YEPEKILVVSSRQYGQKPVQKFAEVVGAKAITGRFIPGTLTNPSLKG-YIEPDVVVVTDP-RGDAQAVKEAIEVGIPVVA 142 (204)
T ss_pred hcCCeEEEEeCCHHHHHHHHHHHHHhCCeeecCccCCCcCcCcchhc-cCCCCEEEEECC-cccHHHHHHHHHhCCCEEE
Confidence 345567777855433 23333332221 11 233444333322 234555554332 2236789999999999997
Q ss_pred e-cCCCCCccc
Q 016648 280 V-RAGGIPDII 289 (385)
Q Consensus 280 s-~~~~~~e~~ 289 (385)
- |...-++.+
T Consensus 143 ivDTn~dp~~V 153 (204)
T PRK04020 143 LCDTDNLTSNV 153 (204)
T ss_pred EEeCCCCcccC
Confidence 5 444444554
No 392
>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases.; GO: 0005524 ATP binding, 0016772 transferase activity, transferring phosphorus-containing groups
Probab=24.89 E-value=3.4e+02 Score=23.30 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=25.7
Q ss_pred HHHHHhCcEEEE-cCCCCCCcHHHHHHHhcCCcEE
Q 016648 245 SQAYASGDVFVM-PSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 245 ~~~~~~adi~v~-ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
+.-+.+||++++ .|+..-.|++++=|+ .|.-|.
T Consensus 132 ~~~l~~ADivLvGVSRtsKTPlS~YLA~-~G~KvA 165 (255)
T PF03618_consen 132 PRGLDEADIVLVGVSRTSKTPLSMYLAN-KGYKVA 165 (255)
T ss_pred ccccccCCEEEEcccccCCCchhHHHHh-cCccee
Confidence 445778999776 577778899999888 887665
No 393
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=24.87 E-value=3.5e+02 Score=23.91 Aligned_cols=92 Identities=10% Similarity=0.076 Sum_probs=47.7
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEe-CCccHHHHHHHHcCCCeEEecccChHHHHHHH-----HhCcEEE
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIG-DGPYREELEKMFTGMPAVFTGMLLGEELSQAY-----ASGDVFV 255 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G-~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~-----~~adi~v 255 (385)
+..+..+|.- .=|.+.+....+ .+++++.-+- ..+..+.+ +..++.++.. ..+++..++ ...|+++
T Consensus 4 klrVAIIGtG--~IGt~hm~~l~~-~~~velvAVvdid~es~gl-a~A~~~Gi~~----~~~~ie~LL~~~~~~dIDiVf 75 (302)
T PRK08300 4 KLKVAIIGSG--NIGTDLMIKILR-SEHLEPGAMVGIDPESDGL-ARARRLGVAT----SAEGIDGLLAMPEFDDIDIVF 75 (302)
T ss_pred CCeEEEEcCc--HHHHHHHHHHhc-CCCcEEEEEEeCChhhHHH-HHHHHcCCCc----ccCCHHHHHhCcCCCCCCEEE
Confidence 3557777722 223444444444 6778877544 33332222 2233334322 113344444 3577777
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
..+..+..---...+...|+.||...
T Consensus 76 ~AT~a~~H~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 76 DATSAGAHVRHAAKLREAGIRAIDLT 101 (302)
T ss_pred ECCCHHHHHHHHHHHHHcCCeEEECC
Confidence 76544433344566888899998643
No 394
>CHL00148 orf27 Ycf27; Reviewed
Probab=24.82 E-value=3.9e+02 Score=21.86 Aligned_cols=107 Identities=18% Similarity=0.290 Sum_probs=56.6
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh--cCCcEEEe-c
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS--SGIPVVGV-R 281 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a--~G~PvI~s-~ 281 (385)
..++.++.+.+. ...+.......+..+...-+.++....+.. .|++++... .+..|..+++.+. ..+|+|.- .
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~ls~ 85 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKEQPDLVILDVMMPKLDGYGVCQEIRKESDVPIIMLTA 85 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 345666665432 223333333333333222233444444433 577776433 2334555555553 25777643 2
Q ss_pred CCCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 282 AGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 282 ~~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
..... +.+ ..|..+++..+.+.+++.+.+..++.
T Consensus 86 ~~~~~~~~~~~---~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 86 LGDVSDRITGL---ELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred CCCHHhHHHHH---HCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 22222 233 45677899999999999998887654
No 395
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.80 E-value=2.9e+02 Score=23.73 Aligned_cols=55 Identities=18% Similarity=0.188 Sum_probs=36.2
Q ss_pred EEEcChhHHHHHHHhcccCCCcEEEee-CCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEe
Q 016648 128 TLVPSVAIGKDLEAARVTAANKIRIWK-KGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG 189 (385)
Q Consensus 128 ii~~s~~~~~~~~~~~~~~~~~i~vi~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 189 (385)
|++.........++.++...+-..++| .|.|+..|.+.+..... ..+.-.+++.|
T Consensus 5 Vvtt~~pl~~~v~~I~gd~v~V~~l~p~~g~dpH~y~~~p~d~~~-------l~~ADliv~~G 60 (264)
T cd01020 5 VVASTNFWGSVAEAVGGDHVEVTSIITNPDVDPHDFEPTPTDAAK-------VSTADIVVYNG 60 (264)
T ss_pred EEEEccHHHHHHHHHcCCceEEEEecCCCCCCcccCCCCHHHHHH-------HhhCCEEEEeC
Confidence 666666677777777763333445788 89999999876543221 23456788888
No 396
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=24.80 E-value=1.9e+02 Score=24.40 Aligned_cols=59 Identities=12% Similarity=0.171 Sum_probs=36.7
Q ss_pred HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 221 REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 221 ~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
.+..+......++.....+ +++.. ...|+++..+.....---..+++.+|+.|++-..+
T Consensus 12 ~e~a~~~a~~~g~~~~~d~--~eLl~--~~vDaVviatp~~~H~e~a~~aL~aGkhVl~~s~g 70 (229)
T TIGR03855 12 PKDAKELAERCGAKIVSDF--DEFLP--EDVDIVVEAASQEAVKEYAEKILKNGKDLLIMSVG 70 (229)
T ss_pred HHHHHHHHHHhCCceECCH--HHHhc--CCCCEEEECCChHHHHHHHHHHHHCCCCEEEECCc
Confidence 3445555554444332222 45432 56899988776555556678899999999984433
No 397
>PRK09581 pleD response regulator PleD; Reviewed
Probab=24.77 E-value=5.6e+02 Score=23.66 Aligned_cols=105 Identities=21% Similarity=0.188 Sum_probs=59.8
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcEEEec
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGVR 281 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~s~ 281 (385)
+++++.+.+. ...+............-.-+.++....+.. .|++++... .+.-+..+++.+.. .+|+|...
T Consensus 4 ~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii~~s 83 (457)
T PRK09581 4 RILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICEREQPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVVMVT 83 (457)
T ss_pred eEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEE
Confidence 4555554432 233333333333222222233555555543 577776544 34456777777754 57887543
Q ss_pred C-CCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 282 A-GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 282 ~-~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
. +.. .+.+ ..|..+++..|.+.+++...+..++.
T Consensus 84 ~~~~~~~~~~~~---~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 84 ALDDPEDRVRGL---EAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred CCCCHHHHHHHH---HCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 2 322 2333 56778899999999999999888764
No 398
>PRK13435 response regulator; Provisional
Probab=24.60 E-value=3e+02 Score=20.47 Aligned_cols=106 Identities=19% Similarity=0.197 Sum_probs=51.1
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccCh-HHHHHHHH--hCcEEEEcCCC-C-CCcHHHHHHHh--cCCcEEEe
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLG-EELSQAYA--SGDVFVMPSES-E-TLGLVVLEAMS--SGIPVVGV 280 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~-~~~~~~~~--~adi~v~ps~~-e-~~~~~~~Ea~a--~G~PvI~s 280 (385)
..+++++.+... ...+.......+....+..+. ++....+. ..|++++-... . .-+..+++-+. ..+|+|.-
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~dliivd~~~~~~~~~~~~~~~l~~~~~~pii~l 84 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRRQPDVALVDVHLADGPTGVEVARRLSADGGVEVVFM 84 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhcCCCEEEEeeecCCCCcHHHHHHHHHhCCCCCEEEE
Confidence 345555554432 233444443333333322211 34444333 35777764321 1 23444444443 25677643
Q ss_pred c-CCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 281 R-AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 281 ~-~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
. ........ ..|..+++..+.+.+++.+.|..++
T Consensus 85 s~~~~~~~~~---~~ga~~~l~kp~~~~~l~~~i~~~~ 119 (145)
T PRK13435 85 TGNPERVPHD---FAGALGVIAKPYSPRGVARALSYLS 119 (145)
T ss_pred eCCHHHHHHH---hcCcceeEeCCCCHHHHHHHHHHHH
Confidence 2 22212222 4466677888888888887776664
No 399
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=24.59 E-value=3.1e+02 Score=24.86 Aligned_cols=129 Identities=9% Similarity=0.097 Sum_probs=63.5
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCce---EEEEeCCccH-HHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcC
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEAR---IAFIGDGPYR-EELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 258 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~---l~i~G~g~~~-~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps 258 (385)
..+..+|.-+. --..+++++...|++. +.++++.... +.+ ... ..++.+... +.+ .+..+|++++..
T Consensus 6 ~~VaIvGATG~--vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~-~~~-~~~l~v~~~-~~~----~~~~~Divf~a~ 76 (347)
T PRK06728 6 YHVAVVGATGA--VGQKIIELLEKETKFNIAEVTLLSSKRSAGKTV-QFK-GREIIIQEA-KIN----SFEGVDIAFFSA 76 (347)
T ss_pred CEEEEEeCCCH--HHHHHHHHHHHCCCCCcccEEEEECcccCCCCe-eeC-CcceEEEeC-CHH----HhcCCCEEEECC
Confidence 45666664332 2357888888777766 6666533111 111 111 112333322 212 237899988765
Q ss_pred CCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHH
Q 016648 259 ESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQ 328 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 328 (385)
-.+...--.-++...|++||-. .+.++ +- ...-+.++.-+.+.+.++ ..++.+|........
T Consensus 77 ~~~~s~~~~~~~~~~G~~VID~-Ss~fR-~~-----~~vplvvPEvN~e~i~~~-~~iIanPnC~tt~~~ 138 (347)
T PRK06728 77 GGEVSRQFVNQAVSSGAIVIDN-TSEYR-MA-----HDVPLVVPEVNAHTLKEH-KGIIAVPNCSALQMV 138 (347)
T ss_pred ChHHHHHHHHHHHHCCCEEEEC-chhhc-CC-----CCCCeEeCCcCHHHHhcc-CCEEECCCCHHHHHH
Confidence 4332222233456789888832 12221 11 112255565577777663 346667665444333
No 400
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=24.39 E-value=5.9e+02 Score=23.85 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=27.7
Q ss_pred HHHHHHHHhCcEEEEcCC---CCCCcHH----HHHHHhcCCcEEEecC
Q 016648 242 EELSQAYASGDVFVMPSE---SETLGLV----VLEAMSSGIPVVGVRA 282 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~---~e~~~~~----~~Ea~a~G~PvI~s~~ 282 (385)
.++...+++||++|...- .+.+|.. ++-|..+|+|++....
T Consensus 109 ~~~~~~l~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 109 TDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred HHHHHHHHhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 466778999999998642 2333322 3457789999997643
No 401
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=24.30 E-value=4.5e+02 Score=22.37 Aligned_cols=55 Identities=18% Similarity=0.147 Sum_probs=36.2
Q ss_pred CCCeEEecc--cChHHHHHHHHhCcEEEEcCC-C--CCCcHHHHHHHhcCCcEEEecCCC
Q 016648 230 GMPAVFTGM--LLGEELSQAYASGDVFVMPSE-S--ETLGLVVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 230 ~~~i~~~g~--~~~~~~~~~~~~adi~v~ps~-~--e~~~~~~~Ea~a~G~PvI~s~~~~ 284 (385)
+.+|.+.|. ++.+++.+.+..||++|.-.. . .....-+.+|...|.|+|.-+...
T Consensus 150 rP~vV~FGE~~~~~~~~~~~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~ 209 (242)
T PTZ00408 150 RPHIVWFGEMPLYMDEIESVMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEE 209 (242)
T ss_pred CCCEEEcCCCCCcHHHHHHHHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCC
Confidence 346777776 345677788999999776422 2 222333456888999988776543
No 402
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=24.17 E-value=2e+02 Score=23.35 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=21.4
Q ss_pred HHhCcEEEEcCCC-----------CCCcHHHHHHHhcCCcEEEec
Q 016648 248 YASGDVFVMPSES-----------ETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 248 ~~~adi~v~ps~~-----------e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
...+|.+++|.-. .++-..+.++...|+||++.-
T Consensus 35 ~~~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC 79 (194)
T cd01750 35 LGDADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGIC 79 (194)
T ss_pred CCCCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEEC
Confidence 4566777766432 122345777788899998754
No 403
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are
Probab=24.10 E-value=1.2e+02 Score=25.51 Aligned_cols=39 Identities=18% Similarity=0.296 Sum_probs=25.3
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHH-HHHHhCCC
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALI-IAKLLCVP 89 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~-~~~~~~~p 89 (385)
+...+...+++.+||||..|+...+.+..+. .++..|++
T Consensus 85 LL~~f~~~i~~~DPDiivG~Ni~~fdl~~L~~R~~~l~i~ 124 (234)
T cd05776 85 LLNFFLAKLQKIDPDVLVGHDLEGFDLDVLLSRIQELKVP 124 (234)
T ss_pred HHHHHHHHHhhcCCCEEEeeccCCCCHHHHHHHHHHhCCC
Confidence 4567888889999999999986443333222 23345555
No 404
>PRK11173 two-component response regulator; Provisional
Probab=24.08 E-value=4.1e+02 Score=21.85 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=57.9
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHhc--CCcEEEe-cCC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS--GIPVVGV-RAG 283 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a~--G~PvI~s-~~~ 283 (385)
+++++.+.+. ...+.......+......-+.++....+.. .|++++-... +.-|..+++.+.. +.|+|.- ...
T Consensus 5 ~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~lt~~~ 84 (237)
T PRK11173 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSENDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRD 84 (237)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhCCCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEEECCC
Confidence 4555554432 233444443333333333333555444443 5777765432 3345666666653 5777643 222
Q ss_pred CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 284 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 284 ~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
...+.......|..+++..|.+.+++...+..++.
T Consensus 85 ~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 85 NEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 22221111155677889999999999888887765
No 405
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=23.91 E-value=1.4e+02 Score=23.77 Aligned_cols=48 Identities=27% Similarity=0.254 Sum_probs=33.7
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecC
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTH 97 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~ 97 (385)
.+..-+...+++.+||+|++-......-.+..++.+.+.+++.++-+.
T Consensus 78 ~~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vsdv~~l 125 (181)
T cd01985 78 ATAKALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQISDVTKL 125 (181)
T ss_pred HHHHHHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcceeEEEE
Confidence 345667788888899999997643333334456777899998876664
No 406
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=23.89 E-value=6e+02 Score=23.70 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=51.8
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCC-
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES- 260 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~- 260 (385)
...++.+|.-.- | ..+.+.+....-.++.+++.... ....+....+.. .++.+++.+.+..+|+++..+..
T Consensus 180 ~~~VlViGaG~i--G-~~~a~~L~~~G~~~V~v~~rs~~--ra~~la~~~g~~---~i~~~~l~~~l~~aDvVi~aT~s~ 251 (417)
T TIGR01035 180 GKKALLIGAGEM--G-ELVAKHLLRKGVGKILIANRTYE--RAEDLAKELGGE---AVKFEDLEEYLAEADIVISSTGAP 251 (417)
T ss_pred CCEEEEECChHH--H-HHHHHHHHHCCCCEEEEEeCCHH--HHHHHHHHcCCe---EeeHHHHHHHHhhCCEEEECCCCC
Confidence 345677774211 2 23344444433246777765432 223333332222 23347888899999999986532
Q ss_pred CC-CcHHHHHHHhcC--CcEEEecCCCCCcc
Q 016648 261 ET-LGLVVLEAMSSG--IPVVGVRAGGIPDI 288 (385)
Q Consensus 261 e~-~~~~~~Ea~a~G--~PvI~s~~~~~~e~ 288 (385)
+. .....++.+..+ .|.+..|.+...++
T Consensus 252 ~~ii~~e~l~~~~~~~~~~~~viDla~Prdi 282 (417)
T TIGR01035 252 HPIVSKEDVERALRERTRPLFIIDIAVPRDV 282 (417)
T ss_pred CceEcHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence 21 233445555443 57777777644444
No 407
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=23.76 E-value=3.2e+02 Score=24.68 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=33.0
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCC-EEEEEecCCC
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVP 99 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~ 99 (385)
+..+.+..-+.+||.|++-.....-...++.+...|.+ .+.|+|....
T Consensus 242 ~~~ll~~aLR~~PD~IivGEiRg~Ea~~~l~a~~tGh~G~~tTiHA~s~ 290 (340)
T TIGR03819 242 LTDLVRQALRMRPDRIVVGEVRGAEVVDLLAALNTGHDGGAGTLHANSP 290 (340)
T ss_pred HHHHHHHHhccCCCeEEEeCcCcHHHHHHHHHHHcCCCceEEeeCCCCH
Confidence 45677777789999999976532222234555668887 6899999653
No 408
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=23.76 E-value=1e+02 Score=22.02 Aligned_cols=22 Identities=32% Similarity=0.706 Sum_probs=18.0
Q ss_pred HHHHHHHHHhCCCceEEEEeCC
Q 016648 197 LDFLKRVMDRLPEARIAFIGDG 218 (385)
Q Consensus 197 ~~~l~~a~~~~~~~~l~i~G~g 218 (385)
...+.++++.+|+.+++++|+.
T Consensus 52 ~~~i~~i~~~fP~~kfiLIGDs 73 (100)
T PF09949_consen 52 RDNIERILRDFPERKFILIGDS 73 (100)
T ss_pred HHHHHHHHHHCCCCcEEEEeeC
Confidence 5567778888899999999954
No 409
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=23.72 E-value=3.6e+02 Score=23.50 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=45.5
Q ss_pred cccHHHHHHHHHhC----CCceEEEEeCCccHHHHHHHH-cCCCeEEecccCh---HHHHHHHHhCcEEEEcCCCCCCcH
Q 016648 194 EKSLDFLKRVMDRL----PEARIAFIGDGPYREELEKMF-TGMPAVFTGMLLG---EELSQAYASGDVFVMPSESETLGL 265 (385)
Q Consensus 194 ~k~~~~l~~a~~~~----~~~~l~i~G~g~~~~~l~~~~-~~~~i~~~g~~~~---~~~~~~~~~adi~v~ps~~e~~~~ 265 (385)
.|+-..+..+.+.+ +.-+++++|++...-....-+ ...++.-.||+.. +.+..++..-|+++.--..-..+.
T Consensus 192 ~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~igfln~~~e~~l~~y~~~~Divl~~D~t~~v~~ 271 (277)
T TIGR01544 192 NKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVQDETLEVAN 271 (277)
T ss_pred ccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEEecccCHHHHHHHHHHhCCEEEECCCCchHHH
Confidence 35444443444333 446799999875432222222 1236888898876 357789999999997544444455
Q ss_pred HHHH
Q 016648 266 VVLE 269 (385)
Q Consensus 266 ~~~E 269 (385)
.+++
T Consensus 272 ~il~ 275 (277)
T TIGR01544 272 SILQ 275 (277)
T ss_pred HHHh
Confidence 5554
No 410
>COG3580 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.72 E-value=5.2e+02 Score=22.94 Aligned_cols=97 Identities=13% Similarity=0.102 Sum_probs=52.5
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCC--CeEEecccChHHHHHHHHh-CcEEEEc
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM--PAVFTGMLLGEELSQAYAS-GDVFVMP 257 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~--~i~~~g~~~~~~~~~~~~~-adi~v~p 257 (385)
++-+|+..-.+.-......+-..+..+ ++++++ .+...++...+-.+.. .+.|---+++--+..++.. +|...+|
T Consensus 20 ~r~~IGiPRvLn~ye~yPff~tffteL-Gf~VVl-S~~S~kely~~G~~ti~sevCfPaki~HGHi~~L~~K~~d~IFyP 97 (351)
T COG3580 20 GRGTIGIPRVLNMYEYYPFFHTFFTEL-GFRVVL-SPKSSKELYEKGIETIPSEVCFPAKISHGHIMDLIKKGIDYIFYP 97 (351)
T ss_pred CcceecchHHHHHhhccHHHHHHHHHc-CceEEe-CCCCcHHHHHhhhhhCCccceeceeechhHHHHHHHcCCCeEEec
Confidence 344555555554455555555555554 455333 3333333222222211 2666666677777888887 9999999
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEe
Q 016648 258 SESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 258 s~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
+...-.+.- .+--...||+|++
T Consensus 98 ~l~~~~~E~-~a~n~~~CP~V~~ 119 (351)
T COG3580 98 CLRYIKSEQ-SANNHYNCPIVQS 119 (351)
T ss_pred ccccccccc-cccccccCccccC
Confidence 864333322 2223356888876
No 411
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=23.69 E-value=4e+02 Score=21.57 Aligned_cols=108 Identities=17% Similarity=0.177 Sum_probs=56.4
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCC-CCCCcHHHHHHHhc--CCcEEEec-CC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS--GIPVVGVR-AG 283 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a~--G~PvI~s~-~~ 283 (385)
+++++.+.+. ...+.......+.......+..+....+. ..|++++-.. .+..|..+++.+.. ..|+|... ..
T Consensus 3 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt~~~ 82 (225)
T PRK10529 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLSARS 82 (225)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEECCC
Confidence 4555554432 23344444333433333333333333333 2577776543 33445566655543 57777542 22
Q ss_pred CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 284 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 284 ~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
...........|..+++..|-+.+++.+.+..++.
T Consensus 83 ~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 83 EESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred CHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 22211111145677899999999999998887764
No 412
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=23.57 E-value=2.5e+02 Score=24.76 Aligned_cols=39 Identities=18% Similarity=-0.002 Sum_probs=28.1
Q ss_pred CCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcc
Q 016648 63 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVY 101 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~ 101 (385)
..|+|..|+.+......+..++..++++.+.+-+..|..
T Consensus 119 dg~~IlTh~~S~~v~~~l~~A~~~~k~~~V~VtESRP~~ 157 (301)
T COG1184 119 DGDVILTHSFSKTVLEVLKTAADRGKRFKVIVTESRPRG 157 (301)
T ss_pred CCCEEEEecCcHHHHHHHHHhhhcCCceEEEEEcCCCcc
Confidence 779999998767766666677777776666666655544
No 413
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=23.56 E-value=4e+02 Score=21.61 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=26.2
Q ss_pred HhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe-cCCCCCccc
Q 016648 249 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGGIPDII 289 (385)
Q Consensus 249 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s-~~~~~~e~~ 289 (385)
..-|++++.... .-...+.||..+|+|+|+- |....+..+
T Consensus 126 ~~Pdlviv~~~~-~~~~ai~Ea~~l~IP~I~i~Dtn~~~~~i 166 (193)
T cd01425 126 RLPDLVIVLDPR-KEHQAIREASKLGIPVIAIVDTNCDPDLI 166 (193)
T ss_pred cCCCEEEEeCCc-cchHHHHHHHHcCCCEEEEecCCCCCccc
Confidence 455776665432 2377899999999999975 333334444
No 414
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=23.54 E-value=3.4e+02 Score=20.67 Aligned_cols=37 Identities=19% Similarity=0.141 Sum_probs=26.8
Q ss_pred CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHH
Q 016648 232 PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEA 270 (385)
Q Consensus 232 ~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea 270 (385)
.+...|.-.++.+ .+..||+.++.-..|+.+..++|+
T Consensus 95 k~vmVGnGaND~l--aLr~ADlGI~tiq~e~v~~r~l~~ 131 (152)
T COG4087 95 KVVMVGNGANDIL--ALREADLGICTIQQEGVPERLLLT 131 (152)
T ss_pred EEEEecCCcchHH--HhhhcccceEEeccCCcchHHHhh
Confidence 4667777655554 588899988877778887777765
No 415
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=23.21 E-value=3.7e+02 Score=24.82 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=35.2
Q ss_pred CceEEEEeCCccHHHHHHHHcCC----------CeEEecccChHHHHHHHHhCcEEEEcCCC
Q 016648 209 EARIAFIGDGPYREELEKMFTGM----------PAVFTGMLLGEELSQAYASGDVFVMPSES 260 (385)
Q Consensus 209 ~~~l~i~G~g~~~~~l~~~~~~~----------~i~~~g~~~~~~~~~~~~~adi~v~ps~~ 260 (385)
+..+.|++.|.....+++.++.. ++...-+.|.+++.+++++++.++..-..
T Consensus 259 dAe~~iV~~Gs~~~~~~eav~~lr~~G~kvg~l~i~~~~PfP~~~i~~~l~~~k~ViVvE~n 320 (390)
T PRK08366 259 DADFVFMGMGSLMGTVKEAVDLLRKEGYKVGYAKVRWFRPFPKEELYEIAESVKGIAVLDRN 320 (390)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHhcCCceeeEEEeeecCCCHHHHHHHHhcCCEEEEEeCC
Confidence 45677777666544333333211 36677788889999999999988876554
No 416
>PRK06436 glycerate dehydrogenase; Provisional
Probab=23.21 E-value=3e+02 Score=24.30 Aligned_cols=37 Identities=16% Similarity=0.353 Sum_probs=22.3
Q ss_pred HHHHHHHHhCcEEEE--cCCCC---CCcHHHHHHHhcCCcEE
Q 016648 242 EELSQAYASGDVFVM--PSESE---TLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 242 ~~~~~~~~~adi~v~--ps~~e---~~~~~~~Ea~a~G~PvI 278 (385)
.++.+++++||++++ |...+ -++...++.|--|.-+|
T Consensus 165 ~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI 206 (303)
T PRK06436 165 MEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAII 206 (303)
T ss_pred CCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE
Confidence 356777888888775 33222 23556666666665555
No 417
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=23.16 E-value=4e+02 Score=21.46 Aligned_cols=108 Identities=19% Similarity=0.275 Sum_probs=57.7
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCC-CCCcHHHHHHHhc--CCcEEEec-CC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMSS--GIPVVGVR-AG 283 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a~--G~PvI~s~-~~ 283 (385)
+++++.+... ...+.......+......-+.++....+. ..|+++..... ..-|..+++.+.. +.|+|... ..
T Consensus 4 ~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~~~~ 83 (221)
T PRK10766 4 HILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQHVDLILLDINLPGEDGLMLTRELRSRSTVGIILVTGRT 83 (221)
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEECCC
Confidence 4556664432 23344444333433333333355555554 35777765432 2335556655543 57776542 22
Q ss_pred CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 284 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 284 ~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
...........|..+++..|.+.+++...+..++.
T Consensus 84 ~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~ 118 (221)
T PRK10766 84 DSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLW 118 (221)
T ss_pred cHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHh
Confidence 22222111145667888999999999988887654
No 418
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=22.38 E-value=1.7e+02 Score=25.63 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=25.1
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhC-CCEEEEEe
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLC-VPIVMSYH 95 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~-~p~v~~~h 95 (385)
....+.+.+...+||+|++.+.... ..+.....+ +|+|+..-
T Consensus 47 ~~~~~~~~l~~~~~DlIi~~gt~aa---~~~~~~~~~~iPVVf~~V 89 (294)
T PF04392_consen 47 KLRQIARKLKAQKPDLIIAIGTPAA---QALAKHLKDDIPVVFCGV 89 (294)
T ss_dssp HHHHHHHHHCCTS-SEEEEESHHHH---HHHHHH-SS-S-EEEECE
T ss_pred HHHHHHHHHhcCCCCEEEEeCcHHH---HHHHHhcCCCcEEEEEec
Confidence 3556666777889999999874222 222344556 99998654
No 419
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=22.32 E-value=4.8e+02 Score=21.99 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=27.0
Q ss_pred cEEEEcCCCCCCcHHHHHHHhcCCcEEEe-cCCCCCccc
Q 016648 252 DVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGGIPDII 289 (385)
Q Consensus 252 di~v~ps~~e~~~~~~~Ea~a~G~PvI~s-~~~~~~e~~ 289 (385)
|++|.....|. ..+++||.-+++|+|+- |....++++
T Consensus 175 D~vvvln~~e~-~sAilEA~K~~IPTIgIVDtN~~P~li 212 (251)
T KOG0832|consen 175 DLVVVLNPEEN-HSAILEAAKMAIPTIGIVDTNCNPELI 212 (251)
T ss_pred ceeEecCcccc-cHHHHHHHHhCCCeEEEecCCCCccce
Confidence 88777665444 56899999999999975 444556665
No 420
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.64 E-value=5.3e+02 Score=22.30 Aligned_cols=98 Identities=13% Similarity=0.090 Sum_probs=51.9
Q ss_pred EEEEEeeccccccHHHHHHHHHhCC--CceEEEEe-----------CCc---cHHHHHHHHcCCCeEEec-ccChHHHHH
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRLP--EARIAFIG-----------DGP---YREELEKMFTGMPAVFTG-MLLGEELSQ 246 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~~--~~~l~i~G-----------~g~---~~~~l~~~~~~~~i~~~g-~~~~~~~~~ 246 (385)
.++.+| ...-.+.+.+++.++++. ..+++..| .|. ..+.+.+...+.++-+.- ..+..++..
T Consensus 28 ~~~iaG-PCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~ 106 (266)
T PRK13398 28 KIIIAG-PCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEE 106 (266)
T ss_pred EEEEEe-CCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHH
Confidence 344444 333345556666555552 34555555 111 123445555555654433 333345555
Q ss_pred HHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecC
Q 016648 247 AYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 247 ~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~ 282 (385)
+...+|++-.+++.-..-.-+-++-..|+||+.++-
T Consensus 107 l~~~vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G 142 (266)
T PRK13398 107 VADYADMLQIGSRNMQNFELLKEVGKTKKPILLKRG 142 (266)
T ss_pred HHHhCCEEEECcccccCHHHHHHHhcCCCcEEEeCC
Confidence 555589888888733322234455567999998764
No 421
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=21.64 E-value=2.7e+02 Score=25.55 Aligned_cols=47 Identities=19% Similarity=0.102 Sum_probs=32.9
Q ss_pred hHHHHHHhhccCCCEEEeCCCc-hhHHHHHHHHHHhCCCEEEEEecCC
Q 016648 52 SPRIISEVARFKPDIIHASSPG-IMVFGALIIAKLLCVPIVMSYHTHV 98 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~-~~~~~~~~~~~~~~~p~v~~~h~~~ 98 (385)
+....+..-+.+||+|++-... .-....++.+...|.+++.|+|...
T Consensus 214 ~~~~l~~aLR~~PD~I~vGEiRd~et~~~al~aa~TGH~v~tTlHa~s 261 (372)
T TIGR02525 214 FANGIRLALRRAPKIIGVGEIRDLETFQAAVLAGQSGHFCLGTLHVKS 261 (372)
T ss_pred HHHHHHHhhccCCCEEeeCCCCCHHHHHHHHHHHhcCCcEEEeeCCCC
Confidence 4556666667799999998653 2233334556778999999999954
No 422
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=21.42 E-value=3e+02 Score=25.62 Aligned_cols=46 Identities=15% Similarity=0.214 Sum_probs=31.6
Q ss_pred hHHHHHHhhccCCCEEEeC---CCchhHHHHHH----HHHHhCCCEEEEEecC
Q 016648 52 SPRIISEVARFKPDIIHAS---SPGIMVFGALI----IAKLLCVPIVMSYHTH 97 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~---~~~~~~~~~~~----~~~~~~~p~v~~~h~~ 97 (385)
..++.+.+++.+||++++- +.+-++.++.. .....++|.+..++.-
T Consensus 65 ~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaMy~E 117 (431)
T TIGR01917 65 KAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAMYEE 117 (431)
T ss_pred HHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence 4788999999999999995 22333333222 3345899999877653
No 423
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=21.39 E-value=3.8e+02 Score=25.85 Aligned_cols=35 Identities=23% Similarity=0.108 Sum_probs=27.2
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIV 91 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v 91 (385)
=...+...+.+.+||+++.++.. ..+++..|+|++
T Consensus 425 Dl~~l~~~l~~~~~DlliG~s~~------k~~a~~~giPli 459 (515)
T TIGR01286 425 DLWHLRSLVFTEPVDFLIGNSYG------KYIQRDTLVPLI 459 (515)
T ss_pred CHHHHHHHHhhcCCCEEEECchH------HHHHHHcCCCEE
Confidence 35678888899999999998752 335677899986
No 424
>PF00926 DHBP_synthase: 3,4-dihydroxy-2-butanone 4-phosphate synthase; InterPro: IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase (4.1.99.12 from EC) (DHBP synthase) (RibB) catalyses the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate, the latter serving as the biosynthetic precursor for the xylene ring of riboflavin []. In Photobacterium leiognathi, the riboflavin synthesis genes ribB (DHBP synthase), ribE (riboflavin synthase), ribH (lumazone synthase) and ribA (GTP cyclohydrolase II) all reside in the lux operon []. RibB is sometimes found as a bifunctional enzyme with GTP cyclohydrolase II that catalyses the first committed step in the biosynthesis of riboflavin (IPR000926 from INTERPRO). No sequences with significant homology to DHBP synthase are found in the metazoa.; GO: 0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity, 0009231 riboflavin biosynthetic process; PDB: 1K4O_A 1K4L_A 1K4P_A 1K49_A 1K4I_A 1TKU_A 1TKS_B 2RIS_A 2RIU_A 3MIO_A ....
Probab=21.39 E-value=2.1e+02 Score=23.41 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=15.2
Q ss_pred HHHHHHhcCCcEEEecCCC
Q 016648 266 VVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 266 ~~~Ea~a~G~PvI~s~~~~ 284 (385)
.++|++..|.|||..|..+
T Consensus 3 ~ai~al~~G~~Viv~D~~~ 21 (194)
T PF00926_consen 3 EAIEALKAGKPVIVVDDED 21 (194)
T ss_dssp HHHHHHHTTS-EEEECSST
T ss_pred HHHHHHHCCCeEEEEeCCC
Confidence 4789999999999988654
No 425
>PRK08223 hypothetical protein; Validated
Probab=21.35 E-value=2.8e+02 Score=24.32 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=28.2
Q ss_pred ccChHHHHHHHHhCcEEEEcCCCCCCcH--HH-HHHHhcCCcEEEecCCC
Q 016648 238 MLLGEELSQAYASGDVFVMPSESETLGL--VV-LEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 238 ~~~~~~~~~~~~~adi~v~ps~~e~~~~--~~-~Ea~a~G~PvI~s~~~~ 284 (385)
.++.++..+++..+|++|-.+-.-.+.. .+ --+..+|+|+|.....+
T Consensus 105 ~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g 154 (287)
T PRK08223 105 GIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG 154 (287)
T ss_pred ccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence 3344667788999999884432111122 12 24677899999875444
No 426
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=21.35 E-value=1.8e+02 Score=19.86 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=30.7
Q ss_pred CcEEEEEeec-cc--cccHHHHHHHHHhCC---CceEEEEeCCccHHHHHHHHcCC
Q 016648 182 KPLIVHVGRL-GV--EKSLDFLKRVMDRLP---EARIAFIGDGPYREELEKMFTGM 231 (385)
Q Consensus 182 ~~~i~~~G~~-~~--~k~~~~l~~a~~~~~---~~~l~i~G~g~~~~~l~~~~~~~ 231 (385)
+++++++... .+ .+.+..+.++.++++ +++++.+......+..++..++.
T Consensus 2 K~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 2 KPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 4455555543 22 244566666666666 67888888767777777777766
No 427
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=21.27 E-value=56 Score=24.24 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=18.0
Q ss_pred cchHHHHHHhhccCCCEEEeCCCc
Q 016648 50 ALSPRIISEVARFKPDIIHASSPG 73 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~ 73 (385)
.....+.+++++.+||+|+++++.
T Consensus 87 ~~~~~l~~~i~~~~p~~V~t~~~~ 110 (128)
T PF02585_consen 87 ELVRDLEDLIREFRPDVVFTPDPD 110 (128)
T ss_dssp HHHHHHHHHHHHH-ESEEEEE-ST
T ss_pred HHHHHHHHHHHHcCCCEEEECCCC
Confidence 346678889999999999998763
No 428
>PRK08618 ornithine cyclodeaminase; Validated
Probab=21.21 E-value=2.3e+02 Score=25.31 Aligned_cols=100 Identities=10% Similarity=0.143 Sum_probs=53.0
Q ss_pred CCCcEEEEEeeccccccHHHHHHHHHhCCCc-eEEEEeCCccH-HHHHHHHc-CCCeEEecccChHHHHHHHHhCcEEEE
Q 016648 180 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPEA-RIAFIGDGPYR-EELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVM 256 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~-~l~i~G~g~~~-~~l~~~~~-~~~i~~~g~~~~~~~~~~~~~adi~v~ 256 (385)
++...++.+|.-...+. .+.++....++ ++.+++..+.. +.+.+... ..++.+... ++..+.+..+|+++.
T Consensus 125 ~~~~~v~iiGaG~~a~~---~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~aDiVi~ 198 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKG---QLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVV---NSADEAIEEADIIVT 198 (325)
T ss_pred CCCcEEEEECCcHHHHH---HHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEe---CCHHHHHhcCCEEEE
Confidence 35567788886544332 22333333333 45566644322 22222221 223332222 556677899999987
Q ss_pred cCCCCCCcHHHHHHHhcCCcEEE--ecCCCCCc
Q 016648 257 PSESETLGLVVLEAMSSGIPVVG--VRAGGIPD 287 (385)
Q Consensus 257 ps~~e~~~~~~~Ea~a~G~PvI~--s~~~~~~e 287 (385)
.+... -|.-- |.+..|+-|++ ++.++..|
T Consensus 199 aT~s~-~p~i~-~~l~~G~hV~~iGs~~p~~~E 229 (325)
T PRK08618 199 VTNAK-TPVFS-EKLKKGVHINAVGSFMPDMQE 229 (325)
T ss_pred ccCCC-CcchH-HhcCCCcEEEecCCCCccccc
Confidence 66533 35555 88889998864 34444554
No 429
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=21.20 E-value=1.7e+02 Score=16.40 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=22.5
Q ss_pred CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHh
Q 016648 305 DLDDCLSKLEPLLYNQELRETMGQAARQEMEK 336 (385)
Q Consensus 305 ~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~ 336 (385)
|+.-.+.-+...+.||...++-.+.+++.+++
T Consensus 2 ~~~~V~~G~KAal~NPnvSeeaK~~A~~~Le~ 33 (36)
T PF10346_consen 2 DPNNVAGGYKAALHNPNVSEEAKQHAREKLEE 33 (36)
T ss_pred cHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHH
Confidence 44556667777888888777777777776644
No 430
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.01 E-value=3.1e+02 Score=25.53 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=31.6
Q ss_pred hHHHHHHhhccCCCEEEeC---CCchhHHHHHH----HHHHhCCCEEEEEecC
Q 016648 52 SPRIISEVARFKPDIIHAS---SPGIMVFGALI----IAKLLCVPIVMSYHTH 97 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~---~~~~~~~~~~~----~~~~~~~p~v~~~h~~ 97 (385)
..++.+.+++.+||++++- +.+-++.++.. .....++|.+..++.-
T Consensus 65 ~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~My~E 117 (431)
T TIGR01918 65 VARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSMYVE 117 (431)
T ss_pred HHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEeccc
Confidence 4788999999999999995 22333333222 3345899999877653
No 431
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=20.97 E-value=2.4e+02 Score=25.23 Aligned_cols=47 Identities=13% Similarity=0.152 Sum_probs=26.4
Q ss_pred ccccchHHHHHHhhc----cCCC-EEEeCCCchhHHHHHHHHHH---hCCCEEEE
Q 016648 47 LSLALSPRIISEVAR----FKPD-IIHASSPGIMVFGALIIAKL---LCVPIVMS 93 (385)
Q Consensus 47 ~~~~~~~~l~~~i~~----~~pD-iI~~~~~~~~~~~~~~~~~~---~~~p~v~~ 93 (385)
.+..-+.++.+.+++ ..+| +|+.|+...+...+.++... .++|+|++
T Consensus 57 ~t~~~w~~la~~i~~~~~~~~~dG~VVtHGTDTmeeTA~~Ls~~l~~l~kPVVlT 111 (323)
T smart00870 57 MTPADWLKLAKRINEALADDGYDGVVVTHGTDTLEETAYFLSLTLDSLDKPVVLT 111 (323)
T ss_pred CCHHHHHHHHHHHHHHhccCCCCEEEEecCCccHHHHHHHHHHHhhcCCCCEEEE
Confidence 343444555555544 4566 56667665555444444322 37899986
No 432
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=20.95 E-value=3.8e+02 Score=24.67 Aligned_cols=14 Identities=21% Similarity=0.340 Sum_probs=9.2
Q ss_pred HHHHHHHhCcEEEE
Q 016648 243 ELSQAYASGDVFVM 256 (385)
Q Consensus 243 ~~~~~~~~adi~v~ 256 (385)
++.+++++||++++
T Consensus 160 ~l~ell~~aDiV~l 173 (381)
T PRK00257 160 SLERILEECDVISL 173 (381)
T ss_pred CHHHHHhhCCEEEE
Confidence 46667777777553
No 433
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=20.94 E-value=2.4e+02 Score=19.76 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=37.4
Q ss_pred EEEEeCCcc----HHHHHHHHcCCCeEE-ecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHH--HHhcCCcEEEecC
Q 016648 212 IAFIGDGPY----REELEKMFTGMPAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLE--AMSSGIPVVGVRA 282 (385)
Q Consensus 212 l~i~G~g~~----~~~l~~~~~~~~i~~-~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~E--a~a~G~PvI~s~~ 282 (385)
++++|.|-. .+.+++.+.+.++.+ .-..+..++......+|+++...... +-..-++ +.-.++||..-+.
T Consensus 3 l~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil~~Pqv~-~~~~~i~~~~~~~~~pv~~I~~ 79 (96)
T cd05564 3 LLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVLLGPQVR-YMLDEVKKKAAEYGIPVAVIDM 79 (96)
T ss_pred EEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEEEChhHH-HHHHHHHHHhccCCCcEEEcCh
Confidence 345665542 335555555554322 22233367777788999887654321 1222233 3457899987543
No 434
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.91 E-value=2.7e+02 Score=21.82 Aligned_cols=46 Identities=13% Similarity=0.092 Sum_probs=28.6
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhH-------HHHHHHHHHhCCCEEEEEec
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMV-------FGALIIAKLLCVPIVMSYHT 96 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~-------~~~~~~~~~~~~p~v~~~h~ 96 (385)
|..++....--++||||+|-+-..+. -.+..++.+.|+|++-+...
T Consensus 112 WlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~ 164 (219)
T KOG0081|consen 112 WLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSAC 164 (219)
T ss_pred HHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccc
Confidence 34455555566799999997531111 12445678889999865433
No 435
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=20.84 E-value=4.3e+02 Score=22.72 Aligned_cols=54 Identities=22% Similarity=0.254 Sum_probs=33.9
Q ss_pred CCeEEecc-cCh---HHHHHHHHhCcEEEEcCC-CCCC--cHHHHHHHhcCCcEEEecCCC
Q 016648 231 MPAVFTGM-LLG---EELSQAYASGDVFVMPSE-SETL--GLVVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 231 ~~i~~~g~-~~~---~~~~~~~~~adi~v~ps~-~e~~--~~~~~Ea~a~G~PvI~s~~~~ 284 (385)
.+|.+.|. ++. +...+.+++||++|+-.. .... ..-+.+|...|.|+|.-|...
T Consensus 181 P~VV~FGE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~ 241 (260)
T cd01409 181 PDVVFFGENVPRDRVVTAAARLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGP 241 (260)
T ss_pred CCEEECCCCCCHHHHHHHHHHHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCC
Confidence 35666665 443 345677888999876432 2222 233456888999999877653
No 436
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=20.83 E-value=4.2e+02 Score=21.83 Aligned_cols=54 Identities=20% Similarity=0.075 Sum_probs=33.7
Q ss_pred CCCeEEecc-cCh---HHHHHHHHhCcEEEEcCC-CCCCc--HHHHHHHhcCCcEEEecCC
Q 016648 230 GMPAVFTGM-LLG---EELSQAYASGDVFVMPSE-SETLG--LVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 230 ~~~i~~~g~-~~~---~~~~~~~~~adi~v~ps~-~e~~~--~~~~Ea~a~G~PvI~s~~~ 283 (385)
+.+|.+.|. +|. ++..+.+++||++|.--. ....| .-+.++...|.|+|.-+..
T Consensus 131 rP~VV~FgE~lp~~~~~~a~~~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~ 191 (206)
T cd01410 131 KDTIVDFGERLPPENWMGAAAAACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQ 191 (206)
T ss_pred CCcEEECCCCCCHHHHHHHHHHHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCC
Confidence 446776665 453 356677788999876422 22223 2344677889999876654
No 437
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=20.65 E-value=3.6e+02 Score=22.50 Aligned_cols=35 Identities=29% Similarity=0.466 Sum_probs=25.9
Q ss_pred HhCcEEE-EcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 249 ASGDVFV-MPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 249 ~~adi~v-~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
+..|.++ .|...+.....+-++...|+|||+.+.+
T Consensus 54 ~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~ 89 (257)
T PF13407_consen 54 QGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD 89 (257)
T ss_dssp TTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred hcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence 3467655 4555566677788888999999998777
No 438
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=20.56 E-value=4.7e+02 Score=21.21 Aligned_cols=68 Identities=21% Similarity=0.371 Sum_probs=40.5
Q ss_pred CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEecC-CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 251 GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 251 adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s~~-~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.|++++-.. .+..|..+++.+. .++|+|.... ............|..+++..|.+.+++...+..++.
T Consensus 45 ~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 45 YDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 577776433 2334555555554 3578875432 222221111145677889999999999998887764
No 439
>PRK14851 hypothetical protein; Provisional
Probab=20.51 E-value=6.2e+02 Score=25.53 Aligned_cols=48 Identities=17% Similarity=0.209 Sum_probs=30.3
Q ss_pred cccChHHHHHHHHhCcEEEEcCCCCCCcH--HHH-HHHhcCCcEEEecCCC
Q 016648 237 GMLLGEELSQAYASGDVFVMPSESETLGL--VVL-EAMSSGIPVVGVRAGG 284 (385)
Q Consensus 237 g~~~~~~~~~~~~~adi~v~ps~~e~~~~--~~~-Ea~a~G~PvI~s~~~~ 284 (385)
..++.+++.+++.++|++|-..-...+.. .+. .+...|+|+|.....+
T Consensus 120 ~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G 170 (679)
T PRK14851 120 AGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG 170 (679)
T ss_pred cCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence 34555778888999999885543212221 233 4667899999775443
No 440
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=20.41 E-value=3.7e+02 Score=23.69 Aligned_cols=56 Identities=16% Similarity=0.170 Sum_probs=36.9
Q ss_pred eEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEe
Q 016648 127 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVG 189 (385)
Q Consensus 127 ~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G 189 (385)
.|++....+.+..+...+...+-..++|.|.|+..|++.+...... .+.-.+++.|
T Consensus 34 ~Vvtt~~~~~d~~~~I~gd~~~V~~iv~~g~dpH~yepsp~di~~i-------~~ADliv~nG 89 (303)
T COG0803 34 KVVTTFPPIADVVKNIAGDKVDVVSLVPPGADPHSYEPTPSDIAKL-------RKADLIVYNG 89 (303)
T ss_pred eEEEecHHHHHHHHHhcCCceeEEEecCCCCCCcCCCCCHHHHHHH-------HhCCEEEEcC
Confidence 4666667777777777764444455889999999998875543322 2334566766
No 441
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=20.34 E-value=4.3e+02 Score=21.52 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred ecccChHHHHHHHHhCcEEEEcCC-CCCCcHHHHHH-----HhcCCcEEEecCCCC-------CcccccCCCCCeeEeeC
Q 016648 236 TGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEA-----MSSGIPVVGVRAGGI-------PDIIPEDQDGKIGYLFN 302 (385)
Q Consensus 236 ~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea-----~a~G~PvI~s~~~~~-------~e~~~~~~~~~~g~~~~ 302 (385)
+.+-+...-..-+++||++|.-.. .|++-.++.+. ..-|++.+....... .+.- ...+.-+..+
T Consensus 37 H~ye~tp~d~~~l~~Adliv~~G~~~E~~~~k~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~dPH~Wld 113 (203)
T cd01145 37 HQYQLKPSDIAKMRKADLVVTSGHELEGFEPKLAELSSNSKVQPGIKILIEDSDTVGMVDRAMGDYH---GKGNPHVWLD 113 (203)
T ss_pred ccccCCHHHHHHHhcCCEEEEcCCCHHHHHHHHHHhccccccCCCcccccccccccccccccccccC---CCCCcCeecC
Q ss_pred CCCHHHHHHHHhHhhc--CHHHHHHHHHHHHHHHHh-CCHHHHHHHHHH
Q 016648 303 PGDLDDCLSKLEPLLY--NQELRETMGQAARQEMEK-YDWRAATRTIRN 348 (385)
Q Consensus 303 ~~~~~~l~~~i~~ll~--~~~~~~~~~~~a~~~~~~-~s~~~~~~~~~~ 348 (385)
+.+...+++.|.+.+. +|+..+...+++.++.++ -..++..++.++
T Consensus 114 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l~ 162 (203)
T cd01145 114 PNNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQFE 162 (203)
T ss_pred HHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 442
>COG1273 Ku-homolog [Replication, recombination, and repair]
Probab=20.31 E-value=2.9e+02 Score=23.75 Aligned_cols=138 Identities=14% Similarity=0.135 Sum_probs=72.2
Q ss_pred HHHHHHHcCC--CeEEecccChHHHHHHHHhCcEEEEcCCCCCCc-HHHHHHHhcCCcE-EEecCCC---CCcccccCCC
Q 016648 222 EELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLG-LVVLEAMSSGIPV-VGVRAGG---IPDIIPEDQD 294 (385)
Q Consensus 222 ~~l~~~~~~~--~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~-~~~~Ea~a~G~Pv-I~s~~~~---~~e~~~~~~~ 294 (385)
++++....+. -|.+..|++.+++..+|-..-.++.|....+=. ..+-|||+.-.-+ |+--+-. -.-.+ +.
T Consensus 79 eel~s~~~es~kti~I~~Fvp~~eId~iyfD~pYYl~Pd~~g~~af~lLReam~~~~~~aIar~vl~~Rer~v~L---rp 155 (278)
T COG1273 79 EELESVPLESTKTIEIEAFVPRDEIDPIYFDKPYYLAPDKVGEKAFALLREAMAETKKVAIARLVLRRRERLVLL---RP 155 (278)
T ss_pred HHHhhccccccceEeEEeecCHhhcCceeecCceeecCCCCcchHHHHHHHHHHHcCcchhhhhhhhccceeEEE---Ee
Confidence 4555554433 388999999999999999999999998422212 2356777653222 2111101 11122 22
Q ss_pred CCeeEeeC-------CCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhh
Q 016648 295 GKIGYLFN-------PGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWRKKRA 363 (385)
Q Consensus 295 ~~~g~~~~-------~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~~~~~~~~ 363 (385)
.++|++.. ..++++....|-..--|+++.+-..+-..+....|+.+...+.|. +-.-+++..+...++
T Consensus 156 ~~~glv~~TL~~~dEVRs~d~~f~~i~~~~~d~eml~lA~~lI~~~~~~fdp~~y~D~y~-~aL~elI~aK~~g~~ 230 (278)
T COG1273 156 RGKGLVLTTLRYPDEVRSPDEYFPGIPDIKIDPEMLELAKQLIDKKTGTFDPDEYEDRYQ-EALMELIEAKLEGRK 230 (278)
T ss_pred cCCcEEEEEecCchhccChhhhcCCCCcccCCHHHHHHHHHHHHHhcCCCChHHccCHHH-HHHHHHHHHHHhCCC
Confidence 33444332 123343333333332344433222222222224599999999996 455556665554444
No 443
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=20.29 E-value=5.1e+02 Score=22.33 Aligned_cols=38 Identities=29% Similarity=0.386 Sum_probs=24.9
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEe-cCCCCCccc
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGV-RAGGIPDII 289 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s-~~~~~~e~~ 289 (385)
-|++++..... -..++.||..+|+|+|+- |....++.+
T Consensus 158 Pd~iii~d~~~-~~~ai~Ea~kl~IPiIaivDTn~dp~~I 196 (258)
T PRK05299 158 PDALFVVDPNK-EHIAVKEARKLGIPVVAIVDTNCDPDGV 196 (258)
T ss_pred CCEEEEeCCCc-cHHHHHHHHHhCCCEEEEeeCCCCCccc
Confidence 46666544322 247899999999999975 444444444
No 444
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=20.27 E-value=4.9e+02 Score=21.37 Aligned_cols=108 Identities=14% Similarity=0.123 Sum_probs=57.4
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh--cCCcEEEecC-C
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--SGIPVVGVRA-G 283 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a--~G~PvI~s~~-~ 283 (385)
+++++.+.+. ...+.......+.......+.++....+.. .|++++-... +..|..+++.+. ...|+|.... .
T Consensus 3 ~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~~~~ 82 (240)
T PRK10701 3 KIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILREQPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLTSLD 82 (240)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 3555554432 333444443334333333344555555543 4777765432 334555555554 3467765432 2
Q ss_pred CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 284 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 284 ~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
...........|..+++..|.+.+++...+..++.
T Consensus 83 ~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~ 117 (240)
T PRK10701 83 SDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 (240)
T ss_pred CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHh
Confidence 21111111145667889999999999998887765
No 445
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=20.25 E-value=6.7e+02 Score=23.31 Aligned_cols=72 Identities=19% Similarity=0.103 Sum_probs=41.5
Q ss_pred CeEEecccChHHHHHHHHhCcEEEEcCCC---CCCcHHHHHH---HhcC----CcEEEecCCCCCcccccCCCCCeeEee
Q 016648 232 PAVFTGMLLGEELSQAYASGDVFVMPSES---ETLGLVVLEA---MSSG----IPVVGVRAGGIPDIIPEDQDGKIGYLF 301 (385)
Q Consensus 232 ~i~~~g~~~~~~~~~~~~~adi~v~ps~~---e~~~~~~~Ea---~a~G----~PvI~s~~~~~~e~~~~~~~~~~g~~~ 301 (385)
++++.-+.|.+.+.+++++++-++..... .+.|..+.|. +... .|+|.+...+ ..|.
T Consensus 300 ~~r~~~Pfp~~~l~~~l~~~k~VvVvE~~~~~Gg~G~l~~ev~~al~~~~~~~~~~v~~~~~g-----------~gG~-- 366 (407)
T PRK09622 300 TIRVLRPFPYERLGQALKNLKALAILDRSSPAGAMGALFNEVTSAVYQTQGTKHPVVSNYIYG-----------LGGR-- 366 (407)
T ss_pred EeeEhhhCCHHHHHHHHhcCCEEEEEeCCCCCCCccHHHHHHHHHHhccCcCCCceEeeeEEC-----------CCCC--
Confidence 36677788888899999999887766442 2445443333 3221 4655432222 1221
Q ss_pred CCCCHHHHHHHHhHhh
Q 016648 302 NPGDLDDCLSKLEPLL 317 (385)
Q Consensus 302 ~~~~~~~l~~~i~~ll 317 (385)
.-+++++.+.+.++.
T Consensus 367 -~~t~~~i~~~~~~l~ 381 (407)
T PRK09622 367 -DMTIAHLCEIFEELN 381 (407)
T ss_pred -CCCHHHHHHHHHHHH
Confidence 226777777776654
No 446
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=20.24 E-value=4.7e+02 Score=21.08 Aligned_cols=105 Identities=11% Similarity=0.125 Sum_probs=55.3
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh---cCCcEEEe-cC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RA 282 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~s-~~ 282 (385)
+++++.+.+. .+.+.......+.......+.++....+.. .|++++-... +..+..+++.+. ..+|+|.- ..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~ 84 (228)
T PRK11083 5 TILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQPPDLVILDVGLPDISGFELCRQLLAFHPALPVIFLTAR 84 (228)
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEcC
Confidence 4555554432 233333333333333333333444444433 5777664432 334555555554 35777643 22
Q ss_pred CCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 283 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 283 ~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
... ...+ ..|..+++..+.+.+++.+++..++.
T Consensus 85 ~~~~~~~~a~---~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 85 SDEVDRLVGL---EIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred CcHHHHHHHh---hcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 221 2233 55777889999999999988887664
No 447
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=20.23 E-value=7.2e+02 Score=23.26 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=46.9
Q ss_pred cccHHHHHHHHH-hC-----CCceEEEEeC---CccHHHHHHHHcCCCeE--Ee--------------------cccChH
Q 016648 194 EKSLDFLKRVMD-RL-----PEARIAFIGD---GPYREELEKMFTGMPAV--FT--------------------GMLLGE 242 (385)
Q Consensus 194 ~k~~~~l~~a~~-~~-----~~~~l~i~G~---g~~~~~l~~~~~~~~i~--~~--------------------g~~~~~ 242 (385)
..|.+...+++- ++ ++-.+.|+|. ..+.++++++.++.++. .+ |..+-+
T Consensus 134 ~~G~~~a~~al~~~~~~~~~~~~~VNlig~~~~~~D~~ei~~lL~~~Gl~~~~~~d~s~~~~~~~~~~~~~~~~~g~~~~ 213 (429)
T cd03466 134 VEGYDTAVRSIVKNIAVDPDKIEKINVIAGMMSPADIREIKEILREFGIEYILLPDTSETLDGPFWGEYHRLPSGGTPIS 213 (429)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCcEEEECCCCChhHHHHHHHHHHHcCCCeEEecCccccccCCCCCCcceeCCCCCCHH
Confidence 357776666553 22 2345778873 22456677777665433 22 222335
Q ss_pred HHHHHHHhCcEEEEcCCCCCCcHHHHHHHh--cCCcEEEec
Q 016648 243 ELSQAYASGDVFVMPSESETLGLVVLEAMS--SGIPVVGVR 281 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a--~G~PvI~s~ 281 (385)
++.. +.+|++-|.-+.....+..+.|+|. +|+|.+..+
T Consensus 214 ~i~~-~~~A~lniv~~~~~~~g~~~A~~L~e~~giP~~~~~ 253 (429)
T cd03466 214 EIKG-MGGAKATIELGMFVDHGLSAGSYLEEEFGIPNYRLP 253 (429)
T ss_pred HHHh-hccCcEEEEEccCccchHHHHHHHHHHHCCCeeecC
Confidence 5544 4455554443333344666666664 799977543
No 448
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=20.19 E-value=4.6e+02 Score=20.97 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=55.2
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCC-CCCcHHHHHHHhc---CCcEEEe-cC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMSS---GIPVVGV-RA 282 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a~---G~PvI~s-~~ 282 (385)
++.++.+.+. ...+.......+......-+.++....+. ..|++++.... +.-|..+++.+.. ..|+|.- ..
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~lt~~ 81 (219)
T PRK10336 2 RILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGRDILREWREKGQREPVLILTAR 81 (219)
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEEECC
Confidence 3445544332 23344444333333322222234444333 35787765432 3345566665543 4677644 32
Q ss_pred CCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 283 GGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 283 ~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.... +.+ ..|..+++..+.+.+++..++..++.
T Consensus 82 ~~~~~~~~~~---~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 82 DALAERVEGL---RLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred CCHHHHHHHH---hCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 2222 233 55777899999999999988887754
No 449
>PRK15062 hydrogenase isoenzymes formation protein HypD; Provisional
Probab=20.13 E-value=2.3e+02 Score=25.62 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=49.1
Q ss_pred cHHHHHHHHHhCCCceEEEEeCCccH------HHHHHHHcC--CCeEEe--cccChHHHHHHHHh----CcEEEEcCCC-
Q 016648 196 SLDFLKRVMDRLPEARIAFIGDGPYR------EELEKMFTG--MPAVFT--GMLLGEELSQAYAS----GDVFVMPSES- 260 (385)
Q Consensus 196 ~~~~l~~a~~~~~~~~l~i~G~g~~~------~~l~~~~~~--~~i~~~--g~~~~~~~~~~~~~----adi~v~ps~~- 260 (385)
.....++.+++.|+-++++.|-|-+. ..+.+...+ .|+.++ -.+...-+..++++ -|.+|.|...
T Consensus 117 SpldAl~iA~~nP~k~vVF~avGFETTaP~~A~~i~~A~~~~~~Nfsvl~~hkl~PPa~~~ll~~~~~~idgfi~PGHVs 196 (364)
T PRK15062 117 SPLDALKIARENPDKEVVFFAIGFETTAPATAATLLQAKAEGLKNFSVLSSHKLVPPAMRALLEDPELRIDGFIAPGHVS 196 (364)
T ss_pred CHHHHHHHHHHCCCCeEEEEecCchhccHHHHHHHHHHHHcCCCCEEEEEeccccHHHHHHHHcCCCCCccEEEecCEeE
Confidence 35567778888888888888866432 122221111 244332 22333456666655 4678888663
Q ss_pred CCCcHHHHHHH--hcCCcEEEec
Q 016648 261 ETLGLVVLEAM--SSGIPVVGVR 281 (385)
Q Consensus 261 e~~~~~~~Ea~--a~G~PvI~s~ 281 (385)
--.|...+|.+ -+|+|++.+.
T Consensus 197 tI~G~~~y~~l~~~y~~P~VVaG 219 (364)
T PRK15062 197 TIIGTEPYEFLAEEYGIPVVVAG 219 (364)
T ss_pred EEeccchhHHHHHHcCCCeEEec
Confidence 23466666655 4578888654
No 450
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=20.03 E-value=3.1e+02 Score=22.37 Aligned_cols=45 Identities=16% Similarity=0.112 Sum_probs=26.8
Q ss_pred HHHHHHhCcEEEEcCCCCCCcHHHHHH-HhcCCcEEEecCCCCCcc
Q 016648 244 LSQAYASGDVFVMPSESETLGLVVLEA-MSSGIPVVGVRAGGIPDI 288 (385)
Q Consensus 244 ~~~~~~~adi~v~ps~~e~~~~~~~Ea-~a~G~PvI~s~~~~~~e~ 288 (385)
..++++++|+++........-..+-++ ...|+|.|.....+....
T Consensus 104 ~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~ 149 (197)
T cd01492 104 PEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGF 149 (197)
T ss_pred HHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEE
Confidence 355678899988765432222233333 447899998776554433
Done!