Query 016648
Match_columns 385
No_of_seqs 363 out of 2670
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 17:07:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jjm_A Glycosyl transferase, g 100.0 2.4E-40 8E-45 302.9 31.0 295 49-358 85-389 (394)
2 3okp_A GDP-mannose-dependent a 100.0 3.5E-40 1.2E-44 301.8 30.3 295 50-359 73-384 (394)
3 3c48_A Predicted glycosyltrans 100.0 2.2E-39 7.6E-44 300.6 29.9 296 55-356 112-427 (438)
4 3fro_A GLGA glycogen synthase; 100.0 7.7E-40 2.6E-44 303.7 25.3 288 61-356 120-432 (439)
5 2r60_A Glycosyl transferase, g 100.0 1.5E-39 5E-44 306.7 24.7 303 53-360 108-465 (499)
6 2gek_A Phosphatidylinositol ma 100.0 3.3E-39 1.1E-43 296.5 19.1 283 52-357 96-386 (406)
7 2qzs_A Glycogen synthase; glyc 100.0 3.1E-38 1.1E-42 296.7 25.6 299 53-359 115-481 (485)
8 1rzu_A Glycogen synthase 1; gl 100.0 1.7E-38 5.9E-43 298.4 23.1 292 60-359 127-480 (485)
9 3oy2_A Glycosyltransferase B73 100.0 5.7E-38 2E-42 288.9 22.0 281 51-360 69-396 (413)
10 3s28_A Sucrose synthase 1; gly 100.0 2.8E-37 9.5E-42 299.1 24.5 290 62-356 406-771 (816)
11 2iuy_A Avigt4, glycosyltransfe 100.0 4.2E-37 1.4E-41 275.9 18.5 250 52-356 73-337 (342)
12 3vue_A GBSS-I, granule-bound s 100.0 3.2E-36 1.1E-40 283.0 22.8 287 63-355 153-512 (536)
13 2x6q_A Trehalose-synthase TRET 100.0 4.9E-36 1.7E-40 276.2 23.0 278 53-355 116-415 (416)
14 2iw1_A Lipopolysaccharide core 100.0 1.3E-36 4.5E-41 276.1 12.1 290 51-355 68-372 (374)
15 2x0d_A WSAF; GT4 family, trans 100.0 8.9E-33 3.1E-37 252.3 12.4 265 61-356 130-411 (413)
16 2hy7_A Glucuronosyltransferase 100.0 7E-33 2.4E-37 253.3 10.1 247 63-355 124-380 (406)
17 3beo_A UDP-N-acetylglucosamine 100.0 1E-31 3.5E-36 244.0 17.6 278 52-351 84-373 (375)
18 1vgv_A UDP-N-acetylglucosamine 100.0 1.9E-32 6.5E-37 249.6 11.5 289 52-359 75-381 (384)
19 1uqt_A Alpha, alpha-trehalose- 100.0 1.9E-30 6.5E-35 239.8 21.4 275 63-354 123-454 (482)
20 3nb0_A Glycogen [starch] synth 100.0 3.2E-30 1.1E-34 239.0 21.9 293 61-359 179-638 (725)
21 1f0k_A MURG, UDP-N-acetylgluco 100.0 4.6E-30 1.6E-34 232.1 18.4 258 52-355 85-358 (364)
22 3t5t_A Putative glycosyltransf 100.0 3.4E-29 1.2E-33 228.4 22.4 286 52-350 138-470 (496)
23 2bfw_A GLGA glycogen synthase; 100.0 1.5E-28 5.1E-33 202.9 17.1 180 153-338 2-200 (200)
24 3qhp_A Type 1 capsular polysac 100.0 1.5E-28 5.1E-33 196.6 15.2 158 182-345 2-166 (166)
25 2vsy_A XCC0866; transferase, g 100.0 3.9E-28 1.3E-32 232.4 20.2 263 52-356 271-561 (568)
26 3rhz_A GTF3, nucleotide sugar 100.0 1.8E-27 6.1E-32 210.0 20.6 263 54-355 64-338 (339)
27 1v4v_A UDP-N-acetylglucosamine 99.9 7.2E-26 2.5E-30 205.5 20.9 277 52-355 80-365 (376)
28 2f9f_A First mannosyl transfer 99.9 1.7E-26 5.7E-31 186.5 13.7 147 179-329 20-173 (177)
29 2xci_A KDO-transferase, 3-deox 99.9 1.6E-25 5.4E-30 202.1 15.9 244 51-336 99-362 (374)
30 3ot5_A UDP-N-acetylglucosamine 99.9 1.4E-22 4.9E-27 184.2 16.3 275 49-347 100-385 (403)
31 3dzc_A UDP-N-acetylglucosamine 99.9 5.2E-23 1.8E-27 186.9 13.2 277 49-347 97-391 (396)
32 3s2u_A UDP-N-acetylglucosamine 99.8 2.3E-19 7.7E-24 161.3 24.0 255 52-347 81-352 (365)
33 3otg_A CALG1; calicheamicin, T 99.8 7.2E-20 2.5E-24 168.0 17.1 266 53-352 120-408 (412)
34 2iyf_A OLED, oleandomycin glyc 99.8 1.2E-18 4.1E-23 160.8 17.9 277 52-356 93-403 (430)
35 4hwg_A UDP-N-acetylglucosamine 99.8 6.3E-19 2.2E-23 158.7 10.9 276 50-346 81-370 (385)
36 4fzr_A SSFS6; structural genom 99.7 1.3E-17 4.3E-22 152.3 14.1 155 180-347 226-396 (398)
37 3ia7_A CALG4; glycosysltransfe 99.7 5.6E-16 1.9E-20 141.5 21.6 274 52-352 91-398 (402)
38 3tsa_A SPNG, NDP-rhamnosyltran 99.7 6.9E-17 2.4E-21 147.1 12.6 262 52-347 103-384 (391)
39 3rsc_A CALG2; TDP, enediyne, s 99.7 1.5E-15 5.3E-20 139.3 19.6 274 52-352 107-413 (415)
40 2p6p_A Glycosyl transferase; X 99.7 2.2E-15 7.4E-20 136.8 18.0 260 52-347 96-375 (384)
41 3oti_A CALG3; calicheamicin, T 99.6 1.4E-15 4.6E-20 138.8 13.3 261 50-347 117-393 (398)
42 2yjn_A ERYCIII, glycosyltransf 99.5 1.3E-13 4.4E-18 127.4 16.0 154 181-347 267-431 (441)
43 2iya_A OLEI, oleandomycin glyc 99.4 7.5E-12 2.6E-16 115.0 20.4 154 181-347 255-417 (424)
44 2o6l_A UDP-glucuronosyltransfe 99.4 7.8E-13 2.7E-17 105.3 10.5 132 180-325 20-160 (170)
45 3q3e_A HMW1C-like glycosyltran 99.4 1.1E-11 3.7E-16 115.3 17.6 271 52-359 338-628 (631)
46 1l5w_A Maltodextrin phosphoryl 99.3 3E-11 1E-15 114.6 14.2 286 63-355 299-731 (796)
47 2c4m_A Glycogen phosphorylase; 99.3 1.3E-11 4.3E-16 117.2 11.2 284 63-355 289-720 (796)
48 2gj4_A Glycogen phosphorylase, 99.2 2.7E-10 9.3E-15 108.6 17.0 193 118-313 431-710 (824)
49 1iir_A Glycosyltransferase GTF 99.2 9.3E-10 3.2E-14 100.6 19.6 136 181-332 238-381 (415)
50 3h4t_A Glycosyltransferase GTF 99.2 7.8E-10 2.7E-14 100.7 18.9 151 180-346 220-377 (404)
51 4amg_A Snogd; transferase, pol 99.2 1.6E-10 5.6E-15 105.1 11.9 153 180-347 236-396 (400)
52 1rrv_A Glycosyltransferase GTF 99.1 4.2E-09 1.4E-13 96.3 16.6 135 181-331 237-381 (416)
53 3hbm_A UDP-sugar hydrolase; PS 98.7 2.3E-07 7.8E-12 79.1 12.5 191 52-282 58-252 (282)
54 4gyw_A UDP-N-acetylglucosamine 98.7 1E-06 3.5E-11 85.7 18.3 177 179-359 520-710 (723)
55 2c1x_A UDP-glucose flavonoid 3 98.5 7.9E-06 2.7E-10 75.2 18.5 144 179-335 269-427 (456)
56 2acv_A Triterpene UDP-glucosyl 98.4 0.0001 3.4E-09 68.0 23.5 130 179-319 274-425 (463)
57 2vch_A Hydroquinone glucosyltr 98.2 0.0014 4.9E-08 60.6 25.9 144 180-333 267-442 (480)
58 3hbf_A Flavonoid 3-O-glucosylt 98.2 4.3E-05 1.5E-09 69.8 15.2 199 121-334 212-428 (454)
59 2pq6_A UDP-glucuronosyl/UDP-gl 98.1 7.7E-05 2.6E-09 69.3 14.9 144 181-336 295-455 (482)
60 3l7i_A Teichoic acid biosynthe 98.0 9.7E-05 3.3E-09 72.3 14.6 217 121-354 475-718 (729)
61 1psw_A ADP-heptose LPS heptosy 97.5 0.0018 6.1E-08 57.2 13.9 96 181-281 180-287 (348)
62 2jzc_A UDP-N-acetylglucosamine 97.5 0.0001 3.4E-09 60.2 4.5 46 232-283 115-161 (224)
63 3tov_A Glycosyl transferase fa 97.2 0.011 3.8E-07 52.1 15.4 104 181-289 185-295 (349)
64 2gt1_A Lipopolysaccharide hept 97.0 0.016 5.5E-07 50.5 14.5 134 181-319 178-322 (326)
65 1ygp_A Yeast glycogen phosphor 96.1 0.052 1.8E-06 52.4 11.7 123 180-303 598-761 (879)
66 3h5i_A Response regulator/sens 89.1 5 0.00017 29.1 11.8 107 209-318 5-123 (140)
67 3cg4_A Response regulator rece 88.4 5.4 0.00018 28.9 10.2 107 209-318 7-126 (142)
68 4fyk_A Deoxyribonucleoside 5'- 87.8 3 0.0001 31.3 8.0 72 245-318 63-141 (152)
69 3jte_A Response regulator rece 87.0 4.6 0.00016 29.3 9.0 107 210-319 4-123 (143)
70 3hzh_A Chemotaxis response reg 86.9 3.6 0.00012 30.7 8.5 74 242-318 71-156 (157)
71 3dfz_A SIRC, precorrin-2 dehyd 86.6 8.9 0.0003 30.9 10.8 76 209-289 54-130 (223)
72 2zay_A Response regulator rece 86.4 2.6 9E-05 30.9 7.4 107 209-318 8-127 (147)
73 3kcn_A Adenylate cyclase homol 86.0 6.8 0.00023 28.8 9.6 107 210-320 5-124 (151)
74 2pln_A HP1043, response regula 85.9 4.2 0.00014 29.3 8.2 72 242-319 52-133 (137)
75 1k68_A Phytochrome response re 85.8 6.3 0.00022 28.2 9.2 106 210-318 3-130 (140)
76 1dbw_A Transcriptional regulat 85.4 4.8 0.00016 28.5 8.2 107 209-318 3-120 (126)
77 1qkk_A DCTD, C4-dicarboxylate 85.0 4.4 0.00015 30.0 8.1 107 210-319 4-121 (155)
78 2nzw_A Alpha1,3-fucosyltransfe 85.0 6.3 0.00021 34.5 9.7 83 242-327 223-308 (371)
79 3grc_A Sensor protein, kinase; 84.8 8.9 0.00031 27.6 10.3 108 209-319 6-127 (140)
80 3gl9_A Response regulator; bet 84.6 6.3 0.00022 27.7 8.5 105 211-318 4-121 (122)
81 3nhm_A Response regulator; pro 84.1 9.2 0.00032 27.1 12.8 106 210-319 5-122 (133)
82 2qzj_A Two-component response 84.1 4.8 0.00017 29.1 7.8 107 209-318 4-120 (136)
83 1rcu_A Conserved hypothetical 83.5 0.98 3.3E-05 35.6 3.7 69 243-316 111-192 (195)
84 3t6k_A Response regulator rece 83.4 6.6 0.00023 28.3 8.3 107 210-319 5-124 (136)
85 2rjn_A Response regulator rece 83.3 7.4 0.00025 28.7 8.7 109 208-319 6-126 (154)
86 3gt7_A Sensor protein; structu 83.2 7.3 0.00025 28.8 8.6 107 209-318 7-126 (154)
87 3ilh_A Two component response 82.2 10 0.00035 27.3 9.1 109 210-321 10-141 (146)
88 1xv5_A AGT, DNA alpha-glucosyl 82.1 17 0.00057 28.6 26.2 262 53-334 67-382 (401)
89 3c3m_A Response regulator rece 81.3 13 0.00043 26.7 9.5 111 210-320 4-124 (138)
90 2qr3_A Two-component system re 81.3 8.7 0.0003 27.6 8.3 109 209-320 3-127 (140)
91 3n53_A Response regulator rece 80.4 14 0.00047 26.5 11.2 106 210-319 4-122 (140)
92 3hdv_A Response regulator; PSI 80.1 14 0.00047 26.4 9.0 109 209-320 7-128 (136)
93 2lpm_A Two-component response 80.0 9.1 0.00031 27.5 7.6 107 209-318 8-121 (123)
94 3h1g_A Chemotaxis protein CHEY 79.7 7.9 0.00027 27.5 7.4 108 209-319 5-127 (129)
95 3cnb_A DNA-binding response re 79.7 9.3 0.00032 27.5 8.0 108 209-319 8-130 (143)
96 3lte_A Response regulator; str 79.2 11 0.00037 26.7 8.1 108 209-319 6-125 (132)
97 3lua_A Response regulator rece 79.0 3 0.0001 30.3 5.0 108 210-320 5-128 (140)
98 3to5_A CHEY homolog; alpha(5)b 78.7 17 0.00056 26.5 9.1 111 208-318 11-132 (134)
99 1dcf_A ETR1 protein; beta-alph 78.5 5.4 0.00018 28.7 6.2 108 209-319 7-129 (136)
100 1i3c_A Response regulator RCP1 78.4 16 0.00056 26.6 9.1 106 209-317 8-135 (149)
101 1jbe_A Chemotaxis protein CHEY 78.3 12 0.00039 26.4 8.0 106 209-317 4-123 (128)
102 3crn_A Response regulator rece 78.1 15 0.00051 26.0 8.6 106 210-318 4-120 (132)
103 3heb_A Response regulator rece 78.0 8 0.00027 28.4 7.2 104 210-316 5-132 (152)
104 3kht_A Response regulator; PSI 77.8 8.6 0.0003 27.9 7.3 107 209-318 5-127 (144)
105 3i42_A Response regulator rece 77.7 14 0.00047 25.9 8.2 107 210-319 4-122 (127)
106 3f6p_A Transcriptional regulat 77.5 14 0.00047 25.7 8.1 105 211-318 4-118 (120)
107 1k66_A Phytochrome response re 77.0 12 0.00041 27.1 7.9 107 209-318 6-137 (149)
108 2gkg_A Response regulator homo 76.8 10 0.00036 26.4 7.3 106 210-319 6-125 (127)
109 2j48_A Two-component sensor ki 76.4 10 0.00035 25.9 7.2 105 211-318 3-117 (119)
110 3r0j_A Possible two component 76.2 23 0.00079 28.7 10.2 109 210-318 24-140 (250)
111 2rdm_A Response regulator rece 76.1 18 0.0006 25.5 11.1 109 209-319 5-123 (132)
112 4f3y_A DHPR, dihydrodipicolina 75.6 2.6 8.9E-05 35.3 4.1 96 183-284 8-107 (272)
113 1zgz_A Torcad operon transcrip 75.5 16 0.00055 25.3 8.0 104 211-317 4-117 (122)
114 1mb3_A Cell division response 75.5 14 0.00049 25.6 7.8 105 211-318 3-120 (124)
115 1srr_A SPO0F, sporulation resp 75.1 18 0.00062 25.1 8.7 107 210-319 4-121 (124)
116 3ehd_A Uncharacterized conserv 75.1 6.1 0.00021 30.0 5.6 67 246-317 65-161 (162)
117 3hdg_A Uncharacterized protein 74.4 19 0.00066 25.5 8.4 108 209-319 7-125 (137)
118 3cg0_A Response regulator rece 74.3 21 0.00071 25.4 9.6 107 209-318 9-127 (140)
119 3uuw_A Putative oxidoreductase 73.9 8.5 0.00029 32.7 7.1 91 182-280 6-96 (308)
120 3hv2_A Response regulator/HD d 73.3 24 0.00083 25.7 10.7 107 210-319 15-133 (153)
121 3rqi_A Response regulator prot 73.0 13 0.00043 28.5 7.4 108 209-319 7-125 (184)
122 3cfy_A Putative LUXO repressor 72.6 23 0.0008 25.2 9.7 105 211-318 6-121 (137)
123 1ys7_A Transcriptional regulat 72.6 34 0.0012 27.1 11.9 107 209-318 7-124 (233)
124 3eod_A Protein HNR; response r 72.6 21 0.00071 25.1 8.1 108 209-319 7-126 (130)
125 3ijp_A DHPR, dihydrodipicolina 72.5 3.7 0.00013 34.6 4.2 96 182-284 21-122 (288)
126 4dad_A Putative pilus assembly 71.4 6.1 0.00021 28.8 5.0 66 250-318 67-140 (146)
127 3m6m_D Sensory/regulatory prot 71.1 26 0.0009 25.2 10.5 109 208-319 13-136 (143)
128 2jba_A Phosphate regulon trans 70.8 9.2 0.00031 26.8 5.7 105 211-318 4-121 (127)
129 2r25_B Osmosensing histidine p 70.6 25 0.00087 24.9 8.9 106 210-318 3-126 (133)
130 2gwr_A DNA-binding response re 70.4 31 0.0011 27.6 9.5 106 210-318 6-121 (238)
131 1s8n_A Putative antiterminator 70.3 36 0.0012 26.4 10.3 108 210-320 14-132 (205)
132 1yio_A Response regulatory pro 69.6 37 0.0013 26.3 11.6 107 210-319 5-122 (208)
133 2qvg_A Two component response 69.3 25 0.00085 25.1 8.0 105 209-316 7-132 (143)
134 1mvo_A PHOP response regulator 69.2 27 0.00093 24.6 10.0 109 211-319 5-121 (136)
135 2qsj_A DNA-binding response re 69.2 11 0.00037 27.7 6.0 108 209-319 3-124 (154)
136 2czc_A Glyceraldehyde-3-phosph 69.0 11 0.00037 32.6 6.6 82 199-281 16-110 (334)
137 1xvl_A Mn transporter, MNTC pr 68.9 25 0.00086 30.1 8.8 93 242-336 86-185 (321)
138 1xhf_A DYE resistance, aerobic 68.9 26 0.00088 24.2 9.0 105 210-317 4-118 (123)
139 4e7p_A Response regulator; DNA 68.8 30 0.001 25.0 9.4 75 242-319 56-140 (150)
140 1kgs_A DRRD, DNA binding respo 68.4 37 0.0012 26.7 9.5 106 210-318 3-119 (225)
141 2qxy_A Response regulator; reg 68.4 14 0.00047 26.6 6.3 108 210-320 5-122 (142)
142 1qo0_D AMIR; binding protein, 68.1 12 0.00041 29.0 6.3 68 250-321 52-127 (196)
143 2pl1_A Transcriptional regulat 67.6 27 0.00092 24.0 8.7 104 211-317 2-116 (121)
144 3f6c_A Positive transcription 67.4 28 0.00095 24.5 7.8 107 210-319 2-120 (134)
145 3cz5_A Two-component response 67.2 33 0.0011 24.9 11.2 108 209-319 5-125 (153)
146 3euw_A MYO-inositol dehydrogen 67.1 27 0.00093 30.0 8.9 90 183-281 5-96 (344)
147 2a9o_A Response regulator; ess 66.8 28 0.00094 23.8 8.2 105 211-318 3-117 (120)
148 3kto_A Response regulator rece 66.0 8.9 0.00031 27.5 4.8 107 210-319 7-126 (136)
149 3dty_A Oxidoreductase, GFO/IDH 66.0 22 0.00076 31.4 8.3 95 181-279 11-114 (398)
150 2b4a_A BH3024; flavodoxin-like 65.6 33 0.0011 24.3 11.0 75 242-320 49-132 (138)
151 4hkt_A Inositol 2-dehydrogenas 64.7 25 0.00085 30.1 8.1 89 183-281 4-94 (331)
152 1tmy_A CHEY protein, TMY; chem 64.4 31 0.0011 23.6 8.3 104 211-317 4-119 (120)
153 3c97_A Signal transduction his 64.0 36 0.0012 24.2 12.4 107 210-319 11-130 (140)
154 2hqr_A Putative transcriptiona 63.6 18 0.00061 28.7 6.6 103 211-319 2-115 (223)
155 3v5n_A Oxidoreductase; structu 62.6 25 0.00086 31.3 8.0 97 181-281 36-141 (417)
156 1p9l_A Dihydrodipicolinate red 62.0 14 0.00049 30.2 5.7 75 211-285 2-80 (245)
157 2k6g_A Replication factor C su 61.6 35 0.0012 23.7 6.9 39 181-220 34-81 (109)
158 3rc1_A Sugar 3-ketoreductase; 61.5 21 0.00073 30.9 7.1 92 181-280 26-119 (350)
159 4had_A Probable oxidoreductase 61.0 22 0.00077 30.6 7.2 92 181-280 22-116 (350)
160 3mm4_A Histidine kinase homolo 61.0 40 0.0014 26.3 8.1 66 250-320 119-197 (206)
161 3cea_A MYO-inositol 2-dehydrog 60.9 56 0.0019 28.0 9.8 91 181-280 7-101 (346)
162 2qv0_A Protein MRKE; structura 60.1 43 0.0015 23.8 8.3 107 209-318 9-126 (143)
163 3e18_A Oxidoreductase; dehydro 60.1 35 0.0012 29.6 8.3 89 182-280 5-95 (359)
164 3e9m_A Oxidoreductase, GFO/IDH 59.4 40 0.0014 28.8 8.5 91 182-280 5-97 (330)
165 1p2f_A Response regulator; DRR 58.5 26 0.00089 27.6 6.7 104 211-318 4-116 (220)
166 1fy2_A Aspartyl dipeptidase; s 58.3 18 0.00061 29.2 5.6 41 242-283 71-122 (229)
167 1zh2_A KDP operon transcriptio 58.2 41 0.0014 22.9 7.5 104 211-317 3-116 (121)
168 1toa_A Tromp-1, protein (perip 57.9 60 0.0021 27.6 9.1 92 243-336 80-178 (313)
169 1h6d_A Precursor form of gluco 57.5 11 0.00038 33.9 4.7 95 180-280 81-180 (433)
170 3q9s_A DNA-binding response re 57.2 49 0.0017 26.8 8.3 106 210-318 38-153 (249)
171 3q2i_A Dehydrogenase; rossmann 57.2 48 0.0016 28.6 8.7 91 181-280 12-105 (354)
172 3a10_A Response regulator; pho 57.1 42 0.0014 22.7 10.0 104 211-317 3-115 (116)
173 3ujp_A Mn transporter subunit; 57.1 58 0.002 27.6 8.8 93 242-336 72-171 (307)
174 1zh8_A Oxidoreductase; TM0312, 56.3 25 0.00086 30.3 6.7 94 179-280 15-112 (340)
175 3m2t_A Probable dehydrogenase; 56.1 28 0.00095 30.3 6.9 91 182-280 5-98 (359)
176 2ayx_A Sensor kinase protein R 55.2 72 0.0025 25.8 9.1 74 242-318 163-246 (254)
177 1ydw_A AX110P-like protein; st 55.0 61 0.0021 28.0 9.0 91 182-281 6-102 (362)
178 2iz6_A Molybdenum cofactor car 54.7 7 0.00024 30.2 2.4 67 247-318 104-173 (176)
179 2ho3_A Oxidoreductase, GFO/IDH 54.2 37 0.0013 28.9 7.4 89 184-281 3-93 (325)
180 3n0r_A Response regulator; sig 53.9 95 0.0032 25.8 12.7 107 208-318 159-276 (286)
181 3ohs_X Trans-1,2-dihydrobenzen 53.9 25 0.00086 30.1 6.2 89 184-281 4-97 (334)
182 3e82_A Putative oxidoreductase 53.6 40 0.0014 29.3 7.6 90 181-280 6-97 (364)
183 3mz0_A Inositol 2-dehydrogenas 53.6 38 0.0013 29.1 7.4 88 184-280 4-96 (344)
184 3i23_A Oxidoreductase, GFO/IDH 53.0 52 0.0018 28.3 8.2 89 184-279 4-94 (349)
185 1p6q_A CHEY2; chemotaxis, sign 52.6 55 0.0019 22.6 8.5 106 210-318 7-126 (129)
186 1w25_A Stalked-cell differenti 52.0 91 0.0031 27.9 10.0 109 211-319 3-121 (459)
187 3snk_A Response regulator CHEY 51.8 9.3 0.00032 27.3 2.7 65 251-318 60-132 (135)
188 3db2_A Putative NADPH-dependen 51.7 33 0.0011 29.7 6.7 91 182-281 5-97 (354)
189 1dc7_A NTRC, nitrogen regulati 51.6 49 0.0017 22.6 6.7 104 211-317 5-119 (124)
190 2cok_A Poly [ADP-ribose] polym 51.5 8.9 0.00031 27.0 2.4 17 263-279 60-76 (113)
191 1tlt_A Putative oxidoreductase 50.3 25 0.00084 29.9 5.6 90 183-281 6-96 (319)
192 3cu5_A Two component transcrip 50.3 65 0.0022 22.9 11.8 105 211-318 4-122 (141)
193 4ew6_A D-galactose-1-dehydroge 50.1 46 0.0016 28.5 7.3 85 181-280 24-111 (330)
194 3b2n_A Uncharacterized protein 50.0 63 0.0022 22.6 8.3 106 211-319 5-123 (133)
195 3ec7_A Putative dehydrogenase; 49.9 31 0.001 30.0 6.2 92 181-281 22-118 (357)
196 2khz_A C-MYC-responsive protei 48.9 25 0.00085 26.7 4.7 35 245-280 72-109 (165)
197 3eul_A Possible nitrate/nitrit 48.5 73 0.0025 22.9 9.2 76 242-320 51-136 (152)
198 2f62_A Nucleoside 2-deoxyribos 48.4 85 0.0029 23.6 10.2 37 245-281 62-105 (161)
199 2ebu_A Replication factor C su 47.8 60 0.002 22.7 6.2 12 181-192 24-35 (112)
200 3moi_A Probable dehydrogenase; 47.2 36 0.0012 29.9 6.3 90 183-280 3-94 (387)
201 2o1e_A YCDH; alpha-beta protei 47.1 1.1E+02 0.0038 25.8 9.1 94 242-336 62-173 (312)
202 3gdo_A Uncharacterized oxidore 47.0 35 0.0012 29.6 6.1 89 182-280 5-95 (358)
203 2prs_A High-affinity zinc upta 46.9 47 0.0016 27.7 6.6 94 243-336 41-157 (284)
204 1dz3_A Stage 0 sporulation pro 46.8 69 0.0024 22.2 7.4 107 210-319 3-123 (130)
205 3hh8_A Metal ABC transporter s 46.7 50 0.0017 27.8 6.8 93 242-335 58-163 (294)
206 2oqr_A Sensory transduction pr 46.7 34 0.0012 27.1 5.6 107 210-319 5-121 (230)
207 3gi1_A LBP, laminin-binding pr 45.9 48 0.0017 27.7 6.5 93 242-336 52-162 (286)
208 3ezy_A Dehydrogenase; structur 45.2 44 0.0015 28.7 6.4 90 184-281 4-95 (344)
209 3u3x_A Oxidoreductase; structu 44.8 67 0.0023 27.8 7.6 92 181-281 25-119 (361)
210 3kux_A Putative oxidoreductase 44.6 53 0.0018 28.3 6.8 88 182-279 7-96 (352)
211 1xea_A Oxidoreductase, GFO/IDH 44.6 42 0.0014 28.5 6.1 90 184-280 4-93 (323)
212 3l4e_A Uncharacterized peptida 43.0 80 0.0027 24.9 7.0 43 240-283 69-122 (206)
213 1l7b_A DNA ligase; BRCT, autos 42.0 22 0.00074 23.9 3.1 14 265-278 56-69 (92)
214 1jg7_A BGT, DNA beta-glucosylt 41.7 1.3E+02 0.0045 23.9 16.4 142 182-336 181-333 (351)
215 3c1a_A Putative oxidoreductase 41.6 47 0.0016 28.1 5.9 89 181-280 9-99 (315)
216 3l3e_A DNA topoisomerase 2-bin 41.3 83 0.0028 21.5 6.4 65 208-280 17-82 (107)
217 1cf2_P Protein (glyceraldehyde 41.3 89 0.003 26.8 7.6 83 198-281 14-109 (337)
218 1f06_A MESO-diaminopimelate D- 41.0 26 0.00088 30.0 4.2 86 183-282 4-90 (320)
219 3evn_A Oxidoreductase, GFO/IDH 40.9 31 0.0011 29.5 4.7 91 183-281 6-98 (329)
220 3cx3_A Lipoprotein; zinc-bindi 40.6 78 0.0027 26.3 7.0 93 243-336 51-160 (284)
221 3luf_A Two-component system re 39.9 1.5E+02 0.0051 24.0 11.8 108 208-318 123-244 (259)
222 3fhl_A Putative oxidoreductase 38.6 83 0.0028 27.2 7.2 88 182-280 5-95 (362)
223 2ixa_A Alpha-N-acetylgalactosa 38.5 1.2E+02 0.004 27.2 8.3 95 181-280 19-121 (444)
224 4ekn_B Aspartate carbamoyltran 38.4 1.3E+02 0.0045 25.4 8.0 131 116-259 88-227 (306)
225 4gmf_A Yersiniabactin biosynth 37.5 60 0.0021 28.4 6.0 90 181-280 6-100 (372)
226 3lxy_A 4-hydroxythreonine-4-ph 37.2 22 0.00076 30.5 3.1 75 231-317 240-326 (334)
227 2glx_A 1,5-anhydro-D-fructose 37.1 1.2E+02 0.0041 25.6 8.0 74 201-280 17-92 (332)
228 3kb6_A D-lactate dehydrogenase 37.1 86 0.0029 26.9 6.8 41 243-283 187-232 (334)
229 1ny5_A Transcriptional regulat 36.3 1.5E+02 0.0051 25.9 8.5 107 211-320 2-119 (387)
230 2d8m_A DNA-repair protein XRCC 36.2 1.2E+02 0.0039 21.7 7.1 62 208-280 24-86 (129)
231 3ip3_A Oxidoreductase, putativ 35.8 63 0.0022 27.6 5.9 90 183-280 3-97 (337)
232 3eqz_A Response regulator; str 35.2 85 0.0029 21.7 5.8 108 210-320 4-126 (135)
233 1dih_A Dihydrodipicolinate red 35.2 11 0.00038 31.4 0.9 41 243-283 65-105 (273)
234 3klo_A Transcriptional regulat 35.0 85 0.0029 24.6 6.3 69 250-318 54-128 (225)
235 1eiw_A Hypothetical protein MT 34.9 48 0.0016 23.2 4.0 71 246-318 34-109 (111)
236 4aty_A Terephthalate 1,2-CIS-d 33.9 18 0.00062 31.4 2.0 76 230-318 255-340 (349)
237 3f4l_A Putative oxidoreductase 32.9 77 0.0026 27.2 6.0 88 184-280 4-95 (345)
238 2dc1_A L-aspartate dehydrogena 32.9 31 0.0011 27.8 3.3 41 242-282 41-82 (236)
239 4fb5_A Probable oxidoreductase 32.8 1.3E+02 0.0045 26.0 7.7 92 181-279 24-123 (393)
240 1s2d_A Purine trans deoxyribos 32.6 33 0.0011 26.1 3.1 36 246-281 77-116 (167)
241 1lc0_A Biliverdin reductase A; 31.6 91 0.0031 26.0 6.1 72 208-279 6-94 (294)
242 3o9z_A Lipopolysaccaride biosy 31.2 1.8E+02 0.0061 24.4 7.9 90 183-279 4-101 (312)
243 3ju3_A Probable 2-oxoacid ferr 31.1 66 0.0023 22.6 4.3 68 233-317 47-116 (118)
244 3lkv_A Uncharacterized conserv 30.5 2.3E+02 0.008 23.4 11.9 149 117-281 62-227 (302)
245 1t35_A Hypothetical protein YV 30.2 36 0.0012 26.5 3.0 42 242-285 89-138 (191)
246 3kyj_B CHEY6 protein, putative 29.7 1.2E+02 0.0042 21.4 5.9 70 242-314 49-130 (145)
247 2nu8_A Succinyl-COA ligase [AD 29.3 1E+02 0.0036 25.7 6.0 29 250-278 64-92 (288)
248 1r0k_A 1-deoxy-D-xylulose 5-ph 29.2 2.9E+02 0.01 24.2 8.9 84 195-282 40-125 (388)
249 3h05_A Uncharacterized protein 29.0 88 0.003 23.9 5.0 66 196-276 85-151 (177)
250 4g2n_A D-isomer specific 2-hyd 28.7 2.3E+02 0.008 24.3 8.2 92 206-315 170-279 (345)
251 3kip_A 3-dehydroquinase, type 27.7 1.4E+02 0.0049 22.4 5.6 64 251-318 84-157 (167)
252 1f8y_A Nucleoside 2-deoxyribos 27.6 43 0.0015 25.1 3.0 36 246-281 74-113 (157)
253 2z2v_A Hypothetical protein PH 27.5 1.6E+02 0.0054 25.6 7.0 93 182-281 16-108 (365)
254 2h1q_A Hypothetical protein; Z 27.4 1E+02 0.0036 25.4 5.5 74 240-315 176-253 (270)
255 3g5o_A Uncharacterized protein 27.1 1.3E+02 0.0046 20.6 5.3 69 266-346 22-93 (108)
256 1l0b_A BRCA1; TANDEM-BRCT, thr 26.8 1.1E+02 0.0036 24.3 5.5 19 263-281 57-75 (229)
257 2vt3_A REX, redox-sensing tran 26.1 85 0.0029 24.9 4.6 43 242-284 137-179 (215)
258 3av3_A Phosphoribosylglycinami 25.9 2E+02 0.0067 22.7 6.7 71 243-316 98-175 (212)
259 3h75_A Periplasmic sugar-bindi 25.9 2.3E+02 0.0079 23.9 7.9 197 53-272 51-274 (350)
260 2nvw_A Galactose/lactose metab 25.5 99 0.0034 28.1 5.5 94 181-280 38-144 (479)
261 2jk1_A HUPR, hydrogenase trans 25.4 1.7E+02 0.0059 20.3 9.9 107 211-318 3-118 (139)
262 3ic5_A Putative saccharopine d 25.3 1.6E+02 0.0054 19.8 7.9 89 184-278 7-97 (118)
263 3sqd_A PAX-interacting protein 25.3 57 0.002 26.0 3.5 62 209-281 16-78 (219)
264 3mfq_A TROA, high-affinity zin 25.2 2.9E+02 0.0099 22.8 8.5 90 243-336 48-144 (282)
265 3u80_A 3-dehydroquinate dehydr 25.1 2.1E+02 0.0072 21.2 6.1 64 249-316 69-145 (151)
266 3bio_A Oxidoreductase, GFO/IDH 25.0 28 0.00096 29.4 1.7 86 182-280 9-95 (304)
267 3oa2_A WBPB; oxidoreductase, s 24.9 2.9E+02 0.0099 23.2 8.1 91 183-280 4-103 (318)
268 1pq4_A Periplasmic binding pro 24.7 3E+02 0.01 22.8 9.2 38 299-336 134-173 (291)
269 1q0q_A 1-deoxy-D-xylulose 5-ph 24.2 3.7E+02 0.013 23.7 9.5 93 181-281 34-132 (406)
270 3abi_A Putative uncharacterize 23.9 1.8E+02 0.0062 25.1 6.8 91 182-280 16-107 (365)
271 3l5o_A Uncharacterized protein 23.7 1.8E+02 0.0062 24.0 6.2 109 182-315 141-253 (270)
272 4gqa_A NAD binding oxidoreduct 23.3 1.7E+02 0.0057 25.8 6.5 97 180-279 24-125 (412)
273 1yxo_A 4-hydroxythreonine-4-ph 23.0 2.5E+02 0.0087 23.9 7.1 75 230-316 234-320 (328)
274 4h3v_A Oxidoreductase domain p 22.7 99 0.0034 26.8 4.9 95 181-279 5-104 (390)
275 3btv_A Galactose/lactose metab 22.7 85 0.0029 28.1 4.5 90 182-280 20-125 (438)
276 1a04_A Nitrate/nitrite respons 22.4 2.6E+02 0.009 21.3 10.6 106 210-318 6-124 (215)
277 4b4t_W RPN10, 26S proteasome r 21.8 55 0.0019 27.1 2.8 24 300-323 219-242 (268)
278 3oqb_A Oxidoreductase; structu 21.4 86 0.003 27.3 4.2 39 242-280 73-113 (383)
279 2pi1_A D-lactate dehydrogenase 21.2 1.8E+02 0.0062 24.8 6.1 74 211-286 2-76 (334)
280 1t15_A Breast cancer type 1 su 20.7 1.3E+02 0.0046 23.3 4.9 65 209-281 4-72 (214)
281 3csu_A Protein (aspartate carb 20.7 1E+02 0.0035 26.1 4.3 132 116-259 90-230 (310)
282 3onk_A Epsin-3, ENT3; helix, p 20.3 76 0.0026 23.5 3.0 33 305-337 115-147 (150)
283 3dzd_A Transcriptional regulat 20.0 2.4E+02 0.0082 24.4 6.7 107 212-318 3-117 (368)
No 1
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=100.00 E-value=2.4e-40 Score=302.91 Aligned_cols=295 Identities=22% Similarity=0.377 Sum_probs=241.4
Q ss_pred ccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHh--CCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCC
Q 016648 49 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLL--CVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 126 (385)
Q Consensus 49 ~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~--~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 126 (385)
.....++.+.+++.+||+||+|++....+.+.+.++.. ++|+|+++|+........ .......++.+++.+|
T Consensus 85 ~~~~~~l~~~l~~~~~Dvv~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~------~~~~~~~~~~~~~~ad 158 (394)
T 2jjm_A 85 LALASKMAEVAQRENLDILHVHYAIPHAICAYLAKQMIGERIKIVTTLHGTDITVLGS------DPSLNNLIRFGIEQSD 158 (394)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECSSTTHHHHHHHHHHHTTTCSEEEEECCHHHHHTTTT------CTTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEcchhHHHHHHHHHHHhhcCCCCEEEEEecCcccccCC------CHHHHHHHHHHHhhCC
Confidence 34456788899999999999997654444444444444 599999999953211111 1123346778899999
Q ss_pred eEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHh
Q 016648 127 LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 206 (385)
Q Consensus 127 ~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 206 (385)
.++++|+.+++.+.+.++. ..++.++|||+|.+.+.+.. ....+.+... +++.++++++|++.+.||++.++++++.
T Consensus 159 ~ii~~s~~~~~~~~~~~~~-~~~~~vi~ngv~~~~~~~~~-~~~~~~~~~~-~~~~~~i~~~G~~~~~Kg~~~li~a~~~ 235 (394)
T 2jjm_A 159 VVTAVSHSLINETHELVKP-NKDIQTVYNFIDERVYFKRD-MTQLKKEYGI-SESEKILIHISNFRKVKRVQDVVQAFAK 235 (394)
T ss_dssp EEEESCHHHHHHHHHHTCC-SSCEEECCCCCCTTTCCCCC-CHHHHHHTTC-C---CEEEEECCCCGGGTHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHhhCC-cccEEEecCCccHHhcCCcc-hHHHHHHcCC-CCCCeEEEEeeccccccCHHHHHHHHHH
Confidence 9999999999999988763 57999999999998876542 2233333321 3567899999999999999999999987
Q ss_pred C---CCceEEEEeCCccHHHHHHHHcCC----CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 207 L---PEARIAFIGDGPYREELEKMFTGM----PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 207 ~---~~~~l~i~G~g~~~~~l~~~~~~~----~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
+ ++++++++|+|+..+.+++++.+. +|.+.|+. +++..+|+.||++|+||..|++|++++|||+||+|||+
T Consensus 236 l~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~g~~--~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~ 313 (394)
T 2jjm_A 236 IVTEVDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQ--DNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIG 313 (394)
T ss_dssp HHHSSCCEEEEECCCTTHHHHHHHHHTTTCGGGBCCCBSC--SCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEE
T ss_pred HHhhCCCEEEEECCchHHHHHHHHHHHcCCCCeEEEeCch--hhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEE
Confidence 6 468999999999888888887754 68999974 89999999999999999999999999999999999999
Q ss_pred ecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHH
Q 016648 280 VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFW 358 (385)
Q Consensus 280 s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~~~~~~ 358 (385)
++.++..|++ .++.+|++++++|+++++++|.++++|++.++++++++++.+ ++|+|+.+++++. .+|+++++..
T Consensus 314 ~~~~~~~e~v---~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~ 389 (394)
T 2jjm_A 314 TRVGGIPEVI---QHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQFRSEKIVSQYE-TIYYDVLRDD 389 (394)
T ss_dssp ECCTTSTTTC---CBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHTC---
T ss_pred ecCCChHHHh---hcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhh
Confidence 9999999999 888999999999999999999999999999999999999998 7799999999997 7999998643
No 2
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=100.00 E-value=3.5e-40 Score=301.76 Aligned_cols=295 Identities=22% Similarity=0.329 Sum_probs=246.3
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCC-EEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeE
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP-IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 128 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p-~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 128 (385)
.....+.+.+++.+||+||+|++....+... +++..++| +|++.|+..... ......+...+.+++.+|.+
T Consensus 73 ~~~~~l~~~~~~~~~Dvv~~~~~~~~~~~~~-~~~~~~~~~~i~~~h~~~~~~-------~~~~~~~~~~~~~~~~~d~i 144 (394)
T 3okp_A 73 TTAHAMAEIIREREIDNVWFGAAAPLALMAG-TAKQAGASKVIASTHGHEVGW-------SMLPGSRQSLRKIGTEVDVL 144 (394)
T ss_dssp HHHHHHHHHHHHTTCSEEEESSCTTGGGGHH-HHHHTTCSEEEEECCSTHHHH-------TTSHHHHHHHHHHHHHCSEE
T ss_pred hhHHHHHHHHHhcCCCEEEECCcchHHHHHH-HHHhcCCCcEEEEeccchhhh-------hhcchhhHHHHHHHHhCCEE
Confidence 4567899999999999999998755444333 35667887 788999753211 12233455778889999999
Q ss_pred EEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCCh--hhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHh
Q 016648 129 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS--EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDR 206 (385)
Q Consensus 129 i~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~ 206 (385)
+++|+..++.+.+.++ +..++.++|||+|.+.+.+..... ..+.+.. .+++.++++|+|++.+.||++.++++++.
T Consensus 145 i~~s~~~~~~~~~~~~-~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~G~~~~~Kg~~~li~a~~~ 222 (394)
T 3okp_A 145 TYISQYTLRRFKSAFG-SHPTFEHLPSGVDVKRFTPATPEDKSATRKKLG-FTDTTPVIACNSRLVPRKGQDSLIKAMPQ 222 (394)
T ss_dssp EESCHHHHHHHHHHHC-SSSEEEECCCCBCTTTSCCCCHHHHHHHHHHTT-CCTTCCEEEEESCSCGGGCHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHhcC-CCCCeEEecCCcCHHHcCCCCchhhHHHHHhcC-CCcCceEEEEEeccccccCHHHHHHHHHH
Confidence 9999999999999876 457999999999999887633222 2222222 24456899999999999999999999987
Q ss_pred C----CCceEEEEeCCccHHHHHHHHcC--CCeEEecccChHHHHHHHHhCcEEEEcCCC-------CCCcHHHHHHHhc
Q 016648 207 L----PEARIAFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSES-------ETLGLVVLEAMSS 273 (385)
Q Consensus 207 ~----~~~~l~i~G~g~~~~~l~~~~~~--~~i~~~g~~~~~~~~~~~~~adi~v~ps~~-------e~~~~~~~Ea~a~ 273 (385)
+ ++++++|+|+|++.+.+++++.. .+|+++|+++++++.++|+.||++|+||.. |++|++++|||++
T Consensus 223 l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~ 302 (394)
T 3okp_A 223 VIAARPDAQLLIVGSGRYESTLRRLATDVSQNVKFLGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQAC 302 (394)
T ss_dssp HHHHSTTCEEEEECCCTTHHHHHHHTGGGGGGEEEEESCCHHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHT
T ss_pred HHhhCCCeEEEEEcCchHHHHHHHHHhcccCeEEEcCCCCHHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHc
Confidence 6 78999999999999888887743 379999999999999999999999999998 9999999999999
Q ss_pred CCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHH
Q 016648 274 GIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-KYDWRAATRTIRNEQYN 352 (385)
Q Consensus 274 G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~-~~s~~~~~~~~~~~iy~ 352 (385)
|+|||+++.++..+++ .++ +|++++++|+++++++|.++++|++.++++++++++.++ +|+|+.+++++. ++|+
T Consensus 303 G~PvI~~~~~~~~e~i---~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~ 377 (394)
T 3okp_A 303 GVPVIAGTSGGAPETV---TPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAEWSWEIMGERLT-NILQ 377 (394)
T ss_dssp TCCEEECSSTTGGGGC---CTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH-HHHH
T ss_pred CCCEEEeCCCChHHHH---hcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHH
Confidence 9999999999999999 788 999999999999999999999999999999999999985 599999999997 7999
Q ss_pred HHHHHHH
Q 016648 353 AAIWFWR 359 (385)
Q Consensus 353 ~~~~~~~ 359 (385)
++.....
T Consensus 378 ~~~r~~~ 384 (394)
T 3okp_A 378 SEPRKLA 384 (394)
T ss_dssp SCCC---
T ss_pred HhccCcc
Confidence 8875443
No 3
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=100.00 E-value=2.2e-39 Score=300.62 Aligned_cols=296 Identities=24% Similarity=0.315 Sum_probs=235.8
Q ss_pred HHHH-hhcc-CCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccc--cccchhHHHHHHHHHHhCCeEEE
Q 016648 55 IISE-VARF-KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF--SWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 55 l~~~-i~~~-~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
+.+. +++. +||+||+|.+. ..+.+..+++..++|+|+++|+..+........ ..........++.+++.+|.+++
T Consensus 112 ~~~~~~~~~~~~Div~~~~~~-~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~ 190 (438)
T 3c48_A 112 MLSFTRREKVTYDLIHSHYWL-SGQVGWLLRDLWRIPLIHTAHTLAAVKNSYRDDSDTPESEARRICEQQLVDNADVLAV 190 (438)
T ss_dssp HHHHHHHHTCCCSEEEEEHHH-HHHHHHHHHHHHTCCEEEECSSCHHHHSCC----CCHHHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHhccCCCCEEEeCCcc-HHHHHHHHHHHcCCCEEEEecCCcccccccccccCCcchHHHHHHHHHHHhcCCEEEE
Confidence 3344 4444 49999999753 333445567778999999999964321111000 00011223456788999999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCCh--hhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC-
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS--EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL- 207 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~- 207 (385)
+|+..++.+.+.++.+..++.++|||+|.+.+.+..... ..+.+... .+++++++++|++.+.||++.++++++.+
T Consensus 191 ~s~~~~~~~~~~~g~~~~k~~vi~ngvd~~~~~~~~~~~~~~~r~~~~~-~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~ 269 (438)
T 3c48_A 191 NTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGNDRATERSRRELGI-PLHTKVVAFVGRLQPFKGPQVLIKAVAALF 269 (438)
T ss_dssp SSHHHHHHHHHHHCCCGGGEEECCCCCCTTTSCCC----CHHHHHHTTC-CSSSEEEEEESCBSGGGCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhCCChhheEEecCCccccccCCcccchhhhhHHhcCC-CCCCcEEEEEeeecccCCHHHHHHHHHHHH
Confidence 999999999886666678999999999998876643221 13333322 35678999999999999999999999876
Q ss_pred ---C--CceEEEEeC----CccHHHHHHHHcC----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcC
Q 016648 208 ---P--EARIAFIGD----GPYREELEKMFTG----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG 274 (385)
Q Consensus 208 ---~--~~~l~i~G~----g~~~~~l~~~~~~----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G 274 (385)
| +++++|+|. |+..+.+++++.+ .+|.+.|+++++++..+|+.||++|+||..|++|++++|||+||
T Consensus 270 ~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G 349 (438)
T 3c48_A 270 DRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASG 349 (438)
T ss_dssp HHCTTCSEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTT
T ss_pred hhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHhCCEEEECccccCCchHHHHHHHcC
Confidence 3 789999998 7777777777653 47999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 016648 275 IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 275 ~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~ 354 (385)
+|||+++.++..+++ .++.+|++++++|+++++++|.++++|++.++++++++++.+++|+|+.+++++. ++|+++
T Consensus 350 ~PvI~~~~~~~~e~i---~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~ 425 (438)
T 3c48_A 350 TPVIAARVGGLPIAV---AEGETGLLVDGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLS-SLYNDA 425 (438)
T ss_dssp CCEEEESCTTHHHHS---CBTTTEEEESSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred CCEEecCCCChhHHh---hCCCcEEECCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHH
Confidence 999999999999999 8889999999999999999999999999999999999999986699999999997 799999
Q ss_pred HH
Q 016648 355 IW 356 (385)
Q Consensus 355 ~~ 356 (385)
++
T Consensus 426 ~~ 427 (438)
T 3c48_A 426 IA 427 (438)
T ss_dssp HH
T ss_pred hh
Confidence 85
No 4
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=100.00 E-value=7.7e-40 Score=303.71 Aligned_cols=288 Identities=23% Similarity=0.295 Sum_probs=236.1
Q ss_pred ccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccc--ccc----chhHHHHHHHHHHhCCeEEEcChh
Q 016648 61 RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF--SWL----VKPMWLVIKFLHRAADLTLVPSVA 134 (385)
Q Consensus 61 ~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~ad~ii~~s~~ 134 (385)
+.+||+||+|++.. .+.+..+++..++|+|+++|+......+.... ... .......++..++.+|.++++|+.
T Consensus 120 ~~~~Dii~~~~~~~-~~~~~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~S~~ 198 (439)
T 3fro_A 120 EPLPDVVHFHDWHT-VFAGALIKKYFKIPAVFTIHRLNKSKLPAFYFHEAGLSELAPYPDIDPEHTGGYIADIVTTVSRG 198 (439)
T ss_dssp SCCCSEEEEESGGG-HHHHHHHHHHHCCCEEEEESCCCCCCEEHHHHHHTTCGGGCCSSEECHHHHHHHHCSEEEESCHH
T ss_pred CCCCeEEEecchhh-hhhHHHHhhccCCCEEEEecccccccCchHHhCccccccccccceeeHhhhhhhhccEEEecCHH
Confidence 45999999998643 34445566788999999999987543322111 000 001113778889999999999999
Q ss_pred HHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCC-------ChhhHhhhcCCCCCCcEEEEEeecc-ccccHHHHHHHHHh
Q 016648 135 IGKDLEAARVTAANKIRIWKKGVDSESFHPRFR-------SSEMRWRLSNGEPDKPLIVHVGRLG-VEKSLDFLKRVMDR 206 (385)
Q Consensus 135 ~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~-------~~~~~~~~~~~~~~~~~i~~~G~~~-~~k~~~~l~~a~~~ 206 (385)
.++.....+..+..++.++|||+|.+.+.+... ....+.+... +++ ++++|+|++. +.||++.++++++.
T Consensus 199 ~~~~~~~~~~~~~~~i~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~i~~~G~~~~~~Kg~~~li~a~~~ 276 (439)
T 3fro_A 199 YLIDEWGFFRNFEGKITYVFNGIDCSFWNESYLTGSRDERKKSLLSKFGM-DEG-VTFMFIGRFDRGQKGVDVLLKAIEI 276 (439)
T ss_dssp HHHHTHHHHGGGTTSEEECCCCCCTTTSCGGGSCSCHHHHHHHHHHHHTC-CSC-EEEEEECCSSCTTBCHHHHHHHHHH
T ss_pred HHHHHhhhhhhcCCceeecCCCCCchhcCcccccchhhhhHHHHHHHcCC-CCC-cEEEEEcccccccccHHHHHHHHHH
Confidence 999866655557889999999999998876521 1222333332 334 8999999999 99999999999988
Q ss_pred C------CCceEEEEeCCccH--HHHHHHHcCC--CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCc
Q 016648 207 L------PEARIAFIGDGPYR--EELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 276 (385)
Q Consensus 207 ~------~~~~l~i~G~g~~~--~~l~~~~~~~--~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 276 (385)
+ ++++++|+|+|+.. +.+++++.+. .+.+.|+++.+++..+|+.||++|+||..|++|++++|||+||+|
T Consensus 277 l~~~~~~~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~P 356 (439)
T 3fro_A 277 LSSKKEFQEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAI 356 (439)
T ss_dssp HHTSGGGGGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCE
T ss_pred HHhcccCCCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCC
Confidence 7 68999999999866 7777776543 467899999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc-CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 016648 277 VVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 277 vI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~ 355 (385)
||+|+.++..|++ .++ +|++++++|+++++++|.++++ |++.++++++++++.+++|||+.+++++. ++|++++
T Consensus 357 vi~s~~~~~~e~~---~~~-~g~~~~~~d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~ 431 (439)
T 3fro_A 357 PIASAVGGLRDII---TNE-TGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFSWEKSAERYV-KAYTGSI 431 (439)
T ss_dssp EEEESSTHHHHHC---CTT-TCEEECTTCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHTSCHHHHHHHHH-HHHHTCS
T ss_pred eEEcCCCCcceeE---EcC-ceEEeCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCcHHHHHHHHH-HHHHHHH
Confidence 9999999999999 666 9999999999999999999999 99999999999999998899999999997 7999886
Q ss_pred H
Q 016648 356 W 356 (385)
Q Consensus 356 ~ 356 (385)
+
T Consensus 432 ~ 432 (439)
T 3fro_A 432 D 432 (439)
T ss_dssp C
T ss_pred H
Confidence 3
No 5
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=100.00 E-value=1.5e-39 Score=306.66 Aligned_cols=303 Identities=18% Similarity=0.243 Sum_probs=241.3
Q ss_pred HHHHHHhhc--cCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccc-----cccch-----hHHHHHHH
Q 016648 53 PRIISEVAR--FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTF-----SWLVK-----PMWLVIKF 120 (385)
Q Consensus 53 ~~l~~~i~~--~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~-----~~~~~-----~~~~~~~~ 120 (385)
..+.+.+++ .+||+||+|++. ..+.+..+++..++|+|++.|+..+........ ..... .....++.
T Consensus 108 ~~l~~~l~~~~~~~Divh~~~~~-~~~~~~~~~~~~~~p~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (499)
T 2r60_A 108 NKIINFYREEGKFPQVVTTHYGD-GGLAGVLLKNIKGLPFTFTGHSLGAQKMEKLNVNTSNFKEMDERFKFHRRIIAERL 186 (499)
T ss_dssp HHHHHHHHHHTCCCSEEEEEHHH-HHHHHHHHHHHHCCCEEEECSSCHHHHHHTTCCCSTTSHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEcCCc-chHHHHHHHHhcCCcEEEEccCcccccchhhccCCCCcchhhhhHHHHHHHHHHHH
Confidence 467778877 589999999853 344455567788999999999964322111000 00000 12235678
Q ss_pred HHHhCCeEEEcChhHHHHHHHh--cc-c----CCCcEEEeeCCCCCCCCCCCCCC---hhhHhhhcC----CCCCCcEEE
Q 016648 121 LHRAADLTLVPSVAIGKDLEAA--RV-T----AANKIRIWKKGVDSESFHPRFRS---SEMRWRLSN----GEPDKPLIV 186 (385)
Q Consensus 121 ~~~~ad~ii~~s~~~~~~~~~~--~~-~----~~~~i~vi~~~v~~~~~~~~~~~---~~~~~~~~~----~~~~~~~i~ 186 (385)
+++.+|.++++|+..++.+.+. ++ . +..++.++|||+|.+.+.+.... ...+.++.. ..++.++|+
T Consensus 187 ~~~~ad~vi~~S~~~~~~~~~~~~~g~~~~~~~~~ki~vi~ngvd~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~i~ 266 (499)
T 2r60_A 187 TMSYADKIIVSTSQERFGQYSHDLYRGAVNVEDDDKFSVIPPGVNTRVFDGEYGDKIKAKITKYLERDLGSERMELPAII 266 (499)
T ss_dssp HHHHCSEEEESSHHHHHHTTTSGGGTTTCCTTCGGGEEECCCCBCTTTSSSCCCHHHHHHHHHHHHHHSCGGGTTSCEEE
T ss_pred HHhcCCEEEECCHHHHHHHHhhhcccccccccCCCCeEEECCCcChhhcCccchhhhHHHHHHHhcccccccCCCCcEEE
Confidence 8999999999999999998876 54 4 56799999999999888665321 223333220 134678999
Q ss_pred EEeeccccccHHHHHHHHHhCC-----CceEEEEeC--Cc------c-------HHHHHHHHcC----CCeEEecccChH
Q 016648 187 HVGRLGVEKSLDFLKRVMDRLP-----EARIAFIGD--GP------Y-------REELEKMFTG----MPAVFTGMLLGE 242 (385)
Q Consensus 187 ~~G~~~~~k~~~~l~~a~~~~~-----~~~l~i~G~--g~------~-------~~~l~~~~~~----~~i~~~g~~~~~ 242 (385)
++|++.+.||++.+++|++.+. ..+++|+|+ |+ . .+.+++++.+ .+|+++|+++++
T Consensus 267 ~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~ 346 (499)
T 2r60_A 267 ASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQ 346 (499)
T ss_dssp ECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHH
T ss_pred EeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHH
Confidence 9999999999999999999883 258999997 33 1 5667776653 369999999999
Q ss_pred HHHHHHHhC----cEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 243 ELSQAYASG----DVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 243 ~~~~~~~~a----di~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
++..+|+.| |++|+||..|++|++++|||+||+|||+|+.++..|++ .++.+|++++++|+++++++|.++++
T Consensus 347 ~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~s~~~g~~e~v---~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 347 ELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVVTRNGGPAEIL---DGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEEESSBHHHHHT---GGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEEecCCCHHHHh---cCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 999999999 99999999999999999999999999999999999999 78889999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHH
Q 016648 319 NQELRETMGQAARQEMEK-YDWRAATRTIRNEQYNAAIWFWRK 360 (385)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~-~s~~~~~~~~~~~iy~~~~~~~~~ 360 (385)
|++.++++++++++.+++ |||+.+++++. .+|+++++..+.
T Consensus 424 ~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~y~~~~~~~~~ 465 (499)
T 2r60_A 424 SEETWSAYQEKGKQRVEERYTWQETARGYL-EVIQEIADRKDE 465 (499)
T ss_dssp CHHHHHHHHHHHHHHHHHHSBHHHHHHHHH-HHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhhhh
Confidence 999999999999999865 99999999997 799999875543
No 6
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=100.00 E-value=3.3e-39 Score=296.49 Aligned_cols=283 Identities=22% Similarity=0.304 Sum_probs=237.3
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
...+.+.+++.+||+||++++....+ ...+++..++|+|+++|+..+... . ........+.+++.+|.++++
T Consensus 96 ~~~l~~~l~~~~~Dii~~~~~~~~~~-~~~~~~~~~~~~i~~~h~~~~~~~---~----~~~~~~~~~~~~~~~d~ii~~ 167 (406)
T 2gek_A 96 HRKVKKWIAEGDFDVLHIHEPNAPSL-SMLALQAAEGPIVATFHTSTTKSL---T----LSVFQGILRPYHEKIIGRIAV 167 (406)
T ss_dssp HHHHHHHHHHHCCSEEEEECCCSSSH-HHHHHHHEESSEEEEECCCCCSHH---H----HHHHHSTTHHHHTTCSEEEES
T ss_pred HHHHHHHHHhcCCCEEEECCccchHH-HHHHHHhcCCCEEEEEcCcchhhh---h----HHHHHHHHHHHHhhCCEEEEC
Confidence 46788899999999999998755444 445566779999999999654321 0 111111223778999999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeec-cccccHHHHHHHHHhC---
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRL--- 207 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~-~~~k~~~~l~~a~~~~--- 207 (385)
|+..++.+.+.++ ..++ ++|||+|.+.+.+..... ...+++++++|+|++ .+.||++.++++++.+
T Consensus 168 s~~~~~~~~~~~~--~~~~-vi~~~v~~~~~~~~~~~~-------~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~ 237 (406)
T 2gek_A 168 SDLARRWQMEALG--SDAV-EIPNGVDVASFADAPLLD-------GYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVAR 237 (406)
T ss_dssp SHHHHHHHHHHHS--SCEE-ECCCCBCHHHHHTCCCCT-------TCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcC--CCcE-EecCCCChhhcCCCchhh-------hccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHH
Confidence 9999999987653 4578 999999877654432211 012256799999999 9999999999999887
Q ss_pred -CCceEEEEeCCccHHHHHHHHcC--CCeEEecccChHHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEecCC
Q 016648 208 -PEARIAFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 208 -~~~~l~i~G~g~~~~~l~~~~~~--~~i~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
++++++++|.++. +.+++++.+ .+|.+.|+++++++.++|+.||++|+||. .|++|++++|||+||+|||+++.+
T Consensus 238 ~~~~~l~i~G~~~~-~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI~~~~~ 316 (406)
T 2gek_A 238 FPDVEILIVGRGDE-DELREQAGDLAGHLRFLGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLD 316 (406)
T ss_dssp STTCEEEEESCSCH-HHHHHHTGGGGGGEEECCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCCH
T ss_pred CCCeEEEEEcCCcH-HHHHHHHHhccCcEEEEecCCHHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEEEecCC
Confidence 6899999999987 778777664 47999999999999999999999999996 999999999999999999999999
Q ss_pred CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Q 016648 284 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWF 357 (385)
Q Consensus 284 ~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~~ 357 (385)
+..+++ .++.+|++++++|+++++++|.++++|++.++++++++++.+++|+|+.+++++. ++|+++++.
T Consensus 317 ~~~e~i---~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~ 386 (406)
T 2gek_A 317 AFRRVL---ADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVHRYDWSVVSAQIM-RVYETVSGA 386 (406)
T ss_dssp HHHHHH---TTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGGGGBHHHHHHHHH-HHHHHHCCT
T ss_pred cHHHHh---cCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhh
Confidence 999999 8889999999999999999999999999999999999999988999999999997 799998754
No 7
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=100.00 E-value=3.1e-38 Score=296.65 Aligned_cols=299 Identities=18% Similarity=0.217 Sum_probs=230.8
Q ss_pred HHHHHHhhc----cCCCEEEeCCCchhHHHHHHHH-HHhCCCEEEEEecCCCccc-ccc-------ccccc------chh
Q 016648 53 PRIISEVAR----FKPDIIHASSPGIMVFGALIIA-KLLCVPIVMSYHTHVPVYI-PRY-------TFSWL------VKP 113 (385)
Q Consensus 53 ~~l~~~i~~----~~pDiI~~~~~~~~~~~~~~~~-~~~~~p~v~~~h~~~~~~~-~~~-------~~~~~------~~~ 113 (385)
..+.++++. .+|||||+|++....+ +..++ +..++|+|+++|+...... ... ..... ...
T Consensus 115 ~~~~~~~~~~~~~~~~Divh~~~~~~~~~-~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (485)
T 2qzs_A 115 WVGAEMASGLDPFWRPDVVHAHDWHAGLA-PAYLAARGRPAKSVFTVHNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNG 193 (485)
T ss_dssp HHHHHHTTTSSTTCCCSEEEEETGGGTTH-HHHHHHTTCSSEEEEEESCTTCCCEEEGGGGGTTTCCGGGCSTTTTEETT
T ss_pred HHHHHHHHHhccCCCCCEEEeeccchhHH-HHHHhhccCCCCEEEEecCccccCCCCHHHHHhcCCCchhcccccccccc
Confidence 455666663 7999999998643333 33344 5679999999999753211 100 00000 000
Q ss_pred HHHHHHHHHHhCCeEEEcChhHHHHHHHh-ccc--------CC--CcEEEeeCCCCCCCCCCCCCC--------------
Q 016648 114 MWLVIKFLHRAADLTLVPSVAIGKDLEAA-RVT--------AA--NKIRIWKKGVDSESFHPRFRS-------------- 168 (385)
Q Consensus 114 ~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-~~~--------~~--~~i~vi~~~v~~~~~~~~~~~-------------- 168 (385)
...+++..++.+|.++++|+.+++.+.+. ++. +. .++.+||||+|.+.+.+....
T Consensus 194 ~~~~~~~~~~~ad~vi~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (485)
T 2qzs_A 194 QISFLKAGLYYADHITAVSPTYAREITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDK 273 (485)
T ss_dssp EEEHHHHHHHHCSEEEESSHHHHHHTTSHHHHTTCHHHHHHHHHTTCEEECCCCCCTTTSCTTTCTTSSSCCCTTCGGGG
T ss_pred cccHHHHHHHhcCeEEecCHHHHHHHhccccCcchHHHHHhhccCCceEEEecCCCccccCccccccccccccccchhHH
Confidence 11366788899999999999999998764 221 12 689999999999888765321
Q ss_pred ----hhhHhhhcCCC-CCCcEEEEEeeccccccHHHHHHHHHhC--CCceEEEEeCCc--cHHHHHHHHcC--CCeE-Ee
Q 016648 169 ----SEMRWRLSNGE-PDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTG--MPAV-FT 236 (385)
Q Consensus 169 ----~~~~~~~~~~~-~~~~~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G~g~--~~~~l~~~~~~--~~i~-~~ 236 (385)
...+.+..... ++.++++++|++.+.||++.+++|++.+ ++++++|+|+|+ +.+.+++++.+ .+|. +.
T Consensus 274 ~~~~~~~r~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~ 353 (485)
T 2qzs_A 274 AENKRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQI 353 (485)
T ss_dssp HHHHHHHHHHHTCCCCTTSCEEEEEEEESGGGCHHHHHHHHHHHHHTTCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEE
T ss_pred HHhHHHHHHHcCCCCCCCCeEEEEeccCccccCHHHHHHHHHHHhhCCcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeC
Confidence 22333333322 2678999999999999999999999887 689999999885 46677776654 4686 78
Q ss_pred cccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCC---------CeeEeeCCCCHH
Q 016648 237 GMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG---------KIGYLFNPGDLD 307 (385)
Q Consensus 237 g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~---------~~g~~~~~~~~~ 307 (385)
|+ +.+++..+|+.||++|+||..|++|++++|||+||+|||+|+.++..|++ .++ .+|++++++|++
T Consensus 354 g~-~~~~~~~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~s~~gg~~e~v---~~~~~~~~~~~~~~G~l~~~~d~~ 429 (485)
T 2qzs_A 354 GY-HEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLVRRTGGLADTV---SDCSLENLADGVASGFVFEDSNAW 429 (485)
T ss_dssp SC-CHHHHHHHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHC---CBCCHHHHHTTCCCBEEECSSSHH
T ss_pred CC-CHHHHHHHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEECCCCCcccee---ccCccccccccccceEEECCCCHH
Confidence 88 77888999999999999999999999999999999999999999999999 777 899999999999
Q ss_pred HHHHHHhHhh---cCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Q 016648 308 DCLSKLEPLL---YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWR 359 (385)
Q Consensus 308 ~l~~~i~~ll---~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~~~~ 359 (385)
+++++|.+++ +|++.++++++++++ ++|||+.+++++. ++|++++....
T Consensus 430 ~la~~i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~~~~~~~-~ly~~~~~~~~ 481 (485)
T 2qzs_A 430 SLLRAIRRAFVLWSRPSLWRFVQRQAMA--MDFSWQVAAKSYR-ELYYRLKLEHH 481 (485)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHHH--CCCCHHHHHHHHH-HHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--hcCCHHHHHHHHH-HHHHHhhhhhc
Confidence 9999999999 799999999998874 6799999999997 79999876543
No 8
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=100.00 E-value=1.7e-38 Score=298.39 Aligned_cols=292 Identities=18% Similarity=0.223 Sum_probs=227.8
Q ss_pred hccCCCEEEeCCCchhHHHHHHHHHH--hCCCEEEEEecCCCccc-ccccc-------ccc------chhHHHHHHHHHH
Q 016648 60 ARFKPDIIHASSPGIMVFGALIIAKL--LCVPIVMSYHTHVPVYI-PRYTF-------SWL------VKPMWLVIKFLHR 123 (385)
Q Consensus 60 ~~~~pDiI~~~~~~~~~~~~~~~~~~--~~~p~v~~~h~~~~~~~-~~~~~-------~~~------~~~~~~~~~~~~~ 123 (385)
++.+|||||+|++.. .+.+..+++. .++|+|+++|+...... ..... ... ......+++.+++
T Consensus 127 ~~~~~DiIh~~~~~~-~~~~~~~~~~~~~~~p~v~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (485)
T 1rzu_A 127 PGWRPDMVHAHDWQA-AMTPVYMRYAETPEIPSLLTIHNIAFQGQFGANIFSKLALPAHAFGMEGIEYYNDVSFLKGGLQ 205 (485)
T ss_dssp SSCCCSEEEEEHHHH-TTHHHHHHHSSSCCCCEEEEESCTTCCCEECGGGGGGSCCCGGGSSTTTTEETTEEEHHHHHHH
T ss_pred cCCCCCEEEecccch-hHHHHHHhhcccCCCCEEEEecCccccCCCCHHHHhhcCCChhhcccccccccccccHHHHHHh
Confidence 477999999998533 2223334443 79999999999753211 10000 000 0000126678889
Q ss_pred hCCeEEEcChhHHHHHHHh-cc--------cCCCcEEEeeCCCCCCCCCCCCCC------------------hhhHhhhc
Q 016648 124 AADLTLVPSVAIGKDLEAA-RV--------TAANKIRIWKKGVDSESFHPRFRS------------------SEMRWRLS 176 (385)
Q Consensus 124 ~ad~ii~~s~~~~~~~~~~-~~--------~~~~~i~vi~~~v~~~~~~~~~~~------------------~~~~~~~~ 176 (385)
.+|.++++|+..++.+.+. ++ .+..++.+||||+|.+.+.+.... ...+.+..
T Consensus 206 ~ad~vi~~S~~~~~~~~~~~~g~~~~~~~~~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 285 (485)
T 1rzu_A 206 TATALSTVSPSYAEEILTAEFGMGLEGVIGSRAHVLHGIVNGIDADVWNPATDHLIHDNYSAANLKNRALNKKAVAEHFR 285 (485)
T ss_dssp HCSEEEESCHHHHHHTTSHHHHTTCHHHHHTTGGGEEECCCCBCTTTSCTTTCTTSSSCCBTTBCTTHHHHHHHHHHHHT
T ss_pred hcCEEEecCHhHHHHHhccccCcchHHHHHhhcCCceEEcCCCcccccCCcccccccccccccchhhHHHhHHHHHHhcC
Confidence 9999999999999998764 22 246799999999999888765431 23333443
Q ss_pred CCCCCCcEEEEEeeccccccHHHHHHHHHhC--CCceEEEEeCCc--cHHHHHHHHcC--CCeE-EecccChHHHHHHHH
Q 016648 177 NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGP--YREELEKMFTG--MPAV-FTGMLLGEELSQAYA 249 (385)
Q Consensus 177 ~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G~g~--~~~~l~~~~~~--~~i~-~~g~~~~~~~~~~~~ 249 (385)
...++.++++++|++.+.||++.+++|++.+ ++++++|+|+|+ +.+.+++++.+ .+|+ +.|+ +.+++..+|+
T Consensus 286 ~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~-~~~~~~~~~~ 364 (485)
T 1rzu_A 286 IDDDGSPLFCVISRLTWQKGIDLMAEAVDEIVSLGGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGY-NEPLSHLMQA 364 (485)
T ss_dssp CCCSSSCEEEEESCBSTTTTHHHHHTTHHHHHHTTCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESC-CHHHHHHHHH
T ss_pred CCCCCCeEEEEEccCccccCHHHHHHHHHHHHhcCceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCC-CHHHHHHHHh
Confidence 3332367999999999999999999999887 689999999886 46677776654 4687 7888 7778899999
Q ss_pred hCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCC---------CeeEeeCCCCHHHHHHHHhHhh---
Q 016648 250 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG---------KIGYLFNPGDLDDCLSKLEPLL--- 317 (385)
Q Consensus 250 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~---------~~g~~~~~~~~~~l~~~i~~ll--- 317 (385)
.||++|+||..|++|++++|||+||+|||+|+.++..|++ .++ .+|++++++|+++++++|.+++
T Consensus 365 ~adv~v~pS~~E~~~~~~lEAma~G~PvI~s~~gg~~e~v---~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~~~ 441 (485)
T 1rzu_A 365 GCDAIIIPSRFEPCGLTQLYALRYGCIPVVARTGGLADTV---IDANHAALASKAATGVQFSPVTLDGLKQAIRRTVRYY 441 (485)
T ss_dssp HCSEEEECCSCCSSCSHHHHHHHHTCEEEEESSHHHHHHC---CBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHHHH
T ss_pred cCCEEEECcccCCCCHHHHHHHHCCCCEEEeCCCChhhee---cccccccccccCCcceEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 777 8999999999999999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Q 016648 318 YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWR 359 (385)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~~~~ 359 (385)
+|++.++++++++++ ++|||+.+++++. .+|+++++...
T Consensus 442 ~~~~~~~~~~~~~~~--~~fs~~~~~~~~~-~~y~~~~~~~~ 480 (485)
T 1rzu_A 442 HDPKLWTQMQKLGMK--SDVSWEKSAGLYA-ALYSQLISKGH 480 (485)
T ss_dssp TCHHHHHHHHHHHHT--CCCBHHHHHHHHH-HHHHHHTC---
T ss_pred CCHHHHHHHHHHHHH--HhCChHHHHHHHH-HHHHHhhCCCC
Confidence 799999999998874 6799999999997 79999876443
No 9
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=100.00 E-value=5.7e-38 Score=288.89 Aligned_cols=281 Identities=17% Similarity=0.212 Sum_probs=224.8
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCC----EEEEEecCCCcccccccccccchhHHHHHHHHHHhCC
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVP----IVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD 126 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p----~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad 126 (385)
....+.+.+++.+||+||+|.+. ...+..+++..++| ++...|...+.... ..+.+++++|
T Consensus 69 ~~~~l~~~l~~~~~Div~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~ 133 (413)
T 3oy2_A 69 YYSGLSEFIDVHKPDIVMIYNDP--IVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRE-------------NLWWIFSHPK 133 (413)
T ss_dssp CHHHHHHHHHHHCCSEEEEEECH--HHHHHHHHHGGGCCSCCEEEEEECCCSBSCCG-------------GGGGGGGCTT
T ss_pred hHHHHHHHHHhcCCCEEEEcchH--HHHHHHHHHhccCCCCCceeeeccccchhhHH-------------HHHHHHhccC
Confidence 35567888999999999999643 22344445555555 34444443222110 1245778888
Q ss_pred --eEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCC--CCcEEEEEeeccccccHHHHHH
Q 016648 127 --LTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP--DKPLIVHVGRLGVEKSLDFLKR 202 (385)
Q Consensus 127 --~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~G~~~~~k~~~~l~~ 202 (385)
.++++|+..++.+.+.+. ..++.++|||+|.+.+. ..+.+... ++ +.++++++|++.+.||++.+++
T Consensus 134 ~~~ii~~S~~~~~~~~~~~~--~~~~~vi~ngvd~~~~~------~~~~~~~~-~~~~~~~~il~vGr~~~~Kg~~~li~ 204 (413)
T 3oy2_A 134 VVGVMAMSKCWISDICNYGC--KVPINIVSHFVDTKTIY------DARKLVGL-SEYNDDVLFLNMNRNTARKRLDIYVL 204 (413)
T ss_dssp EEEEEESSTHHHHHHHHTTC--CSCEEECCCCCCCCCCT------THHHHTTC-GGGTTSEEEECCSCSSGGGTHHHHHH
T ss_pred CceEEEcCHHHHHHHHHcCC--CCceEEeCCCCCHHHHH------HHHHhcCC-CcccCceEEEEcCCCchhcCcHHHHH
Confidence 999999999999999543 57999999999998771 12222221 22 6789999999999999999999
Q ss_pred HHHhC----CCceEEEEeCCccH------HHHHHHHcCC----C-------eEEecccChHHHHHHHHhCcEEEEcCCCC
Q 016648 203 VMDRL----PEARIAFIGDGPYR------EELEKMFTGM----P-------AVFTGMLLGEELSQAYASGDVFVMPSESE 261 (385)
Q Consensus 203 a~~~~----~~~~l~i~G~g~~~------~~l~~~~~~~----~-------i~~~g~~~~~~~~~~~~~adi~v~ps~~e 261 (385)
|++.+ ++++++|+|+|+.. +.+++++.+. + +.+.|+++++++..+|+.||++|+||..|
T Consensus 205 a~~~l~~~~~~~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~adv~v~pS~~E 284 (413)
T 3oy2_A 205 AAARFISKYPDAKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNACDVIVNCSSGE 284 (413)
T ss_dssp HHHHHHHHCTTCCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHHCSEEEECCSCC
T ss_pred HHHHHHHhCCCcEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHhCCEEEeCCCcC
Confidence 99876 89999999988654 6666655432 2 78889999999999999999999999999
Q ss_pred CCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCe---------------eE--eeCCCCHHHHHHHHhHhhcCHHHHH
Q 016648 262 TLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKI---------------GY--LFNPGDLDDCLSKLEPLLYNQELRE 324 (385)
Q Consensus 262 ~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~---------------g~--~~~~~~~~~l~~~i~~ll~~~~~~~ 324 (385)
++|++++|||+||+|||+|+.++..|++ .++.+ |+ +++++|+++++++| ++++|++.++
T Consensus 285 ~~~~~~lEAma~G~PvI~s~~~g~~e~v---~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~ 360 (413)
T 3oy2_A 285 GFGLCSAEGAVLGKPLIISAVGGADDYF---SGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRK 360 (413)
T ss_dssp SSCHHHHHHHTTTCCEEEECCHHHHHHS---CTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHH
T ss_pred CCCcHHHHHHHcCCCEEEcCCCChHHHH---ccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHH
Confidence 9999999999999999999999999999 77776 88 99999999999999 9999999999
Q ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHH
Q 016648 325 TMGQAARQEM-EKYDWRAATRTIRNEQYNAAIWFWRK 360 (385)
Q Consensus 325 ~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~~~~~~~~ 360 (385)
++++++++.+ ++|||+.+++++. ++|+++++...+
T Consensus 361 ~~~~~a~~~~~~~fs~~~~~~~~~-~~~~~~~~~~~~ 396 (413)
T 3oy2_A 361 EYGKRVQDFVKTKPTWDDISSDII-DFFNSLLRVESR 396 (413)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHH-HHHHHHTC----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhcCC
Confidence 9999999998 5799999999997 799999875543
No 10
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=100.00 E-value=2.8e-37 Score=299.11 Aligned_cols=290 Identities=20% Similarity=0.242 Sum_probs=225.6
Q ss_pred cCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCccccccccc--ccc---hh--HHHHHHHHHHhCCeEEEcChh
Q 016648 62 FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFS--WLV---KP--MWLVIKFLHRAADLTLVPSVA 134 (385)
Q Consensus 62 ~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~--~~~---~~--~~~~~~~~~~~ad~ii~~s~~ 134 (385)
.+|||||+|.+ ..++.+.++++..|+|+|++.|+............ ... .. ....++.+++.||.|+++|+.
T Consensus 406 ~~PDVIHsH~~-~sglva~llar~~gvP~V~T~Hsl~~~k~~~~~~~~~~~~~~y~~~~r~~aE~~~l~~AD~VIa~S~~ 484 (816)
T 3s28_A 406 GKPDLIIGNYS-DGNLVASLLAHKLGVTQCTIAHALEKTKYPDSDIYWKKLDDKYHFSCQFTADIFAMNHTDFIITSTFQ 484 (816)
T ss_dssp SCCSEEEEEHH-HHHHHHHHHHHHHTCCEEEECSCCHHHHSTTTTTTHHHHHHHHCHHHHHHHHHHHHHHSSEEEESCHH
T ss_pred CCCeEEEeCCc-hHHHHHHHHHHHcCCCEEEEEecccccccccccchhhhHHHHHHHHHHHHHHHHHHHhCCEEEECCHH
Confidence 37999999975 34455677788899999999998643221111100 000 01 112356689999999999999
Q ss_pred HHHHHHHh---cc------------------cCCCcEEEeeCCCCCCCCCCCCCChh------------------hHhhh
Q 016648 135 IGKDLEAA---RV------------------TAANKIRIWKKGVDSESFHPRFRSSE------------------MRWRL 175 (385)
Q Consensus 135 ~~~~~~~~---~~------------------~~~~~i~vi~~~v~~~~~~~~~~~~~------------------~~~~~ 175 (385)
.++.+.+. +. ....++.+||||+|.+.|.+...... .+...
T Consensus 485 ~~~~l~~~~~~y~~~~~~~~p~Lyr~~~gI~~~~~ki~VIpnGVD~~~F~P~~~~~~Rl~~~~~~i~~~l~~p~~~r~~l 564 (816)
T 3s28_A 485 EIAGSKETVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTEEKRRLTKFHSEIEELLYSDVENKEHL 564 (816)
T ss_dssp HHHCCSSSCCTTGGGSSEEETTTEEEEESCCTTCTTEEECCCCCCTTTSCCTTCTTTCCGGGHHHHHHHHHCSCCBTTEE
T ss_pred HHHHHHHHHHHhhhhhccccchhhhcccccccCCCCEEEECCCcCHHHcCccchhhhhhhhccccccccccchhhHHHHh
Confidence 88852211 10 11239999999999998877543221 00011
Q ss_pred c-CCCCCCcEEEEEeeccccccHHHHHHHHHhC----CCceEEEEeCCc-----------cHHHHHHHHcC----CCeEE
Q 016648 176 S-NGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL----PEARIAFIGDGP-----------YREELEKMFTG----MPAVF 235 (385)
Q Consensus 176 ~-~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~----~~~~l~i~G~g~-----------~~~~l~~~~~~----~~i~~ 235 (385)
. ...+++++|+|+|++.+.||++.+++|+..+ ++++++|+|+|+ ..+.+++++.+ .+|.|
T Consensus 565 g~l~~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~f 644 (816)
T 3s28_A 565 CVLKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRW 644 (816)
T ss_dssp SCBSCTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEE
T ss_pred cccCCCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEE
Confidence 1 1245788999999999999999999999988 469999999988 45566666554 36999
Q ss_pred eccc----ChHHHHHHHH-hCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHH
Q 016648 236 TGML----LGEELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCL 310 (385)
Q Consensus 236 ~g~~----~~~~~~~~~~-~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~ 310 (385)
+|++ +.+++..+|+ .+|++|+||..|++|++++|||+||+|||+|+.++..+++ .++.+|++++++|+++++
T Consensus 645 lG~~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIasd~GG~~EiV---~dg~~Gllv~p~D~e~LA 721 (816)
T 3s28_A 645 ISSQMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEII---VHGKSGFHIDPYHGDQAA 721 (816)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEEESSBTHHHHC---CBTTTBEEECTTSHHHHH
T ss_pred ccCccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEEeCCCChHHHH---ccCCcEEEeCCCCHHHHH
Confidence 9954 4588999998 5799999999999999999999999999999999999999 889999999999999999
Q ss_pred HHHhHhh----cCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHH
Q 016648 311 SKLEPLL----YNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 311 ~~i~~ll----~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~~~~ 356 (385)
++|.+++ +|++.++++++++++.+ ++|||+.+++++. .+|+..-.
T Consensus 722 ~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~fSwe~~a~~ll-~lY~~~g~ 771 (816)
T 3s28_A 722 DTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLL-TLTGVYGF 771 (816)
T ss_dssp HHHHHHHHHHHHCTHHHHHHHHHHHHHHHHSCCHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHhH
Confidence 9997776 89999999999999998 6799999999998 69987643
No 11
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=100.00 E-value=4.2e-37 Score=275.92 Aligned_cols=250 Identities=18% Similarity=0.165 Sum_probs=215.3
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
...+.+.+++.+||+||+|++..... .++..++| |+++|+..+... .+|.++++
T Consensus 73 ~~~l~~~l~~~~~Dvi~~~~~~~~~~----~~~~~~~p-v~~~h~~~~~~~---------------------~~d~ii~~ 126 (342)
T 2iuy_A 73 PEEIERWLRTADVDVVHDHSGGVIGP----AGLPPGTA-FISSHHFTTRPV---------------------NPVGCTYS 126 (342)
T ss_dssp HHHHHHHHHHCCCSEEEECSSSSSCS----TTCCTTCE-EEEEECSSSBCS---------------------CCTTEEES
T ss_pred HHHHHHHHHhcCCCEEEECCchhhHH----HHhhcCCC-EEEecCCCCCcc---------------------cceEEEEc
Confidence 34888999999999999998643322 14567899 999999764321 19999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCCCce
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEAR 211 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~ 211 (385)
|+..++.+.+ ..++.++|||+|.+.+.+... ..+++.+++|+|++.+.||++.++++++.+ +++
T Consensus 127 S~~~~~~~~~-----~~~~~vi~ngvd~~~~~~~~~----------~~~~~~~i~~vG~~~~~Kg~~~li~a~~~~-~~~ 190 (342)
T 2iuy_A 127 SRAQRAHCGG-----GDDAPVIPIPVDPARYRSAAD----------QVAKEDFLLFMGRVSPHKGALEAAAFAHAC-GRR 190 (342)
T ss_dssp CHHHHHHTTC-----CTTSCBCCCCBCGGGSCCSTT----------CCCCCSCEEEESCCCGGGTHHHHHHHHHHH-TCC
T ss_pred CHHHHHHHhc-----CCceEEEcCCCChhhcCcccc----------cCCCCCEEEEEeccccccCHHHHHHHHHhc-CcE
Confidence 9999998865 468999999999887765432 123566899999999999999999999987 899
Q ss_pred EEEEeCCccHHHHHHHHcC--CCeEEecccChHHHHHHHHhCcEEEEcCC----------CCCCcHHHHHHHhcCCcEEE
Q 016648 212 IAFIGDGPYREELEKMFTG--MPAVFTGMLLGEELSQAYASGDVFVMPSE----------SETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 212 l~i~G~g~~~~~l~~~~~~--~~i~~~g~~~~~~~~~~~~~adi~v~ps~----------~e~~~~~~~Ea~a~G~PvI~ 279 (385)
++++|+|+..+.++++..+ .+|+++|+++++++.++|+.||++|+||. .|++|++++|||+||+|||+
T Consensus 191 l~i~G~g~~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~ 270 (342)
T 2iuy_A 191 LVLAGPAWEPEYFDEITRRYGSTVEPIGEVGGERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVG 270 (342)
T ss_dssp EEEESCCCCHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEE
T ss_pred EEEEeCcccHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEE
Confidence 9999999888877776653 68999999999999999999999999999 89999999999999999999
Q ss_pred ecCCCCCcccccCCC--CCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHH
Q 016648 280 VRAGGIPDIIPEDQD--GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 280 s~~~~~~e~~~~~~~--~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~iy~~~~~ 356 (385)
++.++..|++ .+ +.+|+++++ |+++++++|.++++ ++++++.+ ++|+|+.+++++. ++|+++++
T Consensus 271 s~~~~~~e~~---~~~~~~~g~~~~~-d~~~l~~~i~~l~~--------~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~ 337 (342)
T 2iuy_A 271 TGNGCLAEIV---PSVGEVVGYGTDF-APDEARRTLAGLPA--------SDEVRRAAVRLWGHVTIAERYV-EQYRRLLA 337 (342)
T ss_dssp CCTTTHHHHG---GGGEEECCSSSCC-CHHHHHHHHHTSCC--------HHHHHHHHHHHHBHHHHHHHHH-HHHHHHHT
T ss_pred cCCCChHHHh---cccCCCceEEcCC-CHHHHHHHHHHHHH--------HHHHHHHHHHhcCHHHHHHHHH-HHHHHHHc
Confidence 9999999999 78 889999999 99999999999987 56777877 6799999999997 79999874
No 12
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=100.00 E-value=3.2e-36 Score=282.98 Aligned_cols=287 Identities=18% Similarity=0.221 Sum_probs=213.8
Q ss_pred CCCEEEeCCCchhHHHHHHHHHH------hCCCEEEEEecCCCccc------ccccccc--------c-------chhHH
Q 016648 63 KPDIIHASSPGIMVFGALIIAKL------LCVPIVMSYHTHVPVYI------PRYTFSW--------L-------VKPMW 115 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~~~~~~~------~~~p~v~~~h~~~~~~~------~~~~~~~--------~-------~~~~~ 115 (385)
.+||+|+|++.....+.++.... .++|+|+|+|+...... ....... . .....
T Consensus 153 ~ddIiH~hDW~t~l~~~~l~~~~~~~~~~~~~~~V~TiHnl~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (536)
T 3vue_A 153 EDVVFVCNDWHTGPLASYLKNNYQPNGIYRNAKVAFCIHNISYQGRFAFEDYPELNLSERFRSSFDFIDGYDTPVEGRKI 232 (536)
T ss_dssp SCEEEEEESGGGSTHHHHHHHHTTTTTSSTTCEEEEEESCTTCCCEEEGGGGGGGCCCGGGHHHHEEEETTTSTTCEEEE
T ss_pred CCEEEEECcchHHHHHHHHHHhhhhhhhhcccceeeeecCcccccccchhhhhhcCCchhhcchhhhhhcccccccccch
Confidence 46788899986544443332221 37899999998543211 0000000 0 00001
Q ss_pred HHHHHHHHhCCeEEEcChhHHHHHHHhcc--------cCCCcEEEeeCCCCCCCCCCCCCCh------------------
Q 016648 116 LVIKFLHRAADLTLVPSVAIGKDLEAARV--------TAANKIRIWKKGVDSESFHPRFRSS------------------ 169 (385)
Q Consensus 116 ~~~~~~~~~ad~ii~~s~~~~~~~~~~~~--------~~~~~i~vi~~~v~~~~~~~~~~~~------------------ 169 (385)
.+++..+..||.|+++|+..++.+.+.++ ....++.+|+||+|.+.|.|..+..
T Consensus 233 n~~k~~i~~ad~v~tVS~~~a~ei~~~~~~g~~l~~~~~~~~i~~I~NGiD~~~~~p~~d~~~~~~~~~~~~~~~K~~~k 312 (536)
T 3vue_A 233 NWMKAGILEADRVLTVSPYYAEELISGIARGCELDNIMRLTGITGIVNGMDVSEWDPSKDKYITAKYDATTAIEAKALNK 312 (536)
T ss_dssp EHHHHHHHHCSEEEESCHHHHHHHHTTCCCCSSSCCCSCCCSCEECCCCCCTTTSCTTTCSSSSCCCCTTTHHHHHHHHH
T ss_pred hHHHHHHHhccEEEEcCHHHhhhhhcccccccccccccccCCeEEEECCcchhhcCCCCccccccccchhhhhhhhHHHH
Confidence 25677889999999999999999876542 2356899999999999988753210
Q ss_pred -hhHhhhcC-CCCCCcEEEEEeeccccccHHHHHHHHHhC--CCceEEEEeCCccH--HHHHHHHc--CCCeEEecccCh
Q 016648 170 -EMRWRLSN-GEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIGDGPYR--EELEKMFT--GMPAVFTGMLLG 241 (385)
Q Consensus 170 -~~~~~~~~-~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G~g~~~--~~l~~~~~--~~~i~~~g~~~~ 241 (385)
....+... ..++.++|+++||+.+.||++.+++|+.++ ++.+++++|.|+.. ..++.... ..++.+.+..+.
T Consensus 313 ~~l~~~~gl~~d~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~~~~l~l~G~G~~~~~~~~~~~~~~~~~~v~~~~~~~~ 392 (536)
T 3vue_A 313 EALQAEAGLPVDRKIPLIAFIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRAVVKFNA 392 (536)
T ss_dssp HHHHHHTTSCCCTTSCEEEEECCBSGGGCHHHHHHHHHHHTTSSCEEEEECCBCHHHHHHHHHHHHHSTTTEEEECSCCH
T ss_pred HHHHHhcCCCCCCCCcEEEEEeeccccCChHHHHHHHHHhHhhCCeEEEEeccCchHHHHHHHHHhhcCCceEEEEeccH
Confidence 01111222 235678999999999999999999999887 57899999977632 33333332 347999999999
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeE----------eeCCCCHHHHHH
Q 016648 242 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY----------LFNPGDLDDCLS 311 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~----------~~~~~~~~~l~~ 311 (385)
+++..+|+.||++|+||..|++|++++|||+||+|||+|+.|+.+|++ .++.+|+ ++++.|++++++
T Consensus 393 ~~~~~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~s~~gG~~e~V---~dg~~G~~~~~~~~~g~l~~~~d~~~la~ 469 (536)
T 3vue_A 393 PLAHLIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCACASTGGLVDTV---IEGKTGFHMGRLSVDCKVVEPSDVKKVAA 469 (536)
T ss_dssp HHHHHHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEECSCTHHHHHC---CBTTTEEECCCCCSCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhhheeecccccCCCCHHHHHHHHcCCCEEEcCCCCchhee---eCCCCccccccCCCceeEECCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999 8899998 677778999999
Q ss_pred HHhHhhc--CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 016648 312 KLEPLLY--NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 312 ~i~~ll~--~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~ 355 (385)
+|.++++ +.+.++++.+++.+ ++|||++.+++|. ++|+++.
T Consensus 470 ai~ral~~~~~~~~~~~~~~am~--~~fSW~~~A~~y~-~ly~~L~ 512 (536)
T 3vue_A 470 TLKRAIKVVGTPAYEEMVRNCMN--QDLSWKGPAKNWE-NVLLGLG 512 (536)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHH--SCCSSHHHHHHHH-HHHHTTC
T ss_pred HHHHHHHhcCcHHHHHHHHHHHH--hcCCHHHHHHHHH-HHHHHhh
Confidence 9998775 44456666665532 4699999999997 7999974
No 13
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=100.00 E-value=4.9e-36 Score=276.22 Aligned_cols=278 Identities=20% Similarity=0.242 Sum_probs=214.8
Q ss_pred HHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE-Ec
Q 016648 53 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL-VP 131 (385)
Q Consensus 53 ~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii-~~ 131 (385)
..+.+.+++.+||+||+|++....+..+ + + .++|+|++.|+..+.. ....+...+.++.++|.++ ++
T Consensus 116 ~~~~~~l~~~~~Dvv~~~~~~~~~~~~~-~-~-~~~p~v~~~h~~~~~~---------~~~~~~~~~~~~~~~~~~i~~~ 183 (416)
T 2x6q_A 116 RENSKFIDLSSFDYVLVHDPQPAALIEF-Y-E-KKSPWLWRCHIDLSSP---------NREFWEFLRRFVEKYDRYIFHL 183 (416)
T ss_dssp HHHHHSSCGGGSSEEEEESSTTGGGGGG-S-C-CCSCEEEECCSCCSSC---------CHHHHHHHHHHHTTSSEEEESS
T ss_pred HHHHHHHhhcCCCEEEEeccchhhHHHH-H-H-hcCCEEEEEccccCCc---------cHHHHHHHHHHHHhCCEEEEec
Confidence 3456667788999999998754433222 1 1 2389999999865431 1122234455667788877 55
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCCh----hhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS----EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL 207 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~ 207 (385)
|+...+. .+..++.++|||+|...+.+..... ..+.+.. .+++.++++++|++.+.||++.++++++.+
T Consensus 184 s~~~~~~------~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l 256 (416)
T 2x6q_A 184 PEYVQPE------LDRNKAVIMPPSIDPLSEKNVELKQTEILRILERFD-VDPEKPIITQVSRFDPWKGIFDVIEIYRKV 256 (416)
T ss_dssp GGGSCTT------SCTTTEEECCCCBCTTSTTTSCCCHHHHHHHHHHTT-CCTTSCEEEEECCCCTTSCHHHHHHHHHHH
T ss_pred hHHHHhh------CCccceEEeCCCCChhhhcccccChhhHHHHHHHhC-CCCCCcEEEEEeccccccCHHHHHHHHHHH
Confidence 5544431 2346899999999987665432221 2222222 245678999999999999999999999876
Q ss_pred ----CCceEEEEeCCcc-----HHHHHHHHc----CCCeEEecccC---hHHHHHHHHhCcEEEEcCCCCCCcHHHHHHH
Q 016648 208 ----PEARIAFIGDGPY-----REELEKMFT----GMPAVFTGMLL---GEELSQAYASGDVFVMPSESETLGLVVLEAM 271 (385)
Q Consensus 208 ----~~~~l~i~G~g~~-----~~~l~~~~~----~~~i~~~g~~~---~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 271 (385)
++++++|+|+|+. .+.++++.. ..+|+++|+++ ++++..+|+.||++|+||..|++|++++|||
T Consensus 257 ~~~~~~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAm 336 (416)
T 2x6q_A 257 KEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAM 336 (416)
T ss_dssp HHHCTTCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHH
T ss_pred HHhCCCeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHH
Confidence 6899999999864 233444332 35799999765 6799999999999999999999999999999
Q ss_pred hcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHH
Q 016648 272 SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-EKYDWRAATRTIRNEQ 350 (385)
Q Consensus 272 a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~~~s~~~~~~~~~~~i 350 (385)
+||+|||+++.++..+++ .++.+|++++ |+++++++|.++++|++.++++++++++.+ ++|+|+.+++++. ++
T Consensus 337 a~G~PvI~~~~~g~~e~i---~~~~~g~l~~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~fs~~~~~~~~~-~~ 410 (416)
T 2x6q_A 337 WKGKPVIGRAVGGIKFQI---VDGETGFLVR--DANEAVEVVLYLLKHPEVSKEMGAKAKERVRKNFIITKHMERYL-DI 410 (416)
T ss_dssp HTTCCEEEESCHHHHHHC---CBTTTEEEES--SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH-HH
T ss_pred HcCCCEEEccCCCChhhe---ecCCCeEEEC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHcCHHHHHHHHH-HH
Confidence 999999999999999999 8889999998 999999999999999999999999999998 4799999999997 79
Q ss_pred HHHHH
Q 016648 351 YNAAI 355 (385)
Q Consensus 351 y~~~~ 355 (385)
|++++
T Consensus 411 ~~~l~ 415 (416)
T 2x6q_A 411 LNSLG 415 (416)
T ss_dssp HHTC-
T ss_pred HHHhh
Confidence 98765
No 14
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=100.00 E-value=1.3e-36 Score=276.11 Aligned_cols=290 Identities=14% Similarity=0.148 Sum_probs=220.4
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHH--hCCeE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHR--AADLT 128 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ad~i 128 (385)
+...+.+.+++.+||+||+|+...... .....+..+++.+.+.|+..... .........+++..+. .+|.+
T Consensus 68 ~~~~l~~~i~~~~~Dvv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~d~i 140 (374)
T 2iw1_A 68 YYAWVQNHLKEHPADRVVGFNKMPGLD-VYFAADVCYAEKVAQEKGFLYRL------TSRYRHYAAFERATFEQGKSTKL 140 (374)
T ss_dssp HHHHHHHHHHHSCCSEEEESSCCTTCS-EEECCSCCHHHHHHHHCCHHHHT------SHHHHHHHHHHHHHHSTTCCCEE
T ss_pred HHHHHHHHHhccCCCEEEEecCCCCce-eeeccccccceeeeecccchhhh------cHHHHHHHHHHHHHhhccCCcEE
Confidence 456788889999999999997522110 00000001112222223211100 0111222334555554 69999
Q ss_pred EEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCCh---hhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHH
Q 016648 129 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS---EMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMD 205 (385)
Q Consensus 129 i~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~ 205 (385)
+++|+..++.+.+.++.+..++.++|||+|.+.+.+..... ..+.+.. .++++++++|+|++.+.||++.++++++
T Consensus 141 i~~s~~~~~~~~~~~~~~~~~~~vi~ngv~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~G~~~~~K~~~~li~a~~ 219 (374)
T 2iw1_A 141 MMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNG-IKEQQNLLLQVGSDFGRKGVDRSIEALA 219 (374)
T ss_dssp EESCHHHHHHHHHHHCCCGGGEEECCCCCCGGGSGGGSCTTHHHHHHHHTT-CCTTCEEEEEECSCTTTTTHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHhCCChhheEEecCCcCHHhcCcccchhHHHHHHHHhC-CCCCCeEEEEeccchhhcCHHHHHHHHH
Confidence 99999999999987766778999999999988776543321 2233332 2356789999999999999999999999
Q ss_pred hC-----CCceEEEEeCCccHHHHHHHHc----CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCc
Q 016648 206 RL-----PEARIAFIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIP 276 (385)
Q Consensus 206 ~~-----~~~~l~i~G~g~~~~~l~~~~~----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~P 276 (385)
.+ ++++++++|+|+. +.+++++. ..+|+++|+. +++.++|+.||++|+||..|++|++++|||+||+|
T Consensus 220 ~l~~~~~~~~~l~i~G~g~~-~~~~~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~P 296 (374)
T 2iw1_A 220 SLPESLRHNTLLFVVGQDKP-RKFEALAEKLGVRSNVHFFSGR--NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLP 296 (374)
T ss_dssp TSCHHHHHTEEEEEESSSCC-HHHHHHHHHHTCGGGEEEESCC--SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCC
T ss_pred HhHhccCCceEEEEEcCCCH-HHHHHHHHHcCCCCcEEECCCc--ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCC
Confidence 87 3689999998874 45555544 2479999985 89999999999999999999999999999999999
Q ss_pred EEEecCCCCCcccccCCCCCeeEeeC-CCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 016648 277 VVGVRAGGIPDIIPEDQDGKIGYLFN-PGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 277 vI~s~~~~~~e~~~~~~~~~~g~~~~-~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~ 355 (385)
||+++.++..+++ .++.+|++++ ++|+++++++|.++++|++.++++++++++.+++++|+.+++++. .++++.+
T Consensus 297 vi~~~~~~~~e~i---~~~~~g~~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l 372 (374)
T 2iw1_A 297 VLTTAVCGYAHYI---ADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAA-DIITGGL 372 (374)
T ss_dssp EEEETTSTTTHHH---HHHTCEEEECSSCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCCSCHHHHHH-HHHHCC-
T ss_pred EEEecCCCchhhh---ccCCceEEeCCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHhh
Confidence 9999999999999 7889999998 889999999999999999999999999999998999999999996 5776554
No 15
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=99.98 E-value=8.9e-33 Score=252.35 Aligned_cols=265 Identities=10% Similarity=0.032 Sum_probs=192.4
Q ss_pred ccCCCEEEeCCCchhHHHHHHHHH----H---hCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCC--eEEEc
Q 016648 61 RFKPDIIHASSPGIMVFGALIIAK----L---LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAAD--LTLVP 131 (385)
Q Consensus 61 ~~~pDiI~~~~~~~~~~~~~~~~~----~---~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad--~ii~~ 131 (385)
..+||+||++.+... ..+..+.+ . .+.|.++.+|++.+...+.. ..+...+..+..++ .++++
T Consensus 130 ~~~~Dvv~a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~vi~~ 201 (413)
T 2x0d_A 130 VAKHDIFIATAWWTA-YAAQRIVSWQSDTYGIPPNKILYIIQDFEPGFYQWS-------SQYVLAESTYKYRGPQIAVFN 201 (413)
T ss_dssp ECTTEEEEECSHHHH-HHHHHHHHHHHHHHTCCCCCEEEEECSCGGGGSCSS-------HHHHHHHHTTSCCSCEEEEEE
T ss_pred CCCCCEEEEehHHHH-HHHHHhhhhhhhhcccccCcEEEEEeechhhcCccC-------hHHHHHHHHhccCCceEEEEc
Confidence 357999999975222 21211111 1 24678888888765422111 11224455666665 58899
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeec-cccccHHHHHHHHHhC---
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL-GVEKSLDFLKRVMDRL--- 207 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~-~~~k~~~~l~~a~~~~--- 207 (385)
|+.+++.+.+.+. +..++.+++||+|.+.+.+.. ...++...++++|++ .+.||++.+++|++.+
T Consensus 202 S~~~~~~l~~~g~-~~~~~~~i~~g~d~~~~~~~~----------~~~~~~~~il~~gr~~~~~Kg~~~li~A~~~l~~~ 270 (413)
T 2x0d_A 202 SELLKQYFNNKGY-NFTDEYFFQPKINTTLKNYIN----------DKRQKEKIILVYGRPSVKRNAFTLIVEALKIFVQK 270 (413)
T ss_dssp SHHHHHHHHHHTC-CCSEEEEECCCCCHHHHTTTT----------SCCCCCSEEEEEECTTCGGGCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCC-CCCceEEeCCCcCchhhcccc----------cccCCCCEEEEEecCchhccCHHHHHHHHHHHHHh
Confidence 9999999988743 445789999999876443210 123356788999996 6889999999999765
Q ss_pred -CC---ceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 208 -PE---ARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 208 -~~---~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
|+ ++++++|+|+.... +....+|+|+|+++.+++.++|+.||++++||..|++|++++||||||+|||+++ +
T Consensus 271 ~~~~~~~~l~ivG~~~~~~~---l~~~~~v~f~G~~~~~~l~~~~~~adv~v~pS~~E~~g~~~lEAmA~G~PVV~~~-~ 346 (413)
T 2x0d_A 271 YDRSNEWKIISVGEKHKDIA---LGKGIHLNSLGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHFGLRVITNK-Y 346 (413)
T ss_dssp CTTGGGCEEEEEESCCCCEE---EETTEEEEEEESCCHHHHHHHHHHCCEEECCCSSSSCCSHHHHHHHTTCEEEEEC-B
T ss_pred CCCCCceEEEEEcCCchhhh---cCCcCcEEEcCCCCHHHHHHHHHhCCEEEEecCCCCCCcHHHHHHhCCCcEEEeC-C
Confidence 43 89999998865421 1223479999999999999999999999999999999999999999999999965 5
Q ss_pred CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Q 016648 284 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 284 ~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~ 356 (385)
+..|++ .++.+|++++++|+++++++|.++++|++.+++ ++++.+++|+|+...+++ ++|+++..
T Consensus 347 g~~e~v---~~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~---~~~~~~~~~~W~~~~~~~--~~~~~l~~ 411 (413)
T 2x0d_A 347 ENKDLS---NWHSNIVSLEQLNPENIAETLVELCMSFNNRDV---DKKESSNMMFYINEFNEF--SFIKEIEE 411 (413)
T ss_dssp TTBCGG---GTBTTEEEESSCSHHHHHHHHHHHHHHTC----------CCBSCGGGCCCC-----TTHHHHHT
T ss_pred Ccchhh---hcCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH---hHHHHHHhCCHHHHHHHH--HHHHHHHh
Confidence 568999 788999999999999999999999998877666 455556779999999885 58888753
No 16
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=99.98 E-value=7e-33 Score=253.28 Aligned_cols=247 Identities=15% Similarity=0.146 Sum_probs=190.9
Q ss_pred CCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHHHh
Q 016648 63 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 142 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 142 (385)
++|+||.+.... .. ...+++..++|++++.|+..... .. .........++..++.+|.++++|+.+++.+.+.
T Consensus 124 ~~DvIh~~~~~~-~~-~~~~~~~~~~p~v~~~h~~~~~~--~~---~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~~~~~ 196 (406)
T 2hy7_A 124 ESDVIVFESGIA-VA-FIELAKRVNPAAKLVYRASDGLS--TI---NVASYIEREFDRVAPTLDVIALVSPAMAAEVVSR 196 (406)
T ss_dssp HCSEEEEESSGG-GG-GHHHHHHHCTTSEEEEEESSCHH--HH---TCCHHHHHHHHHHGGGCSEEEESCGGGGGGCSCS
T ss_pred CCCEEEECCchH-HH-HHHHHHHhCCCEEEEEeccchhh--cc---cccHHHHHHHHHHHHhCCEEEEcCHHHHHHHHhc
Confidence 689999544321 11 11345678999999999853200 00 0123345577888999999999999999887654
Q ss_pred cccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHH
Q 016648 143 RVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYRE 222 (385)
Q Consensus 143 ~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~ 222 (385)
+ ++.++|||+|.+.+.+.... ..+++++++|+|++.+.||+ +..+.+..++++++|+|+|+
T Consensus 197 ~-----~i~vipngvd~~~f~~~~~~---------~~~~~~~i~~vGrl~~~Kg~--~~~l~~~~~~~~l~ivG~g~--- 257 (406)
T 2hy7_A 197 D-----NVFHVGHGVDHNLDQLGDPS---------PYAEGIHAVAVGSMLFDPEF--FVVASKAFPQVTFHVIGSGM--- 257 (406)
T ss_dssp T-----TEEECCCCBCTTHHHHHCSC---------SCCSSEEEEEECCTTBCHHH--HHHHHHHCTTEEEEEESCSS---
T ss_pred C-----CEEEEcCCcChHhcCccccc---------ccCCCcEEEEEeccccccCH--HHHHHHhCCCeEEEEEeCch---
Confidence 3 89999999998766432111 12234789999999999999 44444567899999999887
Q ss_pred HHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHH-------hcCCcEEEecCCCCCcccccCCCC
Q 016648 223 ELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM-------SSGIPVVGVRAGGIPDIIPEDQDG 295 (385)
Q Consensus 223 ~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~-------a~G~PvI~s~~~~~~e~~~~~~~~ 295 (385)
.+++....+|+|+|+++++++..+|+.||++|+||..|++|++++||| +||+|||+|+. + .++
T Consensus 258 -~~~~~l~~~V~f~G~~~~~~l~~~~~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIas~~------v---~~~ 327 (406)
T 2hy7_A 258 -GRHPGYGDNVIVYGEMKHAQTIGYIKHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVCPNA------V---VGP 327 (406)
T ss_dssp -CCCTTCCTTEEEECCCCHHHHHHHHHTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEEEGG------G---TCS
T ss_pred -HHhcCCCCCEEEcCCCCHHHHHHHHHhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEEehh------c---ccC
Confidence 222223457999999999999999999999999999999999999999 99999999987 5 677
Q ss_pred CeeEe-eCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH--HHHHH
Q 016648 296 KIGYL-FNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQ--YNAAI 355 (385)
Q Consensus 296 ~~g~~-~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~i--y~~~~ 355 (385)
.+|++ ++++|+++++++|.++++|++ +...++|+|+.++++++ ++ |+++.
T Consensus 328 ~~G~l~v~~~d~~~la~ai~~ll~~~~---------~~~~~~~sw~~~a~~~~-~~~~y~~~~ 380 (406)
T 2hy7_A 328 YKSRFGYTPGNADSVIAAITQALEAPR---------VRYRQCLNWSDTTDRVL-DPRAYPETR 380 (406)
T ss_dssp CSSEEEECTTCHHHHHHHHHHHHHCCC---------CCCSCCCBHHHHHHHHH-CGGGSGGGB
T ss_pred cceEEEeCCCCHHHHHHHHHHHHhCcc---------hhhhhcCCHHHHHHHHH-HhhcccccC
Confidence 88999 999999999999999999876 12346799999999997 57 77653
No 17
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=99.98 E-value=1e-31 Score=243.96 Aligned_cols=278 Identities=18% Similarity=0.170 Sum_probs=206.9
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
..++.+.+++.+||+||+|+.....+.+...++..++|++.+.|+... ... .... ......+.+.+.+|.++++
T Consensus 84 ~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~~~~~~ip~v~~~~~~~~--~~~--~~~~--~~~~~~~~~~~~~d~ii~~ 157 (375)
T 3beo_A 84 LEGLDKVMKEAKPDIVLVHGDTTTTFIASLAAFYNQIPVGHVEAGLRT--WDK--YSPY--PEEMNRQLTGVMADLHFSP 157 (375)
T ss_dssp HHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHHTTCCEEEESCCCCC--SCT--TSST--THHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccc--ccc--cCCC--hhHhhhhHHhhhhheeeCC
Confidence 456888999999999999876444444555677889999977665421 000 0000 0112233344569999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCC-CCCCCCCCCC-CChhhHhhhcCCCCCCcEEEEEeecccc-ccHHHHHHHHHhC-
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKG-VDSESFHPRF-RSSEMRWRLSNGEPDKPLIVHVGRLGVE-KSLDFLKRVMDRL- 207 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~-v~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~G~~~~~-k~~~~l~~a~~~~- 207 (385)
|+..++.+.+.+ .+.+++.+++|| +|...+.+.. .....+.+. .+++++++++|++... ||++.++++++.+
T Consensus 158 s~~~~~~~~~~g-~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~---~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~ 233 (375)
T 3beo_A 158 TAKSATNLQKEN-KDESRIFITGNTAIDALKTTVKETYSHPVLEKL---GNNRLVLMTAHRRENLGEPMRNMFRAIKRLV 233 (375)
T ss_dssp SHHHHHHHHHTT-CCGGGEEECCCHHHHHHHHHCCSSCCCHHHHTT---TTSEEEEEECCCGGGTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC-CCcccEEEECChhHhhhhhhhhhhhhHHHHHhc---cCCCeEEEEecccccchhHHHHHHHHHHHHH
Confidence 999999998764 456789999999 7755443221 111222221 2345567899998875 9999999999765
Q ss_pred ---CCceEEEEeCCcc---HHHHHHHHcC-CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 208 ---PEARIAFIGDGPY---REELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 208 ---~~~~l~i~G~g~~---~~~l~~~~~~-~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
+++++++ |.|+. .+.++++... .+|++.|+++..++..+|+.||++|+|| |..++|||+||+|||++
T Consensus 234 ~~~~~~~~i~-~~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~s-----g~~~lEA~a~G~Pvi~~ 307 (375)
T 3beo_A 234 DKHEDVQVVY-PVHMNPVVRETANDILGDYGRIHLIEPLDVIDFHNVAARSYLMLTDS-----GGVQEEAPSLGVPVLVL 307 (375)
T ss_dssp HHCTTEEEEE-ECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTCSEEEECC-----HHHHHHHHHHTCCEEEC
T ss_pred hhCCCeEEEE-eCCCCHHHHHHHHHHhhccCCEEEeCCCCHHHHHHHHHhCcEEEECC-----CChHHHHHhcCCCEEEe
Confidence 6788554 65543 3445554332 5899999999999999999999999998 67799999999999999
Q ss_pred cC-CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 016648 281 RA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQY 351 (385)
Q Consensus 281 ~~-~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy 351 (385)
+. ++.++++ .++ +|+++++ |+++++++|.++++|++.+++|+++++++.++|+|+++++.+. .++
T Consensus 308 ~~~~~~~e~v---~~g-~g~~v~~-d~~~la~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~ 373 (375)
T 3beo_A 308 RDTTERPEGI---EAG-TLKLAGT-DEETIFSLADELLSDKEAHDKMSKASNPYGDGRASERIVEAIL-KHF 373 (375)
T ss_dssp SSCCSCHHHH---HTT-SEEECCS-CHHHHHHHHHHHHHCHHHHHHHCCCCCTTCCSCHHHHHHHHHH-HHT
T ss_pred cCCCCCceee---cCC-ceEEcCC-CHHHHHHHHHHHHhChHhHhhhhhcCCCCCCCcHHHHHHHHHH-HHh
Confidence 64 8889988 677 9999976 9999999999999999999999998887777799999999886 444
No 18
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=99.97 E-value=1.9e-32 Score=249.61 Aligned_cols=289 Identities=15% Similarity=0.097 Sum_probs=211.4
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHH-HHhCCeEEE
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFL-HRAADLTLV 130 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ad~ii~ 130 (385)
..++.+++++.+||+||+|+.....+.+.+.++..++|++.+.|+..... . . . .......+.+ .+.+|.+++
T Consensus 75 ~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~~~--~-~-~---~~~~~~~~~~~~~~~d~ii~ 147 (384)
T 1vgv_A 75 LEGLKPILAEFKPDVVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGD--L-Y-S---PWPEEANRTLTGHLAMYHFS 147 (384)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHTTTCCEEEESCCCCCSC--T-T-S---STTHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEeccccccc--c-c-C---CCchHhhHHHHHhhccEEEc
Confidence 46788899999999999997634444455566778999998888753211 0 0 0 0111123333 566999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCC-CCCCCCCCCCC------hhhHhhhc-CCCCCCcEEEEEeecccc-ccHHHHH
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRS------SEMRWRLS-NGEPDKPLIVHVGRLGVE-KSLDFLK 201 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v-~~~~~~~~~~~------~~~~~~~~-~~~~~~~~i~~~G~~~~~-k~~~~l~ 201 (385)
+|+..++.+.+.+ .+.+++.+++|++ |...+.+.... ...+.++. ...+++.+++++|++... ||++.++
T Consensus 148 ~s~~~~~~l~~~g-~~~~~i~vi~n~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~gr~~~~~kg~~~li 226 (384)
T 1vgv_A 148 PTETSRQNLLREN-VADSRIFITGNTVIDALLWVRDQVMSSDKLRSELAANYPFIDPDKKMILVTGHRRESFGRGFEEIC 226 (384)
T ss_dssp SSHHHHHHHHHTT-CCGGGEEECCCHHHHHHHHHHHHTTTCHHHHHHHHTTCTTCCTTSEEEEEECCCBSSCCHHHHHHH
T ss_pred CcHHHHHHHHHcC-CChhhEEEeCChHHHHHHhhhhccccchhhhHHHHHhccccCCCCCEEEEEeCCccccchHHHHHH
Confidence 9999999998754 4567899999995 32211111000 01112211 112234578899999876 9999999
Q ss_pred HHHHhC----CCceEEEE-eCCc-cHHHHHHHHcC-CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcC
Q 016648 202 RVMDRL----PEARIAFI-GDGP-YREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG 274 (385)
Q Consensus 202 ~a~~~~----~~~~l~i~-G~g~-~~~~l~~~~~~-~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G 274 (385)
++++.+ +++++++. |.++ ..+.++++... .+|++.|+++.+++..+|+.||++|+|| |..++|||++|
T Consensus 227 ~a~~~l~~~~~~~~l~i~~g~~~~~~~~l~~~~~~~~~v~~~g~~~~~~~~~~~~~ad~~v~~S-----g~~~lEA~a~G 301 (384)
T 1vgv_A 227 HALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPFVWLMNHAWLILTDS-----GGIQEEAPSLG 301 (384)
T ss_dssp HHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHCSEEEESS-----STGGGTGGGGT
T ss_pred HHHHHHHhhCCCeEEEEEcCCCHHHHHHHHHHhhcCCCEEEeCCCCHHHHHHHHHhCcEEEECC-----cchHHHHHHcC
Confidence 998765 67888875 5443 45666666443 4899999998899999999999999999 34489999999
Q ss_pred CcEEEecC-CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q 016648 275 IPVVGVRA-GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNA 353 (385)
Q Consensus 275 ~PvI~s~~-~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~ 353 (385)
+|||+++. ++..+++ +++ +|+++++ |+++++++|.++++|++.+++|+++++++.++|+|+++++.+. ++|++
T Consensus 302 ~PvI~~~~~~~~~e~v---~~g-~g~lv~~-d~~~la~~i~~ll~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~ 375 (384)
T 1vgv_A 302 KPVLVMRDTTERPEAV---TAG-TVRLVGT-DKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALK-NNRIS 375 (384)
T ss_dssp CCEEEESSCCSCHHHH---HHT-SEEEECS-SHHHHHHHHHHHHHCHHHHHHHHSSCCTTCCSCHHHHHHHHHH-HTCCC
T ss_pred CCEEEccCCCCcchhh---hCC-ceEEeCC-CHHHHHHHHHHHHhChHHHhhhhhccCCCcCCCHHHHHHHHHH-HHHHh
Confidence 99999987 8888888 667 9999977 9999999999999999999999998887767799999999996 68888
Q ss_pred HHHHHH
Q 016648 354 AIWFWR 359 (385)
Q Consensus 354 ~~~~~~ 359 (385)
+.+.+.
T Consensus 376 ~~~~~~ 381 (384)
T 1vgv_A 376 LGSHHH 381 (384)
T ss_dssp C-----
T ss_pred hccccc
Confidence 876543
No 19
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=99.97 E-value=1.9e-30 Score=239.76 Aligned_cols=275 Identities=16% Similarity=0.108 Sum_probs=200.5
Q ss_pred CCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEcChhHHHHHHHh
Q 016648 63 KPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVPSVAIGKDLEAA 142 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~~~~~~ 142 (385)
.+|+||+|++....++.++..+..++|+++++|..+|.........+ ...+.+ .+..+|.+...+....+.+...
T Consensus 123 ~~DiV~vHdyhl~~l~~~lr~~~~~~~i~~~~H~pfp~~~~~~~lp~----~~~il~-~ll~~d~i~f~~~~~~~~f~~~ 197 (482)
T 1uqt_A 123 DDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPT----YDTLLE-QLCDYDLLGFQTENDRLAFLDC 197 (482)
T ss_dssp TTCEEEEESGGGTTHHHHHHHTTCCSCEEEECCSCCCCHHHHTTSTT----HHHHHH-HHTTSSEEEESSHHHHHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHhCCCCcEEEEEcCCCCCHHHHhhCcc----HHHHHH-hhhccCeEEEECHHHHHHHHHH
Confidence 46999999986655555443334489999999997653211111111 111111 2345777777766655554321
Q ss_pred -----------------cccCCCcEEEeeCCCCCCCCCCCCC---C---hhhHhhhcCCCCCCcEEEEEeeccccccHHH
Q 016648 143 -----------------RVTAANKIRIWKKGVDSESFHPRFR---S---SEMRWRLSNGEPDKPLIVHVGRLGVEKSLDF 199 (385)
Q Consensus 143 -----------------~~~~~~~i~vi~~~v~~~~~~~~~~---~---~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~ 199 (385)
++ ...++.++|||+|.+.|.+... . ...+.++ .++++|+++||+++.||++.
T Consensus 198 ~~~~l~~~~~~~~~~~~~g-~~~~v~vip~GID~~~f~~~~~~~~~~~~~~lr~~~----~~~~vil~VgRl~~~Kgi~~ 272 (482)
T 1uqt_A 198 LSNLTRVTTRSAKSHTAWG-KAFRTEVYPIGIEPKEIAKQAAGPLPPKLAQLKAEL----KNVQNIFSVERLDYSKGLPE 272 (482)
T ss_dssp HHHHSCEEEETTTEEEETT-EEEEEEECCCCCCHHHHHHHHHSCCCHHHHHHHHHT----TTCEEEEEECCBCGGGCHHH
T ss_pred HHHHhCCccccCCeEEECC-eEEEEEEEeccCCHHHHHHHhcCcchHHHHHHHHHh----CCCEEEEEEeCCcccCCHHH
Confidence 11 2357899999999877653211 1 1222222 26789999999999999999
Q ss_pred HHHHHHhC----C----CceEEEEeC-----Ccc----HHHHHHHHcC----------CCeE-EecccChHHHHHHHHhC
Q 016648 200 LKRVMDRL----P----EARIAFIGD-----GPY----REELEKMFTG----------MPAV-FTGMLLGEELSQAYASG 251 (385)
Q Consensus 200 l~~a~~~~----~----~~~l~i~G~-----g~~----~~~l~~~~~~----------~~i~-~~g~~~~~~~~~~~~~a 251 (385)
+++|++++ | ++.++++|. ++. .+++++++.+ .+|+ +.|.++.+++..+|+.|
T Consensus 273 ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v~~~~g~v~~~el~~ly~~A 352 (482)
T 1uqt_A 273 RFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYS 352 (482)
T ss_dssp HHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSEEEECSCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceEEEeCCCCCHHHHHHHHHHc
Confidence 99999765 3 367888984 222 2344444322 1366 47999999999999999
Q ss_pred cEEEEcCCCCCCcHHHHHHHhcCC-----cEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC-HHHHHH
Q 016648 252 DVFVMPSESETLGLVVLEAMSSGI-----PVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRET 325 (385)
Q Consensus 252 di~v~ps~~e~~~~~~~Ea~a~G~-----PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~-~~~~~~ 325 (385)
|++++||..||||++++|||+||+ |+|+|+.+|..+.+ . +|+++++.|+++++++|.+++++ ++++++
T Consensus 353 Dv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~S~~~G~~~~l---~---~g~lv~p~d~~~lA~ai~~lL~~~~~~r~~ 426 (482)
T 1uqt_A 353 DVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL---T---SALIVNPYDRDEVAAALDRALTMSLAERIS 426 (482)
T ss_dssp SEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGGTC---T---TSEEECTTCHHHHHHHHHHHHTCCHHHHHH
T ss_pred cEEEECCCcccCCchHHHHHHhCCCCCCCCEEEECCCCCHHHh---C---CeEEECCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999997 99999988888777 3 68999999999999999999984 677889
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q 016648 326 MGQAARQEMEKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 326 ~~~~a~~~~~~~s~~~~~~~~~~~iy~~~ 354 (385)
+.+++++.+++|||+.++++++ ..|+++
T Consensus 427 ~~~~~~~~v~~~s~~~~a~~~l-~~l~~~ 454 (482)
T 1uqt_A 427 RHAEMLDVIVKNDINHWQECFI-SDLKQI 454 (482)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHH-HHHHhc
Confidence 9999999998899999999998 577665
No 20
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=99.97 E-value=3.2e-30 Score=239.05 Aligned_cols=293 Identities=14% Similarity=0.115 Sum_probs=203.0
Q ss_pred ccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCC-------ccccccc-cc----------ccchhHHHHHHHHH
Q 016648 61 RFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVP-------VYIPRYT-FS----------WLVKPMWLVIKFLH 122 (385)
Q Consensus 61 ~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~-------~~~~~~~-~~----------~~~~~~~~~~~~~~ 122 (385)
+.+|||+|+|++.....+.++..+..++++|+|+|.... ...+... .. ........+++...
T Consensus 179 ~~~pdIiH~HDW~tg~~~~~Lk~~~~~i~tVfTiH~telGR~lagqg~~~~y~~L~~~~~d~ea~~~~i~~~~~~EKaga 258 (725)
T 3nb0_A 179 SQHAIVAHFHEWLAGVALPLCRKRRIDVVTIFTTHATLLGRYLCASGSFDFYNCLESVDVDHEAGRFGIYHRYCIERAAA 258 (725)
T ss_dssp CSEEEEEEEESGGGCTHHHHHHHTTCSCEEEEEESSCHHHHHHTSSSCSCHHHHGGGCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCcEEEeCchhhhHHHHHHHHhCCCCCEEEEEecchhhhhhhhcCCCchhhhhhhcCCChhhhhhchhHHHHHHHHHH
Confidence 356999999998655444443334558999999999621 1000000 00 00112345688889
Q ss_pred HhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCCh----hhHhhh------------cCCCCCCcEEE
Q 016648 123 RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSS----EMRWRL------------SNGEPDKPLIV 186 (385)
Q Consensus 123 ~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~----~~~~~~------------~~~~~~~~~i~ 186 (385)
..||.|+|+|+.+++++...+..+.+.+ ||||+|.+.|.+..... ..+.+. ....++.+++.
T Consensus 259 ~~AD~ITTVS~~yA~Ei~~Ll~r~~d~i--IpNGID~~~f~p~~~~~~~k~~aK~klq~~l~~~~~~~l~l~~dk~liif 336 (725)
T 3nb0_A 259 HSADVFTTVSQITAFEAEHLLKRKPDGI--LPNGLNVIKFQAFHEFQNLHALKKEKINDFVRGHFHGCFDFDLDNTLYFF 336 (725)
T ss_dssp HHSSEEEESSHHHHHHHHHHTSSCCSEE--CCCCBCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSCGGGEEEEE
T ss_pred HhCCEEEECCHHHHHHHHHHhcCCCCEE--EcCCccccccCcchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCceeEEE
Confidence 9999999999999999998876555544 99999999998852211 111111 11123445666
Q ss_pred EEeecc-ccccHHHHHHHHHhCC--------C---ceEEEEeCCccH---------------------------------
Q 016648 187 HVGRLG-VEKSLDFLKRVMDRLP--------E---ARIAFIGDGPYR--------------------------------- 221 (385)
Q Consensus 187 ~~G~~~-~~k~~~~l~~a~~~~~--------~---~~l~i~G~g~~~--------------------------------- 221 (385)
.+||+. ..||++.+++|+.++. + +.|+++..+...
T Consensus 337 ivgRle~~nKGiDl~ieAl~~L~~~l~~~~~~~~vvafii~p~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~ 416 (725)
T 3nb0_A 337 IAGRYEYKNKGADMFIEALARLNYRLKVSGSKKTVVAFIVMPAKNNSFTVEALKGQAEVRALENTVHEVTTSIGKRIFDH 416 (725)
T ss_dssp EESSCCTTTTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCCHHHHHHHHHHHHHHHhhccCCCcEEEEEEeCCCCCCCchhhhcchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 789999 6799999999997761 1 445555432100
Q ss_pred -----------------H---------HHH----------------------------------HHHcCC------CeEE
Q 016648 222 -----------------E---------ELE----------------------------------KMFTGM------PAVF 235 (385)
Q Consensus 222 -----------------~---------~l~----------------------------------~~~~~~------~i~~ 235 (385)
+ .++ ++.... +|+|
T Consensus 417 ~~~~~~~~~~~~~p~~~~~~l~~~~~~~lkr~~~~~~~~~~~lpp~~TH~~~~~~~D~Il~~~r~l~L~N~~~drVKVIf 496 (725)
T 3nb0_A 417 AIRYPHNGLTTELPTDLGELLKSSDKVMLKRRILALRRPEGQLPPIVTHNMVDDANDLILNKIRQVQLFNSPSDRVKMIF 496 (725)
T ss_dssp HHHTTSTTCCSSSCCCHHHHCCHHHHHHHHHHHHHHCCCTTCCCCSBSEEETTGGGCHHHHHHHHHTCCCCTTCSEEEEE
T ss_pred HhcccccccCCCCCCCHHHhcChHHHHHHHHHHHhhccCCCCCCCeeeeecccCCccHHHHHHHhcCCCCCcCCceeEEE
Confidence 0 000 000000 1455
Q ss_pred e-cccChH------HHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCC-------CeeEee
Q 016648 236 T-GMLLGE------ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDG-------KIGYLF 301 (385)
Q Consensus 236 ~-g~~~~~------~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~-------~~g~~~ 301 (385)
+ ++++.. ++.++|+.||++|+||.+|+||++++|||+||+|||+|+.+|..+.+ .++ .+|+++
T Consensus 497 ~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~s~~gG~~d~V---~dg~~~~~~~~tG~lV 573 (725)
T 3nb0_A 497 HPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYM---EDLIETNQAKDYGIYI 573 (725)
T ss_dssp CCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEEETTBHHHHHH---HTTSCHHHHHHTTEEE
T ss_pred eccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEEeCCCChhhhh---hccccccCCCCceEEE
Confidence 4 667665 58999999999999999999999999999999999999999999988 554 368877
Q ss_pred C---CCCHHHHHHHHhHhhc-----CHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Q 016648 302 N---PGDLDDCLSKLEPLLY-----NQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAIWFWR 359 (385)
Q Consensus 302 ~---~~~~~~l~~~i~~ll~-----~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~~~~~ 359 (385)
. +.|+++++++|.+++. +++.++.+++++++.+++|+|++++++++ ++|++++....
T Consensus 574 ~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~A~~FSWe~iA~~Yl-~~Ye~aL~~~~ 638 (725)
T 3nb0_A 574 VDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEALSDLLDWKRMGLEYV-KARQLALRRGY 638 (725)
T ss_dssp ECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHGGGGGBHHHHHHHHH-HHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHhhcc
Confidence 3 4566666666655553 67788899999988888999999999998 79999997543
No 21
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.97 E-value=4.6e-30 Score=232.10 Aligned_cols=258 Identities=17% Similarity=0.191 Sum_probs=200.0
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
..++.+.+++.+||+||++.+... +.+...++..++|+|++.|+..+. ...+++.+.+|.+++.
T Consensus 85 ~~~l~~~l~~~~pDvv~~~~~~~~-~~~~~~~~~~~~p~v~~~~~~~~~---------------~~~~~~~~~~d~v~~~ 148 (364)
T 1f0k_A 85 WRQARAIMKAYKPDVVLGMGGYVS-GPGGLAAWSLGIPVVLHEQNGIAG---------------LTNKWLAKIATKVMQA 148 (364)
T ss_dssp HHHHHHHHHHHCCSEEEECSSTTH-HHHHHHHHHTTCCEEEEECSSSCC---------------HHHHHHTTTCSEEEES
T ss_pred HHHHHHHHHhcCCCEEEEeCCcCc-hHHHHHHHHcCCCEEEEecCCCCc---------------HHHHHHHHhCCEEEec
Confidence 456788889999999999976422 334556778899999988885421 1345677889999998
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCc-EEEEEeeccccccHHHHHHHHHhCC-C
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKP-LIVHVGRLGVEKSLDFLKRVMDRLP-E 209 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~G~~~~~k~~~~l~~a~~~~~-~ 209 (385)
++.. + + ++.+++||++.+.+.+.. .+.+... .++.+ ++++.|++.+.|+.+.++++++.++ +
T Consensus 149 ~~~~-------~--~--~~~~i~n~v~~~~~~~~~----~~~~~~~-~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~~ 212 (364)
T 1f0k_A 149 FPGA-------F--P--NAEVVGNPVRTDVLALPL----PQQRLAG-REGPVRVLVVGGSQGARILNQTMPQVAAKLGDS 212 (364)
T ss_dssp STTS-------S--S--SCEECCCCCCHHHHTSCC----HHHHHTT-CCSSEEEEEECTTTCCHHHHHHHHHHHHHHGGG
T ss_pred Chhh-------c--C--CceEeCCccchhhcccch----hhhhccc-CCCCcEEEEEcCchHhHHHHHHHHHHHHHhcCC
Confidence 8764 1 2 578999999877654321 1122222 23444 4556678999999999999998875 6
Q ss_pred ce-EEEEeCCccHHHHHHHHcC---CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCC
Q 016648 210 AR-IAFIGDGPYREELEKMFTG---MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 285 (385)
Q Consensus 210 ~~-l~i~G~g~~~~~l~~~~~~---~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~ 285 (385)
++ ++++|+++ .+.+++.+.+ .+|++.|++ +++..+|+.||++|+||. |++++|||++|+|||+++.++.
T Consensus 213 ~~~l~i~G~~~-~~~l~~~~~~~~~~~v~~~g~~--~~~~~~~~~ad~~v~~sg----~~~~~EAma~G~Pvi~~~~~g~ 285 (364)
T 1f0k_A 213 VTIWHQSGKGS-QQSVEQAYAEAGQPQHKVTEFI--DDMAAAYAWADVVVCRSG----ALTVSEIAAAGLPALFVPFQHK 285 (364)
T ss_dssp EEEEEECCTTC-HHHHHHHHHHTTCTTSEEESCC--SCHHHHHHHCSEEEECCC----HHHHHHHHHHTCCEEECCCCCT
T ss_pred cEEEEEcCCch-HHHHHHHHhhcCCCceEEecch--hhHHHHHHhCCEEEECCc----hHHHHHHHHhCCCEEEeeCCCC
Confidence 77 56688887 3566655543 379999999 899999999999999983 9999999999999999999876
Q ss_pred C--------cccccCCCCCeeEeeCCCC--HHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 016648 286 P--------DIIPEDQDGKIGYLFNPGD--LDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 286 ~--------e~~~~~~~~~~g~~~~~~~--~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~ 355 (385)
+ ++. +++ .|++++++| +++++++|.++ |++.++++++++++.+++|+|+.+++++. .+|++.-
T Consensus 286 ~~~q~~~~~~~~---~~g-~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~ 358 (364)
T 1f0k_A 286 DRQQYWNALPLE---KAG-AAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAASIPDATERVANEVS-RVARALE 358 (364)
T ss_dssp TCHHHHHHHHHH---HTT-SEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTCCTTHHHHHHHHHH-HHHTTC-
T ss_pred chhHHHHHHHHH---hCC-cEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhhccCHHHHHHHHHH-HHHHHHH
Confidence 4 355 444 499999888 99999999999 99999999999998888899999999997 6887754
No 22
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=99.97 E-value=3.4e-29 Score=228.45 Aligned_cols=286 Identities=15% Similarity=0.096 Sum_probs=212.1
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
+.++.+.++...-|+|++|+++.+.++.++..+..+.++.+.+|..+|....- ..+-..++.-.-..+..||.|.+.
T Consensus 138 A~~i~~~~~~~~~D~VwVhDYhL~llp~~lR~~~~~~~igfFlHiPfPs~e~f---~~Lp~~~r~ell~gll~~DligF~ 214 (496)
T 3t5t_A 138 ADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYW---RILPKEIRTGILHGMLPATTIGFF 214 (496)
T ss_dssp HHHHHHHTTTCSSCEEEEESGGGTTHHHHHHHHCTTSCEEEECCSCCCCHHHH---TTSCHHHHHHHHHHHTTSSEEEES
T ss_pred HHHHHHHhccCCCCEEEEeCccHhHHHHHHHhhCCCCeEEEEEcCCCCCHHHH---hhCcHhHHHHHHHHHHhCCEEEEe
Confidence 33343433323469999999988888877666667899999999987653221 111110112223355679999999
Q ss_pred ChhHHHHHHHh----c-ccC-------------CCcEEEeeCCCCCCCCCCCCCC--hhhHhhhcCCCCCCcEEEEEeec
Q 016648 132 SVAIGKDLEAA----R-VTA-------------ANKIRIWKKGVDSESFHPRFRS--SEMRWRLSNGEPDKPLIVHVGRL 191 (385)
Q Consensus 132 s~~~~~~~~~~----~-~~~-------------~~~i~vi~~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~G~~ 191 (385)
+....+.+.+. . +.+ ..++.++|+|||.+.|.+.... ...+.+. .++.+|+++||+
T Consensus 215 t~~y~~~Fl~~~~r~l~g~~~~~~~~~v~~~gr~v~v~viP~GID~~~f~~~~~~~~~~lr~~~----~~~~lIl~VgRL 290 (496)
T 3t5t_A 215 ADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTLDGRNPQLPEGIEEWA----DGHRLVVHSGRT 290 (496)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEETTTTEEEETTEEEEEEECCCCBCGGGC----CCCCTTHHHHH----TTSEEEEEEEES
T ss_pred cHHHHHHHHHHHHHHhcCCcccccCCeEEECCEEEEEEEeccEeCHHHhchhhHHHHHHHHHHh----CCceEEEEcccC
Confidence 99888776543 1 110 1267899999999988765431 2233332 267899999999
Q ss_pred cccccHHHHHHHHHhC----CC---ceEEEEeC-----CccH----HHHHHHHcCC-------CeEEecccChHHHHHHH
Q 016648 192 GVEKSLDFLKRVMDRL----PE---ARIAFIGD-----GPYR----EELEKMFTGM-------PAVFTGMLLGEELSQAY 248 (385)
Q Consensus 192 ~~~k~~~~l~~a~~~~----~~---~~l~i~G~-----g~~~----~~l~~~~~~~-------~i~~~g~~~~~~~~~~~ 248 (385)
++.||++.+++|+ ++ |+ +.++++|. ++.. +++++++.+. .|+|+|.++.+++..+|
T Consensus 291 d~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~~V~f~g~v~~~el~aly 369 (496)
T 3t5t_A 291 DPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTVRIDNDNDVNHTIACF 369 (496)
T ss_dssp SGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCHHHHHHHH
T ss_pred ccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCcCEEEeCCCCHHHHHHHH
Confidence 9999999999998 54 54 45777762 3322 3344433221 58999999999999999
Q ss_pred HhCcEEEEcCCCCCCcHHHHHHHhcC---CcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC-HHHHH
Q 016648 249 ASGDVFVMPSESETLGLVVLEAMSSG---IPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN-QELRE 324 (385)
Q Consensus 249 ~~adi~v~ps~~e~~~~~~~Ea~a~G---~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~-~~~~~ 324 (385)
+.||++++||..||||++.+|||+|| .|+|+|+.+|..+.+ +.+|++++|.|+++++++|.+++++ +++++
T Consensus 370 ~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVlSe~aGa~~~l-----~~~allVnP~D~~~lA~AI~~aL~m~~~er~ 444 (496)
T 3t5t_A 370 RRADLLIFNSTVDGQNLSTFEAPLVNERDADVILSETCGAAEVL-----GEYCRSVNPFDLVEQAEAISAALAAGPRQRA 444 (496)
T ss_dssp HHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEEETTBTTHHHH-----GGGSEEECTTBHHHHHHHHHHHHHCCHHHHH
T ss_pred HhccEEEECcccccCChhHHHHHHhCCCCCCEEEeCCCCCHHHh-----CCCEEEECCCCHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999997 899999999988888 4578999999999999999999985 56788
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 016648 325 TMGQAARQEMEKYDWRAATRTIRNEQ 350 (385)
Q Consensus 325 ~~~~~a~~~~~~~s~~~~~~~~~~~i 350 (385)
++.++.++.+++++...+++.+++.+
T Consensus 445 ~r~~~~~~~V~~~d~~~W~~~fl~~L 470 (496)
T 3t5t_A 445 EAAARRRDAARPWTLEAWVQAQLDGL 470 (496)
T ss_dssp HHHHHHHHHHTTCBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 88899999999999999999998644
No 23
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.96 E-value=1.5e-28 Score=202.90 Aligned_cols=180 Identities=23% Similarity=0.347 Sum_probs=154.2
Q ss_pred eeCCCCCCCCC--CCCC-----ChhhHhhhcCCCCCCcEEEEEeecc-ccccHHHHHHHHHhC------CCceEEEEeCC
Q 016648 153 WKKGVDSESFH--PRFR-----SSEMRWRLSNGEPDKPLIVHVGRLG-VEKSLDFLKRVMDRL------PEARIAFIGDG 218 (385)
Q Consensus 153 i~~~v~~~~~~--~~~~-----~~~~~~~~~~~~~~~~~i~~~G~~~-~~k~~~~l~~a~~~~------~~~~l~i~G~g 218 (385)
||||+|.+.|. +... ....+.+. ..++.++++|+|++. +.||++.++++++.+ ++++++++|.+
T Consensus 2 ipngvd~~~f~~~~~~~~~~~~~~~~r~~~--~~~~~~~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~ 79 (200)
T 2bfw_A 2 SHNGIDCSFWNESYLTGSRDERKKSLLSKF--GMDEGVTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG 79 (200)
T ss_dssp ---CCCTTTSSGGGSCSCHHHHHHHHHHHT--TCCSCEEEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB
T ss_pred CCCccChhhccccccccchhhHHHHHHHHc--CCCCCCEEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCC
Confidence 68999999998 6542 23333333 334556999999999 999999999999876 47999999998
Q ss_pred c--cHHHHHHHHcCC-CeEE-ecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCC
Q 016648 219 P--YREELEKMFTGM-PAVF-TGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD 294 (385)
Q Consensus 219 ~--~~~~l~~~~~~~-~i~~-~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~ 294 (385)
+ ..+.+++++.+. +|++ +|+++++++..+|+.||++|+||..|++|++++|||++|+|||+++.++..+++ +
T Consensus 80 ~~~~~~~l~~~~~~~~~v~~~~g~~~~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~~~~~~~~e~~----~ 155 (200)
T 2bfw_A 80 DPELEGWARSLEEKHGNVKVITEMLSREFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIASAVGGLRDII----T 155 (200)
T ss_dssp CHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEEESCHHHHHHC----C
T ss_pred ChHHHHHHHHHHHhcCCEEEEeccCCHHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEEeCCCChHHHc----C
Confidence 8 777777776654 7999 999999999999999999999999999999999999999999999999988887 4
Q ss_pred CCeeEeeCCCCHHHHHHHHhHhhc-CHHHHHHHHHHHHHHHHhCC
Q 016648 295 GKIGYLFNPGDLDDCLSKLEPLLY-NQELRETMGQAARQEMEKYD 338 (385)
Q Consensus 295 ~~~g~~~~~~~~~~l~~~i~~ll~-~~~~~~~~~~~a~~~~~~~s 338 (385)
+.+|++++++|+++++++|.++++ |++.++++++++++.+++||
T Consensus 156 ~~~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~a~~~~~~fs 200 (200)
T 2bfw_A 156 NETGILVKAGDPGELANAILKALELSRSDLSKFRENCKKRAMSFS 200 (200)
T ss_dssp TTTCEEECTTCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCceEEecCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 678999999999999999999999 99999999999999885575
No 24
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.96 E-value=1.5e-28 Score=196.60 Aligned_cols=158 Identities=23% Similarity=0.344 Sum_probs=137.5
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhC---CCceEEEEeCCccHHHHHHHHcCC--CeEEecccChHHHHHHHHhCcEEEE
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRL---PEARIAFIGDGPYREELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVM 256 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~---~~~~l~i~G~g~~~~~l~~~~~~~--~i~~~g~~~~~~~~~~~~~adi~v~ 256 (385)
+++|+|+|++.+.||++.++++++.+ ++++++++|+|+..+.+++++.+. ++.+ |+++.+++..+|+.||++|+
T Consensus 2 ~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~~adv~v~ 80 (166)
T 3qhp_A 2 PFKIAMVGRYSNEKNQSVLIKAVALSKYKQDIVLLLKGKGPDEKKIKLLAQKLGVKAEF-GFVNSNELLEILKTCTLYVH 80 (166)
T ss_dssp CEEEEEESCCSTTTTHHHHHHHHHTCTTGGGEEEEEECCSTTHHHHHHHHHHHTCEEEC-CCCCHHHHHHHHTTCSEEEE
T ss_pred ceEEEEEeccchhcCHHHHHHHHHHhccCCCeEEEEEeCCccHHHHHHHHHHcCCeEEE-eecCHHHHHHHHHhCCEEEE
Confidence 46899999999999999999999988 579999999999888888877644 6788 99999999999999999999
Q ss_pred cCCCCCCcHHHHHHHhcCC-cEEE-ecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH
Q 016648 257 PSESETLGLVVLEAMSSGI-PVVG-VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM 334 (385)
Q Consensus 257 ps~~e~~~~~~~Ea~a~G~-PvI~-s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~ 334 (385)
||..|++|++++|||++|+ |||+ ++.++..+++ .++.+ +++++|+++++++|.++++|++.++++++++++.+
T Consensus 81 ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~---~~~~~--~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~ 155 (166)
T 3qhp_A 81 AANVESEAIACLEAISVGIVPVIANSPLSATRQFA---LDERS--LFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSA 155 (166)
T ss_dssp CCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGC---SSGGG--EECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhc---cCCce--EEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 9999999999999999998 9999 5678889988 55443 77888999999999999999999999999999999
Q ss_pred HhCCHHHHHHH
Q 016648 335 EKYDWRAATRT 345 (385)
Q Consensus 335 ~~~s~~~~~~~ 345 (385)
++|+|+.++++
T Consensus 156 ~~~s~~~~~~~ 166 (166)
T 3qhp_A 156 LNYTLENSVIQ 166 (166)
T ss_dssp HHHC-------
T ss_pred HHCChhhhhcC
Confidence 88999998763
No 25
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.96 E-value=3.9e-28 Score=232.39 Aligned_cols=263 Identities=12% Similarity=0.082 Sum_probs=198.6
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhH-HHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMV-FGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~-~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
..++.+.+++.+|||||.++..... ....+ + ....|++++.|++.... . .... .+..+|.+++
T Consensus 271 ~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~---~~~~----------~~~~~d~~i~ 334 (568)
T 2vsy_A 271 HLATAKHIRHHGIDLLFDLRGWGGGGRPEVF-A-LRPAPVQVNWLAYPGTS-G---APWM----------DYVLGDAFAL 334 (568)
T ss_dssp HHHHHHHHHHTTCSEEEECSSCTTCSSCHHH-H-TCCSSEEEEESSSSSCC-C---CTTC----------CEEEECTTTS
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCcchHHHH-h-cCCCceeEeeecCCccc-C---CCCc----------eEEEECCCcC
Confidence 5678899999999999987543211 11111 1 23568888877742111 1 0000 1124788889
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC---
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--- 207 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--- 207 (385)
+|+...+ + .+++.++||........+.......+.++ ..++..+++++|++.+ ||++.+++++..+
T Consensus 335 ~s~~~~~-----~---~~~i~~ipn~~~~~~~~~~~~~~~~r~~~--~~~~~~~v~~~g~~~~-K~~~~li~a~~~l~~~ 403 (568)
T 2vsy_A 335 PPALEPF-----Y---SEHVLRLQGAFQPSDTSRVVAEPPSRTQC--GLPEQGVVLCCFNNSY-KLNPQSMARMLAVLRE 403 (568)
T ss_dssp CTTTGGG-----C---SSEEEECSSCSCCCCTTCCCCCCCCTGGG--TCCTTSCEEEECCCGG-GCCHHHHHHHHHHHHH
T ss_pred CcccccC-----C---cceeEcCCCcCCCCCCCCCCCCCCCcccc--CCCCCCEEEEeCCccc-cCCHHHHHHHHHHHHh
Confidence 8886543 2 26899999955433211111111122222 2234445679999999 9999999998765
Q ss_pred -CCceEEEEe-CCccHHHHHHHHcC-----CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE-
Q 016648 208 -PEARIAFIG-DGPYREELEKMFTG-----MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG- 279 (385)
Q Consensus 208 -~~~~l~i~G-~g~~~~~l~~~~~~-----~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~- 279 (385)
|+++++|+| +|+..+.+++.+.+ .+|+|.|+++++++..+|+.||++|+||.. |+|++++|||+||+|||+
T Consensus 404 ~~~~~l~i~G~~g~~~~~l~~~~~~~~l~~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~-~~g~~~lEAma~G~Pvv~~ 482 (568)
T 2vsy_A 404 VPDSVLWLLSGPGEADARLRAFAHAQGVDAQRLVFMPKLPHPQYLARYRHADLFLDTHPY-NAHTTASDALWTGCPVLTT 482 (568)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHHTTCCGGGEEEECCCCHHHHHHHGGGCSEEECCSSS-CCSHHHHHHHHTTCCEEBC
T ss_pred CCCcEEEEecCCHHHHHHHHHHHHHcCCChhHEEeeCCCCHHHHHHHHhcCCEEeeCCCC-CCcHHHHHHHhCCCCEEec
Confidence 789999999 88888888777653 469999999999999999999999999999 999999999999999999
Q ss_pred ------ecCC-------CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH---HhCCHHHHH
Q 016648 280 ------VRAG-------GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM---EKYDWRAAT 343 (385)
Q Consensus 280 ------s~~~-------~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~---~~~s~~~~~ 343 (385)
|+.+ +.++++ .+ |++++++++.++++|++.++++++++++.+ +.|+|+.++
T Consensus 483 ~g~~~~s~~~~~~l~~~g~~e~v---~~----------~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 549 (568)
T 2vsy_A 483 PGETFAARVAGSLNHHLGLDEMN---VA----------DDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFA 549 (568)
T ss_dssp CCSSGGGSHHHHHHHHHTCGGGB---CS----------SHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSSTTCHHHHH
T ss_pred cCCCchHHHHHHHHHHCCChhhh---cC----------CHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 9999 888887 32 899999999999999999999999999998 569999999
Q ss_pred HHHHHHHHHHHHH
Q 016648 344 RTIRNEQYNAAIW 356 (385)
Q Consensus 344 ~~~~~~iy~~~~~ 356 (385)
+++. .+|++++.
T Consensus 550 ~~~~-~~y~~~~~ 561 (568)
T 2vsy_A 550 DDFG-ALLQALAR 561 (568)
T ss_dssp HHHH-HHHHHHHH
T ss_pred HHHH-HHHHHHHH
Confidence 9997 79999875
No 26
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=99.96 E-value=1.8e-27 Score=209.98 Aligned_cols=263 Identities=16% Similarity=0.100 Sum_probs=195.4
Q ss_pred HHHHHhhcc-CCCEEEeCCCchh--HHHHHHHHHH--hCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeE
Q 016648 54 RIISEVARF-KPDIIHASSPGIM--VFGALIIAKL--LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 128 (385)
Q Consensus 54 ~l~~~i~~~-~pDiI~~~~~~~~--~~~~~~~~~~--~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 128 (385)
++..++... ++|+|+++.|... .+...++.+. .++|+++.+||.+|...... +.....++.++++||.|
T Consensus 64 ~~~~~~~~~~~~DvIi~q~P~~~~~~~~~~~~~~lk~~~~k~i~~ihDl~pl~~~~~------~~~~~~E~~~y~~aD~I 137 (339)
T 3rhz_A 64 RLDGIVAGLRHGDVVIFQTPTWNTTEFDEKLMNKLKLYDIKIVLFIHDVVPLMFSGN------FYLMDRTIAYYNKADVV 137 (339)
T ss_dssp HHHHHTTTCCTTCEEEEEECCSSCHHHHHHHHHHHTTSSCEEEEEESCCHHHHCGGG------GGGHHHHHHHHTTCSEE
T ss_pred HHHHHHhcCCCCCEEEEeCCCcchhhHHHHHHHHHHhcCCEEEEEecccHHhhCccc------hhhHHHHHHHHHHCCEE
Confidence 444455544 6899999988542 2223334443 48999999999987654321 12233789999999999
Q ss_pred EEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCC
Q 016648 129 LVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLP 208 (385)
Q Consensus 129 i~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~ 208 (385)
+++|+.+++.+.+.+. +..++.++++. +.. .+... . ...++++++|+|+++....+..+ .+
T Consensus 138 i~~S~~~~~~l~~~G~-~~~ki~~~~~~-~~~--~~~~~--------~-~~~~~~~i~yaG~l~k~~~L~~l------~~ 198 (339)
T 3rhz_A 138 VAPSQKMIDKLRDFGM-NVSKTVVQGMW-DHP--TQAPM--------F-PAGLKREIHFPGNPERFSFVKEW------KY 198 (339)
T ss_dssp EESCHHHHHHHHHTTC-CCSEEEECCSC-CCC--CCCCC--------C-CCEEEEEEEECSCTTTCGGGGGC------CC
T ss_pred EECCHHHHHHHHHcCC-CcCceeecCCC-Ccc--Ccccc--------c-ccCCCcEEEEeCCcchhhHHHhC------CC
Confidence 9999999999998764 44677655442 211 01000 0 12345789999999854332221 27
Q ss_pred CceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC-------CCCCcHHHHHHHhcCCcEEEec
Q 016648 209 EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-------SETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 209 ~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~-------~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
+++|+|+|+|++. + .. ||+|+|++|.++++.+++.+|+.++... ....|.+++||||+|+|||+++
T Consensus 199 ~~~f~ivG~G~~~----~--l~-nV~f~G~~~~~el~~~l~~~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~ 271 (339)
T 3rhz_A 199 DIPLKVYTWQNVE----L--PQ-NVHKINYRPDEQLLMEMSQGGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQE 271 (339)
T ss_dssp SSCEEEEESCCCC----C--CT-TEEEEECCCHHHHHHHHHTEEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEET
T ss_pred CCeEEEEeCCccc----C--cC-CEEEeCCCCHHHHHHHHHhCCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEcc
Confidence 8999999999864 1 23 8999999999999999999999887621 1356999999999999999999
Q ss_pred CCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 016648 282 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 282 ~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~ 355 (385)
.++..+++ .++.+|++++ +.+++++++..+ +++.+++|++++++..++++++...++.+.+.+.+++
T Consensus 272 ~~~~~~~v---~~~~~G~~~~--~~~e~~~~i~~l--~~~~~~~m~~na~~~a~~~~~~~f~k~~l~~~~~~~~ 338 (339)
T 3rhz_A 272 GIANQELI---ENNGLGWIVK--DVEEAIMKVKNV--NEDEYIELVKNVRSFNPILRKGFFTRRLLTESVFQAI 338 (339)
T ss_dssp TCTTTHHH---HHHTCEEEES--SHHHHHHHHHHC--CHHHHHHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHH
T ss_pred ChhHHHHH---HhCCeEEEeC--CHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 99999999 8889999987 789999999987 4677899999999998888888888877766665554
No 27
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=99.94 E-value=7.2e-26 Score=205.47 Aligned_cols=277 Identities=17% Similarity=0.134 Sum_probs=196.1
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
..++.+++++.+||+||+|+.....+.+.+.++..++|++...++... . . ....+ ......+.+.+.+|.++++
T Consensus 80 ~~~l~~~l~~~~pDvv~~~~~~~~~~~~~~~a~~~~ip~v~~~~~~~~-~-~-~~~~~---~~~~~~~~~~~~~~~~~~~ 153 (376)
T 1v4v_A 80 LPQAARALKEMGADYVLVHGDTLTTFAVAWAAFLEGIPVGHVEAGLRS-G-N-LKEPF---PEEANRRLTDVLTDLDFAP 153 (376)
T ss_dssp HHHHHHHHHHTTCSEEEEESSCHHHHHHHHHHHHTTCCEEEETCCCCC-S-C-TTSST---THHHHHHHHHHHCSEEEES
T ss_pred HHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHHHhCCCEEEEeCCCcc-c-c-ccCCC---chHHHHHHHHHHhceeeCC
Confidence 457888899999999999976555555566778899998754333211 1 0 00001 1112345566789999999
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCC-CCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC---
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--- 207 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--- 207 (385)
|+..++.+.+.+ .+.+++.+++|+. |...+.+. ....+.+ . .+++++++++|++...||++.++++++.+
T Consensus 154 s~~~~~~l~~~g-~~~~ki~vi~n~~~d~~~~~~~--~~~~~~~--~-~~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~ 227 (376)
T 1v4v_A 154 TPLAKANLLKEG-KREEGILVTGQTGVDAVLLAAK--LGRLPEG--L-PEGPYVTVTMHRRENWPLLSDLAQALKRVAEA 227 (376)
T ss_dssp SHHHHHHHHTTT-CCGGGEEECCCHHHHHHHHHHH--HCCCCTT--C-CSSCEEEECCCCGGGGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcC-CCcceEEEECCchHHHHhhhhh--hhHHHHh--c-CCCCEEEEEeCcccchHHHHHHHHHHHHHHhh
Confidence 999999998764 4567899999864 32111000 0000011 1 23455677899987778999999998765
Q ss_pred -CCceEEEE-eCCc-cHHHHHHHHcC-CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe-cC
Q 016648 208 -PEARIAFI-GDGP-YREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV-RA 282 (385)
Q Consensus 208 -~~~~l~i~-G~g~-~~~~l~~~~~~-~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s-~~ 282 (385)
+++++++. |+++ ..+.++++... .+|++.|+++..++..+|+.||++|.|| +..++|||++|+|+|++ +.
T Consensus 228 ~~~~~lv~~~g~~~~~~~~l~~~~~~~~~v~~~g~~g~~~~~~~~~~ad~~v~~S-----~g~~lEA~a~G~PvI~~~~~ 302 (376)
T 1v4v_A 228 FPHLTFVYPVHLNPVVREAVFPVLKGVRNFVLLDPLEYGSMAALMRASLLLVTDS-----GGLQEEGAALGVPVVVLRNV 302 (376)
T ss_dssp CTTSEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHTEEEEEESC-----HHHHHHHHHTTCCEEECSSS
T ss_pred CCCeEEEEECCCCHHHHHHHHHHhccCCCEEEECCCCHHHHHHHHHhCcEEEECC-----cCHHHHHHHcCCCEEeccCC
Confidence 67888885 7665 45667666543 4799999998889999999999999998 33388999999999987 56
Q ss_pred CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 016648 283 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 283 ~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~ 355 (385)
++..+++ .++ +|++++ .|+++++++|.++++|++.+++|++++ ++|++...++++. +++.+++
T Consensus 303 ~~~~~~~---~~g-~g~lv~-~d~~~la~~i~~ll~d~~~~~~~~~~~----~~~~~~~~~~~i~-~~i~~~~ 365 (376)
T 1v4v_A 303 TERPEGL---KAG-ILKLAG-TDPEGVYRVVKGLLENPEELSRMRKAK----NPYGDGKAGLMVA-RGVAWRL 365 (376)
T ss_dssp CSCHHHH---HHT-SEEECC-SCHHHHHHHHHHHHTCHHHHHHHHHSC----CSSCCSCHHHHHH-HHHHHHT
T ss_pred Ccchhhh---cCC-ceEECC-CCHHHHHHHHHHHHhChHhhhhhcccC----CCCCCChHHHHHH-HHHHHHh
Confidence 7888876 444 788885 499999999999999999888888643 4566666677776 4565554
No 28
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.94 E-value=1.7e-26 Score=186.47 Aligned_cols=147 Identities=22% Similarity=0.373 Sum_probs=131.1
Q ss_pred CCCCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHc------CCCeEEecccChHHHHHHHHhCc
Q 016648 179 EPDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT------GMPAVFTGMLLGEELSQAYASGD 252 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~------~~~i~~~g~~~~~~~~~~~~~ad 252 (385)
++++++|+|+|++.+.||++.++++++.+++++++++|.++..+.+++.+. ..+|++.|+++++++..+|+.||
T Consensus 20 ~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~l~i~G~~~~~~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~ad 99 (177)
T 2f9f_A 20 KCYGDFWLSVNRIYPEKRIELQLEVFKKLQDEKLYIVGWFSKGDHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSRCK 99 (177)
T ss_dssp CCCCSCEEEECCSSGGGTHHHHHHHHHHCTTSCEEEEBCCCTTSTHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHHCS
T ss_pred CCCCCEEEEEeccccccCHHHHHHHHHhCCCcEEEEEecCccHHHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHhCC
Confidence 456788999999999999999999999999999999998877666665554 34899999999999999999999
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHH-HHHHHHH
Q 016648 253 VFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQEL-RETMGQA 329 (385)
Q Consensus 253 i~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~-~~~~~~~ 329 (385)
++|+|+..|++|++++|||+||+|||+++.++..+++ .++.+|+++ ++|+++++++|.++++|++. +++++++
T Consensus 100 i~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~e~i---~~~~~g~~~-~~d~~~l~~~i~~l~~~~~~~~~~~~~~ 173 (177)
T 2f9f_A 100 GLLCTAKDEDFGLTPIEAMASGKPVIAVNEGGFKETV---INEKTGYLV-NADVNEIIDAMKKVSKNPDKFKKDCFRR 173 (177)
T ss_dssp EEEECCSSCCSCHHHHHHHHTTCCEEEESSHHHHHHC---CBTTTEEEE-CSCHHHHHHHHHHHHHCTTTTHHHHHHH
T ss_pred EEEeCCCcCCCChHHHHHHHcCCcEEEeCCCCHHHHh---cCCCccEEe-CCCHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 888899999 88999999999999998874 3333333
No 29
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.93 E-value=1.6e-25 Score=202.11 Aligned_cols=244 Identities=14% Similarity=0.094 Sum_probs=178.6
Q ss_pred chHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEE
Q 016648 51 LSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLV 130 (385)
Q Consensus 51 ~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~ 130 (385)
....+.+++++.+||+||++....+.. + +....+ |+++..+.... . .+.+.+++.+|.+++
T Consensus 99 ~~~~l~~~l~~~~pDiv~~~~~~~~~~--~-~~~~~~-p~~~~~~~~~~----~-----------~~~~~~~~~~d~ii~ 159 (374)
T 2xci_A 99 NPFSVKRFEELSKPKALIVVEREFWPS--L-IIFTKV-PKILVNAYAKG----S-----------LIEKILSKKFDLIIM 159 (374)
T ss_dssp SHHHHHHHHHHHCCSEEEEESCCCCHH--H-HHHCCS-CEEEEEECCCC----C-----------HHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHhCCCEEEEECccCcHH--H-HHHHhC-CEEEEEeecCc----h-----------HHHHHHHHhCCEEEE
Confidence 457889999999999999865433221 1 112223 87665443211 0 055677899999999
Q ss_pred cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccccHHHHHHHHHhC---
Q 016648 131 PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRL--- 207 (385)
Q Consensus 131 ~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~--- 207 (385)
.|+..++.+.+.+ .+ ++.+++|+.. .+.... .. .. ..+++++.|+ ..||++.+++|++.+
T Consensus 160 ~S~~~~~~l~~~g-~~--ki~vi~n~~f----~~~~~~---~~----~l-~~~vi~~~~~--~~k~~~~ll~A~~~l~~~ 222 (374)
T 2xci_A 160 RTQEDVEKFKTFG-AK--RVFSCGNLKF----ICQKGK---GI----KL-KGEFIVAGSI--HTGEVEIILKAFKEIKKT 222 (374)
T ss_dssp SCHHHHHHHHTTT-CC--SEEECCCGGG----CCCCCS---CC----CC-SSCEEEEEEE--CGGGHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHcC-CC--eEEEcCCCcc----CCCcCh---hh----hh-cCCEEEEEeC--CCchHHHHHHHHHHHHhh
Confidence 9999999998874 33 8999999731 111110 00 01 1256666664 468999999998765
Q ss_pred -CCceEEEEeCCccH-HHHHHHHcCC------------CeEEecccChHHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHh
Q 016648 208 -PEARIAFIGDGPYR-EELEKMFTGM------------PAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMS 272 (385)
Q Consensus 208 -~~~~l~i~G~g~~~-~~l~~~~~~~------------~i~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a 272 (385)
|+++++|+|+|+.. +.+++++.+. ++.+.|+. +|+..+|+.||++++|+. .+++|.+++|||+
T Consensus 223 ~p~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~--~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA 300 (374)
T 2xci_A 223 YSSLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRF--GILKELYPVGKIAIVGGTFVNIGGHNLLEPTC 300 (374)
T ss_dssp CTTCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSS--SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHT
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCH--HHHHHHHHhCCEEEECCcccCCCCcCHHHHHH
Confidence 68999999998876 4677766543 35666655 899999999999888765 4678899999999
Q ss_pred cCCcEEEe-cCCCCCcccccCCC-CCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHh
Q 016648 273 SGIPVVGV-RAGGIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEK 336 (385)
Q Consensus 273 ~G~PvI~s-~~~~~~e~~~~~~~-~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~ 336 (385)
||+|||++ +.++.++.+ .+ ..+|.++.++|+++|+++|.++++| +.+++|++++++.+++
T Consensus 301 ~G~PVI~~~~~~~~~e~~---~~~~~~G~l~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~~ 362 (374)
T 2xci_A 301 WGIPVIYGPYTHKVNDLK---EFLEKEGAGFEVKNETELVTKLTELLSV-KKEIKVEEKSREIKGC 362 (374)
T ss_dssp TTCCEEECSCCTTSHHHH---HHHHHTTCEEECCSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHHH
T ss_pred hCCCEEECCCccChHHHH---HHHHHCCCEEEeCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 99999975 678888877 43 2467777788999999999999999 9999999999998754
No 30
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=99.89 E-value=1.4e-22 Score=184.20 Aligned_cols=275 Identities=16% Similarity=0.139 Sum_probs=187.1
Q ss_pred ccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeE
Q 016648 49 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLT 128 (385)
Q Consensus 49 ~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~i 128 (385)
.....++.+++++.+||+|++++.....+++.+.++..++|++....+.. . ...+ ..+ ........+.+.+|.+
T Consensus 100 ~~~~~~l~~~l~~~kPD~Vi~~gd~~~~l~~~laA~~~~IPv~h~~aglr-s-~~~~-~~~---p~~~~r~~~~~~a~~~ 173 (403)
T 3ot5_A 100 SRVMNGINEVIAAENPDIVLVHGDTTTSFAAGLATFYQQKMLGHVEAGLR-T-WNKY-SPF---PEEMNRQLTGVMADIH 173 (403)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTCHHHHHHHHHHHHTTCEEEEESCCCC-C-SCTT-SST---THHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCcc-c-cccc-cCC---cHHHHHHHHHHhcCEE
Confidence 34567888999999999999998756666666778889999753222210 0 0000 000 0112334455669999
Q ss_pred EEcChhHHHHHHHhcccCCCcEEEeeCC-CCCCCCCCCC-CChhhHhhhcCCCCCCcEEEEEeeccc-cccHHHHHHHHH
Q 016648 129 LVPSVAIGKDLEAARVTAANKIRIWKKG-VDSESFHPRF-RSSEMRWRLSNGEPDKPLIVHVGRLGV-EKSLDFLKRVMD 205 (385)
Q Consensus 129 i~~s~~~~~~~~~~~~~~~~~i~vi~~~-v~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~G~~~~-~k~~~~l~~a~~ 205 (385)
+++|+..++.+.+.+. +++++.+++|+ +|...+.+.. .....+.++ .+++.++++.|+... .++++.++++++
T Consensus 174 ~~~se~~~~~l~~~Gi-~~~~i~vvGn~~~D~~~~~~~~~~~~~~~~~l---~~~~~vlv~~~r~~~~~~~l~~ll~a~~ 249 (403)
T 3ot5_A 174 FSPTKQAKENLLAEGK-DPATIFVTGNTAIDALKTTVQKDYHHPILENL---GDNRLILMTAHRRENLGEPMQGMFEAVR 249 (403)
T ss_dssp EESSHHHHHHHHHTTC-CGGGEEECCCHHHHHHHHHSCTTCCCHHHHSC---TTCEEEEECCCCHHHHTTHHHHHHHHHH
T ss_pred ECCCHHHHHHHHHcCC-CcccEEEeCCchHHHHHhhhhhhcchHHHHhc---cCCCEEEEEeCcccccCcHHHHHHHHHH
Confidence 9999999999998764 67889999985 3432221111 111222222 233444556666433 467888888886
Q ss_pred hC----CCceEEEE-eCCc-cHHHHHHHHc-CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 206 RL----PEARIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 206 ~~----~~~~l~i~-G~g~-~~~~l~~~~~-~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
.+ +++++++. |.++ ..+.+++... ..++.+.+++++.++..+|+.||++|.+| |...+||+++|+|+|
T Consensus 250 ~l~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~v~l~~~l~~~~~~~l~~~ad~vv~~S-----Gg~~~EA~a~g~PvV 324 (403)
T 3ot5_A 250 EIVESREDTELVYPMHLNPAVREKAMAILGGHERIHLIEPLDAIDFHNFLRKSYLVFTDS-----GGVQEEAPGMGVPVL 324 (403)
T ss_dssp HHHHHCTTEEEEEECCSCHHHHHHHHHHHTTCTTEEEECCCCHHHHHHHHHHEEEEEECC-----HHHHHHGGGTTCCEE
T ss_pred HHHHhCCCceEEEecCCCHHHHHHHHHHhCCCCCEEEeCCCCHHHHHHHHHhcCEEEECC-----ccHHHHHHHhCCCEE
Confidence 54 78888886 4443 3445555333 34799999999899999999999999887 444589999999999
Q ss_pred Ee-cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 279 GV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 279 ~s-~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
++ +.++.++.+ +.| +++++.. |.+++++++.++++|++.+++|++++.. |.....++++.
T Consensus 325 ~~~~~~~~~e~v---~~g-~~~lv~~-d~~~l~~ai~~ll~~~~~~~~m~~~~~~----~g~~~aa~rI~ 385 (403)
T 3ot5_A 325 VLRDTTERPEGI---EAG-TLKLIGT-NKENLIKEALDLLDNKESHDKMAQAANP----YGDGFAANRIL 385 (403)
T ss_dssp ECCSSCSCHHHH---HHT-SEEECCS-CHHHHHHHHHHHHHCHHHHHHHHHSCCT----TCCSCHHHHHH
T ss_pred EecCCCcchhhe---eCC-cEEEcCC-CHHHHHHHHHHHHcCHHHHHHHHhhcCc----ccCCcHHHHHH
Confidence 98 677777777 555 7787765 9999999999999999998888765543 44344444444
No 31
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=99.89 E-value=5.2e-23 Score=186.91 Aligned_cols=277 Identities=16% Similarity=0.105 Sum_probs=186.6
Q ss_pred ccchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHH-HHHhCCe
Q 016648 49 LALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKF-LHRAADL 127 (385)
Q Consensus 49 ~~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ad~ 127 (385)
.....++.+++++.+||+|++++.....+++.+.++..++|++...++.. .+ .+....-....+. +.+.+|.
T Consensus 97 ~~~~~~l~~~l~~~kPDvVi~~g~~~~~~~~~~aa~~~~IPv~h~~ag~r-s~------~~~~~~~~~~~r~~~~~~a~~ 169 (396)
T 3dzc_A 97 SKILLGMQQVLSSEQPDVVLVHGDTATTFAASLAAYYQQIPVGHVEAGLR-TG------NIYSPWPEEGNRKLTAALTQY 169 (396)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEETTSHHHHHHHHHHHTTTCCEEEETCCCC-CS------CTTSSTTHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchhHHHHHHHHHHhCCCEEEEECCcc-cc------ccccCCcHHHHHHHHHHhcCE
Confidence 34567888999999999999998755556666778889999764322211 10 1000010113333 4678999
Q ss_pred EEEcChhHHHHHHHhcccCCCcEEEeeCCC-CCCCCCCCC--CC----hhhHhhhcCCCCCCcE-EEEEeec-cccccHH
Q 016648 128 TLVPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFHPRF--RS----SEMRWRLSNGEPDKPL-IVHVGRL-GVEKSLD 198 (385)
Q Consensus 128 ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v-~~~~~~~~~--~~----~~~~~~~~~~~~~~~~-i~~~G~~-~~~k~~~ 198 (385)
++++|+..++.+.+.+. +++++.+++|++ |...+.+.. .. ...+.++....+++.+ +++.++. ...|+++
T Consensus 170 ~~~~se~~~~~l~~~G~-~~~ki~vvGn~~~d~~~~~~~~~~~~~~~~~~~r~~lg~l~~~~~~vlv~~hR~~~~~~~~~ 248 (396)
T 3dzc_A 170 HFAPTDTSRANLLQENY-NAENIFVTGNTVIDALLAVREKIHTDMDLQATLESQFPMLDASKKLILVTGHRRESFGGGFE 248 (396)
T ss_dssp EEESSHHHHHHHHHTTC-CGGGEEECCCHHHHHHHHHHHHHHHCHHHHHHHHHTCTTCCTTSEEEEEECSCBCCCTTHHH
T ss_pred EECCCHHHHHHHHHcCC-CcCcEEEECCcHHHHHHHhhhhcccchhhHHHHHHHhCccCCCCCEEEEEECCcccchhHHH
Confidence 99999999999988754 667899999854 322111110 00 1122222211133444 4444453 3347889
Q ss_pred HHHHHHHhC----CCceEEEE-eCCc-cHHHHHHHHc-CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHH
Q 016648 199 FLKRVMDRL----PEARIAFI-GDGP-YREELEKMFT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM 271 (385)
Q Consensus 199 ~l~~a~~~~----~~~~l~i~-G~g~-~~~~l~~~~~-~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~ 271 (385)
.++++++.+ +++++++. |.++ ..+.+++... ..++.+.+++.+.++..+|+.||++|.+| | ...+||+
T Consensus 249 ~ll~A~~~l~~~~~~~~~v~~~g~~~~~~~~l~~~~~~~~~v~~~~~lg~~~~~~l~~~ad~vv~~S---G--g~~~EA~ 323 (396)
T 3dzc_A 249 RICQALITTAEQHPECQILYPVHLNPNVREPVNKLLKGVSNIVLIEPQQYLPFVYLMDRAHIILTDS---G--GIQEEAP 323 (396)
T ss_dssp HHHHHHHHHHHHCTTEEEEEECCBCHHHHHHHHHHTTTCTTEEEECCCCHHHHHHHHHHCSEEEESC---S--GGGTTGG
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCChHHHHHHHHHHcCCCCEEEeCCCCHHHHHHHHHhcCEEEECC---c--cHHHHHH
Confidence 999988765 68888875 5543 3455555433 34799999999899999999999999998 2 3348999
Q ss_pred hcCCcEEEe-cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 272 SSGIPVVGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 272 a~G~PvI~s-~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
++|+|+|++ +.++.++.+ +.| .+++++. |++++++++.++++|++.+++|++++.. |.....++++.
T Consensus 324 a~G~PvV~~~~~~~~~e~v---~~G-~~~lv~~-d~~~l~~ai~~ll~d~~~~~~m~~~~~~----~~~~~aa~ri~ 391 (396)
T 3dzc_A 324 SLGKPVLVMRETTERPEAV---AAG-TVKLVGT-NQQQICDALSLLLTDPQAYQAMSQAHNP----YGDGKACQRIA 391 (396)
T ss_dssp GGTCCEEECCSSCSCHHHH---HHT-SEEECTT-CHHHHHHHHHHHHHCHHHHHHHHTSCCT----TCCSCHHHHHH
T ss_pred HcCCCEEEccCCCcchHHH---HcC-ceEEcCC-CHHHHHHHHHHHHcCHHHHHHHhhccCC----CcCChHHHHHH
Confidence 999999998 677777877 556 4566654 8999999999999999999888876543 44444444444
No 32
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=99.85 E-value=2.3e-19 Score=161.33 Aligned_cols=255 Identities=18% Similarity=0.179 Sum_probs=171.9
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
..+..+++++++||+|++++.. ...+..+.++..++|+++.-.+..+. ...+++.+.++.+++.
T Consensus 81 ~~~~~~~l~~~~PDvVi~~g~~-~s~p~~laA~~~~iP~vihe~n~~~G---------------~~nr~l~~~a~~v~~~ 144 (365)
T 3s2u_A 81 LFQALRVIRQLRPVCVLGLGGY-VTGPGGLAARLNGVPLVIHEQNAVAG---------------TANRSLAPIARRVCEA 144 (365)
T ss_dssp HHHHHHHHHHHCCSEEEECSSS-THHHHHHHHHHTTCCEEEEECSSSCC---------------HHHHHHGGGCSEEEES
T ss_pred HHHHHHHHHhcCCCEEEEcCCc-chHHHHHHHHHcCCCEEEEecchhhh---------------hHHHhhccccceeeec
Confidence 3456778999999999998753 34455667889999999743332221 1345677889999887
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCc-EEEEEeeccccccHHHHHHHHHhCC--
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKP-LIVHVGRLGVEKSLDFLKRVMDRLP-- 208 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~G~~~~~k~~~~l~~a~~~~~-- 208 (385)
.+.. + ...+++.+..|++..+.+..... +... .++++ ++++.|+.+..+..+.+.+++..++
T Consensus 145 ~~~~-------~-~~~~k~~~~g~pvr~~~~~~~~~------~~~~-~~~~~~ilv~gGs~g~~~~~~~~~~al~~l~~~ 209 (365)
T 3s2u_A 145 FPDT-------F-PASDKRLTTGNPVRGELFLDAHA------RAPL-TGRRVNLLVLGGSLGAEPLNKLLPEALAQVPLE 209 (365)
T ss_dssp STTS-------S-CC---CEECCCCCCGGGCCCTTS------SCCC-TTSCCEEEECCTTTTCSHHHHHHHHHHHTSCTT
T ss_pred cccc-------c-cCcCcEEEECCCCchhhccchhh------hccc-CCCCcEEEEECCcCCccccchhhHHHHHhcccc
Confidence 6542 2 23457778888887665433221 1111 23344 4556677888788888899998874
Q ss_pred -CceEEE-EeCCccHHHHHHHHc--CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC
Q 016648 209 -EARIAF-IGDGPYREELEKMFT--GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 209 -~~~l~i-~G~g~~~~~l~~~~~--~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~ 284 (385)
+..++. +|.+ ..+.+.+... ..++.+.+++ +++.++|+.||++|.-+ .++++.|++++|+|+|..+.+.
T Consensus 210 ~~~~vi~~~G~~-~~~~~~~~~~~~~~~~~v~~f~--~dm~~~l~~aDlvI~ra----G~~Tv~E~~a~G~P~Ilip~p~ 282 (365)
T 3s2u_A 210 IRPAIRHQAGRQ-HAEITAERYRTVAVEADVAPFI--SDMAAAYAWADLVICRA----GALTVSELTAAGLPAFLVPLPH 282 (365)
T ss_dssp TCCEEEEECCTT-THHHHHHHHHHTTCCCEEESCC--SCHHHHHHHCSEEEECC----CHHHHHHHHHHTCCEEECC---
T ss_pred cceEEEEecCcc-ccccccceecccccccccccch--hhhhhhhccceEEEecC----CcchHHHHHHhCCCeEEeccCC
Confidence 344444 4444 3344444433 3378899999 89999999999999543 3789999999999999877653
Q ss_pred C--------CcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 285 I--------PDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 285 ~--------~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
. .+.+ .+...|.+++.. ++++|+++|.++++|++.+++|++++++.......+.+++.++
T Consensus 283 ~~~~~Q~~NA~~l---~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~~~~aa~~ia~~i~ 352 (365)
T 3s2u_A 283 AIDDHQTRNAEFL---VRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLAKPEATRTVVDACL 352 (365)
T ss_dssp --CCHHHHHHHHH---HTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH---HHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence 2 1334 455567777644 5899999999999999999999999987765555555555554
No 33
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=99.83 E-value=7.2e-20 Score=168.00 Aligned_cols=266 Identities=11% Similarity=0.051 Sum_probs=175.4
Q ss_pred HHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHH----------
Q 016648 53 PRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLH---------- 122 (385)
Q Consensus 53 ~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 122 (385)
.++.+.+++++||+|+++..... +..+++..|+|+|.+.|+..... . ........+.+...
T Consensus 120 ~~l~~~l~~~~pDvVv~~~~~~~---~~~aa~~~giP~v~~~~~~~~~~--~----~~~~~~~~~~~~~~~~g~~~~~~~ 190 (412)
T 3otg_A 120 DELQPVIERLRPDLVVQEISNYG---AGLAALKAGIPTICHGVGRDTPD--D----LTRSIEEEVRGLAQRLGLDLPPGR 190 (412)
T ss_dssp HHHHHHHHHHCCSEEEEETTCHH---HHHHHHHHTCCEEEECCSCCCCS--H----HHHHHHHHHHHHHHHTTCCCCSSC
T ss_pred HHHHHHHHhcCCCEEEECchhhH---HHHHHHHcCCCEEEecccccCch--h----hhHHHHHHHHHHHHHcCCCCCccc
Confidence 67888999999999999854322 44567889999999877753211 0 01111111222222
Q ss_pred --HhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhh--cCCCCCCcEEEEEeeccccccHH
Q 016648 123 --RAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRL--SNGEPDKPLIVHVGRLGVEKSLD 198 (385)
Q Consensus 123 --~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~G~~~~~k~~~ 198 (385)
..+|.+++.++...+........ ....+.+.+.+. .... .+. ....+.+.++++.|+.. .++.+
T Consensus 191 ~~~~~d~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~vlv~~G~~~-~~~~~ 258 (412)
T 3otg_A 191 IDGFGNPFIDIFPPSLQEPEFRARP--RRHELRPVPFAE-----QGDL----PAWLSSRDTARPLVYLTLGTSS-GGTVE 258 (412)
T ss_dssp CGGGGCCEEECSCGGGSCHHHHTCT--TEEECCCCCCCC-----CCCC----CGGGGGSCTTSCEEEEECTTTT-CSCHH
T ss_pred ccCCCCeEEeeCCHHhcCCcccCCC--CcceeeccCCCC-----CCCC----CCccccccCCCCEEEEEcCCCC-cCcHH
Confidence 36788999888766655443221 111111111110 0000 011 11233456678888885 55555
Q ss_pred HHHHHHHhC--CCceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCC
Q 016648 199 FLKRVMDRL--PEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGI 275 (385)
Q Consensus 199 ~l~~a~~~~--~~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~ 275 (385)
.+.++++.+ .+.++++++.+.. .+.++.. ..++.+.|++ ++.++|+.||++|.++ .+++++|||++|+
T Consensus 259 ~~~~~~~~l~~~~~~~~~~~g~~~~~~~l~~~--~~~v~~~~~~---~~~~~l~~ad~~v~~~----g~~t~~Ea~a~G~ 329 (412)
T 3otg_A 259 VLRAAIDGLAGLDADVLVASGPSLDVSGLGEV--PANVRLESWV---PQAALLPHVDLVVHHG----GSGTTLGALGAGV 329 (412)
T ss_dssp HHHHHHHHHHTSSSEEEEECCSSCCCTTCCCC--CTTEEEESCC---CHHHHGGGCSEEEESC----CHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCEEEEEECCCCChhhhccC--CCcEEEeCCC---CHHHHHhcCcEEEECC----chHHHHHHHHhCC
Confidence 555444433 2567776654432 3333321 3479999998 4888999999999765 3589999999999
Q ss_pred cEEEecCCC----CCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 016648 276 PVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIRNE 349 (385)
Q Consensus 276 PvI~s~~~~----~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~ 349 (385)
|+|+.+.++ ..+.+ .+..+|.+++++ |+++++++|.++++|++.++++++.+++..+.++++++++.+. +
T Consensus 330 P~v~~p~~~~q~~~~~~v---~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 405 (412)
T 3otg_A 330 PQLSFPWAGDSFANAQAV---AQAGAGDHLLPDNISPDSVSGAAKRLLAEESYRAGARAVAAEIAAMPGPDEVVRLLP-G 405 (412)
T ss_dssp CEEECCCSTTHHHHHHHH---HHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHSCCHHHHHTTHH-H
T ss_pred CEEecCCchhHHHHHHHH---HHcCCEEecCcccCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-H
Confidence 999976654 45666 567789999877 8999999999999999999999999999888899999999886 5
Q ss_pred HHH
Q 016648 350 QYN 352 (385)
Q Consensus 350 iy~ 352 (385)
++.
T Consensus 406 l~~ 408 (412)
T 3otg_A 406 FAS 408 (412)
T ss_dssp HHC
T ss_pred Hhc
Confidence 654
No 34
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=99.80 E-value=1.2e-18 Score=160.75 Aligned_cols=277 Identities=14% Similarity=0.056 Sum_probs=172.9
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcc-ccccc-c---------cccchhHHHHHHH
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVY-IPRYT-F---------SWLVKPMWLVIKF 120 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~-~~~~~-~---------~~~~~~~~~~~~~ 120 (385)
...+.+.+++.+||+|+++.... .+..+++..|+|++...+...... ..... . .........+.+.
T Consensus 93 ~~~l~~~l~~~~pD~Vi~d~~~~---~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (430)
T 2iyf_A 93 LPQLADAYADDIPDLVLHDITSY---PARVLARRWGVPAVSLSPNLVAWKGYEEEVAEPMWREPRQTERGRAYYARFEAW 169 (430)
T ss_dssp HHHHHHHHTTSCCSEEEEETTCH---HHHHHHHHHTCCEEEEESSCCCCTTHHHHTHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccCCCEEEECCccH---HHHHHHHHcCCCEEEEecccccccccccccccchhhhhccchHHHHHHHHHHHH
Confidence 45677788889999999876422 345567788999998776543111 00000 0 0000000111121
Q ss_pred ------------HHHhCCeEEEcChhHHHHHHHhcccCCCc-EEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEE
Q 016648 121 ------------LHRAADLTLVPSVAIGKDLEAARVTAANK-IRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVH 187 (385)
Q Consensus 121 ------------~~~~ad~ii~~s~~~~~~~~~~~~~~~~~-i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (385)
....+|.+++.+....+..... .+ .+ +..+.++++......... ....++..++++
T Consensus 170 ~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~-~~~v~~vG~~~~~~~~~~~~~--------~~~~~~~~v~v~ 238 (430)
T 2iyf_A 170 LKENGITEHPDTFASHPPRSLVLIPKALQPHADR--VD-EDVYTFVGACQGDRAEEGGWQ--------RPAGAEKVVLVS 238 (430)
T ss_dssp HHHTTCCSCHHHHHHCCSSEEECSCGGGSTTGGG--SC-TTTEEECCCCC-----CCCCC--------CCTTCSEEEEEE
T ss_pred HHHhCCCCCHHHHhcCCCcEEEeCcHHhCCCccc--CC-CccEEEeCCcCCCCCCCCCCc--------cccCCCCeEEEE
Confidence 2224788888876554332211 12 24 666666554221000000 001234567888
Q ss_pred Eeecccccc---HHHHHHHHHhCCCceE-EEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCC
Q 016648 188 VGRLGVEKS---LDFLKRVMDRLPEARI-AFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETL 263 (385)
Q Consensus 188 ~G~~~~~k~---~~~l~~a~~~~~~~~l-~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~ 263 (385)
+|++. .++ +..++++++.++++++ +++|++...+.++. ...++.+.|++++. ++|+.||++|..+ .
T Consensus 239 ~Gs~~-~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~~~~l~~--~~~~v~~~~~~~~~---~~l~~ad~~v~~~----G 308 (430)
T 2iyf_A 239 LGSAF-TKQPAFYRECVRAFGNLPGWHLVLQIGRKVTPAELGE--LPDNVEVHDWVPQL---AILRQADLFVTHA----G 308 (430)
T ss_dssp CTTTC-C-CHHHHHHHHHHHTTCTTEEEEEECC---CGGGGCS--CCTTEEEESSCCHH---HHHTTCSEEEECC----C
T ss_pred cCCCC-CCcHHHHHHHHHHHhcCCCeEEEEEeCCCCChHHhcc--CCCCeEEEecCCHH---HHhhccCEEEECC----C
Confidence 99987 333 5556666665556777 46787765444432 13479999999754 6899999999754 3
Q ss_pred cHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhC
Q 016648 264 GLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKY 337 (385)
Q Consensus 264 ~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~ 337 (385)
.++++|||++|+|+|+++.++ ..+.+ .+...|+.++.+ |+++++++|.++++|++.++++++.+++..+.+
T Consensus 309 ~~t~~Ea~~~G~P~i~~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~ 385 (430)
T 2iyf_A 309 AGGSQEGLATATPMIAVPQAVDQFGNADML---QGLGVARKLATEEATADLLRETALALVDDPEVARRLRRIQAEMAQEG 385 (430)
T ss_dssp HHHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHTTSEEECCCC-CCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHhCCCEEECCCccchHHHHHHH---HHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcC
Confidence 579999999999999997654 34455 456788888876 899999999999999999999999988887778
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 016648 338 DWRAATRTIRNEQYNAAIW 356 (385)
Q Consensus 338 s~~~~~~~~~~~iy~~~~~ 356 (385)
+++.+++.+. .++++...
T Consensus 386 ~~~~~~~~i~-~~~~~~~~ 403 (430)
T 2iyf_A 386 GTRRAADLIE-AELPARHE 403 (430)
T ss_dssp HHHHHHHHHH-TTSCC---
T ss_pred cHHHHHHHHH-HHhhcccc
Confidence 9999998886 57765543
No 35
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=99.78 E-value=6.3e-19 Score=158.74 Aligned_cols=276 Identities=14% Similarity=0.120 Sum_probs=178.3
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEE
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTL 129 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii 129 (385)
....++.+++++++||+|++++.....++ .+.++..++|++....+... ....+ .-......+-+.+|.++
T Consensus 81 ~~~~~l~~~l~~~kPD~Vlv~gd~~~~~a-alaA~~~~IPv~h~eaglrs-----~~~~~---pee~nR~~~~~~a~~~~ 151 (385)
T 4hwg_A 81 LVIEKVDEVLEKEKPDAVLFYGDTNSCLS-AIAAKRRKIPIFHMEAGNRC-----FDQRV---PEEINRKIIDHISDVNI 151 (385)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESCSGGGGG-HHHHHHTTCCEEEESCCCCC-----SCTTS---THHHHHHHHHHHCSEEE
T ss_pred HHHHHHHHHHHhcCCcEEEEECCchHHHH-HHHHHHhCCCEEEEeCCCcc-----ccccC---cHHHHHHHHHhhhceee
Confidence 45678889999999999999986444444 56778899997543222211 00000 11112334456789999
Q ss_pred EcChhHHHHHHHhcccCCCcEEEeeCCC-CCCCCC-CCCCChhhHhhhcCCCCCCcEEEEEeec---cccccHHHHHHHH
Q 016648 130 VPSVAIGKDLEAARVTAANKIRIWKKGV-DSESFH-PRFRSSEMRWRLSNGEPDKPLIVHVGRL---GVEKSLDFLKRVM 204 (385)
Q Consensus 130 ~~s~~~~~~~~~~~~~~~~~i~vi~~~v-~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~G~~---~~~k~~~~l~~a~ 204 (385)
++++..++.+.+.+. +++++.+++|.. |...+. +.......+.++.. .+++.+++..|+. +..++++.+++++
T Consensus 152 ~~te~~~~~l~~~G~-~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl-~~~~~iLvt~hr~e~~~~~~~l~~ll~al 229 (385)
T 4hwg_A 152 TLTEHARRYLIAEGL-PAELTFKSGSHMPEVLDRFMPKILKSDILDKLSL-TPKQYFLISSHREENVDVKNNLKELLNSL 229 (385)
T ss_dssp ESSHHHHHHHHHTTC-CGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTC-CTTSEEEEEECCC-----CHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCC-CcCcEEEECCchHHHHHHhhhhcchhHHHHHcCC-CcCCEEEEEeCCchhcCcHHHHHHHHHHH
Confidence 999999999988764 667899999854 322111 00011122333332 2244455556654 3347788999998
Q ss_pred HhCC---CceEEEEeCCccHHHHHHH---Hc-CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcE
Q 016648 205 DRLP---EARIAFIGDGPYREELEKM---FT-GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 277 (385)
Q Consensus 205 ~~~~---~~~l~i~G~g~~~~~l~~~---~~-~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 277 (385)
.++. ++.+++.......+.+++. .. ..++.+.+++++.++..+|+.||+++.+| |....||+++|+|+
T Consensus 230 ~~l~~~~~~~vv~p~~p~~~~~l~~~~~~~~~~~~v~l~~~lg~~~~~~l~~~adlvvt~S-----Ggv~~EA~alG~Pv 304 (385)
T 4hwg_A 230 QMLIKEYNFLIIFSTHPRTKKRLEDLEGFKELGDKIRFLPAFSFTDYVKLQMNAFCILSDS-----GTITEEASILNLPA 304 (385)
T ss_dssp HHHHHHHCCEEEEEECHHHHHHHHTSGGGGGTGGGEEECCCCCHHHHHHHHHHCSEEEECC-----TTHHHHHHHTTCCE
T ss_pred HHHHhcCCeEEEEECChHHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhCcEEEECC-----ccHHHHHHHcCCCE
Confidence 7762 5776665443333444443 22 23799999998889999999999999776 44679999999999
Q ss_pred EEecCCC-CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHH-HHhCCHHHHHHHH
Q 016648 278 VGVRAGG-IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQE-MEKYDWRAATRTI 346 (385)
Q Consensus 278 I~s~~~~-~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~-~~~~s~~~~~~~~ 346 (385)
|+..... .+|.+ +.| ++.++.. |.+++++++.++++|++.++.|++++..+ ....+-+++++.+
T Consensus 305 v~~~~~ter~e~v---~~G-~~~lv~~-d~~~i~~ai~~ll~d~~~~~~m~~~~~~~~g~g~aa~rI~~~l 370 (385)
T 4hwg_A 305 LNIREAHERPEGM---DAG-TLIMSGF-KAERVLQAVKTITEEHDNNKRTQGLVPDYNEAGLVSKKILRIV 370 (385)
T ss_dssp EECSSSCSCTHHH---HHT-CCEECCS-SHHHHHHHHHHHHTTCBTTBCCSCCCHHHHTCCCHHHHHHHHH
T ss_pred EEcCCCccchhhh---hcC-ceEEcCC-CHHHHHHHHHHHHhChHHHHHhhccCCCCCCCChHHHHHHHHH
Confidence 9875533 45666 444 5566643 89999999999999987776665555444 3334444444444
No 36
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=99.75 E-value=1.3e-17 Score=152.30 Aligned_cols=155 Identities=15% Similarity=0.110 Sum_probs=110.7
Q ss_pred CCCcEEEEEeeccc----------cccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH
Q 016648 180 PDKPLIVHVGRLGV----------EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA 249 (385)
Q Consensus 180 ~~~~~i~~~G~~~~----------~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~ 249 (385)
+.+.+++++|++.. .+.+..+++++..+ +.++++++++...+.+..+ ..++++.|+++ +.++|.
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~l~~~--~~~v~~~~~~~---~~~ll~ 299 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-GFEVVVAVSDKLAQTLQPL--PEGVLAAGQFP---LSAIMP 299 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG-TCEEEECCCC--------C--CTTEEEESCCC---HHHHGG
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-CCEEEEEeCCcchhhhccC--CCcEEEeCcCC---HHHHHh
Confidence 45567888899854 44578888888776 6888888877654444432 45899999984 667799
Q ss_pred hCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecC----CCCCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHH
Q 016648 250 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA----GGIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELR 323 (385)
Q Consensus 250 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~----~~~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~ 323 (385)
.||++|. .+.+++++|||++|+|+|+.+. .+..+.+ .+...|.+++.+ |++++++++.++++|++.+
T Consensus 300 ~ad~~v~----~gG~~t~~Ea~~~G~P~v~~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 372 (398)
T 4fzr_A 300 ACDVVVH----HGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLL---HAAGAGVEVPWEQAGVESVLAACARIRDDSSYV 372 (398)
T ss_dssp GCSEEEE----CCCHHHHHHHHHTTCCEEECCCSGGGHHHHHHH---HHTTSEEECC-------CHHHHHHHHHHCTHHH
T ss_pred hCCEEEe----cCCHHHHHHHHHhCCCEEecCCchhHHHHHHHH---HHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 9999994 4457899999999999999544 3555666 667789998876 7899999999999999999
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 324 ETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 324 ~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
+++++.+++..+..+++.+++.+.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~ 396 (398)
T 4fzr_A 373 GNARRLAAEMATLPTPADIVRLIE 396 (398)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHh
Confidence 999999988888899999888763
No 37
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=99.72 E-value=5.6e-16 Score=141.52 Aligned_cols=274 Identities=13% Similarity=0.074 Sum_probs=169.0
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccc---------c-cc-ccchhHHHHHHH
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRY---------T-FS-WLVKPMWLVIKF 120 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~---------~-~~-~~~~~~~~~~~~ 120 (385)
...+.+.+++.+||+|+++++ ....+..+++..|+|++...++......... . .. ........+.+.
T Consensus 91 ~~~l~~~l~~~~pD~Vi~d~~--~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (402)
T 3ia7_A 91 LRAAEEALGDNPPDLVVYDVF--PFIAGRLLAARWDRPAVRLTGGFAANEHYSLFKELWKSNGQRHPADVEAVHSVLVDL 168 (402)
T ss_dssp HHHHHHHHTTCCCSEEEEEST--THHHHHHHHHHHTCCEEEEESSCCCBTTBCHHHHHHHHHTCCCGGGSHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEECch--HHHHHHHHHHhhCCCEEEEecccccCccccccccccccccccChhhHHHHHHHHHHH
Confidence 456778888999999999742 2233455678899999988766543211000 0 00 000001111111
Q ss_pred H------------HHhC-CeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEE
Q 016648 121 L------------HRAA-DLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVH 187 (385)
Q Consensus 121 ~------------~~~a-d~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (385)
. .... |..++......+...... ..++.++...+......+... ....+.+.++++
T Consensus 169 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~vGp~~~~~~~~~~~~--------~~~~~~~~v~v~ 237 (402)
T 3ia7_A 169 LGKYGVDTPVKEYWDEIEGLTIVFLPKSFQPFAETF---DERFAFVGPTLTGRDGQPGWQ--------PPRPDAPVLLVS 237 (402)
T ss_dssp HHTTTCCSCHHHHHTCCCSCEEESSCGGGSTTGGGC---CTTEEECCCCCCC----CCCC--------CSSTTCCEEEEE
T ss_pred HHHcCCCCChhhhhcCCCCeEEEEcChHhCCccccC---CCCeEEeCCCCCCcccCCCCc--------ccCCCCCEEEEE
Confidence 1 1111 555555544433322221 234555543322110000000 001334567888
Q ss_pred Eeeccccc--cHHHHHHHHHhCCCceEEE-EeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCc
Q 016648 188 VGRLGVEK--SLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 264 (385)
Q Consensus 188 ~G~~~~~k--~~~~l~~a~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~ 264 (385)
.|+....+ .+..++++++..+ .++++ +|.+...+.+.. ...++++.|++++. ++|+.||++|..+ ..
T Consensus 238 ~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~--~~~~v~~~~~~~~~---~ll~~ad~~v~~~----G~ 307 (402)
T 3ia7_A 238 LGNQFNEHPEFFRACAQAFADTP-WHVVMAIGGFLDPAVLGP--LPPNVEAHQWIPFH---SVLAHARACLTHG----TT 307 (402)
T ss_dssp CCSCSSCCHHHHHHHHHHHTTSS-CEEEEECCTTSCGGGGCS--CCTTEEEESCCCHH---HHHTTEEEEEECC----CH
T ss_pred CCCCCcchHHHHHHHHHHHhcCC-cEEEEEeCCcCChhhhCC--CCCcEEEecCCCHH---HHHhhCCEEEECC----CH
Confidence 89886655 4667777777765 55555 666544443332 23489999999655 8899999999654 35
Q ss_pred HHHHHHHhcCCcEEEecC-----CCCCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhC
Q 016648 265 LVVLEAMSSGIPVVGVRA-----GGIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKY 337 (385)
Q Consensus 265 ~~~~Ea~a~G~PvI~s~~-----~~~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~ 337 (385)
++++||+++|+|+|+... ....+.+ .+...|..+..+ +++++++++.++++|++.++++++.+++..+..
T Consensus 308 ~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~ 384 (402)
T 3ia7_A 308 GAVLEAFAAGVPLVLVPHFATEAAPSAERV---IELGLGSVLRPDQLEPASIREAVERLAADSAVRERVRRMQRDILSSG 384 (402)
T ss_dssp HHHHHHHHTTCCEEECGGGCGGGHHHHHHH---HHTTSEEECCGGGCSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhCCCEEEeCCCcccHHHHHHHH---HHcCCEEEccCCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhCC
Confidence 789999999999997654 2445555 566788888766 899999999999999999999988888777778
Q ss_pred CHHHHHHHHHHHHHH
Q 016648 338 DWRAATRTIRNEQYN 352 (385)
Q Consensus 338 s~~~~~~~~~~~iy~ 352 (385)
+.+..++.+. .+++
T Consensus 385 ~~~~~~~~i~-~~~~ 398 (402)
T 3ia7_A 385 GPARAADEVE-AYLG 398 (402)
T ss_dssp HHHHHHHHHH-HHHH
T ss_pred hHHHHHHHHH-HHHh
Confidence 8888888775 4543
No 38
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=99.70 E-value=6.9e-17 Score=147.05 Aligned_cols=262 Identities=12% Similarity=0.097 Sum_probs=163.4
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHh-------
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA------- 124 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 124 (385)
...+.+++++.+||+||++.. .+.+...++..|+|++...|+...... . .......++.+...+.
T Consensus 103 ~~~l~~~l~~~~PD~Vv~~~~---~~~~~~aa~~~giP~v~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~ 174 (391)
T 3tsa_A 103 LPEYLRLAEAWRPSVLLVDVC---ALIGRVLGGLLDLPVVLHRWGVDPTAG--P---FSDRAHELLDPVCRHHGLTGLPT 174 (391)
T ss_dssp HHHHHHHHHHHCCSEEEEETT---CHHHHHHHHHTTCCEEEECCSCCCTTT--H---HHHHHHHHHHHHHHHTTSSSSCC
T ss_pred HHHHHHHHHhcCCCEEEeCcc---hhHHHHHHHHhCCCEEEEecCCccccc--c---ccchHHHHHHHHHHHcCCCCCCC
Confidence 557788899999999999753 233445678899999987776532111 0 0001111111111111
Q ss_pred CCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccccc-c----HHH
Q 016648 125 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEK-S----LDF 199 (385)
Q Consensus 125 ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k-~----~~~ 199 (385)
.+.++.......+...... ...+..+| ...............+.+.++++.|+....+ + +..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~---~~~~~~~p----------~~~~~~~~~~~~~~~~~~~vlv~~G~~~~~~~~~~~~~~~ 241 (391)
T 3tsa_A 175 PELILDPCPPSLQASDAPQ---GAPVQYVP----------YNGSGAFPAWGAARTSARRVCICMGRMVLNATGPAPLLRA 241 (391)
T ss_dssp CSEEEECSCGGGSCTTSCC---CEECCCCC----------CCCCEECCGGGSSCCSSEEEEEECCHHHHHHHCSHHHHHH
T ss_pred CceEEEecChhhcCCCCCc---cCCeeeec----------CCCCcCCCchhhcCCCCCEEEEEcCCCCCcccchHHHHHH
Confidence 1444544433221111000 00111111 0000000000111123445677778885432 2 556
Q ss_pred HHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 200 LKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 200 l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
++++ +.+|++++++.|++...+.+... ..++++.|+++..++ +..||++|. .+.+++++|||++|+|+|+
T Consensus 242 ~~~~-~~~p~~~~v~~~~~~~~~~l~~~--~~~v~~~~~~~~~~l---l~~ad~~v~----~~G~~t~~Ea~~~G~P~v~ 311 (391)
T 3tsa_A 242 VAAA-TELPGVEAVIAVPPEHRALLTDL--PDNARIAESVPLNLF---LRTCELVIC----AGGSGTAFTATRLGIPQLV 311 (391)
T ss_dssp HHHH-HTSTTEEEEEECCGGGGGGCTTC--CTTEEECCSCCGGGT---GGGCSEEEE----CCCHHHHHHHHHTTCCEEE
T ss_pred HHHh-ccCCCeEEEEEECCcchhhcccC--CCCEEEeccCCHHHH---HhhCCEEEe----CCCHHHHHHHHHhCCCEEe
Confidence 6677 77788999999877654443321 348999999976554 699999995 3456799999999999999
Q ss_pred ecC----CCCCcccccCCCCCeeEeeCC----CCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 280 VRA----GGIPDIIPEDQDGKIGYLFNP----GDLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 280 s~~----~~~~e~~~~~~~~~~g~~~~~----~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
... ....+.+ .+...|..+++ .|++++++++.++++|++.++++++.+++..+..+++.+++.+.
T Consensus 312 ~p~~~~q~~~a~~~---~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 384 (391)
T 3tsa_A 312 LPQYFDQFDYARNL---AAAGAGICLPDEQAQSDHEQFTDSIATVLGDTGFAAAAIKLSDEITAMPHPAALVRTLE 384 (391)
T ss_dssp CCCSTTHHHHHHHH---HHTTSEEECCSHHHHTCHHHHHHHHHHHHTCTHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred cCCcccHHHHHHHH---HHcCCEEecCcccccCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 654 2344556 56778999887 68999999999999999999999998888888899998888775
No 39
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=99.69 E-value=1.5e-15 Score=139.26 Aligned_cols=274 Identities=12% Similarity=0.029 Sum_probs=164.5
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccc---------c-cc-ccchhHHHHHHH
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRY---------T-FS-WLVKPMWLVIKF 120 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~---------~-~~-~~~~~~~~~~~~ 120 (385)
...+.+.+++.+||+|+++++ ..+.+..+++..|+|++...++......... . .. ........+.+.
T Consensus 107 ~~~l~~~l~~~~PDlVi~d~~--~~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 184 (415)
T 3rsc_A 107 LRATAEALDGDVPDLVLYDDF--PFIAGQLLAARWRRPAVRLSAAFASNEHYSFSQDMVTLAGTIDPLDLPVFRDTLRDL 184 (415)
T ss_dssp HHHHHHHHSSSCCSEEEEEST--THHHHHHHHHHTTCCEEEEESSCCCCSSCCHHHHHHHHHTCCCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEECch--hhhHHHHHHHHhCCCEEEEEecccccCccccccccccccccCChhhHHHHHHHHHHH
Confidence 456778888999999998633 2233455678899999998876542211000 0 00 000001111111
Q ss_pred HHHh-------------CCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEE
Q 016648 121 LHRA-------------ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVH 187 (385)
Q Consensus 121 ~~~~-------------ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 187 (385)
.... +|..++......+...... ..++..+...+......+. -.....+.+.++++
T Consensus 185 ~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~vGp~~~~~~~~~~--------~~~~~~~~~~v~v~ 253 (415)
T 3rsc_A 185 LAEHGLSRSVVDCWNHVEQLNLVFVPKAFQIAGDTF---DDRFVFVGPCFDDRRFLGE--------WTRPADDLPVVLVS 253 (415)
T ss_dssp HHHTTCCCCHHHHHTCCCSEEEESSCTTTSTTGGGC---CTTEEECCCCCCCCGGGCC--------CCCCSSCCCEEEEE
T ss_pred HHHcCCCCChhhhhcCCCCeEEEEcCcccCCCcccC---CCceEEeCCCCCCcccCcC--------ccccCCCCCEEEEE
Confidence 1111 1555554443332222111 2234443222211000000 00011234566778
Q ss_pred Eeeccccc--cHHHHHHHHHhCCCceEEE-EeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCc
Q 016648 188 VGRLGVEK--SLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLG 264 (385)
Q Consensus 188 ~G~~~~~k--~~~~l~~a~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~ 264 (385)
.|+..... .+..++++++.++ +++++ +|.+...+.++.+ ..++.+.+++++. ++|..||++|..+ ..
T Consensus 254 ~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~~~~l~~~--~~~v~~~~~~~~~---~ll~~ad~~v~~~----G~ 323 (415)
T 3rsc_A 254 LGTTFNDRPGFFRDCARAFDGQP-WHVVMTLGGQVDPAALGDL--PPNVEAHRWVPHV---KVLEQATVCVTHG----GM 323 (415)
T ss_dssp CTTTSCCCHHHHHHHHHHHTTSS-CEEEEECTTTSCGGGGCCC--CTTEEEESCCCHH---HHHHHEEEEEESC----CH
T ss_pred CCCCCCChHHHHHHHHHHHhcCC-cEEEEEeCCCCChHHhcCC--CCcEEEEecCCHH---HHHhhCCEEEECC----cH
Confidence 88875443 3667777777766 77776 5655444433321 3489999999755 7799999999654 35
Q ss_pred HHHHHHHhcCCcEEEecC----CCCCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCC
Q 016648 265 LVVLEAMSSGIPVVGVRA----GGIPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYD 338 (385)
Q Consensus 265 ~~~~Ea~a~G~PvI~s~~----~~~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s 338 (385)
.+++||+++|+|+|+... ....+.+ .+...|..+..+ +++++++++.++++|++.++++++.+++..+..+
T Consensus 324 ~t~~Ea~~~G~P~v~~p~~~~q~~~a~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~ 400 (415)
T 3rsc_A 324 GTLMEALYWGRPLVVVPQSFDVQPMARRV---DQLGLGAVLPGEKADGDTLLAAVGAVAADPALLARVEAMRGHVRRAGG 400 (415)
T ss_dssp HHHHHHHHTTCCEEECCCSGGGHHHHHHH---HHHTCEEECCGGGCCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHhCCCEEEeCCcchHHHHHHHH---HHcCCEEEcccCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCH
Confidence 789999999999998543 2344555 455678777765 8999999999999999999999888888777788
Q ss_pred HHHHHHHHHHHHHH
Q 016648 339 WRAATRTIRNEQYN 352 (385)
Q Consensus 339 ~~~~~~~~~~~iy~ 352 (385)
.+.+++.+. .+++
T Consensus 401 ~~~~~~~i~-~~~~ 413 (415)
T 3rsc_A 401 AARAADAVE-AYLA 413 (415)
T ss_dssp HHHHHHHHH-HHHH
T ss_pred HHHHHHHHH-HHhh
Confidence 888888775 4443
No 40
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=99.67 E-value=2.2e-15 Score=136.78 Aligned_cols=260 Identities=15% Similarity=0.107 Sum_probs=160.3
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHh-------
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA------- 124 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 124 (385)
..++.+.+++.+||+|+++.... .+..+++..|+|++...|+... ... ..........+...+.
T Consensus 96 ~~~l~~~l~~~~pD~Vi~~~~~~---~~~~~a~~~giP~v~~~~~~~~--~~~----~~~~~~~~~~~~~~~~g~~~~~~ 166 (384)
T 2p6p_A 96 LPRMLDFSRAWRPDLIVGGTMSY---VAPLLALHLGVPHARQTWDAVD--ADG----IHPGADAELRPELSELGLERLPA 166 (384)
T ss_dssp HHHHHHHHHHHCCSEEEEETTCT---HHHHHHHHHTCCEEEECCSSCC--CTT----THHHHHHHTHHHHHHTTCSSCCC
T ss_pred HHHHHHHHhccCCcEEEECcchh---hHHHHHHhcCCCEEEeccCCcc--cch----hhHHHHHHHHHHHHHcCCCCCCC
Confidence 44566778889999999986422 2445677889999987665321 100 0000001111111111
Q ss_pred CCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeecccc-------ccH
Q 016648 125 ADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE-------KSL 197 (385)
Q Consensus 125 ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~-------k~~ 197 (385)
++.+++.+....+.... .+..++..++ .+ ......+. .....+...+++++|++... +.+
T Consensus 167 ~~~~l~~~~~~~~~~~~---~~~~~~~~~~--~~-----~~~~~~~~---l~~~~~~~~v~v~~Gs~~~~~~~~~~~~~~ 233 (384)
T 2p6p_A 167 PDLFIDICPPSLRPANA---APARMMRHVA--TS-----RQCPLEPW---MYTRDTRQRVLVTSGSRVAKESYDRNFDFL 233 (384)
T ss_dssp CSEEEECSCGGGSCTTS---CCCEECCCCC--CC-----CCCBCCHH---HHCCCSSCEEEEECSSSSSCCSSCCCCTTH
T ss_pred CCeEEEECCHHHCCCCC---CCCCceEecC--CC-----CCCCCCch---hhcCCCCCEEEEECCCCCccccccccHHHH
Confidence 56677666543221100 0111111111 10 00000110 11112345678899998764 678
Q ss_pred HHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcE
Q 016648 198 DFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPV 277 (385)
Q Consensus 198 ~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~Pv 277 (385)
..+++++... ++++++++++...+.++.. ..++.+ |+++. .++|..||++|.. +.+++++|||++|+|+
T Consensus 234 ~~~~~al~~~-~~~~~~~~g~~~~~~l~~~--~~~v~~-~~~~~---~~~l~~~d~~v~~----~G~~t~~Ea~~~G~P~ 302 (384)
T 2p6p_A 234 RGLAKDLVRW-DVELIVAAPDTVAEALRAE--VPQARV-GWTPL---DVVAPTCDLLVHH----AGGVSTLTGLSAGVPQ 302 (384)
T ss_dssp HHHHHHHHTT-TCEEEEECCHHHHHHHHHH--CTTSEE-ECCCH---HHHGGGCSEEEEC----SCTTHHHHHHHTTCCE
T ss_pred HHHHHHHhcC-CcEEEEEeCCCCHHhhCCC--CCceEE-cCCCH---HHHHhhCCEEEeC----CcHHHHHHHHHhCCCE
Confidence 8899999876 6788876654433444332 458999 99964 4568999999975 3467899999999999
Q ss_pred EEecCCC----CCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 278 VGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 278 I~s~~~~----~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
|+.+..+ ..+.+ .+...|..++.. +.++++++|.++++|++.++++++.+++....-..+.+++.+.
T Consensus 303 v~~p~~~dq~~~a~~~---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 375 (384)
T 2p6p_A 303 LLIPKGSVLEAPARRV---ADYGAAIALLPGEDSTEAIADSCQELQAKDTYARRAQDLSREISGMPLPATVVTALE 375 (384)
T ss_dssp EECCCSHHHHHHHHHH---HHHTSEEECCTTCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred EEccCcccchHHHHHH---HHCCCeEecCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9987643 44555 455678887754 7999999999999999988888888877766667777666554
No 41
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=99.64 E-value=1.4e-15 Score=138.79 Aligned_cols=261 Identities=15% Similarity=0.080 Sum_probs=158.1
Q ss_pred cchHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccc-cccccccchhHHHHHHHHH--HhCC
Q 016648 50 ALSPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIP-RYTFSWLVKPMWLVIKFLH--RAAD 126 (385)
Q Consensus 50 ~~~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~ad 126 (385)
.....+.+.+++++||+|+++.. .+.+.++++..|+|++...++....... .....+.. ....+..+ ...+
T Consensus 117 ~~~~~l~~~l~~~~pDlVv~d~~---~~~~~~aA~~~giP~v~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~ 190 (398)
T 3oti_A 117 PLVDGTMALVDDYRPDLVVYEQG---ATVGLLAADRAGVPAVQRNQSAWRTRGMHRSIASFLT---DLMDKHQVSLPEPV 190 (398)
T ss_dssp GGHHHHHHHHHHHCCSEEEEETT---CHHHHHHHHHHTCCEEEECCTTCCCTTHHHHHHTTCH---HHHHHTTCCCCCCS
T ss_pred HHHHHHHHHHHHcCCCEEEECch---hhHHHHHHHHcCCCEEEEeccCCCccchhhHHHHHHH---HHHHHcCCCCCCCC
Confidence 34567889999999999998533 2234556788999999877664211100 00000000 00111100 0113
Q ss_pred eEEEcChhHHHHHHHhcccCCCcEEEee-CCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeeccc----cccHHHHH
Q 016648 127 LTLVPSVAIGKDLEAARVTAANKIRIWK-KGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGV----EKSLDFLK 201 (385)
Q Consensus 127 ~ii~~s~~~~~~~~~~~~~~~~~i~vi~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~----~k~~~~l~ 201 (385)
..+...+....... ......+..++ ++- .....-.....+.+.+++++|++.. .+.+..++
T Consensus 191 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~v~v~~G~~~~~~~~~~~~~~~~ 256 (398)
T 3oti_A 191 ATIESFPPSLLLEA---EPEGWFMRWVPYGGG-----------AVLGDRLPPVPARPEVAITMGTIELQAFGIGAVEPII 256 (398)
T ss_dssp EEECSSCGGGGTTS---CCCSBCCCCCCCCCC-----------EECCSSCCCCCSSCEEEECCTTTHHHHHCGGGHHHHH
T ss_pred eEEEeCCHHHCCCC---CCCCCCccccCCCCC-----------cCCchhhhcCCCCCEEEEEcCCCccccCcHHHHHHHH
Confidence 34433332111100 00001111111 110 0000000111334567788899843 34566777
Q ss_pred HHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe-
Q 016648 202 RVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV- 280 (385)
Q Consensus 202 ~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s- 280 (385)
++++.. ++++++++++...+.+... ..++.+.|+++ +.++|..||++|. .+.+++++|||++|+|+|+.
T Consensus 257 ~~l~~~-~~~~v~~~g~~~~~~l~~~--~~~v~~~~~~~---~~~ll~~ad~~v~----~~G~~t~~Eal~~G~P~v~~p 326 (398)
T 3oti_A 257 AAAGEV-DADFVLALGDLDISPLGTL--PRNVRAVGWTP---LHTLLRTCTAVVH----HGGGGTVMTAIDAGIPQLLAP 326 (398)
T ss_dssp HHHHTS-SSEEEEECTTSCCGGGCSC--CTTEEEESSCC---HHHHHTTCSEEEE----CCCHHHHHHHHHHTCCEEECC
T ss_pred HHHHcC-CCEEEEEECCcChhhhccC--CCcEEEEccCC---HHHHHhhCCEEEE----CCCHHHHHHHHHhCCCEEEcC
Confidence 777765 6889998877654433322 34899999984 5567889999995 34568999999999999994
Q ss_pred ---cCCCCC--cccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 016648 281 ---RAGGIP--DIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 281 ---~~~~~~--e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~ 347 (385)
+..... +.+ .+...|+.++.. +.+.++ ++++|++.++++++.+++..+..+++.+++.+.
T Consensus 327 ~~~dq~~~a~~~~~---~~~g~g~~~~~~~~~~~~l~----~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 393 (398)
T 3oti_A 327 DPRDQFQHTAREAV---SRRGIGLVSTSDKVDADLLR----RLIGDESLRTAAREVREEMVALPTPAETVRRIV 393 (398)
T ss_dssp CTTCCSSCTTHHHH---HHHTSEEECCGGGCCHHHHH----HHHHCHHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred CCchhHHHHHHHHH---HHCCCEEeeCCCCCCHHHHH----HHHcCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 456666 777 667789888765 555555 788899999999999988888899999988875
No 42
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=99.54 E-value=1.3e-13 Score=127.36 Aligned_cols=154 Identities=12% Similarity=0.025 Sum_probs=114.7
Q ss_pred CCcEEEEEeeccc-----cccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEE
Q 016648 181 DKPLIVHVGRLGV-----EKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 255 (385)
Q Consensus 181 ~~~~i~~~G~~~~-----~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v 255 (385)
...+++++|+... .+.+..+++++... ++++++.+.+...+.++. ...++.+.+++++. ++|..||++|
T Consensus 267 ~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~g~~~~~~l~~--~~~~v~~~~~~~~~---~ll~~ad~~V 340 (441)
T 2yjn_A 267 RRRVCLTLGISSRENSIGQVSIEELLGAVGDV-DAEIIATFDAQQLEGVAN--IPDNVRTVGFVPMH---ALLPTCAATV 340 (441)
T ss_dssp SCEEEEEC----------CCSTTTTHHHHHTS-SSEEEECCCTTTTSSCSS--CCSSEEECCSCCHH---HHGGGCSEEE
T ss_pred CCEEEEECCCCcccccChHHHHHHHHHHHHcC-CCEEEEEECCcchhhhcc--CCCCEEEecCCCHH---HHHhhCCEEE
Confidence 3457888998865 37888899999876 688888765544332221 13489999999764 4689999999
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHH
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQA 329 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~ 329 (385)
.. +.+++++||+++|+|+|+.+..+ ..+.+ .+...|+.++.. ++++++++|.++++|++.++++++.
T Consensus 341 ~~----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 413 (441)
T 2yjn_A 341 HH----GGPGSWHTAAIHGVPQVILPDGWDTGVRAQRT---QEFGAGIALPVPELTPDQLRESVKRVLDDPAHRAGAARM 413 (441)
T ss_dssp EC----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHHTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred EC----CCHHHHHHHHHhCCCEEEeCCcccHHHHHHHH---HHcCCEEEcccccCCHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 63 44689999999999999987642 34455 456678888765 8999999999999999998888888
Q ss_pred HHHHHHhCCHHHHHHHHH
Q 016648 330 ARQEMEKYDWRAATRTIR 347 (385)
Q Consensus 330 a~~~~~~~s~~~~~~~~~ 347 (385)
+++.....+.+.+++.+.
T Consensus 414 ~~~~~~~~~~~~~~~~i~ 431 (441)
T 2yjn_A 414 RDDMLAEPSPAEVVGICE 431 (441)
T ss_dssp HHHHHTSCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 887777788888887775
No 43
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=99.45 E-value=7.5e-12 Score=114.97 Aligned_cols=154 Identities=12% Similarity=0.075 Sum_probs=107.5
Q ss_pred CCcEEEEEeeccc--cccHHHHHHHHHhCCCceEE-EEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEc
Q 016648 181 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIA-FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMP 257 (385)
Q Consensus 181 ~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~-i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~p 257 (385)
...++++.|+... .+.+..++++++. .+++++ ++|.+...+.+.. ...++.+.+++++. ++|..||++|..
T Consensus 255 ~~~v~v~~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~g~~~~~~~~~~--~~~~v~~~~~~~~~---~~l~~~d~~v~~ 328 (424)
T 2iya_A 255 RPVLLIALGSAFTDHLDFYRTCLSAVDG-LDWHVVLSVGRFVDPADLGE--VPPNVEVHQWVPQL---DILTKASAFITH 328 (424)
T ss_dssp CCEEEEECCSSSCCCHHHHHHHHHHHTT-CSSEEEEECCTTSCGGGGCS--CCTTEEEESSCCHH---HHHTTCSEEEEC
T ss_pred CCEEEEEcCCCCcchHHHHHHHHHHHhc-CCcEEEEEECCcCChHHhcc--CCCCeEEecCCCHH---HHHhhCCEEEEC
Confidence 4566778888762 2345556666655 457774 4676554333322 13479999999765 679999998853
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHHHH
Q 016648 258 SESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAAR 331 (385)
Q Consensus 258 s~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~a~ 331 (385)
+..++++||+++|+|+|+.+..+ ..+.+ .+...|..++.+ +.++++++|.++++|++.++++++.++
T Consensus 329 ----~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~ 401 (424)
T 2iya_A 329 ----AGMGSTMEALSNAVPMVAVPQIAEQTMNAERI---VELGLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAVRQ 401 (424)
T ss_dssp ----CCHHHHHHHHHTTCCEEECCCSHHHHHHHHHH---HHTTSEEECCGGGCCHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ----CchhHHHHHHHcCCCEEEecCccchHHHHHHH---HHCCCEEEcCcCCCCHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 34689999999999999987642 23445 445677777654 899999999999999988877777776
Q ss_pred HHHHhCCHHHHHHHHH
Q 016648 332 QEMEKYDWRAATRTIR 347 (385)
Q Consensus 332 ~~~~~~s~~~~~~~~~ 347 (385)
+.......+..++.+.
T Consensus 402 ~~~~~~~~~~~~~~i~ 417 (424)
T 2iya_A 402 EIREAGGARAAADILE 417 (424)
T ss_dssp HHHTSCHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHH
Confidence 6555555666665554
No 44
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=99.42 E-value=7.8e-13 Score=105.33 Aligned_cols=132 Identities=14% Similarity=0.240 Sum_probs=100.0
Q ss_pred CCCcEEEEEeecc---ccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEE
Q 016648 180 PDKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 256 (385)
Q Consensus 180 ~~~~~i~~~G~~~---~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ 256 (385)
+...+++++|+.. ..|.+..++++++..+ .++++++++...+. ...++++.|+++++++..+ ..||++|.
T Consensus 20 ~~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~-~~~~~~~g~~~~~~-----~~~~v~~~~~~~~~~~l~~-~~ad~~I~ 92 (170)
T 2o6l_A 20 ENGVVVFSLGSMVSNMTEERANVIASALAQIP-QKVLWRFDGNKPDT-----LGLNTRLYKWIPQNDLLGH-PKTRAFIT 92 (170)
T ss_dssp TTCEEEEECCSCCTTCCHHHHHHHHHHHTTSS-SEEEEECCSSCCTT-----CCTTEEEESSCCHHHHHTS-TTEEEEEE
T ss_pred CCCEEEEECCCCcccCCHHHHHHHHHHHHhCC-CeEEEEECCcCccc-----CCCcEEEecCCCHHHHhcC-CCcCEEEE
Confidence 3456788899985 6788899999998774 67777775543221 1348999999987655432 89999996
Q ss_pred cCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHH
Q 016648 257 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRET 325 (385)
Q Consensus 257 ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~ 325 (385)
. +.+++++|||++|+|+|+.+..+ ..+.+ .+...|+.++.. +.++++++|.++++|++.+++
T Consensus 93 ~----~G~~t~~Ea~~~G~P~i~~p~~~~Q~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~ 160 (170)
T 2o6l_A 93 H----GGANGIYEAIYHGIPMVGIPLFADQPDNIAHM---KARGAAVRVDFNTMSSTDLLNALKRVINDPSYKEN 160 (170)
T ss_dssp C----CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HTTTSEEECCTTTCCHHHHHHHHHHHHHCHHHHHH
T ss_pred c----CCccHHHHHHHcCCCEEeccchhhHHHHHHHH---HHcCCeEEeccccCCHHHHHHHHHHHHcCHHHHHH
Confidence 4 44799999999999999997642 34456 566788888766 899999999999998864433
No 45
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=99.40 E-value=1.1e-11 Score=115.28 Aligned_cols=271 Identities=13% Similarity=0.088 Sum_probs=168.6
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
...+.+.|++.++||++--+.++... ...++...-.|+-++.-++.... . +...|.+++-
T Consensus 338 ~~~ia~~Ir~d~IDILVdL~g~t~~~-~i~~aa~RpAPVQvs~lGyp~TT-G------------------l~~iDY~i~D 397 (631)
T 3q3e_A 338 LEFIRSVCESNGAAIFYMPSIGMDMT-TIFASNTRLAPIQAIALGHPATT-H------------------SDFIEYVIVE 397 (631)
T ss_dssp HHHHHHHHHHHTCSEEEESCCSSSHH-HHHHTTSCCSSEEEEECSSCSCC-C------------------CTTCCEEEEE
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCch-hHHHHhCCCchheEeccCCCccc-C------------------cccCCEEEeC
Confidence 46888999999999999866544332 22333345678877766643211 1 2446777764
Q ss_pred ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCC--CCcEEEEEeeccccccHHHHHHHHH----
Q 016648 132 SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEP--DKPLIVHVGRLGVEKSLDFLKRVMD---- 205 (385)
Q Consensus 132 s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~G~~~~~k~~~~l~~a~~---- 205 (385)
....- -... -.+++..+|+..-. +.+..... .+..... +. +.++++.+++. .|..+.+++++.
T Consensus 398 ~~~~~--~~~~---ysEklirLP~~~~~--~~p~~~~p-~r~~~~l-p~~~G~v~Fg~fn~~--~Ki~p~~l~~WarIL~ 466 (631)
T 3q3e_A 398 DDYVG--SEEC---FSETLLRLPKDALP--YVPSALAP-EKVDYLL-RENPEVVNIGIASTT--MKLNPYFLEALKAIRD 466 (631)
T ss_dssp GGGCC--CGGG---CSSEEEEECTTSSC--CCCCTTCC-SSCCCCC-CSCCSEEEEEEEECS--TTCCHHHHHHHHHHHH
T ss_pred CCCCC--cccC---ceeeEEECCCCccc--cCCcccCC-ccccccC-CcCCCeEEEEECCcc--ccCCHHHHHHHHHHHH
Confidence 42211 0122 24788888864211 11111100 0111111 22 24566666654 566666666554
Q ss_pred hCCCceEE--EEeC--CccHHHHHHH---HcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 206 RLPEARIA--FIGD--GPYREELEKM---FTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 206 ~~~~~~l~--i~G~--g~~~~~l~~~---~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
+.|+..+. +.|. |.....+++. .-..++.|.|.++.++....|+.+|+++.|+.+.| |++.+|||+||+|||
T Consensus 467 ~vP~s~L~l~~~g~~~g~~~~~~~~~~~~GI~~Rv~F~g~~p~~e~la~y~~aDIfLDpfpy~G-gtTtlEALwmGVPVV 545 (631)
T 3q3e_A 467 RAKVKVHFHFALGQSNGITHPYVERFIKSYLGDSATAHPHSPYHQYLRILHNCDMMVNPFPFGN-TNGIIDMVTLGLVGV 545 (631)
T ss_dssp HCSSEEEEEEEESSCCGGGHHHHHHHHHHHHGGGEEEECCCCHHHHHHHHHTCSEEECCSSSCC-SHHHHHHHHTTCCEE
T ss_pred hCCCcEEEEEecCCCchhhHHHHHHHHHcCCCccEEEcCCCCHHHHHHHHhcCcEEEeCCcccC-ChHHHHHHHcCCCEE
Confidence 55776553 3563 2333333222 12247899999999999999999999999987655 999999999999999
Q ss_pred EecCCCCCcccccC---CCCCeeE-eeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH-H--hCCHHHHHHHHHHHHH
Q 016648 279 GVRAGGIPDIIPED---QDGKIGY-LFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEM-E--KYDWRAATRTIRNEQY 351 (385)
Q Consensus 279 ~s~~~~~~e~~~~~---~~~~~g~-~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~-~--~~s~~~~~~~~~~~iy 351 (385)
+.....+...+... .-|...+ +.. |.+++++...++.+|++.+++++++.++.. . -|+ ...+++. +.|
T Consensus 546 Tl~G~~~asRvgaSlL~~~GLpE~LIA~--d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd--~~~~~~e-~~y 620 (631)
T 3q3e_A 546 CKTGAEVHEHIDEGLFKRLGLPEWLIAN--TVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFT--GDPRPMG-QVF 620 (631)
T ss_dssp EECCSSHHHHHHHHHHHHTTCCGGGEES--SHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC--SCCTHHH-HHH
T ss_pred eccCCcHHHHhHHHHHHhcCCCcceecC--CHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc--hhHHHHH-HHH
Confidence 97665554333000 0233443 433 899999999999999999999999988774 2 255 5567774 688
Q ss_pred HHHHHHHH
Q 016648 352 NAAIWFWR 359 (385)
Q Consensus 352 ~~~~~~~~ 359 (385)
+++..+..
T Consensus 621 e~~~~~w~ 628 (631)
T 3q3e_A 621 LEKLNAFL 628 (631)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88876544
No 46
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=99.29 E-value=3e-11 Score=114.63 Aligned_cols=286 Identities=12% Similarity=0.099 Sum_probs=184.5
Q ss_pred CCCEEEeCCCchhHHHH-HHHH-------------HHhCCCEEEEEecCCCcccccccccccchh---------------
Q 016648 63 KPDIIHASSPGIMVFGA-LIIA-------------KLLCVPIVMSYHTHVPVYIPRYTFSWLVKP--------------- 113 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~-~~~~-------------~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~--------------- 113 (385)
+||+||+|++++..... ++.. ...+..+++|.|+..+.....+....+.+.
T Consensus 299 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~f 378 (796)
T 1l5w_A 299 DYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRF 378 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHTTTEEEECCCCSGGGSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CccEEEecCCccHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCCcHhhhhcCCHHHHHHHhHHHHHHHhccCHHH
Confidence 69999999875544333 2210 115788999999988765432221111000
Q ss_pred ------------------------HHHHHHHHHHhCCeEEEcChhHHHHHHHh-----cccCCCcEEEeeCCCCCCCC--
Q 016648 114 ------------------------MWLVIKFLHRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESF-- 162 (385)
Q Consensus 114 ------------------------~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-----~~~~~~~i~vi~~~v~~~~~-- 162 (385)
.-.+....+..++.|-++|+...+.++.. ...-+.++.-+-|||+...+
T Consensus 379 ~~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~ 458 (796)
T 1l5w_A 379 KTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIK 458 (796)
T ss_dssp HHHHHHHSTTCHHHHHHHCSEETTEEEHHHHHHHHSSEEEESSHHHHHHHHHTTSHHHHHHCGGGEEECCCCBCHHHHTT
T ss_pred HHHHHHhcCCcHHHHhhhhcccCCcccHHHHHHHhcCccccccHHHHHHHHhHHhhHHHHhCccccCCCcCCCcHHHhhc
Confidence 00134556788999999999999998752 22234689999999987655
Q ss_pred --CCC--------------------------CCC----hhh---------------HhhhcC-CCCCCcEEEEEeecccc
Q 016648 163 --HPR--------------------------FRS----SEM---------------RWRLSN-GEPDKPLIVHVGRLGVE 194 (385)
Q Consensus 163 --~~~--------------------------~~~----~~~---------------~~~~~~-~~~~~~~i~~~G~~~~~ 194 (385)
+|. ... .+. ..+... ..++.+.++++.|+...
T Consensus 459 ~~NP~l~~li~~~~g~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRl~eY 538 (796)
T 1l5w_A 459 QCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEY 538 (796)
T ss_dssp TTCHHHHHHHHHHCSSCCTTCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGG
T ss_pred ccCHhHHHHHHHhcCcccccCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhh
Confidence 221 111 000 111121 23467889999999999
Q ss_pred ccHHH-HHHHHHhC-----------CCceEEEEeCCc--cHHH------HHHHHc------C----CCeEEecccChHHH
Q 016648 195 KSLDF-LKRVMDRL-----------PEARIAFIGDGP--YREE------LEKMFT------G----MPAVFTGMLLGEEL 244 (385)
Q Consensus 195 k~~~~-l~~a~~~~-----------~~~~l~i~G~g~--~~~~------l~~~~~------~----~~i~~~g~~~~~~~ 244 (385)
|+.++ ++..+.++ .++++++.|.+. +... +..... . .+|.|+...+-+-.
T Consensus 539 KRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~~~~lKVvfl~nY~vslA 618 (796)
T 1l5w_A 539 KRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAA 618 (796)
T ss_dssp GTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTGGGEEEEECSSCCHHHH
T ss_pred cccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHH
Confidence 99999 77766544 257888888654 2211 223322 1 14888887777778
Q ss_pred HHHHHhCcEEEEcCC--CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhh-----
Q 016648 245 SQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL----- 317 (385)
Q Consensus 245 ~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll----- 317 (385)
..++..||+.+.||+ .|++|++=+-+|..|.+.|++-.|...|+.+. ...+||+++.. +++++.+.-....
T Consensus 619 ~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~-vG~~NgF~FG~-~~~ev~~l~~~~y~a~~~ 696 (796)
T 1l5w_A 619 EKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEK-VGEENIFIFGH-TVEQVKAILAKGYDPVKW 696 (796)
T ss_dssp HHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHH-HCGGGSEECSC-CHHHHHHHHHHCCCHHHH
T ss_pred HHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeeecCcCCeeeehhhc-cCCCcEEEecC-CHHHHHHHHHcccCHHHH
Confidence 889999999999999 99999999999999999998888888777622 12469999987 8888764333221
Q ss_pred --cCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q 016648 318 --YNQELRETMGQAARQEMEKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 318 --~~~~~~~~~~~~a~~~~~~~s~~~~~~~~~~~iy~~~~ 355 (385)
+++ ..+++..++.. ..|||+.- +.+. .+|++++
T Consensus 697 y~~~~-~~~~vvd~~~~--g~fs~~~~-~~y~-~Ly~~L~ 731 (796)
T 1l5w_A 697 RKKDK-VLDAVLKELES--GKYSDGDK-HAFD-QMLHSIG 731 (796)
T ss_dssp HHHCH-HHHHHHHHHHH--TTTTTTCT-TTTH-HHHHHTS
T ss_pred hhcCH-HHHHHHHHHHc--CCCCCCcH-HHHH-HHHHHHh
Confidence 233 22222222221 35998774 5564 6887774
No 47
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=99.29 E-value=1.3e-11 Score=117.18 Aligned_cols=284 Identities=13% Similarity=0.090 Sum_probs=184.1
Q ss_pred CCCEEEeCCCchhHHHH-HHHHH-----------H--hCCCEEEEEecCCCcccccccccccchh---------------
Q 016648 63 KPDIIHASSPGIMVFGA-LIIAK-----------L--LCVPIVMSYHTHVPVYIPRYTFSWLVKP--------------- 113 (385)
Q Consensus 63 ~pDiI~~~~~~~~~~~~-~~~~~-----------~--~~~p~v~~~h~~~~~~~~~~~~~~~~~~--------------- 113 (385)
+||+||+|++++..... ++... . .+..+++|.|+..+.....+....+.+.
T Consensus 289 ~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A~~i~~~~~vyT~HTl~~egle~wp~~l~~~~lpr~~~ii~~I~~~~ 368 (796)
T 2c4m_A 289 EFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEESWAIVSKTFAYTNHTVLTEALEQWDEQIFQQLFWRVWEIIAEIDRRF 368 (796)
T ss_dssp HHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHHHHHHHHHEEEECCCSSSTTSCEEEHHHHHHHCHHHHHHHHHHHHHH
T ss_pred CCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHHHHHhhccEEEEecCchHHHhhhCCHHHHHHHhHHHHHHHcCcCHHH
Confidence 68999999875544333 22100 1 4567899999988765432221111000
Q ss_pred -----------------------HHHHHHHHHHhCCeEEEcChhHHHHHHHh-----cccCCCcEEEeeCCCCCCCC---
Q 016648 114 -----------------------MWLVIKFLHRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESF--- 162 (385)
Q Consensus 114 -----------------------~~~~~~~~~~~ad~ii~~s~~~~~~~~~~-----~~~~~~~i~vi~~~v~~~~~--- 162 (385)
.-.+....+..++.|-++|+...+.++.. ...-+.++.-+-|||+...+
T Consensus 369 ~~~~~~~~~~~~~~~~~~i~~~~~vnMa~lai~~S~~VNgVS~lHae~ik~~~f~~~~~~~p~kf~~iTNGI~~rrWl~~ 448 (796)
T 2c4m_A 369 RLERAADGLDEETINRMAPIQHGTVHMAWIACYAAYSINGVAALHTEIIKAETLADWYALWPEKFNNKTNGVTPRRWLRM 448 (796)
T ss_dssp HHHHHHTTCCHHHHHHHCSEETTEEEHHHHHHHHCSEEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCT
T ss_pred HHHHHhcCCcHhhhhcccceeCCcccHHHHHHHhcCceeeccHHHHHHhhhhhhhhHHHcCccccccccCCcchHHhhcc
Confidence 00134556788999999999999998842 22235689999999999888
Q ss_pred -CCC---------------------------CCCh-------hh------------Hhhhc-CCCCCCcEEEEEeecccc
Q 016648 163 -HPR---------------------------FRSS-------EM------------RWRLS-NGEPDKPLIVHVGRLGVE 194 (385)
Q Consensus 163 -~~~---------------------------~~~~-------~~------------~~~~~-~~~~~~~~i~~~G~~~~~ 194 (385)
+|. .... +. ..+.. ...++.+.++++.|+...
T Consensus 449 ~NP~l~~li~~~~g~~~w~~d~~~l~~l~~~~~d~~~~~~l~~~K~~nK~~L~~~l~~~~Gl~vdpd~l~~~~vkRlheY 528 (796)
T 2c4m_A 449 INPGLSDLLTRLSGSDDWVTDLDELKKLRSYADDKSVLEELRAIKAANKQDFAEWILERQGIEIDPESIFDVQIKRLHEY 528 (796)
T ss_dssp TCHHHHHHHHHHHSSSGGGGCGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEECCCCGG
T ss_pred cCHhHHHHHHHhcCchhhhhChHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcEEEEeecchhh
Confidence 222 1110 00 01111 123467899999999999
Q ss_pred ccHHH-HHHHHHhC-----------CCceEEEEeCCc--cHHH------HHHHHc--------CC--CeEEecccChHHH
Q 016648 195 KSLDF-LKRVMDRL-----------PEARIAFIGDGP--YREE------LEKMFT--------GM--PAVFTGMLLGEEL 244 (385)
Q Consensus 195 k~~~~-l~~a~~~~-----------~~~~l~i~G~g~--~~~~------l~~~~~--------~~--~i~~~g~~~~~~~ 244 (385)
|+.++ ++..+.++ .++++++.|.+. +... +..... .. +|.|+...+-+-.
T Consensus 529 KRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~~~~lKVvFl~nY~vslA 608 (796)
T 2c4m_A 529 KRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEVSPLLKVVFVENYNVSPA 608 (796)
T ss_dssp GTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTTTTTEEEEEETTCCHHHH
T ss_pred cccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhccccccCCceEEEEECCCCHHHH
Confidence 99999 77765544 257888888654 2221 333322 11 4888887777778
Q ss_pred HHHHHhCcEEEEcCC--CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCC--CCHHHHHHHHhHhh---
Q 016648 245 SQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLL--- 317 (385)
Q Consensus 245 ~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~--~~~~~l~~~i~~ll--- 317 (385)
..++..||+.+.||+ .|++|++=+-+|..|.+.|++-.|...|+.+. ...+||+++.. .+++++... ....
T Consensus 609 ~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDGanvEi~e~-vG~~NgF~FG~~~~ev~~l~~~-y~a~~~y 686 (796)
T 2c4m_A 609 EHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDGANVEIVDS-VGEENAYIFGARVEELPALRES-YKPYELY 686 (796)
T ss_dssp HHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESSTHHHHHHHH-HCGGGSEEESCCTTTHHHHHHT-CCHHHHH
T ss_pred HHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCCeEeehhhh-cCCCcEEEecCchhhHHHHHHh-hChHHHh
Confidence 899999999999999 99999999999999999998888877777621 12469999986 666666554 2211
Q ss_pred -cCHHHHHHHHHHHHHHH--HhCCHHHHHHHHHHHHHHHHH
Q 016648 318 -YNQELRETMGQAARQEM--EKYDWRAATRTIRNEQYNAAI 355 (385)
Q Consensus 318 -~~~~~~~~~~~~a~~~~--~~~s~~~~~~~~~~~iy~~~~ 355 (385)
++++ .+ +..+.+ ..|||+.- +.+. .+|++++
T Consensus 687 ~~~~~-~~----~vvd~~~~g~fs~~~~-~~y~-~Ly~~L~ 720 (796)
T 2c4m_A 687 ETVPG-LK----RALDALDNGTLNDNNS-GLFY-DLKHSLI 720 (796)
T ss_dssp HHSTT-HH----HHHHTTTSSSSCCTTC-CHHH-HHHHHHH
T ss_pred hcCHH-HH----HHHHHHHcCCCCCCCH-HHHH-HHHHHHH
Confidence 1221 12 222222 34888776 5674 6888876
No 48
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=99.23 E-value=2.7e-10 Score=108.58 Aligned_cols=193 Identities=14% Similarity=0.160 Sum_probs=135.1
Q ss_pred HHHHHHhCCeEEEcChhHHHHHHHh-----cccCCCcEEEeeCCCCCCCC----CCCC----------------------
Q 016648 118 IKFLHRAADLTLVPSVAIGKDLEAA-----RVTAANKIRIWKKGVDSESF----HPRF---------------------- 166 (385)
Q Consensus 118 ~~~~~~~ad~ii~~s~~~~~~~~~~-----~~~~~~~i~vi~~~v~~~~~----~~~~---------------------- 166 (385)
....+..++.|-++|+...+.++.. +...+.++.-+-|||+...+ +|..
T Consensus 431 a~lai~~S~~VNgVS~lH~e~ik~~~f~~~~~~~p~k~~~iTNGI~~rrWl~~~NP~l~~lI~~~ig~~W~~~~~~l~~L 510 (824)
T 2gj4_A 431 AHLCIAGSHAVNGVARIHSEILKKTIFKDFYELEPHKFQNKTNGITPRRWLVLCNPGLAEIIAERIGEEYISDLDQLRKL 510 (824)
T ss_dssp HHHHHHTCSCEEESSHHHHHHHHHTTTHHHHHHCGGGEEECCCCBCTCCCCCCTCHHHHHHHHHHHCSGGGGCGGGGGGG
T ss_pred HHHHHHhcCceeeEcHHHHHHHhhHHhHHHHHcChhhcccccCCcChhhhcccCCHhHHHHHHHhcCchhhhCHHHHHHH
Confidence 3456788999999999999888642 11235689999999998887 3311
Q ss_pred ---CC-hhh-------------------Hhhhc-CCCCCCcEEEEEeeccccccHHHH-HHHHHhC------C-----Cc
Q 016648 167 ---RS-SEM-------------------RWRLS-NGEPDKPLIVHVGRLGVEKSLDFL-KRVMDRL------P-----EA 210 (385)
Q Consensus 167 ---~~-~~~-------------------~~~~~-~~~~~~~~i~~~G~~~~~k~~~~l-~~a~~~~------~-----~~ 210 (385)
.. ... ..+.. ...++.+.++++.|+...|+.+++ +..+.++ | +.
T Consensus 511 ~~y~~d~~~~~~~~~~K~~nK~~la~~l~~~~Gl~vdpd~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~~~~~~~~p~ 590 (824)
T 2gj4_A 511 LSYVDDEAFIRDVAKVKQENKLKFAAYLEREYKVHINPNSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKKEPNKFVVPR 590 (824)
T ss_dssp GGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHCTTSCCCCE
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcceEeeeecchhhcchhhHHHHHHHHHHHHHhCCCCCCCCE
Confidence 00 111 00011 123467899999999999999887 6655444 2 46
Q ss_pred eEEEEeCCc--cHHH------HHHHHc--------CC--CeEEecccChHHHHHHHHhCcEEEEcCC--CCCCcHHHHHH
Q 016648 211 RIAFIGDGP--YREE------LEKMFT--------GM--PAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEA 270 (385)
Q Consensus 211 ~l~i~G~g~--~~~~------l~~~~~--------~~--~i~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea 270 (385)
++++.|.+. +... +..... .. +|.|+...+-+-...++..||+.+.||+ .|++|++=+=+
T Consensus 591 q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v~~~lKVvFl~nYdvslA~~I~~gaDv~l~~S~ag~EAsGTs~MKa 670 (824)
T 2gj4_A 591 TVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVVGDRLRVIFLENYRVSLAEKVIPAADLSEQISTAGTEASGTGNMKF 670 (824)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTTGGGEEEEEETTCCHHHHHHHGGGCSEEEECCCTTSCSCCSHHHHH
T ss_pred EEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCcccCCceEEEEECCCCHHHHHHHhhhcceeecCCCCCCCCCchHHHHH
Confidence 888888654 2111 222222 11 5888887777778889999999999999 99999999999
Q ss_pred HhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHH
Q 016648 271 MSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKL 313 (385)
Q Consensus 271 ~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i 313 (385)
|..|.+.|++-.|...|+.+. ....||+++... ++++ .++
T Consensus 671 mlNGaLtigtlDGanvEi~e~-vG~~Ngf~FG~~-~~ev-~~l 710 (824)
T 2gj4_A 671 MLNGALTIGTMDGANVEMAEE-AGEENFFIFGMR-VEDV-DRL 710 (824)
T ss_dssp HHTTCEEEECSCTTHHHHHHH-HCGGGSEECSCC-HHHH-HHH
T ss_pred HHcCceEEEEecCccchhhhc-cCCCCEEEeCCc-HHHH-HHH
Confidence 999999999877776666511 145689998864 6666 444
No 49
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.22 E-value=9.3e-10 Score=100.64 Aligned_cols=136 Identities=12% Similarity=0.093 Sum_probs=96.4
Q ss_pred CCcEEEEEeec-cccccHHHHHHHHHhCCCceEEEE-eCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcC
Q 016648 181 DKPLIVHVGRL-GVEKSLDFLKRVMDRLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 258 (385)
Q Consensus 181 ~~~~i~~~G~~-~~~k~~~~l~~a~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps 258 (385)
...++++.|+. ...+..+.++++++.++ .+++++ |.+... .. ....++.+.+++++.+ +|..||++|..
T Consensus 238 ~~~v~v~~Gs~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~~--~~--~~~~~v~~~~~~~~~~---~l~~~d~~v~~- 308 (415)
T 1iir_A 238 PPPVYLGFGSLGAPADAVRVAIDAIRAHG-RRVILSRGWADLV--LP--DDGADCFAIGEVNHQV---LFGRVAAVIHH- 308 (415)
T ss_dssp SCCEEEECC---CCHHHHHHHHHHHHHTT-CCEEECTTCTTCC--CS--SCGGGEEECSSCCHHH---HGGGSSEEEEC-
T ss_pred CCeEEEeCCCCCCcHHHHHHHHHHHHHCC-CeEEEEeCCCccc--cc--CCCCCEEEeCcCChHH---HHhhCCEEEeC-
Confidence 35678889998 47888899999998875 566554 654321 11 1123799999998755 47999999964
Q ss_pred CCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHHHHH
Q 016648 259 ESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQ 332 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~a~~ 332 (385)
+..++++||+++|+|+|+.+..+ ..+.+ .+...|..++.. +.++++++|.++ +|++.++++++.+++
T Consensus 309 ---~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~~~ 381 (415)
T 1iir_A 309 ---GGAGTTHVAARAGAPQILLPQMADQPYYAGRV---AELGVGVAHDGPIPTFDSLSAALATA-LTPETHARATAVAGT 381 (415)
T ss_dssp ---CCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHHHHHHHH
T ss_pred ---CChhHHHHHHHcCCCEEECCCCCccHHHHHHH---HHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHHHHHHHH
Confidence 34579999999999999987643 33445 445677777643 899999999999 887766655554443
No 50
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=99.22 E-value=7.8e-10 Score=100.73 Aligned_cols=151 Identities=12% Similarity=0.063 Sum_probs=101.1
Q ss_pred CCCcEEEEEeecc-ccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcC
Q 016648 180 PDKPLIVHVGRLG-VEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 258 (385)
Q Consensus 180 ~~~~~i~~~G~~~-~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps 258 (385)
..+.++++.|+.. ..+.+..++++++.. +.++++.+++...+. .....++.+.++++.+ ++|..||++|...
T Consensus 220 ~~~~Vlv~~Gs~~~~~~~~~~~~~al~~~-~~~vv~~~g~~~~~~---~~~~~~v~~~~~~~~~---~ll~~~d~~v~~g 292 (404)
T 3h4t_A 220 GSPPVYVGFGSGPAPAEAARVAIEAVRAQ-GRRVVLSSGWAGLGR---IDEGDDCLVVGEVNHQ---VLFGRVAAVVHHG 292 (404)
T ss_dssp SSCCEEECCTTSCCCTTHHHHHHHHHHHT-TCCEEEECTTTTCCC---SSCCTTEEEESSCCHH---HHGGGSSEEEECC
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHHHhC-CCEEEEEeCCccccc---ccCCCCEEEecCCCHH---HHHhhCcEEEECC
Confidence 3466788889887 667788899999886 567777654322111 1124589999999754 4678999999443
Q ss_pred CCCCCcHHHHHHHhcCCcEEEecCCCC----CcccccCCCCCeeEeeCCC--CHHHHHHHHhHhhcCHHHHHHHHHHHHH
Q 016648 259 ESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFNPG--DLDDCLSKLEPLLYNQELRETMGQAARQ 332 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s~~~~~----~e~~~~~~~~~~g~~~~~~--~~~~l~~~i~~ll~~~~~~~~~~~~a~~ 332 (385)
..+++.||+++|+|+|+....+- .+.+ .....|..++.. +.+++.+++.++++ ++.++++.+.+..
T Consensus 293 ----G~~t~~Eal~~GvP~v~~p~~~dQ~~na~~~---~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~~~~~~~~~~ 364 (404)
T 3h4t_A 293 ----GAGTTTAVTRAGAPQVVVPQKADQPYYAGRV---ADLGVGVAHDGPTPTVESLSAALATALT-PGIRARAAAVAGT 364 (404)
T ss_dssp ----CHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHHHHHHHHHTT
T ss_pred ----cHHHHHHHHHcCCCEEEcCCcccHHHHHHHH---HHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHHHHHHHHHHH
Confidence 45789999999999999765432 2234 344566666533 79999999999998 7666555544443
Q ss_pred HHHhCCHHHHHHHH
Q 016648 333 EMEKYDWRAATRTI 346 (385)
Q Consensus 333 ~~~~~s~~~~~~~~ 346 (385)
... -..+.+++.+
T Consensus 365 ~~~-~~~~~~~~~i 377 (404)
T 3h4t_A 365 IRT-DGTTVAAKLL 377 (404)
T ss_dssp CCC-CHHHHHHHHH
T ss_pred Hhh-hHHHHHHHHH
Confidence 323 3444444444
No 51
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=99.17 E-value=1.6e-10 Score=105.12 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=97.0
Q ss_pred CCCcEEEEEeecccccc----HHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEE
Q 016648 180 PDKPLIVHVGRLGVEKS----LDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFV 255 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~----~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v 255 (385)
+...+++..|++...++ +..+++++... +..+++.+.+...+.... ...++.+.+++|+.+ +|..+|++|
T Consensus 236 ~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~~~~~~~~~~~--~~~~v~~~~~~p~~~---lL~~~~~~v 309 (400)
T 4amg_A 236 GRRRIAVTLGSIDALSGGIAKLAPLFSEVADV-DAEFVLTLGGGDLALLGE--LPANVRVVEWIPLGA---LLETCDAII 309 (400)
T ss_dssp TCCEEEECCCSCC--CCSSSTTHHHHHHGGGS-SSEEEEECCTTCCCCCCC--CCTTEEEECCCCHHH---HHTTCSEEE
T ss_pred CCcEEEEeCCcccccCccHHHHHHHHHHhhcc-CceEEEEecCcccccccc--CCCCEEEEeecCHHH---Hhhhhhhee
Confidence 34556777787754432 44455555554 456666554332221111 124799999997654 588999988
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHH
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAAR 331 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~ 331 (385)
. .+..+++.||+++|+|+|+....+ +.+.+ .+...|..++. .+..+++|.++++|++.+++.++.++
T Consensus 310 ~----h~G~~s~~Eal~~GvP~v~~P~~~dQ~~na~~v---~~~G~g~~l~~--~~~~~~al~~lL~d~~~r~~a~~l~~ 380 (400)
T 4amg_A 310 H----HGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVL---TGLGIGFDAEA--GSLGAEQCRRLLDDAGLREAALRVRQ 380 (400)
T ss_dssp E----CCCHHHHHHHHHHTCCEEECCC---CHHHHHHH---HHHTSEEECCT--TTCSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred c----cCCccHHHHHHHhCCCEEEecCcccHHHHHHHH---HHCCCEEEcCC--CCchHHHHHHHHcCHHHHHHHHHHHH
Confidence 4 455789999999999999865543 33444 34456776663 44567899999999987776666655
Q ss_pred HHHHhCCHHHHHHHHH
Q 016648 332 QEMEKYDWRAATRTIR 347 (385)
Q Consensus 332 ~~~~~~s~~~~~~~~~ 347 (385)
+....-+....++.+.
T Consensus 381 ~~~~~~~~~~~a~~le 396 (400)
T 4amg_A 381 EMSEMPPPAETAAXLV 396 (400)
T ss_dssp HHHTSCCHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHH
Confidence 5555567777666653
No 52
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=99.07 E-value=4.2e-09 Score=96.34 Aligned_cols=135 Identities=10% Similarity=0.073 Sum_probs=95.3
Q ss_pred CCcEEEEEeecc---ccccHHHHHHHHHhCCCceEEEE-eCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEE
Q 016648 181 DKPLIVHVGRLG---VEKSLDFLKRVMDRLPEARIAFI-GDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVM 256 (385)
Q Consensus 181 ~~~~i~~~G~~~---~~k~~~~l~~a~~~~~~~~l~i~-G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ 256 (385)
...++++.|+.. ..+.++.++++++.. +.+++++ |.+... .. ....++.+.++++.. ++|..||++|.
T Consensus 237 ~~~v~v~~Gs~~~~~~~~~~~~~~~al~~~-~~~~v~~~g~~~~~--~~--~~~~~v~~~~~~~~~---~ll~~~d~~v~ 308 (416)
T 1rrv_A 237 SPPVHIGFGSSSGRGIADAAKVAVEAIRAQ-GRRVILSRGWTELV--LP--DDRDDCFAIDEVNFQ---ALFRRVAAVIH 308 (416)
T ss_dssp SCCEEECCTTCCSHHHHHHHHHHHHHHHHT-TCCEEEECTTTTCC--CS--CCCTTEEEESSCCHH---HHGGGSSEEEE
T ss_pred CCeEEEecCCCCccChHHHHHHHHHHHHHC-CCeEEEEeCCcccc--cc--CCCCCEEEeccCChH---HHhccCCEEEe
Confidence 356778888874 467788888998887 4666664 654321 11 113479999999754 46899999996
Q ss_pred cCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCCCeeEeeCC--CCHHHHHHHHhHhhcCHHHHHHHHHHH
Q 016648 257 PSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDGKIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAA 330 (385)
Q Consensus 257 ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~~~g~~~~~--~~~~~l~~~i~~ll~~~~~~~~~~~~a 330 (385)
.+..+++.||+++|+|+|+.+..+ ..+.+ .+...|..++. .+.++++++|.++ +|++.++++++.+
T Consensus 309 ----~~G~~t~~Ea~~~G~P~i~~p~~~dQ~~na~~l---~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~~~~~ 380 (416)
T 1rrv_A 309 ----HGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRV---AALGIGVAHDGPTPTFESLSAALTTV-LAPETRARAEAVA 380 (416)
T ss_dssp ----CCCHHHHHHHHHHTCCEEECCCSBTHHHHHHHH---HHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHHHHHHT
T ss_pred ----cCChhHHHHHHHcCCCEEEccCCCCcHHHHHHH---HHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHHHHHHH
Confidence 344679999999999999976532 23344 44556776653 4889999999999 9887666655544
Q ss_pred H
Q 016648 331 R 331 (385)
Q Consensus 331 ~ 331 (385)
+
T Consensus 381 ~ 381 (416)
T 1rrv_A 381 G 381 (416)
T ss_dssp T
T ss_pred H
Confidence 3
No 53
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=98.68 E-value=2.3e-07 Score=79.12 Aligned_cols=191 Identities=10% Similarity=0.018 Sum_probs=110.5
Q ss_pred hHHHHHHhhccCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHhCCeEEEc
Q 016648 52 SPRIISEVARFKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRAADLTLVP 131 (385)
Q Consensus 52 ~~~l~~~i~~~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~ 131 (385)
...+.+.+++.+||++++.++....-....++...+.++++ +-|.. . . ..||.++-.
T Consensus 58 ~~~~~~~l~~~~~d~lIvD~Y~~~~~~~~~lk~~~~~~i~~-iDD~~-~----~-----------------~~~Dllin~ 114 (282)
T 3hbm_A 58 IYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILS-FDDEI-K----P-----------------HHCDILLNV 114 (282)
T ss_dssp HHHHHHHHHHHTCSEEEEECTTCCHHHHHHHHHHHCCEEEE-ECSSC-C----C-----------------CCCSEEEEC
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCHHHHHHHHHhcCcEEEE-EecCC-C----c-----------------ccCCEEEeC
Confidence 45678888889999999987744332222222324666654 34421 0 0 238999887
Q ss_pred ChhHHHHHHHhc-ccCCCcEEEeeCCCCCCCCCCCCCChhhHh-hhcCCCCCCcEEEEEeeccccccHHHHHHHHHhCCC
Q 016648 132 SVAIGKDLEAAR-VTAANKIRIWKKGVDSESFHPRFRSSEMRW-RLSNGEPDKPLIVHVGRLGVEKSLDFLKRVMDRLPE 209 (385)
Q Consensus 132 s~~~~~~~~~~~-~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~ 209 (385)
+...... .+- ..|....... |.+.. +.. ++... +.....+.+.+++++|..+...-...+++++.....
T Consensus 115 ~~~~~~~--~Y~~~~p~~~~~l~--G~~Y~---~lR--~eF~~~~~~~r~~~~~ILv~~GG~d~~~l~~~vl~~L~~~~~ 185 (282)
T 3hbm_A 115 NAYAKAS--DYEGLVPFKCEVRC--GFSYA---LIR--EEFYQEAKENRKKKYDFFICMGGTDIKNLSLQIASELPKTKI 185 (282)
T ss_dssp STTCCGG--GGTTTCC-CCEEEE--SGGGC---CCC--HHHHHHTTCCCCCCEEEEEECCSCCTTCHHHHHHHHSCTTSC
T ss_pred Ccccchh--hccccCCCCCeEee--CCccc---ccC--HHHHHhhhhccccCCeEEEEECCCchhhHHHHHHHHhhcCCC
Confidence 6543211 111 1122222222 32211 111 11110 001112233456788877665555666777655433
Q ss_pred ceEEEEeCCc-cHHHHHHHHcC-CCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecC
Q 016648 210 ARIAFIGDGP-YREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 210 ~~l~i~G~g~-~~~~l~~~~~~-~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~ 282 (385)
-.++.|.+. ..+.+++.... .++.+.+++ +++.++|+.||++|.+. |.++.|++++|+|.|.-..
T Consensus 186 -i~vv~G~~~~~~~~l~~~~~~~~~v~v~~~~--~~m~~~m~~aDlvI~~g-----G~T~~E~~~~g~P~i~ip~ 252 (282)
T 3hbm_A 186 -ISIATSSSNPNLKKLQKFAKLHNNIRLFIDH--ENIAKLMNESNKLIISA-----SSLVNEALLLKANFKAICY 252 (282)
T ss_dssp -EEEEECTTCTTHHHHHHHHHTCSSEEEEESC--SCHHHHHHTEEEEEEES-----SHHHHHHHHTTCCEEEECC
T ss_pred -EEEEECCCchHHHHHHHHHhhCCCEEEEeCH--HHHHHHHHHCCEEEECC-----cHHHHHHHHcCCCEEEEeC
Confidence 334566553 45666665543 479999999 89999999999999742 5899999999999997653
No 54
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.67 E-value=1e-06 Score=85.68 Aligned_cols=177 Identities=10% Similarity=0.098 Sum_probs=127.1
Q ss_pred CCCCcEEEEEeecccc--ccHHHHHHHHHhCCCceEEEEeCCcc-HHHHHHHHcC-----CCeEEecccChHHHHHHHHh
Q 016648 179 EPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAFIGDGPY-REELEKMFTG-----MPAVFTGMLLGEELSQAYAS 250 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~~--k~~~~l~~a~~~~~~~~l~i~G~g~~-~~~l~~~~~~-----~~i~~~g~~~~~~~~~~~~~ 250 (385)
+++.++++.+.++.+- .-++...+++++.|+.+|++...+.. .+.+.+.+.. .+++|.+..+.++....++.
T Consensus 520 p~~~v~f~~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~~~~~~l~~~~~~~gi~~~r~~f~~~~~~~~~l~~~~~ 599 (723)
T 4gyw_A 520 PEDAIVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYAQNMGLPQNRIIFSPVAPKEEHVRRGQL 599 (723)
T ss_dssp CTTSEEEECCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTGGGHHHHHHHHHHTTCCGGGEEEEECCCHHHHHHHGGG
T ss_pred CCCCEEEEeCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHHHHHHHhcCCCcCeEEECCCCCHHHHHHHhCC
Confidence 4566777777766543 33566778888889999998875443 3344444432 25999999999999999999
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccC---CCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHH
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPED---QDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMG 327 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~---~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~ 327 (385)
+|+++-|.-+ +.+++.+||+.+|+|||+-....+..-+... .-|-.-++. .|.++..+...++.+|++.+.+++
T Consensus 600 ~Di~LDt~p~-~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia--~~~~~Y~~~a~~la~d~~~l~~lr 676 (723)
T 4gyw_A 600 ADVCLDTPLC-NGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIA--KNRQEYEDIAVKLGTDLEYLKKVR 676 (723)
T ss_dssp CSEEECCSSS-CCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBC--SSHHHHHHHHHHHHHCHHHHHHHH
T ss_pred CeEEeCCCCc-CCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999976544 4488999999999999976533322211000 001122333 489999999999999999999999
Q ss_pred HHHHHHHH---hCCHHHHHHHHHHHHHHHHHHHHH
Q 016648 328 QAARQEME---KYDWRAATRTIRNEQYNAAIWFWR 359 (385)
Q Consensus 328 ~~a~~~~~---~~s~~~~~~~~~~~iy~~~~~~~~ 359 (385)
++-++... -|+.+..++.+. ..|+++-.++.
T Consensus 677 ~~l~~~~~~s~l~d~~~~~~~le-~a~~~~w~r~~ 710 (723)
T 4gyw_A 677 GKVWKQRISSPLFNTKQYTMELE-RLYLQMWEHYA 710 (723)
T ss_dssp HHHHHHHHHSSTTCHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcCHHHHHHHHH-HHHHHHHHHHH
Confidence 88887753 299999999995 79998865443
No 55
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=98.50 E-value=7.9e-06 Score=75.23 Aligned_cols=144 Identities=13% Similarity=0.159 Sum_probs=90.9
Q ss_pred CCCCcEEEEEeecccc--ccHHHHHHHHHhCCCceEEE-EeCCcc---HHHHHHHHcCCCeEEecccChHHHHHHHH--h
Q 016648 179 EPDKPLIVHVGRLGVE--KSLDFLKRVMDRLPEARIAF-IGDGPY---REELEKMFTGMPAVFTGMLLGEELSQAYA--S 250 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~~--k~~~~l~~a~~~~~~~~l~i-~G~g~~---~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~ 250 (385)
++...+++..|+.... +-+..++++++.. +.++++ +|.... .+.+.+.. ..++.+.+++|+. ++|. .
T Consensus 269 ~~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~-~~~~lw~~~~~~~~~l~~~~~~~~-~~~~~v~~w~pq~---~vL~h~~ 343 (456)
T 2c1x_A 269 KPTSVVYISFGTVTTPPPAEVVALSEALEAS-RVPFIWSLRDKARVHLPEGFLEKT-RGYGMVVPWAPQA---EVLAHEA 343 (456)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHH-TCCEEEECCGGGGGGSCTTHHHHH-TTTEEEESCCCHH---HHHTSTT
T ss_pred CCcceEEEecCccccCCHHHHHHHHHHHHhc-CCeEEEEECCcchhhCCHHHHhhc-CCceEEecCCCHH---HHhcCCc
Confidence 3455667778877543 2244555666553 455554 443221 11122211 3478889999764 4588 6
Q ss_pred CcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcccccCCCC-CeeEeeCC--CCHHHHHHHHhHhhcCHHHH
Q 016648 251 GDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDIIPEDQDG-KIGYLFNP--GDLDDCLSKLEPLLYNQELR 323 (385)
Q Consensus 251 adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~~~~~~~~-~~g~~~~~--~~~~~l~~~i~~ll~~~~~~ 323 (385)
+|++| ..+..++++||+++|+|+|+-+..+ ....+ .+. +.|..++. -+.+++.++|.++++|++ .
T Consensus 344 ~~~fv----th~G~~S~~Eal~~GvP~i~~P~~~dQ~~Na~~l---~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~-~ 415 (456)
T 2c1x_A 344 VGAFV----THCGWNSLWESVAGGVPLICRPFFGDQRLNGRMV---EDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK-G 415 (456)
T ss_dssp EEEEE----ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHH---HHTSCCEEECGGGSCCHHHHHHHHHHHHHSHH-H
T ss_pred CCEEE----ecCCcchHHHHHHhCceEEecCChhhHHHHHHHH---HHHhCeEEEecCCCcCHHHHHHHHHHHHCCCc-H
Confidence 67887 4456789999999999999876532 12233 333 56666542 378999999999999875 5
Q ss_pred HHHHHHHHHHHH
Q 016648 324 ETMGQAARQEME 335 (385)
Q Consensus 324 ~~~~~~a~~~~~ 335 (385)
+++++++++..+
T Consensus 416 ~~~r~~a~~l~~ 427 (456)
T 2c1x_A 416 KKLRENLRALRE 427 (456)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 566666666543
No 56
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=98.41 E-value=0.0001 Score=68.01 Aligned_cols=130 Identities=14% Similarity=0.109 Sum_probs=82.5
Q ss_pred CCCCcEEEEEeecc-cc--ccHHHHHHHHHhCCCceEEEE-eCC--ccHHHHHHHHc-CCCeEEecccChHHHHHHHH--
Q 016648 179 EPDKPLIVHVGRLG-VE--KSLDFLKRVMDRLPEARIAFI-GDG--PYREELEKMFT-GMPAVFTGMLLGEELSQAYA-- 249 (385)
Q Consensus 179 ~~~~~~i~~~G~~~-~~--k~~~~l~~a~~~~~~~~l~i~-G~g--~~~~~l~~~~~-~~~i~~~g~~~~~~~~~~~~-- 249 (385)
++...+++..|+.. .. .-+..++++++.. +.+++++ |.+ ...+.+.+... ..++.+.+++|+.+ +|.
T Consensus 274 ~~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~-~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~v~~w~pq~~---vL~h~ 349 (463)
T 2acv_A 274 PDKSVVFLCFGSMGVSFGPSQIREIALGLKHS-GVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVE---VLAHK 349 (463)
T ss_dssp CTTCEEEEECCSSCCCCCHHHHHHHHHHHHHH-TCEEEEECCCCGGGSCTTHHHHHHHHCSEEEESSCCHHH---HHHST
T ss_pred CCCceEEEEeccccccCCHHHHHHHHHHHHhC-CCcEEEEECCCcccCChhHHHhhccCCCEEEEccCCHHH---HhCCC
Confidence 34456677788876 22 2255666666654 4666654 433 12122322220 24788889997654 576
Q ss_pred hCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCC----Ccc-cccCCCCCeeEee-C-------CCCHHHHHHHHhHh
Q 016648 250 SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDI-IPEDQDGKIGYLF-N-------PGDLDDCLSKLEPL 316 (385)
Q Consensus 250 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~----~e~-~~~~~~~~~g~~~-~-------~~~~~~l~~~i~~l 316 (385)
.+|++| ..+..++++||+++|+|+|+-...+- ... + +..+.|..+ . .-+.+++.++|.++
T Consensus 350 ~~~~fv----th~G~~s~~Eal~~GvP~i~~P~~~dQ~~Na~~lv---~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~l 422 (463)
T 2acv_A 350 AIGGFV----SHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLV---KEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDL 422 (463)
T ss_dssp TEEEEE----ECCCHHHHHHHHHTTCCEEECCCSTTHHHHHHHHH---HTSCCEEESCSSCCTTCCCCCHHHHHHHHHHH
T ss_pred ccCeEE----ecCCchhHHHHHHcCCCeeeccchhhhHHHHHHHH---HHcCeEEEEecccCCCCccccHHHHHHHHHHH
Confidence 577787 44567899999999999999765321 222 3 345677766 2 23789999999999
Q ss_pred hcC
Q 016648 317 LYN 319 (385)
Q Consensus 317 l~~ 319 (385)
+++
T Consensus 423 l~~ 425 (463)
T 2acv_A 423 MDK 425 (463)
T ss_dssp TCT
T ss_pred Hhc
Confidence 973
No 57
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=98.19 E-value=0.0014 Score=60.59 Aligned_cols=144 Identities=13% Similarity=0.024 Sum_probs=85.8
Q ss_pred CCCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEEE-eCCc--------------c-----HHHHHHHHcCCCeEEec
Q 016648 180 PDKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-GDGP--------------Y-----REELEKMFTGMPAVFTG 237 (385)
Q Consensus 180 ~~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i~-G~g~--------------~-----~~~l~~~~~~~~i~~~g 237 (385)
+...+++..|+... ..-+..++++++.. +.+++++ |.+. . .+.+.+..++.++.+.+
T Consensus 267 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~~-~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~ 345 (480)
T 2vch_A 267 LGSVLYVSFGSGGTLTCEQLNELALGLADS-EQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPF 345 (480)
T ss_dssp TTCEEEEECTTTCCCCHHHHHHHHHHHHHT-TCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHTTTTEEEEES
T ss_pred CCceEEEecccccCCCHHHHHHHHHHHHhc-CCcEEEEECCccccccccccccccccchhhhcCHHHHHHhCCCeEEEeC
Confidence 35567777888743 23355666666665 4566554 4321 0 01122222233356667
Q ss_pred ccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC----CCcc-cccCCCCCeeEeeCC-----CCHH
Q 016648 238 MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG----IPDI-IPEDQDGKIGYLFNP-----GDLD 307 (385)
Q Consensus 238 ~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~----~~e~-~~~~~~~~~g~~~~~-----~~~~ 307 (385)
++|+. .+|+.+++.++-+ .|.-++++||+++|+|+|+-...+ .... + +.-+.|..++. -+.+
T Consensus 346 w~Pq~---~vL~h~~v~~fvt--HgG~~S~~Eal~~GvP~i~~P~~~DQ~~na~~l~---~~~G~g~~l~~~~~~~~~~~ 417 (480)
T 2vch_A 346 WAPQA---QVLAHPSTGGFLT--HCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLS---EDIRAALRPRAGDDGLVRRE 417 (480)
T ss_dssp CCCHH---HHHHSTTEEEEEE--CCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH---HTTCCEECCCCCTTSCCCHH
T ss_pred ccCHH---HHhCCCCcCeEEe--cccchhHHHHHHcCCCEEeccccccchHHHHHHH---HHhCeEEEeecccCCccCHH
Confidence 99765 5699999643333 355778999999999999976542 1122 2 24456665543 3789
Q ss_pred HHHHHHhHhhcCHHHHHHHHHHHHHH
Q 016648 308 DCLSKLEPLLYNQELRETMGQAARQE 333 (385)
Q Consensus 308 ~l~~~i~~ll~~~~~~~~~~~~a~~~ 333 (385)
++.++|.++++++ .-.++++++++.
T Consensus 418 ~l~~av~~vl~~~-~~~~~r~~a~~l 442 (480)
T 2vch_A 418 EVARVVKGLMEGE-EGKGVRNKMKEL 442 (480)
T ss_dssp HHHHHHHHHHTST-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-chHHHHHHHHHH
Confidence 9999999999843 223444444444
No 58
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=98.18 E-value=4.3e-05 Score=69.85 Aligned_cols=199 Identities=13% Similarity=0.003 Sum_probs=110.3
Q ss_pred HHHhCCeEEEcChhHHHH-----HHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeecccc-
Q 016648 121 LHRAADLTLVPSVAIGKD-----LEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVE- 194 (385)
Q Consensus 121 ~~~~ad~ii~~s~~~~~~-----~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~- 194 (385)
....++.+++.|-...+. ++... .++..|..-.....-.......+...-+...+++..+++..|+....
T Consensus 212 ~~~~~~~vl~ns~~eLE~~~~~~~~~~~----~~v~~vGPl~~~~~~~~~~~~~~~~~wLd~~~~~~vVyvsfGS~~~~~ 287 (454)
T 3hbf_A 212 ELPRANAVAINSFATIHPLIENELNSKF----KLLLNVGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPP 287 (454)
T ss_dssp HGGGSSCEEESSCGGGCHHHHHHHHTTS----SCEEECCCHHHHSCCSCCCCTTCHHHHHHTSCTTCEEEEECCSSCCCC
T ss_pred hhccCCEEEECChhHhCHHHHHHHHhcC----CCEEEECCcccccccccccchHHHHHHHhcCCCCceEEEecCCCCcCC
Confidence 456799999988665443 22221 24444432111000000111111222222223455667778877542
Q ss_pred -ccHHHHHHHHHhCCCceEEEEeCCccHH----HHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHH
Q 016648 195 -KSLDFLKRVMDRLPEARIAFIGDGPYRE----ELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLE 269 (385)
Q Consensus 195 -k~~~~l~~a~~~~~~~~l~i~G~g~~~~----~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~E 269 (385)
.-+..++++++.. +.+++++-.+...+ .+.+.. ..++.+.+++|+. .++..+++.++-+ .+.-++++|
T Consensus 288 ~~~~~el~~~l~~~-~~~flw~~~~~~~~~lp~~~~~~~-~~~~~vv~w~Pq~---~vL~h~~v~~fvt--H~G~~S~~E 360 (454)
T 3hbf_A 288 PHELTALAESLEEC-GFPFIWSFRGDPKEKLPKGFLERT-KTKGKIVAWAPQV---EILKHSSVGVFLT--HSGWNSVLE 360 (454)
T ss_dssp HHHHHHHHHHHHHH-CCCEEEECCSCHHHHSCTTHHHHT-TTTEEEESSCCHH---HHHHSTTEEEEEE--CCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCeEEEEeCCcchhcCCHhHHhhc-CCceEEEeeCCHH---HHHhhcCcCeEEe--cCCcchHHH
Confidence 2355566666654 45665543322211 121111 2478888999864 5688999544433 345678999
Q ss_pred HHhcCCcEEEecCCC----CCcccccCCCC-CeeEeeCC--CCHHHHHHHHhHhhcCHHHHHHHHHHHHHHH
Q 016648 270 AMSSGIPVVGVRAGG----IPDIIPEDQDG-KIGYLFNP--GDLDDCLSKLEPLLYNQELRETMGQAARQEM 334 (385)
Q Consensus 270 a~a~G~PvI~s~~~~----~~e~~~~~~~~-~~g~~~~~--~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~ 334 (385)
++++|+|+|+-...+ ....+ .+. +.|..++. -+.+++.+++.++++++ ..+++++++++..
T Consensus 361 al~~GvP~i~~P~~~DQ~~Na~~v---~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~-~~~~~r~~a~~l~ 428 (454)
T 3hbf_A 361 CIVGGVPMISRPFFGDQGLNTILT---ESVLEIGVGVDNGVLTKESIKKALELTMSSE-KGGIMRQKIVKLK 428 (454)
T ss_dssp HHHHTCCEEECCCSTTHHHHHHHH---HTTSCSEEECGGGSCCHHHHHHHHHHHHSSH-HHHHHHHHHHHHH
T ss_pred HHHcCCCEecCcccccHHHHHHHH---HHhhCeeEEecCCCCCHHHHHHHHHHHHCCC-hHHHHHHHHHHHH
Confidence 999999999976532 12233 332 56666653 47899999999999885 2345666665553
No 59
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=98.07 E-value=7.7e-05 Score=69.25 Aligned_cols=144 Identities=12% Similarity=0.123 Sum_probs=92.1
Q ss_pred CCcEEEEEeeccc--cccHHHHHHHHHhCCCceEEEE-eCCc-------cHHHHHHHHcCCCeEEecccChHHHHHHHHh
Q 016648 181 DKPLIVHVGRLGV--EKSLDFLKRVMDRLPEARIAFI-GDGP-------YREELEKMFTGMPAVFTGMLLGEELSQAYAS 250 (385)
Q Consensus 181 ~~~~i~~~G~~~~--~k~~~~l~~a~~~~~~~~l~i~-G~g~-------~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~ 250 (385)
...+++..|+... ...+..++++++.. +.+++++ |... ..+.+.+.. ..++.+.+++|+.+ +|+.
T Consensus 295 ~~vv~vs~GS~~~~~~~~~~~~~~~l~~~-~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~v~~~~pq~~---~L~h 369 (482)
T 2pq6_A 295 GSVVYVNFGSTTVMTPEQLLEFAWGLANC-KKSFLWIIRPDLVIGGSVIFSSEFTNEI-ADRGLIASWCPQDK---VLNH 369 (482)
T ss_dssp TCEEEEECCSSSCCCHHHHHHHHHHHHHT-TCEEEEECCGGGSTTTGGGSCHHHHHHH-TTTEEEESCCCHHH---HHTS
T ss_pred CceEEEecCCcccCCHHHHHHHHHHHHhc-CCcEEEEEcCCccccccccCcHhHHHhc-CCCEEEEeecCHHH---HhcC
Confidence 4556777787643 12255666777664 4666654 4221 122333322 34889999998754 6877
Q ss_pred CcE--EEEcCCCCCCcHHHHHHHhcCCcEEEecCCCC----CcccccCCCCCeeEeeC-CCCHHHHHHHHhHhhcCHHHH
Q 016648 251 GDV--FVMPSESETLGLVVLEAMSSGIPVVGVRAGGI----PDIIPEDQDGKIGYLFN-PGDLDDCLSKLEPLLYNQELR 323 (385)
Q Consensus 251 adi--~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~----~e~~~~~~~~~~g~~~~-~~~~~~l~~~i~~ll~~~~~~ 323 (385)
+++ +| ..+..++++||+++|+|+|+-...+- ...+. +..+.|..++ .-+.+++.++|.++++|++ .
T Consensus 370 ~~~~~~v----th~G~~s~~Eal~~GvP~i~~P~~~dQ~~na~~~~--~~~G~g~~l~~~~~~~~l~~~i~~ll~~~~-~ 442 (482)
T 2pq6_A 370 PSIGGFL----THCGWNSTTESICAGVPMLCWPFFADQPTDCRFIC--NEWEIGMEIDTNVKREELAKLINEVIAGDK-G 442 (482)
T ss_dssp TTEEEEE----ECCCHHHHHHHHHHTCCEEECCCSTTHHHHHHHHH--HTSCCEEECCSSCCHHHHHHHHHHHHTSHH-H
T ss_pred CCCCEEE----ecCCcchHHHHHHcCCCEEecCcccchHHHHHHHH--HHhCEEEEECCCCCHHHHHHHHHHHHcCCc-H
Confidence 666 55 34567899999999999999876431 12220 1345666664 2389999999999999886 4
Q ss_pred HHHHHHHHHHHHh
Q 016648 324 ETMGQAARQEMEK 336 (385)
Q Consensus 324 ~~~~~~a~~~~~~ 336 (385)
+++++++++..+.
T Consensus 443 ~~~r~~a~~l~~~ 455 (482)
T 2pq6_A 443 KKMKQKAMELKKK 455 (482)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6677777766543
No 60
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=97.99 E-value=9.7e-05 Score=72.31 Aligned_cols=217 Identities=13% Similarity=0.014 Sum_probs=118.7
Q ss_pred HHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCC---ChhhHhhhcCCCCCCcEEEEEeecccc---
Q 016648 121 LHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFR---SSEMRWRLSNGEPDKPLIVHVGRLGVE--- 194 (385)
Q Consensus 121 ~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~G~~~~~--- 194 (385)
.....|.+++.|+...+.+.+.++.+..++.....+-....+..... ....+.++. .++++.+|+|.-++...
T Consensus 475 ~~~~~D~~~~~s~~~~~~~~~~f~~~~~~i~~~G~PR~D~l~~~~~~~~~~~~~~~~~~-~~~~kk~ILyaPT~r~~~~~ 553 (729)
T 3l7i_A 475 ETSRWDYLISPNRYSTEIFRSAFWMDEERILEIGYPRNDVLVNRANDQEYLDEIRTHLN-LPSDKKVIMYAPTWRDDEFV 553 (729)
T ss_dssp HHTTCSEEEESSHHHHHHHHHHTCCCGGGEEESCCGGGHHHHHSTTCHHHHHHHHHHTT-CCSSCEEEEECCCCCGGGCC
T ss_pred hhccCCEEEeCCHHHHHHHHHHhCCCcceEEEcCCCchHHHhcccchHHHHHHHHHHhC-CCCCCeEEEEeeeeeCCccc
Confidence 45668999999999999998888765555554443221111111111 112222332 35678999999877543
Q ss_pred ----------ccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHc----CCCeEEecccChHHHHHHHHhCcEEEEcCCC
Q 016648 195 ----------KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT----GMPAVFTGMLLGEELSQAYASGDVFVMPSES 260 (385)
Q Consensus 195 ----------k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~----~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~ 260 (385)
.+++.+.+.+. ++..+++-.. +. +..... ...+.... +..++.++|..||++|.-
T Consensus 554 ~~~~~~~~~~~~~~~l~~~l~--~~~~li~r~H-p~---~~~~~~~~~~~~~~~~~~--~~~di~~ll~~aD~lITD--- 622 (729)
T 3l7i_A 554 SKGKYLFELKIDLDNLYKELG--DDYVILLRMH-YL---ISNALDLSGYENFAIDVS--NYNDVSELFLISDCLITD--- 622 (729)
T ss_dssp GGGSSCCCCTTCHHHHHHHHT--TTEEEEECCC-HH---HHTTCCCTTCTTTEEECT--TCSCHHHHHHTCSEEEES---
T ss_pred cccccccchhhHHHHHHHHcC--CCeEEEEecC-cc---hhccccccccCCcEEeCC--CCcCHHHHHHHhCEEEee---
Confidence 23444444443 3555555432 11 111111 11232222 236889999999999954
Q ss_pred CCCcHHHHHHHhcCCcEEEecCCCCCcccc-------cCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHH
Q 016648 261 ETLGLVVLEAMSSGIPVVGVRAGGIPDIIP-------EDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQE 333 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~-------~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~ 333 (385)
++..++|++.+++|||..... ..++.. +..+...|-++. |.++|.++|.....+++...+..++-++.
T Consensus 623 --ySSv~fD~~~l~kPiif~~~D-~~~Y~~~~rg~y~d~~~~~pg~~~~--~~~eL~~~i~~~~~~~~~~~~~~~~~~~~ 697 (729)
T 3l7i_A 623 --YSSVMFDYGILKRPQFFFAYD-IDKYDKGLRGFYMNYMEDLPGPIYT--EPYGLAKELKNLDKVQQQYQEKIDAFYDR 697 (729)
T ss_dssp --SCTHHHHHGGGCCCEEEECTT-TTTTTSSCCSBSSCTTSSSSSCEES--SHHHHHHHHTTHHHHHHHTHHHHHHHHHH
T ss_pred --chHHHHhHHhhCCCEEEecCC-HHHHhhccCCcccChhHhCCCCeEC--CHHHHHHHHhhhhccchhHHHHHHHHHHH
Confidence 477899999999999976221 112210 001223344444 89999999998765443333322222222
Q ss_pred HHhCCHHHHHHHHHHHHHHHH
Q 016648 334 MEKYDWRAATRTIRNEQYNAA 354 (385)
Q Consensus 334 ~~~~s~~~~~~~~~~~iy~~~ 354 (385)
.-.|.-...++++.+.+++..
T Consensus 698 ~~~~~dg~as~ri~~~i~~~~ 718 (729)
T 3l7i_A 698 FCSVDNGKASQYIGDLIHKDI 718 (729)
T ss_dssp HSTTCCSCHHHHHHHHHHHHH
T ss_pred hCCccCChHHHHHHHHHHhcC
Confidence 222333456666665555544
No 61
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=97.52 E-value=0.0018 Score=57.19 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=66.4
Q ss_pred CCcEEEEEee-ccccccH--HHHHHHHHhC--CCceEEEEeCCccHHHHHHHHcCC------C-eEEecccChHHHHHHH
Q 016648 181 DKPLIVHVGR-LGVEKSL--DFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM------P-AVFTGMLLGEELSQAY 248 (385)
Q Consensus 181 ~~~~i~~~G~-~~~~k~~--~~l~~a~~~~--~~~~l~i~G~g~~~~~l~~~~~~~------~-i~~~g~~~~~~~~~~~ 248 (385)
++.+++..|. ..+.|.+ +.+.++++.+ .+++++++|...+.+..++..... + +.+.|..+-.++..++
T Consensus 180 ~~~i~l~pga~~~~~k~wp~~~~~~l~~~L~~~~~~vvl~g~~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sl~e~~ali 259 (348)
T 1psw_A 180 RPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILI 259 (348)
T ss_dssp SCEEEEECCCTTCGGGSCCHHHHHHHHHHHHHTTCEEEECCCGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHHHHHH
T ss_pred CcEEEEECCCCccccCCCCHHHHHHHHHHHHHCCCeEEEEeChhhHHHHHHHHHhhhhccccceEeccCcCCHHHHHHHH
Confidence 4456677776 4455553 3666665544 378999998766665555554332 3 4567888889999999
Q ss_pred HhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 249 ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 249 ~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
+.||++|.... |..-+ |.++|+|+|+--
T Consensus 260 ~~a~l~I~~Ds----g~~Hl-Aaa~g~P~v~lf 287 (348)
T 1psw_A 260 AACKAIVTNDS----GLMHV-AAALNRPLVALY 287 (348)
T ss_dssp HTSSEEEEESS----HHHHH-HHHTTCCEEEEE
T ss_pred HhCCEEEecCC----HHHHH-HHHcCCCEEEEE
Confidence 99999997652 44444 999999999753
No 62
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=97.46 E-value=0.0001 Score=60.20 Aligned_cols=46 Identities=9% Similarity=0.105 Sum_probs=38.5
Q ss_pred CeEEecccChHHHHHHHH-hCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 232 PAVFTGMLLGEELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 232 ~i~~~g~~~~~~~~~~~~-~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
++...+|+ +++..+|. .||++| .-+..++++|++++|+|.|.-..+
T Consensus 115 ~v~v~~f~--~~m~~~l~~~AdlvI----shaGagTv~Eal~~G~P~IvVP~~ 161 (224)
T 2jzc_A 115 KVIGFDFS--TKMQSIIRDYSDLVI----SHAGTGSILDSLRLNKPLIVCVND 161 (224)
T ss_dssp EEEECCSS--SSHHHHHHHHCSCEE----ESSCHHHHHHHHHTTCCCCEECCS
T ss_pred eEEEeecc--chHHHHHHhcCCEEE----ECCcHHHHHHHHHhCCCEEEEcCc
Confidence 45667777 89999999 999999 445688999999999999987654
No 63
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=97.23 E-value=0.011 Score=52.09 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=70.4
Q ss_pred CCcEEEEEeecccccc--HHHHHHHHHhC--CCceEEEEeCCccHHHHHHHHcCC---CeEEecccChHHHHHHHHhCcE
Q 016648 181 DKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFIGDGPYREELEKMFTGM---PAVFTGMLLGEELSQAYASGDV 253 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~--~~~l~~a~~~~--~~~~l~i~G~g~~~~~l~~~~~~~---~i~~~g~~~~~~~~~~~~~adi 253 (385)
++.+.+..|.-...|. .+.+.++++.+ .+.+++++|...+.+..++..... .+.+.|..+-.++..+++.||+
T Consensus 185 ~~~i~i~pga~~~~k~wp~~~~~~l~~~l~~~g~~vvl~g~~~e~~~~~~i~~~~~~~~~~l~g~~sl~e~~ali~~a~~ 264 (349)
T 3tov_A 185 DILIGFNIGSAVPEKRWPAERFAHVADYFGRLGYKTVFFGGPMDLEMVQPVVEQMETKPIVATGKFQLGPLAAAMNRCNL 264 (349)
T ss_dssp CCEEEEECCCSSGGGCCCHHHHHHHHHHHHHHTCEEEECCCTTTHHHHHHHHHTCSSCCEECTTCCCHHHHHHHHHTCSE
T ss_pred CCEEEEeCCCCCccCCCCHHHHHHHHHHHHhCCCeEEEEeCcchHHHHHHHHHhcccccEEeeCCCCHHHHHHHHHhCCE
Confidence 4455666776544554 34555555544 368888999777766666554432 3667788888999999999999
Q ss_pred EEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCccc
Q 016648 254 FVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDII 289 (385)
Q Consensus 254 ~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~ 289 (385)
+|..-. |..-+ |.++|+|+|+--.+..+...
T Consensus 265 ~i~~Ds----G~~Hl-Aaa~g~P~v~lfg~t~p~~~ 295 (349)
T 3tov_A 265 LITNDS----GPMHV-GISQGVPIVALYGPSNPFFY 295 (349)
T ss_dssp EEEESS----HHHHH-HHTTTCCEEEECSSCCHHHH
T ss_pred EEECCC----CHHHH-HHhcCCCEEEEECCCCcccc
Confidence 997632 55556 89999999986444333333
No 64
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=97.05 E-value=0.016 Score=50.50 Aligned_cols=134 Identities=13% Similarity=0.094 Sum_probs=80.8
Q ss_pred CCcEEEEEeecccccc--HHHHHHHHHhC--CCceEEEE-eCCccHHHHHHHHcC-CCeEEecccChHHHHHHHHhCcEE
Q 016648 181 DKPLIVHVGRLGVEKS--LDFLKRVMDRL--PEARIAFI-GDGPYREELEKMFTG-MPAVFTGMLLGEELSQAYASGDVF 254 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~--~~~l~~a~~~~--~~~~l~i~-G~g~~~~~l~~~~~~-~~i~~~g~~~~~~~~~~~~~adi~ 254 (385)
++.+++..|.-...|. .+.+.++++.+ .+.++++. |...+.+..++.... .++.+.|..+-.|+..+++.||++
T Consensus 178 ~~~i~l~pga~~~~k~wp~~~~~~l~~~L~~~~~~vvl~~g~~~e~~~~~~i~~~~~~~~l~g~~sl~el~ali~~a~l~ 257 (326)
T 2gt1_A 178 GEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKRLAEGFAYVEVLPKMSLEGVARVLAGAKFV 257 (326)
T ss_dssp TSEEEEECCCSSGGGSCCHHHHHHHHHHTTTTCCEEEECCSSHHHHHHHHHHHTTCTTEEECCCCCHHHHHHHHHTCSEE
T ss_pred CCEEEEEeCCCCccccCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHHHhhCCcccccCCCCHHHHHHHHHhCCEE
Confidence 3455666776555555 45777777766 46788887 533344444444433 256778888889999999999999
Q ss_pred EEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeE-----eeCCCCHHHHHHHHhHhhcC
Q 016648 255 VMPSESETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGY-----LFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 255 v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~-----~~~~~~~~~l~~~i~~ll~~ 319 (385)
|..-. |..-+ |.++|+|+|+--.+..+....+.......+ ....-+++++.+++.+++++
T Consensus 258 I~~DS----G~~Hl-Aaa~g~P~v~lfg~t~p~~~~P~~~~~~~~~~~~~cm~~I~~~~V~~~i~~~l~~ 322 (326)
T 2gt1_A 258 VSVDT----GLSHL-TAALDRPNITVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKQFIEENAEK 322 (326)
T ss_dssp EEESS----HHHHH-HHHTTCCEEEEESSSCHHHHCCCSSSEEEEECGGGCGGGCCHHHHHHHHHHTTTT
T ss_pred EecCC----cHHHH-HHHcCCCEEEEECCCChhhcCCCCCCceEecCCcccccCCCHHHHHHHHHHHHHH
Confidence 97642 66666 777999999753222222211101111101 11223677888888777754
No 65
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=96.11 E-value=0.052 Score=52.37 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=87.1
Q ss_pred CCCcEEEEEeeccccccHHH-HHHHHH-------h-------------CCCceEEEEeCCc---c-HHHHHH----HH--
Q 016648 180 PDKPLIVHVGRLGVEKSLDF-LKRVMD-------R-------------LPEARIAFIGDGP---Y-REELEK----MF-- 228 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~~~~-l~~a~~-------~-------------~~~~~l~i~G~g~---~-~~~l~~----~~-- 228 (385)
++....+++-|+...|...+ ++..+. . .....+++.|... . .+.+.+ ..
T Consensus 598 p~sLfdvq~KR~heYKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~ 677 (879)
T 1ygp_A 598 DDTLFDMQVKRIHEYKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADI 677 (879)
T ss_dssp GGCEEEEEESCCCGGGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred CCeeeeeeeehhhHhHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHH
Confidence 45778899999999999777 444332 2 2346677777422 1 112211 11
Q ss_pred -cC-------CCeEEecccChHHHHHHHHhCcEEEEcCC--CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCee
Q 016648 229 -TG-------MPAVFTGMLLGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIG 298 (385)
Q Consensus 229 -~~-------~~i~~~g~~~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g 298 (385)
.. .+|.|+....-.-...++..||+-...|. .|+.|++=+-+|.-|.+.|++-.|...|+.+.. ..+|+
T Consensus 678 iN~Dp~v~~~LKVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDGanvEi~e~v-G~eN~ 756 (879)
T 1ygp_A 678 VNNDESIEHLLKVVFVADYNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDGANVEITREI-GEDNV 756 (879)
T ss_dssp HTTCGGGTTSEEEEEETTCCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCTHHHHHHHHH-CGGGS
T ss_pred hccChhhCCceEEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccchhHHHHHHc-CcccE
Confidence 11 15889988877888889999999998776 699999999999999999999888888887221 24577
Q ss_pred EeeCC
Q 016648 299 YLFNP 303 (385)
Q Consensus 299 ~~~~~ 303 (385)
+++..
T Consensus 757 fiFG~ 761 (879)
T 1ygp_A 757 FLFGN 761 (879)
T ss_dssp EEESC
T ss_pred EEccC
Confidence 77764
No 66
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=89.10 E-value=5 Score=29.08 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=67.2
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh---CcEEEEcCCC-C-CCcHHHHHHHh--cCCcEEEe
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSES-E-TLGLVVLEAMS--SGIPVVGV 280 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~---adi~v~ps~~-e-~~~~~~~Ea~a--~G~PvI~s 280 (385)
..+++|+.+.+. ...+.......+..+...-+.++....+.. .|++++-... + .-|..+++.+. ..+|+|.-
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~l 84 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGGWYPDLILMDIELGEGMDGVQTALAIQQISELPVVFL 84 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcCCCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 356777775543 344555555445555555555777776654 4888775443 3 44666666554 47888753
Q ss_pred -cCCC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 281 -RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 281 -~~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.... ..+.. ..|..+++..|-+.+++.++|..++.
T Consensus 85 s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~ 123 (140)
T 3h5i_A 85 TAHTEPAVVEKIR---SVTAYGYVMKSATEQVLITIVEMALR 123 (140)
T ss_dssp ESSSSCCCCGGGG---GSCEEEEEETTCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHH---hCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3222 23344 56888999999999999999988864
No 67
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=88.45 E-value=5.4 Score=28.87 Aligned_cols=107 Identities=14% Similarity=0.161 Sum_probs=64.2
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcEEE
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 279 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~ 279 (385)
..+++++.+.+. ...+.......++.+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|.
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 86 (142)
T 3cg4_A 7 KGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGFSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVM 86 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCCCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEE
Confidence 456677765442 334444444334444444444666666665 467776543 23446677777654 467764
Q ss_pred e-cCCC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 280 V-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 280 s-~~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
- .... ..+.+ ..|..+++..+-+.+++.+.|..++.
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~ 126 (142)
T 3cg4_A 87 LTAKNAPDAKMIGL---QEYVVDYITKPFDNEDLIEKTTFFMG 126 (142)
T ss_dssp EECTTCCCCSSTTG---GGGEEEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHH---hcCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3 3322 23334 55678899999999999999988763
No 68
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=87.80 E-value=3 Score=31.26 Aligned_cols=72 Identities=17% Similarity=0.153 Sum_probs=40.1
Q ss_pred HHHHHhCcEEEEcCCCCCCcHHHHH---HHhcCCcEEEecCC----CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 245 SQAYASGDVFVMPSESETLGLVVLE---AMSSGIPVVGVRAG----GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 245 ~~~~~~adi~v~ps~~e~~~~~~~E---a~a~G~PvI~s~~~----~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
.+.+..||++|.-.. +.-+.+.+| |.+.|+||++-..+ ...-.+.+..++..-.+.+..+ +++.+.|.+.+
T Consensus 63 ~~~i~~aD~vvA~l~-~~d~Gt~~EiG~A~algkPV~~l~~~~~~~~ls~mi~G~~~~~~~~~~~Y~~-~el~~il~~f~ 140 (152)
T 4fyk_A 63 LNWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCLFRPQSGRVLSAMIRGAADGSRFQVWDYAE-GEVETMLDRYF 140 (152)
T ss_dssp HHHHHHCSEEEEECS-SCCHHHHHHHHHHHHTTCCEEEEECGGGSCCCCHHHHHHCCSSSEEEEECCT-TCHHHHHHHHH
T ss_pred HHHHHHCCEEEEeCC-CCCCCHHHHHHHHHHcCCeEEEEEeCCccchhHHHHcCCCCCCeEEEEEecH-HHHHHHHHHHH
Confidence 467999999987433 333444444 78899999983221 2221221112222233344445 77777777765
Q ss_pred c
Q 016648 318 Y 318 (385)
Q Consensus 318 ~ 318 (385)
+
T Consensus 141 ~ 141 (152)
T 4fyk_A 141 E 141 (152)
T ss_dssp C
T ss_pred H
Confidence 4
No 69
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=86.95 E-value=4.6 Score=29.32 Aligned_cols=107 Identities=16% Similarity=0.197 Sum_probs=66.5
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH----hCcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA----SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV 280 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~----~adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s 280 (385)
.+++|+.+.+. ...+.......+......-+.++....+. ..|++++-.. .+.-|..+++.+. ..+|+|.-
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 83 (143)
T 3jte_A 4 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVIIL 83 (143)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEE
Confidence 46777775543 34455555544444444444467666665 4688777544 3344556665554 36777743
Q ss_pred -cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 281 -RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 -~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
..... .+.+ ..|..+++..|.+.+++.++|..++..
T Consensus 84 s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~~ 123 (143)
T 3jte_A 84 TGHGDLDNAILAM---KEGAFEYLRKPVTAQDLSIAINNAINR 123 (143)
T ss_dssp ECTTCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHH---HhCcceeEeCCCCHHHHHHHHHHHHHH
Confidence 33322 2334 567889999999999999999988754
No 70
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=86.95 E-value=3.6 Score=30.70 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=46.9
Q ss_pred HHHHHHHH----hCcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEec-CCCC---CcccccCCCCCeeEeeCCCCHHHH
Q 016648 242 EELSQAYA----SGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDC 309 (385)
Q Consensus 242 ~~~~~~~~----~adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s~-~~~~---~e~~~~~~~~~~g~~~~~~~~~~l 309 (385)
++....+. ..|++++-.. .+.-|..+++.+. ..+|+|... .... .+.+ ..|..+++..+.+.+++
T Consensus 71 ~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l 147 (157)
T 3hzh_A 71 EEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCL---IKGAKTFIVKPLDRAKV 147 (157)
T ss_dssp HHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCHHHHHHHH---HTTCSEEEESSCCHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcHHHHHHHH---HcCCCEEEeCCCCHHHH
Confidence 45554444 3477776544 3334556665554 367887543 3222 2334 56778899999999999
Q ss_pred HHHHhHhhc
Q 016648 310 LSKLEPLLY 318 (385)
Q Consensus 310 ~~~i~~ll~ 318 (385)
.++|.+++.
T Consensus 148 ~~~i~~~l~ 156 (157)
T 3hzh_A 148 LQRVMSVFV 156 (157)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhc
Confidence 999998764
No 71
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=86.58 E-value=8.9 Score=30.90 Aligned_cols=76 Identities=11% Similarity=-0.005 Sum_probs=47.1
Q ss_pred CceEEEEeCCccHHHHHHHHcCCCeEEec-ccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCCc
Q 016648 209 EARIAFIGDGPYREELEKMFTGMPAVFTG-MLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIPD 287 (385)
Q Consensus 209 ~~~l~i~G~g~~~~~l~~~~~~~~i~~~g-~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~e 287 (385)
+.++.++... ..+.++.+....++.+.. ....+ .+..+|+++..+..+.....+.++...|+||-..|.+...+
T Consensus 54 GA~VtVvap~-~~~~l~~l~~~~~i~~i~~~~~~~----dL~~adLVIaAT~d~~~N~~I~~~ak~gi~VNvvD~p~~~~ 128 (223)
T 3dfz_A 54 GAAITVVAPT-VSAEINEWEAKGQLRVKRKKVGEE----DLLNVFFIVVATNDQAVNKFVKQHIKNDQLVNMASSFSDGN 128 (223)
T ss_dssp CCCEEEECSS-CCHHHHHHHHTTSCEEECSCCCGG----GSSSCSEEEECCCCTHHHHHHHHHSCTTCEEEC-----CCS
T ss_pred CCEEEEECCC-CCHHHHHHHHcCCcEEEECCCCHh----HhCCCCEEEECCCCHHHHHHHHHHHhCCCEEEEeCCcccCe
Confidence 5677777653 335577777666666543 33323 35789999887766666667777766899998888776655
Q ss_pred cc
Q 016648 288 II 289 (385)
Q Consensus 288 ~~ 289 (385)
++
T Consensus 129 f~ 130 (223)
T 3dfz_A 129 IQ 130 (223)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 72
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=86.40 E-value=2.6 Score=30.90 Aligned_cols=107 Identities=10% Similarity=0.122 Sum_probs=65.3
Q ss_pred CceEEEEeCCc-cHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcEEE
Q 016648 209 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 279 (385)
Q Consensus 209 ~~~l~i~G~g~-~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~ 279 (385)
..+++++.+.+ ....+.......++.+...-+.++....+.. .|++|+-.. .+.-|..+++.+.. ++|+|.
T Consensus 8 ~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ 87 (147)
T 2zay_A 8 WWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKKNPQTASIPVIA 87 (147)
T ss_dssp CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCCCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEE
Confidence 45677777544 3344444444334444444444666665554 688776544 33456777777764 578775
Q ss_pred e-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 280 V-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 280 s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
- ..... .+.+ ..|..+++..+.+.+++.++|..++.
T Consensus 88 ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~L~~~i~~~~~ 127 (147)
T 2zay_A 88 LSGRATAKEEAQLL---DMGFIDFIAKPVNAIRLSARIKRVLK 127 (147)
T ss_dssp EESSCCHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHH---hCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4 33322 1223 45778899999999999999988865
No 73
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=86.02 E-value=6.8 Score=28.82 Aligned_cols=107 Identities=13% Similarity=0.130 Sum_probs=64.6
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh---CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe-
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 280 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~---adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s- 280 (385)
.+++|+.+.+. ...+...... +..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+|..
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 83 (151)
T 3kcn_A 5 ERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSDPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLT 83 (151)
T ss_dssp CEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSCCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCCCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEE
Confidence 56777776543 3344444443 4444444445676666654 388876544 3444666666554 36777643
Q ss_pred cCCC---CCcccccCCCC-CeeEeeCCCCHHHHHHHHhHhhcCH
Q 016648 281 RAGG---IPDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYNQ 320 (385)
Q Consensus 281 ~~~~---~~e~~~~~~~~-~~g~~~~~~~~~~l~~~i~~ll~~~ 320 (385)
.... ..+.+ ..| ..+++..|-+.+++.++|..++...
T Consensus 84 ~~~~~~~~~~~~---~~g~~~~~l~KP~~~~~L~~~i~~~l~~~ 124 (151)
T 3kcn_A 84 GNQDLTTAMEAV---NEGQVFRFLNKPCQMSDIKAAINAGIKQY 124 (151)
T ss_dssp CGGGHHHHHHHH---HHTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---HcCCeeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 3222 12333 445 6789999999999999999987643
No 74
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=85.87 E-value=4.2 Score=29.34 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=43.4
Q ss_pred HHHHHHHHh--CcEEEEcCCCCCCcHHHHHHHh--c-CCcEEEe-cCCCC---CcccccCCCCCeeEeeCCC-CHHHHHH
Q 016648 242 EELSQAYAS--GDVFVMPSESETLGLVVLEAMS--S-GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPG-DLDDCLS 311 (385)
Q Consensus 242 ~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a--~-G~PvI~s-~~~~~---~e~~~~~~~~~~g~~~~~~-~~~~l~~ 311 (385)
++....+.. .|++++| +.-|..+++.+. . .+|+|.- ..... .+.+ ..|..+++..+- +.+++.+
T Consensus 52 ~~al~~l~~~~~dlvi~~---~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~kP~~~~~~l~~ 125 (137)
T 2pln_A 52 EDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSDNPTSEEEVHAF---EQGADDYIAKPYRSIKALVA 125 (137)
T ss_dssp HHHHHHHHHSCCSEEEEC---STTHHHHHHHHHHHSTTSEEEEEESSCCHHHHHHHH---HTTCSEEEESSCSCHHHHHH
T ss_pred HHHHHHHHcCCCCEEEEc---CccHHHHHHHHHhcCCCccEEEEeCCCCHHHHHHHH---HcCCceeeeCCCCCHHHHHH
Confidence 444444433 4666622 223455555554 3 6777753 33322 2333 567788999999 9999999
Q ss_pred HHhHhhcC
Q 016648 312 KLEPLLYN 319 (385)
Q Consensus 312 ~i~~ll~~ 319 (385)
+|..++..
T Consensus 126 ~i~~~~~~ 133 (137)
T 2pln_A 126 RIEARLRF 133 (137)
T ss_dssp HHHHHTC-
T ss_pred HHHHHHhh
Confidence 99988754
No 75
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=85.81 E-value=6.3 Score=28.24 Aligned_cols=106 Identities=13% Similarity=0.108 Sum_probs=66.0
Q ss_pred ceEEEEeCCc-cHHHHHHHHcCCCe--EEecccChHHHHHHHHh---------CcEEEEcCCC-CCCcHHHHHHHh----
Q 016648 210 ARIAFIGDGP-YREELEKMFTGMPA--VFTGMLLGEELSQAYAS---------GDVFVMPSES-ETLGLVVLEAMS---- 272 (385)
Q Consensus 210 ~~l~i~G~g~-~~~~l~~~~~~~~i--~~~g~~~~~~~~~~~~~---------adi~v~ps~~-e~~~~~~~Ea~a---- 272 (385)
.+++++.+.+ ....+.......+. .+...-+.++....+.. .|++++-... +.-|..+++.+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~ 82 (140)
T 1k68_A 3 KKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDPT 82 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHSTT
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCcc
Confidence 4667777554 33455555555433 44444445777777764 6888775443 334666666665
Q ss_pred -cCCcEEEe-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 273 -SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 273 -~G~PvI~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.++|+|.- ..... .+.+ ..|..+++..|-+.+++.+.+..++.
T Consensus 83 ~~~~pii~ls~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~ 130 (140)
T 1k68_A 83 LKRIPVVVLSTSINEDDIFHSY---DLHVNCYITKSANLSQLFQIVKGIEE 130 (140)
T ss_dssp GGGSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred cccccEEEEecCCcHHHHHHHH---HhchhheecCCCCHHHHHHHHHHHHH
Confidence 45788754 33322 2233 55778999999999999999988754
No 76
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=85.43 E-value=4.8 Score=28.48 Aligned_cols=107 Identities=15% Similarity=0.203 Sum_probs=63.6
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe-
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 280 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s- 280 (385)
+.+++++.+.+. ...+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. .++|+|..
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s 82 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVRNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVIT 82 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCCSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 356777775543 334444444334333333344666666654 477776433 2334556666654 36788753
Q ss_pred cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 281 RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 281 ~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
..... .+.+ +.|..+++..|.+.+++.+++..++.
T Consensus 83 ~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 83 GHGDVPMAVEAM---KAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp CTTCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHH---HhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 33332 2333 56778999999999999999988765
No 77
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=85.05 E-value=4.4 Score=30.00 Aligned_cols=107 Identities=14% Similarity=0.207 Sum_probs=61.8
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh---cCCcEEEe-c
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 281 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~s-~ 281 (385)
.+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. .++|+|.. .
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 4 PSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEEC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEEC
Confidence 45666665432 334444444344444433334555555443 5777765432 334555665553 36888754 3
Q ss_pred CCC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 282 AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 282 ~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
... ..+.+ ..|..+++..|.+.+++.+.+..++..
T Consensus 84 ~~~~~~~~~~~---~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 84 HGDIPMAVQAI---QDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp GGGHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHH---hcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 222 22334 567789999999999999999988653
No 78
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Probab=84.97 E-value=6.3 Score=34.48 Aligned_cols=83 Identities=6% Similarity=-0.033 Sum_probs=56.6
Q ss_pred HHHHHHHHhCcEEEEcC--CCC-CCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 242 EELSQAYASGDVFVMPS--ESE-TLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps--~~e-~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
++..++++...+++..- ... =..-++.+|+.+|+-.|.-..+...++++ .+.---+-+..+++++++.|..+-+
T Consensus 223 ~~~~~~l~~YKFyLafENs~c~dYvTEK~~~al~~g~VPI~~G~~~~~~~~P---p~SfI~~~dF~s~~~La~yL~~L~~ 299 (371)
T 2nzw_A 223 KNKNEFLSQYKFNLCFENTQGYGYVTEKIIDAYFSHTIPIYWGSPSVAKDFN---PKSFVNVHDFKNFDEAIDYIKYLHT 299 (371)
T ss_dssp SCHHHHHTTEEEEEEECSSCCTTCCCTHHHHHHHTTCEEEEESCTTGGGTSC---GGGSEEGGGSSSHHHHHHHHHHHHT
T ss_pred ccHHHHHhcCcEEEEEeccCCCCcccHHHHHHHhCCeEEEEECCCchhhhCC---CCceEEcccCCCHHHHHHHHHHHhc
Confidence 44567788888887653 222 34678999999996555554555666662 2222223355689999999999999
Q ss_pred CHHHHHHHH
Q 016648 319 NQELRETMG 327 (385)
Q Consensus 319 ~~~~~~~~~ 327 (385)
|++++.++-
T Consensus 300 n~~~Y~~y~ 308 (371)
T 2nzw_A 300 HKNAYLDML 308 (371)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999887654
No 79
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=84.85 E-value=8.9 Score=27.56 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=65.7
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcEEE
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 279 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~ 279 (385)
..+++|+.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (140)
T 3grc_A 6 RPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVV 85 (140)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEE
Confidence 356666665443 334444444444443333344666666554 477776544 34456777777664 678876
Q ss_pred ecCCC----CC-cccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 280 VRAGG----IP-DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 280 s~~~~----~~-e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
-.... .. +.. ..|..+++..|.+.+++.++|..+++.
T Consensus 86 ~s~~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~l~~ 127 (140)
T 3grc_A 86 VSANAREGELEFNSQ---PLAVSTWLEKPIDENLLILSLHRAIDN 127 (140)
T ss_dssp ECTTHHHHHHHHCCT---TTCCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred EecCCChHHHHHHhh---hcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 43321 11 334 567889999999999999999988753
No 80
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=84.59 E-value=6.3 Score=27.73 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=62.7
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh-----cCCcEEEe-
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV- 280 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~s- 280 (385)
+++++.+.+. ...+.......+......-+.++..+.+.. .|++++-.. .+.-|..+++.+. .++|+|..
T Consensus 4 ~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s 83 (122)
T 3gl9_A 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLT 83 (122)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEe
Confidence 4556655432 233444444334444444444666666654 477776543 3344677777774 35788753
Q ss_pred cCCCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 281 RAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 281 ~~~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
..+... +.+ +.|..+++..|-+.+++.+++.++++
T Consensus 84 ~~~~~~~~~~~~---~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 84 AKGGEEDESLAL---SLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp SCCSHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHH---hcChhhhccCCCCHHHHHHHHHHHhc
Confidence 333222 233 56778999999999999999988764
No 81
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=84.12 E-value=9.2 Score=27.14 Aligned_cols=106 Identities=20% Similarity=0.135 Sum_probs=63.7
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcEEEe
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 280 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~s 280 (385)
.+++|+.+.+. ...+..... .+..+...-+.++....+.. .|++++-.. .+.-|..+++.+.. ++|+|..
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~ 83 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFV 83 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEE
Confidence 46667765543 334444444 34444444444666666654 477776543 34456667776654 6788754
Q ss_pred -cCCC--CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 281 -RAGG--IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 -~~~~--~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
.... ..+.. ..|..+++..|-+.+++.++|.+++..
T Consensus 84 s~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~~ 122 (133)
T 3nhm_A 84 SGYAPRTEGPAD---QPVPDAYLVKPVKPPVLIAQLHALLAR 122 (133)
T ss_dssp ESCCC-----TT---SCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred eCCCcHhHHHHh---hcCCceEEeccCCHHHHHHHHHHHHhh
Confidence 2221 12333 667788999999999999999998753
No 82
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=84.10 E-value=4.8 Score=29.05 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=63.8
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc--CCcEEEe-c
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS--GIPVVGV-R 281 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~--G~PvI~s-~ 281 (385)
..+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|.- .
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ls~ 83 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYMTY 83 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEES
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEEEc
Confidence 356777776543 344555555444444333344566555554 577776433 22345666666643 5787754 3
Q ss_pred CCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 282 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 282 ~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.... .+.+ +.|..+++..|-+.+++.+++..++.
T Consensus 84 ~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~l~~~~~ 120 (136)
T 2qzj_A 84 INEDQSILNAL---NSGGDDYLIKPLNLEILYAKVKAILR 120 (136)
T ss_dssp CCCHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 3322 2334 56778999999999999999988754
No 83
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=83.53 E-value=0.98 Score=35.65 Aligned_cols=69 Identities=19% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHHHhCcEEEEcCCCCCCcH--HHHHHHhcCCcEEEecCCCCCc-----------ccccCCCCCeeEeeCCCCHHHH
Q 016648 243 ELSQAYASGDVFVMPSESETLGL--VVLEAMSSGIPVVGVRAGGIPD-----------IIPEDQDGKIGYLFNPGDLDDC 309 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~~e~~~~--~~~Ea~a~G~PvI~s~~~~~~e-----------~~~~~~~~~~g~~~~~~~~~~l 309 (385)
--.-+...||.+|...- ++|+ .+.|++..|+||++-+..+..+ ++ .......+.-.+|++++
T Consensus 111 Rk~~m~~~sda~IvlpG--G~GTL~E~~eal~~~kPV~lln~~g~w~~~l~~~~~~G~fi---~~~~~~~i~~~~~~ee~ 185 (195)
T 1rcu_A 111 RSFVLLRNADVVVSIGG--EIGTAIEILGAYALGKPVILLRGTGGWTDRISQVLIDGKYL---DNRRIVEIHQAWTVEEA 185 (195)
T ss_dssp HHHHHHTTCSEEEEESC--CHHHHHHHHHHHHTTCCEEEETTSCHHHHHGGGGCBTTTBS---STTCCSCEEEESSHHHH
T ss_pred HHHHHHHhCCEEEEecC--CCcHHHHHHHHHhcCCCEEEECCCCccHHHHHHHHHcCCcC---CHHHcCeEEEeCCHHHH
Confidence 34456677898775432 2333 5788999999999986543221 22 11222223334589999
Q ss_pred HHHHhHh
Q 016648 310 LSKLEPL 316 (385)
Q Consensus 310 ~~~i~~l 316 (385)
.+.|.++
T Consensus 186 ~~~l~~~ 192 (195)
T 1rcu_A 186 VQIIEQI 192 (195)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 8888664
No 84
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=83.43 E-value=6.6 Score=28.29 Aligned_cols=107 Identities=18% Similarity=0.244 Sum_probs=64.4
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcEEEe
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 280 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~s 280 (385)
.+++++.+.+. ...+.......+..+...-+.++..+.+.. .|++++-.. .+.-|..+++.+.. .+|+|..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~ 84 (136)
T 3t6k_A 5 HTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPILML 84 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEE
Confidence 45666665442 334444444444444444444666665554 477776544 33446667766643 5788754
Q ss_pred -cCCCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 281 -RAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 -~~~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
...... +.+ ..|..+++..|-+.+++.+++.+++..
T Consensus 85 t~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 85 TAQGDISAKIAGF---EAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp ECTTCHHHHHHHH---HHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred ecCCCHHHHHHHH---hcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 333222 223 457788999999999999999988764
No 85
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=83.26 E-value=7.4 Score=28.69 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=64.6
Q ss_pred CCceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe
Q 016648 208 PEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV 280 (385)
Q Consensus 208 ~~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s 280 (385)
...+++|+.+.+. ...+.......++.+...-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+|.-
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~l 85 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTSVQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVI 85 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSCCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEE
Confidence 3456777775543 344555555445444444444666666654 477776543 2334555666553 36787753
Q ss_pred -cCCC---CCcccccCCCC-CeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 281 -RAGG---IPDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 -~~~~---~~e~~~~~~~~-~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
.... ..+.+ ..| ..+++..|-+.+++.++|..++..
T Consensus 86 s~~~~~~~~~~~~---~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 86 SGYADAQATIDAV---NRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp ECGGGHHHHHHHH---HTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHH---hccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 3222 12223 344 678999999999999999888653
No 86
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=83.20 E-value=7.3 Score=28.81 Aligned_cols=107 Identities=17% Similarity=0.174 Sum_probs=66.3
Q ss_pred CceEEEEeCCc-cHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh-----cCCcEEE
Q 016648 209 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVG 279 (385)
Q Consensus 209 ~~~l~i~G~g~-~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~ 279 (385)
..+++|+.+.+ ....+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+|.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~ 86 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVIL 86 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEE
Confidence 35677776544 2344555555545444444444666666654 477776544 3344667777765 3678875
Q ss_pred ec-CCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 280 VR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 280 s~-~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.. .... .+.+ ..|..+++..|-+.+++.+++..++.
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~l~ 126 (154)
T 3gt7_A 87 LTILSDPRDVVRSL---ECGADDFITKPCKDVVLASHVKRLLS 126 (154)
T ss_dssp EECCCSHHHHHHHH---HHCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHH---HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 43 2322 2233 45778899999999999999998875
No 87
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=82.19 E-value=10 Score=27.34 Aligned_cols=109 Identities=7% Similarity=0.007 Sum_probs=66.5
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCe--EEecccChHHHHHHHHh-------CcEEEEcCC-CCCCcHHHHHHHhc-----
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPA--VFTGMLLGEELSQAYAS-------GDVFVMPSE-SETLGLVVLEAMSS----- 273 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i--~~~g~~~~~~~~~~~~~-------adi~v~ps~-~e~~~~~~~Ea~a~----- 273 (385)
.+++|+.+.+. ...+.......+. .+...-+.++....+.. .|++++-.. .+.-|..+++.+..
T Consensus 10 ~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ 89 (146)
T 3ilh_A 10 DSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQPM 89 (146)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCGGG
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhhhc
Confidence 46667765543 3445555554443 44444444677777765 688887544 34456667766554
Q ss_pred --CCcEEEecC-CCC---CcccccCCCC-CeeEeeCCCCHHHHHHHHhHhhcCHH
Q 016648 274 --GIPVVGVRA-GGI---PDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYNQE 321 (385)
Q Consensus 274 --G~PvI~s~~-~~~---~e~~~~~~~~-~~g~~~~~~~~~~l~~~i~~ll~~~~ 321 (385)
.+|+|.... ... .+.. ..+ ..+++..|-+.+++.++|.+......
T Consensus 90 ~~~~~ii~~t~~~~~~~~~~~~---~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 90 KNKSIVCLLSSSLDPRDQAKAE---ASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp TTTCEEEEECSSCCHHHHHHHH---HCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred cCCCeEEEEeCCCChHHHHHHH---hcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 577765433 222 2223 445 77899999999999999999887543
No 88
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A*
Probab=82.06 E-value=17 Score=28.61 Aligned_cols=262 Identities=15% Similarity=0.143 Sum_probs=143.6
Q ss_pred HHHHHHhhccCCCEEEeCCCchhHHH-H--HHHHHH-----hCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHh
Q 016648 53 PRIISEVARFKPDIIHASSPGIMVFG-A--LIIAKL-----LCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA 124 (385)
Q Consensus 53 ~~l~~~i~~~~pDiI~~~~~~~~~~~-~--~~~~~~-----~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (385)
.+..+++ ...|++++++.+..... + --.++. ..+++|+.-|++......+.. -.....++
T Consensus 67 dkalklv--ndcdiliinsvpatsvqeatinnykklldnikpsirvvvyqhdhsvlslrrnl----------gleetvrr 134 (401)
T 1xv5_A 67 DKALKLV--NDCDILIINSVPATSVQEATINNYKKLLDNIKPSIRVVVYQHDHSVLSLRRNL----------GLEETVRR 134 (401)
T ss_dssp HHHHHHH--TSCSEEEEEECCBTTSCHHHHHHHHHHHHHSCTTSEEEEEECCCSHHHHTTBS----------SHHHHHHH
T ss_pred HHHhhhh--ccCcEEEEccCccchhHHHHHhhHHHHHhcCCCceEEEEEeccchhhhhhhhc----------ChHHhhhh
Confidence 3444444 35699888754222211 1 111222 356788888986533221111 12346788
Q ss_pred CCeEEEcChh---HHHHHHHhcccCCCcEEEeeCCCCC----CCCCCCCCChhhHhhhcCCCCCC---cEEEEEeecccc
Q 016648 125 ADLTLVPSVA---IGKDLEAARVTAANKIRIWKKGVDS----ESFHPRFRSSEMRWRLSNGEPDK---PLIVHVGRLGVE 194 (385)
Q Consensus 125 ad~ii~~s~~---~~~~~~~~~~~~~~~i~vi~~~v~~----~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~G~~~~~ 194 (385)
||.++..|+. .+-.+++.++ +.+.... .++. -.|.|.......+... ...-.. .+--++|+...+
T Consensus 135 advifshsdngdfnkvlmkewyp---etvslfd-dieeaptvynfqppmdivkvrsty-wkdvseinmninrwigrtttw 209 (401)
T 1xv5_A 135 ADVIFSHSDNGDFNKVLMKEWYP---ETVSLFD-DIEEAPTVYNFQPPMDIVKVRSTY-WKDVSEINMNINRWIGRTTTW 209 (401)
T ss_dssp CSEEEESCTTSHHHHTHHHHHSC---SSCCSSS-CCCCCCCEEECCCCBCHHHHHHHH-CCCGGGCEEEEEEEECCSCGG
T ss_pred hceEEecCCCCcHHHHHHHhhcc---chhhhhc-chhhCCceeccCCCceeeeeehhh-hccHHHhhcchhhhhcccchh
Confidence 9999998863 2233344443 1111110 0100 0122222211111111 111111 233489999999
Q ss_pred ccHHHHHHHHHhC--CC-ceEEEEeCCccHHHHHHHHcCC-------------------CeEEecccChHHHHHHHHhCc
Q 016648 195 KSLDFLKRVMDRL--PE-ARIAFIGDGPYREELEKMFTGM-------------------PAVFTGMLLGEELSQAYASGD 252 (385)
Q Consensus 195 k~~~~l~~a~~~~--~~-~~l~i~G~g~~~~~l~~~~~~~-------------------~i~~~g~~~~~~~~~~~~~ad 252 (385)
||.-.+.+.-+++ |. -.-++-|-......+.-.-+.. .-.++...-+.++.+-|+.+.
T Consensus 210 kgfyqmfdfhekflkpagkstvmeglerspafiaikekgipyeyygnreidkmnlapnqpaqildcyinsemlermsksg 289 (401)
T 1xv5_A 210 KGFYQMFDFHEKFLKPAGKSTVMEGLERSPAFIAIKEKGIPYEYYGNREIDKMNLAPNQPAQILDCYINSEMLERMSKSG 289 (401)
T ss_dssp GCHHHHHHHHHHTTTTTTCEEEEECCCCSHHHHHHHHTTCCEEEECGGGGGGCCCSSSCCEEEESCCCHHHHHHHHHTEE
T ss_pred HhHHHHhhHHHHhcCccchhhhhhhhhcCCceEEEcccCCchhhcCcchhhhhcCCCCCcchhhhheecHHHHHHhhhcC
Confidence 9999998887776 32 2334444222111111111111 234555555678999999999
Q ss_pred EEEEcCC------CCCCcHHHHHHHhcCCcEEEec-CCC-------CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 253 VFVMPSE------SETLGLVVLEAMSSGIPVVGVR-AGG-------IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 253 i~v~ps~------~e~~~~~~~Ea~a~G~PvI~s~-~~~-------~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
+....|. ....-.+-+|--+||+-.|-.. .|. ...+. .+....+.++.+|.++-.+.|.++.+
T Consensus 290 fgyqlsklnqkylqrsleythlelgacgtipvfwkstgenlkfrvdntplt---shdsgiiwfdendmestferikelss 366 (401)
T 1xv5_A 290 FGYQLSKLNQKYLQRSLEYTHLELGACGTIPVFWKSTGENLKFRVDNTPLT---SHDSGIIWFDENDMESTFERIKELSS 366 (401)
T ss_dssp EEEECCCCCGGGCSSCCCHHHHHHHHHTSEEEEEHHHHHHSBCTTTCCBGG---GSCCSCEEECTTCHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHhhhhhheeecccccceeeeecccCcceEEEecCCccc---ccCCceEEecCCchHHHHHHHHHhcc
Confidence 8877664 2356778999999996555332 111 11122 23333467888999999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 016648 319 NQELRETMGQAARQEM 334 (385)
Q Consensus 319 ~~~~~~~~~~~a~~~~ 334 (385)
|..++.+-+++|++++
T Consensus 367 dralydrerekayefl 382 (401)
T 1xv5_A 367 DRALYDREREKAYEFL 382 (401)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHH
Confidence 9999998888888876
No 89
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=81.35 E-value=13 Score=26.73 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=63.4
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcEEEe
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 280 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~s 280 (385)
.+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|..
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~l 83 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATPPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVLML 83 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEE
Confidence 35666665543 334444444344444434444666666554 578776543 23446677777753 5788743
Q ss_pred -cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCH
Q 016648 281 -RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320 (385)
Q Consensus 281 -~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~ 320 (385)
..............+..+++..|.+.+++.+++..++...
T Consensus 84 s~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~ 124 (138)
T 3c3m_A 84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR 124 (138)
T ss_dssp ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred ECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence 3332221111112234689999999999999999887643
No 90
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=81.25 E-value=8.7 Score=27.57 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=66.8
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHhC--cEEEEcCCC------CCCcHHHHHHHh---cCCc
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASG--DVFVMPSES------ETLGLVVLEAMS---SGIP 276 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~a--di~v~ps~~------e~~~~~~~Ea~a---~G~P 276 (385)
..+++++.+.+. ...+.......+..+...-+.++....+... |++++-... +.-|..+++.+. .++|
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 82 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLP 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSCEEEEEEETTTTC-----CCHHHHHHHHHHHCTTCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCC
Confidence 356777775543 3455555555555554444446777776654 666664332 334555665554 4678
Q ss_pred EEEe-cCCC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCH
Q 016648 277 VVGV-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320 (385)
Q Consensus 277 vI~s-~~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~ 320 (385)
+|.. .... ..+.+ ..|..+++..+-+.+++.+++..++...
T Consensus 83 ii~ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 83 VVLFTAYADIDLAVRGI---KEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp EEEEEEGGGHHHHHHHH---HTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCHHHHHHHH---HcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 8753 2222 22334 5677889999999999999999987653
No 91
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=80.42 E-value=14 Score=26.55 Aligned_cols=106 Identities=17% Similarity=0.239 Sum_probs=61.5
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh-----cCCcEEEe
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV 280 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~s 280 (385)
.+++|+.+.+. ...+....... ..+...-+.++....+.. .|++++-.. .+.-|..+++.+. .++|+|..
T Consensus 4 ~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 82 (140)
T 3n53_A 4 KKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHHPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPLILL 82 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHCCSEEEEETTC------CHHHHHHTSTTCTTCCEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCEEEE
Confidence 45667765443 34455555444 444444444666665544 577776543 2333555666655 46788743
Q ss_pred -cCC---CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 281 -RAG---GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 -~~~---~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
... ...+.+ ..|..+++..|.+.+++.+++..++..
T Consensus 83 s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 83 FSSEHKEAIVNGL---HSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp ECC----CTTTTT---TCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHH---hcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 322 223344 667789999999999999999988753
No 92
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=80.14 E-value=14 Score=26.36 Aligned_cols=109 Identities=17% Similarity=0.207 Sum_probs=65.4
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh---CcEEEEcCC-CCCCcHHHHHHHhc----CCcEEE
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMSS----GIPVVG 279 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~---adi~v~ps~-~e~~~~~~~Ea~a~----G~PvI~ 279 (385)
..+++|+.+.+. ...+.......++.+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|.
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~ 86 (136)
T 3hdv_A 7 RPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQKRIGLMITDLRMQPESGLDLIRTIRASERAALSIIV 86 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCCCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence 356777775543 334444444444444444444666555543 467766543 34456677777654 467775
Q ss_pred e-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCH
Q 016648 280 V-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320 (385)
Q Consensus 280 s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~ 320 (385)
. ..... .+.+ ..|..+++..|-+.+++.++|.++....
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 87 VSGDTDVEEAVDVM---HLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EESSCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EeCCCChHHHHHHH---hCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 4 33322 2334 5678899999999999999999987754
No 93
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=80.04 E-value=9.1 Score=27.45 Aligned_cols=107 Identities=11% Similarity=0.041 Sum_probs=63.1
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecc-cChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh-cCCcEEE-ec
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGM-LLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-SGIPVVG-VR 281 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~-~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-~G~PvI~-s~ 281 (385)
..+++|+-+.+. ...+.......+....+. -+.++..+.++. -|++++--. .+.-|..+++.+. .++|||. |.
T Consensus 8 ~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~~DlvllDi~mP~~~G~el~~~lr~~~ipvI~lTa 87 (123)
T 2lpm_A 8 RLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQFDIAIIDVNLDGEPSYPVADILAERNVPFIFATG 87 (123)
T ss_dssp CCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCCSSEEEECSSSSSCCSHHHHHHHHHTCCSSCCBCT
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHcCCCCEEEEec
Confidence 456777765443 344444444434444433 233666666655 477776433 2334666666653 5789874 33
Q ss_pred CCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 282 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 282 ~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.+...... +.+..+++.+|-+.+++.+++.+++.
T Consensus 88 ~~~~~~~~---~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 88 YGSKGLDT---RYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp TCTTSCCS---SSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred CccHHHHH---hCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 33222222 45677899999999999999988753
No 94
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=79.68 E-value=7.9 Score=27.48 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=62.4
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeE-EecccChHHHHHHHH---hCcEEEEcCC-CCCCcHHHHHHHhc-----CCcE
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAV-FTGMLLGEELSQAYA---SGDVFVMPSE-SETLGLVVLEAMSS-----GIPV 277 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~-~~g~~~~~~~~~~~~---~adi~v~ps~-~e~~~~~~~Ea~a~-----G~Pv 277 (385)
..+++++.+.+. ...+.......+.. ....-+..+....+. ..|++++-.. .+.-|..+++.+.. .+|+
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pi 84 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPI 84 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeE
Confidence 356677765542 33444444433321 222223345444443 3577776443 34446777877753 5788
Q ss_pred EEe-cCCCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 278 VGV-RAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 278 I~s-~~~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
|.. ...... +.+ +.|..+++..|-+.+++.+++..++..
T Consensus 85 i~~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 85 IMITAEGGKAEVITAL---KAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEESCCSHHHHHHHH---HHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEeCCCChHHHHHHH---HcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 754 333222 233 457789999999999999999988753
No 95
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=79.66 E-value=9.3 Score=27.48 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=63.1
Q ss_pred CceEEEEeCCcc-HHHHHHHHcC-CCeE-EecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcE
Q 016648 209 EARIAFIGDGPY-REELEKMFTG-MPAV-FTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPV 277 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~-~~i~-~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~Pv 277 (385)
..+++++.+.+. ...+...... .++. +...-+.++....+.. .|++++-.. .+.-|..+++.+.. ++|+
T Consensus 8 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~i 87 (143)
T 3cnb_A 8 DFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIV 87 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTCCSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEE
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcCCCEEEEecccCCCcHHHHHHHHHhCccccCCcE
Confidence 456667665442 2334444433 3332 2222233566655554 577776544 33446667777654 5777
Q ss_pred EE-ecCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 278 VG-VRAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 278 I~-s~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
|. +..... .+.+ ..|..+++..+-+.+++.+++..++..
T Consensus 88 i~~s~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 88 IAMTGALTDDNVSRIV---ALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp EEEESSCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHH---hcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 74 333332 2233 567788999999999999999988754
No 96
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=79.23 E-value=11 Score=26.68 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=62.7
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcEEE
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVG 279 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~ 279 (385)
..+++++.+.+. ...+.....+.+..+...-+.++....+.. .|++++-.. .+.-|..+++.+.. ..|+|.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILV 85 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEE
Confidence 346666665432 334444444444444434444666555543 477776543 34456777777753 345555
Q ss_pred ecCCCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 280 VRAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 280 s~~~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
+...... +.+ +.|..+++..|.+.+++.++|.+....
T Consensus 86 ~~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (132)
T 3lte_A 86 VSGLDKAKLQQAV---TEGADDYLEKPFDNDALLDRIHDLVNE 125 (132)
T ss_dssp ECCSCSHHHHHHH---HHTCCEEECSSCCHHHHHHHHHHHHC-
T ss_pred EeCCChHHHHHHH---HhChHHHhhCCCCHHHHHHHHHHHcCC
Confidence 4332222 233 557788999999999999999988754
No 97
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=79.03 E-value=3 Score=30.27 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=65.5
Q ss_pred ceEEEEeCCcc-HHHHHHHHcC-CCeEEecccChHHHHHHHHh---CcEEEEcCCCC--CCcHHHHHHHhc-----CCcE
Q 016648 210 ARIAFIGDGPY-REELEKMFTG-MPAVFTGMLLGEELSQAYAS---GDVFVMPSESE--TLGLVVLEAMSS-----GIPV 277 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~-~~i~~~g~~~~~~~~~~~~~---adi~v~ps~~e--~~~~~~~Ea~a~-----G~Pv 277 (385)
.+++|+.+.+. ...+...... .++.+...-+.++....+.. .|++++-.... .-|..+++.+.. .+|+
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~i 84 (140)
T 3lua_A 5 GTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPV 84 (140)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCE
Confidence 45666665443 3344444444 44444444444666666655 57777654432 235566666544 7888
Q ss_pred EEec-CCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCH
Q 016648 278 VGVR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320 (385)
Q Consensus 278 I~s~-~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~ 320 (385)
|... .... .+.+ ..|..+++..|-+.+++.++|..++...
T Consensus 85 i~ls~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (140)
T 3lua_A 85 IIATKSDNPGYRHAAL---KFKVSDYILKPYPTKRLENSVRSVLKIC 128 (140)
T ss_dssp EEEESCCCHHHHHHHH---HSCCSEEEESSCCTTHHHHHHHHHHCC-
T ss_pred EEEeCCCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHHHhc
Confidence 7543 2222 2333 5677889999999999999999998754
No 98
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=78.71 E-value=17 Score=26.49 Aligned_cols=111 Identities=17% Similarity=0.185 Sum_probs=63.8
Q ss_pred CCceEEEEeCCcc-HHHHHHHHcCCCeE-EecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh-----cCCcE
Q 016648 208 PEARIAFIGDGPY-REELEKMFTGMPAV-FTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPV 277 (385)
Q Consensus 208 ~~~~l~i~G~g~~-~~~l~~~~~~~~i~-~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~Pv 277 (385)
++.+++|+-+.+. ...+.......+.. ..-.-+..+..+.++. -|++++--. .+--|..+++.+. ..+||
T Consensus 11 k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~~~~~ipv 90 (134)
T 3to5_A 11 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPV 90 (134)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCCCCeE
Confidence 3567777765543 23334444333322 1112233455555544 477776443 2334777777774 46888
Q ss_pred EE-ecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 278 VG-VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 278 I~-s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
|. |..+...+.....+.|-.+++.+|-+.+++.+++.++++
T Consensus 91 I~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 91 LMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp EEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 74 333332222211156888999999999999999998864
No 99
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=78.50 E-value=5.4 Score=28.68 Aligned_cols=108 Identities=16% Similarity=0.121 Sum_probs=60.6
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh-CcEEEEcCC-CCCCcHHHHHHHh--c-----CCc-E
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS-GDVFVMPSE-SETLGLVVLEAMS--S-----GIP-V 277 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~-adi~v~ps~-~e~~~~~~~Ea~a--~-----G~P-v 277 (385)
..+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. . ..| +
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 86 (136)
T 1dcf_A 7 GLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHKVVFMDVCMPGVENYQIALRIHEKFTKQRHQRPLL 86 (136)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTTCSEEEEECCSSTTTTTHHHHHHHHHHC-CCSCCCEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhccCCEEEEeCCCCCCcHHHHHHHHHHhhhhccCCCceE
Confidence 456677765543 233444443334333333333555555432 388776433 2233555666553 1 344 5
Q ss_pred E-EecCCCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 278 V-GVRAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 278 I-~s~~~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
| .|...... +.+ +.|..+++..|-+.+++.+++.+++..
T Consensus 87 i~~s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 87 VALSGNTDKSTKEKCM---SFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp EEEESCCSHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred EEEeCCCCHHHHHHHH---HcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 4 45444322 233 567789999999999999999888754
No 100
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=78.37 E-value=16 Score=26.58 Aligned_cols=106 Identities=13% Similarity=0.105 Sum_probs=62.7
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCC--eEEecccChHHHHHHHH---------hCcEEEEcCCC-CCCcHHHHHHHhc--
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMP--AVFTGMLLGEELSQAYA---------SGDVFVMPSES-ETLGLVVLEAMSS-- 273 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~--i~~~g~~~~~~~~~~~~---------~adi~v~ps~~-e~~~~~~~Ea~a~-- 273 (385)
..+++++.+.+. ...+.......+ ..+...-+.++....+. ..|++++-... +.-|..+++.+..
T Consensus 8 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~~ 87 (149)
T 1i3c_A 8 PKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQNP 87 (149)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHCT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhCc
Confidence 356666765543 334455444432 23333334466666665 36888875442 3346667776653
Q ss_pred ---CCcEEEe-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 274 ---GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 274 ---G~PvI~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
++|+|.- ..... .+.+ +.|..+++..+.+.+++.+++..++
T Consensus 88 ~~~~~piiils~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~ 135 (149)
T 1i3c_A 88 DLKRIPVVVLTTSHNEDDVIASY---ELHVNCYLTKSRNLKDLFKMVQGIE 135 (149)
T ss_dssp TTTTSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCChHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHH
Confidence 5677643 33322 2333 5677899999999999999988764
No 101
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=78.26 E-value=12 Score=26.37 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=60.2
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCe-EEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcEE
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPA-VFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVV 278 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i-~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI 278 (385)
..+++++.+.+. ...+.......+. .+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii 83 (128)
T 1jbe_A 4 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVL 83 (128)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCCCCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEE
T ss_pred ccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEE
Confidence 345666665442 2333443333222 12222233555555543 477776443 23346677777764 56776
Q ss_pred Ee-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 279 GV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 279 ~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
.. ..... .+.+ +.|..+++..|-+.+++.+++.+++
T Consensus 84 ~~s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~~ 123 (128)
T 1jbe_A 84 MVTAEAKKENIIAAA---QAGASGYVVKPFTAATLEEKLNKIF 123 (128)
T ss_dssp EEESSCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred EEecCccHHHHHHHH---HhCcCceeecCCCHHHHHHHHHHHH
Confidence 43 33322 2233 5677889999999999999998775
No 102
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=78.08 E-value=15 Score=26.04 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=61.4
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh---cCCcEEEe-c
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 281 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~s-~ 281 (385)
.+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. .++|+|.- .
T Consensus 4 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (132)
T 3crn_A 4 KRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEFFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTG 83 (132)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEES
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEec
Confidence 35666665443 233444444334444333334565555544 5777764432 234556666553 36787743 3
Q ss_pred CCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 282 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 282 ~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.... .+.+ +.|..+++..|-+.+++.+++..++.
T Consensus 84 ~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 84 YASLENSVFSL---NAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp CCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHH---hccchhhccCCCCHHHHHHHHHHHHh
Confidence 3322 2333 56788999999999999999988764
No 103
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=78.00 E-value=8 Score=28.42 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=63.1
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCe--EEecccChHHHHHHHH-----------hCcEEEEcCC-CCCCcHHHHHHHhc-
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPA--VFTGMLLGEELSQAYA-----------SGDVFVMPSE-SETLGLVVLEAMSS- 273 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i--~~~g~~~~~~~~~~~~-----------~adi~v~ps~-~e~~~~~~~Ea~a~- 273 (385)
.+++|+.+.+. ...+.......+. .+...-+.++....+. ..|++++-.. .+.-|..+++.+..
T Consensus 5 ~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~~ 84 (152)
T 3heb_A 5 VTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKEN 84 (152)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHHS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 56677765543 3344444443322 3333344467777664 3577776543 34456777777664
Q ss_pred ----CCcEEEe-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHh
Q 016648 274 ----GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 274 ----G~PvI~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~l 316 (385)
++|+|.. ..... .+.+ ..|..+++..|-+.+++.++|.++
T Consensus 85 ~~~~~~pii~~t~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~ 132 (152)
T 3heb_A 85 PHTRRSPVVILTTTDDQREIQRCY---DLGANVYITKPVNYENFANAIRQL 132 (152)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHH
T ss_pred ccccCCCEEEEecCCCHHHHHHHH---HCCCcEEEeCCCCHHHHHHHHHHH
Confidence 5778754 33321 2234 567789999999999999999887
No 104
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=77.84 E-value=8.6 Score=27.85 Aligned_cols=107 Identities=11% Similarity=0.157 Sum_probs=63.8
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCC--CeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcE
Q 016648 209 EARIAFIGDGPY-REELEKMFTGM--PAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPV 277 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~--~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~Pv 277 (385)
..+++|+.+.+. ...+....... ...+...-+.++....+.. .|++++-.. .+.-|..+++.+.. ++|+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPI 84 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCE
Confidence 356667765442 33444444333 2223333334666666654 477776543 33446677777764 5788
Q ss_pred EEec-CCCCC---cccccCCCCCeeEeeCCC-CHHHHHHHHhHhhc
Q 016648 278 VGVR-AGGIP---DIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLY 318 (385)
Q Consensus 278 I~s~-~~~~~---e~~~~~~~~~~g~~~~~~-~~~~l~~~i~~ll~ 318 (385)
|... ..... +.+ ..|..+++..+. +.+++.++|..+++
T Consensus 85 i~~s~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~~l~~~i~~~l~ 127 (144)
T 3kht_A 85 VILTDNVSDDRAKQCM---AAGASSVVDKSSNNVTDFYGRIYAIFS 127 (144)
T ss_dssp EEEETTCCHHHHHHHH---HTTCSEEEECCTTSHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHH---HcCCCEEEECCCCcHHHHHHHHHHHHH
Confidence 7543 22222 234 567889999999 99999999988864
No 105
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=77.65 E-value=14 Score=25.93 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=64.9
Q ss_pred ceEEEEeCCc-cHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcEEEe
Q 016648 210 ARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGV 280 (385)
Q Consensus 210 ~~l~i~G~g~-~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~s 280 (385)
.+++|+.+.+ ....+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|..
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~ 83 (127)
T 3i42_A 4 QQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAV 83 (127)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEE
Confidence 4667777554 3345555555555555444455777666654 477776443 34456677776653 4788753
Q ss_pred -cCCCC--CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 281 -RAGGI--PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 -~~~~~--~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
..... .+.+ ..|..+++..|-+.+++.+++......
T Consensus 84 s~~~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 84 SGFAKNDLGKEA---CELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp ECC-CTTCCHHH---HHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred ECCcchhHHHHH---HHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 22221 2333 456678999999999999999887654
No 106
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=77.50 E-value=14 Score=25.71 Aligned_cols=105 Identities=14% Similarity=0.132 Sum_probs=61.1
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh--cCCcEEEe-cCC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS--SGIPVVGV-RAG 283 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a--~G~PvI~s-~~~ 283 (385)
+++++.+.+. ...+.......+..+...-+.++..+.+.. .|++++-.. .+.-|..+++.+. .+.|+|.. ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t~~~ 83 (120)
T 3f6p_A 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLTAKD 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEEESS
T ss_pred eEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEECCC
Confidence 5566665432 333444444334444444444666666654 577776443 2333556666554 35787743 332
Q ss_pred CC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 284 GI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 284 ~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.. .+.+ ..|..+++..|-+.+++..++.+++.
T Consensus 84 ~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~l~ 118 (120)
T 3f6p_A 84 SEIDKVIGL---EIGADDYVTKPFSTRELLARVKANLR 118 (120)
T ss_dssp CHHHHHHHH---HTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred ChHHHHHHH---hCCcceeEcCCCCHHHHHHHHHHHHh
Confidence 22 2234 56788999999999999999987764
No 107
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=76.99 E-value=12 Score=27.07 Aligned_cols=107 Identities=13% Similarity=0.172 Sum_probs=62.8
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCe--EEecccChHHHHHHHHh------------CcEEEEcCCC-CCCcHHHHHHHh
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPA--VFTGMLLGEELSQAYAS------------GDVFVMPSES-ETLGLVVLEAMS 272 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i--~~~g~~~~~~~~~~~~~------------adi~v~ps~~-e~~~~~~~Ea~a 272 (385)
..+++++.+.+. ...+.......+. .+...-+.++....+.. .|++++-... +.-|..+++.+.
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 345666665442 2334444433322 23333334666666653 5787765443 334667777765
Q ss_pred -----cCCcEEEe-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 273 -----SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 273 -----~G~PvI~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.++|+|.. ..... .+.+ ..|..+++..|-+.+++.+.+..++.
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~ 137 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICY---SYSISSYIVKPLEIDRLTETVQTFIK 137 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHH---HTTCSEEEECCSSHHHHHHHHHHHHH
T ss_pred hCcccCCCeEEEEeCCCCHHHHHHHH---HCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 45777754 33321 2233 55778899999999999999988753
No 108
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=76.78 E-value=10 Score=26.42 Aligned_cols=106 Identities=13% Similarity=0.185 Sum_probs=62.1
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC--CCCcHHHHHHHh-----cCCcEEE
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES--ETLGLVVLEAMS-----SGIPVVG 279 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~--e~~~~~~~Ea~a-----~G~PvI~ 279 (385)
.+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. ..+|+|.
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~ 85 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDRPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVI 85 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHCCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 35666665432 233444433333333333333555555543 5777764332 334566676664 4688887
Q ss_pred ecCCCC----CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 280 VRAGGI----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 280 s~~~~~----~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
. .... .+.. ..|..+++..|-+.+++.+.+..++..
T Consensus 86 ~-~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 86 I-GNPDGFAQHRKL---KAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp E-ECGGGHHHHHHS---TTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred E-ecCCchhHHHHH---HhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 6 3222 2233 567788999999999999999888754
No 109
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=76.38 E-value=10 Score=25.90 Aligned_cols=105 Identities=15% Similarity=0.122 Sum_probs=61.9
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh-----cCCcEEE-e
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVG-V 280 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~-s 280 (385)
+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-+..+++.+. .++|+|. +
T Consensus 3 ~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~ 82 (119)
T 2j48_A 3 HILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFL 82 (119)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEe
Confidence 4566665442 334444444444444444444666555544 577776543 3344666777765 4577764 3
Q ss_pred cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 281 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 281 ~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
+.....+.. ..|..+++..|-+.+++.+.+..++.
T Consensus 83 ~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 83 GEPPVDPLL---TAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp SSCCSSHHH---HHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred CCCCchhhh---hcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 333222444 45677888899999999999987764
No 110
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=76.24 E-value=23 Score=28.68 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=59.6
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCC-CCCCcHHHHHHHhc---CCcEEEe-c
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS---GIPVVGV-R 281 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI~s-~ 281 (385)
.+++|+.+.+. ...+.......+..+...-+.++..+.+. ..|++++-.. .+.-|..+++.+.. .+|+|.- .
T Consensus 24 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~ 103 (250)
T 3r0j_A 24 ARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRPDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTA 103 (250)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEEC
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEC
Confidence 45555554332 22233333322333333333355554443 3577776543 33446666666643 5787743 3
Q ss_pred CCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 282 AGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 282 ~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
...........+.|..+++..|.+.+++.++|..++.
T Consensus 104 ~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~ 140 (250)
T 3r0j_A 104 RDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILR 140 (250)
T ss_dssp STTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 3322222111166888999999999999999988864
No 111
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=76.12 E-value=18 Score=25.47 Aligned_cols=109 Identities=17% Similarity=0.108 Sum_probs=63.6
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh---CcEEEEcCCC-C-CCcHHHHHHHh---cCCcEEE
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSES-E-TLGLVVLEAMS---SGIPVVG 279 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~---adi~v~ps~~-e-~~~~~~~Ea~a---~G~PvI~ 279 (385)
..+++++.+.+. ...+.......++.+...-+.++....+.. .|++++-... + .-|..+++.+. .++|+|.
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~ 84 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVY 84 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTCCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcCCCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 456777775543 334454444444444444455677666654 5887765443 2 34556666654 3678875
Q ss_pred e-cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 280 V-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 280 s-~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
. .............. .+++..|-+.+++.+++.+++..
T Consensus 85 ~s~~~~~~~~~~~~~~--~~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 85 ISGHAALEWASNGVPD--SIILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp EESSCCTTHHHHSCTT--CEEEESSCCHHHHHHHHHHHHHT
T ss_pred EeCCccHHHHHhhcCC--cceEeCCCCHHHHHHHHHHHHhc
Confidence 4 33322222211122 26899999999999999888753
No 112
>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=75.59 E-value=2.6 Score=35.27 Aligned_cols=96 Identities=15% Similarity=0.085 Sum_probs=53.1
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHH----HHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcC
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYRE----ELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPS 258 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~----~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps 258 (385)
..++.+|.. .+--..+++++.+.++++++-+-+....+ .+.++. .+.- |..-.+++.+++..+|++|--+
T Consensus 8 ikV~V~Ga~--G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~---g~~~-gv~v~~dl~~ll~~~DVVIDfT 81 (272)
T 4f3y_A 8 MKIAIAGAS--GRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFL---GKQT-GVALTDDIERVCAEADYLIDFT 81 (272)
T ss_dssp EEEEESSTT--SHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTT---TCCC-SCBCBCCHHHHHHHCSEEEECS
T ss_pred cEEEEECCC--CHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHh---CCCC-CceecCCHHHHhcCCCEEEEcC
Confidence 345555422 22245667777777777765543321100 011111 0111 2222357777788999999776
Q ss_pred CCCCCcHHHHHHHhcCCcEEEecCCC
Q 016648 259 ESETLGLVVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s~~~~ 284 (385)
..+..-.-+..++..|+|+|+...|.
T Consensus 82 ~p~a~~~~~~~al~~G~~vVigTTG~ 107 (272)
T 4f3y_A 82 LPEGTLVHLDAALRHDVKLVIGTTGF 107 (272)
T ss_dssp CHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 54444445667899999999876664
No 113
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=75.49 E-value=16 Score=25.28 Aligned_cols=104 Identities=19% Similarity=0.283 Sum_probs=59.5
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh--cCCcEEEe-cCC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--SGIPVVGV-RAG 283 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a--~G~PvI~s-~~~ 283 (385)
+++++.+.+. ...+.......+......-+.++....+.. .|++++-... +.-|..+++.+. ...|+|.. ...
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 83 (122)
T 1zgz_A 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQSVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRS 83 (122)
T ss_dssp EEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEESSC
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEECCC
Confidence 5566665432 334444443333333333344666665554 5777765432 334566666664 35777643 333
Q ss_pred CC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 284 GI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 284 ~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
.. .+.+ +.|..+++..|-+.+++.+.+..++
T Consensus 84 ~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~ 117 (122)
T 1zgz_A 84 DRIDRIVGL---EMGADDYVTKPLELRELVVRVKNLL 117 (122)
T ss_dssp CHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ChhhHHHHH---HhCHHHHccCCCCHHHHHHHHHHHH
Confidence 32 2223 4577889999999999999987764
No 114
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=75.49 E-value=14 Score=25.60 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=60.1
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc-----CCcEEEec
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS-----GIPVVGVR 281 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~-----G~PvI~s~ 281 (385)
+++++.+.+. ...+.......+......-+..+....+.. .|++++-.. .+.-|..+++.+.. .+|+|...
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 82 (124)
T 1mb3_A 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVVAVT 82 (124)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHCCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEEEEC
T ss_pred EEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEEEEE
Confidence 4556665442 233444444334444444444555555443 588776543 23346667776653 57887542
Q ss_pred -CCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 282 -AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 282 -~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.... .+.. +.|..+++..|-+.+++.+++..++.
T Consensus 83 ~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 83 AFAMKGDEERIR---EGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp ------CHHHHH---HHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHH---hCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 2221 2223 45778899999999999999988765
No 115
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=75.09 E-value=18 Score=25.11 Aligned_cols=107 Identities=17% Similarity=0.177 Sum_probs=62.4
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCC-CCCcHHHHHHHh---cCCcEEE-ec
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVG-VR 281 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~-s~ 281 (385)
.+++++.+.+. ...+.......+......-+.++....+. ..|++++-... +.-|..+++.+. ..+|+|. |.
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTA 83 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEc
Confidence 35666665543 33444555444444443334455555554 36887765432 234555666554 4678874 33
Q ss_pred CCCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 282 AGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 282 ~~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
..... +.. ..|..+++..|.+.+++.+++.+++..
T Consensus 84 ~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 84 YGELDMIQESK---ELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp SCCHHHHHHHH---HHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred cCchHHHHHHH---hcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 33322 223 446778999999999999999887653
No 116
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=75.08 E-value=6.1 Score=30.00 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=40.9
Q ss_pred HHHHhCcEEEEcCC-CCCCcHHHHH---HHhcCCcEEEecC-----CCC--------CcccccCCC-------------C
Q 016648 246 QAYASGDVFVMPSE-SETLGLVVLE---AMSSGIPVVGVRA-----GGI--------PDIIPEDQD-------------G 295 (385)
Q Consensus 246 ~~~~~adi~v~ps~-~e~~~~~~~E---a~a~G~PvI~s~~-----~~~--------~e~~~~~~~-------------~ 295 (385)
..+..||++|.-.. .+.-+.+.+| |.+.|+||++-.. ++. .+.. +. .
T Consensus 65 ~~i~~aD~viA~ldg~~~D~Gt~~EiG~A~a~gkPVi~~~~D~R~~g~~~~~~~~~~~~~~---e~~f~~~N~~~~G~i~ 141 (162)
T 3ehd_A 65 ENVLASDLLVALLDGPTIDAGVASEIGVAYAKGIPVVALYTDSRQQGADNHQKLDALNEIA---ENQFHYLNLYTVGLIK 141 (162)
T ss_dssp HHHHTCSEEEEECCSSSCCHHHHHHHHHHHHTTCCEEEECCCGGGCCTTCHHHHHHTTSTT---CCCSCCCCHHHHHHHH
T ss_pred HHHHHCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEEcCcccccCCcchhhhhhHHHh---hhhhhhhhHHHhhhHH
Confidence 56999999886432 2223445555 7889999997532 111 1111 10 0
Q ss_pred CeeEeeCCCCHHHHHHHHhHhh
Q 016648 296 KIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 296 ~~g~~~~~~~~~~l~~~i~~ll 317 (385)
.+|.++. +.+++.++|.+.+
T Consensus 142 ~~g~~~~--~~~~~~~~l~~~~ 161 (162)
T 3ehd_A 142 LNGRVVS--SEEDLLEEIKQRL 161 (162)
T ss_dssp TTEEEES--SHHHHHHHHHHTC
T ss_pred hCCeEEe--CHHHHHHHHHHHh
Confidence 1677775 8888888887764
No 117
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=74.44 E-value=19 Score=25.53 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=64.0
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc---CCcEEEec
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS---GIPVVGVR 281 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI~s~ 281 (385)
..+++++.+.+. ...+..........+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|...
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 86 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVIS 86 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEe
Confidence 356777775543 344555554443223333333666655544 577776544 33446666666553 57777543
Q ss_pred CCCC----CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 282 AGGI----PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 282 ~~~~----~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
.... .+.+ ..|..+++..|-+.+++.+++.++++.
T Consensus 87 ~~~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~ 125 (137)
T 3hdg_A 87 AFSEMKYFIKAI---ELGVHLFLPKPIEPGRLMETLEDFRHI 125 (137)
T ss_dssp CCCCHHHHHHHH---HHCCSEECCSSCCHHHHHHHHHHHHHH
T ss_pred cCcChHHHHHHH---hCCcceeEcCCCCHHHHHHHHHHHHHH
Confidence 2221 2233 557788999999999999999988653
No 118
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=74.33 E-value=21 Score=25.42 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=62.6
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEec-ccChHHHHHHHHh--CcEEEEcCCC--CCCcHHHHHHHh--cCCcEEEe
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTG-MLLGEELSQAYAS--GDVFVMPSES--ETLGLVVLEAMS--SGIPVVGV 280 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g-~~~~~~~~~~~~~--adi~v~ps~~--e~~~~~~~Ea~a--~G~PvI~s 280 (385)
..+++++.+.+. ...+.......++...+ .-+.++....+.. .|++++-... +.-|..+++.+. .++|+|.-
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~ii~l 88 (140)
T 3cg0_A 9 LPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLRPDIALVDIMLCGALDGVETAARLAAGCNLPIIFI 88 (140)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCCSSSCHHHHHHHHHHHSCCCEEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCCCCEEEEecCCCCCCCHHHHHHHHHhCCCCCEEEE
Confidence 456666664432 23344444333444443 3333555555543 5887765443 234555555554 47888754
Q ss_pred -cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 281 -RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 281 -~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
..... .+.+ ..|..+++..+-+.+++.+++..++.
T Consensus 89 s~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~ 127 (140)
T 3cg0_A 89 TSSQDVETFQRAK---RVNPFGYLAKPVAADTLHRSIEMAIH 127 (140)
T ss_dssp ECCCCHHHHHHHH---TTCCSEEEEESCCHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHH---hcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 33322 2334 56778899999999999999988764
No 119
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=73.90 E-value=8.5 Score=32.68 Aligned_cols=91 Identities=10% Similarity=0.019 Sum_probs=56.3
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 261 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e 261 (385)
...++.+|--. -|...+.+++.+.++++++-+.+. ..+..++.....++.. + +++.+++...|+++..+...
T Consensus 6 ~~~igiIG~G~--~g~~~~~~~l~~~~~~~l~av~d~-~~~~~~~~a~~~~~~~--~---~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 6 NIKMGMIGLGS--IAQKAYLPILTKSERFEFVGAFTP-NKVKREKICSDYRIMP--F---DSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CCEEEEECCSH--HHHHHTHHHHTSCSSSEEEEEECS-CHHHHHHHHHHHTCCB--C---SCHHHHHTTCSEEEECCCGG
T ss_pred cCcEEEEecCH--HHHHHHHHHHHhCCCeEEEEEECC-CHHHHHHHHHHcCCCC--c---CCHHHHHhcCCEEEEeCCcH
Confidence 35677777422 122246677777788888754433 2334444444333322 2 44555566999999877655
Q ss_pred CCcHHHHHHHhcCCcEEEe
Q 016648 262 TLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 262 ~~~~~~~Ea~a~G~PvI~s 280 (385)
.....+.+++..|++|++-
T Consensus 78 ~h~~~~~~al~~gk~vl~E 96 (308)
T 3uuw_A 78 THYEIIKILLNLGVHVYVD 96 (308)
T ss_dssp GHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHHHHCCCcEEEc
Confidence 5556678899999999864
No 120
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=73.27 E-value=24 Score=25.71 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=60.5
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEecC
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVRA 282 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s~~ 282 (385)
.+++|+.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+|....
T Consensus 15 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 94 (153)
T 3hv2_A 15 PEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASREVDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTG 94 (153)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECC
T ss_pred ceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCCCCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEEC
Confidence 45555554332 333444444444333333333555555544 477776543 3344566665554 4678875433
Q ss_pred -CCC---CcccccCCCC-CeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 283 -GGI---PDIIPEDQDG-KIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 283 -~~~---~e~~~~~~~~-~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
... .+.+ ..| ..+++..|-+.+++..+|..++..
T Consensus 95 ~~~~~~~~~~~---~~g~~~~~l~KP~~~~~l~~~i~~~l~~ 133 (153)
T 3hv2_A 95 DPDLKLIAKAI---NEGEIYRYLSKPWDDQELLLALRQALEH 133 (153)
T ss_dssp CCCHHHHHHHH---HTTCCSEEECSSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---hCCCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 221 2233 455 678999999999999999988653
No 121
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=73.04 E-value=13 Score=28.55 Aligned_cols=108 Identities=13% Similarity=0.195 Sum_probs=62.7
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe-
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 280 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s- 280 (385)
..+++|+.+.+. ...+.......+..+.-.-+.++..+.+.. .|++++-.. .+.-|..+++.+. ..+|||.-
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt 86 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEKFEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLT 86 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSCCSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCCCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEe
Confidence 345666665442 233444444334443333344566565554 477775432 2334666666654 36788753
Q ss_pred cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 281 RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 ~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
..... .+.+ ..|..+++..|-+.+++.++|..++..
T Consensus 87 ~~~~~~~~~~a~---~~Ga~~~l~KP~~~~~L~~~i~~~~~~ 125 (184)
T 3rqi_A 87 GYASIATAVQAV---KDGADNYLAKPANVESILAALQTNASE 125 (184)
T ss_dssp SSCCHHHHHHHH---HHTCSEEEESSCCHHHHHHHTSTTHHH
T ss_pred CCCCHHHHHHHH---HhCHHHheeCCCCHHHHHHHHHHHHHH
Confidence 33322 2333 557789999999999999999988653
No 122
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=72.63 E-value=23 Score=25.25 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=63.0
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh---cCCcEEEe-cC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-RA 282 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~s-~~ 282 (385)
+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+. ..+|+|.. ..
T Consensus 6 ~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 6 RVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSKPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp EEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHCCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESS
T ss_pred eEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEec
Confidence 5677775554 344555555444444444444566555543 6888765432 334566666664 35677643 33
Q ss_pred CCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 283 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 283 ~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
... .+.+ +.|..+++..|.+.+++...+..++.
T Consensus 86 ~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~ 121 (137)
T 3cfy_A 86 GSVDLAVNLI---QKGAEDFLEKPINADRLKTSVALHLK 121 (137)
T ss_dssp CCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH---HCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 322 2233 55778899999999999999987753
No 123
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=72.59 E-value=34 Score=27.11 Aligned_cols=107 Identities=19% Similarity=0.236 Sum_probs=63.9
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe-
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV- 280 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s- 280 (385)
..+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. .++|+|.-
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt 86 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLS 86 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 356677765543 233444443334444433344565555554 577776543 2334666666664 46888753
Q ss_pred cCCC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 281 RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 281 ~~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.... ..+.+ ..|..+++..|.+.+++.+++..++.
T Consensus 87 ~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (233)
T 1ys7_A 87 ARSSVDDRVAGL---EAGADDYLVKPFVLAELVARVKALLR 124 (233)
T ss_dssp CCCTTTCCCTTT---TTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 3222 23344 66788999999999999999988754
No 124
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=72.56 E-value=21 Score=25.07 Aligned_cols=108 Identities=19% Similarity=0.266 Sum_probs=59.4
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc---CCcEEEe-
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS---GIPVVGV- 280 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI~s- 280 (385)
..+++++.+.+. ...+.......+......-+.++..+.+.. .|++++-.. .+.-|..+++.+.. .+|+|..
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t 86 (130)
T 3eod_A 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVIS 86 (130)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCCCSEEEECCC-----CHHHHHHHHHTTCCCCEEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEE
Confidence 456666665442 334444444434333334444666666654 477776443 23346666665543 5777654
Q ss_pred cCCCC---CcccccCCCCCeeEeeCCC-CHHHHHHHHhHhhcC
Q 016648 281 RAGGI---PDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 ~~~~~---~e~~~~~~~~~~g~~~~~~-~~~~l~~~i~~ll~~ 319 (385)
..... .+.+ ..|..+++..|- +.+.+.+.+..++..
T Consensus 87 ~~~~~~~~~~~~---~~g~~~~l~KP~~~~~~l~~~i~~~l~~ 126 (130)
T 3eod_A 87 ATENMADIAKAL---RLGVEDVLLKPVKDLNRLREMVFACLYP 126 (130)
T ss_dssp CCCCHHHHHHHH---HHCCSEEEESCC---CHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHH---HcCCCEEEeCCCCcHHHHHHHHHHHhch
Confidence 33322 2233 557788999998 899999999988764
No 125
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=72.53 E-value=3.7 Score=34.60 Aligned_cols=96 Identities=10% Similarity=0.014 Sum_probs=52.5
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHH----HHHHHHc--CCCeEEecccChHHHHHHHHhCcEEE
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYRE----ELEKMFT--GMPAVFTGMLLGEELSQAYASGDVFV 255 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~----~l~~~~~--~~~i~~~g~~~~~~~~~~~~~adi~v 255 (385)
...++.+|..+ +--..+++++.+.++++++-+-+....+ .+.++.. ..++.+ .+++.+++..+|++|
T Consensus 21 ~irV~V~Ga~G--rMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v-----~~dl~~ll~~aDVvI 93 (288)
T 3ijp_A 21 SMRLTVVGANG--RMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI-----TDDPESAFSNTEGIL 93 (288)
T ss_dssp CEEEEESSTTS--HHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC-----BSCHHHHTTSCSEEE
T ss_pred CeEEEEECCCC--HHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCcee-----eCCHHHHhcCCCEEE
Confidence 34555555221 2235677777777777665443321110 1111111 112222 246677788999999
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEecCCC
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~ 284 (385)
--+..+..-.-+..++..|+|+|+...|.
T Consensus 94 DFT~p~a~~~~~~~~l~~Gv~vViGTTG~ 122 (288)
T 3ijp_A 94 DFSQPQASVLYANYAAQKSLIHIIGTTGF 122 (288)
T ss_dssp ECSCHHHHHHHHHHHHHHTCEEEECCCCC
T ss_pred EcCCHHHHHHHHHHHHHcCCCEEEECCCC
Confidence 66653333334566889999999866654
No 126
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=71.41 E-value=6.1 Score=28.82 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=41.5
Q ss_pred hCcEEEEcCC-CCCCcHHHHHHHhc---CCcEEEe-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 250 SGDVFVMPSE-SETLGLVVLEAMSS---GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 250 ~adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
..|++|+-.. .+.-|..+++.+.. .+|+|.- ..... .+.+ ..|..+++..+-+.+++..+|..++.
T Consensus 67 ~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~ 140 (146)
T 4dad_A 67 AFDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQTLLDAM---RAGVRDVLRWPLEPRALDDALKRAAA 140 (146)
T ss_dssp TCSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHHHHHHHH---TTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHH---HhCCceeEcCCCCHHHHHHHHHHHHh
Confidence 4566665433 22234455554433 6777753 33322 2334 66788999999999999999988865
No 127
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=71.10 E-value=26 Score=25.22 Aligned_cols=109 Identities=21% Similarity=0.199 Sum_probs=63.6
Q ss_pred CCceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh-------cCCc
Q 016648 208 PEARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-------SGIP 276 (385)
Q Consensus 208 ~~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-------~G~P 276 (385)
...+++++.+.+. ...+.......+......-+.++..+.+.. .|++++-.. .+.-|..+++.+. ..+|
T Consensus 13 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~~~p 92 (143)
T 3m6m_D 13 RSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEEDYDAVIVDLHMPGMNGLDMLKQLRVMQASGMRYTP 92 (143)
T ss_dssp --CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHHHHTTCCCCC
T ss_pred ccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhchhccCCCCe
Confidence 3467777775543 334455555444444444444666666554 577776543 3344667777664 2367
Q ss_pred EEEecCCCCC----cccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 277 VVGVRAGGIP----DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 277 vI~s~~~~~~----e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
+|........ +.. +.|..+++..|-+.+++.+++.++...
T Consensus 93 ii~~s~~~~~~~~~~~~---~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 93 VVVLSADVTPEAIRACE---QAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp EEEEESCCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEEeCCCCHHHHHHHH---HcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 8754332222 233 457789999999999999999988653
No 128
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=70.79 E-value=9.2 Score=26.83 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=58.3
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh-----cCCcEEEe-
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS-----SGIPVVGV- 280 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a-----~G~PvI~s- 280 (385)
+++++.+.+. ...+.......+......-+.++....+.. .|++++-.. .+.-|..+++.+. .++|+|.-
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 83 (127)
T 2jba_A 4 RILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLT 83 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSCCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEe
Confidence 4556665432 233333333333333333333454444443 477765433 2334566777765 35787743
Q ss_pred cCCC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 281 RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 281 ~~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.... ..+.+ +.|..+++..|-+.+++.+++..++.
T Consensus 84 ~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 84 ARGEEEDRVRGL---ETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp ETTHHHHHHTTC---CCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHH---hcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 3322 22333 56778899999999999999987754
No 129
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=70.65 E-value=25 Score=24.87 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=60.7
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeE-EecccChHHHHHHHHh-------CcEEEEcCCC-CCCcHHHHHHHhc----CC
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAV-FTGMLLGEELSQAYAS-------GDVFVMPSES-ETLGLVVLEAMSS----GI 275 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~-~~g~~~~~~~~~~~~~-------adi~v~ps~~-e~~~~~~~Ea~a~----G~ 275 (385)
.+++++.+.+. ...+.......+.. +....+.++..+.+.. .|++++-... +.-|..+++.+.. ..
T Consensus 3 ~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~ 82 (133)
T 2r25_B 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYTS 82 (133)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCCS
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCCC
Confidence 45666665543 23344444332321 2222233555555543 5888875432 3346666666642 46
Q ss_pred cEEE-ecCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 276 PVVG-VRAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 276 PvI~-s~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
|+|. |..... .+.+ +.|..+++..|-+.+++.+++.+++.
T Consensus 83 ~ii~lt~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 83 PIVALTAFADDSNIKECL---ESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp CEEEEESCCSHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 8774 433332 2333 56778999999999999999988765
No 130
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=70.41 E-value=31 Score=27.57 Aligned_cols=106 Identities=17% Similarity=0.209 Sum_probs=61.1
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCC-CCCCcHHHHHHHhc--CCcEEEe-cC
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS--GIPVVGV-RA 282 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a~--G~PvI~s-~~ 282 (385)
.+++|+.+.+. ...+.......+..+...-+.++....+. ..|++++-.. .+.-|..+++.+.. ++|+|.- ..
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEEET
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEeCC
Confidence 35666665442 23334433333333332333355555554 3588776543 23346666666643 6888743 33
Q ss_pred CCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 283 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 283 ~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
... .+.+ ..|..+++..|.+.+++.++|..++.
T Consensus 86 ~~~~~~~~~~---~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (238)
T 2gwr_A 86 TDTVDVVLGL---ESGADDYIMKPFKPKELVARVRARLR 121 (238)
T ss_dssp TCCSCHHHHH---HTTCCEEEEESCCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHH---HCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 322 2334 56788999999999999999988764
No 131
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=70.28 E-value=36 Score=26.39 Aligned_cols=108 Identities=19% Similarity=0.244 Sum_probs=59.7
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEec-ccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc--CCcEEE-ec
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTG-MLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS--GIPVVG-VR 281 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g-~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~--G~PvI~-s~ 281 (385)
.+++|+.+.+. ...+.......+....+ .-+.++....+.. .|++++-.. .+.-|..+++.+.. ..|+|. |.
T Consensus 14 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~~dlvi~D~~~p~~~g~~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 14 RRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCSCEEEEEE
T ss_pred ccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEec
Confidence 35555554432 23333333333333332 2222454444433 577776543 23345666666543 347764 33
Q ss_pred CCC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCH
Q 016648 282 AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320 (385)
Q Consensus 282 ~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~ 320 (385)
... ..+.+ ..|..+++..|-+.+++...+..++...
T Consensus 94 ~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 94 FSQRDLVERAR---DAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp GGGHHHHHTTG---GGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---hcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 222 12334 5677899999999999999999987643
No 132
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=69.63 E-value=37 Score=26.31 Aligned_cols=107 Identities=18% Similarity=0.246 Sum_probs=64.6
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe-c
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-R 281 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s-~ 281 (385)
.+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. .++|+|.- .
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~ 84 (208)
T 1yio_A 5 PTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITA 84 (208)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTSCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred CEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 45666665443 334444454444444444444566555544 477776433 2344666666664 36888743 3
Q ss_pred CCC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 282 AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 282 ~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
... ..+.+ ..|..+++..|.+.+++.+++..++..
T Consensus 85 ~~~~~~~~~a~---~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (208)
T 1yio_A 85 HGDIPMTVRAM---KAGAIEFLPKPFEEQALLDAIEQGLQL 122 (208)
T ss_dssp CTTSCCCHHHH---HTTEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---HCCCcEEEeCCCCHHHHHHHHHHHHhh
Confidence 332 22334 567889999999999999999988764
No 133
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=69.29 E-value=25 Score=25.12 Aligned_cols=105 Identities=14% Similarity=0.180 Sum_probs=60.9
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCCCe--EEecccChHHHHHHHHh--------CcEEEEcCC-CCCCcHHHHHHHh----
Q 016648 209 EARIAFIGDGPY-REELEKMFTGMPA--VFTGMLLGEELSQAYAS--------GDVFVMPSE-SETLGLVVLEAMS---- 272 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~~i--~~~g~~~~~~~~~~~~~--------adi~v~ps~-~e~~~~~~~Ea~a---- 272 (385)
..+++++.+.+. ...+.......+. .+...-+.++....+.. .|++++-.. .+.-|..+++.+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 356777775543 2334443332211 22223333677777754 688776544 2334666777765
Q ss_pred -cCCcEEEe-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHh
Q 016648 273 -SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 273 -~G~PvI~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~l 316 (385)
.++|+|.. ..... .+.+ +.|..+++..|-+.+++.+++...
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~kP~~~~~L~~~~~~~ 132 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFE---SLNIRGHLIKPLDYGEAIKLFWIL 132 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHT---TTTCCEEEESSCCHHHHHHHHHHH
T ss_pred ccCCcEEEEeCCCCHHHHHHHH---hcCCCeEEECCCCHHHHHHHHHHH
Confidence 46787754 33322 2333 567789999999999999886654
No 134
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=69.24 E-value=27 Score=24.63 Aligned_cols=109 Identities=15% Similarity=0.102 Sum_probs=60.9
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCC-CCCcHHHHHHHh---cCCcEEE-ecC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVG-VRA 282 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~-s~~ 282 (385)
+++++.+.+. ...+.......+..+...-+.++....+. ..|++++-... +.-|..+++.+. ..+|+|. +..
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEKPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECT
T ss_pred EEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 5666665442 23344444333333333333355555554 35887765432 334566666654 3577764 333
Q ss_pred CCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 283 GGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 283 ~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
..........+.|..+++..|.+.+++...+..++..
T Consensus 85 ~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 85 DEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp TCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 3322211111567789999999999999999888754
No 135
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=69.16 E-value=11 Score=27.70 Aligned_cols=108 Identities=11% Similarity=0.152 Sum_probs=61.0
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCC-Ce-EEecccChHHHHHHHHh---CcEEEEcCCC-CCCcHHHHHHHh---cCCcEE
Q 016648 209 EARIAFIGDGPY-REELEKMFTGM-PA-VFTGMLLGEELSQAYAS---GDVFVMPSES-ETLGLVVLEAMS---SGIPVV 278 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~-~i-~~~g~~~~~~~~~~~~~---adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI 278 (385)
..+++++.+.+. ...+....... +. .+...-+.++....+.. .|++++-... +.-|..+++.+. .++|+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 82 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVA 82 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCCCSEEEECC------CHHHHHHHHHHCTTSEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEE
Confidence 356677765543 33444444332 32 23333334677777765 5787765432 233555666554 367887
Q ss_pred Eec-CCC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 279 GVR-AGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 279 ~s~-~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
... ... ..+.+ ..|..+++..+-+.+++.+++..++..
T Consensus 83 ~ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 83 LISGETDHELIRAAL---EAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp EC-----CHHHHHHH---HTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred EEeCCCCHHHHHHHH---HccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 542 222 12333 557788999999999999999988764
No 136
>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1
Probab=68.99 E-value=11 Score=32.58 Aligned_cols=82 Identities=6% Similarity=-0.074 Sum_probs=47.7
Q ss_pred HHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEeccc-------------ChHHHHHHHHhCcEEEEcCCCCCCcH
Q 016648 199 FLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGML-------------LGEELSQAYASGDVFVMPSESETLGL 265 (385)
Q Consensus 199 ~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~-------------~~~~~~~~~~~adi~v~ps~~e~~~~ 265 (385)
.+++++...+++++.-+.+.. .+....+.+..++..+|.. -..+..+++..+|+++..+-....-.
T Consensus 16 ~~~r~l~~~~~~elvav~d~~-~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~~~h~~ 94 (334)
T 2czc_A 16 RVAYAVTKQDDMELIGITKTK-PDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIGAK 94 (334)
T ss_dssp HHHHHHHTCTTEEEEEEEESS-CSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCSTTHHHH
T ss_pred HHHHHHhcCCCCEEEEEEcCC-HHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEEEECCCccccHH
Confidence 577888888888887766432 2233333333332222211 11245556678999987764333223
Q ss_pred HHHHHHhcCCcEEEec
Q 016648 266 VVLEAMSSGIPVVGVR 281 (385)
Q Consensus 266 ~~~Ea~a~G~PvI~s~ 281 (385)
....++..|++||++.
T Consensus 95 ~a~~~l~aGk~Vi~sa 110 (334)
T 2czc_A 95 NKPLYEKAGVKAIFQG 110 (334)
T ss_dssp HHHHHHHHTCEEEECT
T ss_pred HHHHHHHcCCceEeec
Confidence 3457888999999753
No 137
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=68.87 E-value=25 Score=30.08 Aligned_cols=93 Identities=13% Similarity=0.077 Sum_probs=56.7
Q ss_pred HHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEecCCCCCcc-cc-cCCC--CCeeEeeCCCCHHHHHHHHhHh
Q 016648 242 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDI-IP-EDQD--GKIGYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~-~~-~~~~--~~~g~~~~~~~~~~l~~~i~~l 316 (385)
..-..-+++||++|.-.. .|+|-.+++++.. +.++|....+ +..+ .. +..+ .+.-+..++.+...+++.|.+.
T Consensus 86 p~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~g-i~~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~~ 163 (321)
T 1xvl_A 86 PSDIVKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTEG-IEPIPIADGPYTDKPNPHAWMSPRNALVYVENIRQA 163 (321)
T ss_dssp HHHHHHHHTCSEEEECCTTSSTTHHHHHHTSS-SCCEEETTTT-CCCCBCCSSSSTTSBCCCGGGSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCChHHHHHHHHHhcC-CCcEEEccCC-cccccccccCCCCCCCCCcCCCHHHHHHHHHHHHHH
Confidence 344466899999998654 6788888888776 6777654322 2111 00 0001 1233455666777777777776
Q ss_pred hc--CHHHHHHHHHHHHHHHHh
Q 016648 317 LY--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 317 l~--~~~~~~~~~~~a~~~~~~ 336 (385)
|. ||+....+.+|+..+.++
T Consensus 164 L~~~DP~~a~~Y~~Na~~~~~~ 185 (321)
T 1xvl_A 164 FVELDPDNAKYYNANAAVYSEQ 185 (321)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHCcccHHHHHHHHHHHHHH
Confidence 65 777667777777666543
No 138
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=68.86 E-value=26 Score=24.20 Aligned_cols=105 Identities=15% Similarity=0.175 Sum_probs=60.4
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh--cCCcEEEe-cC
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--SGIPVVGV-RA 282 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a--~G~PvI~s-~~ 282 (385)
.+++++.+.+. ...+.......+......-+..+....+.. .|++++-... +.-|..+++.+. ..+|+|.. ..
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGR 83 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESC
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEECC
Confidence 35666665443 334445454444444333334566555554 5777765432 233555555553 46777743 33
Q ss_pred CCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 283 GGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 283 ~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
.... +.+ +.|..+++..|-+.+++...+..++
T Consensus 84 ~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~ 118 (123)
T 1xhf_A 84 DNEVDKILGL---EIGADDYITKPFNPRELTIRARNLL 118 (123)
T ss_dssp CSHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CChHHHHHHH---hcCcceEEeCCCCHHHHHHHHHHHH
Confidence 3222 223 4577889999999999999987764
No 139
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=68.76 E-value=30 Score=25.02 Aligned_cols=75 Identities=24% Similarity=0.293 Sum_probs=47.6
Q ss_pred HHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc---CCcEEEe-cCCC---CCcccccCCCCCeeEeeCCCCHHHHHH
Q 016648 242 EELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS---GIPVVGV-RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLS 311 (385)
Q Consensus 242 ~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI~s-~~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~ 311 (385)
++....+.. .|++++-.. .+.-|..+++.+.. .+|+|.- .... ..+.+ ..|..+++..+.+.+++.+
T Consensus 56 ~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~~~~~---~~g~~~~l~Kp~~~~~l~~ 132 (150)
T 4e7p_A 56 QEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRAGYFERAV---KAGVDAYVLKERSIADLMQ 132 (150)
T ss_dssp HHHHHHHTTSCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHH---HTTCSEEEETTSCHHHHHH
T ss_pred HHHHHHhhccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHH---HCCCcEEEecCCCHHHHHH
Confidence 455444443 466666443 33445666666543 5777643 3332 22334 5677899999999999999
Q ss_pred HHhHhhcC
Q 016648 312 KLEPLLYN 319 (385)
Q Consensus 312 ~i~~ll~~ 319 (385)
+|..++..
T Consensus 133 ~i~~~~~~ 140 (150)
T 4e7p_A 133 TLHTVLEG 140 (150)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHcC
Confidence 99998864
No 140
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=68.41 E-value=37 Score=26.72 Aligned_cols=106 Identities=18% Similarity=0.194 Sum_probs=62.0
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe-c
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-R 281 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s-~ 281 (385)
.+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+|.- .
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~ 82 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTA 82 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEES
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeC
Confidence 35666665442 233444444334433333344565555554 578776543 2334666666664 36788754 3
Q ss_pred CCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 282 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 282 ~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.... .+.+ ..|..+++..|.+.+++.+++..++.
T Consensus 83 ~~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~ 119 (225)
T 1kgs_A 83 LSDVEYRVKGL---NMGADDYLPKPFDLRELIARVRALIR 119 (225)
T ss_dssp SCHHHHHHHTC---CCCCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHH---hCCccEEEeCCCCHHHHHHHHHHHHh
Confidence 3321 2333 56788999999999999999987753
No 141
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=68.37 E-value=14 Score=26.60 Aligned_cols=108 Identities=9% Similarity=0.080 Sum_probs=60.8
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCCCCCcHHHHHHHh---cCCcEEEe-cC
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMS---SGIPVVGV-RA 282 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a---~G~PvI~s-~~ 282 (385)
.+++++.+.+. ...+.......++.+...-+.++....+.. .|++++-...+.-|..+++.+. .++|+|.. ..
T Consensus 5 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~d~~~~~~g~~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 5 PTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREKIDLVFVDVFEGEESLNLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp CEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSCCSEEEEECTTTHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccCCCEEEEeCCCCCcHHHHHHHHHHHCCCCCEEEEECC
Confidence 45666665432 334445444444444433344566666554 4776665421222444555443 35787754 33
Q ss_pred CCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCH
Q 016648 283 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320 (385)
Q Consensus 283 ~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~ 320 (385)
... .+.+ ..|..+++..+-+.+++.+.+..++...
T Consensus 85 ~~~~~~~~~~---~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 85 VDKDLIINSV---KAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp CCHHHHHHHH---HHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHH---HCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 322 2223 4466788999999999999999987643
No 142
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=68.14 E-value=12 Score=29.00 Aligned_cols=68 Identities=16% Similarity=0.090 Sum_probs=43.1
Q ss_pred hCcEEEEcCCCCCC-cHHHHHHHh---cCCcEEEe-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHH
Q 016648 250 SGDVFVMPSESETL-GLVVLEAMS---SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQE 321 (385)
Q Consensus 250 ~adi~v~ps~~e~~-~~~~~Ea~a---~G~PvI~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~ 321 (385)
..|++++-....+. |. +.+.+. ..+|+|.- ..... .+.+ +.|..+++..|-+.+++...+..++....
T Consensus 52 ~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~~~~~~a~---~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 52 PVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVALVEYESPAVLSQII---ELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp CCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEEECCCSHHHHHHHH---HHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEEEcCCChHHHHHHH---HcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 46887765443332 33 555554 45788743 33322 2223 45778899999999999999998876443
No 143
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=67.61 E-value=27 Score=23.96 Aligned_cols=104 Identities=13% Similarity=0.275 Sum_probs=59.6
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe-cC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RA 282 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s-~~ 282 (385)
+++++.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+|.. ..
T Consensus 2 ~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHIPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESC
T ss_pred eEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecC
Confidence 4555654432 233444444334443333334566555554 577776433 2334566676665 35777743 33
Q ss_pred CCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 283 GGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 283 ~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
... .+.+ +.|..+++..|-+.+++...+..++
T Consensus 82 ~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~ 116 (121)
T 2pl1_A 82 ESWQDKVEVL---SAGADDYVTKPFHIEEVMARMQALM 116 (121)
T ss_dssp CCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---HcCccceEECCCCHHHHHHHHHHHH
Confidence 322 2333 5677899999999999999998764
No 144
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=67.38 E-value=28 Score=24.50 Aligned_cols=107 Identities=13% Similarity=0.199 Sum_probs=62.4
Q ss_pred ceEEEEeCCc-cHHHHHHHHcCCCeEEec-ccChHHHHHHHH--hCcEEEEcCC-CCCCcHHHHHHHhc---CCcEEEe-
Q 016648 210 ARIAFIGDGP-YREELEKMFTGMPAVFTG-MLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS---GIPVVGV- 280 (385)
Q Consensus 210 ~~l~i~G~g~-~~~~l~~~~~~~~i~~~g-~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI~s- 280 (385)
.+++++.+.+ ....+.....+.+....+ .-+.++....+. ..|++++-.. .+.-|..+++.+.. .+|+|..
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s 81 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVS 81 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcCCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEe
Confidence 3566666544 234455555544544442 222355555543 3577776544 33446666666553 5677643
Q ss_pred cCCC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 281 RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 ~~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
.... ..+.+ ..|..+++..|-+.+++.+++..++..
T Consensus 82 ~~~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 82 AKNDHFYGKHCA---DAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp CC---CTHHHHH---HTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHH---HhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 3322 22334 567788999999999999999988764
No 145
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=67.18 E-value=33 Score=24.88 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=66.6
Q ss_pred CceEEEEeCCcc-HHHHHHHHcC-CCeEEec-ccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEE
Q 016648 209 EARIAFIGDGPY-REELEKMFTG-MPAVFTG-MLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVG 279 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~-~~i~~~g-~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~ 279 (385)
..+++++.+.+. ...+...... .+....+ .-+.++....+.. .|++++-.. .+.-|..+++.+. .++|+|.
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETTPDIVVMDLTLPGPGGIEATRHIRQWDGAARILI 84 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEE
Confidence 456777775543 3455555555 4555553 3334666666665 477776543 2334556666554 3678875
Q ss_pred e-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 280 V-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 280 s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
. ..... .+.+ ..|..+++..+.+.+++.++|..++..
T Consensus 85 ls~~~~~~~~~~~~---~~g~~~~l~kp~~~~~L~~~i~~~~~~ 125 (153)
T 3cz5_A 85 FTMHQGSAFALKAF---EAGASGYVTKSSDPAELVQAIEAILAG 125 (153)
T ss_dssp EESCCSHHHHHHHH---HTTCSEEEETTSCTTHHHHHHHHHTTT
T ss_pred EECCCCHHHHHHHH---HCCCcEEEecCCCHHHHHHHHHHHHhC
Confidence 4 33322 2233 567788999999999999999988763
No 146
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=67.06 E-value=27 Score=30.04 Aligned_cols=90 Identities=18% Similarity=0.202 Sum_probs=57.9
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCC
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 260 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~ 260 (385)
..++.+|--.- | ...++++.+.++++++-+.+. ..+..+......++... .++.++++ ..|+++..+..
T Consensus 5 ~rvgiiG~G~~--g-~~~~~~l~~~~~~~l~av~d~-~~~~~~~~a~~~g~~~~-----~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRI--G-HVHAANIAANPDLELVVIADP-FIEGAQRLAEANGAEAV-----ASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHH--H-HHHHHHHHHCTTEEEEEEECS-SHHHHHHHHHTTTCEEE-----SSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHH--H-HHHHHHHHhCCCcEEEEEECC-CHHHHHHHHHHcCCcee-----CCHHHHhcCCCCCEEEEeCCc
Confidence 45777775221 1 246677777788777754432 33455555555554332 45666787 78999887765
Q ss_pred CCCcHHHHHHHhcCCcEEEec
Q 016648 261 ETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
....-.+.+|+..|++|++-+
T Consensus 76 ~~h~~~~~~al~~gk~v~~EK 96 (344)
T 3euw_A 76 STHVDLITRAVERGIPALCEK 96 (344)
T ss_dssp GGHHHHHHHHHHTTCCEEECS
T ss_pred hhhHHHHHHHHHcCCcEEEEC
Confidence 555566789999999999743
No 147
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=66.83 E-value=28 Score=23.81 Aligned_cols=105 Identities=16% Similarity=0.194 Sum_probs=57.9
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCC-CCCcHHHHHHHh--cCCcEEEec-CC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS--SGIPVVGVR-AG 283 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a--~G~PvI~s~-~~ 283 (385)
+++++.+.+. ...+.......+......-+.++....+. ..|++++-... +.-|..+++.+. ..+|+|... ..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (120)
T 2a9o_A 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKD 82 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEESCC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEecCC
Confidence 4555654432 23334433333333333333355555444 36787764432 334555555553 567877543 22
Q ss_pred CCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 284 GIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 284 ~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
... ..+ +.|..+++..|.+.+++.+.+..++.
T Consensus 83 ~~~~~~~~~---~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 83 SEFDKVIGL---ELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp SHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred chHHHHHHH---hCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 221 223 45778899999999999999987754
No 148
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=66.01 E-value=8.9 Score=27.49 Aligned_cols=107 Identities=11% Similarity=0.212 Sum_probs=62.2
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CC--CCcHHHHHHHhc---CCcEEEe
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SE--TLGLVVLEAMSS---GIPVVGV 280 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e--~~~~~~~Ea~a~---G~PvI~s 280 (385)
.+++|+.+.+. ...+.......++.+...-+.++....+.. .|++++-.. .+ .-|..+++.+.. .+|+|.-
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~ 86 (136)
T 3kto_A 7 PIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDDAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVM 86 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTTEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccCCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEE
Confidence 45666665443 344555555444444433333555444443 466665433 23 335556665543 6788753
Q ss_pred -cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 281 -RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 -~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
..... .+.+ ..|..+++..|-+.+++.++|.+++..
T Consensus 87 s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~~~~ 126 (136)
T 3kto_A 87 ASSSDIPTAVRAM---RASAADFIEKPFIEHVLVHDVQQIING 126 (136)
T ss_dssp ESSCCHHHHHHHH---HTTCSEEEESSBCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHH---HcChHHheeCCCCHHHHHHHHHHHHhc
Confidence 33322 2334 567889999999999999999988653
No 149
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=65.98 E-value=22 Score=31.41 Aligned_cols=95 Identities=8% Similarity=-0.114 Sum_probs=54.8
Q ss_pred CCcEEEEEeecccc-ccHHHHHHHHHhCCCceEEE-EeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHh-------C
Q 016648 181 DKPLIVHVGRLGVE-KSLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS-------G 251 (385)
Q Consensus 181 ~~~~i~~~G~~~~~-k~~~~l~~a~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~-------a 251 (385)
++..++.+|.-... -| ...+.++...++++++- +. ....+..++...+.++.-. ....++.++++. .
T Consensus 11 ~~~rvgiiG~G~~~~ig-~~h~~~~~~~~~~~lva~v~-d~~~~~a~~~a~~~g~~~~--~~~~~~~~ll~~~~~~~~~v 86 (398)
T 3dty_A 11 QPIRWAMVGGGSQSQIG-YIHRCAALRDNTFVLVAGAF-DIDPIRGSAFGEQLGVDSE--RCYADYLSMFEQEARRADGI 86 (398)
T ss_dssp SCEEEEEEECCTTCSSH-HHHHHHHHGGGSEEEEEEEC-CSSHHHHHHHHHHTTCCGG--GBCSSHHHHHHHHTTCTTCC
T ss_pred CcceEEEEcCCccchhH-HHHHHHHhhCCCeEEEEEEe-CCCHHHHHHHHHHhCCCcc--eeeCCHHHHHhcccccCCCC
Confidence 34678888844311 11 13345556666666653 32 3334455555554443100 112455666665 8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 252 DVFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 252 di~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
|+++..+....-.-.+.+|+..|++|++
T Consensus 87 D~V~i~tp~~~H~~~~~~al~aGkhVl~ 114 (398)
T 3dty_A 87 QAVSIATPNGTHYSITKAALEAGLHVVC 114 (398)
T ss_dssp SEEEEESCGGGHHHHHHHHHHTTCEEEE
T ss_pred CEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 9988877655555668899999999997
No 150
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=65.64 E-value=33 Score=24.29 Aligned_cols=75 Identities=9% Similarity=0.141 Sum_probs=45.8
Q ss_pred HHHHHHHHh---CcEEEEcCCC-CCCcHHHHHHHhc---CCcEEEe--cCCCCCcccccCCCCCeeEeeCCCCHHHHHHH
Q 016648 242 EELSQAYAS---GDVFVMPSES-ETLGLVVLEAMSS---GIPVVGV--RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSK 312 (385)
Q Consensus 242 ~~~~~~~~~---adi~v~ps~~-e~~~~~~~Ea~a~---G~PvI~s--~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~ 312 (385)
++....+.. .|++++-... +.-|..+++.+.. ++|+|.. ....... .. .- ..+++..+-+.+++.+.
T Consensus 49 ~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~-~~--~~-~~~~l~KP~~~~~L~~~ 124 (138)
T 2b4a_A 49 SAFFQHRSQLSTCDLLIVSDQLVDLSIFSLLDIVKEQTKQPSVLILTTGRHELIE-SS--EH-NLSYLQKPFAISELRAA 124 (138)
T ss_dssp HHHHHTGGGGGSCSEEEEETTCTTSCHHHHHHHHTTSSSCCEEEEEESCC--CCC-CS--SS-CEEEEESSCCHHHHHHH
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCCCHHH-HH--HH-HHheeeCCCCHHHHHHH
Confidence 454444433 5777765432 3346677777754 5777643 3333222 21 11 67889999999999999
Q ss_pred HhHhhcCH
Q 016648 313 LEPLLYNQ 320 (385)
Q Consensus 313 i~~ll~~~ 320 (385)
+..++...
T Consensus 125 i~~~~~~~ 132 (138)
T 2b4a_A 125 IDYHKPSM 132 (138)
T ss_dssp HHHTCCC-
T ss_pred HHHHHHhc
Confidence 99987653
No 151
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=64.72 E-value=25 Score=30.11 Aligned_cols=89 Identities=11% Similarity=0.137 Sum_probs=56.6
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCC
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 260 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~ 260 (385)
..++.+|--.- | ...++++.+.++++++-+.+. ..+..++.....++. + .++.++++ ..|+++..+..
T Consensus 4 ~~vgiiG~G~~--g-~~~~~~l~~~~~~~l~av~d~-~~~~~~~~~~~~~~~---~---~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGRI--G-KVHAKAVSGNADARLVAVADA-FPAAAEAIAGAYGCE---V---RTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSHH--H-HHHHHHHHHCTTEEEEEEECS-SHHHHHHHHHHTTCE---E---CCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCHH--H-HHHHHHHhhCCCcEEEEEECC-CHHHHHHHHHHhCCC---c---CCHHHHhcCCCCCEEEEeCCc
Confidence 34666664211 1 246667777788877754432 334455555555554 2 45666677 78999887765
Q ss_pred CCCcHHHHHHHhcCCcEEEec
Q 016648 261 ETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
......+.+++..|++|++-+
T Consensus 74 ~~h~~~~~~al~~gk~v~~EK 94 (331)
T 4hkt_A 74 DTHADLIERFARAGKAIFCEK 94 (331)
T ss_dssp GGHHHHHHHHHHTTCEEEECS
T ss_pred hhHHHHHHHHHHcCCcEEEec
Confidence 555566788999999999743
No 152
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=64.37 E-value=31 Score=23.58 Aligned_cols=104 Identities=17% Similarity=0.300 Sum_probs=58.4
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEec-ccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh---cCCcEEEe-c
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTG-MLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV-R 281 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g-~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~s-~ 281 (385)
+++++.+.+. ...+.......+..... .-+.++....+.. .|++++-... +.-|..+++.+. .+.|+|.. .
T Consensus 4 ~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~ 83 (120)
T 1tmy_A 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSA 83 (120)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEEC
T ss_pred eEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeC
Confidence 5566665442 23344444433444222 2233555555443 5777764332 233556666553 46787643 3
Q ss_pred CCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 282 AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 282 ~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
.... .+.. +.|..+++..|.+.+++.+.+.+++
T Consensus 84 ~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 84 MGQQAMVIEAI---KAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp TTCHHHHHHHH---HTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred CCCHHHHHHHH---HhCcceeEeCCCCHHHHHHHHHHHh
Confidence 3332 2233 5677889999999999999988764
No 153
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=64.02 E-value=36 Score=24.18 Aligned_cols=107 Identities=15% Similarity=0.073 Sum_probs=61.3
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh--------cCCcE
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS--------SGIPV 277 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a--------~G~Pv 277 (385)
.+++++.+.+. ...+.......+..+.-.-+.++....+.. .|++++-... +.-|..+++.+. ..+|+
T Consensus 11 ~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~~~i 90 (140)
T 3c97_A 11 LSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKRASI 90 (140)
T ss_dssp CEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSCCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCCCCC
T ss_pred ceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCceEE
Confidence 46667765543 334444444433322222333566555554 5888765442 334566666664 24666
Q ss_pred EEe-cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 278 VGV-RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 278 I~s-~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
|.. ......... ..|..+++..|.+.+++.+++..++..
T Consensus 91 i~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~ 130 (140)
T 3c97_A 91 IAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSE 130 (140)
T ss_dssp EEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCC
Confidence 643 333323333 346678999999999999999888653
No 154
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=63.58 E-value=18 Score=28.65 Aligned_cols=103 Identities=15% Similarity=0.121 Sum_probs=57.5
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCCCCCcHHHHHHHhc---CCcEEEe-cCC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESETLGLVVLEAMSS---GIPVVGV-RAG 283 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a~---G~PvI~s-~~~ 283 (385)
+++++.+.+. ...+.......++.+...-+.++....+.. .|++++| +.-|..+++.+.. .+|+|.- ...
T Consensus 2 ~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~dlvilp---~~~g~~~~~~lr~~~~~~~ii~lt~~~ 78 (223)
T 2hqr_A 2 RVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRNYDLVMVS---DKNALSFVSRIKEKHSSIVVLVSSDNP 78 (223)
T ss_dssp CEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSCCSEEEEC---CTTHHHHHHHHHHHCTTSEEEEEESSC
T ss_pred EEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCCCCEEEeC---CCCHHHHHHHHHhCCCCCcEEEEECCC
Confidence 3455554432 233444444333333333333666666554 4777733 2335555555542 6787753 333
Q ss_pred CC---CcccccCCCCCeeEeeCCC-CHHHHHHHHhHhhcC
Q 016648 284 GI---PDIIPEDQDGKIGYLFNPG-DLDDCLSKLEPLLYN 319 (385)
Q Consensus 284 ~~---~e~~~~~~~~~~g~~~~~~-~~~~l~~~i~~ll~~ 319 (385)
.. .+.+ ..|..+++..|. +.+++.++|..++..
T Consensus 79 ~~~~~~~~~---~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 79 TSEEEVHAF---EQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp CHHHHHHHH---HHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred CHHHHHHHH---HcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 22 2223 457788999999 999999999887653
No 155
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=62.65 E-value=25 Score=31.34 Aligned_cols=97 Identities=8% Similarity=-0.060 Sum_probs=55.2
Q ss_pred CCcEEEEEeecccc-ccHHHHHHHHHhCCCceEEE-EeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHh-------C
Q 016648 181 DKPLIVHVGRLGVE-KSLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS-------G 251 (385)
Q Consensus 181 ~~~~i~~~G~~~~~-k~~~~l~~a~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~-------a 251 (385)
.+..++.+|.-... -| ...+.++...++++++- +.+ ...+..++...+.++.-. ....++.++++. .
T Consensus 36 ~~~rvgiiG~G~~~~ig-~~h~~~~~~~~~~~lva~v~d-~~~~~a~~~a~~~g~~~~--~~~~~~~~ll~~~~~~~~~v 111 (417)
T 3v5n_A 36 KRIRLGMVGGGSGAFIG-AVHRIAARLDDHYELVAGALS-STPEKAEASGRELGLDPS--RVYSDFKEMAIREAKLKNGI 111 (417)
T ss_dssp CCEEEEEESCC--CHHH-HHHHHHHHHTSCEEEEEEECC-SSHHHHHHHHHHHTCCGG--GBCSCHHHHHHHHHHCTTCC
T ss_pred CcceEEEEcCCCchHHH-HHHHHHHhhCCCcEEEEEEeC-CCHHHHHHHHHHcCCCcc--cccCCHHHHHhcccccCCCC
Confidence 34678888843200 11 23345566667777663 332 333444444443332100 112455666665 8
Q ss_pred cEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 252 DVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 252 di~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
|+++..+....-.-.+.+|+..|++|++-+
T Consensus 112 D~V~I~tp~~~H~~~~~~al~aGkhVl~EK 141 (417)
T 3v5n_A 112 EAVAIVTPNHVHYAAAKEFLKRGIHVICDK 141 (417)
T ss_dssp SEEEECSCTTSHHHHHHHHHTTTCEEEEES
T ss_pred cEEEECCCcHHHHHHHHHHHhCCCeEEEEC
Confidence 999887766655667889999999999753
No 156
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=62.03 E-value=14 Score=30.17 Aligned_cols=75 Identities=15% Similarity=0.142 Sum_probs=40.7
Q ss_pred eEEEEe-CCccHHHHHHHHc-CCCeEEecccCh-HHHHHHHH-hCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCC
Q 016648 211 RIAFIG-DGPYREELEKMFT-GMPAVFTGMLLG-EELSQAYA-SGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGI 285 (385)
Q Consensus 211 ~l~i~G-~g~~~~~l~~~~~-~~~i~~~g~~~~-~~~~~~~~-~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~ 285 (385)
++.++| .|..-..+.+.+. ..+..+.+-+.. +++.+++. .+|++|--+..+..-.-+..++..|+|+|+...|..
T Consensus 2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a~~~g~~~VigTTG~~ 80 (245)
T 1p9l_A 2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLLTDGNTEVVIDFTHPDVVMGNLEFLIDNGIHAVVGTTGFT 80 (245)
T ss_dssp EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHHHHTTCCEEEECSCTTTHHHHHHHHHHTTCEEEECCCCCC
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHHhccCCcEEEEccChHHHHHHHHHHHHcCCCEEEcCCCCC
Confidence 455555 2443333333332 223444333322 33444554 789999555555544445567889999998655533
No 157
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=61.55 E-value=35 Score=23.73 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=20.7
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhC---------CCceEEEEeCCcc
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRL---------PEARIAFIGDGPY 220 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~---------~~~~l~i~G~g~~ 220 (385)
....|++.|.+... .-+.+.+.++.+ .+..++|+|....
T Consensus 34 ~G~~~v~TG~l~~~-~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g 81 (109)
T 2k6g_A 34 EGLIFVITGVLESI-ERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSG 81 (109)
T ss_dssp TTCEEEEESBCSSC-CHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCC
T ss_pred CCCEEEEeeeCCCC-CHHHHHHHHHHcCCEeeCcccCCceEEEECCCCC
Confidence 45678888887431 122333333333 3566777775443
No 158
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=61.52 E-value=21 Score=30.87 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=57.2
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcC
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPS 258 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps 258 (385)
.+..++.+|.-.. |...+++++.+.++++++-+.+. ..+..++...+.++... .++.++++ ..|+++..+
T Consensus 26 ~~~rigiIG~G~~--g~~~~~~~l~~~~~~~l~av~d~-~~~~~~~~a~~~g~~~~-----~~~~~ll~~~~~D~V~i~t 97 (350)
T 3rc1_A 26 NPIRVGVIGCADI--AWRRALPALEAEPLTEVTAIASR-RWDRAKRFTERFGGEPV-----EGYPALLERDDVDAVYVPL 97 (350)
T ss_dssp CCEEEEEESCCHH--HHHTHHHHHHHCTTEEEEEEEES-SHHHHHHHHHHHCSEEE-----ESHHHHHTCTTCSEEEECC
T ss_pred CceEEEEEcCcHH--HHHHHHHHHHhCCCeEEEEEEcC-CHHHHHHHHHHcCCCCc-----CCHHHHhcCCCCCEEEECC
Confidence 3567888885321 22245677777888887744432 23444444444444432 45556665 579988877
Q ss_pred CCCCCcHHHHHHHhcCCcEEEe
Q 016648 259 ESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
....-.-.+.+|+..|++|++-
T Consensus 98 p~~~h~~~~~~al~aGk~Vl~E 119 (350)
T 3rc1_A 98 PAVLHAEWIDRALRAGKHVLAE 119 (350)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEE
T ss_pred CcHHHHHHHHHHHHCCCcEEEe
Confidence 6555556678999999999874
No 159
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=61.03 E-value=22 Score=30.64 Aligned_cols=92 Identities=12% Similarity=0.014 Sum_probs=58.6
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCe-EEecccChHHHHHHHHh--CcEEEEc
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYAS--GDVFVMP 257 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i-~~~g~~~~~~~~~~~~~--adi~v~p 257 (385)
+...++.+|.-.- +....+.+++..++++++-+.+. ..+..++.+++.++ .. ..++.++++. .|+++..
T Consensus 22 ~mirigiIG~G~i--g~~~~~~~~~~~~~~~lvav~d~-~~~~a~~~a~~~g~~~~-----y~d~~ell~~~~iDaV~I~ 93 (350)
T 4had_A 22 SMLRFGIISTAKI--GRDNVVPAIQDAENCVVTAIASR-DLTRAREMADRFSVPHA-----FGSYEEMLASDVIDAVYIP 93 (350)
T ss_dssp CCEEEEEESCCHH--HHHTHHHHHHHCSSEEEEEEECS-SHHHHHHHHHHHTCSEE-----ESSHHHHHHCSSCSEEEEC
T ss_pred CccEEEEEcChHH--HHHHHHHHHHhCCCeEEEEEECC-CHHHHHHHHHHcCCCee-----eCCHHHHhcCCCCCEEEEe
Confidence 4467888884321 22335678888898888766543 33445555554443 11 1455666765 6888877
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEe
Q 016648 258 SESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 258 s~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
+....-.-.+.+|+.+|++|++-
T Consensus 94 tP~~~H~~~~~~al~aGkhVl~E 116 (350)
T 4had_A 94 LPTSQHIEWSIKAADAGKHVVCE 116 (350)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCCchhHHHHHHHHhcCCEEEEe
Confidence 76555556678999999999974
No 160
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=60.96 E-value=40 Score=26.32 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=39.7
Q ss_pred hCcEEEEcCC-CCCCcHHHHHHHh-------cCCcEEEec-CC-CC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHh
Q 016648 250 SGDVFVMPSE-SETLGLVVLEAMS-------SGIPVVGVR-AG-GI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 250 ~adi~v~ps~-~e~~~~~~~Ea~a-------~G~PvI~s~-~~-~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~l 316 (385)
..|++|+-.. .+.-|..+++.+. ..+|||... .. .. .+.+ ..|..+++..|-+ +|.++|..+
T Consensus 119 ~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~---~~Ga~~~l~KP~~--~L~~~i~~~ 193 (206)
T 3mm4_A 119 PFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETI---QAGMDAFLDKSLN--QLANVIREI 193 (206)
T ss_dssp SCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHH---HHTCSEEEETTCT--THHHHHHHH
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHH---hCCCCEEEcCcHH--HHHHHHHHH
Confidence 3577776543 2334666666654 457887543 22 21 1233 4577888998877 899999888
Q ss_pred hcCH
Q 016648 317 LYNQ 320 (385)
Q Consensus 317 l~~~ 320 (385)
+...
T Consensus 194 l~~~ 197 (206)
T 3mm4_A 194 ESKR 197 (206)
T ss_dssp C---
T ss_pred Hhhh
Confidence 7643
No 161
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=60.86 E-value=56 Score=27.96 Aligned_cols=91 Identities=10% Similarity=0.033 Sum_probs=55.6
Q ss_pred CCcEEEEEeeccccccHHHHHHHHH-hCCCceEEEEeCCccHHHHHHHHcCCCe-EEecccChHHHHHHHH--hCcEEEE
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMD-RLPEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYA--SGDVFVM 256 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~-~~~~~~l~i~G~g~~~~~l~~~~~~~~i-~~~g~~~~~~~~~~~~--~adi~v~ 256 (385)
+...++.+|--.- | ...++++. ..++++++.+.+. ..+..+....+.++ ... .++.++++ .+|+++.
T Consensus 7 ~~~~v~iiG~G~i--g-~~~~~~l~~~~~~~~~vav~d~-~~~~~~~~a~~~g~~~~~-----~~~~~~l~~~~~D~V~i 77 (346)
T 3cea_A 7 KPLRAAIIGLGRL--G-ERHARHLVNKIQGVKLVAACAL-DSNQLEWAKNELGVETTY-----TNYKDMIDTENIDAIFI 77 (346)
T ss_dssp CCEEEEEECCSTT--H-HHHHHHHHHTCSSEEEEEEECS-CHHHHHHHHHTTCCSEEE-----SCHHHHHTTSCCSEEEE
T ss_pred CcceEEEEcCCHH--H-HHHHHHHHhcCCCcEEEEEecC-CHHHHHHHHHHhCCCccc-----CCHHHHhcCCCCCEEEE
Confidence 4456888875322 2 24556666 6677776655433 33445555555443 222 34556676 6899988
Q ss_pred cCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 257 PSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 257 ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
.+........+.+++..|++|++-
T Consensus 78 ~tp~~~h~~~~~~al~~G~~v~~e 101 (346)
T 3cea_A 78 VAPTPFHPEMTIYAMNAGLNVFCE 101 (346)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred eCChHhHHHHHHHHHHCCCEEEEc
Confidence 776544455677899999999974
No 162
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=60.13 E-value=43 Score=23.79 Aligned_cols=107 Identities=12% Similarity=0.145 Sum_probs=60.7
Q ss_pred CceEEEEeCCcc-HHHHHHHHcCC-CeEEec-ccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc---CCcEE-
Q 016648 209 EARIAFIGDGPY-REELEKMFTGM-PAVFTG-MLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS---GIPVV- 278 (385)
Q Consensus 209 ~~~l~i~G~g~~-~~~l~~~~~~~-~i~~~g-~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI- 278 (385)
..+++++.+.+. ...+....... ++...+ .-+.++....+.. .|++++-.. .+.-|..+++.+.. ..|+|
T Consensus 9 ~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 88 (143)
T 2qv0_A 9 KMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNKVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVF 88 (143)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCCCSEEEECSSCSSSCHHHHHHHHTTSTTCCEEEE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHccCCCceEEE
Confidence 356677765543 23344433322 444332 2233555555554 577776543 23446677777754 34554
Q ss_pred EecCC-CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 279 GVRAG-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 279 ~s~~~-~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.+... ...+.+ ..|..+++..|-+.+++.+++..++.
T Consensus 89 ~s~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (143)
T 2qv0_A 89 ITAWKEHAVEAF---ELEAFDYILKPYQESRIINMLQKLTT 126 (143)
T ss_dssp EESCCTTHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EeCCHHHHHHHH---hCCcceEEeCCCCHHHHHHHHHHHHH
Confidence 33332 222333 56778899999999999999988764
No 163
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=60.08 E-value=35 Score=29.59 Aligned_cols=89 Identities=17% Similarity=0.120 Sum_probs=54.9
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE 259 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~ 259 (385)
+..++.+|--.-. ...++++...++++++-+.+.. .+..+ .+...++.. ..++.++++ ..|+++..+.
T Consensus 5 ~~~vgiiG~G~~g---~~~~~~l~~~~~~~l~av~d~~-~~~~~-~a~~~g~~~-----~~~~~~ll~~~~~D~V~i~tp 74 (359)
T 3e18_A 5 KYQLVIVGYGGMG---SYHVTLASAADNLEVHGVFDIL-AEKRE-AAAQKGLKI-----YESYEAVLADEKVDAVLIATP 74 (359)
T ss_dssp CEEEEEECCSHHH---HHHHHHHHTSTTEEEEEEECSS-HHHHH-HHHTTTCCB-----CSCHHHHHHCTTCCEEEECSC
T ss_pred cCcEEEECcCHHH---HHHHHHHHhCCCcEEEEEEcCC-HHHHH-HHHhcCCce-----eCCHHHHhcCCCCCEEEEcCC
Confidence 3557777743221 2455677777888876554433 22232 334445421 256666777 6899888776
Q ss_pred CCCCcHHHHHHHhcCCcEEEe
Q 016648 260 SETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~PvI~s 280 (385)
...-...+.+|+..|++|++-
T Consensus 75 ~~~h~~~~~~al~aGkhVl~E 95 (359)
T 3e18_A 75 NDSHKELAISALEAGKHVVCE 95 (359)
T ss_dssp GGGHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHHCCCCEEee
Confidence 555555678999999999964
No 164
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=59.41 E-value=40 Score=28.81 Aligned_cols=91 Identities=14% Similarity=0.075 Sum_probs=56.1
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE 259 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~ 259 (385)
...++.+|.-.- -..+++++.+.++++++-+.+.. .+..++.....++. ....++.+++. ..|+++..+.
T Consensus 5 ~~~igiiG~G~~---g~~~~~~l~~~~~~~l~av~d~~-~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp 76 (330)
T 3e9m_A 5 KIRYGIMSTAQI---VPRFVAGLRESAQAEVRGIASRR-LENAQKMAKELAIP----VAYGSYEELCKDETIDIIYIPTY 76 (330)
T ss_dssp CEEEEECSCCTT---HHHHHHHHHHSSSEEEEEEBCSS-SHHHHHHHHHTTCC----CCBSSHHHHHHCTTCSEEEECCC
T ss_pred eEEEEEECchHH---HHHHHHHHHhCCCcEEEEEEeCC-HHHHHHHHHHcCCC----ceeCCHHHHhcCCCCCEEEEcCC
Confidence 345777774322 22466777777887777544332 23344444433331 11256677787 7899888776
Q ss_pred CCCCcHHHHHHHhcCCcEEEe
Q 016648 260 SETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~PvI~s 280 (385)
.......+.+|+..|++|++-
T Consensus 77 ~~~h~~~~~~al~~gk~vl~E 97 (330)
T 3e9m_A 77 NQGHYSAAKLALSQGKPVLLE 97 (330)
T ss_dssp GGGHHHHHHHHHHTTCCEEEC
T ss_pred CHHHHHHHHHHHHCCCeEEEe
Confidence 555555678899999999974
No 165
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=58.47 E-value=26 Score=27.56 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=60.6
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe-cCCC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RAGG 284 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s-~~~~ 284 (385)
+++++.+.+. ...+.......+ .+...-+.++....+...|++++-.. .+.-|..+++.+. ..+|+|.- ....
T Consensus 4 ~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~ 82 (220)
T 1p2f_A 4 KIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDEEAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSD 82 (220)
T ss_dssp EEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCCSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCS
T ss_pred eEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 4566665443 334445544444 33333333555444456788876543 2334556666554 46888754 3332
Q ss_pred C---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 285 I---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 285 ~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
. .+.+ ..|..+++..|.+.+++.+++..++.
T Consensus 83 ~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~ 116 (220)
T 1p2f_A 83 DESVLKGF---EAGADDYVTKPFNPEILLARVKRFLE 116 (220)
T ss_dssp HHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 2 2223 45778899999999999999987753
No 166
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=58.29 E-value=18 Score=29.23 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=29.6
Q ss_pred HHHHHHHHhCcEEEEcCCCC-----------CCcHHHHHHHhcCCcEEEecCC
Q 016648 242 EELSQAYASGDVFVMPSESE-----------TLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~~e-----------~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
++..+.+.+||.+++|- .+ ++-..+-|+...|+|++.+..|
T Consensus 71 ~d~~~~l~~ad~I~lpG-G~~~~~~~~l~~~gl~~~l~~~~~~G~p~~G~sAG 122 (229)
T 1fy2_A 71 ADPLAAIEKAEIIIVGG-GNTFQLLKESRERGLLAPMADRVKRGALYIGWSAG 122 (229)
T ss_dssp SCHHHHHHHCSEEEECC-SCHHHHHHHHHHTTCHHHHHHHHHTTCEEEEETHH
T ss_pred ccHHHHHhcCCEEEECC-CcHHHHHHHHHHCChHHHHHHHHHcCCEEEEECHH
Confidence 34556788899998886 22 3445677888899999987644
No 167
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=58.18 E-value=41 Score=22.90 Aligned_cols=104 Identities=15% Similarity=0.178 Sum_probs=57.4
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCC-CCCCcHHHHHHHh--cCCcEEEe-cCC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS--SGIPVVGV-RAG 283 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a--~G~PvI~s-~~~ 283 (385)
+++++.+.+. ...+.......+......-+..+....+. ..|+++.-.. .+.-|..+++.+. ..+|+|.. ...
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s~~~ 82 (121)
T 1zh2_A 3 NVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARS 82 (121)
T ss_dssp EEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCC
T ss_pred EEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEECCC
Confidence 4556665442 33444444444444333333344433333 3677775432 2234566666664 35677643 333
Q ss_pred CC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 284 GI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 284 ~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
.. .+.+ +.|..+++..|.+.+++.+.+..++
T Consensus 83 ~~~~~~~~~---~~g~~~~l~Kp~~~~~l~~~i~~~~ 116 (121)
T 1zh2_A 83 EESDKIAAL---DAGADDYLSKPFGIGELQARLRVAL 116 (121)
T ss_dssp SHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHH---hcCCCeEEeCCcCHHHHHHHHHHHH
Confidence 22 2223 4567789999999999999987764
No 168
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=57.87 E-value=60 Score=27.56 Aligned_cols=92 Identities=14% Similarity=0.041 Sum_probs=55.2
Q ss_pred HHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCc-EEEecCCCCCc--cccc-CCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 243 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIP-VVGVRAGGIPD--IIPE-DQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~P-vI~s~~~~~~e--~~~~-~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
.-..-+++||++|.-.. .|++-.++++... +.+ +|....+ +.. .... ....+.-+..++.+...+++.|.+.|
T Consensus 80 ~d~~~l~~ADlvv~~G~~lE~w~~~~~~~~~-~~~~~v~~s~~-i~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~~L 157 (313)
T 1toa_A 80 GDVEWLGNADLILYNGLHLETKMGEVFSKLR-GSRLVVAVSET-IPVSQRLSLEEAEFDPHVWFDVKLWSYSVKAVYESL 157 (313)
T ss_dssp HHHHHHHHCSEEEECCTTCSTTCHHHHHHHT-TSSEEEEGGGG-SCGGGSCBSTTSCBCCCGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEcCCCcHHHHHHHHHhcc-CCCeEEEeecC-cccccccccCCCCCCCceeCCHHHHHHHHHHHHHHH
Confidence 33456799999998654 6888889998876 445 5533221 111 1000 00112335556667777777777766
Q ss_pred c--CHHHHHHHHHHHHHHHHh
Q 016648 318 Y--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 318 ~--~~~~~~~~~~~a~~~~~~ 336 (385)
. ||+......+|+..+.++
T Consensus 158 ~~~DP~~a~~Y~~N~~~~~~~ 178 (313)
T 1toa_A 158 CKLLPGKTREFTQRYQAYQQQ 178 (313)
T ss_dssp HHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHChhhHHHHHHHHHHHHHH
Confidence 5 777777777777666543
No 169
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=57.54 E-value=11 Score=33.86 Aligned_cols=95 Identities=12% Similarity=0.027 Sum_probs=56.4
Q ss_pred CCCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeE---EecccChHHHHHHHH--hCcEE
Q 016648 180 PDKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAV---FTGMLLGEELSQAYA--SGDVF 254 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~---~~g~~~~~~~~~~~~--~adi~ 254 (385)
.++..++.+|--. -|...+++++.+.++++++-+.+.. .+..+....+.++. ...+ .++.+++. ..|++
T Consensus 81 ~~~irigiIG~G~--~g~~~~~~~l~~~~~~~lvav~d~~-~~~~~~~a~~~g~~~~~~~~~---~~~~~ll~~~~vD~V 154 (433)
T 1h6d_A 81 DRRFGYAIVGLGK--YALNQILPGFAGCQHSRIEALVSGN-AEKAKIVAAEYGVDPRKIYDY---SNFDKIAKDPKIDAV 154 (433)
T ss_dssp CCCEEEEEECCSH--HHHHTHHHHTTTCSSEEEEEEECSC-HHHHHHHHHHTTCCGGGEECS---SSGGGGGGCTTCCEE
T ss_pred CCceEEEEECCcH--HHHHHHHHHHhhCCCcEEEEEEcCC-HHHHHHHHHHhCCCccccccc---CCHHHHhcCCCCCEE
Confidence 3456788888521 1222456667666777776554432 33344444333321 1112 34445566 68999
Q ss_pred EEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 255 VMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 255 v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
+..+......-.+.+|+..|++|++-
T Consensus 155 ~iatp~~~h~~~~~~al~aGk~Vl~E 180 (433)
T 1h6d_A 155 YIILPNSLHAEFAIRAFKAGKHVMCE 180 (433)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred EEcCCchhHHHHHHHHHHCCCcEEEc
Confidence 88776555566778999999999974
No 170
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=57.25 E-value=49 Score=26.76 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=58.1
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc--CCcEEEec-C
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS--GIPVVGVR-A 282 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~--G~PvI~s~-~ 282 (385)
.+++|+.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+.. .+|||.-. .
T Consensus 38 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~lt~~ 117 (249)
T 3q9s_A 38 QRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDHPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVLTAR 117 (249)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSCCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEEESC
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEEECC
Confidence 45556554432 233333343333333333333454444443 477766433 22235555555543 47777543 3
Q ss_pred CCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 283 GGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 283 ~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.... +.+ ..|..+++..+.+.+++.++|..++.
T Consensus 118 ~~~~~~~~a~---~~Ga~~yl~Kp~~~~~L~~~i~~~l~ 153 (249)
T 3q9s_A 118 DTVEEKVRLL---GLGADDYLIKPFHPDELLARVKVQLR 153 (249)
T ss_dssp CSHHHHHHHH---HHTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred CCHHHHHHHH---HCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 2222 233 45778999999999999999988765
No 171
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=57.22 E-value=48 Score=28.63 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=56.0
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhC-CCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEc
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMP 257 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~-~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~p 257 (385)
+...++.+|--.-. ...++++.+. ++++++-+.+. ..+..++...+.++... .++.++++ ..|+++..
T Consensus 12 ~~~rvgiiG~G~~g---~~~~~~l~~~~~~~~lvav~d~-~~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~D~V~i~ 82 (354)
T 3q2i_A 12 RKIRFALVGCGRIA---NNHFGALEKHADRAELIDVCDI-DPAALKAAVERTGARGH-----ASLTDMLAQTDADIVILT 82 (354)
T ss_dssp SCEEEEEECCSTTH---HHHHHHHHHTTTTEEEEEEECS-SHHHHHHHHHHHCCEEE-----SCHHHHHHHCCCSEEEEC
T ss_pred CcceEEEEcCcHHH---HHHHHHHHhCCCCeEEEEEEcC-CHHHHHHHHHHcCCcee-----CCHHHHhcCCCCCEEEEC
Confidence 34668888753222 2345777777 77777644432 33444444444444322 44555666 68998887
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEe
Q 016648 258 SESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 258 s~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
+........+.+++..|++|++-
T Consensus 83 tp~~~h~~~~~~al~~gk~v~~E 105 (354)
T 3q2i_A 83 TPSGLHPTQSIECSEAGFHVMTE 105 (354)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEEC
T ss_pred CCcHHHHHHHHHHHHCCCCEEEe
Confidence 76554455678899999999964
No 172
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=57.12 E-value=42 Score=22.69 Aligned_cols=104 Identities=21% Similarity=0.230 Sum_probs=58.5
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh---cCCcEEE-ecC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVG-VRA 282 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~-s~~ 282 (385)
+++++.+.+. ...+.......++.+...-+.++....+.. .|+++.-... +.-|..+++.+. ...|+|. |..
T Consensus 3 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 82 (116)
T 3a10_A 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGNYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAY 82 (116)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESC
T ss_pred EEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECC
Confidence 4556665442 233444444334444333334566555554 4777764432 334566666654 3577764 332
Q ss_pred CCC-CcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 283 GGI-PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 283 ~~~-~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
... .+.. ..|..+++..|.+.+++.+++..++
T Consensus 83 ~~~~~~~~---~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 83 SHYRSDMS---SWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp GGGGGCGG---GGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred cchHHHHH---hccccceEECCCCHHHHHHHHHHHh
Confidence 221 2333 4567789999999999999887764
No 173
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=57.07 E-value=58 Score=27.62 Aligned_cols=93 Identities=12% Similarity=0.060 Sum_probs=55.2
Q ss_pred HHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEecCCCCCccccc----CCCCCeeEeeCCCCHHHHHHHHhHh
Q 016648 242 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE----DQDGKIGYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~----~~~~~~g~~~~~~~~~~l~~~i~~l 316 (385)
..-..-+++||++|.-.. .|+|-.++++... +.++|....+ +..+-.. ....+.-+..++.+...+++.|.+.
T Consensus 72 p~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~-~~~~v~~s~g-i~~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~~ 149 (307)
T 3ujp_A 72 PSDIVKAQDADLILYNGMNLERWFEQFLGNVK-DVPSVVLTEG-IEPIPIADGPYTDKPNPHAWMSPRNALVYVENIRQA 149 (307)
T ss_dssp HHHHHHHHHCSEEEECCTTSSTTHHHHHHTSC-SCCEEETTTT-CCCCBCCSSSSTTSBCCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEcCCChHHHHHHHHHhCC-CCCEEEeeCC-ccccccccccCCCCCCCCcCCCHHHHHHHHHHHHHH
Confidence 344566889999997653 6788788887663 4566644322 2111100 0011233556666777777777776
Q ss_pred hc--CHHHHHHHHHHHHHHHHh
Q 016648 317 LY--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 317 l~--~~~~~~~~~~~a~~~~~~ 336 (385)
|. ||+....+.+++.++.++
T Consensus 150 L~~~DP~~a~~Y~~Na~~~~~~ 171 (307)
T 3ujp_A 150 FVELDPDNAKYYNANAAVYSEQ 171 (307)
T ss_dssp HHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHH
Confidence 65 777667777777666543
No 174
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=56.30 E-value=25 Score=30.26 Aligned_cols=94 Identities=13% Similarity=0.015 Sum_probs=57.0
Q ss_pred CCCCcEEEEEeeccccccHHHHHHHHHhC-CCceEEEEeCCccHHHHHHHHcCCCe-EEecccChHHHHHHHH--hCcEE
Q 016648 179 EPDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYA--SGDVF 254 (385)
Q Consensus 179 ~~~~~~i~~~G~~~~~k~~~~l~~a~~~~-~~~~l~i~G~g~~~~~l~~~~~~~~i-~~~g~~~~~~~~~~~~--~adi~ 254 (385)
++++..++.+|--.. .-...+.++... ++++++-+.+. ..+..++..++.++ .. ..++.++++ ..|++
T Consensus 15 ~~~~irvgiIG~G~~--~g~~~~~~l~~~~~~~~lvav~d~-~~~~~~~~a~~~~~~~~-----~~~~~~ll~~~~vD~V 86 (340)
T 1zh8_A 15 PLRKIRLGIVGCGIA--ARELHLPALKNLSHLFEITAVTSR-TRSHAEEFAKMVGNPAV-----FDSYEELLESGLVDAV 86 (340)
T ss_dssp -CCCEEEEEECCSHH--HHHTHHHHHHTTTTTEEEEEEECS-SHHHHHHHHHHHSSCEE-----ESCHHHHHHSSCCSEE
T ss_pred CCCceeEEEEecCHH--HHHHHHHHHHhCCCceEEEEEEcC-CHHHHHHHHHHhCCCcc-----cCCHHHHhcCCCCCEE
Confidence 345677888885311 112356677777 77777655543 23444444443332 22 145666676 47888
Q ss_pred EEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 255 VMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 255 v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
+..+....-...+.+|+..|++|++-
T Consensus 87 ~i~tp~~~H~~~~~~al~aGkhVl~E 112 (340)
T 1zh8_A 87 DLTLPVELNLPFIEKALRKGVHVICE 112 (340)
T ss_dssp EECCCGGGHHHHHHHHHHTTCEEEEE
T ss_pred EEeCCchHHHHHHHHHHHCCCcEEEe
Confidence 88775544456678899999999974
No 175
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=56.10 E-value=28 Score=30.29 Aligned_cols=91 Identities=18% Similarity=0.062 Sum_probs=55.1
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCC-CeEEecccChHHHHHHHHhC--cEEEEcC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYASG--DVFVMPS 258 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~-~i~~~g~~~~~~~~~~~~~a--di~v~ps 258 (385)
+..++.+|--.. +...+++++.+.++++++-+.+. ..+..++..... .... ..++.++++.. |+++..+
T Consensus 5 ~~rigiIG~G~~--g~~~~~~~l~~~~~~~l~av~d~-~~~~~~~~a~~~~~~~~-----~~~~~~ll~~~~vD~V~i~t 76 (359)
T 3m2t_A 5 LIKVGLVGIGAQ--MQENLLPSLLQMQDIRIVAACDS-DLERARRVHRFISDIPV-----LDNVPAMLNQVPLDAVVMAG 76 (359)
T ss_dssp CEEEEEECCSHH--HHHTHHHHHHTCTTEEEEEEECS-SHHHHGGGGGTSCSCCE-----ESSHHHHHHHSCCSEEEECS
T ss_pred cceEEEECCCHH--HHHHHHHHHHhCCCcEEEEEEcC-CHHHHHHHHHhcCCCcc-----cCCHHHHhcCCCCCEEEEcC
Confidence 345777774321 22346677888888887744432 334445554443 2222 24566677765 8888776
Q ss_pred CCCCCcHHHHHHHhcCCcEEEe
Q 016648 259 ESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
....-.-.+.+|+..|++|++-
T Consensus 77 p~~~H~~~~~~al~aGkhVl~E 98 (359)
T 3m2t_A 77 PPQLHFEMGLLAMSKGVNVFVE 98 (359)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEC
T ss_pred CcHHHHHHHHHHHHCCCeEEEE
Confidence 5444445578999999999973
No 176
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=55.24 E-value=72 Score=25.82 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=45.0
Q ss_pred HHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHH
Q 016648 242 EELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLS 311 (385)
Q Consensus 242 ~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~ 311 (385)
++..+.+.. .|++++-.. .+.-|..+++.+. ..+|||.- ..... .+.+ ..|..+++..|-+.+++.+
T Consensus 163 ~eal~~l~~~~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI~lt~~~~~~~~~~~~---~~G~~~~l~KP~~~~~L~~ 239 (254)
T 2ayx_A 163 VDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCL---ESGMDSCLSKPVTLDVIKQ 239 (254)
T ss_dssp HHHHHHHHHSCCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEEEEESSTTSHHHHHHH---HCCCEEEEESSCCHHHHHH
T ss_pred HHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHH---HcCCceEEECCCCHHHHHH
Confidence 455554443 467665322 2233555555443 47888854 33222 2233 5677899999999999999
Q ss_pred HHhHhhc
Q 016648 312 KLEPLLY 318 (385)
Q Consensus 312 ~i~~ll~ 318 (385)
.+.+++.
T Consensus 240 ~l~~~~~ 246 (254)
T 2ayx_A 240 TLTLYAE 246 (254)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
No 177
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=55.00 E-value=61 Score=28.05 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=56.0
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCe----EEecccChHHHHHHHH--hCcEEE
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPA----VFTGMLLGEELSQAYA--SGDVFV 255 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i----~~~g~~~~~~~~~~~~--~adi~v 255 (385)
+..++.+|.-.-. ..+++++...++++++.+.+. ..+..+....+.++ ... .++.++++ ..|+++
T Consensus 6 ~~~vgiiG~G~ig---~~~~~~l~~~~~~~lv~v~d~-~~~~~~~~a~~~~~~~~~~~~-----~~~~~ll~~~~~D~V~ 76 (362)
T 1ydw_A 6 QIRIGVMGCADIA---RKVSRAIHLAPNATISGVASR-SLEKAKAFATANNYPESTKIH-----GSYESLLEDPEIDALY 76 (362)
T ss_dssp CEEEEEESCCTTH---HHHHHHHHHCTTEEEEEEECS-SHHHHHHHHHHTTCCTTCEEE-----SSHHHHHHCTTCCEEE
T ss_pred ceEEEEECchHHH---HHHHHHHhhCCCcEEEEEEcC-CHHHHHHHHHHhCCCCCCeee-----CCHHHHhcCCCCCEEE
Confidence 4567777752222 245677777788877655543 23334444443332 222 35566676 489998
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
..+......-.+.+|+..|++|++-+
T Consensus 77 i~tp~~~h~~~~~~al~aGk~V~~EK 102 (362)
T 1ydw_A 77 VPLPTSLHVEWAIKAAEKGKHILLEK 102 (362)
T ss_dssp ECCCGGGHHHHHHHHHTTTCEEEECS
T ss_pred EcCChHHHHHHHHHHHHCCCeEEEec
Confidence 87765555566778999999999843
No 178
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=54.67 E-value=7 Score=30.17 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=38.0
Q ss_pred HHHhCcEEEEcCCCCCCcH--HHHHHHhcCCcEEEecCCCC-CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 247 AYASGDVFVMPSESETLGL--VVLEAMSSGIPVVGVRAGGI-PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 247 ~~~~adi~v~ps~~e~~~~--~~~Ea~a~G~PvI~s~~~~~-~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
+...||.+|...- ++|+ .+.|++..++||++-+.-+. ..++.+ .+...-.+ .+|++++.+.+.+.+.
T Consensus 104 m~~~sda~IvlpG--g~GTL~E~~~al~~~kpV~~l~~~~~~~gfi~~-~~~~~i~~--~~~~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 104 NALSSNVLVAVGM--GPGTAAEVALALKAKKPVVLLGTQPEAEKFFTS-LDAGLVHV--AADVAGAIAAVKQLLA 173 (176)
T ss_dssp CGGGCSEEEEESC--CHHHHHHHHHHHHTTCCEEEESCCHHHHHHHHH-HCTTTEEE--ESSHHHHHHHHHHHHH
T ss_pred HHHhCCEEEEecC--CccHHHHHHHHHHhCCcEEEEcCcccccccCCh-hhcCeEEE--cCCHHHHHHHHHHHHH
Confidence 3456777664322 3333 47888899999998875211 112211 11112223 3489999988887654
No 179
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=54.18 E-value=37 Score=28.88 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=53.8
Q ss_pred EEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCe-EEecccChHHHHHHH-HhCcEEEEcCCCC
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAY-ASGDVFVMPSESE 261 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i-~~~g~~~~~~~~~~~-~~adi~v~ps~~e 261 (385)
.++.+|--.- | ..+++++.+.++++++.+.+. ..+..++.....++ ... .++.+++ ..+|+++..+...
T Consensus 3 ~vgiiG~G~~--g-~~~~~~l~~~~~~~~~~v~d~-~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~D~V~i~tp~~ 73 (325)
T 2ho3_A 3 KLGVIGTGAI--S-HHFIEAAHTSGEYQLVAIYSR-KLETAATFASRYQNIQLF-----DQLEVFFKSSFDLVYIASPNS 73 (325)
T ss_dssp EEEEECCSHH--H-HHHHHHHHHTTSEEEEEEECS-SHHHHHHHGGGSSSCEEE-----SCHHHHHTSSCSEEEECSCGG
T ss_pred EEEEEeCCHH--H-HHHHHHHHhCCCeEEEEEEeC-CHHHHHHHHHHcCCCeEe-----CCHHHHhCCCCCEEEEeCChH
Confidence 3556664211 1 245667777777777644432 33445555554442 222 3445556 6789999887655
Q ss_pred CCcHHHHHHHhcCCcEEEec
Q 016648 262 TLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 262 ~~~~~~~Ea~a~G~PvI~s~ 281 (385)
.....+.+|+..|++|++-+
T Consensus 74 ~h~~~~~~al~~gk~V~~EK 93 (325)
T 2ho3_A 74 LHFAQAKAALSAGKHVILEK 93 (325)
T ss_dssp GHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHcCCcEEEec
Confidence 55566788999999999753
No 180
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=53.90 E-value=95 Score=25.79 Aligned_cols=107 Identities=12% Similarity=0.123 Sum_probs=65.4
Q ss_pred CCceEEEEeCCcc-HHHHHHHHcCCCeEEec-ccChHHHHHHHHh--CcEEEEcCC----CCCCc-HHHHHHHhcCCcEE
Q 016648 208 PEARIAFIGDGPY-REELEKMFTGMPAVFTG-MLLGEELSQAYAS--GDVFVMPSE----SETLG-LVVLEAMSSGIPVV 278 (385)
Q Consensus 208 ~~~~l~i~G~g~~-~~~l~~~~~~~~i~~~g-~~~~~~~~~~~~~--adi~v~ps~----~e~~~-~~~~Ea~a~G~PvI 278 (385)
...++.++-+.+. ...+.......+..+.+ .-+.++..+.+.. .|++++--. .+|+- ...+-... .+|||
T Consensus 159 l~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~e~~~~ir~~~-~~piI 237 (286)
T 3n0r_A 159 LATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRTPGLVLADIQLADGSSGIDAVKDILGRM-DVPVI 237 (286)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCCCSEEEEESCCTTSCCTTTTTHHHHHHT-TCCEE
T ss_pred CCCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCCCCEEEEcCCCCCCCCHHHHHHHHHhcC-CCCEE
Confidence 3457777776553 34455555555666663 4444677777765 477776322 22321 12233333 89998
Q ss_pred EecC-C-CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 279 GVRA-G-GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 279 ~s~~-~-~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.-.. + ...+.+ ..|..+++.+|-+.++|...|..++.
T Consensus 238 ~lT~~~~~~~~~~---~~G~~~~l~KP~~~~~L~~~i~~~l~ 276 (286)
T 3n0r_A 238 FITAFPERLLTGE---RPEPTFLITKPFQPETVKAAIGQALF 276 (286)
T ss_dssp EEESCGGGGCCSS---SCCCSSEEESSCCHHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHH---hCCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 5432 2 122233 56778899999999999999999875
No 181
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=53.86 E-value=25 Score=30.11 Aligned_cols=89 Identities=9% Similarity=0.013 Sum_probs=52.5
Q ss_pred EEEEEeeccccccHHHHHHHHHhCCC--ceEEEEeCCccHHHHHHHHcCCCe-EEecccChHHHHHHHH--hCcEEEEcC
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRLPE--ARIAFIGDGPYREELEKMFTGMPA-VFTGMLLGEELSQAYA--SGDVFVMPS 258 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~~~--~~l~i~G~g~~~~~l~~~~~~~~i-~~~g~~~~~~~~~~~~--~adi~v~ps 258 (385)
.++.+|.-.- -...++++...++ ++++-+.+. ..+..++...+.++ .. ..++.++++ ..|+++..+
T Consensus 4 rigiiG~G~i---g~~~~~~l~~~~~~~~~l~av~d~-~~~~a~~~a~~~~~~~~-----~~~~~~ll~~~~vD~V~i~t 74 (334)
T 3ohs_X 4 RWGIVSVGLI---SSDFTAVLQTLPRSEHQVVAVAAR-DLSRAKEFAQKHDIPKA-----YGSYEELAKDPNVEVAYVGT 74 (334)
T ss_dssp EEEEECCSHH---HHHHHHHHTTSCTTTEEEEEEECS-SHHHHHHHHHHHTCSCE-----ESSHHHHHHCTTCCEEEECC
T ss_pred EEEEECchHH---HHHHHHHHHhCCCCCeEEEEEEcC-CHHHHHHHHHHcCCCcc-----cCCHHHHhcCCCCCEEEECC
Confidence 4666663221 1235677777764 455444432 33444444443332 11 245666677 589988877
Q ss_pred CCCCCcHHHHHHHhcCCcEEEec
Q 016648 259 ESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
....-.-.+.+|+..|++|++-+
T Consensus 75 p~~~H~~~~~~al~~GkhVl~EK 97 (334)
T 3ohs_X 75 QHPQHKAAVMLCLAAGKAVLCEK 97 (334)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEES
T ss_pred CcHHHHHHHHHHHhcCCEEEEEC
Confidence 65544556788999999999753
No 182
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=53.64 E-value=40 Score=29.32 Aligned_cols=90 Identities=19% Similarity=0.166 Sum_probs=54.4
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcC
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPS 258 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps 258 (385)
+...++.+|--.. |....+.++...++++++-+.+... +...+. ...+... .++.++++ ..|+++..+
T Consensus 6 ~~~rvgiiG~G~~--g~~~~~~~l~~~~~~~l~av~d~~~-~~~~~~--~~~~~~~-----~~~~~ll~~~~~D~V~i~t 75 (364)
T 3e82_A 6 NTINIALIGYGFV--GKTFHAPLIRSVPGLNLAFVASRDE-EKVKRD--LPDVTVI-----ASPEAAVQHPDVDLVVIAS 75 (364)
T ss_dssp -CEEEEEECCSHH--HHHTHHHHHHTSTTEEEEEEECSCH-HHHHHH--CTTSEEE-----SCHHHHHTCTTCSEEEECS
T ss_pred CcceEEEECCCHH--HHHHHHHHHhhCCCeEEEEEEcCCH-HHHHhh--CCCCcEE-----CCHHHHhcCCCCCEEEEeC
Confidence 3456778775221 2223567777888888775554332 333321 1223322 45666677 688988876
Q ss_pred CCCCCcHHHHHHHhcCCcEEEe
Q 016648 259 ESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
....-.-.+.+|+..|++|++-
T Consensus 76 p~~~H~~~~~~al~aGk~Vl~E 97 (364)
T 3e82_A 76 PNATHAPLARLALNAGKHVVVD 97 (364)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEC
T ss_pred ChHHHHHHHHHHHHCCCcEEEe
Confidence 6544455678999999999974
No 183
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=53.58 E-value=38 Score=29.14 Aligned_cols=88 Identities=18% Similarity=0.101 Sum_probs=53.9
Q ss_pred EEEEEeeccccccHHHHHHHHH-hCCCceEEEEeCCccHHHHHHHHcCCC--eEEecccChHHHHHHHHh--CcEEEEcC
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMD-RLPEARIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYAS--GDVFVMPS 258 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~-~~~~~~l~i~G~g~~~~~l~~~~~~~~--i~~~g~~~~~~~~~~~~~--adi~v~ps 258 (385)
.++.+|--.- | ...++++. ..++++++-+.+. ..+..++...+.+ .... +++.+++.. .|+++..+
T Consensus 4 rigiIG~G~~--g-~~~~~~l~~~~~~~~l~av~d~-~~~~~~~~~~~~g~~~~~~-----~~~~~ll~~~~~D~V~i~t 74 (344)
T 3mz0_A 4 RIGVIGTGAI--G-KEHINRITNKLSGAEIVAVTDV-NQEAAQKVVEQYQLNATVY-----PNDDSLLADENVDAVLVTS 74 (344)
T ss_dssp EEEEECCSHH--H-HHHHHHHHHTCSSEEEEEEECS-SHHHHHHHHHHTTCCCEEE-----SSHHHHHHCTTCCEEEECS
T ss_pred EEEEECccHH--H-HHHHHHHHhhCCCcEEEEEEcC-CHHHHHHHHHHhCCCCeee-----CCHHHHhcCCCCCEEEECC
Confidence 4666664221 1 24556666 6678777755433 3344555554444 2222 455666776 89988877
Q ss_pred CCCCCcHHHHHHHhcCCcEEEe
Q 016648 259 ESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
........+.+++..|++|++-
T Consensus 75 p~~~h~~~~~~al~~Gk~vl~E 96 (344)
T 3mz0_A 75 WGPAHESSVLKAIKAQKYVFCE 96 (344)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEC
T ss_pred CchhHHHHHHHHHHCCCcEEEc
Confidence 6555556678899999999973
No 184
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=53.01 E-value=52 Score=28.33 Aligned_cols=89 Identities=13% Similarity=0.056 Sum_probs=52.3
Q ss_pred EEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCCC
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESE 261 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~e 261 (385)
.++.+|--.. |....+.++...++++++-+.+....+.+.+.....++.... ++.++++. .|+++..+...
T Consensus 4 rvgiiG~G~~--g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~-----~~~~ll~~~~~D~V~i~tp~~ 76 (349)
T 3i23_A 4 KMGFIGFGKS--ANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTA-----DLNELLTDPEIELITICTPAH 76 (349)
T ss_dssp EEEEECCSHH--HHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEES-----CTHHHHSCTTCCEEEECSCGG
T ss_pred EEEEEccCHH--HHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEEC-----CHHHHhcCCCCCEEEEeCCcH
Confidence 4566664211 122355667677888887665543333333332223444433 33445655 79888877654
Q ss_pred CCcHHHHHHHhcCCcEEE
Q 016648 262 TLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 262 ~~~~~~~Ea~a~G~PvI~ 279 (385)
.-.-.+.+|+..|++|++
T Consensus 77 ~h~~~~~~al~aGk~Vl~ 94 (349)
T 3i23_A 77 THYDLAKQAILAGKSVIV 94 (349)
T ss_dssp GHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 445567899999999997
No 185
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=52.55 E-value=55 Score=22.63 Aligned_cols=106 Identities=15% Similarity=0.136 Sum_probs=61.1
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCe-EEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHhc-----CCcEEE
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPA-VFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS-----GIPVVG 279 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i-~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a~-----G~PvI~ 279 (385)
.+++++.+.+. ...+.......+. .+...-+.++....+.. .|++++-... +.-|..+++.+.. .+|+|.
T Consensus 7 ~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ 86 (129)
T 1p6q_A 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVISDFNMPKMDGLGLLQAVRANPATKKAAFII 86 (129)
T ss_dssp CCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSCCSEEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCCCCEEEEeCCCCCCCHHHHHHHHhcCccccCCCEEE
Confidence 45666665543 3344444444333 23333333566666654 5777764432 3346677777753 567775
Q ss_pred ec-CCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 280 VR-AGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 280 s~-~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.. .+.. .+.+ +.|..+++..|.+.+++.+++..++.
T Consensus 87 ~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 87 LTAQGDRALVQKAA---ALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp CCSCCCHHHHHHHH---HHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHH---HcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 43 2221 1223 45677899999999999999987653
No 186
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=52.01 E-value=91 Score=27.86 Aligned_cols=109 Identities=21% Similarity=0.164 Sum_probs=62.1
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHhc-----CCcEEE-e
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMSS-----GIPVVG-V 280 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a~-----G~PvI~-s 280 (385)
+++|+.+.+. ...+.......+..+...-+.++....+.. .|++++-... +.-|..+++.+.. .+|||. |
T Consensus 3 ~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii~lt 82 (459)
T 1w25_A 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVVLIT 82 (459)
T ss_dssp EEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCCCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEEEEE
Confidence 4556665443 333444443333333333334565555543 5887765432 3346667777653 578874 3
Q ss_pred cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 281 RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 ~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
............+.|..+++..|-+.+++..+|..++..
T Consensus 83 ~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~ 121 (459)
T 1w25_A 83 ALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRF 121 (459)
T ss_dssp CSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH
Confidence 333322111111457789999999999999999988753
No 187
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=51.76 E-value=9.3 Score=27.30 Aligned_cols=65 Identities=12% Similarity=0.149 Sum_probs=38.5
Q ss_pred CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEe-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 251 GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 251 adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.|++++-.. .+.-|..+++.+. ..+|+|.. ..... .+.+ ..|..+++..|-+.+++..++..++.
T Consensus 60 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~ 132 (135)
T 3snk_A 60 PGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLV---RMNASDWLHKPLDGKELLNAVTFHDT 132 (135)
T ss_dssp CSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHH---HTTCSEEEESSCCHHHHHHHHHHTC-
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHH---HcCcHhhccCCCCHHHHHHHHHHHhc
Confidence 466655322 1222333444333 26788754 33322 2233 55778899999999999999998865
No 188
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=51.74 E-value=33 Score=29.66 Aligned_cols=91 Identities=7% Similarity=0.029 Sum_probs=56.5
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHH--HhCcEEEEcCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAY--ASGDVFVMPSE 259 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~--~~adi~v~ps~ 259 (385)
+..++.+|--.- | ...++++.+.++++++-+.+. ..+..++.....++.. ..++.+++ ...|+++..+.
T Consensus 5 ~~~vgiiG~G~~--g-~~~~~~l~~~~~~~lvav~d~-~~~~~~~~~~~~g~~~-----~~~~~~~l~~~~~D~V~i~tp 75 (354)
T 3db2_A 5 PVGVAAIGLGRW--A-YVMADAYTKSEKLKLVTCYSR-TEDKREKFGKRYNCAG-----DATMEALLAREDVEMVIITVP 75 (354)
T ss_dssp CEEEEEECCSHH--H-HHHHHHHTTCSSEEEEEEECS-SHHHHHHHHHHHTCCC-----CSSHHHHHHCSSCCEEEECSC
T ss_pred cceEEEEccCHH--H-HHHHHHHHhCCCcEEEEEECC-CHHHHHHHHHHcCCCC-----cCCHHHHhcCCCCCEEEEeCC
Confidence 345777774221 1 346777887788777654433 2334444443333321 25666777 45888888776
Q ss_pred CCCCcHHHHHHHhcCCcEEEec
Q 016648 260 SETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
.......+.+|+..|++|++-+
T Consensus 76 ~~~h~~~~~~al~~gk~vl~EK 97 (354)
T 3db2_A 76 NDKHAEVIEQCARSGKHIYVEK 97 (354)
T ss_dssp TTSHHHHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHHHcCCEEEEcc
Confidence 6555666789999999999753
No 189
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=51.61 E-value=49 Score=22.56 Aligned_cols=104 Identities=25% Similarity=0.328 Sum_probs=55.7
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCCCC-CcHHHHHHH---hcCCcEEEe-cC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSESET-LGLVVLEAM---SSGIPVVGV-RA 282 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~e~-~~~~~~Ea~---a~G~PvI~s-~~ 282 (385)
+++++.+.+. ...+.......+......-+.++....+.. .|++++-....+ -|..+++.+ ..++|+|.. ..
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1dc7_A 5 IVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAH 84 (124)
T ss_dssp CCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCCCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCBCCS
T ss_pred EEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEEecC
Confidence 4556665443 344455544433322222233555555543 477765433221 122233333 346777643 22
Q ss_pred CC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhh
Q 016648 283 GG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 283 ~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
.. ..+.+ ..|..+++..|-+.+++...+..++
T Consensus 85 ~~~~~~~~~~---~~g~~~~l~kp~~~~~l~~~i~~~~ 119 (124)
T 1dc7_A 85 SDLDAAVSAY---QQGAFDYLPKPFDIDEAVALVERAI 119 (124)
T ss_dssp TTSTTTTSSC---TTCCCCCBCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---hcCcceEeeCCCCHHHHHHHHHHHH
Confidence 22 23334 5677889999999999999998765
No 190
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=51.47 E-value=8.9 Score=27.04 Aligned_cols=17 Identities=24% Similarity=0.247 Sum_probs=13.1
Q ss_pred CcHHHHHHHhcCCcEEE
Q 016648 263 LGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 263 ~~~~~~Ea~a~G~PvI~ 279 (385)
.+.++-.|..+|+|||.
T Consensus 60 ~gsKl~kA~~lgI~Ivs 76 (113)
T 2cok_A 60 MNKKMEEVKEANIRVVS 76 (113)
T ss_dssp CCHHHHHHHHTTCCEEC
T ss_pred CChHHHHHHHCCCcEEe
Confidence 46778888888888884
No 191
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=50.26 E-value=25 Score=29.93 Aligned_cols=90 Identities=16% Similarity=0.002 Sum_probs=50.7
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEE-EeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCC
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 261 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e 261 (385)
..++.+|--. -|...+++++.+.++++++- +...+. ..+......++.. +-+.+++ -..+|+++..+...
T Consensus 6 ~~vgiiG~G~--~g~~~~~~~l~~~~~~~lvav~d~~~~--~~~~~~~~~g~~~--~~~~~~l---~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLGG--IAQKAWLPVLAAASDWTLQGAWSPTRA--KALPICESWRIPY--ADSLSSL---AASCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCST--HHHHTHHHHHHSCSSEEEEEEECSSCT--THHHHHHHHTCCB--CSSHHHH---HTTCSEEEECSCTT
T ss_pred ceEEEECCCH--HHHHHHHHHHHhCCCeEEEEEECCCHH--HHHHHHHHcCCCc--cCcHHHh---hcCCCEEEEeCCch
Confidence 4577777521 11222566677777887773 333322 2222222223321 1122333 46799999877655
Q ss_pred CCcHHHHHHHhcCCcEEEec
Q 016648 262 TLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 262 ~~~~~~~Ea~a~G~PvI~s~ 281 (385)
.....+.+++..|++|++-.
T Consensus 77 ~h~~~~~~al~~G~~v~~eK 96 (319)
T 1tlt_A 77 SHFDVVSTLLNAGVHVCVDK 96 (319)
T ss_dssp HHHHHHHHHHHTTCEEEEES
T ss_pred hHHHHHHHHHHcCCeEEEeC
Confidence 55566778999999999753
No 192
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=50.26 E-value=65 Score=22.86 Aligned_cols=105 Identities=14% Similarity=0.135 Sum_probs=57.2
Q ss_pred eEEEEeCCccH-HHHHHHHc--CCCeEEe-cccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh---cCCcEEEe
Q 016648 211 RIAFIGDGPYR-EELEKMFT--GMPAVFT-GMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV 280 (385)
Q Consensus 211 ~l~i~G~g~~~-~~l~~~~~--~~~i~~~-g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~s 280 (385)
+++++.+.+.. ..+..... ..++... ..-+.++....+.. .|++++-... +.-|..+++.+. .++|+|..
T Consensus 4 ~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~l 83 (141)
T 3cu5_A 4 RILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHPPNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFM 83 (141)
T ss_dssp EEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSCCSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEE
T ss_pred eEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 56666655432 33444432 1233233 22233555555543 5887765432 334566666654 46787754
Q ss_pred -cCCC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 281 -RAGG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 281 -~~~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.... ..+.+ ..|..+++..|-+.+++.+++..++.
T Consensus 84 s~~~~~~~~~~~~---~~ga~~~l~KP~~~~~L~~~i~~~~~ 122 (141)
T 3cu5_A 84 SGYSDKEYLKAAI---KFRAIRYVEKPIDPSEIMDALKQSIQ 122 (141)
T ss_dssp CCSTTTCCC---------CCCEEECSSCCHHHHHHHHHHHHH
T ss_pred eCCCcHHHHHHHH---hCCccEEEeCCCCHHHHHHHHHHHHH
Confidence 3222 23334 56778999999999999999988753
No 193
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=50.10 E-value=46 Score=28.45 Aligned_cols=85 Identities=8% Similarity=-0.110 Sum_probs=53.6
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHh---CcEEEEc
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMP 257 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~---adi~v~p 257 (385)
.+..++.+|--. -+....++++...++++++-+.+.... ..++... .++.++++. .|+++..
T Consensus 24 ~~~rvgiiG~G~--ig~~~~~~~l~~~~~~~lvav~d~~~~--------~~g~~~~-----~~~~~ll~~~~~vD~V~i~ 88 (330)
T 4ew6_A 24 SPINLAIVGVGK--IVRDQHLPSIAKNANFKLVATASRHGT--------VEGVNSY-----TTIEAMLDAEPSIDAVSLC 88 (330)
T ss_dssp CCEEEEEECCSH--HHHHTHHHHHHHCTTEEEEEEECSSCC--------CTTSEEE-----SSHHHHHHHCTTCCEEEEC
T ss_pred CCceEEEEecCH--HHHHHHHHHHHhCCCeEEEEEEeCChh--------hcCCCcc-----CCHHHHHhCCCCCCEEEEe
Confidence 346788888522 122356778888888887766543311 2244432 344555655 8998887
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEe
Q 016648 258 SESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 258 s~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
+....-.-.+.+|+..|++|++-
T Consensus 89 tp~~~H~~~~~~al~aGkhVl~E 111 (330)
T 4ew6_A 89 MPPQYRYEAAYKALVAGKHVFLE 111 (330)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCcHHHHHHHHHHHHcCCcEEEe
Confidence 75444455678899999999964
No 194
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=49.96 E-value=63 Score=22.59 Aligned_cols=106 Identities=12% Similarity=0.151 Sum_probs=60.0
Q ss_pred eEEEEeCCcc-HHHHHHHHcCC-CeEEec-ccChHHHHHHHH--hCcEEEEcCCC-CCCcHHHHHHHh---cCCcEEEe-
Q 016648 211 RIAFIGDGPY-REELEKMFTGM-PAVFTG-MLLGEELSQAYA--SGDVFVMPSES-ETLGLVVLEAMS---SGIPVVGV- 280 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~-~i~~~g-~~~~~~~~~~~~--~adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~s- 280 (385)
+++++.+.+. ...+....... ++.... .-+.++....+. ..|++++-... +.-|..+++.+. ..+|+|.-
T Consensus 5 ~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls 84 (133)
T 3b2n_A 5 SLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVT 84 (133)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcCCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEe
Confidence 4566665443 23334433322 222222 223355555554 36888865443 334566666664 35787743
Q ss_pred cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 281 RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 281 ~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
..... .+.+ ..|..+++..|.+.+++.+.+.+++..
T Consensus 85 ~~~~~~~~~~~~---~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 123 (133)
T 3b2n_A 85 TFKRPGYFEKAV---VNDVDAYVLKERSIEELVETINKVNNG 123 (133)
T ss_dssp SCCCHHHHHHHH---HTTCSEEEETTSCHHHHHHHHHHHHC-
T ss_pred cCCCHHHHHHHH---HcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence 33322 2333 567789999999999999999888754
No 195
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=49.90 E-value=31 Score=29.97 Aligned_cols=92 Identities=11% Similarity=0.016 Sum_probs=54.9
Q ss_pred CCcEEEEEeeccccccHHHHHHHHH-hCCCceEEEEeCCccHHHHHHHHcCCC--eEEecccChHHHHHHHH--hCcEEE
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMD-RLPEARIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYA--SGDVFV 255 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~-~~~~~~l~i~G~g~~~~~l~~~~~~~~--i~~~g~~~~~~~~~~~~--~adi~v 255 (385)
.+..++.+|--.-. ...++++. ..++++++-+.+.. .+..++...+.+ +... .++.+++. ..|+++
T Consensus 22 ~~~rvgiIG~G~~g---~~~~~~l~~~~~~~~lvav~d~~-~~~~~~~a~~~g~~~~~~-----~~~~~ll~~~~~D~V~ 92 (357)
T 3ec7_A 22 MTLKAGIVGIGMIG---SDHLRRLANTVSGVEVVAVCDIV-AGRAQAALDKYAIEAKDY-----NDYHDLINDKDVEVVI 92 (357)
T ss_dssp CCEEEEEECCSHHH---HHHHHHHHHTCTTEEEEEEECSS-TTHHHHHHHHHTCCCEEE-----SSHHHHHHCTTCCEEE
T ss_pred CeeeEEEECCcHHH---HHHHHHHHhhCCCcEEEEEEeCC-HHHHHHHHHHhCCCCeee-----CCHHHHhcCCCCCEEE
Confidence 34568888753222 24556666 66788877544332 223333333323 2222 45566676 489988
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
..+....-...+.+|+..|++|++-+
T Consensus 93 i~tp~~~h~~~~~~al~aGk~Vl~EK 118 (357)
T 3ec7_A 93 ITASNEAHADVAVAALNANKYVFCEK 118 (357)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEES
T ss_pred EcCCcHHHHHHHHHHHHCCCCEEeec
Confidence 87765555566789999999999743
No 196
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=48.93 E-value=25 Score=26.67 Aligned_cols=35 Identities=23% Similarity=0.185 Sum_probs=24.9
Q ss_pred HHHHHhCcEEEEcCCCCCCcHHHHH---HHhcCCcEEEe
Q 016648 245 SQAYASGDVFVMPSESETLGLVVLE---AMSSGIPVVGV 280 (385)
Q Consensus 245 ~~~~~~adi~v~ps~~e~~~~~~~E---a~a~G~PvI~s 280 (385)
.+.+..||++|.--. +.-..+.+| |.+.|+||++-
T Consensus 72 ~~~i~~aD~vva~~~-~~d~Gt~~EiGyA~algKPVi~l 109 (165)
T 2khz_A 72 LNWLQQADVVVAEVT-QPSLGVGYELGRAVALGKPILCL 109 (165)
T ss_dssp HHHHHHCSEEEEECS-SCCHHHHHHHHHHHHTCSSEEEE
T ss_pred HHHHHhCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEE
Confidence 367999999886432 444455555 67889999975
No 197
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=48.48 E-value=73 Score=22.89 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=48.1
Q ss_pred HHHHHHHH--hCcEEEEcCC-CCCCcHHHHHHHhc---CCcEEEe-cCCCC---CcccccCCCCCeeEeeCCCCHHHHHH
Q 016648 242 EELSQAYA--SGDVFVMPSE-SETLGLVVLEAMSS---GIPVVGV-RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLS 311 (385)
Q Consensus 242 ~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI~s-~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~ 311 (385)
++..+.+. ..|++++-.. .+.-|..+++.+.. .+|+|.. ..... .+.+ ..|..+++..+.+.+++.+
T Consensus 51 ~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~---~~g~~~~l~Kp~~~~~l~~ 127 (152)
T 3eul_A 51 AAALELIKAHLPDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPAIVYQAL---QQGAAGFLLKDSTRTEIVK 127 (152)
T ss_dssp HHHHHHHHHHCCSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHHHHHHHH---HTTCSEEEETTCCHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHHHHHHHH---HcCCCEEEecCCCHHHHHH
Confidence 44444443 3577776543 33445666666543 5677653 33322 2334 5678899999999999999
Q ss_pred HHhHhhcCH
Q 016648 312 KLEPLLYNQ 320 (385)
Q Consensus 312 ~i~~ll~~~ 320 (385)
++..++...
T Consensus 128 ~i~~~~~~~ 136 (152)
T 3eul_A 128 AVLDCAKGR 136 (152)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHcCC
Confidence 999988653
No 198
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=48.40 E-value=85 Score=23.61 Aligned_cols=37 Identities=16% Similarity=0.018 Sum_probs=25.9
Q ss_pred HHHHHhCcEEEEcCC----CCCCcHHHHH---HHhcCCcEEEec
Q 016648 245 SQAYASGDVFVMPSE----SETLGLVVLE---AMSSGIPVVGVR 281 (385)
Q Consensus 245 ~~~~~~adi~v~ps~----~e~~~~~~~E---a~a~G~PvI~s~ 281 (385)
...+.+||++|.-.. .+.-+.+..| |.+.|+|||+-.
T Consensus 62 ~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~ 105 (161)
T 2f62_A 62 IQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFT 105 (161)
T ss_dssp HHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEE
Confidence 578999999886522 2333456555 678999999854
No 199
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.83 E-value=60 Score=22.71 Aligned_cols=12 Identities=25% Similarity=0.338 Sum_probs=7.8
Q ss_pred CCcEEEEEeecc
Q 016648 181 DKPLIVHVGRLG 192 (385)
Q Consensus 181 ~~~~i~~~G~~~ 192 (385)
....|++.|.+.
T Consensus 24 ~G~~~v~TG~l~ 35 (112)
T 2ebu_A 24 EGLIFVITGVLE 35 (112)
T ss_dssp TTCEEEECSCCS
T ss_pred CCCEEEEeeeCC
Confidence 345677777774
No 200
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=47.21 E-value=36 Score=29.88 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=53.4
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES 260 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~ 260 (385)
..++.+|--. ..-...+.++...++++++-+.+.. .+..++...+.++... .++.++++. .|+++..+..
T Consensus 3 ~rigiiG~G~--~~~~~~~~~l~~~~~~~l~av~d~~-~~~~~~~a~~~g~~~~-----~~~~ell~~~~vD~V~i~tp~ 74 (387)
T 3moi_A 3 IRFGICGLGF--AGSVLMAPAMRHHPDAQIVAACDPN-EDVRERFGKEYGIPVF-----ATLAEMMQHVQMDAVYIASPH 74 (387)
T ss_dssp EEEEEECCSH--HHHTTHHHHHHHCTTEEEEEEECSC-HHHHHHHHHHHTCCEE-----SSHHHHHHHSCCSEEEECSCG
T ss_pred eEEEEEeCCH--HHHHHHHHHHHhCCCeEEEEEEeCC-HHHHHHHHHHcCCCeE-----CCHHHHHcCCCCCEEEEcCCc
Confidence 3466666431 1112345667777887777555432 2333344333344322 455666665 8999887765
Q ss_pred CCCcHHHHHHHhcCCcEEEe
Q 016648 261 ETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s 280 (385)
....-.+.+|+..|++|++-
T Consensus 75 ~~H~~~~~~al~aGk~Vl~E 94 (387)
T 3moi_A 75 QFHCEHVVQASEQGLHIIVE 94 (387)
T ss_dssp GGHHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHCCCceeee
Confidence 44455678999999999964
No 201
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=47.15 E-value=1.1e+02 Score=25.84 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=53.5
Q ss_pred HHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhc-CCcEEEecCCCCCcc--cccCC------------CCCeeEeeCCCC
Q 016648 242 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSS-GIPVVGVRAGGIPDI--IPEDQ------------DGKIGYLFNPGD 305 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~-G~PvI~s~~~~~~e~--~~~~~------------~~~~g~~~~~~~ 305 (385)
..-..-+++||++|.-.. .|+|-.++++++.. ++++|....+ +.-+ -.... ..+.-+..++.+
T Consensus 62 p~d~~~l~~ADlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~s~~-i~~~~~~~~~~~~~~~~~~~~~~~~DPHvWldp~n 140 (312)
T 2o1e_A 62 PKDIANIQDADLFVYNSEYMETWVPSAEKSMGQGHAVFVNASKG-IDLMEGSEEEHEEHDHGEHEHSHAMDPHVWLSPVL 140 (312)
T ss_dssp HHHHHHHHHSSEEEESCTTTSTTHHHHHHTTCSSSCEEEETTTT-CCCCCC----------------CCCCCGGGGSHHH
T ss_pred HHHHHHHhcCCEEEEcCCChHhHHHHHHHhcccCCCeEEEecCC-cccccCcccccccccccccccCCCCCCCcccCHHH
Confidence 334556889999998654 67888888887653 3555543222 1110 00000 012224555556
Q ss_pred HHHHHHHHhHhhc--CHHHHHHHHHHHHHHHHh
Q 016648 306 LDDCLSKLEPLLY--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 306 ~~~l~~~i~~ll~--~~~~~~~~~~~a~~~~~~ 336 (385)
...+++.|.+.|. ||+....+.+++..+.++
T Consensus 141 ~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~ 173 (312)
T 2o1e_A 141 AQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAK 173 (312)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 6677777777665 777666677777665443
No 202
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=47.01 E-value=35 Score=29.57 Aligned_cols=89 Identities=19% Similarity=0.119 Sum_probs=53.7
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE 259 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~ 259 (385)
+..++.+|--.. |......++...++++++-+.+... +...+.. ..+... .++.++++ ..|+++..+.
T Consensus 5 ~~rvgiiG~G~~--g~~~~~~~l~~~~~~~l~av~d~~~-~~~~~~~--~~~~~~-----~~~~~ll~~~~vD~V~i~tp 74 (358)
T 3gdo_A 5 TIKVGILGYGLS--GSVFHGPLLDVLDEYQISKIMTSRT-EEVKRDF--PDAEVV-----HELEEITNDPAIELVIVTTP 74 (358)
T ss_dssp CEEEEEECCSHH--HHHTTHHHHTTCTTEEEEEEECSCH-HHHHHHC--TTSEEE-----SSTHHHHTCTTCCEEEECSC
T ss_pred cceEEEEccCHH--HHHHHHHHHhhCCCeEEEEEEcCCH-HHHHhhC--CCCceE-----CCHHHHhcCCCCCEEEEcCC
Confidence 356777774221 1122456677778888775554332 2232221 133333 34455676 6799888776
Q ss_pred CCCCcHHHHHHHhcCCcEEEe
Q 016648 260 SETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~PvI~s 280 (385)
...-.-.+.+|+..|++|++-
T Consensus 75 ~~~H~~~~~~al~aGkhVl~E 95 (358)
T 3gdo_A 75 SGLHYEHTMACIQAGKHVVME 95 (358)
T ss_dssp TTTHHHHHHHHHHTTCEEEEE
T ss_pred cHHHHHHHHHHHHcCCeEEEe
Confidence 555566778999999999974
No 203
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=46.89 E-value=47 Score=27.74 Aligned_cols=94 Identities=7% Similarity=0.047 Sum_probs=52.1
Q ss_pred HHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEecCCCCCccccc------------------CCC--CCeeEee
Q 016648 243 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPE------------------DQD--GKIGYLF 301 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~------------------~~~--~~~g~~~ 301 (385)
.-..-+++||++|.-.. .|++-.++++++.....++.....++.-+-.. ..+ .+.-+..
T Consensus 41 ~d~~~l~~Adlvv~~G~~~E~w~~~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~dPH~Wl 120 (284)
T 2prs_A 41 SDVKRLQNADLVVWVGPEMEAFMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWL 120 (284)
T ss_dssp THHHHHHHCSEEEECCTTTCGGGHHHHHTSCGGGEEEGGGCTTTGGGCCC---------------------CCCCCCGGG
T ss_pred HHHHHHHcCCEEEEcCCCcHHHHHHHHHhcCCCCcEEEecCCCcccccccccccccccccccccccccCCCCCCCCcccC
Confidence 33456889999997654 67888888877654333333222222111000 000 1222455
Q ss_pred CCCCHHHHHHHHhHhhc--CHHHHHHHHHHHHHHHHh
Q 016648 302 NPGDLDDCLSKLEPLLY--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 302 ~~~~~~~l~~~i~~ll~--~~~~~~~~~~~a~~~~~~ 336 (385)
++.+...+++.|.+.|. ||+....+.+++..+.++
T Consensus 121 dp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 157 (284)
T 2prs_A 121 SPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQ 157 (284)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 55567777777777665 777666677777666443
No 204
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=46.84 E-value=69 Score=22.17 Aligned_cols=107 Identities=15% Similarity=0.217 Sum_probs=62.5
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCC-CeEEecc-cChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh----cCCcEEE
Q 016648 210 ARIAFIGDGPY-REELEKMFTGM-PAVFTGM-LLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS----SGIPVVG 279 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~-~i~~~g~-~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a----~G~PvI~ 279 (385)
.+++++.+.+. ...+....... +....+. -+.++....+.. .|++++-... +.-|..+++.+. ...|+|.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ii~ 82 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKRPDILLLDIIMPHLDGLAVLERIRAGFEHQPNVIM 82 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCCCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcEEE
Confidence 35666665543 34455555544 4544432 233565555543 5888765432 334566666654 2456653
Q ss_pred -ecCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 280 -VRAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 280 -s~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
|..... .+.+ ..|..+++..|.+.+++.+++.+++..
T Consensus 83 ls~~~~~~~~~~~~---~~ga~~~l~KP~~~~~l~~~i~~~~~~ 123 (130)
T 1dz3_A 83 LTAFGQEDVTKKAV---ELGASYFILKPFDMENLAHHIRQVYGK 123 (130)
T ss_dssp EEETTCHHHHHHHH---HTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred EecCCCHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHhcC
Confidence 333322 2233 567889999999999999999887653
No 205
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=46.73 E-value=50 Score=27.76 Aligned_cols=93 Identities=14% Similarity=0.064 Sum_probs=54.8
Q ss_pred HHHHHHHHhCcEEEEcCC-CCC----CcHHHHHHHhcC--CcEEEecCCCCCcc-cc---cCCCCCeeEeeCCCCHHHHH
Q 016648 242 EELSQAYASGDVFVMPSE-SET----LGLVVLEAMSSG--IPVVGVRAGGIPDI-IP---EDQDGKIGYLFNPGDLDDCL 310 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~-~e~----~~~~~~Ea~a~G--~PvI~s~~~~~~e~-~~---~~~~~~~g~~~~~~~~~~l~ 310 (385)
..-..-+++||++|.-.. .|. |-.++++.+.-. .++|....+ +..+ .. .....+.-+..++.+...++
T Consensus 58 p~d~~~l~~Adlvv~~G~~lE~~~~~w~~k~~~~~~~~~~~~~v~~s~g-i~~~~~~~~~~~~~~dPHvWldp~~~~~~a 136 (294)
T 3hh8_A 58 PEDAEKTSNADVIFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSDG-IDVIYLEGASEKGKEDPHAWLNLENGIIYS 136 (294)
T ss_dssp HHHHHHHHHCSEEEECCTTSSCSTTSHHHHHHHHTTCCBTTTEEETTTT-SCCCBSTTCCSTTCBCCCGGGSHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEcCCCccchHHHHHHHHHHhccccCCceEEEccCC-cccccCCCccCCCCCCCceeCCHHHHHHHH
Confidence 444566899999997653 565 777788777643 567754322 1111 10 00011233455666777777
Q ss_pred HHHhHhhc--CHHHHHHHHHHHHHHHH
Q 016648 311 SKLEPLLY--NQELRETMGQAARQEME 335 (385)
Q Consensus 311 ~~i~~ll~--~~~~~~~~~~~a~~~~~ 335 (385)
+.|.+.|. ||+....+.+++.++.+
T Consensus 137 ~~I~~~L~~~dP~~a~~y~~N~~~~~~ 163 (294)
T 3hh8_A 137 KNIAKQLIAKDPKNKETYEKNLKAYVA 163 (294)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 77777665 77766666666665543
No 206
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=46.73 E-value=34 Score=27.07 Aligned_cols=107 Identities=14% Similarity=0.178 Sum_probs=61.2
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCC-CCCCcHHHHHHHh--cCCcEEEec-C
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSE-SETLGLVVLEAMS--SGIPVVGVR-A 282 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~-~e~~~~~~~Ea~a--~G~PvI~s~-~ 282 (385)
.+++++.+.+. ...+.......+..+...-+.++....+. ..|++++-.. .+.-|..+++.+. ..+|+|.-. .
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt~~ 84 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTAR 84 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHCCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEECC
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccCCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEeCC
Confidence 45666665442 23344444433444433334456555554 3588776543 2334556665554 368887542 2
Q ss_pred CC---CCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcC
Q 016648 283 GG---IPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYN 319 (385)
Q Consensus 283 ~~---~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~ 319 (385)
.. ..+.+ ..|..+++..|.+.+++.+++..++..
T Consensus 85 ~~~~~~~~~~---~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 85 DSEIDKVVGL---ELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp HHHHHHHHHH---HHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHH---HcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 22 12223 446678899999999999999887753
No 207
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=45.94 E-value=48 Score=27.72 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=50.5
Q ss_pred HHHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhc-CCcEEEecCCCCCcccc--cCC------------CCCeeEeeCCCC
Q 016648 242 EELSQAYASGDVFVMPSE-SETLGLVVLEAMSS-GIPVVGVRAGGIPDIIP--EDQ------------DGKIGYLFNPGD 305 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~-G~PvI~s~~~~~~e~~~--~~~------------~~~~g~~~~~~~ 305 (385)
..-..-+++||++|.-.. .|+|-.++++++.. ++.+|.. ..++. +.. ... ..+.-+..++.+
T Consensus 52 p~d~~~l~~Adlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~-~~~i~-l~~~~~~~~~~~~~~~~h~~~~dPHvWldp~~ 129 (286)
T 3gi1_A 52 VNDVAAIYDADLFVYHSHTLEAWARDLDPNLKKSKVDVFEA-SKPLT-LDRVKGLEDMEVTQGIDPATLYDPHTWTDPVL 129 (286)
T ss_dssp HHHHHHHHTSSEEEESCTTTSGGGTTCCTTTTTCCCEEEET-TTTSC-CCBCC---------------CBCCCGGGSHHH
T ss_pred HHHHHHHHhCCEEEEcCCCchHHHHHHHHhccCCCcEEEEC-CCCcc-ccccCCcccccccccccCCCCCCCceecCHHH
Confidence 444566899999987653 56666666666543 3444432 12222 110 000 002234455556
Q ss_pred HHHHHHHHhHhhc--CHHHHHHHHHHHHHHHHh
Q 016648 306 LDDCLSKLEPLLY--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 306 ~~~l~~~i~~ll~--~~~~~~~~~~~a~~~~~~ 336 (385)
...+++.|.+.|. ||+....+.+++.++.++
T Consensus 130 ~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 162 (286)
T 3gi1_A 130 AGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKE 162 (286)
T ss_dssp HHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence 6677777777664 777666666666665443
No 208
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=45.16 E-value=44 Score=28.73 Aligned_cols=90 Identities=13% Similarity=0.086 Sum_probs=53.4
Q ss_pred EEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCCC
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESE 261 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~e 261 (385)
.++.+|--.- | ...++++.+.++++++-+.+. ..+..++.....++. ...+++.++++ .+|+++..+...
T Consensus 4 rvgiIG~G~~--g-~~~~~~l~~~~~~~l~av~d~-~~~~~~~~~~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~~ 75 (344)
T 3ezy_A 4 RIGVIGLGRI--G-TIHAENLKMIDDAILYAISDV-REDRLREMKEKLGVE----KAYKDPHELIEDPNVDAVLVCSSTN 75 (344)
T ss_dssp EEEEECCSHH--H-HHHHHHGGGSTTEEEEEEECS-CHHHHHHHHHHHTCS----EEESSHHHHHHCTTCCEEEECSCGG
T ss_pred EEEEEcCCHH--H-HHHHHHHHhCCCcEEEEEECC-CHHHHHHHHHHhCCC----ceeCCHHHHhcCCCCCEEEEcCCCc
Confidence 4666664211 1 235677777788777644432 223334443333321 01245666777 789998877655
Q ss_pred CCcHHHHHHHhcCCcEEEec
Q 016648 262 TLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 262 ~~~~~~~Ea~a~G~PvI~s~ 281 (385)
.....+.+++..|++|++-+
T Consensus 76 ~h~~~~~~al~~gk~v~~EK 95 (344)
T 3ezy_A 76 THSELVIACAKAKKHVFCEK 95 (344)
T ss_dssp GHHHHHHHHHHTTCEEEEES
T ss_pred chHHHHHHHHhcCCeEEEEC
Confidence 44556788999999999753
No 209
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=44.78 E-value=67 Score=27.83 Aligned_cols=92 Identities=15% Similarity=0.028 Sum_probs=55.1
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCC-eEEecccChHHHHHHHHh--CcEEEEc
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMP-AVFTGMLLGEELSQAYAS--GDVFVMP 257 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~-i~~~g~~~~~~~~~~~~~--adi~v~p 257 (385)
++..++.+|--. -+...+..++.. ++++++-+.+. ..+..++...+.+ ... ..++.++++. .|+++..
T Consensus 25 ~~irvgiiG~G~--~~~~~~~~~~~~-~~~~lvav~d~-~~~~a~~~a~~~~~~~~-----~~~~~~ll~~~~vD~V~I~ 95 (361)
T 3u3x_A 25 DELRFAAVGLNH--NHIYGQVNCLLR-AGARLAGFHEK-DDALAAEFSAVYADARR-----IATAEEILEDENIGLIVSA 95 (361)
T ss_dssp -CCEEEEECCCS--TTHHHHHHHHHH-TTCEEEEEECS-CHHHHHHHHHHSSSCCE-----ESCHHHHHTCTTCCEEEEC
T ss_pred cCcEEEEECcCH--HHHHHHHHHhhc-CCcEEEEEEcC-CHHHHHHHHHHcCCCcc-----cCCHHHHhcCCCCCEEEEe
Confidence 356788888532 233445555553 77887766543 2344444444433 111 2456666765 7888877
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEec
Q 016648 258 SESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 258 s~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
+....-.-.+.+|+.+|++|++-+
T Consensus 96 tp~~~H~~~~~~al~aGkhVl~EK 119 (361)
T 3u3x_A 96 AVSSERAELAIRAMQHGKDVLVDK 119 (361)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEES
T ss_pred CChHHHHHHHHHHHHCCCeEEEeC
Confidence 654333455789999999999743
No 210
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=44.65 E-value=53 Score=28.34 Aligned_cols=88 Identities=16% Similarity=0.119 Sum_probs=53.7
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE 259 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~ 259 (385)
+..++.+|--.. |....+.++...++++++-+.+.. .+..++ ....+.. ..++.++++. .|+++..+.
T Consensus 7 ~~rvgiiG~G~~--g~~~~~~~~~~~~~~~l~av~d~~-~~~~~~--~~~~~~~-----~~~~~~ll~~~~vD~V~i~tp 76 (352)
T 3kux_A 7 KIKVGLLGYGYA--SKTFHAPLIMGTPGLELAGVSSSD-ASKVHA--DWPAIPV-----VSDPQMLFNDPSIDLIVIPTP 76 (352)
T ss_dssp CEEEEEECCSHH--HHHTHHHHHHTSTTEEEEEEECSC-HHHHHT--TCSSCCE-----ESCHHHHHHCSSCCEEEECSC
T ss_pred CceEEEECCCHH--HHHHHHHHHhhCCCcEEEEEECCC-HHHHHh--hCCCCce-----ECCHHHHhcCCCCCEEEEeCC
Confidence 456788874221 222356777778888877554432 222221 1112222 2456667776 788888776
Q ss_pred CCCCcHHHHHHHhcCCcEEE
Q 016648 260 SETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~PvI~ 279 (385)
...-.-.+.+|+..|++|++
T Consensus 77 ~~~H~~~~~~al~aGkhV~~ 96 (352)
T 3kux_A 77 NDTHFPLAQSALAAGKHVVV 96 (352)
T ss_dssp TTTHHHHHHHHHHTTCEEEE
T ss_pred hHHHHHHHHHHHHCCCcEEE
Confidence 55556667899999999997
No 211
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=44.58 E-value=42 Score=28.55 Aligned_cols=90 Identities=11% Similarity=0.062 Sum_probs=51.1
Q ss_pred EEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCC
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETL 263 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~ 263 (385)
.++.+|.-. -|...+++++.+.++++++ +.+. ..+..++...+.++.. -+.+..++. -..+|+++..+.....
T Consensus 4 ~igiIG~G~--ig~~~~~~~l~~~~~~~l~-v~d~-~~~~~~~~a~~~g~~~-~~~~~~~~l--~~~~D~V~i~tp~~~h 76 (323)
T 1xea_A 4 KIAMIGLGD--IAQKAYLPVLAQWPDIELV-LCTR-NPKVLGTLATRYRVSA-TCTDYRDVL--QYGVDAVMIHAATDVH 76 (323)
T ss_dssp EEEEECCCH--HHHHTHHHHHTTSTTEEEE-EECS-CHHHHHHHHHHTTCCC-CCSSTTGGG--GGCCSEEEECSCGGGH
T ss_pred EEEEECCCH--HHHHHHHHHHHhCCCceEE-EEeC-CHHHHHHHHHHcCCCc-cccCHHHHh--hcCCCEEEEECCchhH
Confidence 466666421 1122356777777788888 4432 2344444444433321 022223321 3678999987765555
Q ss_pred cHHHHHHHhcCCcEEEe
Q 016648 264 GLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 264 ~~~~~Ea~a~G~PvI~s 280 (385)
...+.+++..|++|++-
T Consensus 77 ~~~~~~al~~Gk~V~~E 93 (323)
T 1xea_A 77 STLAAFFLHLGIPTFVD 93 (323)
T ss_dssp HHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHCCCeEEEe
Confidence 55677899999999864
No 212
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=42.97 E-value=80 Score=24.86 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=31.0
Q ss_pred ChHHHHHHHHhCcEEEEcCCCC-----------CCcHHHHHHHhcCCcEEEecCC
Q 016648 240 LGEELSQAYASGDVFVMPSESE-----------TLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 240 ~~~~~~~~~~~adi~v~ps~~e-----------~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
+.++..+.+.+||.+++|- .+ ++-..+-|+...|+|++.+..|
T Consensus 69 ~~~~~~~~l~~ad~I~l~G-G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~sAG 122 (206)
T 3l4e_A 69 SLGEITTKLRKNDFIYVTG-GNTFFLLQELKRTGADKLILEEIAAGKLYIGESAG 122 (206)
T ss_dssp CHHHHHHHHHHSSEEEECC-SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEETHH
T ss_pred ChHHHHHHHHhCCEEEECC-CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEECHH
Confidence 3467778888999988876 22 2234577888899999987533
No 213
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=42.00 E-value=22 Score=23.92 Aligned_cols=14 Identities=21% Similarity=0.363 Sum_probs=6.7
Q ss_pred HHHHHHHhcCCcEE
Q 016648 265 LVVLEAMSSGIPVV 278 (385)
Q Consensus 265 ~~~~Ea~a~G~PvI 278 (385)
.++-.|...|+|||
T Consensus 56 sK~~kA~~lgI~Ii 69 (92)
T 1l7b_A 56 SKLEKARALGVPTL 69 (92)
T ss_dssp TTHHHHHCSSSCCE
T ss_pred hHHHHHHHcCCcEE
Confidence 44444444444444
No 214
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=41.71 E-value=1.3e+02 Score=23.88 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=91.6
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCC------CeEEecccChHHHHHHHHhCcEEE
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM------PAVFTGMLLGEELSQAYASGDVFV 255 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~------~i~~~g~~~~~~~~~~~~~adi~v 255 (385)
...++|-|++.....-..+++-+-. ....+-+.|+....+ .+.. .-.|.|-++-.++.+--+.|-..+
T Consensus 181 ~~d~iyggsfrsg~re~kmve~lfd-tgl~ieffg~~~~~q-----fknp~~pwt~~pvf~gki~~~~~~~~ns~a~a~~ 254 (351)
T 1jg7_A 181 TLDVIYGGSFRSGQRESKMVEFLFD-TGLNIEFFGNAREKQ-----FKNPKYPWTKAPVFTGKIPMNMVSEKNSQAIAAL 254 (351)
T ss_dssp CEEEEEECCCGGGTTHHHHHHHHSS-CSSCEEEESSCCGGG-----CCCTTSCCSSCCEEEECCCGGGHHHHHTTEEEEE
T ss_pred eeeeeeccccccCchHHHHHHHHHh-cCcceeeecchhHHh-----ccCCCCCCcCCCccCCcCCHHHHhhccccceEEE
Confidence 3458899988776665555554422 356777888643211 1111 357999999999988777776655
Q ss_pred EcCC----CCCCcHHHHHHHhcCCcEE-EecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHH
Q 016648 256 MPSE----SETLGLVVLEAMSSGIPVV-GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAA 330 (385)
Q Consensus 256 ~ps~----~e~~~~~~~Ea~a~G~PvI-~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a 330 (385)
...- ..-....+.|+||...-.+ -+....-..++ .+ .-+.+. +-.++.+.+.++-+++..+.++-+-.
T Consensus 255 i~gdk~y~~n~it~rvwe~~as~av~~~d~~fd~~~~i~---~~--a~fyv~--nr~elid~in~~k~~~~~r~e~l~~q 327 (351)
T 1jg7_A 255 IIGDKNYNDNFITLRVWETMASDAVMLIDEEFDTKHRII---ND--ARFYVN--NRAELIDRVNELKHSDVLRKEMLSIQ 327 (351)
T ss_dssp ECCCGGGTTTCCCHHHHHHHTSSSEEEEEGGGCTTCCSC---SC--GGGEEC--SHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred EeccccccCCeecHHHHHHHhhhhHhhhhcccCcccccc---cC--ceeEec--CHHHHHHHHhhccchHHHHHHHHHHH
Confidence 5421 2345778999999875544 33333333444 22 335655 89999999999999988887776655
Q ss_pred HHHHHh
Q 016648 331 RQEMEK 336 (385)
Q Consensus 331 ~~~~~~ 336 (385)
.+.+++
T Consensus 328 h~il~k 333 (351)
T 1jg7_A 328 HDILNK 333 (351)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 215
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=41.60 E-value=47 Score=28.11 Aligned_cols=89 Identities=17% Similarity=0.219 Sum_probs=52.1
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcC
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPS 258 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps 258 (385)
++..++.+|--.-.+ .+++++.+.++++++.+-+. ..+..++.... +... .++.++++ .+|+++..+
T Consensus 9 ~~~~igiIG~G~~g~---~~~~~l~~~~~~~~v~v~d~-~~~~~~~~~~~--~~~~-----~~~~~~l~~~~~D~V~i~t 77 (315)
T 3c1a_A 9 SPVRLALIGAGRWGK---NYIRTIAGLPGAALVRLASS-NPDNLALVPPG--CVIE-----SDWRSVVSAPEVEAVIIAT 77 (315)
T ss_dssp CCEEEEEEECTTTTT---THHHHHHHCTTEEEEEEEES-CHHHHTTCCTT--CEEE-----SSTHHHHTCTTCCEEEEES
T ss_pred CcceEEEECCcHHHH---HHHHHHHhCCCcEEEEEEeC-CHHHHHHHHhh--Cccc-----CCHHHHhhCCCCCEEEEeC
Confidence 345677777532222 34566666777776644332 22333332222 3221 34455665 789988877
Q ss_pred CCCCCcHHHHHHHhcCCcEEEe
Q 016648 259 ESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
........+.+++..|++|++-
T Consensus 78 p~~~h~~~~~~al~~Gk~v~~e 99 (315)
T 3c1a_A 78 PPATHAEITLAAIASGKAVLVE 99 (315)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHHHHHHHHHCCCcEEEc
Confidence 6555556677899999999975
No 216
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=41.32 E-value=83 Score=21.47 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=33.8
Q ss_pred CCceEEEEeCC-ccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 208 PEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 208 ~~~~l~i~G~g-~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
.++.+.+.|.- ..+..+++++...+-.+...++ ..++-+|........+.++..|...|+|||..
T Consensus 17 ~g~~i~isg~~~~~r~~l~~li~~~Gg~v~~~~s--------~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~ 82 (107)
T 3l3e_A 17 HKVVVCVSKKLSKKQSELNGIAASLGADYRRSFD--------ETVTHFIYQGRPNDTNREYKSVKERGVHIVSE 82 (107)
T ss_dssp TTCEEEECGGGGGGHHHHHHHHHHTTCEEESSCC--------TTCCEEECCCCTTCCCHHHHHHHHTTCEEECH
T ss_pred CCeEEEEeCCChHhHHHHHHHHHHcCCEEecccc--------CCceEEEecCCCCCCCHHHHHHHHCCCeEecH
Confidence 34555555521 2344555555544444444442 23444554222233457777888888888854
No 217
>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1
Probab=41.31 E-value=89 Score=26.84 Aligned_cols=83 Identities=5% Similarity=-0.058 Sum_probs=44.4
Q ss_pred HHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccCh-------------HHHHHHHHhCcEEEEcCCCCCCc
Q 016648 198 DFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLG-------------EELSQAYASGDVFVMPSESETLG 264 (385)
Q Consensus 198 ~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~-------------~~~~~~~~~adi~v~ps~~e~~~ 264 (385)
..+++++.+.+++++.-+.+... ..............+|..+. .+..+++..+|+++..+-.+...
T Consensus 14 ~~l~r~L~~~~~~elvav~d~~~-~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV~~atp~~~~~ 92 (337)
T 1cf2_P 14 KRVADAIAQQDDMKVIGVSKTRP-DFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIVIDCTPEGIGA 92 (337)
T ss_dssp HHHHHHHHTSSSEEEEEEEESSC-SHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEEEECCSTTHHH
T ss_pred HHHHHHHHcCCCcEEEEEEcCCh-hHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEEEECCCchhhH
Confidence 35778887778888766654321 11112222111111211100 13455567999998776543333
Q ss_pred HHHHHHHhcCCcEEEec
Q 016648 265 LVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 265 ~~~~Ea~a~G~PvI~s~ 281 (385)
-..-.++..|++||.+.
T Consensus 93 ~~a~~~l~aG~~VId~s 109 (337)
T 1cf2_P 93 KNLKMYKEKGIKAIFQG 109 (337)
T ss_dssp HHHHHHHHHTCCEEECT
T ss_pred HHHHHHHHcCCEEEEec
Confidence 34456788899988654
No 218
>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*
Probab=40.98 E-value=26 Score=29.96 Aligned_cols=86 Identities=12% Similarity=0.036 Sum_probs=48.7
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEEEeC-CccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCC
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGD-GPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 261 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~-g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e 261 (385)
..++.+|.-.- | ..+++++.+.++++++.+-+ .+.. .+. .++... +++.+++..+|+++..+...
T Consensus 4 irV~IiG~G~m--G-~~~~~~l~~~~~~elvav~d~~~~~-~~~-----~gv~~~-----~d~~~ll~~~DvViiatp~~ 69 (320)
T 1f06_A 4 IRVAIVGYGNL--G-RSVEKLIAKQPDMDLVGIFSRRATL-DTK-----TPVFDV-----ADVDKHADDVDVLFLCMGSA 69 (320)
T ss_dssp EEEEEECCSHH--H-HHHHHHHTTCSSEEEEEEEESSSCC-SSS-----SCEEEG-----GGGGGTTTTCSEEEECSCTT
T ss_pred CEEEEEeecHH--H-HHHHHHHhcCCCCEEEEEEcCCHHH-hhc-----CCCcee-----CCHHHHhcCCCEEEEcCCcH
Confidence 45666763111 2 24567777767777664433 2221 111 233322 23333447899999876544
Q ss_pred CCcHHHHHHHhcCCcEEEecC
Q 016648 262 TLGLVVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 262 ~~~~~~~Ea~a~G~PvI~s~~ 282 (385)
..--.+..++..|++||++.-
T Consensus 70 ~h~~~~~~al~aG~~Vv~ekp 90 (320)
T 1f06_A 70 TDIPEQAPKFAQFACTVDTYD 90 (320)
T ss_dssp THHHHHHHHHTTTSEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEECCC
Confidence 334456788999999997653
No 219
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=40.89 E-value=31 Score=29.48 Aligned_cols=91 Identities=13% Similarity=0.010 Sum_probs=53.0
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCC
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSES 260 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~ 260 (385)
..++.+|.-.-. ..+++++...++++++-+.+.. .+..++...+.++. ....++.+++. ..|+++..+..
T Consensus 6 ~rigiiG~G~ig---~~~~~~l~~~~~~~~~av~d~~-~~~~~~~a~~~~~~----~~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKVA---PRFIEGVRLAGNGEVVAVSSRT-LESAQAFANKYHLP----KAYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTTH---HHHHHHHHHHCSEEEEEEECSC-SSTTCC---CCCCS----CEESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHHH---HHHHHHHHhCCCcEEEEEEcCC-HHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEECCCc
Confidence 457777753221 2456677777777776554322 12222333333321 01256667777 78998887765
Q ss_pred CCCcHHHHHHHhcCCcEEEec
Q 016648 261 ETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
....-.+.+|+..|++|++-+
T Consensus 78 ~~h~~~~~~al~aGk~Vl~EK 98 (329)
T 3evn_A 78 QDHYKVAKAALLAGKHVLVEK 98 (329)
T ss_dssp GGHHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHHHHHHHCCCeEEEcc
Confidence 555556789999999999754
No 220
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=40.60 E-value=78 Score=26.35 Aligned_cols=93 Identities=18% Similarity=0.156 Sum_probs=52.1
Q ss_pred HHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhc-CCcEEEecCCCCCcc-cccCC------------CCCeeEeeCCCCHH
Q 016648 243 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSS-GIPVVGVRAGGIPDI-IPEDQ------------DGKIGYLFNPGDLD 307 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~-G~PvI~s~~~~~~e~-~~~~~------------~~~~g~~~~~~~~~ 307 (385)
.-..-+++||++|.-.. .|++-.++++++.. ++++|....+ +.-+ ..... ..+.-+..++.+..
T Consensus 51 ~d~~~l~~Adlvv~~G~~lE~w~~~~~~~~~~~~~~~v~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~ 129 (284)
T 3cx3_A 51 NDIAAIYDADVFVYHSHTLESWAGSLDPNLKKSKVKVLEASEG-MTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEKAG 129 (284)
T ss_dssp HHHHHHHHSSEEEESCTTTSCTTTTCCTTTTTCCCEEEETTTT-CCCCBCCC-------------CCBCCCGGGSHHHHH
T ss_pred HHHHHHHhCCEEEEcCCCcHhHHHHHHHhcccCCCeEEEccCC-ccccccCCcccccccccccCCCCCCCCcccCHHHHH
Confidence 33466899999997654 67777777776653 4555533222 1110 00000 01223455555666
Q ss_pred HHHHHHhHhhc--CHHHHHHHHHHHHHHHHh
Q 016648 308 DCLSKLEPLLY--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 308 ~l~~~i~~ll~--~~~~~~~~~~~a~~~~~~ 336 (385)
.+++.|.+.|. ||+....+.+|+..+.++
T Consensus 130 ~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 160 (284)
T 3cx3_A 130 EEAQIIADKLSEVDSEHKETYQKNAQAFIKK 160 (284)
T ss_dssp HHHHHHHHHHHHHSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 77777777665 777666677776665443
No 221
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=39.93 E-value=1.5e+02 Score=24.01 Aligned_cols=108 Identities=8% Similarity=0.107 Sum_probs=66.6
Q ss_pred CCceEEEEeCCccH-HHHHHHHcCCCeEEecccChHHHHHHHHh---CcEEEEcCC-CCCCcHHHHHHHhc-----CCcE
Q 016648 208 PEARIAFIGDGPYR-EELEKMFTGMPAVFTGMLLGEELSQAYAS---GDVFVMPSE-SETLGLVVLEAMSS-----GIPV 277 (385)
Q Consensus 208 ~~~~l~i~G~g~~~-~~l~~~~~~~~i~~~g~~~~~~~~~~~~~---adi~v~ps~-~e~~~~~~~Ea~a~-----G~Pv 277 (385)
...+++++-+.+.. ..+..............-+.++..+.+.. .|++++-.. .+.-|..+++.+.. .+|+
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~i 202 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHPAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLAI 202 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCTTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSEE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCCCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCeE
Confidence 46788888765532 33444444444444444455677776654 367776433 23346667766643 4778
Q ss_pred EE-ecCCCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 278 VG-VRAGGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 278 I~-s~~~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
|+ |...... +.+ +.|-.+++.+|-+.+++...+.++++
T Consensus 203 i~~s~~~~~~~~~~a~---~~Ga~~yl~KP~~~~~L~~~i~~~l~ 244 (259)
T 3luf_A 203 IGISVSDKRGLSARYL---KQGANDFLNQPFEPEELQCRVSHNLE 244 (259)
T ss_dssp EEEECSSSSSHHHHHH---HTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred EEEEccCCHHHHHHHH---hcChhheEcCCCCHHHHHHHHHHHHH
Confidence 74 3333222 224 56888999999999999999988764
No 222
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=38.58 E-value=83 Score=27.19 Aligned_cols=88 Identities=13% Similarity=-0.062 Sum_probs=52.3
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCC-CeEEecccChHHHHHHHHh--CcEEEEcC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM-PAVFTGMLLGEELSQAYAS--GDVFVMPS 258 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~-~i~~~g~~~~~~~~~~~~~--adi~v~ps 258 (385)
+..++.+|--.. |....+.++...++++++-+.+..... ...+. .+... .++.++++. .|+++..+
T Consensus 5 ~~rvgiiG~G~~--g~~~~~~~l~~~~~~~l~av~d~~~~~----~~~~~~~~~~~-----~~~~~ll~~~~vD~V~i~t 73 (362)
T 3fhl_A 5 IIKTGLAAFGMS--GQVFHAPFISTNPHFELYKIVERSKEL----SKERYPQASIV-----RSFKELTEDPEIDLIVVNT 73 (362)
T ss_dssp CEEEEESCCSHH--HHHTTHHHHHHCTTEEEEEEECSSCCG----GGTTCTTSEEE-----SCSHHHHTCTTCCEEEECS
T ss_pred ceEEEEECCCHH--HHHHHHHHHhhCCCeEEEEEEcCCHHH----HHHhCCCCceE-----CCHHHHhcCCCCCEEEEeC
Confidence 355777774221 122245667777888877555433211 22222 33333 344555666 89988877
Q ss_pred CCCCCcHHHHHHHhcCCcEEEe
Q 016648 259 ESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 259 ~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
....-.-.+.+|+..|++|++-
T Consensus 74 p~~~H~~~~~~al~aGkhVl~E 95 (362)
T 3fhl_A 74 PDNTHYEYAGMALEAGKNVVVE 95 (362)
T ss_dssp CGGGHHHHHHHHHHTTCEEEEE
T ss_pred ChHHHHHHHHHHHHCCCeEEEe
Confidence 6554455678999999999974
No 223
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=38.47 E-value=1.2e+02 Score=27.23 Aligned_cols=95 Identities=16% Similarity=-0.022 Sum_probs=55.5
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHc---CCC---eEEecccChHHHHHHHH--hCc
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFT---GMP---AVFTGMLLGEELSQAYA--SGD 252 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~---~~~---i~~~g~~~~~~~~~~~~--~ad 252 (385)
++..++.+|--...+ ..+.++...++++++-+.+.. .+..++... +.+ ...... ..+++.++++ ..|
T Consensus 19 ~~~rvgiIG~G~~g~---~h~~~l~~~~~~~lvav~d~~-~~~~~~~a~~~~~~g~~~~~~~~~-~~~~~~~ll~~~~vD 93 (444)
T 2ixa_A 19 KKVRIAFIAVGLRGQ---THVENMARRDDVEIVAFADPD-PYMVGRAQEILKKNGKKPAKVFGN-GNDDYKNMLKDKNID 93 (444)
T ss_dssp CCEEEEEECCSHHHH---HHHHHHHTCTTEEEEEEECSC-HHHHHHHHHHHHHTTCCCCEEECS-STTTHHHHTTCTTCC
T ss_pred CCceEEEEecCHHHH---HHHHHHHhCCCcEEEEEEeCC-HHHHHHHHHHHHhcCCCCCceecc-CCCCHHHHhcCCCCC
Confidence 456788887432212 245677777888877555432 233333221 112 222210 1236777787 478
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 253 VFVMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 253 i~v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
+++..+....-.-.+.+|+..|++|++-
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~E 121 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGME 121 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEEC
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEe
Confidence 8888776555556678899999999974
No 224
>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A
Probab=38.45 E-value=1.3e+02 Score=25.39 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=74.7
Q ss_pred HHHHHHHHhCCeEEEc--ChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChh---hHhhhcCCCCCCcEEEEEee
Q 016648 116 LVIKFLHRAADLTLVP--SVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGR 190 (385)
Q Consensus 116 ~~~~~~~~~ad~ii~~--s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~ 190 (385)
-..+.+-+.+|.|+.= .+...+.+.++- .+-|| |+.+-+...|...-.+ ..... +.-+...+.|+|-
T Consensus 88 DTarvls~~~D~iviR~~~~~~~~~lA~~~-----~vPVI-Nag~g~~~HPtQ~LaDl~Ti~e~~--g~l~glkva~vGD 159 (306)
T 4ekn_B 88 DTIRVISGYADIIVLRHPSEGAARLASEYS-----QVPII-NAGDGSNQHPTQTLLDLYTIMREI--GRIDGIKIAFVGD 159 (306)
T ss_dssp HHHHHHHHHCSEEEEECSSTTHHHHHHHHC-----SSCEE-ESCSSSSCCHHHHHHHHHHHHHHH--SCSTTCEEEEESC
T ss_pred HHHHHHHHhCcEEEEEcCChHHHHHHHHhC-----CCCEE-eCCCCCCcCcHHHHHHHHHHHHHh--CCcCCCEEEEEcC
Confidence 3556677788988873 445556665553 23344 5554333333211111 11111 2335788999997
Q ss_pred ccccccHHHHHHHHHhCCCceEEEEeCCcc--HHHHHHHHcCC--CeEEecccChHHHHHHHHhCcEEEEcCC
Q 016648 191 LGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSE 259 (385)
Q Consensus 191 ~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~--~~~l~~~~~~~--~i~~~g~~~~~~~~~~~~~adi~v~ps~ 259 (385)
.....-..-++.++..++++++.+++...+ .+.+.+.+.+. .+... +++.+.++.||++.....
T Consensus 160 ~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~-----~d~~eav~~aDvvy~~~~ 227 (306)
T 4ekn_B 160 LKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEK-----ESLDDLDDDIDVLYVTRI 227 (306)
T ss_dssp TTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEE-----SCGGGCCTTCSEEEECCC
T ss_pred CCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEE-----cCHHHHhcCCCEEEeCCc
Confidence 644445677888888887899999995432 23333333322 33332 344566889999886543
No 225
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=37.51 E-value=60 Score=28.40 Aligned_cols=90 Identities=10% Similarity=0.084 Sum_probs=53.1
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCC-CceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLP-EARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE 259 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~-~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~ 259 (385)
.+..++.+|.- . | ...++++.+.+ +++++=+.+. ..+..++.+++.++.....+ +++ +...|+++..+.
T Consensus 6 ~~~rv~VvG~G-~--g-~~h~~a~~~~~~~~elvav~~~-~~~~a~~~a~~~gv~~~~~~--~~l---~~~~D~v~i~~p 75 (372)
T 4gmf_A 6 PKQRVLIVGAK-F--G-EMYLNAFMQPPEGLELVGLLAQ-GSARSRELAHAFGIPLYTSP--EQI---TGMPDIACIVVR 75 (372)
T ss_dssp -CEEEEEECST-T--T-HHHHHTTSSCCTTEEEEEEECC-SSHHHHHHHHHTTCCEESSG--GGC---CSCCSEEEECCC
T ss_pred CCCEEEEEehH-H--H-HHHHHHHHhCCCCeEEEEEECC-CHHHHHHHHHHhCCCEECCH--HHH---hcCCCEEEEECC
Confidence 45678888863 2 3 24567777776 4676643332 23445566666676543332 554 567888776543
Q ss_pred CCCC----cHHHHHHHhcCCcEEEe
Q 016648 260 SETL----GLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 260 ~e~~----~~~~~Ea~a~G~PvI~s 280 (385)
...- --...+++..|++|++-
T Consensus 76 ~~~h~~~~~~~a~~al~aGkhVl~E 100 (372)
T 4gmf_A 76 STVAGGAGTQLARHFLARGVHVIQE 100 (372)
T ss_dssp --CTTSHHHHHHHHHHHTTCEEEEE
T ss_pred CcccchhHHHHHHHHHHcCCcEEEe
Confidence 2222 23467899999999974
No 226
>3lxy_A 4-hydroxythreonine-4-phosphate dehydrogenase; PDXA, NAD-DEPE dehydrogenase, metal-binding, NAD, NADP, oxidoreductase, PY biosynthesis; HET: SUC; 1.70A {Yersinia pestis} SCOP: c.77.1.3 PDB: 1ps6_A* 1ptm_A 1ps7_A 1r8k_A
Probab=37.24 E-value=22 Score=30.49 Aligned_cols=75 Identities=19% Similarity=0.302 Sum_probs=49.9
Q ss_pred CCeEEecccChHHHH--HHHHhCcEEEEcCCCCCCcHHHHHHHh--------cCCcEEEe--cCCCCCcccccCCCCCee
Q 016648 231 MPAVFTGMLLGEELS--QAYASGDVFVMPSESETLGLVVLEAMS--------SGIPVVGV--RAGGIPDIIPEDQDGKIG 298 (385)
Q Consensus 231 ~~i~~~g~~~~~~~~--~~~~~adi~v~ps~~e~~~~~~~Ea~a--------~G~PvI~s--~~~~~~e~~~~~~~~~~g 298 (385)
.++.+.|++|.+.+. .....+|++|.++..- |+..+-.+. .|+|+|-| |.|..-++. |. |
T Consensus 240 ~Gi~~~GP~paDt~F~~~~~~~~D~vlaMYHDQ--Glip~K~l~F~~gVNvTlGLP~iRTS~DHGTAfDIA-----Gk-G 311 (334)
T 3lxy_A 240 QGINLIGPLPADTLFQPKYLQHADAVLAMYHDQ--GLPVLKYQGFGRAVNITLGLPFIRTSVDHGTALELA-----AT-G 311 (334)
T ss_dssp TTCCEEEEECHHHHTSHHHHTTCSEEEESSHHH--HHHHHHHHHTTCCEEEEESSSSCEEEESSCCCGGGT-----TT-T
T ss_pred CCCceeCCCChHHhcChhhhccCCEEEEcccch--hhHhHHhcccCccEEEecCCCeeeecCCCCcchhhc-----cC-C
Confidence 378899999988653 5678899999886532 344444444 58888844 566666665 22 2
Q ss_pred EeeCCCCHHHHHHHHhHhh
Q 016648 299 YLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 299 ~~~~~~~~~~l~~~i~~ll 317 (385)
. -|+.++.++|....
T Consensus 312 ~----A~~~S~~~Ai~~A~ 326 (334)
T 3lxy_A 312 T----ADVGSFITALNLAI 326 (334)
T ss_dssp C----SCCHHHHHHHHHHH
T ss_pred C----CChHHHHHHHHHHH
Confidence 1 27788988887653
No 227
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=37.14 E-value=1.2e+02 Score=25.61 Aligned_cols=74 Identities=11% Similarity=-0.020 Sum_probs=44.6
Q ss_pred HHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHH--hCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 201 KRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYA--SGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 201 ~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~--~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
++++.+ ++++++-+.+. ..+..++...+.++. ....++.++++ .+|+++..+........+.+++..|++|+
T Consensus 17 ~~~l~~-~~~~~vav~d~-~~~~~~~~~~~~g~~----~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~al~~Gk~v~ 90 (332)
T 2glx_A 17 IGAIRA-TGGEVVSMMST-SAERGAAYATENGIG----KSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVL 90 (332)
T ss_dssp HHHHHH-TTCEEEEEECS-CHHHHHHHHHHTTCS----CCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred hHHhhc-CCCeEEEEECC-CHHHHHHHHHHcCCC----cccCCHHHHhcCCCCCEEEEeCChhHhHHHHHHHHHCCCeEE
Confidence 556666 77777644432 223344444333321 01245666676 48999887765544566778999999999
Q ss_pred Ee
Q 016648 279 GV 280 (385)
Q Consensus 279 ~s 280 (385)
+-
T Consensus 91 ~e 92 (332)
T 2glx_A 91 CE 92 (332)
T ss_dssp EC
T ss_pred Ee
Confidence 73
No 228
>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}
Probab=37.05 E-value=86 Score=26.90 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=28.2
Q ss_pred HHHHHHHhCcEEEE--cCCCCC---CcHHHHHHHhcCCcEEEecCC
Q 016648 243 ELSQAYASGDVFVM--PSESET---LGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 243 ~~~~~~~~adi~v~--ps~~e~---~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
++.+++++||++++ |...++ ++...++.|--|.-+|-+.-|
T Consensus 187 ~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG 232 (334)
T 3kb6_A 187 SLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARG 232 (334)
T ss_dssp CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCG
T ss_pred CHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCcc
Confidence 56778999999875 444443 467788888777777754333
No 229
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=36.33 E-value=1.5e+02 Score=25.92 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=62.4
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEE-ecC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVG-VRA 282 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~-s~~ 282 (385)
+++|+.+.+. ...+.......+..+...-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|||. |..
T Consensus 2 ~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvlT~~ 81 (387)
T 1ny5_A 2 NVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVITGH 81 (387)
T ss_dssp EEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEEET
T ss_pred EEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCC
Confidence 4555554432 233333333223333333344666666654 577776433 2334566666654 3577764 333
Q ss_pred CCCC---cccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCH
Q 016648 283 GGIP---DIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320 (385)
Q Consensus 283 ~~~~---e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~ 320 (385)
+... +.+ +.|..+++..|-+.+++...+.+++...
T Consensus 82 ~~~~~~~~a~---~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 82 GTIKTAVEAM---KMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp TCHHHHHHHH---TTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---hcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 3322 334 6688899999999999999999987643
No 230
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.22 E-value=1.2e+02 Score=21.67 Aligned_cols=62 Identities=13% Similarity=0.098 Sum_probs=35.2
Q ss_pred CCceEEEEeCC-ccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 208 PEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 208 ~~~~l~i~G~g-~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
.++.+.+.|.- ..+..+..++...+-.+...++. .++.+|.. +.-+.++..|...|+|||..
T Consensus 24 ~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~--------~~ThLI~~---~~~~~K~~~A~~~gi~IV~~ 86 (129)
T 2d8m_A 24 QGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTR--------DSTHLICA---FANTPKYSQVLGLGGRIVRK 86 (129)
T ss_dssp TTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCT--------TCCEEEES---SSSCHHHHHHHHHTCEEEET
T ss_pred CCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCC--------CCeEEEec---CCCChHHHHHHHCCCcEecH
Confidence 45555555532 23455666665555555555532 34555544 23356777777788888864
No 231
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=35.76 E-value=63 Score=27.61 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=50.4
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCc---cHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEc
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGP---YREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMP 257 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~---~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~p 257 (385)
..++.+|.-... - ..++++ .++++++-+.+.. ..+.+.+...+.++.-..+ .++.++++. .|+++..
T Consensus 3 ~rvgiiG~G~~~--~-~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~~vD~V~I~ 74 (337)
T 3ip3_A 3 LKICVIGSSGHF--R-YALEGL--DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKY---NNWWEMLEKEKPDILVIN 74 (337)
T ss_dssp EEEEEECSSSCH--H-HHHTTC--CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEEC---SSHHHHHHHHCCSEEEEC
T ss_pred eEEEEEccchhH--H-HHHHhc--CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCccc---CCHHHHhcCCCCCEEEEe
Confidence 346666642211 1 344444 5677777655432 2345555544444311122 445555654 7888877
Q ss_pred CCCCCCcHHHHHHHhcCCcEEEe
Q 016648 258 SESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 258 s~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
+....-.-.+.+|+..|++|++-
T Consensus 75 tp~~~H~~~~~~al~aGkhVl~E 97 (337)
T 3ip3_A 75 TVFSLNGKILLEALERKIHAFVE 97 (337)
T ss_dssp SSHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCcchHHHHHHHHHHCCCcEEEe
Confidence 65333344578999999999963
No 232
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=35.23 E-value=85 Score=21.72 Aligned_cols=108 Identities=11% Similarity=0.093 Sum_probs=58.4
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh-CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEEecCC
Q 016648 210 ARIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS-GDVFVMPSE-SETLGLVVLEAMS---SGIPVVGVRAG 283 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~-adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~s~~~ 283 (385)
.+++++.+.+. ...+..........+.-.-+.++....+.. .|++++-.. .+.-|..+++.+. ..+|+|.....
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~ 83 (135)
T 3eqz_A 4 NRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLNKQDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGY 83 (135)
T ss_dssp CEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCCTTEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESS
T ss_pred ceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhccCCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEec
Confidence 45666665443 334444444332112222222444333322 577776544 2334555665554 35777754322
Q ss_pred CC------Cc---ccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCH
Q 016648 284 GI------PD---IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQ 320 (385)
Q Consensus 284 ~~------~e---~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~ 320 (385)
.. .. .. ..|..+++..|-+.+++.+++.++....
T Consensus 84 ~~~~~~~~~~~~~~~---~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 84 DSGVLHSAETLALSC---GLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp CHHHHHHHHHHHHHT---TCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred cchhHHHHHHHHHHc---CCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 21 11 23 4456689999999999999999988754
No 233
>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*
Probab=35.18 E-value=11 Score=31.45 Aligned_cols=41 Identities=20% Similarity=0.048 Sum_probs=27.8
Q ss_pred HHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCC
Q 016648 243 ELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAG 283 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~ 283 (385)
++.+++..+|+++-.+..+..-..+..++..|+|+|+...+
T Consensus 65 dl~~~l~~~DvVIDft~p~~~~~~~~~a~~~G~~vVigTtG 105 (273)
T 1dih_A 65 SLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTG 105 (273)
T ss_dssp CSTTTTTSCSEEEECSCHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred CHHHHhcCCCEEEEcCChHHHHHHHHHHHhCCCCEEEECCC
Confidence 34455668999995554333344566789999999985554
No 234
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=35.03 E-value=85 Score=24.63 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=43.5
Q ss_pred hCcEEEEcCC-CCCCcHHHHHHHh----cCCcEEE-ecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 250 SGDVFVMPSE-SETLGLVVLEAMS----SGIPVVG-VRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 250 ~adi~v~ps~-~e~~~~~~~Ea~a----~G~PvI~-s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
..|++++-.. .+.-|..+++.+. ..+|||. |..............|..|++..|.+.+++.++|..++.
T Consensus 54 ~~dlvllD~~mp~~~G~~~~~~lr~~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 128 (225)
T 3klo_A 54 SIQMLVIDYSRISDDVLTDYSSFKHISCPDAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQ 128 (225)
T ss_dssp GCCEEEEEGGGCCHHHHHHHHHHHHHHCTTCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhhCCCCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHC
Confidence 3577776433 2334556666554 3678764 333322222111156788999999999999999999886
No 235
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=34.89 E-value=48 Score=23.16 Aligned_cols=71 Identities=15% Similarity=0.021 Sum_probs=42.6
Q ss_pred HHHHhCcEEEEcCCCCCC-----cHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 246 QAYASGDVFVMPSESETL-----GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 246 ~~~~~adi~v~ps~~e~~-----~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.-++.||++|......+. ---+-.|-..|+|+|+-...+..+.- .. -.+.+--+-.-+.+.+.++|...++
T Consensus 34 ~~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV~~~g~~~~P-~~-l~~~a~~iV~Wn~~~I~~aI~~~~~ 109 (111)
T 1eiw_A 34 ATPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITVRPYGLENVP-PE-LEAVSSEVVGWNPHCIRDALEDALD 109 (111)
T ss_dssp CCSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEECCSSSSCCC-TT-HHHHCSEEECSCHHHHHHHHHHHHC
T ss_pred CccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEEEcCCCCcCC-HH-HHhhCceeccCCHHHHHHHHHhccC
Confidence 557889998876543332 23366788899999987665543221 00 0111211224588999999987653
No 236
>4aty_A Terephthalate 1,2-CIS-dihydrodiol dehydrogenase; oxidoreductase; 1.85A {Burkholderia xenovorans LB400}
Probab=33.87 E-value=18 Score=31.38 Aligned_cols=76 Identities=21% Similarity=0.125 Sum_probs=47.2
Q ss_pred CCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHH--------hcCCcEEEe--cCCCCCcccccCCCCCeeE
Q 016648 230 GMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAM--------SSGIPVVGV--RAGGIPDIIPEDQDGKIGY 299 (385)
Q Consensus 230 ~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~--------a~G~PvI~s--~~~~~~e~~~~~~~~~~g~ 299 (385)
+.++.+.|++|.+.+.. -++.|++|.-+.. .|+..+-++ -.|+|+|-| |.|..-++. |.+
T Consensus 255 ~~gi~v~GP~paDt~F~-~~~~D~vlaMYHD--Qgl~p~K~l~f~~~vnitlGLp~iRtS~dHGta~dia-----gkg-- 324 (349)
T 4aty_A 255 DDGMTVIGPQGADLLLT-NPDIDVFVAMYHD--QGHIPVKLRAGRHSAALSIGAGVLFSSVGHGSGFDIA-----GTL-- 324 (349)
T ss_dssp HC-CCEEEEECHHHHTT-CTTCSEEEESSHH--HHHHHHHHHHTTSEEEEEESSSSEEEECCSCCCTTST-----TTT--
T ss_pred HCCCeEeCCCchhhhhc-cCCCCEEEEcccc--cchHHHHhcccCCcEEEecCCCeeEeCCCCChhhhhc-----cCC--
Confidence 34688899999886642 2457888755432 344444444 468898843 666666666 322
Q ss_pred eeCCCCHHHHHHHHhHhhc
Q 016648 300 LFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 300 ~~~~~~~~~l~~~i~~ll~ 318 (385)
--|+.++.++|.-+.+
T Consensus 325 ---~a~~~s~~~Ai~~a~~ 340 (349)
T 4aty_A 325 ---LADPAPLLGAIRLVTT 340 (349)
T ss_dssp ---CCCCHHHHHHHHHHHH
T ss_pred ---CCChHHHHHHHHHHHH
Confidence 1277889999876653
No 237
>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}
Probab=32.92 E-value=77 Score=27.16 Aligned_cols=88 Identities=16% Similarity=0.088 Sum_probs=49.2
Q ss_pred EEEEEeeccccccHHHHHH-HHHhCCCceEEEEeCC-ccHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC
Q 016648 184 LIVHVGRLGVEKSLDFLKR-VMDRLPEARIAFIGDG-PYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE 259 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~-a~~~~~~~~l~i~G~g-~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~ 259 (385)
.++.+|--.- |....+. ++...++++++-+.+. +... +......++... .++.++++. .|+++..+.
T Consensus 4 rvgiiG~G~~--g~~~~~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~~~~~~~-----~~~~~ll~~~~~D~V~i~tp 74 (345)
T 3f4l_A 4 NCAFIGFGKS--TTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIYSHIHFT-----SDLDEVLNDPDVKLVVVCTH 74 (345)
T ss_dssp EEEEECCSHH--HHHHTHHHHTTCTTTEEEEEEECSSCCGG--GGSGGGTTCEEE-----SCTHHHHTCTTEEEEEECSC
T ss_pred EEEEEecCHH--HHHHHHHHHHhcCCCeEEEEEEcCCHhHH--HHHHhcCCCceE-----CCHHHHhcCCCCCEEEEcCC
Confidence 4566664211 1122345 4456678888755543 2222 222222244433 344555665 788888775
Q ss_pred CCCCcHHHHHHHhcCCcEEEe
Q 016648 260 SETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~PvI~s 280 (385)
...-.-.+.+|+..|++|++-
T Consensus 75 ~~~h~~~~~~al~aGk~Vl~E 95 (345)
T 3f4l_A 75 ADSHFEYAKRALEAGKNVLVE 95 (345)
T ss_dssp GGGHHHHHHHHHHTTCEEEEC
T ss_pred hHHHHHHHHHHHHcCCcEEEe
Confidence 554455678999999999963
No 238
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}
Probab=32.89 E-value=31 Score=27.78 Aligned_cols=41 Identities=12% Similarity=0.170 Sum_probs=27.5
Q ss_pred HHHHHHH-HhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecC
Q 016648 242 EELSQAY-ASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRA 282 (385)
Q Consensus 242 ~~~~~~~-~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~ 282 (385)
+++.+++ ..+|+++..+..+...-.+.+++..|++||+...
T Consensus 41 ~~~~~l~~~~~DvVv~~~~~~~~~~~~~~~l~~G~~vv~~~~ 82 (236)
T 2dc1_A 41 RGIDEFLQREMDVAVEAASQQAVKDYAEKILKAGIDLIVLST 82 (236)
T ss_dssp SSHHHHTTSCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCG
T ss_pred CCHHHHhcCCCCEEEECCCHHHHHHHHHHHHHCCCcEEEECc
Confidence 3445555 6889988776544334446788889999987643
No 239
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=32.75 E-value=1.3e+02 Score=25.96 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCcEEEEEeeccccc----cHHHHHHHHHhCCCceEEEEe--CCccHHHHHHHHcCCCeEEecccChHHHHHHHHh--Cc
Q 016648 181 DKPLIVHVGRLGVEK----SLDFLKRVMDRLPEARIAFIG--DGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GD 252 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k----~~~~l~~a~~~~~~~~l~i~G--~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--ad 252 (385)
++..+..+|.-...+ .+..+..++...++++++-+. +....+.+.+...-.++. .++.++++. .|
T Consensus 24 kkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y-------~d~~ell~~~~iD 96 (393)
T 4fb5_A 24 KPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKAT-------ADWRALIADPEVD 96 (393)
T ss_dssp CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEE-------SCHHHHHHCTTCC
T ss_pred CCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeec-------CCHHHHhcCCCCc
Q ss_pred EEEEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 253 VFVMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 253 i~v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
+++..+....-.-.+.+|+.+|++|++
T Consensus 97 aV~IatP~~~H~~~a~~al~aGkhVl~ 123 (393)
T 4fb5_A 97 VVSVTTPNQFHAEMAIAALEAGKHVWC 123 (393)
T ss_dssp EEEECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred EEEECCChHHHHHHHHHHHhcCCeEEE
No 240
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=32.62 E-value=33 Score=26.07 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=23.8
Q ss_pred HHHHhCcEEEEcC----CCCCCcHHHHHHHhcCCcEEEec
Q 016648 246 QAYASGDVFVMPS----ESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 246 ~~~~~adi~v~ps----~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
..+..||++|... ...|...=+-=|.+.|+||++-.
T Consensus 77 ~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 77 TGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 4589999988631 12233333445889999999874
No 241
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=31.61 E-value=91 Score=26.02 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=0.0
Q ss_pred CCceEEEEeCCccHHHHHHHHcC----CCeEEecccCh-----------HHHHHHHH--hCcEEEEcCCCCCCcHHHHHH
Q 016648 208 PEARIAFIGDGPYREELEKMFTG----MPAVFTGMLLG-----------EELSQAYA--SGDVFVMPSESETLGLVVLEA 270 (385)
Q Consensus 208 ~~~~l~i~G~g~~~~~l~~~~~~----~~i~~~g~~~~-----------~~~~~~~~--~adi~v~ps~~e~~~~~~~Ea 270 (385)
+.+++-|+|-|..-......... .++.+.+-.+. .++.++++ ..|+++..+....-.-.+.+|
T Consensus 6 ~~~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a~~~g~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~a 85 (294)
T 1lc0_A 6 GKFGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDYIRQF 85 (294)
T ss_dssp CSEEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHHHHHH
T ss_pred CcceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHHHHcCCCCCCHHHHhcCCCCCEEEEeCCcHhHHHHHHHH
Q ss_pred HhcCCcEEE
Q 016648 271 MSSGIPVVG 279 (385)
Q Consensus 271 ~a~G~PvI~ 279 (385)
+..|++|++
T Consensus 86 l~aGkhVl~ 94 (294)
T 1lc0_A 86 LQAGKHVLV 94 (294)
T ss_dssp HHTTCEEEE
T ss_pred HHCCCcEEE
No 242
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=31.23 E-value=1.8e+02 Score=24.44 Aligned_cols=90 Identities=11% Similarity=-0.018 Sum_probs=51.2
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCC-CeEEecccChHHHHHHH-------HhCcEE
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM-PAVFTGMLLGEELSQAY-------ASGDVF 254 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~-~i~~~g~~~~~~~~~~~-------~~adi~ 254 (385)
..++.+|.-+.. -...++++... +.+++-+.+..... ....... ...+.... +++.+++ ...|++
T Consensus 4 irvgiIG~gG~i--~~~h~~~l~~~-~~~lvav~d~~~~~--~~~~~~~~~~~~~~~~--~~ll~~~~~l~~~~~~vD~V 76 (312)
T 3o9z_A 4 TRFALTGLAGYI--APRHLKAIKEV-GGVLVASLDPATNV--GLVDSFFPEAEFFTEP--EAFEAYLEDLRDRGEGVDYL 76 (312)
T ss_dssp CEEEEECTTSSS--HHHHHHHHHHT-TCEEEEEECSSCCC--GGGGGTCTTCEEESCH--HHHHHHHHHHHHTTCCCSEE
T ss_pred eEEEEECCChHH--HHHHHHHHHhC-CCEEEEEEcCCHHH--HHHHhhCCCCceeCCH--HHHHHHhhhhcccCCCCcEE
Confidence 457777752110 12456666665 56666555432211 1222222 34444433 6666543 457888
Q ss_pred EEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 255 VMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 255 v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
+..+....-.-.+.+|+.+|++|++
T Consensus 77 ~I~tP~~~H~~~~~~al~aGkhVl~ 101 (312)
T 3o9z_A 77 SIASPNHLHYPQIRMALRLGANALS 101 (312)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred EECCCchhhHHHHHHHHHCCCeEEE
Confidence 8877655556668899999999996
No 243
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=31.08 E-value=66 Score=22.58 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=36.5
Q ss_pred eEEecccChHHHHHHHHhCcEEEEcCCC--CCCcHHHHHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHH
Q 016648 233 AVFTGMLLGEELSQAYASGDVFVMPSES--ETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCL 310 (385)
Q Consensus 233 i~~~g~~~~~~~~~~~~~adi~v~ps~~--e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~ 310 (385)
+++.-++|.+.+.++++.++.++..-.. .+++.-+-. ..|.++ ..-+. +-.|. +-+++++.
T Consensus 47 ~r~~~P~d~~~l~~~~~~~~~vvvvE~~~~G~l~~~i~~--~~~~~~-------~~~i~-----~~~G~---~~~~~ei~ 109 (118)
T 3ju3_A 47 LKMFSPFPTEFVKNVLSSANLVIDVESNYTAQAAQMIKL--YTGIDI-------KNKIL-----KYNGR---HMTEDEIL 109 (118)
T ss_dssp ECSSCSCCHHHHHHHHTTCSCCCCCCCCCCCCHHHHHHH--HHCCCC-------CCCCC-----CBTTB---CCCHHHHH
T ss_pred ECeEecCCHHHHHHHHcCCCEEEEEECCCCCcHHHHHHH--HcCCCc-------eeEEe-----eeCCe---eCCHHHHH
Confidence 3345566777788888888776655332 233333322 334321 11111 22232 34888999
Q ss_pred HHHhHhh
Q 016648 311 SKLEPLL 317 (385)
Q Consensus 311 ~~i~~ll 317 (385)
+.+.+++
T Consensus 110 ~~i~~~~ 116 (118)
T 3ju3_A 110 KSAKEIL 116 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887765
No 244
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=30.49 E-value=2.3e+02 Score=23.45 Aligned_cols=149 Identities=13% Similarity=0.109 Sum_probs=72.0
Q ss_pred HHHHHHHhCCeEEEcChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeecccccc
Q 016648 117 VIKFLHRAADLTLVPSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRLGVEKS 196 (385)
Q Consensus 117 ~~~~~~~~ad~ii~~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~k~ 196 (385)
..++.-.+.|.|++........+..... .+-++..++..........+ ...++..+-+..... .
T Consensus 62 ~~~l~~~~~DlIiai~t~aa~a~~~~~~----~iPVVf~~v~dp~~~~l~~~--------~~~~g~nvtGv~~~~----~ 125 (302)
T 3lkv_A 62 ARQFVGENPDVLVGIATPTAQALVSATK----TIPIVFTAVTDPVGAKLVKQ--------LEQPGKNVTGLSDLS----P 125 (302)
T ss_dssp HHHHHTTCCSEEEEESHHHHHHHHHHCS----SSCEEEEEESCTTTTTSCSC--------SSSCCSSEEEEECCC----C
T ss_pred HHHHHhcCCcEEEEcCCHHHHHHHhhcC----CCCeEEEecCCcchhhhccc--------ccCCCCcEEEEECCc----C
Confidence 4556667899999988877777766532 23333333321111000000 011222222222222 2
Q ss_pred HHHHHHHHHhC-CCc-eEEEEeCCcc------HHHHHHHHcCCCeE--EecccChHHHHH----HHHhCcEEEEcCCC--
Q 016648 197 LDFLKRVMDRL-PEA-RIAFIGDGPY------REELEKMFTGMPAV--FTGMLLGEELSQ----AYASGDVFVMPSES-- 260 (385)
Q Consensus 197 ~~~l~~a~~~~-~~~-~l~i~G~g~~------~~~l~~~~~~~~i~--~~g~~~~~~~~~----~~~~adi~v~ps~~-- 260 (385)
+..-++.++++ |+. ++.++++... .+.+++...+.++. .....+.+++.. +....|++..+...
T Consensus 126 ~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~~~~d~i~~~~d~~~ 205 (302)
T 3lkv_A 126 VEQHVELIKEILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIAEKSDVIYALIDNTV 205 (302)
T ss_dssp HHHHHHHHHHHSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHHTTCSEEEECSCHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhccCCeeEEEEeCCcch
Confidence 34444555443 654 4545554322 23344444444433 333344455443 44567888776531
Q ss_pred -CCCcHHHHHHHhcCCcEEEec
Q 016648 261 -ETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 261 -e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
........-+...++|+++.+
T Consensus 206 ~~~~~~i~~~~~~~~iPv~~~~ 227 (302)
T 3lkv_A 206 ASAIEGMIVAANQAKTPVFGAA 227 (302)
T ss_dssp HHTHHHHHHHHHHTTCCEEESS
T ss_pred hhHHHHHHHHHhhcCCceeecc
Confidence 122333445677899999864
No 245
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=30.17 E-value=36 Score=26.53 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=28.0
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCcH--HHHHHHh------cCCcEEEecCCCC
Q 016648 242 EELSQAYASGDVFVMPSESETLGL--VVLEAMS------SGIPVVGVRAGGI 285 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~~e~~~~--~~~Ea~a------~G~PvI~s~~~~~ 285 (385)
+.-.-+...||.+|.-. .|+|+ =++|++. .++||+.-+..++
T Consensus 89 ~Rk~~~~~~sda~IvlP--GG~GTl~El~e~lt~~q~g~~~kPvvll~~~g~ 138 (191)
T 1t35_A 89 ERKAKMSELADGFISMP--GGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGY 138 (191)
T ss_dssp HHHHHHHHHCSEEEECS--CCHHHHHHHHHHHHTTSCSSCCCCEEEECGGGT
T ss_pred HHHHHHHHHCCEEEEeC--CCccHHHHHHHHHHHHHhCCCCCCEEEecCCcc
Confidence 34445677899877543 24444 3788885 7899998876443
No 246
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=29.74 E-value=1.2e+02 Score=21.37 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=32.0
Q ss_pred HHHHHHHH---hCcEEEEcCC-CCCCcHHHHHHHhc--CCcEEEecC---CCC---CcccccCCCCCeeEeeCCCCHHHH
Q 016648 242 EELSQAYA---SGDVFVMPSE-SETLGLVVLEAMSS--GIPVVGVRA---GGI---PDIIPEDQDGKIGYLFNPGDLDDC 309 (385)
Q Consensus 242 ~~~~~~~~---~adi~v~ps~-~e~~~~~~~Ea~a~--G~PvI~s~~---~~~---~e~~~~~~~~~~g~~~~~~~~~~l 309 (385)
++....+. ..|++++-.. .+.-|..+++.+.. ..|+|.-.. ... .+.+ ..|..+++..|-+.+++
T Consensus 49 ~~al~~l~~~~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~iiil~~~~~~~~~~~~~~~---~~ga~~~l~KP~~~~~l 125 (145)
T 3kyj_B 49 QEALDKLAAQPNVDLILLDIEMPVMDGMEFLRHAKLKTRAKICMLSSVAVSGSPHAARAR---ELGADGVVAKPSGTVSH 125 (145)
T ss_dssp HHHHHHHHHCTTCCEEEECTTSCCCTTCHHHHHHHHHCCCEEC-CBSSCSTTSSHHHHHH---HTTCSCCCBCCCSCC--
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEeccCChHHHHHHH---hCCCCEEEeCCCCHHHH
Confidence 44444443 3477776433 23345556655442 345543221 111 2333 55677888888886655
Q ss_pred HHHHh
Q 016648 310 LSKLE 314 (385)
Q Consensus 310 ~~~i~ 314 (385)
...+.
T Consensus 126 ~~~i~ 130 (145)
T 3kyj_B 126 DLEEK 130 (145)
T ss_dssp ----C
T ss_pred HHHHH
Confidence 54443
No 247
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=29.34 E-value=1e+02 Score=25.66 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=18.7
Q ss_pred hCcEEEEcCCCCCCcHHHHHHHhcCCcEE
Q 016648 250 SGDVFVMPSESETLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 250 ~adi~v~ps~~e~~~~~~~Ea~a~G~PvI 278 (385)
..|+.+.....+...-.+.|++..|++++
T Consensus 64 ~~D~viI~tP~~~~~~~~~ea~~~Gi~~i 92 (288)
T 2nu8_A 64 GATASVIYVPAPFCKDSILEAIDAGIKLI 92 (288)
T ss_dssp CCCEEEECCCGGGHHHHHHHHHHTTCSEE
T ss_pred CCCEEEEecCHHHHHHHHHHHHHCCCCEE
Confidence 67777766555555666667777776653
No 248
>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1r0l_A*
Probab=29.23 E-value=2.9e+02 Score=24.21 Aligned_cols=84 Identities=19% Similarity=0.164 Sum_probs=44.0
Q ss_pred ccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEe-cccChHHHHHHHHh-CcEEEEcCCCCCCcHHHHHHHh
Q 016648 195 KSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFT-GMLLGEELSQAYAS-GDVFVMPSESETLGLVVLEAMS 272 (385)
Q Consensus 195 k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~-g~~~~~~~~~~~~~-adi~v~ps~~e~~~~~~~Ea~a 272 (385)
++++.+.+.++++. .+.+.+.+......+++.....++.+. |. +.+.++... +|+++........-...++|+.
T Consensus 40 ~ni~~l~~~~~~f~-~~~v~v~d~~~~~~l~~~l~~~~~~v~~g~---~~~~el~~~~iDvVV~ai~G~aGl~ptlaAi~ 115 (388)
T 1r0k_A 40 RNVKDLADAAKRTN-AKRAVIADPSLYNDLKEALAGSSVEAAAGA---DALVEAAMMGADWTMAAIIGCAGLKATLAAIR 115 (388)
T ss_dssp SCHHHHHHHHHHTT-CSEEEESCGGGHHHHHHHTTTCSSEEEESH---HHHHHHHTSCCSEEEECCCSGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-CcEEEEcChHHHHHHHHHhccCCcEEEeCc---cHHHHHHcCCCCEEEEeCCCHHHHHHHHHHHH
Confidence 45666666665552 233444433333344443332233322 22 444445432 6888876533221234688999
Q ss_pred cCCcEEEecC
Q 016648 273 SGIPVVGVRA 282 (385)
Q Consensus 273 ~G~PvI~s~~ 282 (385)
+|+.|++.|-
T Consensus 116 aGK~VvlANK 125 (388)
T 1r0k_A 116 KGKTVALANK 125 (388)
T ss_dssp TTSEEEECCS
T ss_pred CCCEEEEeCc
Confidence 9999998753
No 249
>3h05_A Uncharacterized protein VPA0413; nucleotidylyl, transferase, MCSG, midwest center for structu genomics, PSI; 1.65A {Vibrio parahaemolyticus}
Probab=28.97 E-value=88 Score=23.90 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=41.6
Q ss_pred cHHHHHHHHHhCCCceEEE-EeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcC
Q 016648 196 SLDFLKRVMDRLPEARIAF-IGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSG 274 (385)
Q Consensus 196 ~~~~l~~a~~~~~~~~l~i-~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G 274 (385)
-++.+-..-+.+|+.++.+ +|.. .+..+. .+ .+..++++.+++++.|...+-.++.+-+.++.|
T Consensus 85 T~dTl~~l~~~~p~~~~~~iiG~D----~l~~l~--------~W---~~~~~l~~~~~~vv~~r~~~iSST~IR~~i~~g 149 (177)
T 3h05_A 85 TYALLEKIQEIYPTADITFVIGPD----NFFKFA--------KF---YKAEEITERWTVMACPEKVKIRSTDIRNALIEG 149 (177)
T ss_dssp HHHHHHHHHHHSTTSEEEEEECHH----HHHTGG--------GS---TTHHHHHHHSEEEECCCSSCCCHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhcCCCeEEEEecc----hhhhcc--------cc---hhHHHHHHhCCEEEEcCCCCCcHHHHHHHHHcC
Confidence 3555555555668888654 5632 122211 12 245567888999998876666778888888888
Q ss_pred Cc
Q 016648 275 IP 276 (385)
Q Consensus 275 ~P 276 (385)
.+
T Consensus 150 ~~ 151 (177)
T 3h05_A 150 KD 151 (177)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 250
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}
Probab=28.68 E-value=2.3e+02 Score=24.33 Aligned_cols=92 Identities=17% Similarity=0.237 Sum_probs=0.0
Q ss_pred hCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChH-------------HHHHHHHhCcEEEE-----cCCCCCCcHHH
Q 016648 206 RLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGE-------------ELSQAYASGDVFVM-----PSESETLGLVV 267 (385)
Q Consensus 206 ~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~-------------~~~~~~~~adi~v~-----ps~~e~~~~~~ 267 (385)
.+.+-++-|+|-|..-..+.+.+...+..+.++=+.. ++.+++++||++++ +....-++...
T Consensus 170 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~ 249 (345)
T 4g2n_A 170 GLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDR 249 (345)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHTTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHH
T ss_pred ccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhcCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHH
Q ss_pred HHHHhcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhH
Q 016648 268 LEAMSSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEP 315 (385)
Q Consensus 268 ~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 315 (385)
+..|--|.-+| ..+-..++ |.+++.+++..
T Consensus 250 l~~mk~gailI---N~aRG~~v---------------de~aL~~aL~~ 279 (345)
T 4g2n_A 250 IAKIPEGAVVI---NISRGDLI---------------NDDALIEALRS 279 (345)
T ss_dssp HHHSCTTEEEE---ECSCGGGB---------------CHHHHHHHHHH
T ss_pred HhhCCCCcEEE---ECCCCchh---------------CHHHHHHHHHh
No 251
>3kip_A 3-dehydroquinase, type II; lyase; 2.95A {Candida albicans}
Probab=27.72 E-value=1.4e+02 Score=22.43 Aligned_cols=64 Identities=13% Similarity=0.214 Sum_probs=39.3
Q ss_pred Cc-EEEEcCCCCCCcHHHHHHH-hcCCcEEEecCCCC--Cc------ccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 251 GD-VFVMPSESETLGLVVLEAM-SSGIPVVGVRAGGI--PD------IIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 251 ad-i~v~ps~~e~~~~~~~Ea~-a~G~PvI~s~~~~~--~e------~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.| +++.|.-+.-.+..+.+|+ +.++|+|=--.+.+ +| ++ .+...|.++.. -.+...-+++.+++
T Consensus 84 ~dgIIINpgAyTHtSvAlrDAL~~v~~P~VEVHiSNihaRE~FRh~S~~---s~~a~GvI~G~-G~~gY~lAl~~l~~ 157 (167)
T 3kip_A 84 VGFVVINAGAYTHTSVGIRDALLGTAIPFIEVHITNVHQREPFRHQSYL---SDKAVAVICGL-GVYGYTAAIEYALN 157 (167)
T ss_dssp CCEEEEECGGGGGTCHHHHHHHHHTTCCEEEEESSCGGGSCGGGGCCSS---GGGSSEEEESS-TTHHHHHHHHHHTT
T ss_pred ccEEEEccccceeccHHHHHHHHhcCCCEEEEEcCCccccccchhcccc---cccceEEEEeC-ChhhHHHHHHHHHH
Confidence 44 5667876667788999988 56899984433321 23 23 23345666654 45667666666654
No 252
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=27.57 E-value=43 Score=25.08 Aligned_cols=36 Identities=19% Similarity=0.049 Sum_probs=23.6
Q ss_pred HHHHhCcEEEEcCC-CCCCcHHHH---HHHhcCCcEEEec
Q 016648 246 QAYASGDVFVMPSE-SETLGLVVL---EAMSSGIPVVGVR 281 (385)
Q Consensus 246 ~~~~~adi~v~ps~-~e~~~~~~~---Ea~a~G~PvI~s~ 281 (385)
..+..||++|.-.. .+.=+.+.. =|.+.|+||++-.
T Consensus 74 ~~i~~aD~vvA~ldg~~~D~GT~~EiGyA~A~gkPVv~~~ 113 (157)
T 1f8y_A 74 NGIKTNDIMLGVYIPDEEDVGLGMELGYALSQGKYVLLVI 113 (157)
T ss_dssp HHHHTSSEEEEECCGGGCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHhCCEEEEEcCCCCCCccHHHHHHHHHHCCCeEEEEE
Confidence 45799999875432 122234444 4889999999764
No 253
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=27.52 E-value=1.6e+02 Score=25.57 Aligned_cols=93 Identities=11% Similarity=-0.015 Sum_probs=52.7
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 261 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e 261 (385)
...++.+|.-.- | ..+.+.+.+. .++.+++.. .+..+++.......-....+.+++.++++++|+++......
T Consensus 16 ~~~v~IiGaG~i--G-~~ia~~L~~~--~~V~V~~R~--~~~a~~la~~~~~~~~d~~~~~~l~~ll~~~DvVIn~~P~~ 88 (365)
T 2z2v_A 16 HMKVLILGAGNI--G-RAIAWDLKDE--FDVYIGDVN--NENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp CCEEEEECCSHH--H-HHHHHHHTTT--SEEEEEESC--HHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSCEEECCCHH
T ss_pred CCeEEEEcCCHH--H-HHHHHHHHcC--CeEEEEECC--HHHHHHHHhhCCeEEEecCCHHHHHHHHhCCCEEEECCChh
Confidence 456777774221 1 2233333333 566666643 45556655443322222334478899999999999864311
Q ss_pred CCcHHHHHHHhcCCcEEEec
Q 016648 262 TLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 262 ~~~~~~~Ea~a~G~PvI~s~ 281 (385)
-....+..++..|+.++...
T Consensus 89 ~~~~v~~a~l~~G~~~vD~s 108 (365)
T 2z2v_A 89 LGFKSIKAAIKSKVDMVDVS 108 (365)
T ss_dssp HHHHHHHHHHHTTCCEEECC
T ss_pred hhHHHHHHHHHhCCeEEEcc
Confidence 11234567788999998643
No 254
>2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A
Probab=27.41 E-value=1e+02 Score=25.45 Aligned_cols=74 Identities=9% Similarity=0.015 Sum_probs=43.6
Q ss_pred ChHHHHHHHHhCcEEEEcCC--CCCCcHHHHHHHhcCCcEEEe--cCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhH
Q 016648 240 LGEELSQAYASGDVFVMPSE--SETLGLVVLEAMSSGIPVVGV--RAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEP 315 (385)
Q Consensus 240 ~~~~~~~~~~~adi~v~ps~--~e~~~~~~~Ea~a~G~PvI~s--~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 315 (385)
+.+....++..||+++.+.. ..+.=-.+++....+.++|.. ..+-.++++...-+.-.|..+. |++.+.+.|..
T Consensus 176 p~~~~e~ll~~aD~viiTGsTlvN~Ti~~lL~~~~~a~~vvl~GPS~p~~P~lf~~Gv~~l~G~~V~--D~~~~~~~i~~ 253 (270)
T 2h1q_A 176 PLPASEFILPECDYVYITCASVVDKTLPRLLELSRNARRITLVGPGTPLAPVLFEHGLQELSGFMVK--DNARAFRIVAG 253 (270)
T ss_dssp EGGGHHHHGGGCSEEEEETHHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEEEEEEES--CHHHHHHHHTT
T ss_pred ChHHHHHHhhcCCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecChhhhHHHHhcCcCEEEEeEec--CHHHHHHHHHc
Confidence 44667778999999998743 112222356666555455543 3455666662111223566665 88888877764
No 255
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=27.14 E-value=1.3e+02 Score=20.64 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=39.6
Q ss_pred HHHHHH-hcCCcEEEecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHH-h-CCHHHH
Q 016648 266 VVLEAM-SSGIPVVGVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLYNQELRETMGQAARQEME-K-YDWRAA 342 (385)
Q Consensus 266 ~~~Ea~-a~G~PvI~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~-~-~s~~~~ 342 (385)
.+++.. ..|-||+.+..|. +.. .+++..+.+.+.+.+ .++.+++..+.+.+.-.+..+ + .+++.+
T Consensus 22 ~ll~~v~~~~epViITr~G~-~~a----------Vl~s~e~ye~l~etl-~LL~~~~~~~~L~~a~~~~~~G~~~s~eev 89 (108)
T 3g5o_A 22 EFVDAVSSTQDQITITKNGA-PAA----------VLVGADEWESLQETL-YWLAQPGIRESIAEADADIASGRTYGEDEI 89 (108)
T ss_dssp HHHHHHHTSSCEEEEEETTE-EEE----------EEEEHHHHHHHHHHH-HHHTSTTHHHHHHHHHHHHHHTCEECHHHH
T ss_pred HHHHHHHhhCCcEEEEECCC-CcE----------EEecHHHHHHHHHHH-HHhcChHHHHHHHHHHHHHHcCCCcCHHHH
Confidence 455555 4789999886553 222 344444556665554 456677777776665555432 2 666554
Q ss_pred HHHH
Q 016648 343 TRTI 346 (385)
Q Consensus 343 ~~~~ 346 (385)
.+++
T Consensus 90 ~~~l 93 (108)
T 3g5o_A 90 RAEF 93 (108)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 4443
No 256
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=26.84 E-value=1.1e+02 Score=24.32 Aligned_cols=19 Identities=16% Similarity=0.120 Sum_probs=15.0
Q ss_pred CcHHHHHHHhcCCcEEEec
Q 016648 263 LGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 263 ~~~~~~Ea~a~G~PvI~s~ 281 (385)
-..+.+.|++.|+|||..+
T Consensus 57 rt~K~~~a~~~g~~IV~~~ 75 (229)
T 1l0b_A 57 RTLKYFLGIAGGKWIVSYS 75 (229)
T ss_dssp CCHHHHHHHHTTCEEEETH
T ss_pred ccHHHHHHHHCCCcEecHH
Confidence 3678889999999988753
No 257
>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*
Probab=26.15 E-value=85 Score=24.94 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=29.5
Q ss_pred HHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCC
Q 016648 242 EELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGG 284 (385)
Q Consensus 242 ~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~ 284 (385)
+++.++++..|+++............-.+..+|+..|..-.+.
T Consensus 137 ~dl~eli~~~D~ViIAvPs~~~~ei~~~l~~aGi~~Ilnf~P~ 179 (215)
T 2vt3_A 137 DDLEQHVKDESVAILTVPAVAAQSITDRLVALGIKGILNFTPA 179 (215)
T ss_dssp GGHHHHCSSCCEEEECSCHHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred hhHHHHHHhCCEEEEecCchhHHHHHHHHHHcCCCEEEEcCce
Confidence 6788888777988876543332345667788999977665543
No 258
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=25.94 E-value=2e+02 Score=22.69 Aligned_cols=71 Identities=15% Similarity=0.184 Sum_probs=31.9
Q ss_pred HHHHHHHhCcEEEEcCCCCCC--cHHHHHHHhcCCcEEEecCCCCCcccccCCCCC----eeE-eeCCCCHHHHHHHHhH
Q 016648 243 ELSQAYASGDVFVMPSESETL--GLVVLEAMSSGIPVVGVRAGGIPDIIPEDQDGK----IGY-LFNPGDLDDCLSKLEP 315 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~~e~~--~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~~~----~g~-~~~~~~~~~l~~~i~~ 315 (385)
++.+.+..-=+-++||.--.+ ...+-.|+..|........--+.+-+ ..|. .-+ +.+.++.+++.+.+..
T Consensus 98 ~~l~~~~~~~iNiHpSLLP~yrG~~pi~~Ai~~G~~~tGvTvh~v~~~~---D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~ 174 (212)
T 3av3_A 98 TLLSAYEGKIVNIHPSLLPAFPGKDAIGQAYRAGVSETGVTVHYVDEGM---DTGPVIAQRVVPIVPGEPIEALEERIHQ 174 (212)
T ss_dssp HHHHHTTTCEEEEESSCTTSSCSTTHHHHHHHHTCSEEEEEEEECCSSS---SCSCEEEEEEEECCTTCCHHHHHHHHHH
T ss_pred HHHhhhcCCEEEEecCcCCCCCCcCHHHHHHHcCCCeEEEEEEEECCCC---CCCCEEEEEEEecCCCCCHHHHHHHHHH
Confidence 343333333344445442111 34566677777666533222122222 1221 112 2334577888777655
Q ss_pred h
Q 016648 316 L 316 (385)
Q Consensus 316 l 316 (385)
+
T Consensus 175 ~ 175 (212)
T 3av3_A 175 V 175 (212)
T ss_dssp H
T ss_pred H
Confidence 4
No 259
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=25.93 E-value=2.3e+02 Score=23.86 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHhhc-cCCCEEEeCCCchhHHHHHHHHHHhCCCEEEEEecCCCcccccccccccchhHHHHHHHHHHh-------
Q 016648 53 PRIISEVAR-FKPDIIHASSPGIMVFGALIIAKLLCVPIVMSYHTHVPVYIPRYTFSWLVKPMWLVIKFLHRA------- 124 (385)
Q Consensus 53 ~~l~~~i~~-~~pDiI~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 124 (385)
..+..++.+ .++|.|++..........+..+...++|+|+.-.... -..
T Consensus 51 ~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~~-----------------------~~~~~~~~~~ 107 (350)
T 3h75_A 51 QQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPLT-----------------------LDQRELIGQS 107 (350)
T ss_dssp HHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCCC-----------------------TTTC------
T ss_pred HHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCCC-----------------------hHHHhhhcCC
Q ss_pred -------CCeEEEcChhHHHHHHHhcccCC------CcEEEeeCCCCCCCCCCCCCChhhHhhhcCCCCCCcEEEEEeec
Q 016648 125 -------ADLTLVPSVAIGKDLEAARVTAA------NKIRIWKKGVDSESFHPRFRSSEMRWRLSNGEPDKPLIVHVGRL 191 (385)
Q Consensus 125 -------ad~ii~~s~~~~~~~~~~~~~~~------~~i~vi~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~ 191 (385)
.+.|.+..........++..... .+-.+..-+-+................+.............+..
T Consensus 108 ~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~~~~~~ 187 (350)
T 3h75_A 108 RQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFSGLKVTPAAQLRERGLRRALAEHPQVHLRQLVYGEW 187 (350)
T ss_dssp ------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEESCTTSHHHHHHHHHHHHHHHHCTTEEEEEEEECTT
T ss_pred chhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHHCCCeEEEEEeeCCC
Q ss_pred cccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCC------CeEEecccChHHHHHHHHhCcEEEEcCCCCCCcH
Q 016648 192 GVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM------PAVFTGMLLGEELSQAYASGDVFVMPSESETLGL 265 (385)
Q Consensus 192 ~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~------~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~ 265 (385)
+..++...+.+.+...+++..+++.+......+.+.+.+. .|.+.|+=........+..-.+.......+..|.
T Consensus 188 ~~~~~~~~~~~~L~~~~~~~aI~~~~d~~a~g~~~al~~~G~~vP~di~vvg~d~~~~~l~~~~~~~lttv~~~~~~~G~ 267 (350)
T 3h75_A 188 NRERAYRQAQQLLKRYPKTQLVWSANDEMALGAMQAARELGRKPGTDLLFSGVNSSPEALQALIDGKLSVLEAGHFTLGG 267 (350)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEESCCHHHHHHHHHTSSCEEEECGGGHHH
T ss_pred cHHHHHHHHHHHHHhCCCcCEEEECChHHHHHHHHHHHHcCCCCCCCeEEEecCCCHHHHHHHHcCCeeEEEcCchhhHH
Q ss_pred HHHHHHh
Q 016648 266 VVLEAMS 272 (385)
Q Consensus 266 ~~~Ea~a 272 (385)
..++.+.
T Consensus 268 ~av~~l~ 274 (350)
T 3h75_A 268 WALVALH 274 (350)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 260
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=25.51 E-value=99 Score=28.10 Aligned_cols=94 Identities=10% Similarity=-0.065 Sum_probs=55.4
Q ss_pred CCcEEEEEeeccc-cccHHHHHHHHHhC-CCceEEEEeCCccHHHHHHHHcCCCe---EEecccChHHHHHHHH--hCcE
Q 016648 181 DKPLIVHVGRLGV-EKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPA---VFTGMLLGEELSQAYA--SGDV 253 (385)
Q Consensus 181 ~~~~i~~~G~~~~-~k~~~~l~~a~~~~-~~~~l~i~G~g~~~~~l~~~~~~~~i---~~~g~~~~~~~~~~~~--~adi 253 (385)
++..++.+|--.. ..--...++++... ++++++-+.+. ..+..++...+.++ ... .++.++++ ..|+
T Consensus 38 ~~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~-~~~~a~~~a~~~g~~~~~~~-----~d~~ell~~~~vD~ 111 (479)
T 2nvw_A 38 RPIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNP-TLKSSLQTIEQLQLKHATGF-----DSLESFAQYKDIDM 111 (479)
T ss_dssp CCEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECS-CHHHHHHHHHHTTCTTCEEE-----SCHHHHHHCTTCSE
T ss_pred CcCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeC-CHHHHHHHHHHcCCCcceee-----CCHHHHhcCCCCCE
Confidence 3467888885210 11113456677777 78887655543 23344444443332 222 45566676 5899
Q ss_pred EEEcCCCCCCcHHHHHHHhcC------CcEEEe
Q 016648 254 FVMPSESETLGLVVLEAMSSG------IPVVGV 280 (385)
Q Consensus 254 ~v~ps~~e~~~~~~~Ea~a~G------~PvI~s 280 (385)
++..+....-.-.+.+|+..| ++|++-
T Consensus 112 V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~E 144 (479)
T 2nvw_A 112 IVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVE 144 (479)
T ss_dssp EEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEE
T ss_pred EEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEe
Confidence 888775444445577899999 999974
No 261
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=25.35 E-value=1.7e+02 Score=20.29 Aligned_cols=107 Identities=12% Similarity=0.067 Sum_probs=56.6
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCCC-CCCcHHHHHHHh---cCCcEEE-ecC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSES-ETLGLVVLEAMS---SGIPVVG-VRA 282 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~~-e~~~~~~~Ea~a---~G~PvI~-s~~ 282 (385)
+++++.+.+. ...+....... ..+...-+.++....+.. .|++++-... +.-|..+++.+. ...|+|. |..
T Consensus 3 ~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~ 81 (139)
T 2jk1_A 3 AILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEWVQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGY 81 (139)
T ss_dssp EEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSCEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESC
T ss_pred eEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCC
Confidence 4556665443 23344444332 222223333566665554 4777664332 233555665553 3567664 333
Q ss_pred CCCCcccccCCC-CCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 283 GGIPDIIPEDQD-GKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 283 ~~~~e~~~~~~~-~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
............ |..+++..|.+.+++..++..++.
T Consensus 82 ~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 118 (139)
T 2jk1_A 82 TDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAAR 118 (139)
T ss_dssp TTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHH
Confidence 332221110022 457899999999999999988764
No 262
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=25.32 E-value=1.6e+02 Score=19.78 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=46.2
Q ss_pred EEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCC--eEEecccChHHHHHHHHhCcEEEEcCCCC
Q 016648 184 LIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMP--AVFTGMLLGEELSQAYASGDVFVMPSESE 261 (385)
Q Consensus 184 ~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~--i~~~g~~~~~~~~~~~~~adi~v~ps~~e 261 (385)
.++.+|. +. =|. .+.+.+......++.+++..+ +.++... ..+ .......+.+++.+.+..+|+++......
T Consensus 7 ~v~I~G~-G~-iG~-~~~~~l~~~g~~~v~~~~r~~--~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~ 80 (118)
T 3ic5_A 7 NICVVGA-GK-IGQ-MIAALLKTSSNYSVTVADHDL--AALAVLN-RMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF 80 (118)
T ss_dssp EEEEECC-SH-HHH-HHHHHHHHCSSEEEEEEESCH--HHHHHHH-TTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG
T ss_pred eEEEECC-CH-HHH-HHHHHHHhCCCceEEEEeCCH--HHHHHHH-hCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch
Confidence 4566665 22 233 334444443336777776543 3333333 223 33333334467888899999999766322
Q ss_pred CCcHHHHHHHhcCCcEE
Q 016648 262 TLGLVVLEAMSSGIPVV 278 (385)
Q Consensus 262 ~~~~~~~Ea~a~G~PvI 278 (385)
.....+-.+...|++.+
T Consensus 81 ~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 81 LTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp GHHHHHHHHHHTTCEEE
T ss_pred hhHHHHHHHHHhCCCEE
Confidence 22233344455666655
No 263
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=25.27 E-value=57 Score=25.99 Aligned_cols=62 Identities=15% Similarity=0.059 Sum_probs=36.0
Q ss_pred CceEEEEeCCc-cHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEec
Q 016648 209 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 209 ~~~l~i~G~g~-~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~ 281 (385)
+.++.+.|-.+ ..+.+.+.+...+..+... ...+.-+|.+.. .-..+.+.|++.|+|||..+
T Consensus 16 ~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~---------~~~~THLI~~~~--~rT~K~l~A~~~g~~IVs~~ 78 (219)
T 3sqd_A 16 TPFVLFTGFEPVQVQQYIKKLYILGGEVAES---------AQKCTHLIASKV--TRTVKFLTAISVVKHIVTPE 78 (219)
T ss_dssp CCEEEECSCCHHHHHHHHHHHHHTTCEECSS---------GGGCSEEECSSC--CCCHHHHHHTTTCSEEECHH
T ss_pred CeEEEEeCCChHHHHHHHHHHHHCCCEEeCC---------CCCceEEEECCC--CCCHHHHHHHHcCCCEecHH
Confidence 34555555222 2234555555554444322 156777776642 12368999999999999764
No 264
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=25.22 E-value=2.9e+02 Score=22.82 Aligned_cols=90 Identities=13% Similarity=0.053 Sum_probs=50.8
Q ss_pred HHHHHHHhCcEEEEcCC-CCCCcHHHHHHHhcCCcEEEecCCCCCcccccCCC----CCeeEeeCCCCHHHHHHHHhHhh
Q 016648 243 ELSQAYASGDVFVMPSE-SETLGLVVLEAMSSGIPVVGVRAGGIPDIIPEDQD----GKIGYLFNPGDLDDCLSKLEPLL 317 (385)
Q Consensus 243 ~~~~~~~~adi~v~ps~-~e~~~~~~~Ea~a~G~PvI~s~~~~~~e~~~~~~~----~~~g~~~~~~~~~~l~~~i~~ll 317 (385)
.-..-+++||++|.-.. .|++-..+++.. + +-.+..-...++.....+ .+.-+..++.+...+++.|.+.|
T Consensus 48 ~d~~~l~~Adlvv~nG~~lE~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~dPHvWldp~~~~~~a~~I~~~L 123 (282)
T 3mfq_A 48 SDLSKLQKADLVLYHGLHFEGKMVEALEKT--G--VAVSKNFNAKDLNTMDEDGEEIVDPHFWFSIPLYKSAVAVASEEL 123 (282)
T ss_dssp HHHHHHHHCSEEEECCTTSSSSCHHHHHHH--C--EETTTTCCGGGCCEECSSSSCEECCCGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEcCcchHHHHHHHHHhc--C--cchhhccCcccccccccCCCCCCCCCccCCHHHHHHHHHHHHHHH
Confidence 34566889999997653 677777777764 2 111111000011100001 12234556667778888888877
Q ss_pred c--CHHHHHHHHHHHHHHHHh
Q 016648 318 Y--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 318 ~--~~~~~~~~~~~a~~~~~~ 336 (385)
. ||+......+|+..+.++
T Consensus 124 ~~~dP~~a~~y~~N~~~~~~~ 144 (282)
T 3mfq_A 124 QKLLPAKAEMIQKNTEKYQAQ 144 (282)
T ss_dssp TTTCGGGHHHHHHHHHHHHHH
T ss_pred HHhChhhHHHHHHHHHHHHHH
Confidence 5 777777777777666543
No 265
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=25.11 E-value=2.1e+02 Score=21.17 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=37.9
Q ss_pred HhCc-EEEEcCCCCCCcHHHHHHH----hcCCcEEEecCCC--CCc------ccccCCCCCeeEeeCCCCHHHHHHHHhH
Q 016648 249 ASGD-VFVMPSESETLGLVVLEAM----SSGIPVVGVRAGG--IPD------IIPEDQDGKIGYLFNPGDLDDCLSKLEP 315 (385)
Q Consensus 249 ~~ad-i~v~ps~~e~~~~~~~Ea~----a~G~PvI~s~~~~--~~e------~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 315 (385)
...| +++.|.-+.-.+..+.+|+ +.++|+|=-..+. .+| ++ .+...|.++.. -.+...-+++.
T Consensus 69 ~~~dgiiINpgA~THtSvAlrDAl~~l~~~~~P~VEVHiSNi~aRE~FRh~S~~---s~~a~G~I~G~-G~~gY~lAl~~ 144 (151)
T 3u80_A 69 DEKTPVVMNPAAFTHYSYALADAAHMVIDENLPLMEVHISNPSARDEFRKRSVI---SPVATGTITGM-GFYGYKLALDA 144 (151)
T ss_dssp HHTCCEEEECTTCCSCCHHHHHHHHHHHHTTCCEEEEESSCCC---------CS---CCCCSEEEESS-TTHHHHHHHHH
T ss_pred hcCcEEEECcchhhhhhHHHHHHHHHHhhcCCCEEEEEcCCcccccchhhcccc---cccceEEEEec-ChHHHHHHHHH
Confidence 3345 5777887888899999994 3599999433222 223 33 33445666554 44555555554
Q ss_pred h
Q 016648 316 L 316 (385)
Q Consensus 316 l 316 (385)
+
T Consensus 145 ~ 145 (151)
T 3u80_A 145 V 145 (151)
T ss_dssp H
T ss_pred H
Confidence 4
No 266
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=24.98 E-value=28 Score=29.45 Aligned_cols=86 Identities=21% Similarity=0.214 Sum_probs=47.1
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEE-EEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIA-FIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSES 260 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~-i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~ 260 (385)
+..+..+|.-.- |- .+++++.+.++++++ +++..+. ..+. .++. +...+++.+. ..+|+++..+..
T Consensus 9 ~irv~IIG~G~i--G~-~~~~~l~~~~~~elvav~d~~~~--~~~~----~g~~---~~~~~~l~~~-~~~DvViiatp~ 75 (304)
T 3bio_A 9 KIRAAIVGYGNI--GR-YALQALREAPDFEIAGIVRRNPA--EVPF----ELQP---FRVVSDIEQL-ESVDVALVCSPS 75 (304)
T ss_dssp CEEEEEECCSHH--HH-HHHHHHHHCTTEEEEEEECC-------------CCTT---SCEESSGGGS-SSCCEEEECSCH
T ss_pred CCEEEEECChHH--HH-HHHHHHhcCCCCEEEEEEcCCHH--HHHH----cCCC---cCCHHHHHhC-CCCCEEEECCCc
Confidence 456777774221 22 356777777888877 4443322 2222 2221 1112444444 688999877653
Q ss_pred CCCcHHHHHHHhcCCcEEEe
Q 016648 261 ETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 261 e~~~~~~~Ea~a~G~PvI~s 280 (385)
....-.+.+++..|++||+.
T Consensus 76 ~~h~~~~~~al~aG~~Vi~e 95 (304)
T 3bio_A 76 REVERTALEILKKGICTADS 95 (304)
T ss_dssp HHHHHHHHHHHTTTCEEEEC
T ss_pred hhhHHHHHHHHHcCCeEEEC
Confidence 33344567899999999964
No 267
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=24.94 E-value=2.9e+02 Score=23.20 Aligned_cols=91 Identities=11% Similarity=-0.072 Sum_probs=51.0
Q ss_pred cEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCC-CeEEecccChHHHHHHH--------HhCcE
Q 016648 183 PLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGM-PAVFTGMLLGEELSQAY--------ASGDV 253 (385)
Q Consensus 183 ~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~-~i~~~g~~~~~~~~~~~--------~~adi 253 (385)
..++.+|--+.. -...++++... +.+++-+.+..... ....... ...+.... +++.+++ ...|+
T Consensus 4 irvgiIG~gG~i--~~~h~~~l~~~-~~~lvav~d~~~~~--~~~~~~~~~~~~~~~~--~~ll~~~~~l~~~~~~~vD~ 76 (318)
T 3oa2_A 4 KNFALIGAAGYI--APRHMRAIKDT-GNCLVSAYDINDSV--GIIDSISPQSEFFTEF--EFFLDHASNLKRDSATALDY 76 (318)
T ss_dssp CEEEEETTTSSS--HHHHHHHHHHT-TCEEEEEECSSCCC--GGGGGTCTTCEEESSH--HHHHHHHHHHTTSTTTSCCE
T ss_pred eEEEEECCCcHH--HHHHHHHHHhC-CCEEEEEEcCCHHH--HHHHhhCCCCcEECCH--HHHHHhhhhhhhccCCCCcE
Confidence 457777752110 13455666665 56666555432211 1222222 34444433 6665432 45788
Q ss_pred EEEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 254 FVMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 254 ~v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
++..+....-.-.+.+|+.+|++|++-
T Consensus 77 V~I~tP~~~H~~~~~~al~aGkhVl~E 103 (318)
T 3oa2_A 77 VSICSPNYLHYPHIAAGLRLGCDVICE 103 (318)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEEC
T ss_pred EEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 888776555566688999999999963
No 268
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=24.73 E-value=3e+02 Score=22.83 Aligned_cols=38 Identities=8% Similarity=0.098 Sum_probs=23.7
Q ss_pred EeeCCCCHHHHHHHHhHhhc--CHHHHHHHHHHHHHHHHh
Q 016648 299 YLFNPGDLDDCLSKLEPLLY--NQELRETMGQAARQEMEK 336 (385)
Q Consensus 299 ~~~~~~~~~~l~~~i~~ll~--~~~~~~~~~~~a~~~~~~ 336 (385)
+..++.+...+++.|.+.|. ||+....+.+|+..+.++
T Consensus 134 ~Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~ 173 (291)
T 1pq4_A 134 IWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAE 173 (291)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 44555566667777776665 676666666666655433
No 269
>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} SCOP: a.69.3.1 c.2.1.3 d.81.1.3 PDB: 1q0l_A* 1q0h_A* 3r0i_A* 1k5h_A 1onn_A 1ono_A 1onp_A* 1jvs_A* 1t1r_A* 1t1s_A* 2egh_A* 3anm_A* 3anl_A* 3ann_A* 3iie_A
Probab=24.23 E-value=3.7e+02 Score=23.66 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=55.9
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHH--cCCCeEE-ecccChHHHHHHHH--hCcEEE
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMF--TGMPAVF-TGMLLGEELSQAYA--SGDVFV 255 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~--~~~~i~~-~g~~~~~~~~~~~~--~adi~v 255 (385)
+++.++-... .++++.+.+.++++. .+++.+.+....+.++... ...++.+ .|. +.+.++.. .+|+++
T Consensus 34 d~f~V~aL~a---g~nv~~L~~q~~~f~-p~~v~v~d~~~~~~L~~~l~~~~~~~~v~~G~---~~l~~~a~~~~~D~Vv 106 (406)
T 1q0q_A 34 EHFRVVALVA---GKNVTRMVEQCLEFS-PRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQ---QAACDMAALEDVDQVM 106 (406)
T ss_dssp TTEEEEEEEE---SSCHHHHHHHHHHHC-CSEEEESSHHHHHHHHHHHHHTTCCCEEEESH---HHHHHHHTCTTCCEEE
T ss_pred CccEEEEEEc---CCCHHHHHHHHHHhC-CCEEEEcCHHHHHHHHHHhhcCCCCcEEEeCH---HHHHHHhcCCCCCEEE
Confidence 4554443332 588999998888874 2456666555555666554 3334444 333 55666653 578887
Q ss_pred EcCCCCCCcH-HHHHHHhcCCcEEEec
Q 016648 256 MPSESETLGL-VVLEAMSSGIPVVGVR 281 (385)
Q Consensus 256 ~ps~~e~~~~-~~~Ea~a~G~PvI~s~ 281 (385)
..-. ...|+ ..++|+.+|+-+...|
T Consensus 107 ~AIv-G~aGL~PTlaAi~aGK~iaLAN 132 (406)
T 1q0q_A 107 AAIV-GAAGLLPTLAAIRAGKTILLAN 132 (406)
T ss_dssp ECCS-SGGGHHHHHHHHHTTCEEEECC
T ss_pred Eccc-cHhHHHHHHHHHHCCCeEEEec
Confidence 6543 22233 4678999998887654
No 270
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=23.88 E-value=1.8e+02 Score=25.05 Aligned_cols=91 Identities=15% Similarity=0.112 Sum_probs=49.5
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCC
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE 261 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e 261 (385)
+..|+.+|. +.- | ..+.+.+.+ +..+.+++.. .+.+++........-..--+.+++.++++++|++|...-..
T Consensus 16 ~mkilvlGa-G~v-G-~~~~~~L~~--~~~v~~~~~~--~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 16 HMKVLILGA-GNI-G-RAIAWDLKD--EFDVYIGDVN--NENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp CCEEEEECC-SHH-H-HHHHHHHTT--TSEEEEEESC--HHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred ccEEEEECC-CHH-H-HHHHHHHhc--CCCeEEEEcC--HHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 344666675 221 2 233444433 4566676643 23444432222222223334478899999999999754322
Q ss_pred CCcH-HHHHHHhcCCcEEEe
Q 016648 262 TLGL-VVLEAMSSGIPVVGV 280 (385)
Q Consensus 262 ~~~~-~~~Ea~a~G~PvI~s 280 (385)
++. .+-.|+.+|+.++..
T Consensus 89 -~~~~v~~~~~~~g~~yvD~ 107 (365)
T 3abi_A 89 -LGFKSIKAAIKSKVDMVDV 107 (365)
T ss_dssp -GHHHHHHHHHHHTCEEEEC
T ss_pred -ccchHHHHHHhcCcceEee
Confidence 333 445677889999854
No 271
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=23.67 E-value=1.8e+02 Score=24.00 Aligned_cols=109 Identities=13% Similarity=0.116 Sum_probs=60.2
Q ss_pred CcEEEEEeeccccccHHHHHHHHHhCCCceEEEEeCCccHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCC--
Q 016648 182 KPLIVHVGRLGVEKSLDFLKRVMDRLPEARIAFIGDGPYREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSE-- 259 (385)
Q Consensus 182 ~~~i~~~G~~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~-- 259 (385)
...+..+|.+ + .++.+. + ....+.++=..+. .|..|.++...++..||+++.+..
T Consensus 141 g~kV~vIG~f-P--~i~~~~---~--~~~~l~V~E~~p~---------------~g~~p~~~~~~~lp~~D~viiTgstl 197 (270)
T 3l5o_A 141 GKKVGVVGHF-P--HLESLL---E--PICDLSILEWSPE---------------EGDYPLPASEFILPECDYVYITCASV 197 (270)
T ss_dssp TSEEEEESCC-T--THHHHH---T--TTSEEEEEESSCC---------------TTCEEGGGHHHHGGGCSEEEEETHHH
T ss_pred CCEEEEECCc-h--hHHHHH---h--cCCCEEEEECCCC---------------CCCCChhHHHHhhccCCEEEEEeehh
Confidence 4568888876 3 222222 2 2345666553331 123345667789999999997743
Q ss_pred CCCCcHHHHHHHhcCCcEE--EecCCCCCcccccCCCCCeeEeeCCCCHHHHHHHHhH
Q 016648 260 SETLGLVVLEAMSSGIPVV--GVRAGGIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEP 315 (385)
Q Consensus 260 ~e~~~~~~~Ea~a~G~PvI--~s~~~~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ 315 (385)
..+.=-.++|...-+..|| .+..+-.+++++..-+.-.|..+. |++.+.+.+..
T Consensus 198 vN~Tl~~lL~~~~~a~~vvl~GPStp~~P~lf~~Gv~~laG~~V~--d~~~~~~~i~~ 253 (270)
T 3l5o_A 198 VDKTLPRLLELSRNARRITLVGPGTPLAPVLFEHGLQELSGFMVK--DNARAFRIVAG 253 (270)
T ss_dssp HHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEEEEEEES--CHHHHHHHHTT
T ss_pred hcCCHHHHHhhCCCCCEEEEECCCchhhHHHHhcCcCEEEEEEEc--CHHHHHHHHhc
Confidence 1222224566665565554 334556677772111223566665 78877776653
No 272
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=23.26 E-value=1.7e+02 Score=25.77 Aligned_cols=97 Identities=16% Similarity=0.085 Sum_probs=0.0
Q ss_pred CCCcEEEEEeeccccccHHHHHHHHHhC-CCc--eEEEEe-CCccHHHHHHHHcCCCe-EEecccChHHHHHHHHhCcEE
Q 016648 180 PDKPLIVHVGRLGVEKSLDFLKRVMDRL-PEA--RIAFIG-DGPYREELEKMFTGMPA-VFTGMLLGEELSQAYASGDVF 254 (385)
Q Consensus 180 ~~~~~i~~~G~~~~~k~~~~l~~a~~~~-~~~--~l~i~G-~g~~~~~l~~~~~~~~i-~~~g~~~~~~~~~~~~~adi~ 254 (385)
.++..+..+|.-...+..-..+...... ++. ..-|++ .....+..++..++.++ ...... +++.+- ...|++
T Consensus 24 s~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~--~~ll~~-~~vD~V 100 (412)
T 4gqa_A 24 SARLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDW--RELVND-PQVDVV 100 (412)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSH--HHHHHC-TTCCEE
T ss_pred cccceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCH--HHHhcC-CCCCEE
Q ss_pred EEcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 255 VMPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 255 v~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
+..+....-.-.+.+|+.+|++|++
T Consensus 101 ~I~tp~~~H~~~~~~al~aGkhVl~ 125 (412)
T 4gqa_A 101 DITSPNHLHYTMAMAAIAAGKHVYC 125 (412)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred EECCCcHHHHHHHHHHHHcCCCeEe
No 273
>1yxo_A 4-hydroxythreonine-4-phosphate dehydrogenase 1; PA0593,pyridoxine biosynthesis,oxidoreductase, structural GE PSI; 2.01A {Pseudomonas aeruginosa}
Probab=23.03 E-value=2.5e+02 Score=23.91 Aligned_cols=75 Identities=24% Similarity=0.274 Sum_probs=49.1
Q ss_pred CCCeEEecccChHHHH--HHHHhCcEEEEcCCCCCCcHHHHHHHhc--------CCcEEEe--cCCCCCcccccCCCCCe
Q 016648 230 GMPAVFTGMLLGEELS--QAYASGDVFVMPSESETLGLVVLEAMSS--------GIPVVGV--RAGGIPDIIPEDQDGKI 297 (385)
Q Consensus 230 ~~~i~~~g~~~~~~~~--~~~~~adi~v~ps~~e~~~~~~~Ea~a~--------G~PvI~s--~~~~~~e~~~~~~~~~~ 297 (385)
..++...|++|.+.+. ..+...|++|.-+. -.|+..+-++.. |+|+|-| |.|..-++. | .
T Consensus 234 ~~Gi~~~GP~paDT~F~~~~~~~~D~vlaMYH--DQGlip~K~l~F~~gVNvTlGLP~iRTSvDHGTAfDIA-----G-k 305 (328)
T 1yxo_A 234 GEGLDLIGPLPADTLFTPKHLEHCDAVLAMYH--DQGLPVLKYKGFGAAVNVTLGLPIIRTSVDHGTALDLA-----G-S 305 (328)
T ss_dssp TTTCEEEEEECHHHHTSHHHHTTCSEEEESSH--HHHHHHHHHHHTTSCEEEEESSSSCEEEECSCCCGGGT-----T-T
T ss_pred HCCCceeCCCCchhhcccccccCCCEEEEccc--ccccHhHhhcccCcceEEecCCCEEEecCCCCcccccc-----C-C
Confidence 3479999999998753 55778899986554 234444444444 7787733 566666665 2 2
Q ss_pred eEeeCCCCHHHHHHHHhHh
Q 016648 298 GYLFNPGDLDDCLSKLEPL 316 (385)
Q Consensus 298 g~~~~~~~~~~l~~~i~~l 316 (385)
|. -|+.++.++|...
T Consensus 306 G~----A~~~Sl~~Ai~~A 320 (328)
T 1yxo_A 306 GR----IDSGSLQVALETA 320 (328)
T ss_dssp CC----CCCHHHHHHHHHH
T ss_pred CC----CChHHHHHHHHHH
Confidence 21 2778898888755
No 274
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=22.73 E-value=99 Score=26.76 Aligned_cols=95 Identities=11% Similarity=-0.008 Sum_probs=0.0
Q ss_pred CCcEEEEEeeccccccHHHHHHHHHhC--CCceEEEEe-CCccHHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEE
Q 016648 181 DKPLIVHVGRLGVEKSLDFLKRVMDRL--PEARIAFIG-DGPYREELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFV 255 (385)
Q Consensus 181 ~~~~i~~~G~~~~~k~~~~l~~a~~~~--~~~~l~i~G-~g~~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v 255 (385)
.++.++.+|--...+..-..+..+..+ -.....+++ .....+..++...+.++.-. ..++.++++. .|+++
T Consensus 5 ~klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~----~~d~~~ll~~~~iDaV~ 80 (390)
T 4h3v_A 5 TNLGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTT----ETDWRTLLERDDVQLVD 80 (390)
T ss_dssp CEEEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEE----ESCHHHHTTCTTCSEEE
T ss_pred CcCcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcc----cCCHHHHhcCCCCCEEE
Q ss_pred EcCCCCCCcHHHHHHHhcCCcEEE
Q 016648 256 MPSESETLGLVVLEAMSSGIPVVG 279 (385)
Q Consensus 256 ~ps~~e~~~~~~~Ea~a~G~PvI~ 279 (385)
..+....-.-.+.+|+.+|++|++
T Consensus 81 I~tP~~~H~~~~~~al~aGkhVl~ 104 (390)
T 4h3v_A 81 VCTPGDSHAEIAIAALEAGKHVLC 104 (390)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEE
T ss_pred EeCChHHHHHHHHHHHHcCCCcee
No 275
>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A
Probab=22.71 E-value=85 Score=28.09 Aligned_cols=90 Identities=12% Similarity=-0.053 Sum_probs=54.0
Q ss_pred CcEEEEEee----ccccccHHHHHHHHHhC-CCceEEEEeCCccHHHHHHHHcCCCe---EEecccChHHHHHHHH--hC
Q 016648 182 KPLIVHVGR----LGVEKSLDFLKRVMDRL-PEARIAFIGDGPYREELEKMFTGMPA---VFTGMLLGEELSQAYA--SG 251 (385)
Q Consensus 182 ~~~i~~~G~----~~~~k~~~~l~~a~~~~-~~~~l~i~G~g~~~~~l~~~~~~~~i---~~~g~~~~~~~~~~~~--~a 251 (385)
+..++.+|- -.-.+ ..++++.+. ++++++-+.+. ..+..++.....++ ... .++.++++ ..
T Consensus 20 ~irvgiIG~g~~gG~~g~---~~~~~l~~~~~~~~lvav~d~-~~~~~~~~a~~~g~~~~~~~-----~~~~~ll~~~~v 90 (438)
T 3btv_A 20 PIRVGFVGLNAAKGWAIK---THYPAILQLSSQFQITALYSP-KIETSIATIQRLKLSNATAF-----PTLESFASSSTI 90 (438)
T ss_dssp CEEEEEESCCTTSSSTTT---THHHHHHHTTTTEEEEEEECS-SHHHHHHHHHHTTCTTCEEE-----SSHHHHHHCSSC
T ss_pred CCEEEEEcccCCCChHHH---HHHHHHHhcCCCeEEEEEEeC-CHHHHHHHHHHcCCCcceee-----CCHHHHhcCCCC
Confidence 456888875 22122 345666677 78877655543 23334444443332 121 45566676 58
Q ss_pred cEEEEcCCCCCCcHHHHHHHhcC------CcEEEe
Q 016648 252 DVFVMPSESETLGLVVLEAMSSG------IPVVGV 280 (385)
Q Consensus 252 di~v~ps~~e~~~~~~~Ea~a~G------~PvI~s 280 (385)
|+++..+....-.-.+.+|+..| ++|++-
T Consensus 91 D~V~i~tp~~~H~~~~~~al~aG~~~~~~khVl~E 125 (438)
T 3btv_A 91 DMIVIAIQVASHYEVVMPLLEFSKNNPNLKYLFVE 125 (438)
T ss_dssp SEEEECSCHHHHHHHHHHHHHHGGGCTTCCEEEEE
T ss_pred CEEEEeCCcHHHHHHHHHHHHCCCCcccceeEEec
Confidence 99888765444445577899999 999975
No 276
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=22.42 E-value=2.6e+02 Score=21.32 Aligned_cols=106 Identities=21% Similarity=0.260 Sum_probs=62.5
Q ss_pred ceEEEEeCCcc-HHHHHHHHcCC-CeEEecc-cChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHhc---CCcEEEe
Q 016648 210 ARIAFIGDGPY-REELEKMFTGM-PAVFTGM-LLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMSS---GIPVVGV 280 (385)
Q Consensus 210 ~~l~i~G~g~~-~~~l~~~~~~~-~i~~~g~-~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a~---G~PvI~s 280 (385)
.+++++.+.+. ...+....... ++...+. -+.++....+.. .|++++-.. .+.-|..+++.+.. .+|+|.-
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 85 (215)
T 1a04_A 6 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVF 85 (215)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHCCSEEEEETTSTTSCHHHHHHHHHHSCCCSEEEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 45666665543 33444545443 3444332 233555555543 588776543 23346667766643 5677643
Q ss_pred -cCCCC---CcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 281 -RAGGI---PDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 281 -~~~~~---~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
..... .+.+ ..|..+++..|.+.+++.+++..++.
T Consensus 86 s~~~~~~~~~~~~---~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 124 (215)
T 1a04_A 86 SVSNHEEDVVTAL---KRGADGYLLKDMEPEDLLKALHQAAA 124 (215)
T ss_dssp ECCCCHHHHHHHH---HTTCSEEEETTCCHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHH---HcCCcEEEeCCCCHHHHHHHHHHHHc
Confidence 33322 2233 56778999999999999999988875
No 277
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.84 E-value=55 Score=27.09 Aligned_cols=24 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred eeCCCCHHHHHHHHhHhhcCHHHH
Q 016648 300 LFNPGDLDDCLSKLEPLLYNQELR 323 (385)
Q Consensus 300 ~~~~~~~~~l~~~i~~ll~~~~~~ 323 (385)
=++|..--+|+-+|+--++....|
T Consensus 219 ~~dp~~dpela~alr~s~eee~~r 242 (268)
T 4b4t_W 219 GVDPSMDPELAMALRLSMEEEQQR 242 (268)
T ss_dssp ------------------------
T ss_pred CCCCCCCHHHHHHHHHhHHHHHHH
Confidence 356666667888887766543333
No 278
>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}
Probab=21.38 E-value=86 Score=27.30 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=29.5
Q ss_pred HHHHHHHHh--CcEEEEcCCCCCCcHHHHHHHhcCCcEEEe
Q 016648 242 EELSQAYAS--GDVFVMPSESETLGLVVLEAMSSGIPVVGV 280 (385)
Q Consensus 242 ~~~~~~~~~--adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s 280 (385)
.++.++++. .|+++..+....-.-.+.+|+..|++|++-
T Consensus 73 ~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~al~~Gk~V~~E 113 (383)
T 3oqb_A 73 TDLDAALADKNDTMFFDAATTQARPGLLTQAINAGKHVYCE 113 (383)
T ss_dssp SCHHHHHHCSSCCEEEECSCSSSSHHHHHHHHTTTCEEEEC
T ss_pred CCHHHHhcCCCCCEEEECCCchHHHHHHHHHHHCCCeEEEc
Confidence 455666766 788887766666666788999999999963
No 279
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A*
Probab=21.17 E-value=1.8e+02 Score=24.84 Aligned_cols=74 Identities=8% Similarity=0.089 Sum_probs=46.9
Q ss_pred eEEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCCCCcHHHHHHHhcCCcEEEecCCCCC
Q 016648 211 RIAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESETLGLVVLEAMSSGIPVVGVRAGGIP 286 (385)
Q Consensus 211 ~l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~G~PvI~s~~~~~~ 286 (385)
++++++..++ .+.++++..+.++.+......+++.+.++.+|+++.-+ ...++-.+++++-. +-+|++...|+.
T Consensus 2 ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~d~li~~~-~~~i~~~~l~~~~~-Lk~I~~~~~G~d 76 (334)
T 2pi1_A 2 NVLFTSVPQEDVPFYQEALKDLSLKIYTTDVSKVPENELKKAELISVFV-YDKLTEELLSKMPR-LKLIHTRSVGFD 76 (334)
T ss_dssp EEEECSCCTTHHHHHHHHTTTSEEEECSSCGGGSCHHHHHHCSEEEECT-TSCBCHHHHTTCTT-CCEEEESSSCCT
T ss_pred EEEEEccChhhHHHHHHHhhcCCEEEECCCCcHHHHHHhcCCeEEEEcC-CCCCCHHHHhhCCC-CeEEEECCcccc
Confidence 4555554433 34556665555666654444568889999999988643 34566677776543 777777665554
No 280
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=20.74 E-value=1.3e+02 Score=23.34 Aligned_cols=65 Identities=17% Similarity=0.116 Sum_probs=33.5
Q ss_pred CceEEEEeCCc-cHHHHHHHHcCCCeEEecccChHHHHHHHHhCcEEEEcCCCC---CCcHHHHHHHhcCCcEEEec
Q 016648 209 EARIAFIGDGP-YREELEKMFTGMPAVFTGMLLGEELSQAYASGDVFVMPSESE---TLGLVVLEAMSSGIPVVGVR 281 (385)
Q Consensus 209 ~~~l~i~G~g~-~~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~adi~v~ps~~e---~~~~~~~Ea~a~G~PvI~s~ 281 (385)
++.+.+.|-.+ ..+.+.+++...+..+...++ ..+.-+|.....+ .-..+.+.|++.|++||..+
T Consensus 4 ~~~~~~sg~~~~~~~~l~~~~~~~G~~~~~~~~--------~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~ 72 (214)
T 1t15_A 4 RMSMVVSGLTPEEFMLVYKFARKHHITLTNLIT--------EETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYF 72 (214)
T ss_dssp CCEEEEESCCHHHHHHHHHHHHHHTCEECSSCC--------TTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETH
T ss_pred cEEEEECCCCHHHHHHHHHHHHHhCCEEeCccC--------CCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHH
Confidence 34445555322 233455555444444444332 2333344443221 23678889999999988753
No 281
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...
Probab=20.73 E-value=1e+02 Score=26.11 Aligned_cols=132 Identities=14% Similarity=0.209 Sum_probs=75.0
Q ss_pred HHHHHHHHhCCeEEE--cChhHHHHHHHhcccCCCcEEEeeCCCCCCCCCCCCCChh---hHhhhcCCCCCCcEEEEEee
Q 016648 116 LVIKFLHRAADLTLV--PSVAIGKDLEAARVTAANKIRIWKKGVDSESFHPRFRSSE---MRWRLSNGEPDKPLIVHVGR 190 (385)
Q Consensus 116 ~~~~~~~~~ad~ii~--~s~~~~~~~~~~~~~~~~~i~vi~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~G~ 190 (385)
-..+.+-+.+|.|+. .++...+.+.++.+ .+-|| |+.+-+...|...-.+ ..... +.-+...+.|+|-
T Consensus 90 DTarvls~~~D~iviR~~~~~~~~~la~~~~----~vPVI-Nag~G~~~HPtQaLaDl~Ti~e~~--g~l~gl~va~vGD 162 (310)
T 3csu_A 90 DTISVISTYVDAIVMRHPQEGAARLATEFSG----NVPVL-NAGDGSNQHPTQTLLDLFTIQETQ--GRLDNLHVAMVGD 162 (310)
T ss_dssp HHHHHHTTTCSEEEEEESSTTHHHHHHHHCT----TCCEE-EEEETTSCCHHHHHHHHHHHHHHH--SCSSSCEEEEESC
T ss_pred HHHHHHHHhCCEEEEECCChhHHHHHHHhcC----CCCEE-cCccCCCCCchHHHHHHHHHHHHh--CCcCCcEEEEECC
Confidence 345667778998876 45566666665530 23355 4444233333211111 11111 2225678999997
Q ss_pred ccccccHHHHHHHHHhCCCceEEEEeCCcc--HHHHHHHHcCC--CeEEecccChHHHHHHHHhCcEEEEcCC
Q 016648 191 LGVEKSLDFLKRVMDRLPEARIAFIGDGPY--REELEKMFTGM--PAVFTGMLLGEELSQAYASGDVFVMPSE 259 (385)
Q Consensus 191 ~~~~k~~~~l~~a~~~~~~~~l~i~G~g~~--~~~l~~~~~~~--~i~~~g~~~~~~~~~~~~~adi~v~ps~ 259 (385)
.....-..-++.++..++++++.+++...+ .+.+.+.+++. .+.+. +++.+.++.||++.....
T Consensus 163 ~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~-----~d~~eav~~aDvvyt~~~ 230 (310)
T 3csu_A 163 LKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLH-----SSIEEVMAEVDILYMTRV 230 (310)
T ss_dssp TTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEC-----SCGGGTTTTCSEEEECC-
T ss_pred CCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEE-----cCHHHHhcCCCEEEECCc
Confidence 644455778888999998899999995432 12233333222 23332 345566899999887654
No 282
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=20.32 E-value=76 Score=23.55 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=25.2
Q ss_pred CHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHhC
Q 016648 305 DLDDCLSKLEPLLYNQELRETMGQAARQEMEKY 337 (385)
Q Consensus 305 ~~~~l~~~i~~ll~~~~~~~~~~~~a~~~~~~~ 337 (385)
++..-++.|..+++|++..++-+++|++...+|
T Consensus 115 ~VR~kak~l~~LL~D~e~L~~eR~ka~~~~~k~ 147 (150)
T 3onk_A 115 NVRTRVKALIELLSDDNKIRAERKKARETAKKY 147 (150)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhh
Confidence 677889999999999998888888887765554
No 283
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=20.01 E-value=2.4e+02 Score=24.39 Aligned_cols=107 Identities=11% Similarity=0.104 Sum_probs=57.2
Q ss_pred EEEEeCCcc-HHHHHHHHcCCCeEEecccChHHHHHHHHh--CcEEEEcCC-CCCCcHHHHHHHh---cCCcEEE-ecCC
Q 016648 212 IAFIGDGPY-REELEKMFTGMPAVFTGMLLGEELSQAYAS--GDVFVMPSE-SETLGLVVLEAMS---SGIPVVG-VRAG 283 (385)
Q Consensus 212 l~i~G~g~~-~~~l~~~~~~~~i~~~g~~~~~~~~~~~~~--adi~v~ps~-~e~~~~~~~Ea~a---~G~PvI~-s~~~ 283 (385)
++|+-+.+. ...+.......+......-+.++..+.+.. .|++++-.. .+.-|..+++.+. ..+|||. |..+
T Consensus 3 ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT~~~ 82 (368)
T 3dzd_A 3 VLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELFFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVITGHG 82 (368)
T ss_dssp EEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBCCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEECSS
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEeCCC
Confidence 444444332 233444443333333333344565555554 467665322 2223444555443 4677774 4333
Q ss_pred CCCcccccCCCCCeeEeeCCCCHHHHHHHHhHhhc
Q 016648 284 GIPDIIPEDQDGKIGYLFNPGDLDDCLSKLEPLLY 318 (385)
Q Consensus 284 ~~~e~~~~~~~~~~g~~~~~~~~~~l~~~i~~ll~ 318 (385)
.........+.|..+++..|-+.+++...|.+++.
T Consensus 83 ~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 117 (368)
T 3dzd_A 83 SVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFE 117 (368)
T ss_dssp CCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 32222111145778899999999999999988764
Done!