BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016649
(385 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U02|A Chain A, Crystal Structure Of Trehalose-6-Phosphate Phosphatase
Related Protein
Length = 239
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 34/218 (15%)
Query: 121 LFLDYDGTLSPIVDNPDCAFMSDAMRAVVKNVAKYFPTAIISGRSRDKVYEFVGLAELYY 180
+FLDYDGTL PI+ NP+ ++ + +++ ++ + F T I++GRS +++ F+ L ++
Sbjct: 4 IFLDYDGTLVPIIXNPEESYADAGLLSLISDLKERFDTYIVTGRSPEEISRFLPL-DINX 62
Query: 181 AGSHGMDIMGPVRQSIPNDNADTIQSTGKQGKEVNLFQPAREFLPMIDAVFHSLMENTKE 240
HG + N + + G FL + D ++ +
Sbjct: 63 ICYHG---------ACSKINGQIVYNNGSD-----------RFLGVFDRIYEDTRSWVSD 102
Query: 241 INGVKVENNKFCVSVHYRNVDEKYWATVVQRVHEILKQYPTRLRLTHGRKVLEVRPVIDW 300
G+++ V H + R+ EI + + + +G+ ++E+R V
Sbjct: 103 FPGLRIYRKNLAVLYHLGLXGADXKPKLRSRIEEIARIFG--VETYYGKXIIELR-VPGV 159
Query: 301 DKGKAVMFLLESLGLNNCEDVLP-IYVGDDRTDEDAFK 337
+KG A+ + P I GDD TDE AF+
Sbjct: 160 NKGSAI---------RSVRGERPAIIAGDDATDEAAFE 188
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 45 AIPRKKTGVLDDVRACSWLDAMKSSSPPPKWMAKE----SNNEFSS------TDTDVAYR 94
+P V+D + A + + A+K SP + + E N FSS TD V
Sbjct: 277 GVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDERHADDNEPFSSLAFKIATDPFVGTL 336
Query: 95 TWQRQYPSALTSFEQILKSAKGKR 118
T+ R Y L+S + +L S KGK+
Sbjct: 337 TFARVYSGVLSSGDSVLNSVKGKK 360
>pdb|2B30|A Chain A, Initial Crystallographic Structural Analysis Of A Putative
HadCOF-Like Hydrolase From Plasmodium Vivax
pdb|2B30|B Chain B, Initial Crystallographic Structural Analysis Of A Putative
HadCOF-Like Hydrolase From Plasmodium Vivax
pdb|2B30|C Chain C, Initial Crystallographic Structural Analysis Of A Putative
HadCOF-Like Hydrolase From Plasmodium Vivax
pdb|2B30|D Chain D, Initial Crystallographic Structural Analysis Of A Putative
HadCOF-Like Hydrolase From Plasmodium Vivax
Length = 301
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 8/88 (9%)
Query: 108 EQILKSAKGKRIALFLDYDGTLSPIVDNPDCAFMSDAMRAVVKNVAKYFPTAIISGRSRD 167
E+ LK A K L +D+DGTL VD D S+ + A+ + + K + +I +GRS+
Sbjct: 19 EEALKGADIK--LLLIDFDGTL--FVD-KDIKVPSENIDAIKEAIEKGYMVSICTGRSKV 73
Query: 168 KVYEFVG---LAELYYAGSHGMDIMGPV 192
+ G L ++ + G G+ I G +
Sbjct: 74 GILSAFGEENLKKMNFYGMPGVYINGTI 101
>pdb|2PFF|B Chain B, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|E Chain E, Structural Insights Of Yeast Fatty Acid Synthase
pdb|2PFF|H Chain H, Structural Insights Of Yeast Fatty Acid Synthase
Length = 2006
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 267 TVVQRVHEILKQYPTRLRLTHGRKVLEVRPVIDWDKGKAVMFLLESLGLNNCEDVLPIYV 326
T + + E++K Y T +++ RP +DK K+ L ++G N + ++ I+
Sbjct: 114 TTLVKTKELIKNYITA-------RIMAKRP---FDK-KSNSALFRAVGEGNAQ-LVAIFG 161
Query: 327 GDDRTDEDAFKELREGNHGYGILVSSVPKES 357
G TD D F+ELR+ Y +LV + K S
Sbjct: 162 GQGNTD-DYFEELRDLYQTYHVLVGDLIKFS 191
>pdb|2VKZ|G Chain G, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|H Chain H, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|2VKZ|I Chain I, Structure Of The Cerulenin-Inhibited Fungal Fatty Acid
Synthase Type I Multienzyme Complex
pdb|3HMJ|G Chain G, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|H Chain H, Saccharomyces Cerevisiae Fas Type I
pdb|3HMJ|I Chain I, Saccharomyces Cerevisiae Fas Type I
pdb|2UV8|G Chain G, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|H Chain H, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
pdb|2UV8|I Chain I, Crystal Structure Of Yeast Fatty Acid Synthase With
Stalled Acyl Carrier Protein At 3.1 Angstrom Resolution
Length = 2051
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 13/91 (14%)
Query: 267 TVVQRVHEILKQYPTRLRLTHGRKVLEVRPVIDWDKGKAVMFLLESLGLNNCEDVLPIYV 326
T + + E++K Y T +++ RP +DK K+ L ++G N + ++ I+
Sbjct: 114 TTLVKTKELIKNYITA-------RIMAKRP---FDK-KSNSALFRAVGEGNAQ-LVAIFG 161
Query: 327 GDDRTDEDAFKELREGNHGYGILVSSVPKES 357
G TD D F+ELR+ Y +LV + K S
Sbjct: 162 GQGNTD-DYFEELRDLYQTYHVLVGDLIKFS 191
>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
pdb|3HAJ|B Chain B, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121
Lattice)
Length = 486
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 55 DDVRACSWLDAMKSSSPPPKWMAKESNNEFSSTDTD 90
DD +A + K+ S P W ESNN FSSTD +
Sbjct: 378 DDTKAKNVSSYEKTQSYPTDWSDDESNNPFSSTDAN 413
>pdb|3BYJ|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant D86a
Length = 473
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 312 SLGLNNCEDVLPIYVGDDRTDEDAFKELREGNHGYGILVSSVPKESKAFYSLRDPSEV 369
SL +N ED I+ GD +T ++ + + EGN+ G ++LRDP V
Sbjct: 205 SLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSG-----------DNHTLRDPHYV 251
>pdb|3BYL|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant E342a
pdb|3BYN|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant E342a
Bound To Raffinose
Length = 473
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 312 SLGLNNCEDVLPIYVGDDRTDEDAFKELREGNHGYGILVSSVPKESKAFYSLRDPSEV 369
SL +N ED I+ GD +T ++ + + EGN+ G ++LRDP V
Sbjct: 205 SLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSG-----------DNHTLRDPHYV 251
>pdb|1PT2|A Chain A, Crystal Structure Of Levansucrase (E342a) Complexed With
Sucrose
Length = 447
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 312 SLGLNNCEDVLPIYVGDDRTDEDAFKELREGNHGYGILVSSVPKESKAFYSLRDPSEVME 371
SL +N ED I+ GD +T ++ + + EGN+ G ++LRDP V +
Sbjct: 179 SLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSG-----------DNHTLRDPHYVED 227
Query: 372 FLKSFVMWKQSSA 384
+++++ ++
Sbjct: 228 KGHKYLVFEANTG 240
>pdb|2VDT|A Chain A, Crystallographic Structure Of Levansucrase From Bacillus
Subtilis Mutant S164a
Length = 439
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 312 SLGLNNCEDVLPIYVGDDRTDEDAFKELREGNHGYGILVSSVPKESKAFYSLRDPSEVME 371
SL +N ED I+ GD +T ++ + + EGN+ G ++LRDP V +
Sbjct: 172 SLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSG-----------DNHTLRDPHYVED 220
Query: 372 FLKSFVMWKQSSA 384
+++++ ++
Sbjct: 221 KGHKYLVFEANTG 233
>pdb|1OYG|A Chain A, Crystal Structure Of Bacillus Subtilis Levansucrase
Length = 447
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 312 SLGLNNCEDVLPIYVGDDRTDEDAFKELREGNHGYGILVSSVPKESKAFYSLRDPSEVME 371
SL +N ED I+ GD +T ++ + + EGN+ G ++LRDP V +
Sbjct: 179 SLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSG-----------DNHTLRDPHYVED 227
Query: 372 FLKSFVMWKQSSA 384
+++++ ++
Sbjct: 228 KGHKYLVFEANTG 240
>pdb|3BYK|A Chain A, Crystal Structure Of B. Subtilis Levansucrase Mutant D247a
Length = 473
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 312 SLGLNNCEDVLPIYVGDDRTDEDAFKELREGNHGYG 347
SL +N ED I+ GD +T ++ + + EGN+ G
Sbjct: 205 SLNINGVEDYKSIFDGDGKTYQNVQQFIDEGNYSSG 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,815,558
Number of Sequences: 62578
Number of extensions: 503806
Number of successful extensions: 1184
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 18
length of query: 385
length of database: 14,973,337
effective HSP length: 101
effective length of query: 284
effective length of database: 8,652,959
effective search space: 2457440356
effective search space used: 2457440356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)