Query 016650
Match_columns 385
No_of_seqs 348 out of 1870
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 17:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.8 1.2E-20 4.3E-25 145.1 6.2 60 264-323 2-62 (63)
2 1gcc_A Ethylene responsive ele 99.8 4.3E-20 1.5E-24 142.1 6.1 58 172-230 2-62 (63)
3 3igm_B PF14_0633 protein; AP2 95.4 0.0099 3.4E-07 47.0 3.2 29 168-196 3-31 (77)
4 1u3e_M HNH homing endonuclease 95.2 0.00045 1.6E-08 61.5 -5.7 59 148-211 87-145 (174)
5 3igm_B PF14_0633 protein; AP2 83.1 0.59 2E-05 36.9 2.3 28 260-289 3-31 (77)
6 1u3e_M HNH homing endonuclease 78.7 0.18 6.2E-06 44.5 -2.3 88 210-305 55-146 (174)
7 3eik_A Tata-box-binding protei 78.5 11 0.00039 34.9 9.7 134 171-311 75-212 (218)
8 2z8u_A Tata-box-binding protei 73.8 29 0.00099 31.3 10.9 134 170-311 44-182 (188)
9 1ais_A TBP, protein (tata-bind 68.5 34 0.0012 30.6 10.1 134 170-311 40-178 (182)
10 1mp9_A Tata-binding protein; t 67.6 48 0.0016 30.1 11.0 134 171-312 45-183 (198)
11 1x60_A Sporulation-specific N- 47.8 33 0.0011 25.5 5.4 23 195-217 11-33 (79)
12 1z1b_A Integrase; protein-DNA 47.2 21 0.00072 32.9 5.0 42 266-311 14-55 (356)
13 1z1b_A Integrase; protein-DNA 44.9 24 0.00081 32.6 4.9 42 174-218 14-55 (356)
14 3jtz_A Integrase; four strande 22.0 1.3E+02 0.0044 23.5 4.9 36 183-218 36-75 (88)
15 1ytb_A Protein (tata binding p 21.4 4.2E+02 0.015 23.4 9.0 130 171-309 37-172 (180)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.81 E-value=1.2e-20 Score=145.10 Aligned_cols=60 Identities=33% Similarity=0.582 Sum_probs=55.9
Q ss_pred cccCeEEeecCeEeEEEceec-CceeeecCCCCCHHHHHHHHHHHHHHhcCCCcccCCCCC
Q 016650 264 KYRGVTLHKCGRWEARMGQFL-GKKYIYLGLFDSEVEAARAYDKAAIKCNGREAVTNFEPS 323 (385)
Q Consensus 264 ~yrGV~~~k~gkW~A~I~~~~-~gK~i~LGtFdTeeEAArAYD~Aai~l~G~~A~tNF~~~ 323 (385)
+|+||+++++|||.|+|+.+. +|+++|||+|+|+||||+|||.|+++++|..|++|||.+
T Consensus 2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 699999988999999997654 479999999999999999999999999999999999975
No 2
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.80 E-value=4.3e-20 Score=142.09 Aligned_cols=58 Identities=50% Similarity=0.788 Sum_probs=54.3
Q ss_pred CcccceeecCCCcEEEEEEe---CCeEEeeCCCCCHHHHHHHHHHHHHHccCcccccccccc
Q 016650 172 QYRGVTFYRRTGRWESHIWD---CGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNLA 230 (385)
Q Consensus 172 ~yRGV~~~r~~gKW~A~I~~---~gK~i~LGtFdT~EeAArAYD~Aa~kl~G~~a~~NFp~s 230 (385)
+||||++ +++|||+|+|++ +++++|||+|+|+||||+|||.|+++++|..+.+|||.+
T Consensus 2 ~yrGV~~-r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~ 62 (63)
T 1gcc_A 2 HYRGVRQ-RPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR 62 (63)
T ss_dssp CCTTEEE-ETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred CcccEee-CCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCc
Confidence 6999996 579999999999 478999999999999999999999999999999999964
No 3
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=95.37 E-value=0.0099 Score=47.03 Aligned_cols=29 Identities=28% Similarity=0.536 Sum_probs=25.7
Q ss_pred CCCCCcccceeecCCCcEEEEEEeCCeEE
Q 016650 168 SRSSQYRGVTFYRRTGRWESHIWDCGKQV 196 (385)
Q Consensus 168 ~~sS~yRGV~~~r~~gKW~A~I~~~gK~i 196 (385)
..+|+|.||+|+++.+.|.|.-..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCeEe
Confidence 46799999999999999999999998864
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=95.19 E-value=0.00045 Score=61.47 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=46.1
Q ss_pred cccccCCCccccccCCCCCCCCCCCcccceeecCCCcEEEEEEeCCeEEeeCCCCCHHHHHHHH
Q 016650 148 EVRVTQQSSPVVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAY 211 (385)
Q Consensus 148 ~LR~at~~~n~~nk~r~~~~~~sS~yRGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAY 211 (385)
-||++|+++|..++.+.+.. ..++||.+ +..++|.+.|... +.++||.|+|.+|||++|
T Consensus 87 NL~~~t~~eN~~~~~~~~~~---~~~~g~~~-~~~~k~~~vi~~~-~~~~~~~f~s~~eAa~~~ 145 (174)
T 1u3e_M 87 NLRWVTQKINVENQMSRGTL---NVSKAQQI-AKIKNQKPIIVIS-PDGIEKEYPSTKCACEEL 145 (174)
T ss_dssp GEEEECHHHHHHHHHHHTCC---CCHHHHHH-HHHHTCCCEEEEC-TTSCEEEESCHHHHHHHH
T ss_pred HcEECCHHHHhhcccccCcc---cceeeeee-ccCCCCceEEEEc-CCceEEeeCCHHHHHHHH
Confidence 47888888888776544321 22578987 6778899999988 778899999999999886
No 5
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=83.09 E-value=0.59 Score=36.93 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=21.5
Q ss_pred CCcccccCeEEee-cCeEeEEEceecCceee
Q 016650 260 RGSSKYRGVTLHK-CGRWEARMGQFLGKKYI 289 (385)
Q Consensus 260 r~sS~yrGV~~~k-~gkW~A~I~~~~~gK~i 289 (385)
..+|+|.||+|++ .+.|.|.- ..+|++.
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W--~e~g~rr 31 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFF--YDGASRR 31 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEE--EETTEEE
T ss_pred CCCCCCCcEEeecCCceEEEEE--ecCCeEe
Confidence 3479999999998 78999998 4455543
No 6
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=78.65 E-value=0.18 Score=44.49 Aligned_cols=88 Identities=10% Similarity=-0.025 Sum_probs=52.4
Q ss_pred HHHHHHHHccCccc---cccccc-cchhhhhhhhhhhhhhhHhhhhhcccccccCCcccccCeEEeecCeEeEEEceecC
Q 016650 210 AYDRAAIKFRGVDA---DINFNL-ADYEDDMKQMKNLTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLG 285 (385)
Q Consensus 210 AYD~Aa~kl~G~~a---~~NFp~-s~y~~el~~m~~lSKEE~V~aLRRqs~g~sr~sS~yrGV~~~k~gkW~A~I~~~~~ 285 (385)
++...+..|.|... .+++-. ......+.-|.-.|..|......+... . ...+||.+.+.++|.+.| .+.
T Consensus 55 vHrlVa~~f~~~~~~~~~v~H~dg~k~nn~~~NL~~~t~~eN~~~~~~~~~---~--~~~~g~~~~~~~k~~~vi--~~~ 127 (174)
T 1u3e_M 55 VHRLVAIHFCEGYEEGLVVDHKDGNKDNNLSTNLRWVTQKINVENQMSRGT---L--NVSKAQQIAKIKNQKPII--VIS 127 (174)
T ss_dssp HHHHHHHHHCTTCCTTCEEEETTSCTTCCCGGGEEEECHHHHHHHHHHHTC---C--CCHHHHHHHHHHTCCCEE--EEC
T ss_pred eHHHHHHHhcCCCCCCCEEEcCCCCCCCCCHHHcEECCHHHHhhcccccCc---c--cceeeeeeccCCCCceEE--EEc
Confidence 56666677776432 122211 112344566666777776654433321 1 124577652256799988 345
Q ss_pred ceeeecCCCCCHHHHHHHHH
Q 016650 286 KKYIYLGLFDSEVEAARAYD 305 (385)
Q Consensus 286 gK~i~LGtFdTeeEAArAYD 305 (385)
+..+||.|+|.+|||++|.
T Consensus 128 -~~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 128 -PDGIEKEYPSTKCACEELG 146 (174)
T ss_dssp -TTSCEEEESCHHHHHHHHT
T ss_pred -CCceEEeeCCHHHHHHHHC
Confidence 6678999999999999963
No 7
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=78.51 E-value=11 Score=34.92 Aligned_cols=134 Identities=13% Similarity=0.160 Sum_probs=83.2
Q ss_pred CCcccceeecCCCcEEEEEEeCCeEEeeCCCCCHHHHHHHHHHHHHHccCccccccc---cccchhhhhhhhhhhhhhhH
Q 016650 171 SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINF---NLADYEDDMKQMKNLTKEEF 247 (385)
Q Consensus 171 S~yRGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~kl~G~~a~~NF---p~s~y~~el~~m~~lSKEE~ 247 (385)
.+|-||.++-+.-+-.+-|+..||-+..|. .++++|..|.++.+..+........| ....--.....--.+..+.+
T Consensus 75 e~Fpglv~Rl~~Pk~t~LIF~SGKiV~TGA-kS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~l 153 (218)
T 3eik_A 75 KRFAAVIMRIREPKTTALIFASGKMVITGA-KSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGL 153 (218)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHH
T ss_pred ccCceEEEEecCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHH
Confidence 578888887888899999999999988876 57899999999888777432212222 11100000000001112222
Q ss_pred hhhhhcccccccCCcccccCeEEee-cCeEeEEEceecCceeeecCCCCCHHHHHHHHHHHHHHh
Q 016650 248 VHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC 311 (385)
Q Consensus 248 V~aLRRqs~g~sr~sS~yrGV~~~k-~gkW~A~I~~~~~gK~i~LGtFdTeeEAArAYD~Aai~l 311 (385)
....+... .=....|-|+.++- .-|=...| +..||-+-.|. .+++|+..|++...-.|
T Consensus 154 a~~~~~~~---~YEPE~fPGliyR~~~pkvt~lI--F~SGKiviTGa-ks~~d~~~A~~~I~p~L 212 (218)
T 3eik_A 154 AYAHSNYC---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KVRDDIYQAFNNIYPVL 212 (218)
T ss_dssp HHHSTTTE---ECCTTTSSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHhccCCc---EECCccCceEEEEcCCCCEEEEE--eCCCeEEEEec-CCHHHHHHHHHHHHHHH
Confidence 22222111 11245788998765 45666677 78899888887 78999999998765433
No 8
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii}
Probab=73.80 E-value=29 Score=31.32 Aligned_cols=134 Identities=16% Similarity=0.199 Sum_probs=76.9
Q ss_pred CCCcccceeecCCCcEEEEEEeCCeEEeeCCCCCHHHHHHHHHHHHHHcc--Ccc-c-cccccccchhhhhhhhhhhhhh
Q 016650 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFR--GVD-A-DINFNLADYEDDMKQMKNLTKE 245 (385)
Q Consensus 170 sS~yRGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~kl~--G~~-a-~~NFp~s~y~~el~~m~~lSKE 245 (385)
..+|-||.++-+.-+=.+.|+..||-+--|.. ++++|..|..+.+..+. |-. . ..+|.+..--.....--.+..+
T Consensus 44 P~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGAk-S~e~a~~a~~~~~~~L~~lg~~~~~~~~~~I~NIVas~~l~~~i~L~ 122 (188)
T 2z8u_A 44 PEQFPGLVCRLSVPKVALLIFRSGKVNCTGAK-SKEEAEIAIKKIIKELKDAGIDVIENPEIKIQNMVATADLGIEPNLD 122 (188)
T ss_dssp -----CEEEEETTTTEEEEECTTSEEEEEEES-SHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEEEEEEECSSCCCHH
T ss_pred CCCcccEEEEcCCCcEEEEEeCCCeEEEecCC-CHHHHHHHHHHHHHHHHhcCCCccccCceEEEEEEEEEecCCccCHH
Confidence 35788898877888889999999998877764 66788888877765553 321 1 1222211100000000011122
Q ss_pred hHhhhhhcccccccCCcccccCeEEee-cCeEeEEEceecCceeeecCCCCCHHHHHHHHHHHHHHh
Q 016650 246 EFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC 311 (385)
Q Consensus 246 E~V~aLRRqs~g~sr~sS~yrGV~~~k-~gkW~A~I~~~~~gK~i~LGtFdTeeEAArAYD~Aai~l 311 (385)
.+...++.-. =....|-|+.++- .-|=.+.| +..||-+-.|. .+++|+..|.++....+
T Consensus 123 ~la~~~~~~e----YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L 182 (188)
T 2z8u_A 123 DIALMVEGTE----YEPEQFPGLVYRLDDPKVVVLI--FGSGKVVITGL-KSEEDAKRALKKILDTI 182 (188)
T ss_dssp HHHHHSTTEE----ECTTTSSSEEEEEETTEEEEEE--CTTSEEEEESC-SCHHHHHHHHHHHHHHH
T ss_pred HHHhhCcCcE----ECCccCceEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 2222222111 1245788998764 55667777 78899888876 56889999988866544
No 9
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A
Probab=68.49 E-value=34 Score=30.59 Aligned_cols=134 Identities=17% Similarity=0.190 Sum_probs=79.7
Q ss_pred CCCcccceeecCCCcEEEEEEeCCeEEeeCCCCCHHHHHHHHHHHHHHcc--Ccc-c-cccccccchhhhhhhhhhhhhh
Q 016650 170 SSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFR--GVD-A-DINFNLADYEDDMKQMKNLTKE 245 (385)
Q Consensus 170 sS~yRGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~kl~--G~~-a-~~NFp~s~y~~el~~m~~lSKE 245 (385)
..+|-||.++-+.-+-.+.|+..||-+--|. .++++|..|..+.+..+. |.. . ..+|.+..--.....--.+..+
T Consensus 40 P~~fpgli~Rl~~P~~t~lIF~SGKiv~TGa-kS~~~~~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~ 118 (182)
T 1ais_A 40 PEEFPGIICHLDDPKVALLIFSSGKLVVTGA-KSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLD 118 (182)
T ss_dssp TTTCSSEEEECSSSCCEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHTTCCCSSSCEEEEEEEEEEEECSSCCCHH
T ss_pred CCccccEEEEcCCCcEEEEEeCCCeEEEecC-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEEEcCCccCHH
Confidence 3577888877667778899999999776664 678888888888776653 321 1 1233211100000000011122
Q ss_pred hHhhhhhcccccccCCcccccCeEEee-cCeEeEEEceecCceeeecCCCCCHHHHHHHHHHHHHHh
Q 016650 246 EFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC 311 (385)
Q Consensus 246 E~V~aLRRqs~g~sr~sS~yrGV~~~k-~gkW~A~I~~~~~gK~i~LGtFdTeeEAArAYD~Aai~l 311 (385)
++...++.-. =....|-|+.++- .-|=.+.| +..||-+-.|. .+++|+..|.++....+
T Consensus 119 ~la~~~~~~~----YePe~fpgli~R~~~pk~~~lI--F~SGKiviTGa-ks~~~~~~a~~~i~~~L 178 (182)
T 1ais_A 119 VVALTLPNCE----YEPEQFPGVIYRVKEPKSVILL--FSSGKIVCSGA-KSEADAWEAVRKLLREL 178 (182)
T ss_dssp HHHHHSTTEE----CCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred HHHhhCCCCE----ECCccCceEEEEeCCCcEEEEE--ecCCEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 2222222111 2245788998765 44666677 78898887775 57889999988866655
No 10
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1
Probab=67.64 E-value=48 Score=30.08 Aligned_cols=134 Identities=16% Similarity=0.205 Sum_probs=80.9
Q ss_pred CCcccceeecCCCcEEEEEEeCCeEEeeCCCCCHHHHHHHHHHHHHHccC--cc-c-cccccccchhhhhhhhhhhhhhh
Q 016650 171 SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRG--VD-A-DINFNLADYEDDMKQMKNLTKEE 246 (385)
Q Consensus 171 S~yRGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~kl~G--~~-a-~~NFp~s~y~~el~~m~~lSKEE 246 (385)
.+|-||.++-+.-+-.+.|+..||-+--|.. ++++|..|..+.+..+.. -. . ..+|.+..--.....--.+..+.
T Consensus 45 ~~fpgli~Rl~~Pk~t~lIF~SGKiv~TGak-S~e~a~~a~~~i~~~L~~lG~~~~~~~~~~I~NIVas~~l~~~i~L~~ 123 (198)
T 1mp9_A 45 DQFPGLIFRLESPKITSLIFKSGKMVVTGAK-STDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDK 123 (198)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEECCS-SHHHHHHHHHHHHHHHHHTTCCCSSCCEEEEEEEEEEEECSSEECHHH
T ss_pred ccccceEEEcCCCceEEEEeCCCeEEEeccC-CHHHHHHHHHHHHHHHHHcCCcccCcCceEEEEEEEEeeCCCccCHHH
Confidence 4688888877788889999999998888875 667888888887666532 21 1 12222111000000000111222
Q ss_pred HhhhhhcccccccCCcccccCeEEee-cCeEeEEEceecCceeeecCCCCCHHHHHHHHHHHHHHhc
Q 016650 247 FVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKCN 312 (385)
Q Consensus 247 ~V~aLRRqs~g~sr~sS~yrGV~~~k-~gkW~A~I~~~~~gK~i~LGtFdTeeEAArAYD~Aai~l~ 312 (385)
+...++.- .=....|-|+.++- .-|=.+.| +..||-+-.|. .+++++..|.++....+.
T Consensus 124 la~~~~~~----~YePe~fPgliyR~~~Pk~t~lI--F~SGKiviTGa-ks~~~~~~A~~~i~~~L~ 183 (198)
T 1mp9_A 124 AAFLLENN----MYEPEQFPGLIYRMDEPRVVLLI--FSSGKMVITGA-KREDEVHKAVKKIFDKLV 183 (198)
T ss_dssp HHHHSSSE----ECCTTTCSSEEEEETTTTEEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred HHhhcCCc----EECCccCCeEEEEeCCCcEEEEE--eCCCEEEEEec-CCHHHHHHHHHHHHHHHH
Confidence 22222211 12345788998765 45666777 78898887776 567899999988666553
No 11
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=47.80 E-value=33 Score=25.52 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=17.6
Q ss_pred EEeeCCCCCHHHHHHHHHHHHHH
Q 016650 195 QVYLGGFDTAHAAARAYDRAAIK 217 (385)
Q Consensus 195 ~i~LGtFdT~EeAArAYD~Aa~k 217 (385)
.|.+|.|.+.+.|.+...+...+
T Consensus 11 ~vQvGaf~~~~~A~~~~~~L~~~ 33 (79)
T 1x60_A 11 KVQIGAFKVKANADSLASNAEAK 33 (79)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCHHHHHHHHHHHHhC
Confidence 37789999999998877665443
No 12
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=47.25 E-value=21 Score=32.90 Aligned_cols=42 Identities=19% Similarity=0.033 Sum_probs=31.1
Q ss_pred cCeEEeecCeEeEEEceecCceeeecCCCCCHHHHHHHHHHHHHHh
Q 016650 266 RGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAIKC 311 (385)
Q Consensus 266 rGV~~~k~gkW~A~I~~~~~gK~i~LGtFdTeeEAArAYD~Aai~l 311 (385)
.||..++.|.|..+. ..+||++.+|. |..||..+...+...+
T Consensus 14 ~~v~~~~~g~~~~r~--~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRD--PRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEEC--TTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEe--ecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 478776688999887 46788899996 8888877665554443
No 13
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=44.89 E-value=24 Score=32.56 Aligned_cols=42 Identities=21% Similarity=0.175 Sum_probs=31.4
Q ss_pred ccceeecCCCcEEEEEEeCCeEEeeCCCCCHHHHHHHHHHHHHHc
Q 016650 174 RGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKF 218 (385)
Q Consensus 174 RGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~kl 218 (385)
.||+ .++.|.|..+....||++.+|. |..+|-.+...+...+
T Consensus 14 ~~v~-~~~~g~~~~r~~~~gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLY-IRNNGYYCYRDPRTGKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEE-EETTTEEEEECTTTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccce-ecCCCeEEEEeecCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence 3675 5678899988777899999996 8888877666554443
No 14
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=22.01 E-value=1.3e+02 Score=23.52 Aligned_cols=36 Identities=17% Similarity=0.291 Sum_probs=26.2
Q ss_pred CcEEEEEEeCCe--EEeeCCCC--CHHHHHHHHHHHHHHc
Q 016650 183 GRWESHIWDCGK--QVYLGGFD--TAHAAARAYDRAAIKF 218 (385)
Q Consensus 183 gKW~A~I~~~gK--~i~LGtFd--T~EeAArAYD~Aa~kl 218 (385)
..|.-+.+.+|| ++-||.|+ |..+|-...+++...+
T Consensus 36 K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 36 RHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 358888877877 57899996 6777776666665554
No 15
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=21.44 E-value=4.2e+02 Score=23.37 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=75.7
Q ss_pred CCcccceeecCCCcEEEEEEeCCeEEeeCCCCCHHHHHHHHHHHHHHcc--Cccc-cccccccchhh--hhhhhhhhhhh
Q 016650 171 SQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFR--GVDA-DINFNLADYED--DMKQMKNLTKE 245 (385)
Q Consensus 171 S~yRGV~~~r~~gKW~A~I~~~gK~i~LGtFdT~EeAArAYD~Aa~kl~--G~~a-~~NFp~s~y~~--el~~m~~lSKE 245 (385)
.+|-||.++-+.-|-.+.|+..||-+--|. .++|+|..|.++.+..+. |... ..||....--. +++. .+.-+
T Consensus 37 e~fpgli~R~~~Pk~~~lIF~SGKiv~TGa-ks~e~~~~a~~~i~~~L~~lg~~~~~~~~~i~NIvas~dl~~--~I~Le 113 (180)
T 1ytb_A 37 KRFAAVIMRIREPKTTALIFASGKMVVTGA-KSEDDSKLASRKYARIIQKIGFAAKFTDFKIQNIVGSCDVKF--PIRLE 113 (180)
T ss_dssp TTCSSEEEEETTTTEEEEECTTSEEEEEEE-SSHHHHHHHHHHHHHHHHHHTCCCCCEEEEEEEEEEEEECSS--CBCHH
T ss_pred cccCCEEEEeCCCcEEEEEECCCeEEEEec-CCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCC--ccCHH
Confidence 578889887778888999999999887775 467788888888766653 3211 12332110000 0110 11122
Q ss_pred hHhhhhhcccccccCCcccccCeEEee-cCeEeEEEceecCceeeecCCCCCHHHHHHHHHHHHH
Q 016650 246 EFVHILRRQSTGFSRGSSKYRGVTLHK-CGRWEARMGQFLGKKYIYLGLFDSEVEAARAYDKAAI 309 (385)
Q Consensus 246 E~V~aLRRqs~g~sr~sS~yrGV~~~k-~gkW~A~I~~~~~gK~i~LGtFdTeeEAArAYD~Aai 309 (385)
.+........ .=....|-|+.++- .-|=...| +..||-+-.|. .+++|+..|++.-.-
T Consensus 114 ~la~~~~~~~---~YEPE~fPGliyR~~~pkv~~lI--F~SGkivitGa-k~~~~~~~a~~~i~p 172 (180)
T 1ytb_A 114 GLAFSHGTFS---SYEPELFPGLIYRMVKPKIVLLI--FVSGKIVLTGA-KQREEIYQAFEAIYP 172 (180)
T ss_dssp HHHHHTTTTE---ECCTTTCSSEEEECSSSCCEEEE--CTTSEEEEEEE-SSHHHHHHHHHHHHH
T ss_pred HHHHhcccce---EECCccCCcEEEEeCCCcEEEEE--ecCCeEEEEec-CCHHHHHHHHHHHHH
Confidence 2222211111 12245788998764 33444445 78888887776 567788888876543
Done!