Query 016652
Match_columns 385
No_of_seqs 193 out of 324
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 08:46:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016652.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/016652hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 1.8E-74 4E-79 575.4 21.1 244 1-377 87-335 (414)
2 PF01544 CorA: CorA-like Mg2+ 88.2 9.6 0.00021 36.1 12.4 71 141-211 109-179 (292)
3 PF05591 DUF770: Protein of un 61.5 19 0.00042 33.0 5.6 39 181-219 110-151 (157)
4 TIGR00383 corA magnesium Mg(2+ 61.3 61 0.0013 31.7 9.5 71 142-212 134-204 (318)
5 PRK09546 zntB zinc transporter 58.3 2E+02 0.0043 28.6 12.8 69 143-212 143-211 (324)
6 PF07106 TBPIP: Tat binding pr 58.1 87 0.0019 28.3 9.2 83 138-224 71-165 (169)
7 PF12325 TMF_TATA_bd: TATA ele 52.9 1.5E+02 0.0033 26.0 9.5 38 183-220 68-112 (120)
8 PF07889 DUF1664: Protein of u 52.4 89 0.0019 27.8 8.0 32 148-179 41-72 (126)
9 TIGR03358 VI_chp_5 type VI sec 50.3 29 0.00064 32.0 4.8 39 181-219 111-152 (159)
10 PF10234 Cluap1: Clusterin-ass 48.5 1.2E+02 0.0026 30.3 9.0 72 137-209 156-230 (267)
11 COG0598 CorA Mg2+ and Co2+ tra 45.6 1.7E+02 0.0036 29.3 9.8 74 142-215 139-212 (322)
12 PF11348 DUF3150: Protein of u 40.0 1.2E+02 0.0026 29.8 7.6 54 159-212 173-232 (257)
13 PF14712 Snapin_Pallidin: Snap 38.3 2.1E+02 0.0046 23.0 9.2 29 181-209 62-90 (92)
14 COG4710 Predicted DNA-binding 35.4 34 0.00074 28.0 2.5 38 187-227 15-57 (80)
15 PF11945 WASH_WAHD: WAHD domai 35.0 1.2E+02 0.0026 30.7 6.8 56 161-225 29-84 (297)
16 PF05377 FlaC_arch: Flagella a 35.0 74 0.0016 24.6 4.1 26 195-220 19-44 (55)
17 KOG4643 Uncharacterized coiled 33.2 1.6E+02 0.0034 34.8 8.0 68 146-226 173-240 (1195)
18 TIGR02132 phaR_Bmeg polyhydrox 32.3 2.8E+02 0.0061 26.4 8.3 60 148-207 77-138 (189)
19 COG3516 Predicted component of 31.7 71 0.0015 29.9 4.2 39 181-219 116-157 (169)
20 PF04611 AalphaY_MDB: Mating t 30.4 4.2E+02 0.0091 24.1 8.8 33 168-202 86-118 (147)
21 PF10083 DUF2321: Uncharacteri 29.8 3.5E+02 0.0077 25.1 8.4 74 135-210 76-150 (158)
22 PF05597 Phasin: Poly(hydroxya 29.7 4.1E+02 0.0089 23.7 8.8 67 143-209 58-128 (132)
23 KOG3647 Predicted coiled-coil 27.5 4.1E+02 0.0089 27.0 8.9 58 137-195 99-159 (338)
24 PF03233 Cauli_AT: Aphid trans 26.3 3.8E+02 0.0082 25.0 8.0 76 133-209 79-161 (163)
25 TIGR02976 phageshock_pspB phag 25.8 1.2E+02 0.0027 24.6 4.2 34 177-214 36-69 (75)
26 PF15397 DUF4618: Domain of un 24.9 5.7E+02 0.012 25.5 9.4 87 137-225 68-155 (258)
27 PF10224 DUF2205: Predicted co 24.6 1.4E+02 0.0031 24.6 4.4 45 182-227 22-66 (80)
28 KOG1830 Wiskott Aldrich syndro 24.1 1E+02 0.0022 33.0 4.2 92 144-236 26-118 (518)
29 PF06103 DUF948: Bacterial pro 24.0 3.8E+02 0.0083 21.5 8.1 21 154-174 30-50 (90)
30 TIGR01834 PHA_synth_III_E poly 23.7 4.5E+02 0.0097 27.0 8.7 51 161-211 267-317 (320)
31 PF04799 Fzo_mitofusin: fzo-li 23.6 6E+02 0.013 23.9 8.9 32 136-167 106-137 (171)
32 KOG3958 Putative dynamitin [Cy 23.0 2E+02 0.0043 29.6 5.9 19 150-168 191-209 (371)
33 PF08317 Spc7: Spc7 kinetochor 22.2 6.1E+02 0.013 25.5 9.4 7 63-69 79-85 (325)
34 COG1579 Zn-ribbon protein, pos 21.4 4.7E+02 0.01 25.8 8.1 37 181-217 87-123 (239)
35 PF14125 DUF4292: Domain of un 20.8 78 0.0017 29.4 2.5 31 25-55 31-67 (210)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-74 Score=575.39 Aligned_cols=244 Identities=58% Similarity=0.805 Sum_probs=206.1
Q ss_pred CccCCCCCCcccccCCCCCCCceeeecCCeEEeecccchheeecCceeeecCCCCCchHHHHHHHHHhhccccccccccc
Q 016652 1 MRRTGLPARDLRILDPLLSYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVVPFVEELQSRILCHYQATKSQEI 80 (385)
Q Consensus 1 mrr~gL~aRDLR~LDp~lS~pstILvRe~AILVNLe~IRAIItaDeVLLfd~~~~~v~~Fv~eL~~RL~~~~~~~~~~~~ 80 (385)
|+|+||+|||||++||+++||++|++||+||||||||||||||||+|+|||+.+| |.|+..++++||.........+.
T Consensus 87 ~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll~d~~~~-v~~~~~el~~~l~~~~~~~~~q~- 164 (414)
T KOG2662|consen 87 MKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLLLDSLDP-VIPYNEELQRRLPVELESRGNQL- 164 (414)
T ss_pred HHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhheeEeccccc-cchHHHHHHHHhccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999999999 99999999999986533211000
Q ss_pred cCCCCCccccccCCCCCCCCCCCCCCCCCCCCCccchhhhhhcccccccccCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 016652 81 NGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCLENEAK 160 (385)
Q Consensus 81 ~g~~~~~~~~~~~~~p~~~~~s~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~LPFEFRALEa~Le~vcs~Le~e~~ 160 (385)
+ .+.+.++.+||||||||+||+++|++|++++.
T Consensus 165 --------------------------------------------s---~~~~~~~~lPFEFrALE~aLe~~~s~L~~~~~ 197 (414)
T KOG2662|consen 165 --------------------------------------------S---SDGGSKDELPFEFRALEVALEAACSFLDSRLS 197 (414)
T ss_pred --------------------------------------------C---CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00122467999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHhhhhcccchhhhccccccCCCCCC
Q 016652 161 TLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTSSINER 240 (385)
Q Consensus 161 ~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDDeDMA~MYLT~K~~~~~~~~~~~~~~~~ 240 (385)
+||+.|||+||+|+++|++.|||+||.+|++|++|.+|||||||+||||||||+|||+||||+|+.+.++ +.
T Consensus 198 ~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mYLT~K~~~~~~-----~~--- 269 (414)
T KOG2662|consen 198 ELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQKVRDELEELLDDDDDMAEMYLTRKLAQASS-----PE--- 269 (414)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHHhhhccc-----cc---
Confidence 9999999999999999999999999999999999999999999999999999999999999999988654 10
Q ss_pred CCcchHHHhhhccccccchhhhhccccccccccchhhhhhcccchhhhhhhhcCCCCCcccccccccccccccccccccc
Q 016652 241 DDMDDEVLQSNMNNRHLKFCFFFVNCLFIFFPSMRLNLLSCFRTTAEISLEATGGSTSYEADFQNTENIHDNLFTQNIHS 320 (385)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (385)
.+++ +++
T Consensus 270 -----------------------------------------------------~~~~--------------------sp~ 276 (414)
T KOG2662|consen 270 -----------------------------------------------------SAPT--------------------SPT 276 (414)
T ss_pred -----------------------------------------------------cCCC--------------------Ccc
Confidence 0000 111
Q ss_pred ccCCCCc-----ccccccccCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHHhhhcccccchH
Q 016652 321 RASHGTR-----TSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTVRNSISPLNFGLL 377 (385)
Q Consensus 321 ~~~~~~~-----~~~~~~~~~~~~dvEelEmLLEaYf~qidgtlnkl~~lreyiddtE~~~~ 377 (385)
..++.++ .++ +. ...+|||||||||||||||||+|+||+.+|||||||||..|-
T Consensus 277 ~~~~~~r~~~~~~~s--~~-~~~dd~eElEMLLEaYf~qiD~~~nk~~~Lre~IddTEd~In 335 (414)
T KOG2662|consen 277 IKAGISRAKSNRASS--TV-RGEDDVEELEMLLEAYFMQIDSTLNKLESLREYIDDTEDIIN 335 (414)
T ss_pred ccCCccchhhcccch--hc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 1111111 111 11 128999999999999999999999999999999999998764
No 2
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=88.22 E-value=9.6 Score=36.09 Aligned_cols=71 Identities=21% Similarity=0.206 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Q 016652 141 FVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLD 211 (385)
Q Consensus 141 FRALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLD 211 (385)
..++..+|..++..+...+..++.....+=+.+.+.-....+.++..+++.|..+..-+...++.+.+++.
T Consensus 109 ~~ll~~il~~~~~~~~~~l~~l~~~l~~le~~~~~~~~~~~~~~l~~l~~~l~~l~~~l~~~~~~l~~~~~ 179 (292)
T PF01544_consen 109 EDLLYAILDEIVDDYFEVLEELEDELDELEDELDDRPSNELLRELFDLRRELSRLRRSLSPLREVLQRLLR 179 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTTHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 36788999999999999999998887777677766677788999999999999999999999999986665
No 3
>PF05591 DUF770: Protein of unknown function (DUF770); InterPro: IPR008312 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, these proteins are encoded in type VI secretion loci (including the SCI genomic island in Salmonella enterica and the imp locus in Rhizobium leguminosarum) implicated in pathogenicity and protein secretion [, , [].
Probab=61.54 E-value=19 Score=33.02 Aligned_cols=39 Identities=21% Similarity=0.506 Sum_probs=31.6
Q ss_pred hHHHHHHHhhHHHHHHHHHH---HHHHHHHHhhCCHHHHhhh
Q 016652 181 NLERVRQIKSRLVAITGRVQ---KVRDELEHLLDDDEDMAEM 219 (385)
Q Consensus 181 nLErLR~lKsrL~~L~~RVq---kVRd~LEeLLDDDeDMA~M 219 (385)
.|.+|..++++|..|.+.+. .+|+.|+++|.|.+.++.+
T Consensus 110 ~L~~LlelR~~L~~L~~~l~~~~~~r~~l~~~l~~~~~~~~l 151 (157)
T PF05591_consen 110 ELRKLLELREQLRDLKGPLDNNPAFRKLLQEILSDPEALEKL 151 (157)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHCCHHHHHHH
Confidence 46667777888888877664 5999999999999998875
No 4
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=61.33 E-value=61 Score=31.72 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCC
Q 016652 142 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDD 212 (385)
Q Consensus 142 RALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDD 212 (385)
..|-.+|..++..+..-+..++.++..+=+.+.++-....++++-.+|+.|..+..-+...++.++.+...
T Consensus 134 ~ll~~il~~ivd~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~ 204 (318)
T TIGR00383 134 YLLYDIFDAIIDSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRK 204 (318)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46777888888887777888888777665666555556789999999999999999999999999988754
No 5
>PRK09546 zntB zinc transporter; Reviewed
Probab=58.32 E-value=2e+02 Score=28.57 Aligned_cols=69 Identities=13% Similarity=0.118 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCC
Q 016652 143 ALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDD 212 (385)
Q Consensus 143 ALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDD 212 (385)
.|-.+|..++..+..-+..++.....+=+.+-..-+ .+++++-.+|+.+..+..-+.-.|+++..|...
T Consensus 143 ll~~lld~ivd~~~~~l~~i~~~ld~lE~~l~~~~~-~~~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~ 211 (324)
T PRK09546 143 WLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQQI-PPRGELALLRKQLIVMRRYMAPQRDVFARLASE 211 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455777777777777776776665544333422211 246788999999999999999999999988853
No 6
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.06 E-value=87 Score=28.28 Aligned_cols=83 Identities=22% Similarity=0.344 Sum_probs=53.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccChhhHHH-HHHHhhHHHHHHHHHHHHHH--------H
Q 016652 138 PFEFVALEACLEAACSCLENEAKTLEQEAHPA---LDKLTSKISTLNLER-VRQIKSRLVAITGRVQKVRD--------E 205 (385)
Q Consensus 138 PFEFRALEa~Le~vcs~Le~e~~~LE~~a~~a---LdeLtskVst~nLEr-LR~lKsrL~~L~~RVqkVRd--------~ 205 (385)
|=|+..|+.= +..|..++..++..+..+ |..|.+..++..|.. +-.++..+..+..|++.++. +
T Consensus 71 ~eel~~ld~e----i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee 146 (169)
T PF07106_consen 71 PEELAELDAE----IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEE 146 (169)
T ss_pred chhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 3456666543 677777777777777665 455566666655544 44788888899999998886 4
Q ss_pred HHHhhCCHHHHhhhhcccc
Q 016652 206 LEHLLDDDEDMAEMYLTEK 224 (385)
Q Consensus 206 LEeLLDDDeDMA~MYLT~K 224 (385)
++.+-..-.-+..+|-.||
T Consensus 147 ~~~~~~~~~~~~k~w~kRK 165 (169)
T PF07106_consen 147 KEKLEKEYKKWRKEWKKRK 165 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 7
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=52.89 E-value=1.5e+02 Score=26.01 Aligned_cols=38 Identities=32% Similarity=0.540 Sum_probs=28.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHH-------HHHHHhhCCHHHHhhhh
Q 016652 183 ERVRQIKSRLVAITGRVQKVR-------DELEHLLDDDEDMAEMY 220 (385)
Q Consensus 183 ErLR~lKsrL~~L~~RVqkVR-------d~LEeLLDDDeDMA~MY 220 (385)
.++..++..+..+..|.+... +.+++|=.|=.||.+||
T Consensus 68 ~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~my 112 (120)
T PF12325_consen 68 KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMY 112 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 445566677777777766643 56788888999999999
No 8
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=52.42 E-value=89 Score=27.83 Aligned_cols=32 Identities=9% Similarity=0.273 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh
Q 016652 148 LEAACSCLENEAKTLEQEAHPALDKLTSKIST 179 (385)
Q Consensus 148 Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst 179 (385)
|..+|..+-.++..+-.....+=+.|+.+|.+
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~ 72 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDR 72 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554555555555556655544
No 9
>TIGR03358 VI_chp_5 type VI secretion protein, VC_A0107 family. Work by Mougous, et al. (2006), describes IAHP-related loci as a type VI secretion system (PubMed:16763151). This protein family is associated with type VI secretion loci, although not treated explicitly by Mougous, et al.
Probab=50.27 E-value=29 Score=32.02 Aligned_cols=39 Identities=21% Similarity=0.458 Sum_probs=31.6
Q ss_pred hHHHHHHHhhHHHHHHHHH---HHHHHHHHHhhCCHHHHhhh
Q 016652 181 NLERVRQIKSRLVAITGRV---QKVRDELEHLLDDDEDMAEM 219 (385)
Q Consensus 181 nLErLR~lKsrL~~L~~RV---qkVRd~LEeLLDDDeDMA~M 219 (385)
.|.+|..++.+|++|.++. .++|+.|+++|.|.+.++.+
T Consensus 111 ~L~~LlelR~~L~~L~~~l~~~~~~~~~l~~~l~d~~~~~~L 152 (159)
T TIGR03358 111 ELKKLLEAREALRDLKGPLDNNPDLRKLLQELLKDKDLLEKL 152 (159)
T ss_pred HHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHCCHHHHHHH
Confidence 4666777888888888776 45999999999999988765
No 10
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=48.51 E-value=1.2e+02 Score=30.34 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=49.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 016652 137 LPFEFVALEACLEAACSCLENEAKTLEQEAHPALD---KLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHL 209 (385)
Q Consensus 137 LPFEFRALEa~Le~vcs~Le~e~~~LE~~a~~aLd---eLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeL 209 (385)
-|+|.--+|-++..++..+..++..+++.+..+=. .|+.||..++.| +-+.++||..|.+===.+-|+.|.+
T Consensus 156 r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~E-LER~qKRL~sLq~vRPAfmdEyEkl 230 (267)
T PF10234_consen 156 RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQE-LERNQKRLQSLQSVRPAFMDEYEKL 230 (267)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChHHHHHHHHH
Confidence 69999999999999999999999998888777543 366666554444 3345556655543222234555544
No 11
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=45.64 E-value=1.7e+02 Score=29.30 Aligned_cols=74 Identities=24% Similarity=0.260 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHH
Q 016652 142 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDED 215 (385)
Q Consensus 142 RALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDDeD 215 (385)
.++..+|+.+...+-.-+..++.....+=+.+..+-....|+++..+++.|..+..-+...++++..++.++.+
T Consensus 139 ~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~ 212 (322)
T COG0598 139 ELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLD 212 (322)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcc
Confidence 45666677777666666666666666655566555555789999999999999999999999999999988765
No 12
>PF11348 DUF3150: Protein of unknown function (DUF3150); InterPro: IPR021496 This bacterial family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=39.98 E-value=1.2e+02 Score=29.83 Aligned_cols=54 Identities=26% Similarity=0.445 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHH-hh--ccChhhHHHHHHHhhHHHHH---HHHHHHHHHHHHHhhCC
Q 016652 159 AKTLEQEAHPALDKL-TS--KISTLNLERVRQIKSRLVAI---TGRVQKVRDELEHLLDD 212 (385)
Q Consensus 159 ~~~LE~~a~~aLdeL-ts--kVst~nLErLR~lKsrL~~L---~~RVqkVRd~LEeLLDD 212 (385)
..++...|+.+++.- .. +|+.+.|..+|.|..+|..| ..||+.+.++|+++|..
T Consensus 173 ~~Eia~~A~~~~~~~~~gk~~v~~kal~~lr~i~~Kl~~lsFld~~v~~l~~~i~~~L~~ 232 (257)
T PF11348_consen 173 FDEIAQEARDILEKSFAGKDQVSQKALSPLRRIRDKLAGLSFLDPRVAPLVDMIDAVLNS 232 (257)
T ss_pred HHHHHHHHHHHHHhhhcCcccccHhHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHh
Confidence 345666677777654 33 59999999999999997765 68999999999999864
No 13
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=38.29 E-value=2.1e+02 Score=23.01 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=24.1
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 016652 181 NLERVRQIKSRLVAITGRVQKVRDELEHL 209 (385)
Q Consensus 181 nLErLR~lKsrL~~L~~RVqkVRd~LEeL 209 (385)
-..+|..+|+++..+..|++++++-+..|
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667889999999999999999887764
No 14
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=35.41 E-value=34 Score=27.99 Aligned_cols=38 Identities=24% Similarity=0.535 Sum_probs=26.5
Q ss_pred HHhhHHHHHHHHH-----HHHHHHHHHhhCCHHHHhhhhcccchhh
Q 016652 187 QIKSRLVAITGRV-----QKVRDELEHLLDDDEDMAEMYLTEKLMQ 227 (385)
Q Consensus 187 ~lKsrL~~L~~RV-----qkVRd~LEeLLDDDeDMA~MYLT~K~~~ 227 (385)
.+|.||..|+.+. --||++||+-++ +|.++||-.-...
T Consensus 15 E~~eRL~~Ls~~tgrtkayyvrEaIE~~ie---emED~ylA~~ale 57 (80)
T COG4710 15 ELKERLDNLSKNTGRTKAYYVREAIEAYIE---EMEDFYLAVNALE 57 (80)
T ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4566666665543 349999999984 6888898765543
No 15
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=34.99 E-value=1.2e+02 Score=30.69 Aligned_cols=56 Identities=20% Similarity=0.414 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHhhhhcccch
Q 016652 161 TLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKL 225 (385)
Q Consensus 161 ~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDDeDMA~MYLT~K~ 225 (385)
.|++.+..+.+.+. .||-+.|.||..+.+|+..++.-|++|=....-+ .+|-+.|.
T Consensus 29 ~L~~v~~diF~rI~--------~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs~kAi-~vfs~aky 84 (297)
T PF11945_consen 29 YLDKVSNDIFSRIS--------ARVERNRERLQAIQQRIEVAQAKIEKLQGSKKAI-TVFSPAKY 84 (297)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccE-EEeCcccC
Confidence 36666666666655 4567788888888888888888888886654422 34444443
No 16
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=34.99 E-value=74 Score=24.59 Aligned_cols=26 Identities=12% Similarity=0.454 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHhhhh
Q 016652 195 ITGRVQKVRDELEHLLDDDEDMAEMY 220 (385)
Q Consensus 195 L~~RVqkVRd~LEeLLDDDeDMA~MY 220 (385)
+...-+.+++.++++=++=.|+-.||
T Consensus 19 vk~en~~i~~~ve~i~envk~ll~lY 44 (55)
T PF05377_consen 19 VKKENEEISESVEKIEENVKDLLSLY 44 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444443333334444444
No 17
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=33.20 E-value=1.6e+02 Score=34.79 Aligned_cols=68 Identities=29% Similarity=0.449 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHhhhhcccch
Q 016652 146 ACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKL 225 (385)
Q Consensus 146 a~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDDeDMA~MYLT~K~ 225 (385)
-.|...|..+++..+.|+.+ |+. +-+.++++++.|..++++..+.|.+++++|++-. =++||--+-.
T Consensus 173 ~hL~velAdle~kir~LrqE-------lEE-----K~enll~lr~eLddleae~~klrqe~~e~l~ea~-ra~~yrdeld 239 (1195)
T KOG4643|consen 173 LHLEVELADLEKKIRTLRQE-------LEE-----KFENLLRLRNELDDLEAEISKLRQEIEEFLDEAH-RADRYRDELD 239 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHH
Confidence 45677777777777777665 332 3466789999999999999999999999997654 4567765543
Q ss_pred h
Q 016652 226 M 226 (385)
Q Consensus 226 ~ 226 (385)
.
T Consensus 240 a 240 (1195)
T KOG4643|consen 240 A 240 (1195)
T ss_pred H
Confidence 3
No 18
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=32.26 E-value=2.8e+02 Score=26.40 Aligned_cols=60 Identities=17% Similarity=0.269 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cChhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 016652 148 LEAACSCLENEAKTLEQEAHPALDKLTSK--ISTLNLERVRQIKSRLVAITGRVQKVRDELE 207 (385)
Q Consensus 148 Le~vcs~Le~e~~~LE~~a~~aLdeLtsk--Vst~nLErLR~lKsrL~~L~~RVqkVRd~LE 207 (385)
+...+-.||..+..+|.......|.|... -++.-=++|-.+|++|..+..+|.++-..||
T Consensus 77 vA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 77 VASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556677777777776666655555511 0111112344566666666666666555555
No 19
>COG3516 Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.74 E-value=71 Score=29.89 Aligned_cols=39 Identities=18% Similarity=0.451 Sum_probs=29.9
Q ss_pred hHHHHHHHhhHHHHHHHHH---HHHHHHHHHhhCCHHHHhhh
Q 016652 181 NLERVRQIKSRLVAITGRV---QKVRDELEHLLDDDEDMAEM 219 (385)
Q Consensus 181 nLErLR~lKsrL~~L~~RV---qkVRd~LEeLLDDDeDMA~M 219 (385)
.|.+|...+..|..|.+.. -.+|+.|++||.|++.+..+
T Consensus 116 ~L~kLLeaR~~L~~L~~~ldg~~~~e~~l~~lL~n~~~l~~L 157 (169)
T COG3516 116 ELKKLLEARTALADLKGPLDGNPAFEELLQDLLKNEELLQKL 157 (169)
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHcCHHHHHHH
Confidence 4566667777777777654 35999999999999987765
No 20
>PF04611 AalphaY_MDB: Mating type protein A alpha Y mating type dependent binding region ; InterPro: IPR007689 Mating-type protein A-alpha specifies the A-alpha-Y mating type. The A-alpha-Y protein binds to the AalphaZ protein of another mating type in Schizophyllum commune [] and may also regulate gene expression of the homokaryotic cell.; GO: 0006355 regulation of transcription, DNA-dependent, 0019953 sexual reproduction
Probab=30.43 E-value=4.2e+02 Score=24.12 Aligned_cols=33 Identities=30% Similarity=0.389 Sum_probs=24.1
Q ss_pred HHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHH
Q 016652 168 PALDKLTSKISTLNLERVRQIKSRLVAITGRVQKV 202 (385)
Q Consensus 168 ~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkV 202 (385)
...+.-...|+..||+.+-.++-++ +.+.|||-
T Consensus 86 e~F~~tA~svsP~Nlhll~~LR~rl--yt~QVekW 118 (147)
T PF04611_consen 86 ESFDITAKSVSPHNLHLLNQLRFRL--YTQQVEKW 118 (147)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHH--HHHHHHHH
Confidence 3455566789999999988887765 66666663
No 21
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=29.83 E-value=3.5e+02 Score=25.12 Aligned_cols=74 Identities=23% Similarity=0.181 Sum_probs=47.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHH-HHHHHHHHhh
Q 016652 135 KVLPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQ-KVRDELEHLL 210 (385)
Q Consensus 135 ~~LPFEFRALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVq-kVRd~LEeLL 210 (385)
.+.|+--++||++-+-+- .++.-..+..+..+..|++|+..-....+- +.++|+-|+.+..-+. .+||.|-+++
T Consensus 76 kpyPWt~~~L~aa~el~e-e~eeLs~deke~~~~sl~dL~~d~PkT~vA-~~rfKk~~~K~g~~v~~~~~dIlVdv~ 150 (158)
T PF10083_consen 76 KPYPWTENALEAANELIE-EDEELSPDEKEQFKESLPDLTKDTPKTKVA-ATRFKKILSKAGSIVGDAIRDILVDVA 150 (158)
T ss_pred CCCchHHHHHHHHHHHHH-HhhcCCHHHHHHHHhhhHHHhhcCCccHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 458999999999988765 333333334445666788887764445554 5567777666655443 3666665554
No 22
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=29.75 E-value=4.1e+02 Score=23.75 Aligned_cols=67 Identities=19% Similarity=0.323 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChh---hHHHHH-HHhhHHHHHHHHHHHHHHHHHHh
Q 016652 143 ALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTL---NLERVR-QIKSRLVAITGRVQKVRDELEHL 209 (385)
Q Consensus 143 ALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~---nLErLR-~lKsrL~~L~~RVqkVRd~LEeL 209 (385)
.++-....+-...+..+..+...+...+|.|+..+..+ -|.||- .-++-+.+|+.||..+...|++|
T Consensus 58 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 58 KAEEQVEEARDQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555666667777777777777655432 233322 12445677777777666666654
No 23
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.53 E-value=4.1e+02 Score=27.03 Aligned_cols=58 Identities=22% Similarity=0.319 Sum_probs=34.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhccChhhHHHHHHHhhHHHHH
Q 016652 137 LPFEFVALEACLEAACSCLENEAKTLEQEAHPA---LDKLTSKISTLNLERVRQIKSRLVAI 195 (385)
Q Consensus 137 LPFEFRALEa~Le~vcs~Le~e~~~LE~~a~~a---LdeLtskVst~nLErLR~lKsrL~~L 195 (385)
-|.|+--.|-.|..++.....++..+......+ ...|.+||-++++|- -+.++||.+|
T Consensus 99 Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~El-Er~rkRle~L 159 (338)
T KOG3647|consen 99 RPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAEL-ERTRKRLEAL 159 (338)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 478887777777777777666665544443333 456777887765542 2333444443
No 24
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=26.34 E-value=3.8e+02 Score=25.04 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=46.8
Q ss_pred CCCCCch--hHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhccC--hhhHHHHHHHhhHHHHHHHHHHHHHHH
Q 016652 133 GSKVLPF--EFVALEACLEAA---CSCLENEAKTLEQEAHPALDKLTSKIS--TLNLERVRQIKSRLVAITGRVQKVRDE 205 (385)
Q Consensus 133 ~~~~LPF--EFRALEa~Le~v---cs~Le~e~~~LE~~a~~aLdeLtskVs--t~nLErLR~lKsrL~~L~~RVqkVRd~ 205 (385)
.....|| .|+-++.++... -+..-.++..|+.... =+++|+..+- ..+++...+++..+..|..+...|||.
T Consensus 79 S~~K~Pf~~~~k~~~~ifkegg~d~~k~~~~l~~L~e~sn-ki~kLe~~~k~L~d~Iv~~~~i~e~IKd~de~L~~I~d~ 157 (163)
T PF03233_consen 79 SKSKSPFESFFKDLSKIFKEGGGDKQKQLKLLPTLEEISN-KIRKLETEVKKLKDNIVTEKLIEELIKDFDERLKEIRDK 157 (163)
T ss_pred ccCCCcHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHH-HHHHHHHHHHhHhhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 3455787 467777777766 3333334444544444 2333333221 123666778888888999999999998
Q ss_pred HHHh
Q 016652 206 LEHL 209 (385)
Q Consensus 206 LEeL 209 (385)
|..+
T Consensus 158 iK~I 161 (163)
T PF03233_consen 158 IKKI 161 (163)
T ss_pred HHhh
Confidence 8765
No 25
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=25.76 E-value=1.2e+02 Score=24.58 Aligned_cols=34 Identities=21% Similarity=0.390 Sum_probs=22.8
Q ss_pred cChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHH
Q 016652 177 ISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDE 214 (385)
Q Consensus 177 Vst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDDe 214 (385)
++...-+++-++-.+..+++.||+ .||.+||+|.
T Consensus 36 ls~~d~~~L~~L~~~a~rm~eRI~----tLE~ILd~e~ 69 (75)
T TIGR02976 36 LSTDDQALLQELYAKADRLEERID----TLERILDAEH 69 (75)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHcCCC
Confidence 455555556666666666777764 7888998864
No 26
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=24.89 E-value=5.7e+02 Score=25.51 Aligned_cols=87 Identities=20% Similarity=0.259 Sum_probs=65.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhh-HHHHHHHHHHHHHHHHHHhhCCHHH
Q 016652 137 LPFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKS-RLVAITGRVQKVRDELEHLLDDDED 215 (385)
Q Consensus 137 LPFEFRALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKs-rL~~L~~RVqkVRd~LEeLLDDDeD 215 (385)
+=-|++..|--.+.-.+.|+.++..|+..+..+-++|.- ++|..= +=-.+|+ .+..|...++.+++.-.+=||+=..
T Consensus 68 ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~-L~TYkD-~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e 145 (258)
T PF15397_consen 68 AKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNF-LSTYKD-HEYPVKAVQIANLVRQLQQLKDSQQDELDELNE 145 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999988887742 111111 1125666 6888888889999988888888788
Q ss_pred Hhhhhcccch
Q 016652 216 MAEMYLTEKL 225 (385)
Q Consensus 216 MA~MYLT~K~ 225 (385)
|..|-+....
T Consensus 146 ~~~~el~~l~ 155 (258)
T PF15397_consen 146 MRQMELASLS 155 (258)
T ss_pred HHHHHHHHHH
Confidence 8777665543
No 27
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=24.65 E-value=1.4e+02 Score=24.57 Aligned_cols=45 Identities=20% Similarity=0.507 Sum_probs=36.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHhhhhcccchhh
Q 016652 182 LERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQ 227 (385)
Q Consensus 182 LErLR~lKsrL~~L~~RVqkVRd~LEeLLDDDeDMA~MYLT~K~~~ 227 (385)
++++..++..|..|.+||..|+.+-+.| +.+..+-..|+..-...
T Consensus 22 i~ei~~LQ~sL~~L~~Rve~Vk~E~~kL-~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 22 IQEILELQDSLEALSDRVEEVKEENEKL-ESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 4567789999999999999999988765 67777788888776543
No 28
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=24.12 E-value=1e+02 Score=33.02 Aligned_cols=92 Identities=15% Similarity=0.247 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHhhhhccc
Q 016652 144 LEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTE 223 (385)
Q Consensus 144 LEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDDeDMA~MYLT~ 223 (385)
|||.--.+...+=.++..|.+.|..+..||-.....-+. |+-.|+.|+.+|.-+|..+--..|++==.|-.|..-+=+-
T Consensus 26 LecvtN~TLaniIRQLsSLSKhAEdIFGELf~da~~f~~-R~NSLQ~RIDRL~vkVtqLDs~~eevsLqdinmrKAFkSS 104 (518)
T KOG1830|consen 26 LECVTNITLANIIRQLSSLSKHAEDIFGELFNDANNFNH-RANSLQERIDRLAVKVTQLDSTVEEVSLQDINMRKAFKSS 104 (518)
T ss_pred eeeecchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHhhhhhccCCcccccccchhHHHhhhhhh
Confidence 677767777777778888999999999999876655443 4678888888888888888888888888888898888888
Q ss_pred chhhhc-cccccCC
Q 016652 224 KLMQQL-ENSSTSS 236 (385)
Q Consensus 224 K~~~~~-~~~~~~~ 236 (385)
+...|+ ++-++.+
T Consensus 105 tvqDQqifdR~tlP 118 (518)
T KOG1830|consen 105 TVQDQQIFDRNTLP 118 (518)
T ss_pred hhhhhhhhccccCC
Confidence 877654 4444444
No 29
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=23.98 E-value=3.8e+02 Score=21.48 Aligned_cols=21 Identities=14% Similarity=0.362 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 016652 154 CLENEAKTLEQEAHPALDKLT 174 (385)
Q Consensus 154 ~Le~e~~~LE~~a~~aLdeLt 174 (385)
.++.-+..++..+.|+.++.+
T Consensus 30 ~~~~ti~~l~~~~~~i~~e~~ 50 (90)
T PF06103_consen 30 EVNKTIDTLQEQVDPITKEIN 50 (90)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 334445555556666655544
No 30
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=23.71 E-value=4.5e+02 Score=27.04 Aligned_cols=51 Identities=12% Similarity=0.225 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Q 016652 161 TLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLD 211 (385)
Q Consensus 161 ~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLD 211 (385)
.+......+.++.-..+.-..=..|..+-+||.+|+.||+.++.+|.++-.
T Consensus 267 ~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 267 RLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344444444444433322222234567788999999999999999988754
No 31
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=23.64 E-value=6e+02 Score=23.87 Aligned_cols=32 Identities=31% Similarity=0.349 Sum_probs=18.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016652 136 VLPFEFVALEACLEAACSCLENEAKTLEQEAH 167 (385)
Q Consensus 136 ~LPFEFRALEa~Le~vcs~Le~e~~~LE~~a~ 167 (385)
.|-.=|.=|...-+.+-+.|+.|.+.|+.++.
T Consensus 106 eL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~ 137 (171)
T PF04799_consen 106 ELSSTFARLCQQVDQTKNELEDEIKQLEKEIQ 137 (171)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777666665543
No 32
>KOG3958 consensus Putative dynamitin [Cytoskeleton]
Probab=23.02 E-value=2e+02 Score=29.61 Aligned_cols=19 Identities=26% Similarity=0.160 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016652 150 AACSCLENEAKTLEQEAHP 168 (385)
Q Consensus 150 ~vcs~Le~e~~~LE~~a~~ 168 (385)
+-+..||.++..||+++.-
T Consensus 191 akVA~LE~Rlt~lE~vvg~ 209 (371)
T KOG3958|consen 191 AKVAELEKRLTELETVVGC 209 (371)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 4566789999999988764
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=22.23 E-value=6.1e+02 Score=25.48 Aligned_cols=7 Identities=43% Similarity=0.444 Sum_probs=3.7
Q ss_pred HHHHHhh
Q 016652 63 ELQSRIL 69 (385)
Q Consensus 63 eL~~RL~ 69 (385)
+|.+++.
T Consensus 79 EL~~~I~ 85 (325)
T PF08317_consen 79 ELKKYIS 85 (325)
T ss_pred HHHHHHH
Confidence 5555554
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=21.43 E-value=4.7e+02 Score=25.76 Aligned_cols=37 Identities=19% Similarity=0.420 Sum_probs=21.9
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHh
Q 016652 181 NLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMA 217 (385)
Q Consensus 181 nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDDeDMA 217 (385)
..+.++.+...+.....|....+++|.++++--+-+.
T Consensus 87 ~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~ 123 (239)
T COG1579 87 DERELRALNIEIQIAKERINSLEDELAELMEEIEKLE 123 (239)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666665444433
No 35
>PF14125 DUF4292: Domain of unknown function (DUF4292)
Probab=20.84 E-value=78 Score=29.39 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=25.5
Q ss_pred eecCCeEEeec------ccchheeecCceeeecCCCC
Q 016652 25 LGRERAIVINL------EHIKAIITAQEVLLMNSRDP 55 (385)
Q Consensus 25 LvRe~AILVNL------e~IRAIItaDeVLLfd~~~~ 55 (385)
+-|+.+|-|++ +-.|++||.|.|.+.|..+.
T Consensus 31 ~~kd~~I~is~~~~lGievar~~iTpd~v~~~d~~~k 67 (210)
T PF14125_consen 31 MKKDSRIWISVTPFLGIEVARALITPDSVQFYDRLNK 67 (210)
T ss_pred EecCCEEEEEeccccCceEEEEEEcCceEEEEEccCC
Confidence 34678888888 66799999999999997654
Done!