Query 016652
Match_columns 385
No_of_seqs 193 out of 324
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 2.6E-63 8.8E-68 476.7 21.1 206 1-377 41-251 (261)
2 3nvo_A Zinc transport protein 84.3 5.2 0.00018 36.6 9.7 71 142-213 147-217 (264)
3 3swf_A CGMP-gated cation chann 84.0 3.5 0.00012 32.4 7.0 51 148-206 5-55 (74)
4 4egw_A Magnesium transport pro 77.3 45 0.0015 30.8 14.5 70 143-212 157-226 (280)
5 2iub_A CORA, divalent cation t 70.7 22 0.00076 34.4 10.1 71 143-213 181-251 (363)
6 3swy_A Cyclic nucleotide-gated 68.2 12 0.00042 26.8 5.6 44 148-199 3-46 (46)
7 4ev6_A Magnesium transport pro 62.1 36 0.0012 32.5 9.6 69 143-211 157-225 (339)
8 2bbh_A Divalent cation transpo 59.9 26 0.0009 31.9 7.8 69 145-213 174-242 (269)
9 2hn1_A CORA, magnesium and cob 52.1 28 0.00095 31.8 6.6 70 143-213 173-242 (266)
10 3p8c_D Wiskott-aldrich syndrom 48.8 51 0.0018 31.7 8.0 57 143-207 25-81 (279)
11 3v86_A De novo design helix; c 47.4 31 0.0011 21.6 4.0 25 185-209 2-26 (27)
12 3ck6_A Putative membrane trans 36.6 66 0.0023 28.9 6.5 64 144-213 138-201 (252)
13 3hhm_B NISH2 P85alpha; PI3KCA, 33.1 2.1E+02 0.0073 28.2 9.9 67 141-208 160-230 (373)
14 3zcc_A HAMP, osmolarity sensor 33.1 1.4E+02 0.0047 21.9 6.9 73 138-210 36-111 (114)
15 3r2p_A Apolipoprotein A-I; amp 24.6 3.2E+02 0.011 23.7 8.7 33 144-176 98-130 (185)
16 4dnd_A Syntaxin-10, SYN10; str 23.1 3.4E+02 0.011 22.8 9.3 64 140-206 64-128 (130)
17 3mq9_A Bone marrow stromal ant 22.9 2.4E+02 0.0082 27.6 8.3 23 185-207 445-467 (471)
18 1skv_A ORF D-63, hypothetical 20.7 2.9E+02 0.0099 21.2 9.1 50 145-194 4-54 (69)
19 3ljm_A Coil Ser L9C; de novo d 20.4 1.5E+02 0.0052 19.0 4.0 19 147-165 5-23 (31)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-63 Score=476.72 Aligned_cols=206 Identities=28% Similarity=0.400 Sum_probs=190.4
Q ss_pred CccCCCCCCcccccCCCC-CCCceeeecCCeEEeecccchheeecCceeeecCCCCCch----HHHHHHHHHhhcccccc
Q 016652 1 MRRTGLPARDLRILDPLL-SYPSTVLGRERAIVINLEHIKAIITAQEVLLMNSRDPSVV----PFVEELQSRILCHYQAT 75 (385)
Q Consensus 1 mrr~gL~aRDLR~LDp~l-S~pstILvRe~AILVNLe~IRAIItaDeVLLfd~~~~~v~----~Fv~eL~~RL~~~~~~~ 75 (385)
|+++||+|||||+|||++ +++|+|++|++||||||+|||||||+|+|||||+.++.+. .|+++|+.||...+
T Consensus 41 ~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~~~~~~~~~~f~~~l~~~l~~~~--- 117 (261)
T 3rkg_A 41 LTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTNPSAAAKLSVLMYDLESKLSSTK--- 117 (261)
T ss_dssp HHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSCHHHHHHHHHHHHHHHHHHHCSS---
T ss_pred HHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCCchhhhhHHHHHHHHHHHhccCC---
Confidence 689999999999999996 5666799999999999999999999999999999998775 59999999997420
Q ss_pred ccccccCCCCCccccccCCCCCCCCCCCCCCCCCCCCCccchhhhhhcccccccccCCCCCCchhHHHHHHHHHHHHHHH
Q 016652 76 KSQEINGEDSNWTNLYDLEAPQSRTSSPQNFSGGFPQFEDENEERKEDGKQSLENRDGSKVLPFEFVALEACLEAACSCL 155 (385)
Q Consensus 76 ~~~~~~g~~~~~~~~~~~~~p~~~~~s~~~~~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~LPFEFRALEa~Le~vcs~L 155 (385)
...+|||||||||||++||++|
T Consensus 118 ----------------------------------------------------------~~~lPFEfraLEa~L~~v~~~L 139 (261)
T 3rkg_A 118 ----------------------------------------------------------NNSQFYEHRALESIFINVMSAL 139 (261)
T ss_dssp ----------------------------------------------------------CCSSCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------CCCCChHHHHHHHHHHHHHHHH
Confidence 1248999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCHHHHhhhhcccchhhhccccccC
Q 016652 156 ENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLMQQLENSSTS 235 (385)
Q Consensus 156 e~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDDeDMA~MYLT~K~~~~~~~~~~~ 235 (385)
+++++.+++.++++|++|+++|++.+|++||..|++|++|.+||++||++|+++||||+||++||||+|+.
T Consensus 140 e~e~~~l~~~~~~~L~~L~~~i~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~--------- 210 (261)
T 3rkg_A 140 ETDFKLHSQICIQILNDLENEVNRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKS--------- 210 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCC---------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCC---------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999841
Q ss_pred CCCCCCCcchHHHhhhccccccchhhhhccccccccccchhhhhhcccchhhhhhhhcCCCCCccccccccccccccccc
Q 016652 236 SINERDDMDDEVLQSNMNNRHLKFCFFFVNCLFIFFPSMRLNLLSCFRTTAEISLEATGGSTSYEADFQNTENIHDNLFT 315 (385)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (385)
T Consensus 211 -------------------------------------------------------------------------------- 210 (261)
T 3rkg_A 211 -------------------------------------------------------------------------------- 210 (261)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCCCCcccccccccCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHHhhhcccccchH
Q 016652 316 QNIHSRASHGTRTSTTHSAISKHLDVEELEMLLEAYFVQIDGTLNKLSTVRNSISPLNFGLL 377 (385)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~dvEelEmLLEaYf~qidgtlnkl~~lreyiddtE~~~~ 377 (385)
...|+||+|||||+||+|+|+++|++.+|++||||||..+-
T Consensus 211 ---------------------~~~d~eElEmLLE~Y~~q~d~~~~~~~~L~~~I~~TEe~i~ 251 (261)
T 3rkg_A 211 ---------------------PKDNFSDLEMLIETYYTQCDEYVQQSESLIQDIKSTEEIVN 251 (261)
T ss_dssp ---------------------TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13488999999999999999999999999999999998764
No 2
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=84.30 E-value=5.2 Score=36.57 Aligned_cols=71 Identities=13% Similarity=0.087 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCH
Q 016652 142 VALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDD 213 (385)
Q Consensus 142 RALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDD 213 (385)
..|-++|..++..+-.-+..++..+..+=+.+..+ ....+.++-.+|+.|..|..-+.-.|+++..|...+
T Consensus 147 ~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~-~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 217 (264)
T 3nvo_A 147 GWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ-QIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASER 217 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCC
Confidence 45666777777766666666666544433333233 455788999999999999999999999999998764
No 3
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=84.04 E-value=3.5 Score=32.39 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 016652 148 LEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDEL 206 (385)
Q Consensus 148 Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~L 206 (385)
++.-+..||+-+..|+.....+|.+.++. =..||+|++.|+.++..+++.-
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ss--------Q~KLKqRit~LE~~~~~~~~~~ 55 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESM--------QQKLKQRLTKVEKFLKPLIDTE 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcccCCCc
Confidence 56677888888888888888888888763 2579999999999988765543
No 4
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=77.27 E-value=45 Score=30.76 Aligned_cols=70 Identities=21% Similarity=0.171 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCC
Q 016652 143 ALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDD 212 (385)
Q Consensus 143 ALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDD 212 (385)
+|=++|..++..+-.-+..++..+..+=+.+-.+.+...++++..+|+.|..|..-+.-.|+.+..|...
T Consensus 157 ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~~~~l~~i~~lrr~l~~lrr~l~p~~~vl~~L~~~ 226 (280)
T 4egw_A 157 LLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKRK 226 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 3444555555555555555555554444455556677889999999999999999999999999988643
No 5
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=70.74 E-value=22 Score=34.43 Aligned_cols=71 Identities=17% Similarity=0.210 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCH
Q 016652 143 ALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDD 213 (385)
Q Consensus 143 ALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDD 213 (385)
+|-++|..++..+-.-+..++..+..+=+++-.+-+...++++..+|+.+..+..-+...|+.|..|...+
T Consensus 181 ll~~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 251 (363)
T 2iub_A 181 LLYSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 251 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34455666666665555555555444444444444456799999999999999999999999999998653
No 6
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=68.22 E-value=12 Score=26.76 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHH
Q 016652 148 LEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRV 199 (385)
Q Consensus 148 Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RV 199 (385)
++.-+..||+-+..|......+|.+.++.- ..+|+|++.++.+|
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~ssq--------~KlKqRit~lE~~v 46 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNATQ--------MKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcC
Confidence 466677888888888888888888887532 57889999888764
No 7
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=62.06 E-value=36 Score=32.52 Aligned_cols=69 Identities=22% Similarity=0.171 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhC
Q 016652 143 ALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLD 211 (385)
Q Consensus 143 ALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLD 211 (385)
+|-++|..++..+..-+..++.....+=+.+-.+-+...++++..+|+.|..+..-+...|+.+..+..
T Consensus 157 ll~~lld~ivd~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~~~~~vl~~L~~ 225 (339)
T 4ev6_A 157 LLYHILNEITRSYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLIANRDVLVLLKR 225 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhh
Confidence 455667777766666666666664443344444456678999999999999999999999999888764
No 8
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=59.88 E-value=26 Score=31.88 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCH
Q 016652 145 EACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDD 213 (385)
Q Consensus 145 Ea~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDD 213 (385)
-++|..++..+-.-+..++..+..+=+.+-.+-+...++++-.+|+.|..|..-+.-.|++|..|+..+
T Consensus 174 ~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (269)
T 2bbh_A 174 YSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIWPLREVLSSLYRDV 242 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555555544444444444333222222222346789999999999999999999999999998654
No 9
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=52.09 E-value=28 Score=31.81 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCH
Q 016652 143 ALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDD 213 (385)
Q Consensus 143 ALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDD 213 (385)
+|-++|..++..+-.-+..++..+..+=+.+-.+-+ ..++++-.+|+.|..|..-+.-.|++|..|+..+
T Consensus 173 ll~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~-~~l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~ 242 (266)
T 2hn1_A 173 LAYTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS-TLIGKIHSLKREILAFRNAVWPLRDVLSFFTRVE 242 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566666666655555566555554444433334 6788899999999999999999999999998653
No 10
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=48.78 E-value=51 Score=31.67 Aligned_cols=57 Identities=14% Similarity=0.223 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 016652 143 ALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELE 207 (385)
Q Consensus 143 ALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LE 207 (385)
.||++-..+...+=.++..|-..|..+..+|...+ ..+..|+..|..|++.+...+.
T Consensus 25 eLe~V~n~tL~gilRQL~dLs~~A~dIF~eL~~e~--------~~~~~R~~~L~~RI~~L~~~v~ 81 (279)
T 3p8c_D 25 ELECVTNISLANIIRQLSSLSKYAEDIFGELFNEA--------HSFSFRVNSLQERVDRLSVSVT 81 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhcc
Confidence 48888888888899999999999999999998764 3445555555555555555553
No 11
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=47.44 E-value=31 Score=21.60 Aligned_cols=25 Identities=32% Similarity=0.591 Sum_probs=21.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHh
Q 016652 185 VRQIKSRLVAITGRVQKVRDELEHL 209 (385)
Q Consensus 185 LR~lKsrL~~L~~RVqkVRd~LEeL 209 (385)
+-++|....++.+.|+.++|+..+|
T Consensus 2 vyqlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 2 VYQLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHhcc
Confidence 4578889999999999999988765
No 12
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=36.63 E-value=66 Score=28.91 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhhCCH
Q 016652 144 LEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDD 213 (385)
Q Consensus 144 LEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLErLR~lKsrL~~L~~RVqkVRd~LEeLLDDD 213 (385)
|-++|..++..+-.-+..++.. +++|+.. ...++++..+|+.+..|..-+...|++|..|+..+
T Consensus 138 l~~lld~ivd~y~~~l~~l~~~----id~lE~~--~~~~~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~ 201 (252)
T 3ck6_A 138 LNQIIEGLNGKIDLYLDTIEET----LNEFDVN--DESTYNHIAAQKALISIKRFIRPQQYAIRDLIESE 201 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHTCCTT--CGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3466666666555544444433 5555554 24578889999999999999999999999997543
No 13
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=33.15 E-value=2.1e+02 Score=28.16 Aligned_cols=67 Identities=18% Similarity=0.349 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHHH----HHHHhhHHHHHHHHHHHHHHHHHH
Q 016652 141 FVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKISTLNLER----VRQIKSRLVAITGRVQKVRDELEH 208 (385)
Q Consensus 141 FRALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst~nLEr----LR~lKsrL~~L~~RVqkVRd~LEe 208 (385)
-.|+| |+..+.+.++.+....|+-....++.....-....+++ ...+|+||.+|....+++.+.|+.
T Consensus 160 ~~a~~-af~~~~~~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~ 230 (373)
T 3hhm_B 160 RTAIE-AFNETIKIFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKK 230 (373)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777 67777888888888888776666666554434333333 346888888887777766666654
No 14
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=33.08 E-value=1.4e+02 Score=21.94 Aligned_cols=73 Identities=14% Similarity=0.118 Sum_probs=38.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCh--hhHHHHHHHhhH-HHHHHHHHHHHHHHHHHhh
Q 016652 138 PFEFVALEACLEAACSCLENEAKTLEQEAHPALDKLTSKIST--LNLERVRQIKSR-LVAITGRVQKVRDELEHLL 210 (385)
Q Consensus 138 PFEFRALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtskVst--~nLErLR~lKsr-L~~L~~RVqkVRd~LEeLL 210 (385)
+=|+..|-..+......|..........+..+-.+|.+-++. ..++.+..-... +..+...+..+...++++|
T Consensus 36 ~dEi~~l~~~~n~m~~~l~~~~~~~~~~~~~~shel~tpl~~i~~~~e~l~~~~~~~~~~i~~~~~~l~~~i~~ll 111 (114)
T 3zcc_A 36 ADEIGILAKSIERLRRSLKQLADDGTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAIIEQFI 111 (114)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcChHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 558888888888888888776666555555544444432211 111111111112 2455555555555665555
No 15
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=24.58 E-value=3.2e+02 Score=23.74 Aligned_cols=33 Identities=15% Similarity=0.204 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016652 144 LEACLEAACSCLENEAKTLEQEAHPALDKLTSK 176 (385)
Q Consensus 144 LEa~Le~vcs~Le~e~~~LE~~a~~aLdeLtsk 176 (385)
|+-.+......+...+..+.....|..++|..+
T Consensus 98 l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~ 130 (185)
T 3r2p_A 98 VQPYLDDFQKKWQEEMELYRQKVEPLRAELQEG 130 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555443
No 16
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=23.14 E-value=3.4e+02 Score=22.82 Aligned_cols=64 Identities=17% Similarity=0.159 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccChhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 016652 140 EFVALEACLEAACSCLENEAKTLEQEAHPALDKLTS-KISTLNLERVRQIKSRLVAITGRVQKVRDEL 206 (385)
Q Consensus 140 EFRALEa~Le~vcs~Le~e~~~LE~~a~~aLdeLts-kVst~nLErLR~lKsrL~~L~~RVqkVRd~L 206 (385)
||.-+=.=|..+|..++..+.+|+..+.-+=..=.+ +|+...+ -.-|+-+.++.++|..++++|
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei---~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDL---QERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 666677778888888888888888877654321111 3444333 344555777888888888765
No 17
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=22.88 E-value=2.4e+02 Score=27.58 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=9.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q 016652 185 VRQIKSRLVAITGRVQKVRDELE 207 (385)
Q Consensus 185 LR~lKsrL~~L~~RVqkVRd~LE 207 (385)
+..+-..++.+.++++..+-+++
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 445 VEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444443
No 18
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=20.67 E-value=2.9e+02 Score=21.16 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhccChhhHHHHHHHhhHHHH
Q 016652 145 EACLEAACSCLENEAKTLEQEAHPA-LDKLTSKISTLNLERVRQIKSRLVA 194 (385)
Q Consensus 145 Ea~Le~vcs~Le~e~~~LE~~a~~a-LdeLtskVst~nLErLR~lKsrL~~ 194 (385)
|+-.......|+++.+.|=..++.+ +|-++.+.+..++++-.-+.+++.+
T Consensus 4 ev~~~elF~eLD~diReLLSlvheIKID~It~n~~kekvekAlfLsq~Iqa 54 (69)
T 1skv_A 4 EVLEKELFEMLDEDVRELLSLIHEIKIDRITGNMDKQKLGKAYFQVQKIEA 54 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHheeeeccCCCHHHHHHHHHHHHHHHH
Confidence 5667778888999999999888887 6888888888888887766666544
No 19
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=20.39 E-value=1.5e+02 Score=18.98 Aligned_cols=19 Identities=37% Similarity=0.725 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 016652 147 CLEAACSCLENEAKTLEQE 165 (385)
Q Consensus 147 ~Le~vcs~Le~e~~~LE~~ 165 (385)
+|+.-|..||+.+..||+.
T Consensus 5 alekkcaalesklqalekk 23 (31)
T 3ljm_A 5 ALEKKCAALESKLQALEKK 23 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556777788877776664
Done!