Query 016653
Match_columns 385
No_of_seqs 185 out of 779
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 17:12:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_R RPN7, 26S proteasome re 100.0 4.4E-77 1.5E-81 598.3 20.9 384 2-385 15-423 (429)
2 3txn_A 26S proteasome regulato 100.0 1.7E-46 6E-51 369.0 26.4 274 101-384 103-384 (394)
3 4b4t_P 26S proteasome regulato 100.0 2.7E-34 9.1E-39 288.9 13.8 303 78-384 116-434 (445)
4 4b4t_Q 26S proteasome regulato 100.0 4.3E-30 1.5E-34 253.3 27.1 282 95-384 133-424 (434)
5 4b4t_O 26S proteasome regulato 99.9 1.5E-20 5E-25 185.9 20.5 259 105-370 84-368 (393)
6 3t5x_A PCI domain-containing p 99.6 9.4E-15 3.2E-19 131.2 15.7 173 171-357 11-195 (203)
7 4b4t_S RPN3, 26S proteasome re 99.6 1.4E-14 4.9E-19 145.2 17.6 215 133-354 230-447 (523)
8 1ufm_A COP9 complex subunit 4; 99.6 1.1E-15 3.7E-20 117.2 4.5 72 287-358 8-79 (84)
9 3t5v_B Nuclear mRNA export pro 99.3 7.6E-11 2.6E-15 117.6 19.2 237 112-355 141-429 (455)
10 3chm_A COP9 signalosome comple 98.5 5.4E-07 1.9E-11 77.8 10.0 99 250-358 60-160 (169)
11 1qqe_A Vesicular transport pro 98.2 0.00048 1.6E-08 63.8 23.9 188 92-285 72-274 (292)
12 4b0z_A RPN12, 26S proteasome r 98.1 9.6E-05 3.3E-09 67.0 14.9 198 140-353 13-227 (229)
13 3ro3_A PINS homolog, G-protein 97.9 0.00049 1.7E-08 55.7 16.1 115 88-202 40-157 (164)
14 4gcn_A Protein STI-1; structur 97.9 0.00019 6.3E-09 58.1 13.3 105 95-202 6-111 (127)
15 3gw4_A Uncharacterized protein 97.8 0.00062 2.1E-08 58.2 15.8 129 75-203 44-176 (203)
16 3ro3_A PINS homolog, G-protein 97.7 0.00088 3E-08 54.2 13.6 108 95-202 7-117 (164)
17 2ifu_A Gamma-SNAP; membrane fu 97.6 0.0044 1.5E-07 57.6 19.4 125 78-203 57-184 (307)
18 2ifu_A Gamma-SNAP; membrane fu 97.5 0.012 4E-07 54.7 20.7 123 78-201 97-222 (307)
19 3ro2_A PINS homolog, G-protein 97.4 0.0079 2.7E-07 54.6 17.7 126 77-202 163-291 (338)
20 4gco_A Protein STI-1; structur 97.4 0.0017 5.9E-08 52.3 11.6 102 92-202 8-109 (126)
21 1elr_A TPR2A-domain of HOP; HO 97.4 0.0036 1.2E-07 48.7 13.0 103 97-202 4-107 (131)
22 3qky_A Outer membrane assembly 97.4 0.026 8.8E-07 50.5 20.3 105 97-204 15-127 (261)
23 3sf4_A G-protein-signaling mod 97.4 0.024 8.2E-07 53.3 20.7 129 75-203 205-336 (406)
24 4a1s_A PINS, partner of inscut 97.4 0.0044 1.5E-07 59.1 15.6 123 80-202 206-331 (411)
25 3ro2_A PINS homolog, G-protein 97.3 0.0065 2.2E-07 55.2 16.1 127 77-203 203-332 (338)
26 3sf4_A G-protein-signaling mod 97.3 0.0091 3.1E-07 56.3 17.4 126 77-202 167-295 (406)
27 3q15_A PSP28, response regulat 97.3 0.0085 2.9E-07 57.1 17.1 150 74-226 158-311 (378)
28 1wi9_A Protein C20ORF116 homol 97.3 0.00051 1.7E-08 49.7 6.2 58 298-355 10-67 (72)
29 3ulq_A Response regulator aspa 97.3 0.0035 1.2E-07 59.8 14.1 110 93-202 139-252 (383)
30 2xev_A YBGF; tetratricopeptide 97.3 0.002 6.9E-08 50.7 10.3 104 98-204 3-106 (129)
31 3q15_A PSP28, response regulat 97.3 0.0047 1.6E-07 58.9 14.7 110 93-202 137-250 (378)
32 3edt_B KLC 2, kinesin light ch 97.3 0.013 4.3E-07 52.0 16.7 110 94-203 40-156 (283)
33 3gw4_A Uncharacterized protein 97.3 0.0034 1.2E-07 53.4 12.3 107 96-202 25-135 (203)
34 4a1s_A PINS, partner of inscut 97.2 0.0088 3E-07 57.0 15.7 128 77-204 243-373 (411)
35 3nf1_A KLC 1, kinesin light ch 97.2 0.011 3.8E-07 53.5 15.4 111 93-203 65-182 (311)
36 3edt_B KLC 2, kinesin light ch 97.2 0.011 3.6E-07 52.5 15.0 109 94-202 82-197 (283)
37 3nf1_A KLC 1, kinesin light ch 97.1 0.01 3.5E-07 53.6 15.0 109 94-202 108-223 (311)
38 2qfc_A PLCR protein; TPR, HTH, 97.1 0.0039 1.3E-07 57.4 11.8 96 98-193 156-255 (293)
39 3ulq_A Response regulator aspa 97.1 0.015 5.2E-07 55.3 16.3 150 74-226 160-314 (383)
40 3uq3_A Heat shock protein STI1 97.1 0.075 2.6E-06 46.3 19.7 102 97-202 5-107 (258)
41 3u3w_A Transcriptional activat 97.0 0.0072 2.5E-07 55.6 13.0 106 96-201 154-264 (293)
42 3rkv_A Putative peptidylprolyl 97.0 0.008 2.7E-07 49.8 11.8 101 96-202 10-125 (162)
43 3u4t_A TPR repeat-containing p 96.9 0.11 3.7E-06 46.0 19.5 98 99-202 5-102 (272)
44 3vtx_A MAMA; tetratricopeptide 96.9 0.061 2.1E-06 44.9 16.8 97 97-202 5-101 (184)
45 2dba_A Smooth muscle cell asso 96.9 0.0086 3E-07 47.9 10.8 100 97-202 28-127 (148)
46 4ga2_A E3 SUMO-protein ligase 96.8 0.0069 2.4E-07 50.1 10.0 96 95-199 29-124 (150)
47 3qky_A Outer membrane assembly 96.8 0.014 4.7E-07 52.4 12.7 108 97-204 52-178 (261)
48 3upv_A Heat shock protein STI1 96.8 0.015 5.2E-07 45.7 11.5 96 97-201 4-99 (126)
49 2qfc_A PLCR protein; TPR, HTH, 96.8 0.016 5.5E-07 53.1 13.1 105 98-202 116-224 (293)
50 1qqe_A Vesicular transport pro 96.8 0.047 1.6E-06 50.1 16.3 127 76-202 96-227 (292)
51 3gyz_A Chaperone protein IPGC; 96.7 0.014 4.9E-07 48.7 11.3 100 94-202 33-132 (151)
52 2ho1_A Type 4 fimbrial biogene 96.7 0.25 8.7E-06 43.0 20.2 99 97-202 71-169 (252)
53 4i17_A Hypothetical protein; T 96.7 0.1 3.5E-06 45.3 17.1 100 98-202 43-145 (228)
54 2l6j_A TPR repeat-containing p 96.7 0.002 7E-08 49.2 5.2 96 98-196 5-100 (111)
55 3sz7_A HSC70 cochaperone (SGT) 96.6 0.022 7.6E-07 47.1 11.7 98 96-202 10-107 (164)
56 3q49_B STIP1 homology and U bo 96.6 0.025 8.6E-07 44.7 11.6 97 97-202 9-105 (137)
57 3u3w_A Transcriptional activat 96.6 0.017 6E-07 52.9 11.5 104 99-202 117-224 (293)
58 2lni_A Stress-induced-phosphop 96.5 0.015 5.1E-07 45.4 9.5 98 96-202 15-112 (133)
59 1elw_A TPR1-domain of HOP; HOP 96.5 0.033 1.1E-06 42.1 11.1 97 97-202 4-100 (118)
60 1a17_A Serine/threonine protei 96.5 0.036 1.2E-06 45.1 11.9 98 96-202 12-109 (166)
61 2vyi_A SGTA protein; chaperone 96.5 0.045 1.5E-06 42.1 11.9 99 95-202 10-108 (131)
62 2c2l_A CHIP, carboxy terminus 96.4 0.026 9E-07 51.8 11.9 95 98-201 5-99 (281)
63 2kck_A TPR repeat; tetratricop 96.4 0.021 7.2E-07 42.9 9.3 100 98-204 7-107 (112)
64 1hh8_A P67PHOX, NCF-2, neutrop 96.4 0.03 1E-06 48.0 11.3 104 97-203 37-150 (213)
65 2fbn_A 70 kDa peptidylprolyl i 96.4 0.044 1.5E-06 46.8 12.2 100 97-202 38-150 (198)
66 4abn_A Tetratricopeptide repea 96.3 0.28 9.5E-06 48.5 19.5 96 97-202 102-207 (474)
67 4g1t_A Interferon-induced prot 96.3 0.019 6.4E-07 55.9 10.7 122 80-201 34-165 (472)
68 3uq3_A Heat shock protein STI1 96.2 0.51 1.7E-05 40.8 19.4 104 98-202 39-167 (258)
69 2vgx_A Chaperone SYCD; alterna 96.2 0.052 1.8E-06 44.6 11.3 99 95-202 19-117 (148)
70 1hz4_A MALT regulatory protein 96.2 0.15 5.1E-06 47.8 16.0 125 77-202 73-202 (373)
71 2yhc_A BAMD, UPF0169 lipoprote 96.2 0.08 2.7E-06 46.4 13.2 109 97-205 41-178 (225)
72 2fo7_A Synthetic consensus TPR 96.1 0.068 2.3E-06 41.0 11.1 96 98-202 2-97 (136)
73 1na0_A Designed protein CTPR3; 96.0 0.077 2.6E-06 40.3 11.0 97 97-202 9-105 (125)
74 2hr2_A Hypothetical protein; a 96.0 0.11 3.8E-06 44.0 12.5 104 97-201 11-129 (159)
75 3mv2_B Coatomer subunit epsilo 96.0 0.47 1.6E-05 44.5 18.1 179 98-288 101-293 (310)
76 2xcb_A PCRH, regulatory protei 96.0 0.088 3E-06 42.4 11.7 97 96-201 17-113 (142)
77 3ma5_A Tetratricopeptide repea 95.9 0.081 2.8E-06 40.1 10.5 71 97-170 7-77 (100)
78 4b4t_T 26S proteasome regulato 95.9 0.05 1.7E-06 50.4 10.8 153 178-338 63-225 (274)
79 2vq2_A PILW, putative fimbrial 95.9 0.66 2.2E-05 39.1 21.4 97 97-202 8-105 (225)
80 1hz4_A MALT regulatory protein 95.9 0.29 9.8E-06 45.8 16.5 126 78-203 114-244 (373)
81 2yhc_A BAMD, UPF0169 lipoprote 95.8 0.069 2.4E-06 46.8 11.1 105 98-205 5-127 (225)
82 2ho1_A Type 4 fimbrial biogene 95.8 0.84 2.9E-05 39.6 19.5 98 96-202 36-133 (252)
83 1p5q_A FKBP52, FK506-binding p 95.7 0.094 3.2E-06 49.4 12.2 101 96-202 146-258 (336)
84 1kt0_A FKBP51, 51 kDa FK506-bi 95.7 0.088 3E-06 52.0 12.2 101 96-202 267-379 (457)
85 2xev_A YBGF; tetratricopeptide 95.7 0.079 2.7E-06 41.2 9.8 67 97-163 39-105 (129)
86 2q7f_A YRRB protein; TPR, prot 95.6 0.81 2.8E-05 39.2 17.3 97 97-202 57-153 (243)
87 4i17_A Hypothetical protein; T 95.6 0.95 3.3E-05 38.9 19.2 98 98-203 8-105 (228)
88 3u4t_A TPR repeat-containing p 95.6 0.071 2.4E-06 47.2 10.4 98 99-202 39-136 (272)
89 3ieg_A DNAJ homolog subfamily 95.5 0.93 3.2E-05 41.1 18.2 101 98-203 155-263 (359)
90 1rz4_A Eukaryotic translation 95.5 0.044 1.5E-06 49.2 8.5 120 214-352 64-189 (226)
91 2e2e_A Formate-dependent nitri 95.5 0.1 3.6E-06 43.3 10.5 98 97-203 44-144 (177)
92 1ihg_A Cyclophilin 40; ppiase 95.5 0.1 3.5E-06 50.1 11.7 100 97-202 223-335 (370)
93 2fo7_A Synthetic consensus TPR 95.5 0.16 5.4E-06 38.8 10.8 96 97-201 35-130 (136)
94 3hym_B Cell division cycle pro 95.4 0.13 4.6E-06 46.5 11.7 96 97-201 125-220 (330)
95 3as5_A MAMA; tetratricopeptide 95.4 0.15 5.1E-06 41.6 11.0 95 98-201 43-137 (186)
96 3fp2_A TPR repeat-containing p 95.4 0.32 1.1E-05 47.6 15.1 96 97-201 310-405 (537)
97 1a17_A Serine/threonine protei 95.3 0.14 4.7E-06 41.4 10.4 97 97-200 47-143 (166)
98 4eqf_A PEX5-related protein; a 95.2 1.7 5.7E-05 40.2 19.0 104 97-203 99-206 (365)
99 1fch_A Peroxisomal targeting s 95.2 1.9 6.4E-05 39.6 20.4 62 98-162 99-160 (368)
100 3as5_A MAMA; tetratricopeptide 95.1 0.21 7.2E-06 40.7 11.2 96 97-201 76-171 (186)
101 1xnf_A Lipoprotein NLPI; TPR, 95.0 0.41 1.4E-05 42.0 13.4 99 95-202 41-139 (275)
102 1hxi_A PEX5, peroxisome target 95.0 0.17 5.9E-06 39.8 9.7 93 100-201 20-112 (121)
103 3hym_B Cell division cycle pro 94.9 1.1 3.9E-05 40.1 16.6 98 97-203 90-188 (330)
104 3k9i_A BH0479 protein; putativ 94.9 0.19 6.4E-06 38.9 9.6 67 94-163 24-90 (117)
105 2vq2_A PILW, putative fimbrial 94.8 1.5 5.2E-05 36.7 20.1 99 97-202 42-141 (225)
106 2pl2_A Hypothetical conserved 94.8 0.27 9.2E-06 42.7 11.5 94 97-200 118-211 (217)
107 2q7f_A YRRB protein; TPR, prot 94.8 0.18 6.1E-06 43.5 10.2 97 97-202 91-187 (243)
108 3n71_A Histone lysine methyltr 94.8 0.37 1.3E-05 48.3 13.6 119 81-200 333-461 (490)
109 4f3v_A ESX-1 secretion system 94.8 0.32 1.1E-05 45.0 12.3 121 97-227 102-222 (282)
110 3vtx_A MAMA; tetratricopeptide 94.8 0.44 1.5E-05 39.5 12.3 97 97-202 39-135 (184)
111 2y4t_A DNAJ homolog subfamily 94.7 0.85 2.9E-05 43.4 15.8 185 98-295 178-376 (450)
112 2y4t_A DNAJ homolog subfamily 94.7 0.32 1.1E-05 46.4 12.7 104 97-202 211-323 (450)
113 2kat_A Uncharacterized protein 94.7 0.31 1.1E-05 37.3 10.4 66 97-165 19-84 (115)
114 3mkr_A Coatomer subunit epsilo 94.6 2.6 8.7E-05 38.4 18.9 93 97-203 101-195 (291)
115 1xn7_A Hypothetical protein YH 94.6 0.037 1.3E-06 41.0 4.4 42 298-339 5-46 (78)
116 2xpi_A Anaphase-promoting comp 94.6 0.31 1.1E-05 48.6 12.8 97 97-202 407-503 (597)
117 2gw1_A Mitochondrial precursor 94.6 0.3 1E-05 47.3 12.4 96 96-201 5-100 (514)
118 1na3_A Designed protein CTPR2; 94.5 0.27 9.1E-06 35.3 9.2 64 97-163 9-72 (91)
119 4b4t_Q 26S proteasome regulato 94.5 0.33 1.1E-05 46.3 12.2 104 98-201 56-162 (434)
120 3cv0_A Peroxisome targeting si 94.4 0.27 9.1E-06 44.4 10.9 96 97-201 172-267 (327)
121 3urz_A Uncharacterized protein 94.3 0.48 1.6E-05 40.8 11.9 61 100-163 57-117 (208)
122 2k02_A Ferrous iron transport 94.3 0.046 1.6E-06 41.4 4.3 43 299-341 6-48 (87)
123 1hh8_A P67PHOX, NCF-2, neutrop 94.2 0.2 6.7E-06 42.7 9.1 94 98-203 7-100 (213)
124 3mkr_A Coatomer subunit epsilo 94.2 1 3.4E-05 41.2 14.4 99 97-203 130-229 (291)
125 4gcn_A Protein STI-1; structur 94.2 0.48 1.6E-05 37.4 10.7 78 97-177 42-123 (127)
126 3cv0_A Peroxisome targeting si 94.2 0.71 2.4E-05 41.5 13.1 92 102-202 141-234 (327)
127 2if4_A ATFKBP42; FKBP-like, al 94.1 0.15 5E-06 48.2 8.6 100 97-202 179-292 (338)
128 1elr_A TPR2A-domain of HOP; HO 94.1 0.25 8.6E-06 37.7 8.7 67 97-163 38-108 (131)
129 4eqf_A PEX5-related protein; a 94.1 0.28 9.5E-06 45.6 10.4 95 98-201 214-308 (365)
130 2kck_A TPR repeat; tetratricop 93.8 0.18 6E-06 37.5 7.0 65 98-163 41-106 (112)
131 1fch_A Peroxisomal targeting s 93.8 0.31 1.1E-05 45.0 10.2 96 97-201 217-312 (368)
132 4gco_A Protein STI-1; structur 93.8 1 3.5E-05 35.4 11.9 64 97-163 47-110 (126)
133 2v5f_A Prolyl 4-hydroxylase su 93.7 0.34 1.2E-05 37.1 8.7 65 99-163 7-75 (104)
134 3k9i_A BH0479 protein; putativ 93.7 0.14 4.8E-06 39.6 6.4 88 109-202 2-89 (117)
135 2pl2_A Hypothetical conserved 93.7 0.35 1.2E-05 42.0 9.7 97 97-202 39-146 (217)
136 3upv_A Heat shock protein STI1 93.4 0.48 1.7E-05 36.6 9.2 65 97-164 38-102 (126)
137 2vsy_A XCC0866; transferase, g 93.1 0.47 1.6E-05 47.6 10.9 97 97-202 57-156 (568)
138 4gyw_A UDP-N-acetylglucosamine 93.1 0.39 1.3E-05 50.5 10.5 94 98-200 44-137 (723)
139 2jt1_A PEFI protein; solution 93.0 0.12 4.1E-06 38.1 4.6 45 296-340 5-55 (77)
140 2dba_A Smooth muscle cell asso 93.0 0.76 2.6E-05 36.0 9.9 65 96-163 64-128 (148)
141 2vyi_A SGTA protein; chaperone 92.9 0.65 2.2E-05 35.2 9.2 64 97-163 46-109 (131)
142 3ieg_A DNAJ homolog subfamily 92.9 5.1 0.00018 36.0 24.0 103 97-202 37-148 (359)
143 3sz7_A HSC70 cochaperone (SGT) 92.8 0.58 2E-05 38.2 9.2 65 97-164 45-109 (164)
144 3urz_A Uncharacterized protein 92.8 0.88 3E-05 39.0 10.8 96 98-202 5-116 (208)
145 3fp2_A TPR repeat-containing p 92.7 0.37 1.3E-05 47.2 9.1 94 95-197 23-116 (537)
146 2xcb_A PCRH, regulatory protei 92.7 0.85 2.9E-05 36.4 9.9 65 97-164 52-116 (142)
147 1ouv_A Conserved hypothetical 92.6 0.89 3E-05 40.3 10.9 93 97-202 6-106 (273)
148 2xpi_A Anaphase-promoting comp 92.6 0.71 2.4E-05 45.9 11.2 102 97-201 441-543 (597)
149 1xnf_A Lipoprotein NLPI; TPR, 92.4 1.2 4.2E-05 38.8 11.5 61 98-162 112-172 (275)
150 4ga2_A E3 SUMO-protein ligase 92.4 0.096 3.3E-06 42.9 3.8 92 102-202 2-93 (150)
151 2gw1_A Mitochondrial precursor 92.2 0.54 1.9E-05 45.5 9.6 96 97-201 304-399 (514)
152 3qww_A SET and MYND domain-con 92.1 1.8 6.1E-05 42.5 13.2 71 95-165 338-413 (433)
153 4gyw_A UDP-N-acetylglucosamine 92.1 0.66 2.3E-05 48.7 10.6 98 95-201 75-172 (723)
154 1na0_A Designed protein CTPR3; 92.0 1 3.4E-05 33.7 9.2 64 97-163 43-106 (125)
155 3gyz_A Chaperone protein IPGC; 92.0 0.75 2.6E-05 37.9 8.9 64 97-163 70-133 (151)
156 3q49_B STIP1 homology and U bo 92.0 0.8 2.7E-05 35.6 8.8 65 97-164 43-107 (137)
157 1elw_A TPR1-domain of HOP; HOP 92.0 0.87 3E-05 33.7 8.7 64 97-163 38-101 (118)
158 2vgx_A Chaperone SYCD; alterna 91.7 0.9 3.1E-05 36.9 9.1 65 97-164 55-119 (148)
159 1hxi_A PEX5, peroxisome target 91.6 1 3.6E-05 35.1 9.0 63 97-162 51-113 (121)
160 2lni_A Stress-induced-phosphop 91.5 0.75 2.6E-05 35.2 8.0 64 97-163 50-113 (133)
161 3rkv_A Putative peptidylprolyl 91.3 2.7 9.1E-05 34.0 11.6 64 97-163 63-126 (162)
162 3n71_A Histone lysine methyltr 91.2 2.4 8E-05 42.3 13.1 100 102-202 314-421 (490)
163 2kc7_A BFR218_protein; tetratr 91.2 1.2 4.2E-05 32.5 8.6 61 100-163 3-64 (99)
164 1w3b_A UDP-N-acetylglucosamine 90.8 0.98 3.3E-05 42.3 9.5 63 97-162 67-129 (388)
165 3qou_A Protein YBBN; thioredox 90.7 1.5 5E-05 39.9 10.3 61 97-160 117-177 (287)
166 4abn_A Tetratricopeptide repea 90.5 0.51 1.7E-05 46.6 7.4 96 97-202 137-249 (474)
167 2vsy_A XCC0866; transferase, g 90.4 1.5 5.2E-05 43.8 11.0 63 97-162 91-156 (568)
168 1qbj_A Protein (double-strande 90.3 0.95 3.2E-05 33.5 7.0 55 300-355 15-72 (81)
169 1p5q_A FKBP52, FK506-binding p 90.3 1.9 6.5E-05 40.2 10.9 91 97-196 196-286 (336)
170 1ouv_A Conserved hypothetical 90.1 2.4 8.3E-05 37.3 11.1 92 98-202 39-142 (273)
171 1w3b_A UDP-N-acetylglucosamine 90.1 2.3 7.7E-05 39.7 11.4 96 97-201 203-298 (388)
172 1qgp_A Protein (double strande 89.9 0.8 2.7E-05 33.5 6.2 55 300-355 19-76 (77)
173 1wao_1 Serine/threonine protei 89.9 0.21 7.2E-06 49.6 4.0 95 97-200 40-136 (477)
174 1ihg_A Cyclophilin 40; ppiase 89.4 4.5 0.00015 38.4 12.9 68 93-163 269-336 (370)
175 4f3v_A ESX-1 secretion system 89.3 2.4 8.2E-05 39.1 10.5 100 99-202 137-236 (282)
176 3qwp_A SET and MYND domain-con 89.3 3.8 0.00013 40.0 12.5 98 104-202 294-399 (429)
177 2fbn_A 70 kDa peptidylprolyl i 88.9 1.9 6.5E-05 36.2 9.0 64 97-163 88-151 (198)
178 2pzi_A Probable serine/threoni 88.9 2.1 7.3E-05 44.2 11.0 95 97-201 467-561 (681)
179 3rjv_A Putative SEL1 repeat pr 88.9 2.5 8.4E-05 36.3 9.9 92 97-202 18-117 (212)
180 1kt0_A FKBP51, 51 kDa FK506-bi 88.2 2.4 8.2E-05 41.5 10.3 94 97-199 317-410 (457)
181 3qww_A SET and MYND domain-con 88.0 2.8 9.6E-05 41.0 10.6 94 108-202 309-410 (433)
182 2ond_A Cleavage stimulation fa 87.9 2.7 9.4E-05 38.2 10.0 97 97-203 99-198 (308)
183 3tqn_A Transcriptional regulat 87.5 1.6 5.3E-05 34.3 6.9 64 288-353 11-75 (113)
184 1wao_1 Serine/threonine protei 87.5 1.6 5.3E-05 43.2 8.5 31 97-127 74-104 (477)
185 2heo_A Z-DNA binding protein 1 87.2 0.87 3E-05 32.2 4.8 46 295-341 11-57 (67)
186 3qwp_A SET and MYND domain-con 86.8 4.6 0.00016 39.4 11.3 73 94-166 326-403 (429)
187 2ond_A Cleavage stimulation fa 86.8 5 0.00017 36.4 11.1 102 98-204 169-271 (308)
188 1sfx_A Conserved hypothetical 86.2 4.6 0.00016 30.2 8.9 68 307-376 32-101 (109)
189 3by6_A Predicted transcription 85.6 1.7 6E-05 34.8 6.4 64 288-353 13-77 (126)
190 2if4_A ATFKBP42; FKBP-like, al 85.6 1.2 4.1E-05 41.7 6.2 63 98-163 231-293 (338)
191 2b0l_A GTP-sensing transcripti 85.5 1.4 4.6E-05 34.1 5.4 57 296-353 30-87 (102)
192 3t5v_A Nuclear mRNA export pro 85.1 1.6 5.4E-05 41.0 6.7 64 262-330 177-246 (316)
193 3txn_A 26S proteasome regulato 84.4 15 0.00053 35.3 13.5 129 98-227 20-191 (394)
194 2r5s_A Uncharacterized protein 84.4 5.5 0.00019 32.6 9.3 97 97-202 40-136 (176)
195 2h6f_A Protein farnesyltransfe 84.2 1.5 5.2E-05 42.1 6.3 97 97-202 131-228 (382)
196 3neu_A LIN1836 protein; struct 84.0 2.3 8E-05 33.9 6.4 65 287-353 14-79 (125)
197 2hr2_A Hypothetical protein; a 83.8 6.5 0.00022 32.9 9.3 63 99-164 59-132 (159)
198 4ham_A LMO2241 protein; struct 83.3 2.9 9.8E-05 33.7 6.8 66 287-354 15-81 (134)
199 2e2e_A Formate-dependent nitri 82.5 4.9 0.00017 32.7 8.2 64 97-163 78-144 (177)
200 2c2l_A CHIP, carboxy terminus 82.4 5.1 0.00017 36.1 8.9 64 97-163 38-101 (281)
201 2h6f_A Protein farnesyltransfe 82.3 2.9 0.0001 40.0 7.5 99 94-201 94-193 (382)
202 3rjv_A Putative SEL1 repeat pr 82.2 15 0.0005 31.2 11.5 97 97-201 85-195 (212)
203 2ek5_A Predicted transcription 81.8 3.2 0.00011 33.4 6.4 64 288-353 6-70 (129)
204 2htj_A P fimbrial regulatory p 81.7 2.7 9.3E-05 30.5 5.5 41 301-341 6-46 (81)
205 1v4r_A Transcriptional repress 81.6 0.78 2.7E-05 35.2 2.5 65 288-354 13-78 (102)
206 2oqg_A Possible transcriptiona 81.6 12 0.00042 28.4 9.7 49 295-345 22-70 (114)
207 1pc2_A Mitochondria fission pr 81.2 13 0.00043 30.9 10.0 34 95-128 69-102 (152)
208 3mv2_B Coatomer subunit epsilo 80.9 35 0.0012 31.6 14.5 180 37-227 77-269 (310)
209 2oo2_A Hypothetical protein AF 80.8 2.6 9E-05 31.5 5.0 56 68-123 6-61 (86)
210 4g1t_A Interferon-induced prot 79.1 7.7 0.00026 36.9 9.4 68 96-163 93-167 (472)
211 2r5s_A Uncharacterized protein 79.0 6.6 0.00023 32.1 7.8 64 97-161 108-171 (176)
212 1ub9_A Hypothetical protein PH 78.3 8.3 0.00028 28.5 7.5 51 294-345 16-66 (100)
213 2pzi_A Probable serine/threoni 78.2 7.3 0.00025 40.1 9.4 95 97-201 433-527 (681)
214 1xi4_A Clathrin heavy chain; a 77.7 14 0.00049 41.7 11.7 60 96-163 1104-1163(1630)
215 3c7j_A Transcriptional regulat 77.1 4.8 0.00016 35.8 6.7 65 286-352 26-90 (237)
216 3r0a_A Putative transcriptiona 76.5 22 0.00076 27.8 9.9 70 310-379 43-114 (123)
217 1xi4_A Clathrin heavy chain; a 76.4 1.1E+02 0.0038 34.8 21.9 54 98-162 1196-1249(1630)
218 2xm6_A Protein corresponding t 76.0 18 0.0006 35.0 11.1 93 97-202 75-179 (490)
219 2xm6_A Protein corresponding t 75.7 25 0.00085 33.9 12.1 92 97-201 111-214 (490)
220 2pmr_A Uncharacterized protein 75.7 9 0.00031 28.6 6.7 53 71-123 7-65 (87)
221 2l6j_A TPR repeat-containing p 75.7 7.4 0.00025 28.4 6.5 34 97-130 38-71 (111)
222 1oyi_A Double-stranded RNA-bin 75.5 4.7 0.00016 29.8 5.0 45 295-341 18-62 (82)
223 1klx_A Cysteine rich protein B 75.4 12 0.00042 29.5 8.2 61 97-162 57-125 (138)
224 3cuo_A Uncharacterized HTH-typ 74.8 12 0.0004 27.6 7.5 52 294-346 24-75 (99)
225 1nzn_A CGI-135 protein, fissio 74.8 6.1 0.00021 31.7 6.0 40 94-133 71-110 (126)
226 2d1h_A ST1889, 109AA long hypo 74.6 22 0.00077 26.2 9.2 49 299-347 26-74 (109)
227 3bee_A Putative YFRE protein; 74.5 9.3 0.00032 28.4 6.8 32 97-128 43-74 (93)
228 2ooe_A Cleavage stimulation fa 74.5 16 0.00056 35.7 10.5 88 108-200 402-489 (530)
229 1xmk_A Double-stranded RNA-spe 74.2 4.7 0.00016 29.6 4.7 47 294-341 11-58 (79)
230 2ooe_A Cleavage stimulation fa 74.2 12 0.0004 36.8 9.3 97 97-203 321-420 (530)
231 2p5v_A Transcriptional regulat 73.8 5.3 0.00018 33.1 5.7 47 300-346 15-64 (162)
232 2cfx_A HTH-type transcriptiona 73.5 5.8 0.0002 32.1 5.7 47 300-346 10-59 (144)
233 2dbb_A Putative HTH-type trans 73.1 4.8 0.00017 32.8 5.2 47 300-346 14-63 (151)
234 3ffl_A Anaphase-promoting comp 72.7 28 0.00097 29.2 9.8 34 94-127 60-93 (167)
235 1q1h_A TFE, transcription fact 72.6 2 6.9E-05 33.1 2.6 61 282-342 6-66 (110)
236 2pg4_A Uncharacterized protein 72.4 13 0.00043 27.5 7.1 55 283-340 6-62 (95)
237 2ia0_A Putative HTH-type trans 72.2 11 0.00036 31.7 7.3 46 301-346 23-71 (171)
238 3jth_A Transcription activator 72.2 13 0.00043 27.6 7.1 59 291-351 20-78 (98)
239 3f6o_A Probable transcriptiona 72.1 11 0.00039 29.2 7.0 56 288-345 12-67 (118)
240 2cg4_A Regulatory protein ASNC 71.9 5.4 0.00018 32.6 5.2 47 300-346 13-62 (152)
241 3ma5_A Tetratricopeptide repea 71.2 9.9 0.00034 27.9 6.3 31 97-127 41-71 (100)
242 2cru_A Programmed cell death p 70.5 2 6.8E-05 34.2 2.0 54 291-344 34-87 (118)
243 1y0u_A Arsenical resistance op 70.3 10 0.00035 28.2 6.1 50 290-342 27-76 (96)
244 3lwf_A LIN1550 protein, putati 70.0 13 0.00044 30.9 7.2 70 283-355 21-90 (159)
245 1na3_A Designed protein CTPR2; 69.6 15 0.00052 25.4 6.8 31 97-127 43-73 (91)
246 4a0z_A Transcription factor FA 69.4 6.2 0.00021 34.0 5.2 46 292-337 9-54 (190)
247 1b89_A Protein (clathrin heavy 68.8 7.7 0.00026 38.1 6.3 110 99-226 124-252 (449)
248 3o48_A Mitochondria fission 1 68.5 19 0.00064 29.2 7.5 42 93-134 74-115 (134)
249 2v79_A DNA replication protein 67.9 12 0.0004 30.3 6.3 57 307-366 49-107 (135)
250 2kko_A Possible transcriptiona 67.8 8.9 0.00031 29.4 5.4 52 293-346 24-75 (108)
251 3ic7_A Putative transcriptiona 67.0 2.7 9.2E-05 33.6 2.2 64 288-353 13-77 (126)
252 3ihu_A Transcriptional regulat 66.6 11 0.00038 32.7 6.5 65 287-353 17-81 (222)
253 1tbx_A ORF F-93, hypothetical 66.6 35 0.0012 25.1 8.6 64 303-368 16-83 (99)
254 3f8m_A GNTR-family protein tra 66.6 16 0.00053 32.7 7.5 63 287-354 15-78 (248)
255 3i4p_A Transcriptional regulat 66.3 8.4 0.00029 31.9 5.3 48 299-346 7-57 (162)
256 3dkw_A DNR protein; CRP-FNR, H 66.2 59 0.002 27.4 11.7 44 308-355 177-220 (227)
257 2kc7_A BFR218_protein; tetratr 66.2 17 0.00059 25.9 6.6 31 99-129 37-67 (99)
258 2l0k_A Stage III sporulation p 66.1 5.2 0.00018 30.3 3.5 35 296-331 8-42 (93)
259 1sfu_A 34L protein; protein/Z- 65.7 14 0.00049 26.7 5.6 42 300-341 20-61 (75)
260 3edp_A LIN2111 protein; APC883 65.7 11 0.00037 33.4 6.3 66 288-355 11-77 (236)
261 2hs5_A Putative transcriptiona 65.1 14 0.00048 32.7 6.9 64 288-353 30-93 (239)
262 3qou_A Protein YBBN; thioredox 65.1 29 0.00099 30.9 9.2 63 97-160 219-281 (287)
263 4g26_A Pentatricopeptide repea 65.1 60 0.0021 31.9 12.2 163 100-277 29-204 (501)
264 2pn6_A ST1022, 150AA long hypo 65.0 16 0.00055 29.4 6.8 47 300-346 8-57 (150)
265 1pc2_A Mitochondria fission pr 65.0 50 0.0017 27.2 9.7 90 60-163 8-100 (152)
266 2fh0_A Hypothetical 16.0 kDa p 65.0 1.2 4.1E-05 32.9 -0.3 49 296-344 7-55 (81)
267 1r1u_A CZRA, repressor protein 64.9 26 0.00089 26.4 7.6 50 294-345 26-75 (106)
268 2e1c_A Putative HTH-type trans 64.8 7.9 0.00027 32.5 4.9 47 300-346 32-81 (171)
269 3sxy_A Transcriptional regulat 64.7 10 0.00034 32.9 5.7 64 288-353 14-77 (218)
270 2wv0_A YVOA, HTH-type transcri 64.1 13 0.00045 33.0 6.5 66 287-354 11-77 (243)
271 3pqk_A Biofilm growth-associat 64.1 27 0.00094 25.9 7.5 62 290-353 19-80 (102)
272 1hw1_A FADR, fatty acid metabo 64.1 13 0.00046 32.5 6.6 63 288-352 9-72 (239)
273 4ev0_A Transcription regulator 63.6 29 0.001 29.1 8.6 45 307-355 161-205 (216)
274 3ffl_A Anaphase-promoting comp 63.5 24 0.00082 29.7 7.5 69 133-201 19-90 (167)
275 3t8r_A Staphylococcus aureus C 63.5 18 0.0006 29.4 6.7 35 308-342 27-61 (143)
276 2p5k_A Arginine repressor; DNA 63.0 18 0.00063 24.2 5.8 51 295-350 5-60 (64)
277 1ft9_A Carbon monoxide oxidati 63.0 39 0.0013 28.6 9.3 32 309-340 163-194 (222)
278 3ax2_A Mitochondrial import re 62.8 26 0.00088 25.2 6.5 38 100-137 20-57 (73)
279 4b4t_P 26S proteasome regulato 62.7 1.1E+02 0.0036 29.6 13.4 80 92-171 172-255 (445)
280 2gxg_A 146AA long hypothetical 62.7 50 0.0017 25.7 9.3 46 302-348 44-89 (146)
281 1i1g_A Transcriptional regulat 62.4 8.3 0.00029 30.8 4.5 41 300-340 9-49 (141)
282 2v5f_A Prolyl 4-hydroxylase su 61.7 32 0.0011 25.5 7.5 68 134-201 5-73 (104)
283 2fbh_A Transcriptional regulat 61.5 38 0.0013 26.4 8.4 49 305-353 48-99 (146)
284 3eet_A Putative GNTR-family tr 61.5 15 0.00052 33.3 6.5 66 287-354 30-96 (272)
285 2fbi_A Probable transcriptiona 61.4 24 0.00083 27.5 7.1 43 307-349 48-90 (142)
286 2cyy_A Putative HTH-type trans 61.3 8.9 0.0003 31.2 4.5 47 300-346 12-61 (151)
287 2nnn_A Probable transcriptiona 61.2 29 0.00098 27.0 7.5 43 307-349 50-92 (140)
288 2frh_A SARA, staphylococcal ac 61.0 23 0.00077 27.7 6.8 67 308-376 52-121 (127)
289 2w25_A Probable transcriptiona 60.8 14 0.00047 29.9 5.6 46 301-346 13-61 (150)
290 3bwg_A Uncharacterized HTH-typ 60.8 19 0.00064 31.9 6.9 63 289-353 8-71 (239)
291 3bpv_A Transcriptional regulat 60.7 41 0.0014 26.0 8.4 44 307-350 41-84 (138)
292 3u64_A Protein TP_0956; tetrat 60.5 23 0.00079 32.7 7.5 75 98-174 200-281 (301)
293 2wpv_A GET4, UPF0363 protein Y 60.3 98 0.0034 28.6 11.9 119 72-199 12-159 (312)
294 1y8m_A FIS1; mitochondria, unk 60.2 27 0.00093 28.6 7.1 55 74-133 59-113 (144)
295 1deq_A Fibrinogen (alpha chain 59.7 1E+02 0.0035 29.2 11.7 98 66-165 58-158 (390)
296 3dv8_A Transcriptional regulat 59.7 43 0.0015 28.1 8.9 44 308-355 168-211 (220)
297 1ylf_A RRF2 family protein; st 59.5 30 0.001 28.0 7.5 47 306-353 27-73 (149)
298 3tgn_A ADC operon repressor AD 59.4 34 0.0012 26.8 7.7 48 301-349 44-91 (146)
299 1nzn_A CGI-135 protein, fissio 59.2 57 0.0019 26.0 8.7 69 128-201 33-101 (126)
300 2y75_A HTH-type transcriptiona 58.9 34 0.0012 26.8 7.5 46 308-353 25-70 (129)
301 2kat_A Uncharacterized protein 58.9 11 0.00036 28.1 4.3 32 97-128 53-84 (115)
302 1eij_A Hypothetical protein MT 58.6 1.4 4.9E-05 32.5 -0.8 46 296-344 9-57 (80)
303 2qvo_A Uncharacterized protein 58.4 22 0.00074 26.3 5.9 44 310-353 31-74 (95)
304 1jgs_A Multiple antibiotic res 58.1 52 0.0018 25.4 8.6 43 307-349 46-88 (138)
305 1r1t_A Transcriptional repress 58.1 53 0.0018 25.5 8.5 49 294-344 46-94 (122)
306 3nqo_A MARR-family transcripti 58.1 81 0.0028 26.2 10.9 43 306-348 54-96 (189)
307 2hzt_A Putative HTH-type trans 57.9 41 0.0014 25.4 7.6 42 307-348 25-67 (107)
308 1tc3_C Protein (TC3 transposas 57.8 12 0.00041 23.2 3.8 26 308-333 20-45 (51)
309 1s3j_A YUSO protein; structura 57.4 44 0.0015 26.5 8.1 43 306-348 48-90 (155)
310 2a61_A Transcriptional regulat 57.1 36 0.0012 26.6 7.5 43 307-349 45-87 (145)
311 3e97_A Transcriptional regulat 57.1 42 0.0014 28.5 8.5 43 308-354 174-216 (231)
312 3k0l_A Repressor protein; heli 57.0 35 0.0012 27.5 7.5 42 307-348 58-99 (162)
313 1r7j_A Conserved hypothetical 56.6 43 0.0015 25.0 7.3 33 310-342 21-53 (95)
314 1j5y_A Transcriptional regulat 56.6 20 0.00067 30.4 6.0 48 293-340 19-68 (187)
315 1lj9_A Transcriptional regulat 56.0 52 0.0018 25.6 8.3 42 307-348 41-82 (144)
316 2pjp_A Selenocysteine-specific 55.9 16 0.00054 28.7 4.9 46 294-341 7-52 (121)
317 2xvc_A ESCRT-III, SSO0910; cel 55.7 15 0.00051 25.1 3.9 32 308-339 24-55 (59)
318 2nsz_A Programmed cell death p 55.5 74 0.0025 25.1 9.0 47 98-148 8-54 (129)
319 3bja_A Transcriptional regulat 55.3 43 0.0015 25.8 7.6 42 307-348 45-86 (139)
320 2rdp_A Putative transcriptiona 55.0 51 0.0018 25.8 8.2 43 307-349 54-96 (150)
321 1b89_A Protein (clathrin heavy 55.0 12 0.0004 36.8 4.7 52 100-160 97-148 (449)
322 3eco_A MEPR; mutlidrug efflux 54.6 43 0.0015 26.0 7.5 41 308-348 46-86 (139)
323 1u2w_A CADC repressor, cadmium 54.6 47 0.0016 25.7 7.6 53 291-344 39-91 (122)
324 3oop_A LIN2960 protein; protei 54.5 56 0.0019 25.5 8.2 47 307-353 49-98 (143)
325 3t5x_A PCI domain-containing p 54.4 46 0.0016 28.6 8.1 60 92-151 9-70 (203)
326 3hsr_A HTH-type transcriptiona 54.1 24 0.00083 27.7 5.9 48 301-348 42-89 (140)
327 3bj6_A Transcriptional regulat 53.9 46 0.0016 26.2 7.7 44 305-348 50-93 (152)
328 2nyx_A Probable transcriptiona 53.5 57 0.0019 26.5 8.4 42 307-348 57-98 (168)
329 3bdd_A Regulatory protein MARR 53.2 28 0.00095 27.1 6.1 42 307-348 43-84 (142)
330 2di3_A Bacterial regulatory pr 53.2 24 0.0008 31.0 6.2 67 288-354 6-75 (239)
331 3ghg_A Fibrinogen alpha chain; 53.0 38 0.0013 33.6 7.8 113 51-165 25-155 (562)
332 3mkq_A Coatomer beta'-subunit; 52.8 53 0.0018 33.5 9.7 81 98-200 682-762 (814)
333 3s2w_A Transcriptional regulat 52.6 43 0.0015 26.8 7.4 42 307-348 62-103 (159)
334 2eth_A Transcriptional regulat 52.6 66 0.0022 25.5 8.5 42 307-348 56-97 (154)
335 1on2_A Transcriptional regulat 52.1 75 0.0026 24.8 8.7 46 305-353 18-63 (142)
336 1om2_A Protein (mitochondrial 51.9 23 0.00077 26.9 4.9 37 101-137 24-60 (95)
337 2fmy_A COOA, carbon monoxide o 51.6 67 0.0023 27.0 8.8 43 308-354 166-209 (220)
338 3cjn_A Transcriptional regulat 51.1 65 0.0022 25.7 8.3 42 307-348 64-105 (162)
339 3ryp_A Catabolite gene activat 51.0 55 0.0019 27.2 8.1 41 309-353 167-207 (210)
340 3k69_A Putative transcription 50.5 33 0.0011 28.4 6.3 49 293-342 13-61 (162)
341 3f6v_A Possible transcriptiona 50.0 65 0.0022 26.2 8.0 57 289-347 53-109 (151)
342 3nrv_A Putative transcriptiona 50.0 40 0.0014 26.5 6.7 42 307-348 52-93 (148)
343 2gau_A Transcriptional regulat 50.0 60 0.002 27.5 8.3 44 308-355 179-222 (232)
344 3lpz_A GET4 (YOR164C homolog); 49.8 1.7E+02 0.0057 27.4 11.8 123 72-199 11-161 (336)
345 2hr3_A Probable transcriptiona 49.4 61 0.0021 25.3 7.7 42 307-348 48-89 (147)
346 1ku9_A Hypothetical protein MJ 48.8 91 0.0031 24.1 9.7 41 308-348 40-80 (152)
347 3ech_A MEXR, multidrug resista 48.4 23 0.0008 27.8 4.9 43 307-349 49-91 (142)
348 1zu2_A Mitochondrial import re 48.2 43 0.0015 27.7 6.6 64 97-163 36-120 (158)
349 3ly7_A Transcriptional activat 48.1 1.2E+02 0.0042 28.7 10.6 63 97-163 277-339 (372)
350 3d0s_A Transcriptional regulat 48.0 95 0.0032 26.1 9.3 43 309-355 177-219 (227)
351 3bro_A Transcriptional regulat 47.7 78 0.0027 24.4 8.0 40 309-348 50-89 (141)
352 1uly_A Hypothetical protein PH 47.7 42 0.0014 28.6 6.7 51 290-342 16-66 (192)
353 3e4b_A ALGK; tetratricopeptide 47.4 86 0.0029 30.0 9.8 56 100-161 216-278 (452)
354 2jxn_A Uncharacterized protein 47.0 4.1 0.00014 32.8 0.1 49 296-344 42-90 (127)
355 3iwz_A CAP-like, catabolite ac 47.0 97 0.0033 26.0 9.2 43 309-355 187-229 (230)
356 1xd7_A YWNA; structural genomi 47.0 25 0.00086 28.4 4.9 41 311-352 25-65 (145)
357 2fa5_A Transcriptional regulat 46.8 38 0.0013 27.1 6.1 42 307-348 61-102 (162)
358 3e4b_A ALGK; tetratricopeptide 46.5 43 0.0015 32.2 7.4 91 99-201 178-278 (452)
359 2k9l_A RNA polymerase sigma fa 46.4 19 0.00064 25.9 3.6 26 307-332 46-71 (76)
360 3iuo_A ATP-dependent DNA helic 46.4 20 0.00068 28.3 4.1 33 308-340 31-64 (122)
361 3cdh_A Transcriptional regulat 45.9 61 0.0021 25.6 7.2 47 302-348 50-96 (155)
362 2ion_A PDCD4, programmed cell 45.5 1.1E+02 0.0039 24.8 8.8 49 96-148 8-56 (152)
363 2jn6_A Protein CGL2762, transp 45.1 37 0.0013 25.0 5.3 42 295-337 10-51 (97)
364 1bia_A BIRA bifunctional prote 44.9 28 0.00097 32.3 5.5 44 296-339 6-49 (321)
365 4fhn_B Nucleoporin NUP120; pro 44.7 2.2E+02 0.0074 31.1 13.4 169 100-278 845-1050(1139)
366 2bv6_A MGRA, HTH-type transcri 44.7 32 0.0011 26.9 5.2 42 307-348 49-90 (142)
367 2qlz_A Transcription factor PF 44.6 1.1E+02 0.0036 27.0 9.0 45 305-352 174-218 (232)
368 3f3x_A Transcriptional regulat 43.9 70 0.0024 24.9 7.2 42 307-349 49-90 (144)
369 3kcc_A Catabolite gene activat 43.8 77 0.0026 27.7 8.2 41 309-353 217-257 (260)
370 2vxz_A Pyrsv_GP04; viral prote 43.7 39 0.0013 27.9 5.3 43 297-340 13-55 (165)
371 3e6m_A MARR family transcripti 43.6 41 0.0014 27.0 5.9 47 307-353 65-114 (161)
372 3hug_A RNA polymerase sigma fa 43.6 37 0.0013 24.8 5.0 38 294-334 41-78 (92)
373 2hvu_A PDCD5-like protein; YMR 43.4 4 0.00014 32.2 -0.5 49 296-344 42-90 (116)
374 4b8x_A SCO5413, possible MARR- 43.3 61 0.0021 25.8 6.8 44 305-348 47-90 (147)
375 2qww_A Transcriptional regulat 43.2 34 0.0012 27.1 5.2 42 307-348 53-96 (154)
376 3g3z_A NMB1585, transcriptiona 43.2 46 0.0016 26.1 5.9 42 307-348 43-84 (145)
377 4e6h_A MRNA 3'-END-processing 42.9 65 0.0022 33.2 8.4 61 100-163 472-533 (679)
378 2jsc_A Transcriptional regulat 42.8 45 0.0015 25.7 5.7 54 290-345 17-70 (118)
379 4hbl_A Transcriptional regulat 42.7 35 0.0012 27.1 5.2 47 307-353 53-102 (149)
380 3df8_A Possible HXLR family tr 42.6 87 0.003 23.7 7.3 55 290-344 23-78 (111)
381 2fsw_A PG_0823 protein; alpha- 42.1 89 0.003 23.4 7.2 43 307-349 36-79 (107)
382 4g26_A Pentatricopeptide repea 42.1 2.5E+02 0.0087 27.3 14.7 63 99-163 142-204 (501)
383 1yyv_A Putative transcriptiona 41.8 1.3E+02 0.0043 23.7 9.8 43 307-349 46-89 (131)
384 2oz6_A Virulence factor regula 41.8 79 0.0027 26.1 7.6 41 309-353 164-204 (207)
385 2x4h_A Hypothetical protein SS 41.4 44 0.0015 26.1 5.6 41 301-341 23-63 (139)
386 1zu2_A Mitochondrial import re 41.2 54 0.0018 27.1 6.1 34 96-129 79-123 (158)
387 4h7y_A Dual specificity protei 41.1 45 0.0015 27.7 5.4 42 98-139 95-136 (161)
388 2pex_A Transcriptional regulat 41.0 40 0.0014 26.7 5.3 42 307-348 59-100 (153)
389 3mn2_A Probable ARAC family tr 40.0 43 0.0015 25.0 5.1 26 307-332 16-41 (108)
390 3b73_A PHIH1 repressor-like pr 39.3 32 0.0011 26.7 4.1 43 300-342 18-62 (111)
391 2kfs_A Conserved hypothetical 39.2 35 0.0012 28.0 4.5 39 308-353 30-69 (148)
392 1fse_A GERE; helix-turn-helix 39.2 51 0.0017 22.5 5.0 29 307-335 24-52 (74)
393 3kp7_A Transcriptional regulat 38.6 63 0.0022 25.4 6.2 43 306-348 48-92 (151)
394 2lkp_A Transcriptional regulat 38.3 70 0.0024 24.3 6.2 45 296-342 34-78 (119)
395 3deu_A Transcriptional regulat 38.2 1.5E+02 0.0051 23.9 8.6 47 307-353 66-115 (166)
396 2p7v_B Sigma-70, RNA polymeras 37.8 64 0.0022 21.9 5.3 29 307-335 23-51 (68)
397 2elh_A CG11849-PA, LD40883P; s 37.6 50 0.0017 23.9 4.9 27 308-334 37-63 (87)
398 2k9s_A Arabinose operon regula 37.3 36 0.0012 25.5 4.2 25 308-332 19-43 (107)
399 3k2z_A LEXA repressor; winged 37.1 37 0.0013 28.8 4.7 33 309-341 24-56 (196)
400 3la7_A Global nitrogen regulat 37.0 1.9E+02 0.0067 24.5 10.8 45 308-356 192-236 (243)
401 2lnb_A Z-DNA-binding protein 1 36.9 78 0.0027 22.9 5.5 48 292-339 17-64 (80)
402 2fu4_A Ferric uptake regulatio 36.9 1E+02 0.0035 21.6 6.5 44 298-341 20-70 (83)
403 3mkq_B Coatomer subunit alpha; 36.7 1.9E+02 0.0065 24.3 9.6 29 98-126 35-63 (177)
404 2vkj_A TM1634; membrane protei 36.1 1.3E+02 0.0046 22.4 9.6 46 97-142 53-100 (106)
405 1stz_A Heat-inducible transcri 35.8 39 0.0013 31.7 4.9 39 302-340 29-69 (338)
406 1z91_A Organic hydroperoxide r 35.8 36 0.0012 26.7 4.2 42 307-348 52-93 (147)
407 3e6c_C CPRK, cyclic nucleotide 35.7 1.7E+02 0.0057 25.0 9.0 42 308-353 176-217 (250)
408 3eqx_A FIC domain containing t 35.6 50 0.0017 31.4 5.7 41 300-340 302-342 (373)
409 3fx3_A Cyclic nucleotide-bindi 35.5 68 0.0023 27.2 6.3 42 309-355 178-219 (237)
410 1z6r_A MLC protein; transcript 35.4 45 0.0015 31.7 5.4 46 294-339 15-60 (406)
411 3oou_A LIN2118 protein; protei 35.2 66 0.0023 24.0 5.5 27 307-333 19-45 (108)
412 3lsg_A Two-component response 35.1 74 0.0025 23.4 5.7 25 309-333 19-43 (103)
413 2qc0_A Uncharacterized protein 34.8 52 0.0018 31.2 5.7 33 309-341 311-343 (373)
414 1ku3_A Sigma factor SIGA; heli 34.4 73 0.0025 21.9 5.2 28 308-335 29-56 (73)
415 1klx_A Cysteine rich protein B 34.4 1.6E+02 0.0054 22.7 12.7 86 103-201 31-124 (138)
416 2f2e_A PA1607; transcription f 34.2 1.1E+02 0.0036 24.6 6.8 42 307-348 35-76 (146)
417 2ao9_A Phage protein; structur 34.2 56 0.0019 27.0 5.1 45 287-331 24-70 (155)
418 2o8x_A Probable RNA polymerase 34.1 74 0.0025 21.3 5.1 29 307-335 29-57 (70)
419 2w48_A Sorbitol operon regulat 34.1 67 0.0023 29.4 6.2 40 307-346 19-58 (315)
420 1m1j_A Fibrinogen alpha subuni 34.1 3.4E+02 0.012 26.4 11.5 99 65-165 55-156 (491)
421 1z05_A Transcriptional regulat 34.0 49 0.0017 31.8 5.5 47 293-339 37-83 (429)
422 2ff4_A Probable regulatory pro 33.7 2.2E+02 0.0076 26.7 10.1 73 95-170 169-243 (388)
423 2vn2_A DNAD, chromosome replic 33.7 32 0.0011 27.2 3.4 35 310-344 52-86 (128)
424 4a5n_A Uncharacterized HTH-typ 33.4 1.6E+02 0.0056 23.2 7.7 71 307-377 37-112 (131)
425 3i71_A Ethanolamine utilizatio 33.4 73 0.0025 21.7 4.5 35 307-341 16-50 (68)
426 3jw4_A Transcriptional regulat 33.4 37 0.0013 26.8 3.9 43 308-350 56-98 (148)
427 1pdn_C Protein (PRD paired); p 33.3 68 0.0023 24.2 5.3 43 294-339 21-63 (128)
428 2rpa_A Katanin P60 ATPase-cont 32.9 45 0.0016 24.2 3.8 26 100-125 15-40 (78)
429 1z7u_A Hypothetical protein EF 32.4 1.6E+02 0.0054 22.1 9.3 42 308-349 34-76 (112)
430 2da7_A Zinc finger homeobox pr 32.4 38 0.0013 24.1 3.2 31 308-339 31-61 (71)
431 2yru_A Steroid receptor RNA ac 32.3 1.7E+02 0.0058 22.8 7.4 49 72-124 40-88 (118)
432 3kz3_A Repressor protein CI; f 32.0 18 0.00061 25.6 1.5 26 309-334 54-79 (80)
433 1tty_A Sigma-A, RNA polymerase 31.9 62 0.0021 23.3 4.6 28 308-335 37-64 (87)
434 3c57_A Two component transcrip 31.8 67 0.0023 23.6 4.8 29 307-335 40-68 (95)
435 2bgc_A PRFA; bacterial infecti 31.6 1.2E+02 0.004 25.8 7.2 43 309-355 169-212 (238)
436 3u2r_A Regulatory protein MARR 31.5 1E+02 0.0035 24.7 6.5 42 308-349 61-102 (168)
437 1je8_A Nitrate/nitrite respons 31.3 78 0.0027 22.5 5.0 29 307-335 34-62 (82)
438 4fx0_A Probable transcriptiona 31.3 1.9E+02 0.0066 22.8 9.1 40 308-348 51-90 (148)
439 1ug3_A EIF4GI, eukaryotic prot 31.0 1.2E+02 0.004 28.1 7.5 52 93-148 7-58 (339)
440 2hoe_A N-acetylglucosamine kin 30.8 16 0.00055 34.6 1.3 42 298-340 23-64 (380)
441 1x3u_A Transcriptional regulat 30.5 83 0.0028 21.7 5.0 29 307-335 29-57 (79)
442 2rn7_A IS629 ORFA; helix, all 30.3 63 0.0022 24.2 4.6 44 295-338 11-59 (108)
443 2gqq_A Leucine-responsive regu 30.2 8.1 0.00028 32.0 -0.8 49 292-341 11-59 (163)
444 2xzm_8 RPS25E,; ribosome, tran 30.1 1E+02 0.0035 25.0 5.7 52 304-355 57-109 (143)
445 1nd9_A Translation initiation 30.1 40 0.0014 21.3 2.9 25 309-333 2-26 (49)
446 3fm5_A Transcriptional regulat 29.9 1E+02 0.0035 24.1 6.1 41 308-348 53-93 (150)
447 2ra5_A Putative transcriptiona 29.8 14 0.00046 33.0 0.6 63 288-352 18-81 (247)
448 2jpc_A SSRB; DNA binding prote 29.7 76 0.0026 20.7 4.4 29 307-335 11-39 (61)
449 1rr7_A Middle operon regulator 29.5 1.1E+02 0.0038 24.2 6.0 64 269-335 55-118 (129)
450 1wy6_A Hypothetical protein ST 29.4 66 0.0023 26.4 4.5 63 61-126 89-154 (172)
451 3boq_A Transcriptional regulat 29.3 77 0.0026 25.1 5.2 42 307-348 60-101 (160)
452 3dn7_A Cyclic nucleotide bindi 29.3 28 0.00097 28.7 2.5 29 307-335 166-194 (194)
453 1uuj_A Platelet-activating fac 29.2 1.7E+02 0.006 21.6 6.6 37 26-62 6-42 (88)
454 3bee_A Putative YFRE protein; 28.7 1.7E+02 0.0057 21.2 7.6 63 98-163 7-72 (93)
455 4aik_A Transcriptional regulat 28.5 2.2E+02 0.0075 22.5 9.2 41 308-348 45-85 (151)
456 2glo_A Brinker CG9653-PA; prot 28.4 71 0.0024 21.1 4.0 21 312-332 28-48 (59)
457 3hrs_A Metalloregulator SCAR; 28.4 1.6E+02 0.0053 25.2 7.3 51 300-353 11-61 (214)
458 1k78_A Paired box protein PAX5 28.2 86 0.0029 24.8 5.3 44 293-339 35-78 (149)
459 2k9m_A RNA polymerase sigma fa 28.1 51 0.0017 26.3 3.7 26 307-332 37-62 (130)
460 1e0g_A Membrane-bound lytic mu 28.0 43 0.0015 20.9 2.7 18 311-328 12-29 (48)
461 2rnj_A Response regulator prot 27.8 74 0.0025 23.0 4.4 29 307-335 42-70 (91)
462 2zkz_A Transcriptional repress 27.6 93 0.0032 22.9 5.0 52 291-344 24-75 (99)
463 3oio_A Transcriptional regulat 27.4 76 0.0026 23.9 4.6 26 307-332 21-46 (113)
464 2jrt_A Uncharacterized protein 27.2 45 0.0016 25.1 3.1 40 297-338 39-78 (95)
465 1bl0_A Protein (multiple antib 26.9 74 0.0025 24.7 4.5 27 307-333 25-51 (129)
466 2yin_A DOCK2, dedicator of cyt 26.8 4.3E+02 0.015 25.4 11.5 106 85-195 23-134 (436)
467 2fxa_A Protease production reg 26.6 92 0.0031 26.5 5.5 42 307-348 60-101 (207)
468 3o48_A Mitochondria fission 1 26.6 1.7E+02 0.0057 23.5 6.5 11 148-158 92-102 (134)
469 3u5c_Z RP45, S31, YS23, 40S ri 26.5 1.1E+02 0.0037 23.6 5.1 51 305-355 55-105 (108)
470 3mkl_A HTH-type transcriptiona 26.2 82 0.0028 24.0 4.6 26 307-332 21-46 (120)
471 1ucr_A Protein DSVD; dissimila 25.7 74 0.0025 23.0 3.7 33 308-340 20-53 (78)
472 1u8b_A ADA polyprotein; protei 25.5 1.4E+02 0.0047 23.2 5.9 42 291-332 75-116 (133)
473 2wte_A CSA3; antiviral protein 25.3 1.5E+02 0.005 26.2 6.7 45 307-353 164-208 (244)
474 2zvv_Y Cyclin-dependent kinase 25.2 22 0.00076 19.6 0.7 11 42-52 5-15 (26)
475 2pi2_A Replication protein A 3 25.2 15 0.00051 33.3 0.0 38 308-345 223-261 (270)
476 2hin_A GP39, repressor protein 25.1 58 0.002 23.0 3.1 21 312-332 13-33 (71)
477 2crb_A Nuclear receptor bindin 25.0 87 0.003 23.5 4.1 28 100-127 18-45 (97)
478 2rg8_A Programmed cell death p 24.9 1.9E+02 0.0063 23.9 6.8 89 93-203 6-94 (165)
479 1x2m_A LAG1 longevity assuranc 24.7 97 0.0033 21.4 4.2 33 300-332 15-51 (64)
480 1zyb_A Transcription regulator 24.5 99 0.0034 26.2 5.3 44 308-355 185-228 (232)
481 1or7_A Sigma-24, RNA polymeras 24.3 1.1E+02 0.0039 24.9 5.6 39 293-334 143-181 (194)
482 1o5l_A Transcriptional regulat 24.0 41 0.0014 28.3 2.6 44 308-355 163-206 (213)
483 3iqu_A 14-3-3 protein sigma; s 22.9 3.5E+02 0.012 23.8 8.5 73 47-126 130-205 (236)
484 3cuq_B Vacuolar protein-sortin 22.7 2E+02 0.0067 25.0 6.8 41 308-349 167-207 (218)
485 1zbp_A Hypothetical protein VP 22.7 2.4E+02 0.0082 25.5 7.5 65 74-144 14-78 (273)
486 3pv8_A DNA polymerase I; DNA p 22.5 1.6E+02 0.0054 29.8 7.0 55 33-87 173-237 (592)
487 3t5v_B Nuclear mRNA export pro 22.3 2.2E+02 0.0077 27.6 7.8 58 93-150 216-281 (455)
488 4h7y_A Dual specificity protei 22.2 3.3E+02 0.011 22.4 9.6 101 53-162 22-122 (161)
489 4b0z_A RPN12, 26S proteasome r 22.1 3.8E+02 0.013 23.1 10.9 87 108-194 18-117 (229)
490 3cta_A Riboflavin kinase; stru 21.9 2.9E+02 0.01 23.5 8.0 51 303-353 21-71 (230)
491 2zcw_A TTHA1359, transcription 21.8 78 0.0027 26.2 4.0 44 308-355 145-188 (202)
492 1b4a_A Arginine repressor; hel 21.7 84 0.0029 25.7 3.9 40 294-333 4-48 (149)
493 3t72_q RNA polymerase sigma fa 21.4 1.6E+02 0.0055 22.0 5.2 28 308-335 38-65 (99)
494 2olt_A Hypothetical protein; s 21.4 3.8E+02 0.013 22.8 9.7 75 252-333 33-107 (227)
495 1nxh_A MTH396 protein; hypothe 21.3 29 0.00098 27.5 0.9 41 290-332 5-45 (126)
496 3pvv_A Chromosomal replication 20.9 2.4E+02 0.0082 21.2 6.2 46 252-298 53-98 (101)
497 3b02_A Transcriptional regulat 20.8 63 0.0022 26.6 3.2 43 309-355 139-181 (195)
498 3mzy_A RNA polymerase sigma-H 20.7 1.5E+02 0.0052 23.1 5.4 28 307-334 122-149 (164)
499 1uxc_A FRUR (1-57), fructose r 20.6 73 0.0025 21.9 2.9 21 310-330 1-21 (65)
500 1jko_C HIN recombinase, DNA-in 20.6 24 0.00083 22.0 0.3 24 309-332 21-44 (52)
No 1
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-77 Score=598.31 Aligned_cols=384 Identities=38% Similarity=0.677 Sum_probs=310.3
Q ss_pred CCCCCCCcchhHhHHhHhhcCCCCccchHHhHHHHHHHHHHhCCCHHHHHHHHHhcCC--------------------CC
Q 016653 2 DSEGTQQAHLVLAHKRFLLTHPDVQDIEKVGLKGEVFSMVKAHDMASFYETLVAESVL--------------------EM 61 (385)
Q Consensus 2 ~~~~~~~p~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ik~~~m~~~y~~~~~~~~~--------------------~~ 61 (385)
|+.+.++|++.++++.|+++++.+++...+++.+.+++.|++++|+|||+.+|+++++ |.
T Consensus 15 d~~~~k~P~~~la~~~f~l~~~~~~~~~~~~~~~~l~~~ik~~~ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 94 (429)
T 4b4t_R 15 DPTVNRVPNYEVSEKAFLLTQSKVSIEQRKEAAEFVLAKIKEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKF 94 (429)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTT
T ss_pred CcccccCCChHHHHHHHHhcCCCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchH
Confidence 6778899999999999999988776655566666799999999999999999998753 68
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHH
Q 016653 62 DQSVLDSMRTKIEDELKKLDDRIADAEE-NLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYT 140 (385)
Q Consensus 62 D~~~~~~~~~~~~~~l~~Le~~l~~~~~-n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~ 140 (385)
|++|++.++++|+.+++++++.++.+++ +.++.++|+++.+||+||+++||+++|.++|.+++++|++++++++++|++
T Consensus 95 d~~~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~ 174 (429)
T 4b4t_R 95 DQELYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTI 174 (429)
T ss_dssp CCSSCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 9999999999999999999999999876 778888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHH
Q 016653 141 LQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTV 220 (385)
Q Consensus 141 i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~~~~Y~~ 220 (385)
+|++++.+||.++..+++|++..++++++|++++++++|.|+++++.|+|.+|+++|++++++|++.+.+++.++++|++
T Consensus 175 irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~ 254 (429)
T 4b4t_R 175 ARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYAS 254 (429)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCChhHHHhhccCChHHHHHhcCcch---HHHHHHHHHhccHHHHHHHHH-HhHHHhhhchhHhHhHHHHHHHHH
Q 016653 221 LTSIISLDRVSLKQKVVDAPEILTVIGKIPY---LSEFLNSLYDCQYKSFFSAFA-GLTEQIKLDRYLYPHFRYYMREVR 296 (385)
Q Consensus 221 l~al~s~~R~~lk~~v~~~~e~~~~l~~~p~---~~~li~~f~~~~y~~~~~~L~-~~~~~l~~D~~l~~h~~~l~~~iR 296 (385)
||++++++|++++.+|+++++++.+++..|. +.+++.+|++++|..|++.+. .....+..|+|+++|++.|+++||
T Consensus 255 l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~~ir 334 (429)
T 4b4t_R 255 VTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVREMR 334 (429)
T ss_dssp HHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998886 466799999999999988754 456679999999999999999999
Q ss_pred HHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCCCchhHHHHHHHHhhHHHHHHH
Q 016653 297 TVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRI 376 (385)
Q Consensus 297 ~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~g~~l~~r~ 376 (385)
.+++.||++||++|+|++||+.||+|++++|++|++||.+|+|+||||+++|+|++++||+++++|++++++||.|+||+
T Consensus 335 ~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~Ll~ri 414 (429)
T 4b4t_R 335 RKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKL 414 (429)
T ss_dssp HHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC----------------------
T ss_pred HHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhcC
Q 016653 377 QKLSRVIDL 385 (385)
Q Consensus 377 q~l~~~~~~ 385 (385)
|||+++||+
T Consensus 415 qkl~~~i~l 423 (429)
T 4b4t_R 415 QKYGAAVRL 423 (429)
T ss_dssp ---------
T ss_pred HHHHHHHhh
Confidence 999999985
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=1.7e-46 Score=368.96 Aligned_cols=274 Identities=15% Similarity=0.179 Sum_probs=234.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC-CChhhhhhh
Q 016653 101 LAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG-GDWERKNRL 176 (385)
Q Consensus 101 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~-~~~~~~~~l 176 (385)
.+||++|++.|+|++|++++.+++.+|+. ..+.+++++..++++...+|+..++..+.+|++..++. ++|..++++
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 48999999999999999999999999966 56889999999999999999999999999999998875 899999999
Q ss_pred hHHHHHhcc-ccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHHhhCChhHHHhhccCChHHHHHhcCcch---H
Q 016653 177 KVYEGLYCM-STRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPY---L 252 (385)
Q Consensus 177 ~~~~gl~~l-~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~~~~Y~~l~al~s~~R~~lk~~v~~~~e~~~~l~~~p~---~ 252 (385)
++|+|++++ .+|+|++|+++|++++.+|+..+...+.++++|++||+|++++|.+++. ++.++.+..+ ..|. +
T Consensus 183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~-~l~~~~~~~~--~~pei~~l 259 (394)
T 3txn_A 183 DLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQ-LVSGKLAITY--SGRDIDAM 259 (394)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHH-HHHSHHHHTT--CSHHHHHH
T ss_pred HHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHH-Hhcccccccc--CCccHHHH
Confidence 999999999 9999999999999999999866555557899999999999999999975 5666655555 4454 7
Q ss_pred HHHHHHHHhccHHHHHHHHHHhHHHhhhchhHhHhHHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHH
Q 016653 253 SEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 253 ~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~ 332 (385)
++++.+|.++++..|...|..+++.+..|+|+++|++.++++||.+++.|+++||++|+|++||+.||+|++++|++|++
T Consensus 260 ~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls~~evE~~L~~ 339 (394)
T 3txn_A 260 KSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQVEKKLSQ 339 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcCHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCccceEEecCCCEEEEcCCCchhHHHHHHHHhhHHHHHHHHHhhhhhc
Q 016653 333 FIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVID 384 (385)
Q Consensus 333 lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~g~~l~~r~q~l~~~~~ 384 (385)
||.+|+|+|+||+++|+|+++++++++++|+++++. ++.++++||
T Consensus 340 lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~-------l~~ls~vVd 384 (394)
T 3txn_A 340 MILDKKFSGILDQGEGVLIVFEETPVDKTYERVLET-------IQSMGKVVD 384 (394)
T ss_dssp HHHTTSSCEEEETTTTEEEECCC-----------------------------
T ss_pred HHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHH-------HHHHHHHHH
Confidence 999999999999999999999999999999999987 556666554
No 3
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-34 Score=288.88 Aligned_cols=303 Identities=14% Similarity=0.124 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHhhCHHHHHHH--HHHHHHHHHHhCCHHHHHHHHHHHHhhh---ccchhHHHhHHHHHHHHHHhcCHHH
Q 016653 78 KKLDDRIADAEENLGESEVREA--HLAKSLFYIQIGDKEKALEQLKVTESKT---VAVGQKMDLVFYTLQLGFFYMDFDL 152 (385)
Q Consensus 78 ~~Le~~l~~~~~n~~~~~ir~a--~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~~~~id~~l~~i~~~i~~~~~~~ 152 (385)
..+...++.++++.+..|+.++ ...||++|.+.|++.+|.+.+..+...| .+...++++++.++|+++..+||..
T Consensus 116 ~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~ 195 (445)
T 4b4t_P 116 ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQ 195 (445)
T ss_dssp HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444445556677777665555 7899999999999999999999988554 3456789999999999999999999
Q ss_pred HHhHHHHHHHH-HhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccccCCcCccC-CHhHHHHHHHHHHHhh---C
Q 016653 153 ISKSIDKAKSL-FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELF-PYDTFIFYTVLTSIIS---L 227 (385)
Q Consensus 153 ~~~~i~ka~~~-~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~-~~~~~~~Y~~l~al~s---~ 227 (385)
+...++|++.. ....++|+.+.+++.|.|.+++++|+|.+|+++|++++.++...+.- ....++.|+++|.+++ .
T Consensus 196 a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~ 275 (445)
T 4b4t_P 196 ATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGN 275 (445)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred HHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCc
Confidence 99999999875 45567899999999999999999999999999999999887532211 1234567777777775 3
Q ss_pred ChhHHHhhccCChHHHHHhcCcchHHHHHHHHHhccHHHHHHHHHHhHHHhhhchhH------hHhHHHHHHHHHHHHHH
Q 016653 228 DRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYL------YPHFRYYMREVRTVVYS 301 (385)
Q Consensus 228 ~R~~lk~~v~~~~e~~~~l~~~p~~~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l------~~h~~~l~~~iR~~~~~ 301 (385)
.|+++..++..++ .++..|.++.++.+|.++++..|...+..+.+.+..|++. ..|...+.++++..++.
T Consensus 276 ~~~~ll~~~~~~~----~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~L~~~v~ehnl~ 351 (445)
T 4b4t_P 276 LQNDLIHKIQNDN----NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHWEDLQKRVIEHNLR 351 (445)
T ss_dssp TTHHHHHSHHHHS----SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcc----cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHHHHHHHHHHHHHHH
Confidence 4556555443322 2345688999999999999999999999998889888877 78999999999999999
Q ss_pred HhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCCCchhHHHHHHHHhhHHHHHHHHHhhh
Q 016653 302 QFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSR 381 (385)
Q Consensus 302 qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~g~~l~~r~q~l~~ 381 (385)
.+.+||++|++++||+.||+|++++|++|++||.+|+|+|+||+++|+|++.++.+.+..+.+.....+.|++.+.+.+.
T Consensus 352 ~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~~~l~~W~~~i~~l~~~v~k~~~ 431 (445)
T 4b4t_P 352 VISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSSQLLNEWSHNVDELLEHIETIGH 431 (445)
T ss_dssp HHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC-----------------------------
T ss_pred HHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888888888888888889888888877
Q ss_pred hhc
Q 016653 382 VID 384 (385)
Q Consensus 382 ~~~ 384 (385)
.|.
T Consensus 432 lI~ 434 (445)
T 4b4t_P 432 LIT 434 (445)
T ss_dssp ---
T ss_pred HHH
Confidence 663
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-30 Score=253.32 Aligned_cols=282 Identities=14% Similarity=0.185 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc-CCCh
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDW 170 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~-~~~~ 170 (385)
.....+..||.+|.+.|+|++|.+++.++...+.. ....++.++.+++++...|||..+...+.++...... ..++
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 212 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPT 212 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCch
Confidence 34567899999999999999999999998876633 4567899999999999999999999999999987554 3456
Q ss_pred hhhhhhhHHHHHhccccCCHHHHHHHHHhccccCCcCccC----CHhHHHHHHHHHHHhhCChhHHHhhccCChHHHHHh
Q 016653 171 ERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELF----PYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVI 246 (385)
Q Consensus 171 ~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~----~~~~~~~Y~~l~al~s~~R~~lk~~v~~~~e~~~~l 246 (385)
..++.+..+.|.++.+.++|.+|.++|.+++.++...+.. .+...+.|+++|.+.+..+.+... ++.+++.....
T Consensus 213 ~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~ 291 (434)
T 4b4t_Q 213 QTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKN-ILNAKYTKETY 291 (434)
T ss_dssp HHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHCSSSSTTC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHh-HHHHHHHHHHh
Confidence 7789999999999999999999999999998776533222 234678899999999987766543 44444433322
Q ss_pred --cCcchHHHHHHHHHhccHHHHHHHHHHhHHHhhhchhHhHhHHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChH
Q 016653 247 --GKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVE 324 (385)
Q Consensus 247 --~~~p~~~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~ 324 (385)
...|.+..++.+|.++++..|...+..+...+..|+++..|+..+.+.+|..++.++++||++|++++||+.||+|++
T Consensus 292 ~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~ 371 (434)
T 4b4t_Q 292 QSRGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQ 371 (434)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHH
T ss_pred cchhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHH
Confidence 134668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCccceEEecCCCEEEEcCCCchhHHHHHHHHhhHHHHHHHHHhhhhhc
Q 016653 325 FIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVID 384 (385)
Q Consensus 325 ~iE~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~g~~l~~r~q~l~~~~~ 384 (385)
++|++|++||.+|+|+|+||+++|+|++.+++.++..|+++++. +++|+++||
T Consensus 372 ~~E~~l~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l~~-------~~~l~~~vd 424 (434)
T 4b4t_Q 372 QVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSALEL-------VGQLNKVVD 424 (434)
T ss_dssp HHHHHHHHHHHHTSSCCEEETTTTEEECC-------------------------------
T ss_pred HHHHHHHHHHhCCCcceecccccCeEeeCCCcchhHHHHHHHHH-------HHHHHHHHH
Confidence 99999999999999999999999999999999999999999987 455555554
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=1.5e-20 Score=185.87 Aligned_cols=259 Identities=14% Similarity=0.126 Sum_probs=190.1
Q ss_pred HHHHHhCCHHHHHHHHHHHHhhhcc--------------chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCCh
Q 016653 105 LFYIQIGDKEKALEQLKVTESKTVA--------------VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW 170 (385)
Q Consensus 105 ~~~~~~Gd~~~A~~~~~~~~~~~~~--------------~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~ 170 (385)
....+..|.++|++.+..+...... ....+-+...+.+..+..+|...+...+++++..++..++|
T Consensus 84 ~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~ 163 (393)
T 4b4t_O 84 ASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSI 163 (393)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCc
Confidence 3456788999999999887654311 13356677788899999999999999999999999987777
Q ss_pred hhhhhhhHH--HHHhccccCCHHHHHHHHHhccccCCcCccCCHhH---HHHHHHHHHHhh---CChhHHHhhccCChHH
Q 016653 171 ERKNRLKVY--EGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDT---FIFYTVLTSIIS---LDRVSLKQKVVDAPEI 242 (385)
Q Consensus 171 ~~~~~l~~~--~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~---~~~Y~~l~al~s---~~R~~lk~~v~~~~e~ 242 (385)
+.+...++| .|.++...++|..+...++..+.+++..+.++..+ .+..+++|++.+ ..+++|.. .|.+
T Consensus 164 ~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~----~p~i 239 (393)
T 4b4t_O 164 PLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLH----HPIM 239 (393)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHH----SCCT
T ss_pred cHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhC----ChHH
Confidence 665555555 67788889999999999998887776555556553 344555666664 34455543 3333
Q ss_pred HHHh--cCcchHHHHHHHHHhccHHHHHHHHHHhHHHhhhchhHhHhHHHHHHHHHHHHHHHhc--cccccccHHHHHHH
Q 016653 243 LTVI--GKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFL--ESYKSVTIEAMAKA 318 (385)
Q Consensus 243 ~~~l--~~~p~~~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~iR~~~~~qy~--~pY~~I~l~~mA~~ 318 (385)
.... ...+++.+++.+|..+++..|...+... ....+++..|...+.+.+|..++.+.+ +||++|+++.||+.
T Consensus 240 ~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~---~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~ 316 (393)
T 4b4t_O 240 ETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQ---ISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKA 316 (393)
T ss_dssp TSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHH---HHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHH
T ss_pred HHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHh---hhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHH
Confidence 3321 1234689999999999999998776554 345689999999999999999999876 67899999999999
Q ss_pred hCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCCCchhHHHHHHHHhhH
Q 016653 319 FGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGD 370 (385)
Q Consensus 319 fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~g~ 370 (385)
+|+|++++|.+++++|.+|+|+|+||+++|+|++....+|.-.-+++-...+
T Consensus 317 l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~ 368 (393)
T 4b4t_O 317 THLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKD 368 (393)
T ss_dssp HTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC------------------
T ss_pred hCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999876666544444443333
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.61 E-value=9.4e-15 Score=131.18 Aligned_cols=173 Identities=13% Similarity=0.190 Sum_probs=138.6
Q ss_pred hhhhhhhHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHHhhCChhHHHhhccCChHHHHHhcCcc
Q 016653 171 ERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIP 250 (385)
Q Consensus 171 ~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~~~~Y~~l~al~s~~R~~lk~~v~~~~e~~~~l~~~p 250 (385)
..+.+...|.|.+++.+++|.+|.+.|.+++..........-..+++|++.+.|+...-. +.++.+--+..
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP--------~~~ll~~~~~~- 81 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP--------TVELLKKYHLM- 81 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE--------CHHHHHHTTCG-
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC--------CHHHhhhCchh-
Confidence 346778899999999999999999999999876543222234478999999999985321 11111111122
Q ss_pred hHHHHHHHHHhccHHHHHHHHHHhHHHhhhchhHhHhHHHHHHHHHHHHHHHhcc------ccccccHHHHHHHhC----
Q 016653 251 YLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLE------SYKSVTIEAMAKAFG---- 320 (385)
Q Consensus 251 ~~~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~iR~~~~~qy~~------pY~~I~l~~mA~~fg---- 320 (385)
.+.+++.|+-.+|+..|.+.|+..+ |.|+..++-.+++.+|..++...++ +|++|+++.++.+++
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~-----~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~ 156 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHE-----AFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQV 156 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTH-----HHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhH-----HHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC
Confidence 4779999999999999999999876 4666777667788888888888877 899999999999995
Q ss_pred --CChHHHHHHHHHHHhCCccceEEecCCCEEEEcCCCc
Q 016653 321 --VTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDA 357 (385)
Q Consensus 321 --~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~d~ 357 (385)
++.+++|..+++||.+|.|+|+||..+|+++..+.++
T Consensus 157 ~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~p 195 (203)
T 3t5x_A 157 EDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNP 195 (203)
T ss_dssp TTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCS
T ss_pred CCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCC
Confidence 4899999999999999999999999999998877654
No 7
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.4e-14 Score=145.20 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=169.5
Q ss_pred HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccccCCcCccC--
Q 016653 133 KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELF-- 210 (385)
Q Consensus 133 ~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~-- 210 (385)
..-+.-.++|.++..+.++.+...++|+. .++.........+...|.|..++.+++|.+|.++|..++..-......
T Consensus 230 qa~l~nllLRnYL~~~~y~qA~~lvsk~~-fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~g 308 (523)
T 4b4t_S 230 KAMLINLILRDFLNNGEVDSASDFISKLE-YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHC-SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSH
T ss_pred hHHHHHHHHHHHHccCcHHHHHHHHhcCc-CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhh
Confidence 44566678999999999999999999985 344333445678999999999999999999999999987543222211
Q ss_pred CHhHHHHHHHHHHHhhCChhHHHhhccCChHHHHHhcCcchHHHHHHHHHhccHHHHHHHHHHhHHHhhhchhHhHhHHH
Q 016653 211 PYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRY 290 (385)
Q Consensus 211 ~~~~~~~Y~~l~al~s~~R~~lk~~v~~~~e~~~~l~~~p~~~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l~~h~~~ 290 (385)
-...+.+|+++|.|+..+-.+. .++..+..++. ..++.+++++|-.+|...|...+..++..+..|--. ..+..
T Consensus 309 fr~~a~K~lI~V~LLlG~iP~r--~lf~q~~l~~~---L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty-~LI~r 382 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLLMGDIPEL--SFFHQSNMQKS---LLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-QLCVR 382 (523)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCH--HHHTTTSCHHH---HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT-HHHHH
T ss_pred HHHHHHHHHHhHHhhcCCCCCh--HHhhchhHHHH---HHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChh-HHHHH
Confidence 1236678999999986432111 12333332221 234678999999999999999999999998888543 56777
Q ss_pred HHHHHHHHHHHHhccccccccHHHHHHHhCC-ChHHHHHHHHHHHhCCccceEEecCCCEEEEcC
Q 016653 291 YMREVRTVVYSQFLESYKSVTIEAMAKAFGV-TVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 354 (385)
Q Consensus 291 l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~-s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~ 354 (385)
+.+++....+.+...+|++|+++.+|..+|+ +++++|.-+++||.+|.|+|+||+.+|+|.+..
T Consensus 383 Lr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske 447 (523)
T 4b4t_S 383 LRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTE 447 (523)
T ss_dssp HHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCS
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCc
Confidence 7888888889999999999999999999999 478899999999999999999999999999864
No 8
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.57 E-value=1.1e-15 Score=117.19 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCCCch
Q 016653 287 HFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAK 358 (385)
Q Consensus 287 h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~d~~ 358 (385)
|...|.+.+...++..|.+||++|+|++||+.||+|++++|++|++||.+|+|+|+||+++|+|++.++++.
T Consensus 8 ~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~ 79 (84)
T 1ufm_A 8 GSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79 (84)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCC
T ss_pred cHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccC
Confidence 344455555566666777889999999999999999999999999999999999999999999999887753
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.31 E-value=7.6e-11 Score=117.58 Aligned_cols=237 Identities=11% Similarity=0.047 Sum_probs=167.6
Q ss_pred CHHHHHHHHHHHHhhhccc----------hhHH---HhHHHHHHHHHHhcCHHHHHhHHHHHHHHHh----cCCChhhhh
Q 016653 112 DKEKALEQLKVTESKTVAV----------GQKM---DLVFYTLQLGFFYMDFDLISKSIDKAKSLFE----EGGDWERKN 174 (385)
Q Consensus 112 d~~~A~~~~~~~~~~~~~~----------~~~i---d~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~----~~~~~~~~~ 174 (385)
..++|...+.++...|.+. +.+. -+.-.++++++-.++...+...+.-.+..-. +.-....+.
T Consensus 141 ~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v 220 (455)
T 3t5v_B 141 FLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQI 220 (455)
T ss_dssp HHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceE
Confidence 4677777787777666321 1222 2344557788888888877766665554310 011223568
Q ss_pred hhhHHHHHhccccCCHHHHHHHHHhcccc-CCcC-----ccCCHhHHHHHHHHHHHhhCChh--HHHhhccCChHHHHHh
Q 016653 175 RLKVYEGLYCMSTRNFKKAASLFLDSIST-FTTY-----ELFPYDTFIFYTVLTSIISLDRV--SLKQKVVDAPEILTVI 246 (385)
Q Consensus 175 ~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t-~~~~-----e~~~~~~~~~Y~~l~al~s~~R~--~lk~~v~~~~e~~~~l 246 (385)
+...|.|.+++.+++|.+|.+.|.+++.. .... ....-..+++|++.+.|+...-. .+-.+.. .+.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~ll~k~~-~~~----- 294 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKMVKWGPLRPFL-SQE----- 294 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHHHGGGS-CHH-----
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHHHcccc-hHH-----
Confidence 89999999999999999999999998865 2211 01123467999999999985321 1111111 011
Q ss_pred cCcchHHHHHHHHHhccHHHHHHHHHHhHHHhhhchh---HhHhHH-HHHHHHHHHHHHHhcccc--ccccHHHHHHHhC
Q 016653 247 GKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRY---LYPHFR-YYMREVRTVVYSQFLESY--KSVTIEAMAKAFG 320 (385)
Q Consensus 247 ~~~p~~~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~---l~~h~~-~l~~~iR~~~~~qy~~pY--~~I~l~~mA~~fg 320 (385)
-.|-+..++.|+-.+|+..|.+.|+.++..+..|-. +-...+ ..++++..+++..++-|| ++|+++.++.+++
T Consensus 295 -L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~ 373 (455)
T 3t5v_B 295 -TIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQ 373 (455)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHh
Confidence 123366899999999999999999999886555533 223333 335666666767788889 8999999999997
Q ss_pred ---------------------CChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 321 ---------------------VTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 321 ---------------------~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
++.+++|-.+++||.+|.|.|+||..+|+++..+.
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 374 LSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred hccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 58899999999999999999999999999998876
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.49 E-value=5.4e-07 Score=77.85 Aligned_cols=99 Identities=13% Similarity=0.180 Sum_probs=84.7
Q ss_pred chHHHHHHHHHhccHHHHHHHHHHhHHHhhhchhHhHhHHHHHHHHHHHHHHHhccccccccHHHHHHHhCCC-hHHHHH
Q 016653 250 PYLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVT-VEFIDV 328 (385)
Q Consensus 250 p~~~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s-~~~iE~ 328 (385)
+++.++++.|...+|..|...-. .+ |-|. ....+.||...+...+.-.+.++.+.+++.++++ ++++|.
T Consensus 60 ~~~~~LL~iF~~G~~~~y~~~~~----~~---p~L~---~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~ 129 (169)
T 3chm_A 60 SVYLDLLRLFAHGTWGDYKCNAT----RL---PHLS---PDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELED 129 (169)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHGG----GS---CCCC---HHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHH
T ss_pred hHHHHHHHHHhcCCHHHHHHhHH----hC---cchH---HHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHH
Confidence 45899999999999998865211 11 2233 7888999999999999889999999999999999 999999
Q ss_pred HHH-HHHhCCccceEEecCCCEEEEcCCCch
Q 016653 329 ELS-RFIAAGKLHCKIDKVAGVLETNRPDAK 358 (385)
Q Consensus 329 ~L~-~lI~~g~l~akID~~~giv~~~~~d~~ 358 (385)
|+. +.|..|-|.||||+++++|++....+|
T Consensus 130 lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R 160 (169)
T 3chm_A 130 FLINECMYAGIVRGKLDQLKRCFEVPFAAGR 160 (169)
T ss_dssp HHHHTHHHHTSEEEEEETTTTEEEEEEECCT
T ss_pred HHHHHHHHhCCeEEEEcCcCCEEEEEeecCC
Confidence 999 999999999999999999998865444
No 11
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.21 E-value=0.00048 Score=63.83 Aligned_cols=188 Identities=11% Similarity=0.131 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchh---HHHhHHHHHHHHHHh-cCHHHHHhHHHHHHHHHhcC
Q 016653 92 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ---KMDLVFYTLQLGFFY-MDFDLISKSIDKAKSLFEEG 167 (385)
Q Consensus 92 ~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---~id~~l~~i~~~i~~-~~~~~~~~~i~ka~~~~~~~ 167 (385)
-......++..+|..|.+.|++++|.++|.+..+.....+. ....+.++-.+.... |+++.+..+..+|-.+....
T Consensus 72 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~ 151 (292)
T 1qqe_A 72 NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC
Confidence 34455678999999999999999999999998876644333 344555666666665 99999999999998876544
Q ss_pred CChhhhhhhhHHHHHhccccCCHHHHHHHHHhccccCCcCccC--CHhHHHHHHHHHHHhhCChhHHHhhccCChHHHHH
Q 016653 168 GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELF--PYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTV 245 (385)
Q Consensus 168 ~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~--~~~~~~~Y~~l~al~s~~R~~lk~~v~~~~e~~~~ 245 (385)
+++...+....--|..+...|+|.+|...|-.+.......... +..+...-.++|-....+-.+-.. .+.+.
T Consensus 152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~------~~~~a 225 (292)
T 1qqe_A 152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR------TLQEG 225 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH------HHHGG
T ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH------HHHHH
Confidence 4433333333345778889999999999998876543222111 111222223333333322211110 12222
Q ss_pred hcCcc---------hHHHHHHHHHhccHHHHHHHHHHhHHHhhhchhHh
Q 016653 246 IGKIP---------YLSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLY 285 (385)
Q Consensus 246 l~~~p---------~~~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l~ 285 (385)
++..| .+..++.++...+...+.+++..+...+..|+...
T Consensus 226 l~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~ 274 (292)
T 1qqe_A 226 QSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKI 274 (292)
T ss_dssp GCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHH
T ss_pred HhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHH
Confidence 33233 24566777766777788888888877777777653
No 12
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.05 E-value=9.6e-05 Score=67.02 Aligned_cols=198 Identities=11% Similarity=0.054 Sum_probs=115.1
Q ss_pred HHHHHHHhcCHHHHHhHHHHHHHHHhcCC--Ch-----hh--hhhhhHHHHHhccccCCHHHHHHHHHhccccCCcC--c
Q 016653 140 TLQLGFFYMDFDLISKSIDKAKSLFEEGG--DW-----ER--KNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTY--E 208 (385)
Q Consensus 140 ~i~~~i~~~~~~~~~~~i~ka~~~~~~~~--~~-----~~--~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~--e 208 (385)
.++-.+..+|++.+.+.+.+++-.+...+ .| +. .-.+-..+++..+..+|...--+++-..-+-|... +
T Consensus 13 ~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~ 92 (229)
T 4b0z_A 13 HLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVP 92 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCC
Confidence 34444455566666555655554332210 01 11 11222235667777777654333332221111110 1
Q ss_pred cCCHhHHHHHHHHHHHhhCChhHHHhhc--cCChHHHHHhcCcchH---HHHHHHHHhccHHHHHHHHHHhHHHhhhchh
Q 016653 209 LFPYDTFIFYTVLTSIISLDRVSLKQKV--VDAPEILTVIGKIPYL---SEFLNSLYDCQYKSFFSAFAGLTEQIKLDRY 283 (385)
Q Consensus 209 ~~~~~~~~~Y~~l~al~s~~R~~lk~~v--~~~~e~~~~l~~~p~~---~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~ 283 (385)
.-....+..|-+|.-+.+.+..++..-+ +...+ .+...|.+ .++-+++..++|..|++.+... ..+.
T Consensus 93 s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~---~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~-----p~~~ 164 (229)
T 4b0z_A 93 SSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKS---LFERDPYVEWVISLEQNVMEGAFDKVASMIRSC-----NFPE 164 (229)
T ss_dssp CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTT---HHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTC-----CCGG
T ss_pred CccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHH---HhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC-----ccch
Confidence 1123467777777777777666543211 11111 11234544 4566688899999999988764 2233
Q ss_pred HhHhHHHHHHHHHHHHHHHhccccccccHHHHHHHhCC-ChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 284 LYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGV-TVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 284 l~~h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~-s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
.....+.+...+|..++....++|.+|+++.+++.||+ |+++++..+.+. +=.|+ +|+|++.
T Consensus 165 ~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~------gw~i~--dg~i~F~ 227 (229)
T 4b0z_A 165 FSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER------GWDIR--DGVIYFP 227 (229)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH------TCEEE--TTEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc------CCEEe--CCEEecC
Confidence 45567889999999999999999999999999999999 566776666652 12443 6666654
No 13
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.94 E-value=0.00049 Score=55.74 Aligned_cols=115 Identities=17% Similarity=0.005 Sum_probs=87.5
Q ss_pred HHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 016653 88 EENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (385)
Q Consensus 88 ~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~ 164 (385)
...........++..+|..|...|++++|.+.+.+..+.... .......+..+..+....|+++.+...+.++-...
T Consensus 40 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 40 KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 333344555678999999999999999999999998766532 23345566777778888899999999999998887
Q ss_pred hcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 165 EEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 165 ~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
...+++.........-|..+...|+|..|...|-.+..
T Consensus 120 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 120 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66556555555566677788899999999988877653
No 14
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.94 E-value=0.00019 Score=58.13 Aligned_cols=105 Identities=15% Similarity=0.037 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH-hcCCChhhh
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF-EEGGDWERK 173 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~-~~~~~~~~~ 173 (385)
+...++..+|..+++.|+|++|+++|.+..+..+. ....+.++-.+.+..|+|+.+.....++-.+- +...++...
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~---~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS---NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 44677899999999999999999999999876543 24566777788888999999999999988763 334455555
Q ss_pred hhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 174 ~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
++.-...|..+...++|..|.+.|-.++.
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556678889999999999999877653
No 15
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.85 E-value=0.00062 Score=58.18 Aligned_cols=129 Identities=9% Similarity=0.015 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccch----hHHHhHHHHHHHHHHhcCH
Q 016653 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG----QKMDLVFYTLQLGFFYMDF 150 (385)
Q Consensus 75 ~~l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~----~~id~~l~~i~~~i~~~~~ 150 (385)
+-+..++.-+.-++..........++..+|..|...|++++|.+++.+..+.+...+ .......++..+....|++
T Consensus 44 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 123 (203)
T 3gw4_A 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH
Confidence 334444555554555555666778899999999999999999999999887753322 3456677777788888999
Q ss_pred HHHHhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 151 DLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 151 ~~~~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
+.+...+.++-......+++..........|..+...|+|.+|...|-+++..
T Consensus 124 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999998887666666555555566788888999999999999887654
No 16
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.69 E-value=0.00088 Score=54.17 Aligned_cols=108 Identities=12% Similarity=-0.025 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc---hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChh
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 171 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~ 171 (385)
....++..+|..|...|++++|.+++.+..+.+... .........+..+....|+++.+...+.++-......+++.
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 446779999999999999999999999988766432 23345667777788888999999999999998877666666
Q ss_pred hhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 172 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 172 ~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.........|..+...++|.+|...|-.++.
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 5666666688889999999999999987654
No 17
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.64 E-value=0.0044 Score=57.62 Aligned_cols=125 Identities=12% Similarity=0.057 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccch---hHHHhHHHHHHHHHHhcCHHHHH
Q 016653 78 KKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG---QKMDLVFYTLQLGFFYMDFDLIS 154 (385)
Q Consensus 78 ~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~---~~id~~l~~i~~~i~~~~~~~~~ 154 (385)
+-++.-+.-+....-......++..+|..|...|++++|.++|.+..+.....+ .....+.++-.+... |+++.+.
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 333333333444444456677899999999999999999999999877653332 234455555555555 9999999
Q ss_pred hHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 155 KSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 155 ~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
.++.+|-.+....+++........--|..+...|+|.+|...|-.++..
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 184 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999887655555444444444677888999999999999887643
No 18
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.54 E-value=0.012 Score=54.71 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccch---hHHHhHHHHHHHHHHhcCHHHHH
Q 016653 78 KKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG---QKMDLVFYTLQLGFFYMDFDLIS 154 (385)
Q Consensus 78 ~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~---~~id~~l~~i~~~i~~~~~~~~~ 154 (385)
+-++.-+.-+.+..-......++..+|..|.. |++++|.++|.+..+.....+ .....+.++..+....|+++.+.
T Consensus 97 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 175 (307)
T 2ifu_A 97 QYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAA 175 (307)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 33444444444443444566789999999999 999999999999887764432 33567777888888999999999
Q ss_pred hHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhcc
Q 016653 155 KSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 155 ~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
..+.++-......+++..........|+.++..|+|..|...|-.++
T Consensus 176 ~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 176 ASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 99999988754433332233334446778888899999999998876
No 19
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.42 E-value=0.0079 Score=54.62 Aligned_cols=126 Identities=10% Similarity=-0.017 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHH
Q 016653 77 LKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLI 153 (385)
Q Consensus 77 l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~~id~~l~~i~~~i~~~~~~~~ 153 (385)
++.++.-+.-.+..........++..+|..|...|++++|.+++.+..+.+.. .......+..+..+....|+++.+
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 33333334434444445566678999999999999999999999998876533 233445777778888889999999
Q ss_pred HhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 154 SKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 154 ~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
...+.++-......+++..........|..+...|+|..|...|-.+..
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 9999999888765555555555556678888999999999999877654
No 20
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.41 E-value=0.0017 Score=52.29 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChh
Q 016653 92 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 171 (385)
Q Consensus 92 ~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~ 171 (385)
+..+...++..+|..|++.|+|++|.++|.+..+.... ..+.+.+.-.+....|++..+.....++-.+-. .+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~-- 80 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE---NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS--KF-- 80 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC--
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh--hh--
Confidence 45566788999999999999999999999998876532 346677777888889999999999998876511 11
Q ss_pred hhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 172 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 172 ~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
...-...|..+...|+|.+|...|-.++.
T Consensus 81 --~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 81 --IKGYIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12234578888999999999999987753
No 21
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.39 E-value=0.0036 Score=48.71 Aligned_cols=103 Identities=14% Similarity=0.098 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc-CCChhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWERKNR 175 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~-~~~~~~~~~ 175 (385)
..+++.+|..++..|++++|.++|.+....... ....+..+..+....|++..+...+.++-..... ..++.....
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 80 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence 467899999999999999999999998876532 2456677777888899999999999998876432 233333344
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.....|..+...|+|..|...|-.+..
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555678888999999999999987764
No 22
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.38 E-value=0.026 Score=50.51 Aligned_cols=105 Identities=13% Similarity=0.191 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..+++.+|..+++.|++++|.+.|.++.+.........+..+.+..+....|+|..+...+.++-...-. ++ .....
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~--~~-~~~~a 91 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI--DP-RVPQA 91 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CT-THHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC--Cc-hhHHH
Confidence 4678999999999999999999999998877665556788888889999999999999999887765211 11 11223
Q ss_pred hHHHHHhccc--------cCCHHHHHHHHHhccccC
Q 016653 177 KVYEGLYCMS--------TRNFKKAASLFLDSISTF 204 (385)
Q Consensus 177 ~~~~gl~~l~--------~r~~~~Aa~~f~e~~~t~ 204 (385)
....|..++. .|+|..|...|-.++..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 3446777777 999999999988876544
No 23
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.36 E-value=0.024 Score=53.33 Aligned_cols=129 Identities=17% Similarity=0.042 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHH
Q 016653 75 DELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFD 151 (385)
Q Consensus 75 ~~l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~~id~~l~~i~~~i~~~~~~ 151 (385)
+-++-++.-++-.........+..++..+|..|...|++++|.+++.+..+.... .......+..+..+....|++.
T Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHH
Confidence 3344445555545555555666778999999999999999999999998766533 2234567777788888899999
Q ss_pred HHHhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 152 LISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 152 ~~~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
.+...+.++-......+++.........-|..+...|+|.+|...|-.++..
T Consensus 285 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 285 KAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999998887665555444555556777888999999999999887643
No 24
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.35 E-value=0.0044 Score=59.15 Aligned_cols=123 Identities=12% Similarity=0.032 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc---hhHHHhHHHHHHHHHHhcCHHHHHhH
Q 016653 80 LDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMDFDLISKS 156 (385)
Q Consensus 80 Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~~id~~l~~i~~~i~~~~~~~~~~~ 156 (385)
++.-++-............++..+|..|...|++++|.+++.+..+.+... .........+..+....|++..+...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 333333333444445566789999999999999999999999988766432 23344677778888889999999999
Q ss_pred HHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 157 IDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 157 i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
+.++-......+++..........|..+...|+|.+|..+|-.++.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999888765555544555556678888999999999999887653
No 25
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.35 E-value=0.0065 Score=55.19 Aligned_cols=127 Identities=17% Similarity=0.036 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc---hhHHHhHHHHHHHHHHhcCHHHH
Q 016653 77 LKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMDFDLI 153 (385)
Q Consensus 77 l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~~id~~l~~i~~~i~~~~~~~~ 153 (385)
++-++.-++-............++..+|..|...|++++|.+++.+..+.+... .........+..+....|+++.+
T Consensus 203 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 282 (338)
T 3ro2_A 203 VIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKA 282 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHH
Confidence 334444444444544556666789999999999999999999999987665332 23356677778888889999999
Q ss_pred HhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 154 SKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 154 ~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
...+.++-......+++..........|..+...|+|.+|...|-.++..
T Consensus 283 ~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 283 IDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999998886655555545555556777888999999999999877543
No 26
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.33 E-value=0.0091 Score=56.31 Aligned_cols=126 Identities=10% Similarity=-0.020 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHH
Q 016653 77 LKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLI 153 (385)
Q Consensus 77 l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~~id~~l~~i~~~i~~~~~~~~ 153 (385)
++.++.-++-.+..........++..+|..|...|++++|.+++.+..+.+.. .......+..+..+....|+++.+
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 33444444444444445666778999999999999999999999998876533 233445777778888899999999
Q ss_pred HhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 154 SKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 154 ~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
...+.++-......+++..........|..+...|+|.+|...|-.+..
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 9999999888665555555555555677888899999999999887653
No 27
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.32 E-value=0.0085 Score=57.10 Aligned_cols=150 Identities=9% Similarity=-0.071 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcC
Q 016653 74 EDELKKLDDRIADAEENLG-ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMD 149 (385)
Q Consensus 74 ~~~l~~Le~~l~~~~~n~~-~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~~id~~l~~i~~~i~~~~ 149 (385)
..-++-++.-+.-++.... ...+..++..+|..|...|++++|.++|.++.+.+.. .........++-.+....|+
T Consensus 158 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 237 (378)
T 3q15_A 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237 (378)
T ss_dssp HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 3344445555555555443 4567788999999999999999999999998876642 22344566777778888899
Q ss_pred HHHHHhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHHhh
Q 016653 150 FDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIIS 226 (385)
Q Consensus 150 ~~~~~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~~~~Y~~l~al~s 226 (385)
++.+..++.++-......++|.. ......-|..+...|+|..|...|-.++....... .+.....+..+..+..
T Consensus 238 ~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~ly~ 311 (378)
T 3q15_A 238 DQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARS--HKFYKELFLFLQAVYK 311 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTC--CSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHh
Confidence 99999999999988765555554 55555678888999999999999988765432211 2223334555555554
No 28
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=97.31 E-value=0.00051 Score=49.74 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=53.4
Q ss_pred HHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 298 VVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 298 ~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
+.+..|++..+.|.|+.+|..||++.+++-+.|-.|..+|+|.|.||-.-+.|+....
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred HHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 3478999999999999999999999999999999999999999999999888887654
No 29
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.30 E-value=0.0035 Score=59.83 Aligned_cols=110 Identities=14% Similarity=0.007 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc----hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCC
Q 016653 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV----GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG 168 (385)
Q Consensus 93 ~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~----~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~ 168 (385)
......++..+|..|+..|++++|.+++.+..+.+... .........+-.+....|+++.+..+..++-......+
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 218 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC
Confidence 34466779999999999999999999999988766432 23445666666777788999999999999988876656
Q ss_pred ChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 169 DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 169 ~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
++.........-|..+...|+|..|..+|-.++.
T Consensus 219 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6555555556678888899999999999988765
No 30
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.27 E-value=0.002 Score=50.75 Aligned_cols=104 Identities=8% Similarity=0.013 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
.+++.+|..++..|++++|.+.|.++.....+.....+..+....+....|+++.+...+.++-... ++........
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~ 79 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY---PTHDKAAGGL 79 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTSTTHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC---CCCcccHHHH
Confidence 3578899999999999999999999887665555445777888888889999999999988876642 1211122334
Q ss_pred HHHHHhccccCCHHHHHHHHHhccccC
Q 016653 178 VYEGLYCMSTRNFKKAASLFLDSISTF 204 (385)
Q Consensus 178 ~~~gl~~l~~r~~~~Aa~~f~e~~~t~ 204 (385)
...|..+...|+|..|...|-.++..+
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 457888889999999999988876544
No 31
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=97.27 E-value=0.0047 Score=58.95 Aligned_cols=110 Identities=9% Similarity=-0.043 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc----hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCC
Q 016653 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV----GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG 168 (385)
Q Consensus 93 ~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~----~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~ 168 (385)
......++..+|..|+..|++..|.+++.+..+..... .........+-.+....|+++.+..+..++-......+
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 216 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Confidence 44556678888888888888888888888887665332 23445556666677778888888888888888766555
Q ss_pred ChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 169 DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 169 ~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
++.........-|..+...|+|..|..+|-.++.
T Consensus 217 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5554455555567778888888888888887764
No 32
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.26 E-value=0.013 Score=52.04 Aligned_cols=110 Identities=9% Similarity=-0.047 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh-----ccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC-
Q 016653 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT-----VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG- 167 (385)
Q Consensus 94 ~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~-----~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~- 167 (385)
.....++..+|..|...|++++|.++|.++.+.. .........+..+..+....|+++.+...+.++-......
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 4567789999999999999999999999988765 2234566778888888889999999999999998876442
Q ss_pred -CChhhhhhhhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 168 -GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 168 -~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
.+...........|..+...|+|.+|...|-.++..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 221223334444677888999999999999887643
No 33
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.26 E-value=0.0034 Score=53.42 Aligned_cols=107 Identities=7% Similarity=0.013 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCC-Chh
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG-DWE 171 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~-~~~ 171 (385)
...++..+|..|...|++++|.+++.+..+.+.. .......+..+-.+....|+++.+...+.++-......+ ++.
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 4577899999999999999999999998876643 233456667777788889999999999999999877666 443
Q ss_pred hhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 172 RKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 172 ~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.........|..+...|+|.+|...|-+++.
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4555556678888999999999999988754
No 34
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.18 E-value=0.0088 Score=56.96 Aligned_cols=128 Identities=16% Similarity=0.070 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc---hhHHHhHHHHHHHHHHhcCHHHH
Q 016653 77 LKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMDFDLI 153 (385)
Q Consensus 77 l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~~id~~l~~i~~~i~~~~~~~~ 153 (385)
++.++.-++-............++..+|..|...|++++|.++|.+..+..... ......+..+..+....|+++.+
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 334444444444555556666789999999999999999999999987665332 23356777778888899999999
Q ss_pred HhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccccC
Q 016653 154 SKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTF 204 (385)
Q Consensus 154 ~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~ 204 (385)
..++.++-......+++..........|..+...|+|.+|..+|-.+...+
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999999988866555544445555557778889999999999998876543
No 35
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.16 E-value=0.011 Score=53.46 Aligned_cols=111 Identities=10% Similarity=0.005 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh-----ccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC
Q 016653 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT-----VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG 167 (385)
Q Consensus 93 ~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~-----~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~ 167 (385)
......++..+|..|...|++++|.+++.++.+.. .........+..+..+....|+++.+...+.++-......
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKV 144 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence 34556789999999999999999999999988765 2234566778888888889999999999999988875432
Q ss_pred --CChhhhhhhhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 168 --GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 168 --~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
+++..........|..+...|+|.+|...|-.++..
T Consensus 145 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 145 LGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333333444455677888999999999999887543
No 36
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.16 E-value=0.011 Score=52.54 Aligned_cols=109 Identities=10% Similarity=0.013 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc-----chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC-
Q 016653 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA-----VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG- 167 (385)
Q Consensus 94 ~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~- 167 (385)
.....++..+|..|...|++++|.++|.++.+.+.. .......+..+..+....|+++.+...+.++-......
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 456778999999999999999999999998876521 24556778888888889999999999999998875432
Q ss_pred -CChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 168 -GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 168 -~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
++..........-|..+...|+|..|...|-.++.
T Consensus 162 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 162 GPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222334444567788899999999999987753
No 37
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.14 E-value=0.01 Score=53.62 Aligned_cols=109 Identities=12% Similarity=0.059 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc-----cchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC-
Q 016653 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTV-----AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG- 167 (385)
Q Consensus 94 ~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-----~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~- 167 (385)
.....++..+|..|...|++++|.+++.++.+.+. ...........+..+....|+++.+...+.++-......
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 45577899999999999999999999999887652 234556777788888889999999999999998876543
Q ss_pred -CChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 168 -GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 168 -~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
++..........-|..+...|+|.+|...|-.++.
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22222334444567788899999999999988753
No 38
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.10 E-value=0.0039 Score=57.41 Aligned_cols=96 Identities=8% Similarity=0.005 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc---cchh-HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTV---AVGQ-KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~~~-~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~ 173 (385)
.++..+|..|...|++++|.++|.++.+.+. .... ....+.++..+....|+++.+..++.++-......+++...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 3455555555555555555555555543221 1111 11344455555555555555555555555543322232223
Q ss_pred hhhhHHHHHhccccCCHHHH
Q 016653 174 NRLKVYEGLYCMSTRNFKKA 193 (385)
Q Consensus 174 ~~l~~~~gl~~l~~r~~~~A 193 (385)
+.+-...|..+...|++.+|
T Consensus 236 ~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHcCCcHHH
Confidence 33333345555555555555
No 39
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=97.09 E-value=0.015 Score=55.26 Aligned_cols=150 Identities=9% Similarity=-0.033 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc---hhHHHhHHHHHHHHHHhcC
Q 016653 74 EDELKKLDDRIADAEENLG-ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV---GQKMDLVFYTLQLGFFYMD 149 (385)
Q Consensus 74 ~~~l~~Le~~l~~~~~n~~-~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~~id~~l~~i~~~i~~~~ 149 (385)
.+-++-++.-++-++.... ...+..++..+|..|...|++++|.++|.++.+.+... ......+.++-.+....|+
T Consensus 160 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 239 (383)
T 3ulq_A 160 YFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ 239 (383)
T ss_dssp HHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC
Confidence 3344455555555555443 56667889999999999999999999999988766432 2334567777778888999
Q ss_pred HHHHHhHHHHHHHHHhcCCC-hhhhhhhhHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHHhh
Q 016653 150 FDLISKSIDKAKSLFEEGGD-WERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIIS 226 (385)
Q Consensus 150 ~~~~~~~i~ka~~~~~~~~~-~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~~~~Y~~l~al~s 226 (385)
++.+..++.++-......++ |.. ......-|..+...|+|..|...|-.++.... ....+.....+..++.+..
T Consensus 240 ~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~l~~~~~ 314 (383)
T 3ulq_A 240 YEDAIPYFKRAIAVFEESNILPSL-PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ--KAGDVIYLSEFEFLKSLYL 314 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HHTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhccchhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHh
Confidence 99999999999998766555 432 44445577788899999999999988764321 1223333344555555544
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.09 E-value=0.075 Score=46.31 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc-CCChhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWERKNR 175 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~-~~~~~~~~~ 175 (385)
..++..+|..++..|++++|.++|.++.+.. ...+.......+....|+++.+...+.++-..... ..++.....
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 4678999999999999999999999988665 22466777788888899999999999998876432 223333344
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.....|..+...++|.+|...|-.++.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555577788899999999999887764
No 41
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.04 E-value=0.0072 Score=55.55 Aligned_cols=106 Identities=8% Similarity=-0.010 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc----cchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChh
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTV----AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWE 171 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~----~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~ 171 (385)
...++..+|.+|...|++++|.++|.++.+... .......++.++..+....|+++.+..++.++-......++..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 345789999999999999999999999875442 2344556788888888899999999999999988765555544
Q ss_pred hhhhhhHHHHHhccccC-CHHHHHHHHHhcc
Q 016653 172 RKNRLKVYEGLYCMSTR-NFKKAASLFLDSI 201 (385)
Q Consensus 172 ~~~~l~~~~gl~~l~~r-~~~~Aa~~f~e~~ 201 (385)
..+.+-...|..+...| +|.+|..+|-.++
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 55666667888888888 5788888887764
No 42
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.01 E-value=0.008 Score=49.83 Aligned_cols=101 Identities=9% Similarity=-0.047 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---------------chhHHHhHHHHHHHHHHhcCHHHHHhHHHHH
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---------------VGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---------------~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka 160 (385)
....+..+|..+++.|+|++|++.|.+....+.. .......+.+...+.+..|+|..+.....++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3566899999999999999999999998876422 2334567888888888999999999999888
Q ss_pred HHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 161 KSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
-.+- ++ ..+.-...|..+...|+|..|...|-.++.
T Consensus 90 l~~~---p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 90 LKRE---ET---NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHS---TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcC---Cc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 7651 11 122334578889999999999999987653
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=96.93 E-value=0.11 Score=46.05 Aligned_cols=98 Identities=15% Similarity=0.077 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhH
Q 016653 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (385)
Q Consensus 99 a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~ 178 (385)
+++.+|..++..|++++|.+.|.++.+..... .+....+..+....|+++.+...+.++-.. ..++......-.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~ 78 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKAKSADFE 78 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhHHHHHHH
Confidence 46778888999999999999988887654322 235566666777888888888888877662 233333333445
Q ss_pred HHHHhccccCCHHHHHHHHHhccc
Q 016653 179 YEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 179 ~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
..|..+...|+|..|...|-.++.
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 577788888899888888877654
No 44
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.91 E-value=0.061 Score=44.94 Aligned_cols=97 Identities=10% Similarity=-0.089 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
...++.+|..|.+.|++++|.++|.++.+..++ ..+....+..+....|+++.+.....++..... .+ ...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~--~~----~~~ 75 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT--TS----AEA 75 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CC----HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--hh----HHH
Confidence 356899999999999999999999998876532 356777788888889999999988888766422 11 122
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
....|......++|..|...|-.+..
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~ 101 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIA 101 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34467778889999999998887654
No 45
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.90 E-value=0.0086 Score=47.85 Aligned_cols=100 Identities=14% Similarity=-0.002 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..+++.+|..++..|++++|.++|.+..+...........+..+..+....|++..+...+.++-..-. .+ ...
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 101 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GD----VKA 101 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CC----HHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cC----HHH
Confidence 456889999999999999999999999887655444567778888888899999999999888776521 11 223
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
....|..+...++|..|...|-.++.
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567788889999999999887754
No 46
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.84 E-value=0.0069 Score=50.06 Aligned_cols=96 Identities=7% Similarity=-0.071 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhh
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 174 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~ 174 (385)
+-..+++.+|..|++.|++++|.++|.++.+.... -.+....+-.+....|+++.+.....++-.+-- .+++
T Consensus 29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~--- 100 (150)
T 4ga2_A 29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLLYELEENTDKAVECYRRSVELNP--TQKD--- 100 (150)
T ss_dssp HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH---
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC--CCHH---
Confidence 33566899999999999999999999998876432 346667777788888999999999988876521 1222
Q ss_pred hhhHHHHHhccccCCHHHHHHHHHh
Q 016653 175 RLKVYEGLYCMSTRNFKKAASLFLD 199 (385)
Q Consensus 175 ~l~~~~gl~~l~~r~~~~Aa~~f~e 199 (385)
.-..-|..+...++|.+|+..|++
T Consensus 101 -~~~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 101 -LVLKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp -HHHHHHHHHHHHCSSSSHHHHHHH
T ss_pred -HHHHHHHHHHHcCChHHHHHHHHH
Confidence 122356667788999999998876
No 47
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.83 E-value=0.014 Score=52.38 Aligned_cols=108 Identities=6% Similarity=-0.053 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH--------hcCHHHHHhHHHHHHHHHhcCC
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF--------YMDFDLISKSIDKAKSLFEEGG 168 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~--------~~~~~~~~~~i~ka~~~~~~~~ 168 (385)
..+++.+|..|+..|++++|.+.|.++.....+.....+..+.+..+... .|++..+...+.++-...-...
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~ 131 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE 131 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence 57899999999999999999999999988766555556677777777777 8999999998888766521111
Q ss_pred -Chhhhhhh----------hHHHHHhccccCCHHHHHHHHHhccccC
Q 016653 169 -DWERKNRL----------KVYEGLYCMSTRNFKKAASLFLDSISTF 204 (385)
Q Consensus 169 -~~~~~~~l----------~~~~gl~~l~~r~~~~Aa~~f~e~~~t~ 204 (385)
.+....++ ....|..+...|+|..|...|-.++..+
T Consensus 132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 01111111 1456888899999999999998876544
No 48
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.015 Score=45.69 Aligned_cols=96 Identities=10% Similarity=-0.046 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..++..|++++|.+.|.+..+.... ......+...+....|+|..+...+.++-..-. .+ ...
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~ 74 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--NF----VRA 74 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--Cc----HHH
Confidence 356889999999999999999999998876543 246677778888889999999999998876521 11 223
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
....|..+...|+|.+|...|-.++
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3457888899999999999987765
No 49
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.79 E-value=0.016 Score=53.13 Aligned_cols=105 Identities=10% Similarity=-0.033 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc---cchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCC-hhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTV---AVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD-WERK 173 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~-~~~~ 173 (385)
..++.+|.+|...|++++|.+++.+..+... ........+.++..+....|+++.+..+..+|-...+..++ +...
T Consensus 116 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~ 195 (293)
T 2qfc_A 116 QWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch
Confidence 4467799999999999999999999876542 22334567777777888889999999999999987655433 2222
Q ss_pred hhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 174 ~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
...-..-|..+...|+|.+|..+|-.++.
T Consensus 196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 24445578889999999999999988754
No 50
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.78 E-value=0.047 Score=50.08 Aligned_cols=127 Identities=10% Similarity=-0.047 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhhhccchh---HHHhHHHHHHHHHHhcCHH
Q 016653 76 ELKKLDDRIADAEENLGESEVREAHLAKSLFYIQI-GDKEKALEQLKVTESKTVAVGQ---KMDLVFYTLQLGFFYMDFD 151 (385)
Q Consensus 76 ~l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~-Gd~~~A~~~~~~~~~~~~~~~~---~id~~l~~i~~~i~~~~~~ 151 (385)
-+.-++.-++-+....-......++..+|..|... |++++|.++|.+..+.....+. ..+....+..+....|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 34444444444444444455567899999999996 9999999999999877643322 2456677788888899999
Q ss_pred HHHhHHHHHHHHHhcCCChh-hhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 152 LISKSIDKAKSLFEEGGDWE-RKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 152 ~~~~~i~ka~~~~~~~~~~~-~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.+.....++-......+... .....-...|+.++..|++..|...|-.+..
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999998877532211110 0111223367888899999999999988754
No 51
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.75 E-value=0.014 Score=48.69 Aligned_cols=100 Identities=13% Similarity=0.043 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhh
Q 016653 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERK 173 (385)
Q Consensus 94 ~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~ 173 (385)
.+-..+++.+|..+++.|++++|.++|.++....+. ..+...++-.+....|+++.+...+.++-.+-- .++.
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~---~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--~~~~-- 105 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--NDYT-- 105 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--SCCH--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--CCcH--
Confidence 445678999999999999999999999998876432 245666777788888999999999999887621 1222
Q ss_pred hhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 174 ~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.....|..++..|+|.+|...|-.++.
T Consensus 106 --~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 106 --PVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234578889999999999999987754
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.73 E-value=0.25 Score=43.03 Aligned_cols=99 Identities=13% Similarity=0.084 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|...|++++|.+++.++.+.... .......+..+....|+++.+...+.++-. .+.+|. ....
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~~~-~~~~ 143 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSR---NARVLNNYGGFLYEQKRYEEAYQRLLEASQ---DTLYPE-RSRV 143 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---CTTCTT-HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh---CccCcc-cHHH
Confidence 467888999999999999999999888765432 245666677777888999999888887765 111111 1223
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
....|..+...|+|.+|...|-.++.
T Consensus 144 ~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 144 FENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34456677888999999998887754
No 53
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.69 E-value=0.1 Score=45.27 Aligned_cols=100 Identities=9% Similarity=-0.031 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh---hh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER---KN 174 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~---~~ 174 (385)
.+++.+|..|...|++++|.++|.++.+.... ..+.+..+..+....|++..+...+.++-..-. .++.. ..
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~ 117 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYN---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYA 117 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHH
Confidence 46677999999999999999999998865432 456777788888889999999999988876532 12221 12
Q ss_pred hhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 175 RLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 175 ~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
..-...|..+...|+|.+|...|-.++.
T Consensus 118 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 118 IYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 3344578888999999999999988764
No 54
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.002 Score=49.16 Aligned_cols=96 Identities=5% Similarity=-0.132 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
.++..+|..++..|++++|.++|.+........ .....+...+....|+++.+...+.++-..-...+++.......
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 568899999999999999999999988765332 45667777788889999999999988876532222222223333
Q ss_pred HHHHHhccccCCHHHHHHH
Q 016653 178 VYEGLYCMSTRNFKKAASL 196 (385)
Q Consensus 178 ~~~gl~~l~~r~~~~Aa~~ 196 (385)
...|..+...|++..|...
T Consensus 82 ~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHHhHhhhHhH
Confidence 3445555555555444333
No 55
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.62 E-value=0.022 Score=47.15 Aligned_cols=98 Identities=10% Similarity=-0.035 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhh
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~ 175 (385)
...+++.+|..++..|++++|.++|.+..+.... ....+.++..+.+..|++..+...+.++-..-. .+ ..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~----~~ 80 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KY----SK 80 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC----HH
Confidence 3567899999999999999999999998876543 246677778888889999999999998876521 11 22
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.....|..+...++|..|...|-.++.
T Consensus 81 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 81 AWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 334578888999999999999988764
No 56
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.62 E-value=0.025 Score=44.69 Aligned_cols=97 Identities=6% Similarity=-0.090 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..++..|++++|.++|.+....... ..+.......+....|+|..+...+.++-..-. .+ ...
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~ 79 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDG--QS----VKA 79 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hh----HHH
Confidence 456899999999999999999999998876543 246677778888889999999999988876521 11 223
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
....|..+...|+|..|...|-.++.
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34577788899999999999887653
No 57
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=96.55 E-value=0.017 Score=52.91 Aligned_cols=104 Identities=8% Similarity=-0.062 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccch---hHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC-CChhhhh
Q 016653 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG---QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG-GDWERKN 174 (385)
Q Consensus 99 a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~---~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~-~~~~~~~ 174 (385)
.+..+|.+|...|++++|.++|.++.+...... ..+.+..++..+....|+++.+..+..++-...... .++....
T Consensus 117 ~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (293)
T 3u3w_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 355699999999999999999999887543222 234556666777788899999999999999877654 3444444
Q ss_pred hhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 175 RLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 175 ~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.+-.--|..+...|+|.+|..+|-.++.
T Consensus 197 ~~~~nlg~~y~~~~~y~~A~~~~~~al~ 224 (293)
T 3u3w_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4555578888999999999999887754
No 58
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.53 E-value=0.015 Score=45.37 Aligned_cols=98 Identities=12% Similarity=0.066 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhh
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~ 175 (385)
...++..+|..++..|++++|.++|.+..+.... ..+....+..+....|+++.+...+.++-..-. .+ ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~----~~ 85 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK---DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TF----IK 85 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TC----HH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--Cc----hH
Confidence 3577999999999999999999999998765432 245667777777888999999999988876521 11 22
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.....|..+...++|..|...|-.++.
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334567788899999999999987753
No 59
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.50 E-value=0.033 Score=42.10 Aligned_cols=97 Identities=10% Similarity=-0.064 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..+...|++++|.++|.+....... ..+.......+....|+++.+...+.++-.... .+ ...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 74 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DW----GKG 74 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc--cc----HHH
Confidence 356889999999999999999999998766532 245667777788888999999998888766521 11 223
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
....|..+...|+|..|...|-.+..
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34567778889999999999887754
No 60
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.48 E-value=0.036 Score=45.06 Aligned_cols=98 Identities=10% Similarity=-0.063 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhh
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~ 175 (385)
...++..+|..++..|++++|.+.|.+....... ..+.+..+..+....|+|..+...+.++-..-. .++ .
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~----~ 82 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYI----K 82 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----H
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccH----H
Confidence 3566899999999999999999999998876532 256677777788889999999999988877521 111 2
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.....|..+...|+|..|...|-.++.
T Consensus 83 ~~~~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 83 GYYRRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 234467778889999999999987754
No 61
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.46 E-value=0.045 Score=42.06 Aligned_cols=99 Identities=9% Similarity=-0.038 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhh
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 174 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~ 174 (385)
....++..+|..+...|++++|.+.+.+....... .......+..+....|++..+...+.++-..-. .+ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~ 80 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA---NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP--AY----S 80 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----H
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc--cC----H
Confidence 34567899999999999999999999998766432 245677777888889999999999988876521 11 2
Q ss_pred hhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 175 RLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 175 ~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
......|..+...++|..|...|-.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2334567788899999999999988754
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.44 E-value=0.026 Score=51.77 Aligned_cols=95 Identities=6% Similarity=-0.069 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
.++..+|..++..|++++|.+.|.++...... ......+...+....|+|..+...+.++-.. +|. .....
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-----~p~-~~~~~ 75 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQ-SVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTT-CHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCC-CHHHH
Confidence 56889999999999999999999998876532 2456677777888899999999988887654 111 12233
Q ss_pred HHHHHhccccCCHHHHHHHHHhcc
Q 016653 178 VYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 178 ~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
...|..+...|+|.+|...|-.++
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457888899999999999997765
No 63
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.39 E-value=0.021 Score=42.87 Aligned_cols=100 Identities=5% Similarity=-0.042 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
.++..+|..+...|++++|.+++.++.+.... ..+.+.....+....|+++.+...+.++-... ++ .......
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~-~~~~~~~ 79 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVI---ED-EYNKDVW 79 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS---CC-TTCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---cc-cchHHHH
Confidence 34678899999999999999999998876533 23556777778888899999999988876642 11 0112233
Q ss_pred HHHHHhcccc-CCHHHHHHHHHhccccC
Q 016653 178 VYEGLYCMST-RNFKKAASLFLDSISTF 204 (385)
Q Consensus 178 ~~~gl~~l~~-r~~~~Aa~~f~e~~~t~ 204 (385)
...|..+... ++|.+|.+.|-.+....
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 4567788899 99999999998876543
No 64
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.37 E-value=0.03 Score=47.99 Aligned_cols=104 Identities=12% Similarity=0.025 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCC--------
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG-------- 168 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~-------- 168 (385)
..++..+|..|...|++++|.++|.+....... ....+.....+....|+++.+...+.++-.......
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 113 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKH---LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhc
Confidence 357899999999999999999999998766432 346677777888889999999999998877532211
Q ss_pred --ChhhhhhhhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 169 --DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 169 --~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
............|..+...|+|..|...|-.+...
T Consensus 114 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 114 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 00011234455788889999999999999887643
No 65
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.35 E-value=0.044 Score=46.82 Aligned_cols=100 Identities=8% Similarity=-0.067 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccch-------------hHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG-------------QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-------------~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..++..|++++|.++|.++...+.... -....+.++..+.+..|+|..+...+.++-..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45688899999999999999999999887653321 02367777788888899999999999988775
Q ss_pred HhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 164 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 164 ~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
- |. ........|..+...++|..|...|-.++.
T Consensus 118 ~-----p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 118 D-----KN-NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp S-----TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred C-----cc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2 11 123334578888999999999999987753
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.32 E-value=0.28 Score=48.47 Aligned_cols=96 Identities=8% Similarity=-0.142 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHhCCH-HHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhh
Q 016653 97 REAHLAKSLFYIQIGDK-EKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~-~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~ 175 (385)
..+++.+|..|...|++ ++|.++|.++.+.... ..+.+..+-.+....|+++.+...+.++-.. +|. ..
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~--~~ 171 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH-----CKN--KV 171 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-----CCC--HH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCC--HH
Confidence 57799999999999999 9999999998876532 3466777778888889999999999887654 233 23
Q ss_pred hhHHHHHhcccc---------CCHHHHHHHHHhccc
Q 016653 176 LKVYEGLYCMST---------RNFKKAASLFLDSIS 202 (385)
Q Consensus 176 l~~~~gl~~l~~---------r~~~~Aa~~f~e~~~ 202 (385)
....-|..+... ++|.+|...|-.++.
T Consensus 172 ~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 207 (474)
T 4abn_A 172 SLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ 207 (474)
T ss_dssp HHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH
Confidence 344567777788 999999999988764
No 67
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.31 E-value=0.019 Score=55.86 Aligned_cols=122 Identities=16% Similarity=0.052 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc------chhHHHhHHHHHHHHHHhcCHHHH
Q 016653 80 LDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA------VGQKMDLVFYTLQLGFFYMDFDLI 153 (385)
Q Consensus 80 Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~------~~~~id~~l~~i~~~i~~~~~~~~ 153 (385)
++..+....+.+........+..||.+|+..|++++|+++|.+..+.... ....+..+.++-.+....|+++.+
T Consensus 34 ~e~~~~~~~~~~~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A 113 (472)
T 4g1t_A 34 FEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDV 113 (472)
T ss_dssp HHHHHHHHTTSCC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHH
Confidence 34444433333333443456778999999999999999999998765421 112233445566677788999999
Q ss_pred HhHHHHHHHHHhcCCChhh--hhhhhHHHHH--hccccCCHHHHHHHHHhcc
Q 016653 154 SKSIDKAKSLFEEGGDWER--KNRLKVYEGL--YCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 154 ~~~i~ka~~~~~~~~~~~~--~~~l~~~~gl--~~l~~r~~~~Aa~~f~e~~ 201 (385)
..++.++..+.....++.. ...+....|. ..+..++|.+|...|-.++
T Consensus 114 ~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal 165 (472)
T 4g1t_A 114 QIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL 165 (472)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 9999999887544222211 1223333454 4456778999999987764
No 68
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.24 E-value=0.51 Score=40.79 Aligned_cols=104 Identities=12% Similarity=-0.006 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc----hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc-------
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV----GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE------- 166 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~----~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~------- 166 (385)
.++..+|..|...|++++|.+++.++.+..... ......+..+..+....|++..+...+.++-.....
T Consensus 39 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 118 (258)
T 3uq3_A 39 TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKL 118 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHH
Confidence 456777777777777777777777766544321 112456666666666777777777777766653100
Q ss_pred --------------CCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 167 --------------GGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 167 --------------~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
..+|. ........|..++..|+|..|...|-.++.
T Consensus 119 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 167 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIK 167 (258)
T ss_dssp HHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 01221 123334567788899999999999988764
No 69
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.20 E-value=0.052 Score=44.61 Aligned_cols=99 Identities=11% Similarity=-0.039 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhh
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 174 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~ 174 (385)
+-..+++.+|..++..|++++|.+.|.++...... ..+..++.-.+....|+|+.+...+.++-.+-- .++
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~---- 89 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI--XEP---- 89 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCT----
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCc----
Confidence 34567899999999999999999999998765432 245556677778888999999999998876521 122
Q ss_pred hhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 175 RLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 175 ~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
......|..++..|+|.+|...|-.++.
T Consensus 90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 90 RFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2234578889999999999999877653
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=96.17 E-value=0.15 Score=47.81 Aligned_cols=125 Identities=11% Similarity=-0.061 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccch-----hHHHhHHHHHHHHHHhcCHH
Q 016653 77 LKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVG-----QKMDLVFYTLQLGFFYMDFD 151 (385)
Q Consensus 77 l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-----~~id~~l~~i~~~i~~~~~~ 151 (385)
...++.-+.-............++..+|..+...|++++|.+.+.+..+.....+ ........+..+....|+++
T Consensus 73 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 152 (373)
T 1hz4_A 73 LALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLD 152 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHH
Confidence 3444444444444444445566788999999999999999999999887653221 23344455666778889999
Q ss_pred HHHhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 152 LISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 152 ~~~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.+...+.++-......+++. ........|..+...|+|..|...|-.+..
T Consensus 153 ~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~ 202 (373)
T 1hz4_A 153 EAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLEN 202 (373)
T ss_dssp HHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999888765444433 223333466678889999999998877653
No 71
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.17 E-value=0.08 Score=46.36 Aligned_cols=109 Identities=6% Similarity=-0.033 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH------------------hcCHHHHHhHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF------------------YMDFDLISKSID 158 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~------------------~~~~~~~~~~i~ 158 (385)
..+++.+|..|++.|++++|.+.|.++.+...+....-+..+.+-.+... .|++..+...+.
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 120 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFS 120 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHH
Confidence 56889999999999999999999999887665443332333322222221 356666666666
Q ss_pred HHHHHH-hcCCChhhhhh----------hhHHHHHhccccCCHHHHHHHHHhccccCC
Q 016653 159 KAKSLF-EEGGDWERKNR----------LKVYEGLYCMSTRNFKKAASLFLDSISTFT 205 (385)
Q Consensus 159 ka~~~~-~~~~~~~~~~~----------l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~ 205 (385)
++-... +...-|....+ .....|..++..|+|..|...|-.++..+.
T Consensus 121 ~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p 178 (225)
T 2yhc_A 121 KLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP 178 (225)
T ss_dssp HHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc
Confidence 554431 11111111111 113457778889999999988887766553
No 72
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.11 E-value=0.068 Score=41.03 Aligned_cols=96 Identities=15% Similarity=0.081 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
.+++.+|..+...|++++|.+.+.++...... ....+..+..+....|+++.+...+.++...-. .++ ...
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~ 72 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSA----EAW 72 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCH----HHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--Cch----HHH
Confidence 35788999999999999999999988765432 234556667777788999999988888765421 111 122
Q ss_pred HHHHHhccccCCHHHHHHHHHhccc
Q 016653 178 VYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 178 ~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
...|..+...|+|..|...|-.+..
T Consensus 73 ~~l~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 73 YNLGNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3356677888999999988877654
No 73
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.04 E-value=0.077 Score=40.31 Aligned_cols=97 Identities=14% Similarity=0.093 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..+++.+|..+...|++++|.+++.++...... ..+.+..+..+....|+++.+...+.++-.... .++ ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~ 79 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNA----EA 79 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC--ccH----HH
Confidence 466889999999999999999999998765432 245667777888888999999998888765421 111 22
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
....|..+...++|..|...|-.+..
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 23456677889999999999887653
No 74
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.01 E-value=0.11 Score=43.96 Aligned_cols=104 Identities=14% Similarity=0.036 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc------hh---HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV------GQ---KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG 167 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~------~~---~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~ 167 (385)
...+..+|..+++.|+|++|+++|.+..++..+. .+ ....+.+.-.+....|+|+.+....++|-.+++..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4558899999999999999999999998887551 11 12366666667777899999999999998874432
Q ss_pred C--Chhhhhhhh----HHHHHhccccCCHHHHHHHHHhcc
Q 016653 168 G--DWERKNRLK----VYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 168 ~--~~~~~~~l~----~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
+ +|+ ..+.- .-.|..+...|+|.+|...|-.++
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 221 12222 347888899999999999998765
No 75
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.00 E-value=0.47 Score=44.52 Aligned_cols=179 Identities=11% Similarity=0.042 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCC--hh-hhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD--WE-RKN 174 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~--~~-~~~ 174 (385)
.++.-+|..+...|++++|++++.+..+... ....++.....+++.+..|+.+.+.+.+.+....- .| |. ...
T Consensus 101 ~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~---~d~~~~~d~~ 176 (310)
T 3mv2_B 101 YELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI---EDTVSGDNEM 176 (310)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---ccccccchHH
Confidence 3457899999999999999999988755332 13678999999999999999999999998876652 11 22 234
Q ss_pred hhhHHHHHhccccC--CHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHHhhCChhHHHh---hccC-ChHH--HHH-
Q 016653 175 RLKVYEGLYCMSTR--NFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQ---KVVD-APEI--LTV- 245 (385)
Q Consensus 175 ~l~~~~gl~~l~~r--~~~~Aa~~f~e~~~t~~~~e~~~~~~~~~Y~~l~al~s~~R~~lk~---~v~~-~~e~--~~~- 245 (385)
.+....|...+..| ++..|...|=+....|.. . ....+.|. |.+...+-.+... .++. .|++ +.+
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~--~--~~~~lLln--~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~ 250 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQTFPT--W--KTQLGLLN--LHLQQRNIAEAQGIVELLLSDYYSVEQKENA 250 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCS--H--HHHHHHHH--HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCC--c--ccHHHHHH--HHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence 45566777777666 999998888886555431 0 11223333 4444333222211 1111 0110 000
Q ss_pred hcCcch-HHHHHHHHHh-ccHHHHHHHHHHhHHHhhhchhHhHhH
Q 016653 246 IGKIPY-LSEFLNSLYD-CQYKSFFSAFAGLTEQIKLDRYLYPHF 288 (385)
Q Consensus 246 l~~~p~-~~~li~~f~~-~~y~~~~~~L~~~~~~l~~D~~l~~h~ 288 (385)
-...|. +.++|...+. .+ ...+.+.+....-..++|+..+.
T Consensus 251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~ 293 (310)
T 3mv2_B 251 VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQ 293 (310)
T ss_dssp HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHH
Confidence 012344 4477665543 44 55666666666677788877653
No 76
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.99 E-value=0.088 Score=42.42 Aligned_cols=97 Identities=9% Similarity=-0.080 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhh
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~ 175 (385)
-..+++.+|..++..|++++|.+.|.++...... ..+..+.+-.+....|+++.+...+.++-..-. .++.
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~---- 87 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEPR---- 87 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTH----
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcH----
Confidence 3567889999999999999999999998765432 245566777778888999999999998877521 1222
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhcc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
.....|..+...|+|.+|...|-.++
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al 113 (142)
T 2xcb_A 88 FPFHAAECHLQLGDLDGAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23457888899999999999887764
No 77
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.92 E-value=0.081 Score=40.07 Aligned_cols=71 Identities=10% Similarity=-0.057 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCCh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW 170 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~ 170 (385)
..+++.+|..|+..|++++|.++|.++.+.... ..+.++.+-.+....|+++.+...+.++-.+....++.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 467899999999999999999999998876533 23466777778888999999999999988875443443
No 78
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.05 Score=50.36 Aligned_cols=153 Identities=12% Similarity=0.095 Sum_probs=95.9
Q ss_pred HHHHHhccccCCHHHHHHHHHhccccCC-cCcc--CCH--hHHHHHHHHHHHhhCChhHHHhhc--cCChHHHHHhcCcc
Q 016653 178 VYEGLYCMSTRNFKKAASLFLDSISTFT-TYEL--FPY--DTFIFYTVLTSIISLDRVSLKQKV--VDAPEILTVIGKIP 250 (385)
Q Consensus 178 ~~~gl~~l~~r~~~~Aa~~f~e~~~t~~-~~e~--~~~--~~~~~Y~~l~al~s~~R~~lk~~v--~~~~e~~~~l~~~p 250 (385)
...++..+..+|+..--+++-..-+-|. ..+. .++ ..+.-|-.|.-+.+.+.+++...+ +.. ..+-+...|
T Consensus 63 E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~--~~~~~~~d~ 140 (274)
T 4b4t_T 63 EVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDK--HIKNLEDDS 140 (274)
T ss_dssp HHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSC--SSSTTTCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcch--hhHhHhcCh
Confidence 3467888999998765555433322221 1111 122 266677777777777666654321 111 000123455
Q ss_pred hHH---HHHHHHHhccHHHHHHHHHHhHHHhhhchhHhHhHHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHH
Q 016653 251 YLS---EFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFID 327 (385)
Q Consensus 251 ~~~---~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE 327 (385)
.++ ++-+++.+++|..|++.+..... .-+..+-..+.++..+|..++....++|.+|+++.+++.||.+.+
T Consensus 141 ~Ik~al~le~al~eGnY~kff~l~~~~~~---p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~--- 214 (274)
T 4b4t_T 141 LLSYPIKLDRWLMEGSYQKAWDLLQSGSQ---NISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNE--- 214 (274)
T ss_dssp HHHHHHHHHHHHHHTCSHHHHHHHHTCTT---CCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcCCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCH---
Confidence 543 44557788999999987765311 011234456788999999999999999999999999999999642
Q ss_pred HHHHHHHhCCc
Q 016653 328 VELSRFIAAGK 338 (385)
Q Consensus 328 ~~L~~lI~~g~ 338 (385)
+++.+++....
T Consensus 215 ~e~~~F~~~~g 225 (274)
T 4b4t_T 215 KETEKFALERN 225 (274)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHcC
Confidence 35666666544
No 79
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=95.90 E-value=0.66 Score=39.09 Aligned_cols=97 Identities=9% Similarity=0.034 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..+...|++++|.+++.++.+..... .+....+..+....|+++.+...+.++-.... .++ ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~----~~ 78 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKN---ELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DSA----EI 78 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCh----HH
Confidence 4678899999999999999999999887765332 45566667777888999999988888766421 111 12
Q ss_pred hHHHHHhcccc-CCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMST-RNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~-r~~~~Aa~~f~e~~~ 202 (385)
....|..+... |+|..|...|-.+..
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~ 105 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALA 105 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 23456677788 999999999888765
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.89 E-value=0.29 Score=45.81 Aligned_cols=126 Identities=10% Similarity=0.043 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhhCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc--chhHHHhHHHHHHHHHHhcCHHHH
Q 016653 78 KKLDDRIADAEENLGE--SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA--VGQKMDLVFYTLQLGFFYMDFDLI 153 (385)
Q Consensus 78 ~~Le~~l~~~~~n~~~--~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~~id~~l~~i~~~i~~~~~~~~ 153 (385)
+.++.-+.-....... .....++..+|..|+..|++++|.+++.+..+.+.. ............++....|+++.+
T Consensus 114 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 193 (373)
T 1hz4_A 114 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA 193 (373)
T ss_dssp HHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 3344444444333332 345567888999999999999999999998876643 223456677788889999999999
Q ss_pred HhHHHHHHHHHhcCCCh-hhhhhhhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 154 SKSIDKAKSLFEEGGDW-ERKNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 154 ~~~i~ka~~~~~~~~~~-~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
...+.++.......+.+ ..........+..++..|++..|...+-.+...
T Consensus 194 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 244 (373)
T 1hz4_A 194 RSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP 244 (373)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC
Confidence 99999998875443332 111111112334467899999999999887643
No 81
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=95.84 E-value=0.069 Score=46.80 Aligned_cols=105 Identities=15% Similarity=0.103 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
.+++.+|..+++.|++++|.+.|.++...........+..+.+..+....|+|..+.....++-..--. ++.. ....
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~--~~~~-~~a~ 81 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT--HPNI-DYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTTH-HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC--CCcH-HHHH
Confidence 468899999999999999999999998766554455677788888889999999999888887654211 1110 0011
Q ss_pred HHHHHhc------------------cccCCHHHHHHHHHhccccCC
Q 016653 178 VYEGLYC------------------MSTRNFKKAASLFLDSISTFT 205 (385)
Q Consensus 178 ~~~gl~~------------------l~~r~~~~Aa~~f~e~~~t~~ 205 (385)
...|..+ ...+++.+|...|-.++..+.
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 2233322 346789999998888776554
No 82
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=95.81 E-value=0.84 Score=39.59 Aligned_cols=98 Identities=18% Similarity=0.138 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhh
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~ 175 (385)
...++..+|..|...|++++|.++|.++.+.... .......+..+....|++..+...+.++-..-. .+ ..
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~----~~ 106 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDS--RN----AR 106 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--Cc----HH
Confidence 4678999999999999999999999998876432 245667777888889999999999988866521 11 12
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.....|..+...|+|.+|...|-.+..
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 233456677889999999999988765
No 83
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.72 E-value=0.094 Score=49.41 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc------------hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV------------GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~------------~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
...++..+|..|+..|++++|.++|.++....... ......+.++..+.+..|+|..+...+.++-..
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678999999999999999999999988766433 112577788888888999999999999988775
Q ss_pred HhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 164 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 164 ~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
- |. ..+.....|..++..++|..|...|-.++.
T Consensus 226 ~-----p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 226 D-----SN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp C-----TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred C-----CC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 11 122334578888999999999999988754
No 84
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.66 E-value=0.088 Score=51.96 Aligned_cols=101 Identities=14% Similarity=0.018 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc------------hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV------------GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~------------~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
...++..+|..|++.|+|++|.++|.++.+..... ......+.++..+.+..++|..+.....++-.+
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35678899999999999999999999988765432 123567778888888999999999999998775
Q ss_pred HhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 164 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 164 ~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
-. + ..+.....|..++..++|..|...|-.++.
T Consensus 347 ~p---~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 347 DS---A---NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp ST---T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CC---c---cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 21 1 123334578889999999999999988764
No 85
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.66 E-value=0.079 Score=41.20 Aligned_cols=67 Identities=7% Similarity=-0.111 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..+++.+|..|+..|++++|.+.|.++.....+.....+..+.+..+....|+++.+...+.++-..
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3678999999999999999999999998776555445677788888888999999999998887664
No 86
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.63 E-value=0.81 Score=39.20 Aligned_cols=97 Identities=9% Similarity=-0.038 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|...|++++|.+++.++.+.... .......+..+....|+++.+...+.++-.... .++ ..
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~ 127 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSS---AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM--ENG----DL 127 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--CSH----HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCH----HH
Confidence 356777888888888888888888877655322 245556666777777888888887777665421 111 12
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
....|..++..|+|.+|...|-.++.
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~ 153 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVE 153 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 23456667778888888887776653
No 87
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.62 E-value=0.95 Score=38.89 Aligned_cols=98 Identities=7% Similarity=-0.079 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
.+++.+|..++..|++++|.+.|.++.+.....+ .........+....|++..+...+.++-..- |. .....
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~ 79 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQD--SVTAYNCGVCADNIKKYKEAADYFDIAIKKN-----YN-LANAY 79 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CS-HHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCC--cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-----cc-hHHHH
Confidence 5788999999999999999999999887664122 2455557777888899999999998876531 11 12233
Q ss_pred HHHHHhccccCCHHHHHHHHHhcccc
Q 016653 178 VYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 178 ~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
...|..+...|+|.+|...|-.++..
T Consensus 80 ~~l~~~~~~~~~~~~A~~~~~~al~~ 105 (228)
T 4i17_A 80 IGKSAAYRDMKNNQEYIATLTEGIKA 105 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 45777888999999999999887653
No 88
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.62 E-value=0.071 Score=47.24 Aligned_cols=98 Identities=15% Similarity=0.046 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhH
Q 016653 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (385)
Q Consensus 99 a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~ 178 (385)
++..+|..|+..|++++|.+++.++.+....+......+..+..+....|+++.+...+.++-..-.. ++ ....
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~--~~----~~~~ 112 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT--RL----DMYG 112 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CT----HHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cH----HHHH
Confidence 46666777777777777777777666532222333344555666666667777777766666554211 11 1223
Q ss_pred HHHHhccccCCHHHHHHHHHhccc
Q 016653 179 YEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 179 ~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
..|..+...|+|.+|...|-.++.
T Consensus 113 ~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 113 QIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHhh
Confidence 345556667777777777766543
No 89
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=95.54 E-value=0.93 Score=41.14 Aligned_cols=101 Identities=14% Similarity=0.166 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh---hh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER---KN 174 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~---~~ 174 (385)
.++..+|..|...|++++|.+.+.++.+.... ..+....+..+....|++..+...+.++-.... .++.. -.
T Consensus 155 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~ 229 (359)
T 3ieg_A 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSD---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--DHKRCFAHYK 229 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--cchHHHHHHH
Confidence 56788888888899999998888887765432 235666777778888999888888887765421 11111 11
Q ss_pred hh-----hHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 175 RL-----KVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 175 ~l-----~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
.+ ....|..++..|+|.+|...|-.+...
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 263 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11 123466788899999999999887653
No 90
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=95.52 E-value=0.044 Score=49.24 Aligned_cols=120 Identities=15% Similarity=0.212 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhCChhHHHhh--ccCChHHHHHhcCcchH---HHHHHHHHhccHHHHHHHHHHhHHHhhhchhHhHhH
Q 016653 214 TFIFYTVLTSIISLDRVSLKQK--VVDAPEILTVIGKIPYL---SEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHF 288 (385)
Q Consensus 214 ~~~~Y~~l~al~s~~R~~lk~~--v~~~~e~~~~l~~~p~~---~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l~~h~ 288 (385)
+++....+.+|..++-++.-.- ++. +. +...|++ ..+-+.+.+|+|..|.+.+... +=+.+.+
T Consensus 64 ~ii~~iLlk~L~~~p~~DF~~~l~LIp-~~----~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~-------~~l~~~i 131 (226)
T 1rz4_A 64 TVTAQILLKALTNLPHTDFTLCKCMID-QA----HQEERPIRQILYLGDLLETCHFQAFWQALDEN-------MDLLEGI 131 (226)
T ss_dssp HHHHHHHHHHHHTTTSTHHHHHHHTSC-HH----HHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTT-------CHHHHTS
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhCC-hh----hhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC-------hhHHHHH
Confidence 4444444556655554443221 111 11 1234544 4556678899999999877542 2233445
Q ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHhC-CChHHHHHHHHHHHhCCccceEEecCCCEEEE
Q 016653 289 RYYMREVRTVVYSQFLESYKSVTIEAMAKAFG-VTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 352 (385)
Q Consensus 289 ~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg-~s~~~iE~~L~~lI~~g~l~akID~~~giv~~ 352 (385)
..|.+.+|..+..-.-..|++|+++.+++.+| ++.+++++++.+. .=++| .+|.|..
T Consensus 132 ~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~------GW~vd-~~g~I~~ 189 (226)
T 1rz4_A 132 TGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY------GWSAD-ESGQIFI 189 (226)
T ss_dssp TTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHH------TCEEC-C--CEEC
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHC------CCEEC-CCccEEe
Confidence 56888999998888888999999999999995 8998888888772 22565 4555544
No 91
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.51 E-value=0.1 Score=43.31 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHH-HHHhcCH--HHHHhHHHHHHHHHhcCCChhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQL-GFFYMDF--DLISKSIDKAKSLFEEGGDWERK 173 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~-~i~~~~~--~~~~~~i~ka~~~~~~~~~~~~~ 173 (385)
..++..+|..|...|++++|.++|.++....... .+.......+ ....|++ +.+...+.++-..-. .++
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p--~~~--- 115 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQHMTAQTRAMIDKALALDS--NEI--- 115 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT--TCH---
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC--CcH---
Confidence 3578999999999999999999999988765432 3455555556 5567888 999888888766521 111
Q ss_pred hhhhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 174 ~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
......|..+...|+|..|...|-.++..
T Consensus 116 -~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 116 -TALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 22345677888999999999999887643
No 92
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.50 E-value=0.1 Score=50.14 Aligned_cols=100 Identities=9% Similarity=-0.026 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc-------------chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVA-------------VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-------------~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..+++.|++++|.++|.++.+.+.. .......+.++..+.+..++|+.+..+..++-..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 456889999999999999999999998875422 2334567778888888899999999999887764
Q ss_pred HhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 164 FEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 164 ~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
+|. ..+.....|..+...++|.+|...|-.++.
T Consensus 303 -----~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 303 -----DPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -----CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----Cch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 221 123334578888899999999999988753
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.46 E-value=0.16 Score=38.83 Aligned_cols=96 Identities=15% Similarity=0.079 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..+...|++++|.+.+.++...... ..........+....|++..+...+.++-.... .++ ..
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~ 105 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSA----EA 105 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCH----HH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC---chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCh----HH
Confidence 356788999999999999999999998765432 234556677778888999999988887766421 111 12
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
....|..+...|++..|...|-.+.
T Consensus 106 ~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 106 WYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHH
Confidence 2335666778999999999887764
No 94
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.39 E-value=0.13 Score=46.52 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|...|++++|.+++.++.+..... ......+..+....|+++.+...+.++-.... .++ ..
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~----~~ 195 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGC---HLPMLYIGLEYGLTNNSKLAERFFSQALSIAP--EDP----FV 195 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT--TCH----HH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC--CCh----HH
Confidence 4568888888888888888888888877655332 23344466667777888888888877765421 122 12
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
....|..+...|+|.+|...|-.++
T Consensus 196 ~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 196 MHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3455666777888888888776664
No 95
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.39 E-value=0.15 Score=41.60 Aligned_cols=95 Identities=13% Similarity=0.106 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
.++..+|..+...|++++|.+++.++.+.... ..........+....|+++.+...+.++-.... .+ ....
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~ 113 (186)
T 3as5_A 43 DVALHLGIAYVKTGAVDRGTELLERSLADAPD---NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP--IN----FNVR 113 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TC----HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc--Hh----HHHH
Confidence 45667777777777777777777776654322 234455556666666777777777666655411 11 1122
Q ss_pred HHHHHhccccCCHHHHHHHHHhcc
Q 016653 178 VYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 178 ~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
...|..+...|+|..|...|-.++
T Consensus 114 ~~~a~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 114 FRLGVALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHH
Confidence 334555666777777777766654
No 96
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=95.36 E-value=0.32 Score=47.60 Aligned_cols=96 Identities=11% Similarity=0.029 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|...|++++|.+.|.++....... .+....+..+....|+++.+...+.++-.... .++ ..
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~ 380 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKFP--TLP----EV 380 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCT----HH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCh----HH
Confidence 4678999999999999999999999988765332 25567777788888999999999988876521 122 23
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
....|..+...|+|..|...|-.++
T Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 381 PTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455888889999999999887765
No 97
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.31 E-value=0.14 Score=41.41 Aligned_cols=97 Identities=11% Similarity=0.002 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..+...|++++|.+++.+....... ..+.+..+..+....|+++.+...+.++-..-. .++.. ..
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~--~~ 119 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDA--KM 119 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHH--HH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHH--HH
Confidence 467889999999999999999999998876532 245667777788888999999999988876521 12221 11
Q ss_pred hHHHHHhccccCCHHHHHHHHHhc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDS 200 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~ 200 (385)
....+...+..++|.+|...+-..
T Consensus 120 ~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 120 KYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccch
Confidence 122333456688898888877554
No 98
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=95.20 E-value=1.7 Score=40.16 Aligned_cols=104 Identities=8% Similarity=-0.077 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH-hcCCChhhh--
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF-EEGGDWERK-- 173 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~-~~~~~~~~~-- 173 (385)
..++..+|..|...|++++|.++|.++.+.... ..+.+..+..+....|+++.+...+.++-..- +....+...
T Consensus 99 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 175 (365)
T 4eqf_A 99 AEAWQFLGITQAENENEQAAIVALQRCLELQPN---NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKG 175 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhcc
Confidence 567999999999999999999999998876532 24567777888888999999999999887752 111111100
Q ss_pred -hhhhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 174 -NRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 174 -~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
..+....|..+...|+|.+|...|-.++..
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 111122366778889999999998887643
No 99
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.18 E-value=1.9 Score=39.56 Aligned_cols=62 Identities=6% Similarity=-0.222 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~ 162 (385)
.++..+|..|...|++++|.++|.++.+.... ..+....+..+....|++..+...+.++-.
T Consensus 99 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 99 EAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666677777777777777777666554322 234455555555666666666666655543
No 100
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.15 E-value=0.21 Score=40.68 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..+...|++++|.+++.++...... .......+..+....|+++.+...+.++-.... .+ ...
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~ 146 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPI---NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP--NE----GKV 146 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH---hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc--cc----hHH
Confidence 467889999999999999999999998876533 235667777888889999999999888766521 11 122
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
....|..+...|+|..|...|-.+.
T Consensus 147 ~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 147 HRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3446667788999999999887664
No 101
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.01 E-value=0.41 Score=42.05 Aligned_cols=99 Identities=14% Similarity=0.036 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhh
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 174 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~ 174 (385)
....++..+|..|...|++++|.++|.++.+.... ..+.+..+..+....|+++.+...+.++-..-. .+ .
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~----~ 111 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--TY----N 111 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----T
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCc--cc----c
Confidence 44677888999999999999999999888765432 235566677777788999999888888776521 11 1
Q ss_pred hhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 175 RLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 175 ~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
......|..++..|+|.+|...|-.++.
T Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 139 (275)
T 1xnf_A 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQ 139 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 2223456677788899999888877654
No 102
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=94.97 E-value=0.17 Score=39.78 Aligned_cols=93 Identities=10% Similarity=-0.022 Sum_probs=69.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhHH
Q 016653 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 179 (385)
Q Consensus 100 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~~ 179 (385)
++.+|..+.+.|++++|.+.|.++...... ..+..+.+-.+....|++..+...+.++-.+-- .++ .....
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~----~~~~~ 90 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDI----AVHAA 90 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHH
Confidence 678899999999999999999988765432 245566677777788999999998888766521 111 12345
Q ss_pred HHHhccccCCHHHHHHHHHhcc
Q 016653 180 EGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 180 ~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
.|..+...|+|.+|...|-.++
T Consensus 91 la~~~~~~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6777888999999998887764
No 103
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.94 E-value=1.1 Score=40.12 Aligned_cols=98 Identities=18% Similarity=0.096 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhC-CHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhh
Q 016653 97 REAHLAKSLFYIQIG-DKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (385)
Q Consensus 97 r~a~~~la~~~~~~G-d~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~ 175 (385)
..++..+|..+...| ++++|.+++.++...... ..+....+..+....|++..+...+.++-..... + ..
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~----~~ 160 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT---YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG--C----HL 160 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT---CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT--C----SH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc--c----HH
Confidence 467899999999999 999999999998866533 2345677778888899999999999988776321 1 12
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
....-|..+...|+|.+|...|-.++..
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 2344677888999999999999887654
No 104
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.86 E-value=0.19 Score=38.88 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 94 ~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..-..++..+|..|...|++++|.++|.++.+..... .+....+..+....|++..+...+.++-..
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4456789999999999999999999999988765432 456667777778889999999988887665
No 105
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.83 E-value=1.5 Score=36.73 Aligned_cols=99 Identities=14% Similarity=0.013 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHh-cCHHHHHhHHHHHHHHHhcCCChhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-MDFDLISKSIDKAKSLFEEGGDWERKNR 175 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~-~~~~~~~~~i~ka~~~~~~~~~~~~~~~ 175 (385)
..++..+|..|...|++++|.+++.++.+.... ..+.......+.... |+++.+...+.++-. ...+|. ...
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~-~~~ 114 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD---SAEINNNYGWFLCGRLNRPAESMAYFDKALA---DPTYPT-PYI 114 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT---STTCSC-HHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc---CcCCcc-hHH
Confidence 346788899999999999999999888765432 234566677777888 899988888887766 111221 122
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.....|..+...|+|..|...|-.++.
T Consensus 115 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 115 ANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334466777888999999888877654
No 106
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=94.82 E-value=0.27 Score=42.72 Aligned_cols=94 Identities=19% Similarity=0.116 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|...|++++|.++|.+..+.. .-.+..+....+....|+++.+...+.++-..- ..++ ..
T Consensus 118 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~----~~ 187 (217)
T 2pl2_A 118 APLHLQRGLVYALLGERDKAEASLKQALALE----DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDL----DL 187 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCH----HH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCh----HH
Confidence 4678999999999999999999999987654 234566777888888999999999998876641 1122 22
Q ss_pred hHHHHHhccccCCHHHHHHHHHhc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDS 200 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~ 200 (385)
...-|..+...|+|.+|...|-.+
T Consensus 188 ~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 188 RVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTC--------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHH
Confidence 234577788999999998877654
No 107
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.80 E-value=0.18 Score=43.55 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|...|++++|.+.+.++.+..... .+.......+....|+++.+...+.++-.... .++ ..
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~ 161 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNE--NDT----EA 161 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT--TCH----HH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--ccH----HH
Confidence 4678999999999999999999999988765432 34567777888889999999999988776521 122 23
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
....|..++..|+|..|...|-.+..
T Consensus 162 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 187 (243)
T 2q7f_A 162 RFQFGMCLANEGMLDEALSQFAAVTE 187 (243)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34567778889999999999887754
No 108
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.78 E-value=0.37 Score=48.26 Aligned_cols=119 Identities=12% Similarity=-0.016 Sum_probs=84.1
Q ss_pred HHHHHHHHHhhCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh---hccchh--HHHhHHHHHHHHHHhcCHHHH
Q 016653 81 DDRIADAEENLGE--SEVREAHLAKSLFYIQIGDKEKALEQLKVTESK---TVAVGQ--KMDLVFYTLQLGFFYMDFDLI 153 (385)
Q Consensus 81 e~~l~~~~~n~~~--~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~---~~~~~~--~id~~l~~i~~~i~~~~~~~~ 153 (385)
+.-|...+.-++. .++...+..||..|...|+|++|..++.++.+- .-++.| ....+.++..+....|+++.|
T Consensus 333 ~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA 412 (490)
T 3n71_A 333 RECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVG 412 (490)
T ss_dssp HHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHH
Confidence 3344444444554 457778999999999999999999999987543 223333 556677777788888999999
Q ss_pred HhHHHHHHHHHhc--CCC-hhhhhhhhHHHHHhccccCCHHHHHHHHHhc
Q 016653 154 SKSIDKAKSLFEE--GGD-WERKNRLKVYEGLYCMSTRNFKKAASLFLDS 200 (385)
Q Consensus 154 ~~~i~ka~~~~~~--~~~-~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~ 200 (385)
...+.+|-.+.+. |.+ |. ...+....+-..+..|.|+.|-..|..+
T Consensus 413 ~~~~~~Al~i~~~~lG~~Hp~-~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 413 HGMICKAYAILLVTHGPSHPI-TKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHHHHTCTTSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998765 322 33 2334444555666778888887777654
No 109
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=94.77 E-value=0.32 Score=45.03 Aligned_cols=121 Identities=9% Similarity=-0.008 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
.+....+|..+.+.|+|++|.+.|...... .+++. ..+..--+++..++|..+...+.++-. ..++...+..
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~--~~~~~a~l~~~~~r~~dA~~~l~~a~~----~~d~~~~~~a 173 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHL--VAWMKAVVYGAAERWTDVIDQVKSAGK----WPDKFLAGAA 173 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHH--HHHHHHHHHHHTTCHHHHHHHHTTGGG----CSCHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchH--HHHHHHHHHHHcCCHHHHHHHHHHhhc----cCCcccHHHH
Confidence 455777899999999999999999876542 24444 556666688899999999988874322 1244445667
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHHhhC
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISL 227 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~~~~Y~~l~al~s~ 227 (385)
.++-|..+-..|+|.+|...|-.+..... +-....+...+.++|-.-..
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~--~P~~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPA--GEACARAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTT--TTTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCC--CccccHHHHHHHHHHHHHcC
Confidence 88899999999999999999988753210 01114466667666554443
No 110
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.75 E-value=0.44 Score=39.50 Aligned_cols=97 Identities=20% Similarity=0.125 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|.+.|++++|.+.+.+........ .........+....+++..+.....++..... .++ ..
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~--~~~----~~ 109 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---AEAYYILGSANFMIDEKQAAIDALQRAIALNT--VYA----DA 109 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cch----HH
Confidence 4679999999999999999999999887655432 34445556667778999999988888776521 122 22
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
....|..+...|+|.+|...|-.++.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~~l~ 135 (184)
T 3vtx_A 110 YYKLGLVYDSMGEHDKAIEAYEKTIS 135 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 34567888899999999999877653
No 111
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.72 E-value=0.85 Score=43.37 Aligned_cols=185 Identities=12% Similarity=0.097 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh-
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL- 176 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l- 176 (385)
.++..+|..|...|++++|.+.|.++.+.... ..+....+..+....|+++.+...+.++-..-. .++.....+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~~~ 252 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLKND---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ--DHKRCFAHYK 252 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ChHHHHHHHH
Confidence 45667777777777777777777776654322 235556666677777888888877777654311 111111111
Q ss_pred -------hHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhH-HHHHHHHHHHhhCChhHHHhhccCChHHHHHhcC
Q 016653 177 -------KVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDT-FIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGK 248 (385)
Q Consensus 177 -------~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~-~~~Y~~l~al~s~~R~~lk~~v~~~~e~~~~l~~ 248 (385)
....|..+...|+|.+|...|-.+...... .+.. .-.|..++.+.... .+... -+ ..+.+.++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~~~~~l~~~~~~~-g~~~~-A~--~~~~~a~~~ 324 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS----IAEYTVRSKERICHCFSKD-EKPVE-AI--RVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS----SHHHHHHHHHHHHHHHHTT-TCHHH-HH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHHHHHHC-CCHHH-HH--HHHHHHHHh
Confidence 011266778889999999988877543211 1111 22333343333321 11100 00 012222222
Q ss_pred cc---h-HHHHHHHHH-hccHHHHHHHHHHhHHHhhhchhHhHhHHHHHHHH
Q 016653 249 IP---Y-LSEFLNSLY-DCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREV 295 (385)
Q Consensus 249 ~p---~-~~~li~~f~-~~~y~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~i 295 (385)
.| . +..+..++. ..+|......+......-..++-...+...+....
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 376 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL 376 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence 23 2 345555553 46788777777666444344444444444333333
No 112
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.70 E-value=0.32 Score=46.43 Aligned_cols=104 Identities=13% Similarity=-0.000 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHH---------hHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMD---------LVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG 167 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id---------~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~ 167 (385)
..++..+|..|...|++++|.+.|.++............ ..+....+....|++..+...+.++-... .
T Consensus 211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p 288 (450)
T 2y4t_A 211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--P 288 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C
Confidence 466889999999999999999999998766543332222 22444677788899999999998877642 1
Q ss_pred CChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 168 GDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 168 ~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.++.....+....|..+...|+|.+|...|-.++.
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23433344555677888899999999999887754
No 113
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.69 E-value=0.31 Score=37.26 Aligned_cols=66 Identities=8% Similarity=-0.150 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~ 165 (385)
..+++.+|..|...|++++|.++|.++...... ..+.+..+..+....|+++.+...+.++-....
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT---YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 467899999999999999999999998865432 245566777788888999999999998887643
No 114
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.64 E-value=2.6 Score=38.43 Aligned_cols=93 Identities=16% Similarity=0.183 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..+++.+|..|...|++++|+++|.+ ....+......++....|+++.+...+.++...- ++. ...
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~-~~~-- 166 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ--------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD---EDA-TLT-- 166 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT--------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTC-HHH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---cCc-HHH--
Confidence 35689999999999999999999976 2345677888888889999999999998876651 221 111
Q ss_pred hHHHHHhc--cccCCHHHHHHHHHhcccc
Q 016653 177 KVYEGLYC--MSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 177 ~~~~gl~~--l~~r~~~~Aa~~f~e~~~t 203 (385)
....|... ...++|.+|...|-++...
T Consensus 167 ~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 167 QLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 22233222 3568899999999887654
No 115
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=94.63 E-value=0.037 Score=41.04 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=38.5
Q ss_pred HHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCcc
Q 016653 298 VVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 339 (385)
Q Consensus 298 ~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l 339 (385)
..+.++++....|+++.||+.||+|++-+.+.|..|...|.|
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 346778888999999999999999999999999999999977
No 116
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.62 E-value=0.31 Score=48.56 Aligned_cols=97 Identities=11% Similarity=0.085 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|.+.|++++|.+.|.++.+.... .......+..+....|+++.+...+.++...- ..++. .
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~----~ 477 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG---THLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYDPL----L 477 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT---CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCCHH----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH----H
Confidence 457889999999999999999999988765432 23455666777778899999999888876642 12222 2
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
-...|..+...|+|.+|...|-.+..
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 503 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALL 503 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556677788999999988877754
No 117
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=94.60 E-value=0.3 Score=47.33 Aligned_cols=96 Identities=10% Similarity=-0.082 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhh
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~ 175 (385)
-..++..+|..+++.|++++|.++|.++.....+ ......+..+.+..|+++.+...+.++-..- ++. ..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~---~~ 74 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKED----PVFYSNLSACYVSVGDLKKVVEMSTKALELK---PDY---SK 74 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---SCC---HH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccC---hHH---HH
Confidence 3567999999999999999999999999876532 5677778888899999999999998877641 111 12
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhcc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
.-...|..+...|+|.+|...|-.+.
T Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 100 (514)
T 2gw1_A 75 VLLRRASANEGLGKFADAMFDLSVLS 100 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23346778889999999999887664
No 118
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=94.54 E-value=0.27 Score=35.33 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..+...|++++|.++|.+..+.... .....+.+..+....|+++.+...+.++-..
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 467889999999999999999999998876532 2355667777788889999999888887664
No 119
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.51 E-value=0.33 Score=46.27 Aligned_cols=104 Identities=13% Similarity=0.138 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchh-HH-HhHHHHHH-HHHHhcCHHHHHhHHHHHHHHHhcCCChhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ-KM-DLVFYTLQ-LGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 174 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-~i-d~~l~~i~-~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~ 174 (385)
.++..+|..|.+.|++++|.+.|.+++......+. .. .+....+. +.-..|+++.+.....++-......++...+.
T Consensus 56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 34677888888888888888888877765533222 11 12222221 11123667777777766666544433333344
Q ss_pred hhhHHHHHhccccCCHHHHHHHHHhcc
Q 016653 175 RLKVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 175 ~l~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
++...-|..+...|+|..|...+-++.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 555556667777888888877776654
No 120
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.44 E-value=0.27 Score=44.38 Aligned_cols=96 Identities=10% Similarity=-0.022 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|...|++++|.+++.++.+.... ..+.......+....|+++.+...+.++-..-. .++...
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~--- 243 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPD---DAQLWNKLGATLANGNRPQEALDAYNRALDINP--GYVRVM--- 243 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHH---
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHH---
Confidence 467899999999999999999999998876532 245667777788889999999999988766521 122221
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
..-|..+...|+|..|...|-.+.
T Consensus 244 -~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 244 -YNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhccHHHHHHHHHHHH
Confidence 345777788999999999987765
No 121
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.35 E-value=0.48 Score=40.79 Aligned_cols=61 Identities=15% Similarity=0.000 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 100 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
...+|..|...|++++|.++|.++.+.... ..+....+-.+....|+++.+...+.++-.+
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQKAPN---NVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 455888888889999988888887765432 2456667777777888888888888877664
No 122
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=94.29 E-value=0.046 Score=41.37 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=39.1
Q ss_pred HHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccce
Q 016653 299 VYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 299 ~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a 341 (385)
.+.++++....|+++.||+.||+|++-|.+.|..|...|.|.=
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R 48 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVR 48 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 4677788899999999999999999999999999999998854
No 123
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.25 E-value=0.2 Score=42.67 Aligned_cols=94 Identities=9% Similarity=0.055 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
..++.+|..++..|++++|.+.|.++.+. ....+..+..+....|++..+...+.++-..-. .+ ....
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~----~~~~ 74 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HL----AVAY 74 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cc----hHHH
Confidence 34789999999999999999999887422 235677777788889999999999988776521 11 1223
Q ss_pred HHHHHhccccCCHHHHHHHHHhcccc
Q 016653 178 VYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 178 ~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
...|..+...|+|..|...|-.++..
T Consensus 75 ~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 75 FQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 34677888999999999999877643
No 124
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.24 E-value=1 Score=41.25 Aligned_cols=99 Identities=9% Similarity=0.017 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchh-HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ-KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~-~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~ 175 (385)
..++..+|..|.+.|++++|.+.|.++.+... +. ...+...++.+....|++..+...+.++-... ..++ .
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~----~ 201 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDE--DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTL----L 201 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCH----H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcH----H
Confidence 35788999999999999999999999876642 22 22333344454445578888888887766541 1222 2
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
+....|..++..|+|.+|...|-.++..
T Consensus 202 ~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 202 LLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3344677889999999999999987643
No 125
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=94.20 E-value=0.48 Score=37.38 Aligned_cols=78 Identities=10% Similarity=-0.105 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc----hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV----GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 172 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~----~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~ 172 (385)
..++..+|..|...|++++|++.+.+..+..... ......+..+-.+....|++..+.....++-.. ..+|+.
T Consensus 42 ~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~~~~~~ 118 (127)
T 4gcn_A 42 ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE---FRDPEL 118 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCCHHH
T ss_pred HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CcCHHH
Confidence 4678999999999999999999999987654322 223345555666667789999999988886442 346665
Q ss_pred hhhhh
Q 016653 173 KNRLK 177 (385)
Q Consensus 173 ~~~l~ 177 (385)
..+|+
T Consensus 119 ~~~l~ 123 (127)
T 4gcn_A 119 VKKVK 123 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 126
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.15 E-value=0.71 Score=41.47 Aligned_cols=92 Identities=12% Similarity=0.045 Sum_probs=66.3
Q ss_pred HH-HH-HHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhHH
Q 016653 102 AK-SL-FYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVY 179 (385)
Q Consensus 102 ~l-a~-~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~~ 179 (385)
.+ +. .+...|++++|.+++.++.+.... .......+..+....|+++.+...+.++-.... .++ .....
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~~ 211 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMNPN---DAQLHASLGVLYNLSNNYDSAAANLRRAVELRP--DDA----QLWNK 211 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CcH----HHHHH
Confidence 45 33 488999999999999998876543 345667777788889999999999998776521 111 22344
Q ss_pred HHHhccccCCHHHHHHHHHhccc
Q 016653 180 EGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 180 ~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.|..+...|+|.+|...|-.++.
T Consensus 212 l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 212 LGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66777889999999999877654
No 127
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.14 E-value=0.15 Score=48.16 Aligned_cols=100 Identities=8% Similarity=-0.096 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchh--------------HHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ--------------KMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~--------------~id~~l~~i~~~i~~~~~~~~~~~i~ka~~ 162 (385)
..++..+|..+++.|+|++|.++|.++......... ....++++..+.+..|+|..+...+.++-.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355788999999999999999999998766532110 113666777778888999999999988776
Q ss_pred HHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 163 LFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 163 ~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.- |. ..+.....|..++..++|..|...|-.++.
T Consensus 259 ~~-----p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 259 EE-----EK-NPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HC-----TT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred hC-----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 11 123334578889999999999999988764
No 128
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.11 E-value=0.25 Score=37.71 Aligned_cols=67 Identities=10% Similarity=-0.076 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc-hh---HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV-GQ---KMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~-~~---~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..|...|++++|.+++.++....... .. ....+..+..+....|++..+...+.++-..
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3678899999999999999999999988765322 11 2567777788888899999999999887764
No 129
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.07 E-value=0.28 Score=45.62 Aligned_cols=95 Identities=13% Similarity=0.119 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
.++..+|..|...|++++|.++|.++.+..... ...+..+..+....|++..+...+.++-..-. .+ ....
T Consensus 214 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~ 284 (365)
T 4eqf_A 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANGDRSEEAVEAYTRALEIQP--GF----IRSR 284 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--Cc----hHHH
Confidence 457778888888888888888888777654322 34556666677777888888877777665411 11 1222
Q ss_pred HHHHHhccccCCHHHHHHHHHhcc
Q 016653 178 VYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 178 ~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
..-|..+...|+|.+|...|-.++
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al 308 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTAL 308 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345666777788888888777664
No 130
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=93.83 E-value=0.18 Score=37.50 Aligned_cols=65 Identities=11% Similarity=-0.095 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHh-cCHHHHHhHHHHHHHH
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-MDFDLISKSIDKAKSL 163 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~-~~~~~~~~~i~ka~~~ 163 (385)
.++..+|..|...|++++|.+++.+..+.... ....+....+..+.... |+++.+...+.++-..
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 46788999999999999999999998876543 11356677788888889 9999998888876543
No 131
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.79 E-value=0.31 Score=45.01 Aligned_cols=96 Identities=15% Similarity=0.111 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|...|++++|.++|.++...... .......+..+....|++..+...+.++-..-. .+ ...
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~----~~~ 287 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN---DYLLWNKLGATLANGNQSEEAVAAYRRALELQP--GY----IRS 287 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc----HHH
Confidence 467899999999999999999999998876432 245667778888889999999999998876521 12 233
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
...-|..+...|+|.+|...|-.++
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4667888889999999999987765
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=93.76 E-value=1 Score=35.41 Aligned_cols=64 Identities=5% Similarity=-0.031 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..|...|++++|.+.+.++.+.... ..+.+..+-.+....|+++.+...+.++-.+
T Consensus 47 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSK---FIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 467999999999999999999999998875432 3456777788888899999999999988765
No 133
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.75 E-value=0.34 Score=37.08 Aligned_cols=65 Identities=11% Similarity=-0.078 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc----chhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVA----VGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 99 a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~----~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..+.+|.++++.|+|..|...|..+...... .....++...+..+....|++..+.....++-..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3578999999999999999999998765422 1245677777788888889999999988887654
No 134
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.69 E-value=0.14 Score=39.63 Aligned_cols=88 Identities=9% Similarity=0.094 Sum_probs=64.0
Q ss_pred HhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccC
Q 016653 109 QIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTR 188 (385)
Q Consensus 109 ~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r 188 (385)
..|++++|.++|.++.+...+........+++..+....|+++.+...+.++-..-- .+ .......|..+...|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~----~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NH----QALRVFYAMVLYNLG 75 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TC----HHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Cc----hHHHHHHHHHHHHcC
Confidence 468999999999998876322345567788888888999999999999998876521 12 233455788889999
Q ss_pred CHHHHHHHHHhccc
Q 016653 189 NFKKAASLFLDSIS 202 (385)
Q Consensus 189 ~~~~Aa~~f~e~~~ 202 (385)
+|.+|...|-.++.
T Consensus 76 ~~~~A~~~~~~al~ 89 (117)
T 3k9i_A 76 RYEQGVELLLKIIA 89 (117)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 135
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=93.68 E-value=0.35 Score=42.00 Aligned_cols=97 Identities=14% Similarity=0.021 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHh-----------cCHHHHHhHHHHHHHHHh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-----------MDFDLISKSIDKAKSLFE 165 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~-----------~~~~~~~~~i~ka~~~~~ 165 (385)
..++..+|..+.+.|++++|.+.|.++.+.... ..+.....-.+.... |++..+...+.++-..--
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P 115 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVARTPR---YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP 115 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc
Confidence 467888999999999999999999888765432 234455555566666 888888888877766411
Q ss_pred cCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 166 EGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 166 ~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.++ ......|..+...|+|.+|...|-.++.
T Consensus 116 --~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 116 --RYA----PLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp --TCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --ccH----HHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 111 2224467788889999999988887754
No 136
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=93.37 E-value=0.48 Score=36.65 Aligned_cols=65 Identities=6% Similarity=-0.013 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~ 164 (385)
..++..+|..|...|++++|.+.+.++...... .....+....+....|+++.+...+.++-..-
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 38 ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN---FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 367899999999999999999999998876432 24567777778888999999999999888763
No 137
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=93.11 E-value=0.47 Score=47.61 Aligned_cols=97 Identities=7% Similarity=-0.062 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|...|++++|.++|.+..+.... ..+....+..+....|+++.+...+.++-..-. .++ ..
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~----~~ 127 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEP----YI 127 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HH
Confidence 456788888888888888888888887765432 245566666777777888888888777765421 111 12
Q ss_pred hHHHHHhcccc---CCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMST---RNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~---r~~~~Aa~~f~e~~~ 202 (385)
...-|..+... +++.+|...|-.++.
T Consensus 128 ~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 128 TAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 22345555566 888888888777654
No 138
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=93.08 E-value=0.39 Score=50.46 Aligned_cols=94 Identities=13% Similarity=-0.062 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
.++..||..|.+.|++++|.++|.++.+... ...+.+.++-.+....|+++.+.....+|-++-- .++ ..-
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P---~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P--~~~----~a~ 114 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIRISP---TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP--AFA----DAH 114 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHH
Confidence 4455555555555555555555555444321 1233444444444455555555555554443210 011 111
Q ss_pred HHHHHhccccCCHHHHHHHHHhc
Q 016653 178 VYEGLYCMSTRNFKKAASLFLDS 200 (385)
Q Consensus 178 ~~~gl~~l~~r~~~~Aa~~f~e~ 200 (385)
..-|..+...|+|.+|...|-.+
T Consensus 115 ~~Lg~~~~~~g~~~eAi~~~~~A 137 (723)
T 4gyw_A 115 SNLASIHKDSGNIPEAIASYRTA 137 (723)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 22344445555555555555444
No 139
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=93.02 E-value=0.12 Score=38.11 Aligned_cols=45 Identities=16% Similarity=0.218 Sum_probs=38.2
Q ss_pred HHHHHHHhcccc------ccccHHHHHHHhCCChHHHHHHHHHHHhCCccc
Q 016653 296 RTVVYSQFLESY------KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 340 (385)
Q Consensus 296 R~~~~~qy~~pY------~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ 340 (385)
|.+.+.+|++.+ -.++...||+.||+|+.-+.+.|..|-..|.|.
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~ 55 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLE 55 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 344566666666 779999999999999999999999999999883
No 140
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.97 E-value=0.76 Score=35.95 Aligned_cols=65 Identities=14% Similarity=0.069 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
...++..+|..|...|++++|.+++.+....... ..+.++....+....|++..+...+.++-..
T Consensus 64 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG---DVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3577899999999999999999999998766432 2566777778888899999999999888765
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=92.91 E-value=0.65 Score=35.16 Aligned_cols=64 Identities=11% Similarity=-0.115 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..+...|++++|.+++.+........ ....+....+....|+++.+...+.++-..
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY---SKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 4578899999999999999999999988764332 456677777888899999999999887765
No 142
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=92.86 E-value=5.1 Score=35.99 Aligned_cols=103 Identities=11% Similarity=0.065 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc-CCChhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWERKNR 175 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~-~~~~~~~~~ 175 (385)
..++..+|..|...|++++|.+.+.++.+.... ..+.......+....|++..+...+.++-..-.. +.++.....
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 113 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQ 113 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHH
Confidence 357788888888888888888888887765432 2256667777777788888888877776543110 001111110
Q ss_pred --------hhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 176 --------LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 176 --------l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.....|..+...|+|..|...|-.+..
T Consensus 114 l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 148 (359)
T 3ieg_A 114 LVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 111236677788888888888877654
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=92.76 E-value=0.58 Score=38.24 Aligned_cols=65 Identities=14% Similarity=-0.002 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~ 164 (385)
..++..+|..|+..|++++|.++|.++.+.... ....++.+-.+....|++..+...+.++-..-
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVDPK---YSKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 467899999999999999999999998876532 25667777788888999999999999988764
No 144
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=92.75 E-value=0.88 Score=39.04 Aligned_cols=96 Identities=9% Similarity=0.029 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHH----------------HHHHHHHhcCHHHHHhHHHHHH
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFY----------------TLQLGFFYMDFDLISKSIDKAK 161 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~----------------~i~~~i~~~~~~~~~~~i~ka~ 161 (385)
+.++..|..+.+.|++++|.++|.++...... ..+.... +-.+....|+++.+...+.++-
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID---RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH---HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45778899999999999999999998765432 1233333 6667778899999999998876
Q ss_pred HHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 162 SLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
..-- .++ ......|..++..|+|.+|...|-.++.
T Consensus 82 ~~~p--~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 82 QKAP--NNV----DCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHCT--TCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHCC--CCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6521 121 2223467788899999999999988764
No 145
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=92.70 E-value=0.37 Score=47.16 Aligned_cols=94 Identities=10% Similarity=-0.041 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhh
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 174 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~ 174 (385)
+...++..+|..++..|++++|.++|.++...... ..+....+..+.+..|++..+...+.++-..- ++ ..
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~---~~ 93 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIK---PD---HS 93 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TT---CH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---Cc---hH
Confidence 34677999999999999999999999998876532 24677778888888999999999998876641 11 11
Q ss_pred hhhHHHHHhccccCCHHHHHHHH
Q 016653 175 RLKVYEGLYCMSTRNFKKAASLF 197 (385)
Q Consensus 175 ~l~~~~gl~~l~~r~~~~Aa~~f 197 (385)
......|..+...|+|.+|...|
T Consensus 94 ~~~~~la~~~~~~g~~~~A~~~~ 116 (537)
T 3fp2_A 94 KALLRRASANESLGNFTDAMFDL 116 (537)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 22344677788899999999888
No 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=92.67 E-value=0.85 Score=36.36 Aligned_cols=65 Identities=15% Similarity=0.086 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~ 164 (385)
..++..+|..|...|++++|.++|.++....... .+..+....+....|+++.+...+.++-...
T Consensus 52 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 52 ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE---PRFPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4678899999999999999999999988765332 3455677778888999999999999988764
No 147
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=92.58 E-value=0.89 Score=40.31 Aligned_cols=93 Identities=13% Similarity=-0.036 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCCChhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGGDWER 172 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~----~~~~~~~~~~i~ka~~~~~~~~~~~~ 172 (385)
..+++.+|..|...|++++|.++|.+..+. + ..+.+..+-.+... .++++.+...+.++-.. +++.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~- 75 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL----K-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NYSN- 75 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH-
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----C-CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CCHH-
Confidence 356788888888888888888888887662 1 12455556666666 78888888888876553 1222
Q ss_pred hhhhhHHHHHhccc----cCCHHHHHHHHHhccc
Q 016653 173 KNRLKVYEGLYCMS----TRNFKKAASLFLDSIS 202 (385)
Q Consensus 173 ~~~l~~~~gl~~l~----~r~~~~Aa~~f~e~~~ 202 (385)
....-|..+.. .+++.+|...|-.+..
T Consensus 76 ---a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 76 ---GCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp ---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 11234555666 8888888888877653
No 148
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.58 E-value=0.71 Score=45.90 Aligned_cols=102 Identities=12% Similarity=-0.033 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc-CCChhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE-GGDWERKNR 175 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~-~~~~~~~~~ 175 (385)
..++..+|..|...|++++|.++|.++.+........ +..+..+....|+++.+...+.++...... +.+|.....
T Consensus 441 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 441 HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL---LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 3567778888888888888888888877655432222 345556666778888888888887776433 334443233
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhcc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
.-..-|..+...|+|.+|...|-.++
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 33445556677888888887776654
No 149
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=92.44 E-value=1.2 Score=38.84 Aligned_cols=61 Identities=15% Similarity=-0.009 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~ 162 (385)
.++..+|..|...|++++|.+++.++.+....... ......+....|++..+...+.++-.
T Consensus 112 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 112 YAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF----RSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 56777777777788888888777777665433221 11122333555777777766655544
No 150
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=92.39 E-value=0.096 Score=42.93 Aligned_cols=92 Identities=21% Similarity=0.172 Sum_probs=66.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhHHHH
Q 016653 102 AKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEG 181 (385)
Q Consensus 102 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~~~g 181 (385)
.||.++.+.|++++|++.+.+.... ........+.+-++....|+|+.+...+.++-..-. .++ ..-..-|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~---~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~----~a~~~lg 72 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS---PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDP----KAHRFLG 72 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS---HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH----HHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHH
Confidence 4788999999999999999876543 233445667888899999999999999998876521 122 2224467
Q ss_pred HhccccCCHHHHHHHHHhccc
Q 016653 182 LYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 182 l~~l~~r~~~~Aa~~f~e~~~ 202 (385)
..+...|+|..|...|-.++.
T Consensus 73 ~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 73 LLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCchHHHHHHHHHHHH
Confidence 788899999999999988753
No 151
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.24 E-value=0.54 Score=45.46 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|...|++++|.+.|.++.+..... ......+..+....|+++.+...+.++-.... .++ ..
T Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~ 374 (514)
T 2gw1_A 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN---IFPYIQLACLAYRENKFDDCETLFSEAKRKFP--EAP----EV 374 (514)
T ss_dssp THHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC---SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST--TCS----HH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc--cCH----HH
Confidence 3568889999999999999999999887765432 33556666677778999999888888766521 122 23
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
....|..+...|+|..|...|-.++
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3556777888889999888887664
No 152
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=92.12 E-value=1.8 Score=42.46 Aligned_cols=71 Identities=14% Similarity=-0.033 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh---hccc--hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHh
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESK---TVAV--GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~---~~~~--~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~ 165 (385)
++...+..||..|...|+|++|..++.++.+- .-++ -.....+.++-.+....|+++.|...+.||-.+.+
T Consensus 338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 44555666666666666666666666665422 1111 22334444555555556666666666666666554
No 153
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=92.11 E-value=0.66 Score=48.72 Aligned_cols=98 Identities=8% Similarity=-0.154 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhh
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKN 174 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~ 174 (385)
+-..++..+|..|.+.|++++|.++|.++.+... ...+...++-.+....|+++.+...+.+|-.+- ..+++
T Consensus 75 ~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P---~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~--- 146 (723)
T 4gyw_A 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP---AFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPD--- 146 (723)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHH---
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH---
Confidence 3457899999999999999999999999887643 235677778888888999999999998887652 11221
Q ss_pred hhhHHHHHhccccCCHHHHHHHHHhcc
Q 016653 175 RLKVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 175 ~l~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
....-|..+...++|.+|.+.|-.+.
T Consensus 147 -a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 147 -AYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp -HHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred -HHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 12335667778999999988876654
No 154
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=92.05 E-value=1 Score=33.72 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..+...|++++|.+++.++...... .......+..+....|++..+...+.++-..
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356889999999999999999999998765432 2345667777788889999999988887654
No 155
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=92.02 E-value=0.75 Score=37.93 Aligned_cols=64 Identities=11% Similarity=-0.075 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..|...|++++|.++|.++....... .+..+++-.+....|+++.+...+.++-..
T Consensus 70 ~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~---~~~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 70 VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKND---YTPVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSC---CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5679999999999999999999999988765432 346677778888899999999999988775
No 156
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=92.01 E-value=0.8 Score=35.59 Aligned_cols=65 Identities=17% Similarity=0.176 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~ 164 (385)
..++..+|..|...|++++|.+.+.++...... .......+..+....|++..+...+.++-..-
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 43 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 467899999999999999999999998876532 34567777778888999999999999888763
No 157
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=91.98 E-value=0.87 Score=33.73 Aligned_cols=64 Identities=16% Similarity=-0.013 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..|...|++++|.+.+.++.+...+ ..........+....|++..+...+.++-..
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 457889999999999999999999998876533 2355667777788889999999888877654
No 158
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=91.75 E-value=0.9 Score=36.86 Aligned_cols=65 Identities=9% Similarity=0.046 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF 164 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~ 164 (385)
..+++.+|..|...|++++|.++|.++...... -.+..+.+-.+....|+++.+...+.++-..-
T Consensus 55 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 55 SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---EPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999998766432 23556777778888999999999999987764
No 159
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=91.62 E-value=1 Score=35.06 Aligned_cols=63 Identities=10% Similarity=-0.135 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~ 162 (385)
..+++.+|..+...|++++|.++|.++.+.... ..+....+..+....|+++.+...+.++-.
T Consensus 51 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 51 EEAWRSLGLTQAENEKDGLAIIALNHARMLDPK---DIAVHAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 568999999999999999999999998876533 235666777777788999988888877654
No 160
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=91.47 E-value=0.75 Score=35.15 Aligned_cols=64 Identities=11% Similarity=-0.043 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..|...|++++|.+++.++...... .......+..+....|+++.+...+.++-..
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT---FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 356888999999999999999999998875432 2456677777888889999999998887765
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=91.28 E-value=2.7 Score=33.98 Aligned_cols=64 Identities=14% Similarity=0.072 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..|...|++++|.+.+.++.+.... ....++..-.+....|+++.+...+.++-.+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREET---NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 467899999999999999999999998876432 3456777788888899999999999988776
No 162
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=91.23 E-value=2.4 Score=42.32 Aligned_cols=100 Identities=8% Similarity=0.002 Sum_probs=72.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhhh---ccchh--HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc--C-CChhhh
Q 016653 102 AKSLFYIQIGDKEKALEQLKVTESKT---VAVGQ--KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE--G-GDWERK 173 (385)
Q Consensus 102 ~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~~~--~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~--~-~~~~~~ 173 (385)
..+.-+...|+|++|...|.+..+.. -++.| .+..+-++..+....|+|+.+.....++-...+. | .+|+.
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~- 392 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL- 392 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH-
Confidence 44555778999999999999876443 23333 6677788888888999999999999998887654 2 23332
Q ss_pred hhhhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 174 NRLKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 174 ~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
+....--|..+..+|+|.+|..+|-.++.
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 21122256677889999999999887753
No 163
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=91.17 E-value=1.2 Score=32.54 Aligned_cols=61 Identities=20% Similarity=0.069 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHH-hHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMD-LVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 100 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id-~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
.+.+|..++..|++++|.+.|.++.+..... .. ..+..-.+....|++..+...+.++-..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3578899999999999999999987654322 23 5666666777889999999988887765
No 164
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=90.83 E-value=0.98 Score=42.26 Aligned_cols=63 Identities=14% Similarity=-0.002 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~ 162 (385)
..++..+|..|...|++++|.++|.++..... ...+.+..+..+....|+++.+...+.++-.
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKP---DFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677778888888888888887777665432 1234455555666666777766666665543
No 165
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=90.68 E-value=1.5 Score=39.89 Aligned_cols=61 Identities=8% Similarity=-0.037 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka 160 (385)
..+++.+|..+.+.|++++|...|.++...... ..+...++.++.+..|+++.+...+.++
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 356788888888888888888888887765432 2456777777888888888887776665
No 166
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=90.47 E-value=0.51 Score=46.57 Aligned_cols=96 Identities=13% Similarity=-0.112 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHh---------cCHHHHHhHHHHHHHHHhcC
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY---------MDFDLISKSIDKAKSLFEEG 167 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~---------~~~~~~~~~i~ka~~~~~~~ 167 (385)
..+++.+|..|+..|++++|.++|.++.+.... ...+..+..+.... |+++.+...+.++-..-.
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-- 210 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN----KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-- 210 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC----HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--
Confidence 468999999999999999999999999877543 25666666666677 888888888888766521
Q ss_pred CChhhhhhhhHHHHHhcccc--------CCHHHHHHHHHhccc
Q 016653 168 GDWERKNRLKVYEGLYCMST--------RNFKKAASLFLDSIS 202 (385)
Q Consensus 168 ~~~~~~~~l~~~~gl~~l~~--------r~~~~Aa~~f~e~~~ 202 (385)
.++. ....-|..++.. ++|.+|...|-.++.
T Consensus 211 ~~~~----~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~ 249 (474)
T 4abn_A 211 LDGR----SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249 (474)
T ss_dssp TCHH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCHH----HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 1221 122344455555 889999998887653
No 167
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=90.37 E-value=1.5 Score=43.81 Aligned_cols=63 Identities=13% Similarity=0.000 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHh---cCHHHHHhHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY---MDFDLISKSIDKAKS 162 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~---~~~~~~~~~i~ka~~ 162 (385)
..+++.+|..|...|++++|.++|.+..+...+ ..+....+..+.... |+++.+...+.++-.
T Consensus 91 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 91 PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE---EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 456777778888888888888777777655432 234555566666666 666666665555533
No 168
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=90.34 E-value=0.95 Score=33.52 Aligned_cols=55 Identities=18% Similarity=0.203 Sum_probs=42.7
Q ss_pred HHHhccccc---cccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 300 YSQFLESYK---SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 300 ~~qy~~pY~---~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
+..++.... .++...||+.||+|...+.+.|.+|..+|.|.- ++...|.=....+
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~-~g~~~~~W~i~~~ 72 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQK-EAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ESSSSCEEEEC--
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe-cCCCCCeeEEeCc
Confidence 346666666 899999999999999999999999999999843 4454566555544
No 169
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=90.26 E-value=1.9 Score=40.20 Aligned_cols=91 Identities=12% Similarity=0.057 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|...|++++|.++|.++.+.... ....++..-.+....|+++.+...+.++-.+-- .++. .
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~----a 266 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSN---NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKA----A 266 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHH----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHH----H
Confidence 467999999999999999999999999876533 345677778888889999999999999877521 1211 2
Q ss_pred hHHHHHhccccCCHHHHHHH
Q 016653 177 KVYEGLYCMSTRNFKKAASL 196 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~ 196 (385)
...-|..+...+++..|...
T Consensus 267 ~~~l~~~~~~~~~~~~a~~~ 286 (336)
T 1p5q_A 267 KTQLAVCQQRIRRQLAREKK 286 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22344555667777777543
No 170
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=90.13 E-value=2.4 Score=37.35 Aligned_cols=92 Identities=18% Similarity=0.073 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCCC
Q 016653 98 EAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGGD 169 (385)
Q Consensus 98 ~a~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~----~~~~~~~~~~i~ka~~~~~~~~~ 169 (385)
.+++.+|..|.. .|++++|.++|.+..+.. ..+.+..+-.+... .+++..+...+.++-.. ++
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~ 109 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KY 109 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CC
Confidence 578899999999 999999999999887652 34556666667777 89999999888887654 23
Q ss_pred hhhhhhhhHHHHHhccc----cCCHHHHHHHHHhccc
Q 016653 170 WERKNRLKVYEGLYCMS----TRNFKKAASLFLDSIS 202 (385)
Q Consensus 170 ~~~~~~l~~~~gl~~l~----~r~~~~Aa~~f~e~~~ 202 (385)
+.. ...-|..+.. .+++.+|...|-.+..
T Consensus 110 ~~a----~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 110 AEG----CASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHH----HHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred ccH----HHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 221 1234555566 8999999999887754
No 171
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=90.10 E-value=2.3 Score=39.68 Aligned_cols=96 Identities=8% Similarity=-0.125 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..+...|++++|.+.|.+....... .......+..+....|+++.+...+.++-..- ..++. .
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~----~ 273 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPN---HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ--PHFPD----A 273 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SSCHH----H
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHH----H
Confidence 355666777777777777777776666544321 12344445555556666666666666554421 01111 1
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
...-|..+...|+|.+|...|-.+.
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1223444555566666666555443
No 172
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=89.91 E-value=0.8 Score=33.50 Aligned_cols=55 Identities=18% Similarity=0.231 Sum_probs=43.0
Q ss_pred HHHhccccc---cccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 300 YSQFLESYK---SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 300 ~~qy~~pY~---~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
+..++..-. .++...||+.+|+|...+.+.|.+|..+|.|...-+ ..|.=....+
T Consensus 19 IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~-~~~~W~i~~~ 76 (77)
T 1qgp_A 19 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAG-TPPLWKIAVS 76 (77)
T ss_dssp HHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECS-SSCEEEECCC
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCC-CCCceEecCC
Confidence 446666666 899999999999999999999999999999966533 3355554443
No 173
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=89.90 E-value=0.21 Score=49.61 Aligned_cols=95 Identities=11% Similarity=-0.022 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|..|.+.|++++|.++|.++.+.... .......+..+....|+++.+...+.++-..-. .++...
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p--~~~~~~--- 111 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKK---YIKGYYRRAASNMALGKFRAALRDYETVVKVKP--HDKDAK--- 111 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCTTHH---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH---
Confidence 577888999999999999999999888765432 245566667777788999999888888776521 122211
Q ss_pred hHHHHHh--ccccCCHHHHHHHHHhc
Q 016653 177 KVYEGLY--CMSTRNFKKAASLFLDS 200 (385)
Q Consensus 177 ~~~~gl~--~l~~r~~~~Aa~~f~e~ 200 (385)
...|.. ++..++|.+|.+.+-+.
T Consensus 112 -~~l~~~~~~~~~g~~~~A~~~~~~~ 136 (477)
T 1wao_1 112 -MKYQECNKIVKQKAFERAIAGDEHK 136 (477)
T ss_dssp -HHHHHHHHHHHHHHHCCC------C
T ss_pred -HHHHHHHHHHHHHHHHHHhcccccc
Confidence 222333 66778888888877654
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=89.35 E-value=4.5 Score=38.40 Aligned_cols=68 Identities=10% Similarity=0.053 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 93 ~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
......++..+|..|+..|++++|.+++.++.+.... ....++..-.+....|+++.+...+.+|-.+
T Consensus 269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444678999999999999999999999999876532 3456677777888899999999999998776
No 175
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=89.31 E-value=2.4 Score=39.08 Aligned_cols=100 Identities=11% Similarity=-0.064 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhH
Q 016653 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (385)
Q Consensus 99 a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~ 178 (385)
+.+.+|..+++.|++++|..++....... .+....+..+.+-.+.-..|++..+...+.++... ..+|........
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g---~~~P~~~~da~~ 212 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS---PAGEACARAIAW 212 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---TTTTTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC---CCCccccHHHHH
Confidence 88999999999999999999997554332 12122345666666677789999999999987631 111443444557
Q ss_pred HHHHhccccCCHHHHHHHHHhccc
Q 016653 179 YEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 179 ~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
+.|+.+...|+..+|...|-.+..
T Consensus 213 ~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 213 YLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 899999999999999999977654
No 176
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=89.30 E-value=3.8 Score=39.99 Aligned_cols=98 Identities=8% Similarity=-0.092 Sum_probs=71.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhhh---ccc--hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc---CCChhhhhh
Q 016653 104 SLFYIQIGDKEKALEQLKVTESKT---VAV--GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE---GGDWERKNR 175 (385)
Q Consensus 104 a~~~~~~Gd~~~A~~~~~~~~~~~---~~~--~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~---~~~~~~~~~ 175 (385)
..-+.+.|+|++|.+.+.+..+.. -++ -..+...-++..++...|+|+.+..+..++-...+. ..+|.. +.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~-a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR-GV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH-HH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH-HH
Confidence 334557899999999999987543 222 336677888888889999999999999999887655 223332 22
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
...--|..+..+|+|.+|..+|-.++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 222256678889999999999887753
No 177
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=88.95 E-value=1.9 Score=36.24 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..|...|++++|.+++.++...... ....++.+..+....|+++.+...+.++-..
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN---NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 467899999999999999999999998876432 2456777778888899999999999988765
No 178
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=88.91 E-value=2.1 Score=44.22 Aligned_cols=95 Identities=8% Similarity=-0.106 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..+++.+|..|...|++++|.+.|.++.+..... .+..+++-.+....|+++. ...+.+|-..-- .++ ..
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P--~~~----~a 536 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---LAPKLALAATAELAGNTDE-HKFYQTVWSTND--GVI----SA 536 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT--TCH----HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC--chH----HH
Confidence 4678899999999999999999999887664322 3455666667777889888 888877765411 111 12
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
....|..++..|+|.+|...|-.++
T Consensus 537 ~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 537 AFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 2446778889999999999988765
No 179
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=88.90 E-value=2.5 Score=36.33 Aligned_cols=92 Identities=17% Similarity=0.151 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhc----CHHHHHhHHHHHHHHHhcCCChhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM----DFDLISKSIDKAKSLFEEGGDWER 172 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~----~~~~~~~~i~ka~~~~~~~~~~~~ 172 (385)
..+++.||.+|...||+++|.++|.+..+.- ..+.+..+-.+... + |+..+..++.++-. . +++.-
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~---~-g~~~a 87 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE---A-GSKSG 87 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH---T-TCHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH---C-CCHHH
Confidence 4679999999999999999999999986532 12333333333333 5 78888888888732 2 34332
Q ss_pred hhhhhHHHHHhccc----cCCHHHHHHHHHhccc
Q 016653 173 KNRLKVYEGLYCMS----TRNFKKAASLFLDSIS 202 (385)
Q Consensus 173 ~~~l~~~~gl~~l~----~r~~~~Aa~~f~e~~~ 202 (385)
. ..-|..+.. .+++.+|..+|-.+..
T Consensus 88 ~----~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 88 E----IVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp H----HHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred H----HHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 2 234555555 8899999999998753
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=88.19 E-value=2.4 Score=41.45 Aligned_cols=94 Identities=10% Similarity=0.118 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..+++.+|..|++.|++++|+++|.++.+.... ....++..-.+....|++..+...+.+|-.+--. +. ..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--~~----~a 387 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA---NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--NK----AA 387 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----------CH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CH----HH
Confidence 577999999999999999999999998876532 3566778888888999999999999998775211 11 11
Q ss_pred hHHHHHhccccCCHHHHHHHHHh
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLD 199 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e 199 (385)
....|..+...+++..|...++.
T Consensus 388 ~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 388 RLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22344455566777777655443
No 181
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=88.01 E-value=2.8 Score=41.04 Aligned_cols=94 Identities=11% Similarity=0.123 Sum_probs=68.7
Q ss_pred HHhCCHHHHHHHHHHHHhh---hccch--hHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc--C-CChhhhhhhhHH
Q 016653 108 IQIGDKEKALEQLKVTESK---TVAVG--QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE--G-GDWERKNRLKVY 179 (385)
Q Consensus 108 ~~~Gd~~~A~~~~~~~~~~---~~~~~--~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~--~-~~~~~~~~l~~~ 179 (385)
...|+|++|.+.|.+..+. .-++. ..+..+-++..++...|+|+.+.....++-...++ | .+|+... .-.-
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~-~l~n 387 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS-MWLK 387 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH-HHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH-HHHH
Confidence 3569999999999987643 23333 35677778888888999999999999999888665 2 2333322 1122
Q ss_pred HHHhccccCCHHHHHHHHHhccc
Q 016653 180 EGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 180 ~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
-|..+..+|+|.+|..+|-.++.
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHH
Confidence 56678899999999999887653
No 182
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=87.92 E-value=2.7 Score=38.18 Aligned_cols=97 Identities=10% Similarity=-0.094 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..++..+|.++...|++++|.++|.++......... .+......+....|+++.+...+.+|-.... .+ .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~------~ 168 (308)
T 2ond_A 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--LVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TR------H 168 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CC------T
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CC------H
Confidence 467899999999999999999999998875432111 1555566666677899988888888765421 11 1
Q ss_pred hHHHHHhccc---cCCHHHHHHHHHhcccc
Q 016653 177 KVYEGLYCMS---TRNFKKAASLFLDSIST 203 (385)
Q Consensus 177 ~~~~gl~~l~---~r~~~~Aa~~f~e~~~t 203 (385)
.++.+...+. .|++..|...|-.++..
T Consensus 169 ~~~~~~a~~~~~~~~~~~~A~~~~~~al~~ 198 (308)
T 2ond_A 169 HVYVTAALMEYYCSKDKSVAFKIFELGLKK 198 (308)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2343444443 69999999998777643
No 183
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=87.49 E-value=1.6 Score=34.26 Aligned_cols=64 Identities=5% Similarity=0.131 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 288 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
...+++.++..+...-+.|=..+ +...||+.||+|..-+-+-+..|...|-|.. .+..|+....
T Consensus 11 ~~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~--~~~~G~~V~~ 75 (113)
T 3tqn_A 11 YQQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEK--RRGLGMLVKA 75 (113)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECT
T ss_pred HHHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEeC
Confidence 45788889998899899999999 9999999999999999999999999998754 3566766654
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=87.47 E-value=1.6 Score=43.21 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKT 127 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~ 127 (385)
..+++.+|..|...|++++|.++|.++.+..
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3456666666666777777766666665543
No 185
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.21 E-value=0.87 Score=32.21 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=36.1
Q ss_pred HHHHHHHHhcccc-ccccHHHHHHHhCCChHHHHHHHHHHHhCCccce
Q 016653 295 VRTVVYSQFLESY-KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 295 iR~~~~~qy~~pY-~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a 341 (385)
+|.+++ .++... ..++...||+.||+|...+.+.|..|..+|-|..
T Consensus 11 ~~~~IL-~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 11 LEQKIL-QVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHH-HHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHH-HHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 444443 344333 4699999999999999999999999999998744
No 186
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=86.84 E-value=4.6 Score=39.40 Aligned_cols=73 Identities=15% Similarity=-0.092 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh---hccc--hhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc
Q 016653 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESK---TVAV--GQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE 166 (385)
Q Consensus 94 ~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~---~~~~--~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~ 166 (385)
..+...+..+|..|...|+|++|.+++.++.+- .-++ -.....+.++-.+....|+++.|...+.||-...+.
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 456677999999999999999999999987633 2222 335567778888888899999999999999998765
No 187
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=86.78 E-value=5 Score=36.36 Aligned_cols=102 Identities=8% Similarity=-0.043 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 98 EAHLAKSLFYIQ-IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 98 ~a~~~la~~~~~-~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..+...|.+.+. .|++++|.++|.+..+.+.. ..+++...+......|+++.+...+.++-.... .+|+....+
T Consensus 169 ~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~--l~p~~~~~l 243 (308)
T 2ond_A 169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--LPPEKSGEI 243 (308)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS--SCGGGCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC--CCHHHHHHH
Confidence 345556666544 69999999999998877643 346677777788888999999999999877410 122212222
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccccC
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSISTF 204 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~t~ 204 (385)
-..-+-.....|++..|...+-.+...+
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 2333334456789988888877665444
No 188
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=86.16 E-value=4.6 Score=30.25 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=48.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEec--CCCEEEEcCCCchhHHHHHHHHhhHHHHHHH
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK--VAGVLETNRPDAKNALYQATIKQGDFLLNRI 376 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~--~~giv~~~~~d~~~~~y~~~i~~g~~l~~r~ 376 (385)
...++...+|+.+|++...+-+.|..|...|-+...-|. ..+.+... +.....++.+...-+.+.+++
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t--~~g~~~~~~~~~~~~~~~~~~ 101 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSA--EKPEKVLKEFKSSILGEIERI 101 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEE--CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEec--CcHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999999999999999876654 23333333 334455566555544444443
No 189
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=85.64 E-value=1.7 Score=34.75 Aligned_cols=64 Identities=9% Similarity=0.113 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 288 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
...+++.++..+...-+.|=..+ +...||+.||+|..-+-+-+..|..+|-|.. -+..|+....
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 46788899998888889999999 9999999999999999999999999998743 4566777664
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=85.56 E-value=1.2 Score=41.71 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
.+++.+|..|...|++++|.++|.++.+.... ....++..-.+....|+++.+...+.++-.+
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK---NPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999998876432 3456777778888899999999999887654
No 191
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=85.51 E-value=1.4 Score=34.10 Aligned_cols=57 Identities=16% Similarity=0.237 Sum_probs=46.9
Q ss_pred HHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 296 RTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 296 R~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
|..++ ..+.|-..+ +...||+.||+|..-+-+.|..|..+|-|..+=....|+....
T Consensus 30 ~~~I~-~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~ 87 (102)
T 2b0l_A 30 IEHIF-EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKV 87 (102)
T ss_dssp HHHHT-TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEE
T ss_pred HHHHH-hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEec
Confidence 77777 788888888 9999999999999999999999999998865432245766554
No 192
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=85.06 E-value=1.6 Score=41.00 Aligned_cols=64 Identities=11% Similarity=0.083 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHHhHHHhhhchhHhHh-HHHHHHHHHHHHHHHhcccc----ccccHHHHHHHhCCC-hHHHHHHH
Q 016653 262 CQYKSFFSAFAGLTEQIKLDRYLYPH-FRYYMREVRTVVYSQFLESY----KSVTIEAMAKAFGVT-VEFIDVEL 330 (385)
Q Consensus 262 ~~y~~~~~~L~~~~~~l~~D~~l~~h-~~~l~~~iR~~~~~qy~~pY----~~I~l~~mA~~fg~s-~~~iE~~L 330 (385)
++|..||+....- .-+|+..+ .+.++..+|.+++..+.++| ..++++.+++.||.+ ++++.+.+
T Consensus 177 gNY~rFFrL~~~~-----~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~ 246 (316)
T 3t5v_A 177 NFYARFFQLMQSP-----SLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFC 246 (316)
T ss_dssp CCHHHHHHHHTCT-----TSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHH
T ss_pred chHHHHHHHHhcc-----CCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 5799999866531 13555544 34567899999999999999 489999999999995 55554444
No 193
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=84.42 E-value=15 Score=35.32 Aligned_cols=129 Identities=15% Similarity=0.079 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc-----------------------chhHHHhHHHH--------------
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVA-----------------------VGQKMDLVFYT-------------- 140 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-----------------------~~~~id~~l~~-------------- 140 (385)
.+.+.||++|.+.|++++-.+++...+.+... .+..+++|...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999988888776655422 12233333322
Q ss_pred ------HHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhH
Q 016653 141 ------LQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDT 214 (385)
Q Consensus 141 ------i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~ 214 (385)
..+.+..|+|..+.+.+.++...+....|....-.+-.....++...||+..+-..+..+-.+.++ -..+|.-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a-i~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA-IYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-SCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc-CCCCHHH
Confidence 234556688888888888877766543333333333444666777889999888777665432211 1134544
Q ss_pred HHHHHHHHHHhhC
Q 016653 215 FIFYTVLTSIISL 227 (385)
Q Consensus 215 ~~~Y~~l~al~s~ 227 (385)
.+.+-..++++.+
T Consensus 179 ~a~i~~~~Gi~~l 191 (394)
T 3txn_A 179 QGALDLQSGILHA 191 (394)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHH
Confidence 4555555666655
No 194
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=84.41 E-value=5.5 Score=32.61 Aligned_cols=97 Identities=14% Similarity=0.052 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..+++.+|..|...|++++|.+++.++..... . .........+... ..++...+...+.++-. ..++ ....
T Consensus 40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~-~~~~~~~~~~~~~-~~~~~~~a~~~~~~al~---~~P~---~~~~ 110 (176)
T 2r5s_A 40 GDVKLAKADCLLETKQFELAQELLATIPLEYQ-D-NSYKSLIAKLELH-QQAAESPELKRLEQELA---ANPD---NFEL 110 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-C-HHHHHHHHHHHHH-HHHTSCHHHHHHHHHHH---HSTT---CHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-C-hHHHHHHHHHHHH-hhcccchHHHHHHHHHH---hCCC---CHHH
Confidence 56789999999999999999999988765443 1 1121222212111 11111223333443332 2111 1123
Q ss_pred hHHHHHhccccCCHHHHHHHHHhccc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
...-|..+...|+|.+|...|-.++.
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~ 136 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILK 136 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34567788899999999999988754
No 195
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=84.22 E-value=1.5 Score=42.05 Aligned_cols=97 Identities=3% Similarity=-0.082 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhh
Q 016653 97 REAHLAKSLFYIQIGD-KEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNR 175 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd-~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~ 175 (385)
-.++..+|..+...|+ +++|+++|.++...... ..+.+.+.-.+....|++..+...+.++-.+-- .+. .
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP--~~~----~ 201 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQVWHHRRVLVEWLRDPSQELEFIADILNQDA--KNY----H 201 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT--TCH----H
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--cCH----H
Confidence 4678899999999996 99999999988776432 234555555566677999999888888766421 111 1
Q ss_pred hhHHHHHhccccCCHHHHHHHHHhccc
Q 016653 176 LKVYEGLYCMSTRNFKKAASLFLDSIS 202 (385)
Q Consensus 176 l~~~~gl~~l~~r~~~~Aa~~f~e~~~ 202 (385)
.-...|..+...|+|.+|...|-.++.
T Consensus 202 a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 202 AWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 123466677778899998888877653
No 196
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=83.99 E-value=2.3 Score=33.88 Aligned_cols=65 Identities=9% Similarity=0.123 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 287 HFRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 287 h~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
-...+++.|+..+...-+.|=..+ +...||+.||+|..-+-+-+..|..+|-|.. -+..|+....
T Consensus 14 ~~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~ 79 (125)
T 3neu_A 14 IYSQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYA--KRGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEE--ecCCEEEEec
Confidence 346788899998888899999999 5999999999999999999999999998754 3556777665
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=83.78 E-value=6.5 Score=32.88 Aligned_cols=63 Identities=8% Similarity=-0.121 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhh-------hccchhHHHhH----HHHHHHHHHhcCHHHHHhHHHHHHHHH
Q 016653 99 AHLAKSLFYIQIGDKEKALEQLKVTESK-------TVAVGQKMDLV----FYTLQLGFFYMDFDLISKSIDKAKSLF 164 (385)
Q Consensus 99 a~~~la~~~~~~Gd~~~A~~~~~~~~~~-------~~~~~~~id~~----l~~i~~~i~~~~~~~~~~~i~ka~~~~ 164 (385)
++..+|..+.+.|+|++|+.+|.+..+. ..+ ....+ .+.-.+....|+++.+.....++-.+.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd---~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD---EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc---hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999886 332 23333 666667777899999999999999874
No 198
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=83.27 E-value=2.9 Score=33.71 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=56.9
Q ss_pred hHHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcC
Q 016653 287 HFRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 354 (385)
Q Consensus 287 h~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~ 354 (385)
-...+++.||..+...-+.|=..+ +...||+.||+|..-+-+-+..|..+|-+..+ +..|+.+...
T Consensus 15 lY~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~~ 81 (134)
T 4ham_A 15 IYEQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIANQ 81 (134)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeCC
Confidence 346788899999999999999999 89999999999999999999999999988654 5667776543
No 199
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=82.49 E-value=4.9 Score=32.65 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=52.1
Q ss_pred HHHHHHHHHH-HHHhCCH--HHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLF-YIQIGDK--EKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~-~~~~Gd~--~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|.. |...|++ ++|.+++.++...... .....+.+..+....|++..+...+.++-..
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN---EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 4578899999 8899999 9999999998876532 2356677778888899999999998887665
No 200
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=82.42 E-value=5.1 Score=36.07 Aligned_cols=64 Identities=17% Similarity=0.190 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..++..+|..|...|++++|.+.+.++.+...+ ..........+....|+++.+...+.++-..
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 38 AVYYTNRALCYLKMQQPEQALADCRRALELDGQ---SVKAHFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 457889999999999999999999988765432 2345566667777889999999999888775
No 201
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=82.32 E-value=2.9 Score=40.01 Aligned_cols=99 Identities=8% Similarity=-0.054 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcC-HHHHHhHHHHHHHHHhcCCChhh
Q 016653 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMD-FDLISKSIDKAKSLFEEGGDWER 172 (385)
Q Consensus 94 ~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~-~~~~~~~i~ka~~~~~~~~~~~~ 172 (385)
..-..++..+|..+...|++++|+++|.++...... ..+.+...-.+....|+ +..+...+.++-.+-- .+
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~--- 165 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KN--- 165 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TC---
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CC---
Confidence 344678899999999999999999999998876533 23445555556666785 9999999888776521 11
Q ss_pred hhhhhHHHHHhccccCCHHHHHHHHHhcc
Q 016653 173 KNRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 173 ~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
...-...|..+...|+|.+|...|-.++
T Consensus 166 -~~a~~~~g~~~~~~g~~~eAl~~~~kal 193 (382)
T 2h6f_A 166 -YQVWHHRRVLVEWLRDPSQELEFIADIL 193 (382)
T ss_dssp -HHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1222346777778899999998887765
No 202
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=82.19 E-value=15 Score=31.23 Aligned_cols=97 Identities=13% Similarity=0.027 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCC
Q 016653 97 REAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGG 168 (385)
Q Consensus 97 r~a~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~----~~~~~~~~~~i~ka~~~~~~~~ 168 (385)
..+++.||.+|.. .+|+++|.++|.+..+.-.+. ...+.+..+-.+... .+|+..+...+.++-.. ++
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~ 160 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESD-AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL---SR 160 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH-HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT---SC
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCc-chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc---CC
Confidence 4577888888887 788888888888776543210 124455555555555 56788888888777554 23
Q ss_pred ChhhhhhhhHHHHHhcc------ccCCHHHHHHHHHhcc
Q 016653 169 DWERKNRLKVYEGLYCM------STRNFKKAASLFLDSI 201 (385)
Q Consensus 169 ~~~~~~~l~~~~gl~~l------~~r~~~~Aa~~f~e~~ 201 (385)
++.-. ..-|.++. ..+++.+|..+|-.+.
T Consensus 161 ~~~a~----~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 161 TGYAE----YWAGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp TTHHH----HHHHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred CHHHH----HHHHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 33221 12333332 2347888888776653
No 203
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=81.82 E-value=3.2 Score=33.38 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 288 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
...+++.|+..+...-+.|=..+ +...||+.||+|..-+-+-+..|...|-|.. -+..|+....
T Consensus 6 ~~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~~ 70 (129)
T 2ek5_A 6 YKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVSA 70 (129)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEECT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEec
Confidence 45778889998888888999999 9999999999999999999999999998743 4566776654
No 204
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=81.68 E-value=2.7 Score=30.49 Aligned_cols=41 Identities=22% Similarity=0.143 Sum_probs=34.8
Q ss_pred HHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccce
Q 016653 301 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 301 ~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a 341 (385)
..++.....++.+.||+.||+|...+-+.|..|...|-|..
T Consensus 6 l~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 6 LEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 34444446799999999999999999999999999999863
No 205
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=81.60 E-value=0.78 Score=35.16 Aligned_cols=65 Identities=15% Similarity=0.278 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcC
Q 016653 288 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 354 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~ 354 (385)
...+++.+|.+++...+.|=..+ +...||+.||+|..-+-+.|..|...|-|..+ +..|+.....
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~~--~g~G~~v~~~ 78 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSSR--GALGTVVEKN 78 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEEE--TTTEEESCSC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCCeEEEccC
Confidence 46778888888887788888888 99999999999999999999999999988542 3346555443
No 206
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=81.58 E-value=12 Score=28.38 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=39.0
Q ss_pred HHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEec
Q 016653 295 VRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK 345 (385)
Q Consensus 295 iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~ 345 (385)
.|.+++.. + ....++...+|+.+|+|...+-+.|..|...|-+..+-+.
T Consensus 22 ~r~~IL~~-L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~g 70 (114)
T 2oqg_A 22 TRWEILTE-L-GRADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKVG 70 (114)
T ss_dssp HHHHHHHH-H-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHH-H-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecC
Confidence 34444443 3 3456899999999999999999999999999999876663
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=81.23 E-value=13 Score=30.88 Aligned_cols=34 Identities=18% Similarity=0.106 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTV 128 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~ 128 (385)
.-|+++|.||--|++.|||++|.+++..+.+.-+
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 5688999999999999999999999988776543
No 208
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=80.94 E-value=35 Score=31.60 Aligned_cols=180 Identities=11% Similarity=0.059 Sum_probs=97.5
Q ss_pred HHHHHHhCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHH---HHHHHHHHHHHHHHHhCCH
Q 016653 37 VFSMVKAHDMASFYETLVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGES---EVREAHLAKSLFYIQIGDK 113 (385)
Q Consensus 37 ~~~~ik~~~m~~~y~~~~~~~~~~~D~~~~~~~~~~~~~~l~~Le~~l~~~~~n~~~~---~ir~a~~~la~~~~~~Gd~ 113 (385)
+.+.+. +.-..+++.+++. +.+.+..+ -+-..........++-++-+....... .-..++...+.++...|+.
T Consensus 77 la~~~~-~~a~~~l~~l~~~-~~~~~~~~--~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~ 152 (310)
T 3mv2_B 77 YVQFLD-TKNIEELENLLKD-KQNSPYEL--YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV 152 (310)
T ss_dssp HHHHHT-TTCCHHHHHTTTT-SCCCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhc-ccHHHHHHHHHhc-CCCCcHHH--HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH
Confidence 445554 4455666655443 11222222 244444455566666666665542221 2357788899999999999
Q ss_pred HHHHHHHHHHHhhhc---cchhHHHhHHHHHHHHHHhc--CHHHHHhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccC
Q 016653 114 EKALEQLKVTESKTV---AVGQKMDLVFYTLQLGFFYM--DFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTR 188 (385)
Q Consensus 114 ~~A~~~~~~~~~~~~---~~~~~id~~l~~i~~~i~~~--~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r 188 (385)
+.|.+.+.++..... ..+.-+-..+...-+.+..| ++..+...+..+ .+..++|....- .+. .+++.|
T Consensus 153 d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El---~~~~p~~~~~~l--Lln--~~~~~g 225 (310)
T 3mv2_B 153 STASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL---SQTFPTWKTQLG--LLN--LHLQQR 225 (310)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH---HTTSCSHHHHHH--HHH--HHHHHT
T ss_pred HHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH---HHhCCCcccHHH--HHH--HHHHcC
Confidence 999999998876543 11122222222222344444 666666555553 444455433221 122 688999
Q ss_pred CHHHHHHHHHhcc---ccCCcCc--cCCHhHHHHHHHHHHHhhC
Q 016653 189 NFKKAASLFLDSI---STFTTYE--LFPYDTFIFYTVLTSIISL 227 (385)
Q Consensus 189 ~~~~Aa~~f~e~~---~t~~~~e--~~~~~~~~~Y~~l~al~s~ 227 (385)
+|.+|-+.+-... +.+..-+ ...-.+.+.-++.|+....
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lg 269 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQG 269 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhC
Confidence 9999988874322 2221111 1123466666666666554
No 209
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=80.75 E-value=2.6 Score=31.49 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 016653 68 SMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVT 123 (385)
Q Consensus 68 ~~~~~~~~~l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~ 123 (385)
.+.++.++=+..+++.|+..+.-.--.++..++++=|++|++.||+.+|+.++.-.
T Consensus 6 ~L~Eki~kYi~~l~eaL~~i~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 61 (86)
T 2oo2_A 6 ELRRETLKWLERIEERVKEIEGDEGFMRNIEAYISDSRYFLEKGDLVRAFECVVWA 61 (86)
T ss_dssp HHHHHHHHHHHHHHHHGGGEEECHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444555555566555544321112334555888899999999999999987643
No 210
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=79.09 E-value=7.7 Score=36.91 Aligned_cols=68 Identities=9% Similarity=-0.118 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---ch----hHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VG----QKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~----~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
...++..+|..|+..|++++|.++|.++.+.+.. .. ..+....++..+.+..++++.+.....+|-..
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 3456889999999999999999999988755421 11 12222333444444456788888888877654
No 211
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=78.98 E-value=6.6 Score=32.12 Aligned_cols=64 Identities=16% Similarity=0.046 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAK 161 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~ 161 (385)
..+++.+|..+...|++++|.+.|.++.....+.. .......+..+....|+++.+.....++-
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQ-DGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTT-TTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccC-hHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 46789999999999999999999998876643321 12344555666667788877776666543
No 212
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=78.29 E-value=8.3 Score=28.46 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEec
Q 016653 294 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK 345 (385)
Q Consensus 294 ~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~ 345 (385)
..|.+++..+ .....++...+|+.+|+|...+-..|..|...|-+..+-+.
T Consensus 16 ~~~~~iL~~L-~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 16 PVRLGIMIFL-LPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVI 66 (100)
T ss_dssp HHHHHHHHHH-HHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred hHHHHHHHHH-HhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 3344444333 22467999999999999999999999999999999876644
No 213
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=78.21 E-value=7.3 Score=40.12 Aligned_cols=95 Identities=18% Similarity=0.205 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
..+++.+|..|.+.|++++|.+.|.++.+.... ..+..+..-.+....|+++.+...+.+|-..-- .++. .
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~----~ 503 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW---RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFP--GELA----P 503 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCSH----H
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChH----H
Confidence 568999999999999999999999998865432 245667777788888999999999998877521 1221 2
Q ss_pred hHHHHHhccccCCHHHHHHHHHhcc
Q 016653 177 KVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 177 ~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
....|..+...|+|.+ ...|-.++
T Consensus 504 ~~~lg~~~~~~g~~~~-~~~~~~al 527 (681)
T 2pzi_A 504 KLALAATAELAGNTDE-HKFYQTVW 527 (681)
T ss_dssp HHHHHHHHHHHTCCCT-TCHHHHHH
T ss_pred HHHHHHHHHHcCChHH-HHHHHHHH
Confidence 2345667778888888 77776654
No 214
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=77.66 E-value=14 Score=41.67 Aligned_cols=60 Identities=10% Similarity=0.015 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
-..+++.+|+.+.+.|++.+|.++|.+. .-.+.+..++..+...|+|+.+..++.+|+..
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3678999999999999999999999765 22456667888888889999999999887754
No 215
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=77.11 E-value=4.8 Score=35.81 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=55.5
Q ss_pred HhHHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEE
Q 016653 286 PHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 352 (385)
Q Consensus 286 ~h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~ 352 (385)
.....+++.||..++...+.|=..++...||+.||||..-+-+-|..|-..|-+.- -+..|+...
T Consensus 26 s~~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~--~~~~G~~V~ 90 (237)
T 3c7j_A 26 LARTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRV--ETHKGAVVA 90 (237)
T ss_dssp GHHHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred ccHHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCceEEe
Confidence 44566899999999999999999999999999999999999999999999998753 345566543
No 216
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=76.51 E-value=22 Score=27.82 Aligned_cols=70 Identities=13% Similarity=0.174 Sum_probs=52.1
Q ss_pred ccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecC--CCEEEEcCCCchhHHHHHHHHhhHHHHHHHHHh
Q 016653 310 VTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKV--AGVLETNRPDAKNALYQATIKQGDFLLNRIQKL 379 (385)
Q Consensus 310 I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~--~giv~~~~~d~~~~~y~~~i~~g~~l~~r~q~l 379 (385)
++...||+.+|+|...+-+-|..|...|-+.-.-+.. .|......+.+....++.+.+..+.+.+++...
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~ 114 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQSWADRLGQE 114 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999997654443 233334444446677777777766666666543
No 217
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=76.36 E-value=1.1e+02 Score=34.75 Aligned_cols=54 Identities=7% Similarity=-0.197 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~ 162 (385)
..+..+|+.+++.|+|++|..+|.++ +.+..+.++.+..|++..|.+...||..
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA-----------~ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh-----------hHHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 35678999999999999999999874 4556677777777999988888888755
No 218
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=76.02 E-value=18 Score=35.05 Aligned_cols=93 Identities=17% Similarity=0.030 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCC
Q 016653 97 REAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGG 168 (385)
Q Consensus 97 r~a~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~----~~~~~~~~~~i~ka~~~~~~~~ 168 (385)
..+++.||.+|.. .+|+++|.++|.+..+. + ..+....+-.+... .+|+..+.....++-.. +
T Consensus 75 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~-~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~ 145 (490)
T 2xm6_A 75 TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----G-LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ----G 145 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C
Confidence 4678888998888 88999999888887653 1 23444444445555 56888888888876442 3
Q ss_pred ChhhhhhhhHHHHHhccc----cCCHHHHHHHHHhccc
Q 016653 169 DWERKNRLKVYEGLYCMS----TRNFKKAASLFLDSIS 202 (385)
Q Consensus 169 ~~~~~~~l~~~~gl~~l~----~r~~~~Aa~~f~e~~~ 202 (385)
++.-. ..-|..+.. .+++.+|..+|-.+..
T Consensus 146 ~~~a~----~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 146 RDSGQ----QSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp CHHHH----HHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHHH----HHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 33221 224445554 7899999999887653
No 219
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=75.73 E-value=25 Score=33.93 Aligned_cols=92 Identities=15% Similarity=0.075 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCC
Q 016653 97 REAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGG 168 (385)
Q Consensus 97 r~a~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~----~~~~~~~~~~i~ka~~~~~~~~ 168 (385)
..+++.||.+|.. .+|+++|.++|.+..+.. ..+....+-.+... .+|+..+.....++-.. +
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~ 181 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----G 181 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C
Confidence 4678999999999 899999999999876541 24555555555555 67899998888887543 3
Q ss_pred ChhhhhhhhHHHHHhccc----cCCHHHHHHHHHhcc
Q 016653 169 DWERKNRLKVYEGLYCMS----TRNFKKAASLFLDSI 201 (385)
Q Consensus 169 ~~~~~~~l~~~~gl~~l~----~r~~~~Aa~~f~e~~ 201 (385)
++.-. ..-|..+.. .+++.+|...|-.+.
T Consensus 182 ~~~a~----~~Lg~~y~~g~g~~~~~~~A~~~~~~a~ 214 (490)
T 2xm6_A 182 NVWSC----NQLGYMYSRGLGVERNDAISAQWYRKSA 214 (490)
T ss_dssp CHHHH----HHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred CHHHH----HHHHHHHhcCCCCCcCHHHHHHHHHHHH
Confidence 43322 234555555 899999999998864
No 220
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=75.71 E-value=9 Score=28.63 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHh----hCH--HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 016653 71 TKIEDELKKLDDRIADAEEN----LGE--SEVREAHLAKSLFYIQIGDKEKALEQLKVT 123 (385)
Q Consensus 71 ~~~~~~l~~Le~~l~~~~~n----~~~--~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~ 123 (385)
++.++-...+++.|+..+.- ..+ .++..++++=|++|++.||+.+|+.++.-.
T Consensus 7 Eki~kYi~~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~Da~~fl~kGD~v~Ala~isYa 65 (87)
T 2pmr_A 7 ERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEKGDHITSFGCITYA 65 (87)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444455555555555421 111 234455888899999999999999988654
No 221
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=75.69 E-value=7.4 Score=28.35 Aligned_cols=34 Identities=15% Similarity=0.151 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccc
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAV 130 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~ 130 (385)
..++..+|..|...|++++|.+.+.++.+...+.
T Consensus 38 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 38 PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 4678899999999999999999999998776443
No 222
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=75.52 E-value=4.7 Score=29.81 Aligned_cols=45 Identities=4% Similarity=0.030 Sum_probs=37.3
Q ss_pred HHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccce
Q 016653 295 VRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 295 iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a 341 (385)
.+.++ .++++... ++...||+.||+|...+-+.|-.|-.+|-|..
T Consensus 18 ~~~~I-L~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 18 IVCEA-IKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHH-HHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHH-HHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 33433 36777655 99999999999999999999999999998855
No 223
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=75.37 E-value=12 Score=29.52 Aligned_cols=61 Identities=15% Similarity=-0.008 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHH----hCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHH
Q 016653 97 REAHLAKSLFYIQ----IGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKS 162 (385)
Q Consensus 97 r~a~~~la~~~~~----~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~----~~~~~~~~~~i~ka~~ 162 (385)
..+++.||.+|.. .+|+++|.++|.+.-+.- ..+.+..+-.+... .+|+..+...+.+|-.
T Consensus 57 ~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 57 GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 4567777777777 677777777777765431 12334444444444 4566666666665544
No 224
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=74.85 E-value=12 Score=27.61 Aligned_cols=52 Identities=13% Similarity=0.232 Sum_probs=41.0
Q ss_pred HHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecC
Q 016653 294 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKV 346 (385)
Q Consensus 294 ~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~ 346 (385)
..|.+++ .++.....++...+|+.+|+|...+-+.|..|...|-+...-|..
T Consensus 24 ~~~~~il-~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 24 PKRLLIL-CMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp HHHHHHH-HHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred hHHHHHH-HHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 3444444 344445579999999999999999999999999999997765544
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=74.84 E-value=6.1 Score=31.74 Aligned_cols=40 Identities=18% Similarity=0.095 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhH
Q 016653 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQK 133 (385)
Q Consensus 94 ~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~ 133 (385)
+.-|+.+|-||-.+++.|+|++|.++...+.+.-+...+.
T Consensus 71 ~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 71 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 4679999999999999999999999999887765544443
No 226
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=74.65 E-value=22 Score=26.24 Aligned_cols=49 Identities=20% Similarity=0.270 Sum_probs=38.4
Q ss_pred HHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCC
Q 016653 299 VYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVA 347 (385)
Q Consensus 299 ~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~ 347 (385)
++..++.....++...+|+.+|+|..-+-+.|..|...|-+.-.-+..+
T Consensus 26 ~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 26 VLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 3444444456799999999999999999999999999999977655443
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=74.52 E-value=9.3 Score=28.39 Aligned_cols=32 Identities=6% Similarity=-0.208 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTV 128 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~ 128 (385)
.+++.-+|..+++.|+|++|.+++.++.+...
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 67888899999999999999999999876543
No 228
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=74.46 E-value=16 Score=35.71 Aligned_cols=88 Identities=7% Similarity=-0.107 Sum_probs=52.2
Q ss_pred HHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhHHHHHhcccc
Q 016653 108 IQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMST 187 (385)
Q Consensus 108 ~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~ 187 (385)
...|++++|.++|.+..+.+.. ..++....+.+....|+...+...+.++-... ..+|+....+-..-+-+....
T Consensus 402 ~~~~~~~~A~~~~e~al~~~p~---~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~--~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 402 YCSKDKSVAFKIFELGLKKYGD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHTCCHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC--CSCGGGCHHHHHHHHHHHHHS
T ss_pred HHcCChhHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHc
Confidence 3578888888888888776642 24566677777777788888888888876542 123332222222222223445
Q ss_pred CCHHHHHHHHHhc
Q 016653 188 RNFKKAASLFLDS 200 (385)
Q Consensus 188 r~~~~Aa~~f~e~ 200 (385)
|+...+...+-.+
T Consensus 477 G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 477 GDLASILKVEKRR 489 (530)
T ss_dssp SCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 6766665554333
No 229
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=74.22 E-value=4.7 Score=29.60 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=41.2
Q ss_pred HHHHHHHHHhccccccccHHHHHHHhCCChH-HHHHHHHHHHhCCccce
Q 016653 294 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVE-FIDVELSRFIAAGKLHC 341 (385)
Q Consensus 294 ~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~-~iE~~L~~lI~~g~l~a 341 (385)
..+.+++ +|+.-....+...||+.||++.. .+-+.|..|-.+|-+..
T Consensus 11 ~~~~~IL-~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 11 EIKEKIC-DYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp HHHHHHH-HHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred hHHHHHH-HHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 4455554 88888899999999999999999 99999999999999873
No 230
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=74.15 E-value=12 Score=36.80 Aligned_cols=97 Identities=9% Similarity=-0.088 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRL 176 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l 176 (385)
...+..+|.++.+.|++++|.++|.++.+.... ..........++..-.|+++.+...+.+|-.... ..+
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~--~~~------ 390 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRH------ 390 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT--CCT------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC--Cch------
Confidence 456889999999999999999999998875322 1123445555555556778888777777755321 111
Q ss_pred hHHHHHh---ccccCCHHHHHHHHHhcccc
Q 016653 177 KVYEGLY---CMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 177 ~~~~gl~---~l~~r~~~~Aa~~f~e~~~t 203 (385)
..+-+.. ....|++..|...|-.++..
T Consensus 391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 391 HVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 1222222 22589999999998877654
No 231
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=73.80 E-value=5.3 Score=33.07 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=39.4
Q ss_pred HHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc---eEEecC
Q 016653 300 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 346 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~---akID~~ 346 (385)
+..++.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 15 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 15 ILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 44455556789999999999999999999999999999875 567755
No 232
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=73.48 E-value=5.8 Score=32.12 Aligned_cols=47 Identities=6% Similarity=0.183 Sum_probs=39.6
Q ss_pred HHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc---eEEecC
Q 016653 300 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 346 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~---akID~~ 346 (385)
+...+....+++...+|+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 10 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 44455556789999999999999999999999999999885 467765
No 233
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=73.10 E-value=4.8 Score=32.78 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=39.8
Q ss_pred HHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc---eEEecC
Q 016653 300 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 346 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~---akID~~ 346 (385)
+...+....+++.+.+|+.+|+|...+-+.+.+|...|-+. +.+|..
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 44555667899999999999999999999999999999874 457765
No 234
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=72.73 E-value=28 Score=29.22 Aligned_cols=34 Identities=3% Similarity=-0.017 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 016653 94 SEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT 127 (385)
Q Consensus 94 ~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~ 127 (385)
+.--.++.-+|+.++..|+|..|...|.++...+
T Consensus 60 ~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 60 PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3445668999999999999999999999976554
No 235
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=72.56 E-value=2 Score=33.09 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=46.4
Q ss_pred hhHhHhHHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceE
Q 016653 282 RYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 342 (385)
Q Consensus 282 ~~l~~h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ak 342 (385)
+.+..-+..++...|.+++.....|=..++...||+.||+|...+-+-|..|...|-+..+
T Consensus 6 ~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 6 DLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp THHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 3333444444445566666666666657999999999999999999999999999998764
No 236
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=72.40 E-value=13 Score=27.55 Aligned_cols=55 Identities=24% Similarity=0.197 Sum_probs=39.5
Q ss_pred hHhHhHHHHHHHHHHHHHHHhccccc-cccHHHHHHHhCCChHH-HHHHHHHHHhCCccc
Q 016653 283 YLYPHFRYYMREVRTVVYSQFLESYK-SVTIEAMAKAFGVTVEF-IDVELSRFIAAGKLH 340 (385)
Q Consensus 283 ~l~~h~~~l~~~iR~~~~~qy~~pY~-~I~l~~mA~~fg~s~~~-iE~~L~~lI~~g~l~ 340 (385)
.+......+.+.+.. ..++.... .++.+.+|+.+|++..- +-+.|.+|...|-+.
T Consensus 6 ~l~~~~g~~~~~l~~---L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 6 TLRLQFGHLIRILPT---LLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp GGGSBHHHHHHHHHH---HHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HHHHHhhhHHHHHHH---HHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 343333444444433 23333344 69999999999999999 999999999999887
No 237
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=72.19 E-value=11 Score=31.68 Aligned_cols=46 Identities=11% Similarity=0.216 Sum_probs=38.9
Q ss_pred HHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc---eEEecC
Q 016653 301 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 346 (385)
Q Consensus 301 ~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~---akID~~ 346 (385)
...+..-.+++...||+.+|+|+..+-+.|.+|...|-|. +.+|+.
T Consensus 23 L~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 23 LRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 4444556789999999999999999999999999999884 567765
No 238
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=72.17 E-value=13 Score=27.64 Aligned_cols=59 Identities=7% Similarity=0.151 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEE
Q 016653 291 YMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLE 351 (385)
Q Consensus 291 l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~ 351 (385)
+-+..|.+++... .- ..++...+|+.+|+|...+-+.|..|...|-+..+-+.......
T Consensus 20 l~~~~r~~Il~~L-~~-~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~ 78 (98)
T 3jth_A 20 MANERRLQILCML-HN-QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYT 78 (98)
T ss_dssp HCSHHHHHHHHHT-TT-SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEE
T ss_pred cCCHHHHHHHHHH-hc-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEE
Confidence 3344555555444 33 78999999999999999999999999999999877554433333
No 239
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=72.14 E-value=11 Score=29.18 Aligned_cols=56 Identities=14% Similarity=0.223 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEec
Q 016653 288 FRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK 345 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~ 345 (385)
...+-+..|.+++..+.. ..++.+.||+.+|+|...+-+.|..|...|-+..+-+.
T Consensus 12 ~~al~~~~R~~Il~~L~~--~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 12 FQALADPTRRAVLGRLSR--GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQG 67 (118)
T ss_dssp HHHHTSHHHHHHHHHHHT--CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHhCCHHHHHHHHHHHh--CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecC
Confidence 344555567766655542 56899999999999999999999999999999887774
No 240
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=71.85 E-value=5.4 Score=32.58 Aligned_cols=47 Identities=23% Similarity=0.324 Sum_probs=39.9
Q ss_pred HHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc---eEEecC
Q 016653 300 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 346 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~---akID~~ 346 (385)
+...+....+++...||+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 34455556789999999999999999999999999999875 478876
No 241
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=71.22 E-value=9.9 Score=27.91 Aligned_cols=31 Identities=6% Similarity=0.075 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKT 127 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~ 127 (385)
..+++.+|..|...|++++|.+.|.+..+..
T Consensus 41 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 41 VGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3579999999999999999999999887654
No 242
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=70.47 E-value=2 Score=34.17 Aligned_cols=54 Identities=17% Similarity=0.204 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEe
Q 016653 291 YMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 344 (385)
Q Consensus 291 l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID 344 (385)
=.++.|..++.|++.|=.+=.|++++=.=-=-...||..|..|...|+|.++||
T Consensus 34 ~~ee~r~~iL~qiLtpeAreRL~rI~lVKPEkA~~VE~~LI~lAq~Gqi~~kIt 87 (118)
T 2cru_A 34 REAEMRNSILAQVLDQSARARLSNLALVKPEKTKAVENYLIQMARYGQLSEKVS 87 (118)
T ss_dssp HHHHHHHHHHHHHBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCCSCBC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 345778888999999988888888775221123479999999999999999886
No 243
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=70.30 E-value=10 Score=28.19 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceE
Q 016653 290 YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 342 (385)
Q Consensus 290 ~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ak 342 (385)
.+.+..|.+++..+ ...++...+|+.+|+|...+-+.|..|...|-+..+
T Consensus 27 ~l~~~~r~~Il~~L---~~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 27 AVTNPVRRKILRML---DKGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HHSCHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33344555555444 356899999999999999999999999999988653
No 244
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=70.04 E-value=13 Score=30.94 Aligned_cols=70 Identities=10% Similarity=0.118 Sum_probs=47.1
Q ss_pred hHhHhHHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 283 YLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 283 ~l~~h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
-++...++=++.+.. ..--.+=..++.+.||+.+|+|+..+++-+..|-..|-+..+=....|..-...|
T Consensus 21 ~lS~~~~yAlr~L~~---LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 21 KITTKGRYGLTITLE---LAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp CCCHHHHHHHHHHHH---HHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred eCchHHHHHHHHHHH---HHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 344555554444443 2222223469999999999999999999999999999887764443444444433
No 245
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=69.65 E-value=15 Score=25.42 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKT 127 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~ 127 (385)
..++..+|..|...|++++|.+++.++.+..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3578899999999999999999999987654
No 246
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=69.45 E-value=6.2 Score=34.02 Aligned_cols=46 Identities=15% Similarity=0.216 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCC
Q 016653 292 MREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAG 337 (385)
Q Consensus 292 ~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g 337 (385)
..+=|.+.+.++++....|+.+.||+.||+|++-+-+.|.+|=.-+
T Consensus 9 ~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 9 KKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 3456888899999999999999999999999999999998774443
No 247
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=68.81 E-value=7.7 Score=38.13 Aligned_cols=110 Identities=10% Similarity=0.012 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHH--h-------cCCC
Q 016653 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLF--E-------EGGD 169 (385)
Q Consensus 99 a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~--~-------~~~~ 169 (385)
++..+|+.+++.|.|++|..+|.++ +-+..+..+.+..|++..+.+...|+...- . ..++
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a-----------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~e 192 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV-----------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE 192 (449)
T ss_dssp -------------CTTTHHHHHHHT-----------TCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-----------hhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCc
Confidence 6777777777777777777777654 223333344444455555555555443210 0 0112
Q ss_pred hhhhhh----h----hHHHH--HhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHHhh
Q 016653 170 WERKNR----L----KVYEG--LYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIIS 226 (385)
Q Consensus 170 ~~~~~~----l----~~~~g--l~~l~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~~~~Y~~l~al~s 226 (385)
|+.... | ..... -.+...|.|.+|.++|-.++.. ...+...|+.|.-+.+
T Consensus 193 f~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l-------e~ah~~~ftel~il~~ 252 (449)
T 1b89_A 193 FRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-------ERAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC-------cHHHHHHHHHHHHHHH
Confidence 211100 0 00111 1345678888888888776532 1234555665655555
No 248
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=68.54 E-value=19 Score=29.18 Aligned_cols=42 Identities=17% Similarity=0.032 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHH
Q 016653 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKM 134 (385)
Q Consensus 93 ~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~i 134 (385)
.+..|+.++-||--+++.|||++|.++...+.+.-.+..+..
T Consensus 74 ~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 74 ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 345799999999999999999999999999887766555543
No 249
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=67.93 E-value=12 Score=30.31 Aligned_cols=57 Identities=19% Similarity=0.132 Sum_probs=43.6
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccce--EEecCCCEEEEcCCCchhHHHHHHH
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC--KIDKVAGVLETNRPDAKNALYQATI 366 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a--kID~~~giv~~~~~d~~~~~y~~~i 366 (385)
..-.+.+.+|+.+|+|+.++.+.|.+||..|-|.= +.|..++......-. ..|++..
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~---pL~ekL~ 107 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQ---PLWGKLY 107 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECH---HHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHH---HHHHHHH
Confidence 35579999999999999999999999999998864 667765555555332 3455543
No 250
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=67.82 E-value=8.9 Score=29.36 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecC
Q 016653 293 REVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKV 346 (385)
Q Consensus 293 ~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~ 346 (385)
...|.+++..+.+ ..++...+|+.+|+|...+-+.|..|...|-+..+-|..
T Consensus 24 ~~~r~~IL~~L~~--~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr 75 (108)
T 2kko_A 24 NGRRLQILDLLAQ--GERAVEAIATATGMNLTTASANLQALKSGGLVEARREGT 75 (108)
T ss_dssp TSTTHHHHHHHTT--CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETT
T ss_pred CHHHHHHHHHHHc--CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3445555544432 578999999999999999999999999999998765543
No 251
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=66.98 E-value=2.7 Score=33.59 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 288 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
...+++.++..+...-+.|=..+ +...||+.||+|..-+-+-+..|..+|-|..+ +..|+....
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~~ 77 (126)
T 3ic7_A 13 YLQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVAS 77 (126)
T ss_dssp TTHHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEECT
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEcc
Confidence 35788889998899999999999 99999999999999999999999999987543 566766654
No 252
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=66.61 E-value=11 Score=32.75 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 287 HFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 287 h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
-.+.+++.||..++..-+.|=..+.-..||+.||||..-+-+-|..|-.+|-+.. -+..|+.+..
T Consensus 17 ~~~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~--~~~~G~~V~~ 81 (222)
T 3ihu_A 17 ASDTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDL--QRHRGAVIRR 81 (222)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CSTTCEEECC
T ss_pred HHHHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--ecCCCeEEec
Confidence 3467899999999999999999999999999999999999999999999998854 3556776654
No 253
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=66.59 E-value=35 Score=25.06 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=45.7
Q ss_pred hccccccccHHHH----HHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCCCchhHHHHHHHHh
Q 016653 303 FLESYKSVTIEAM----AKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQ 368 (385)
Q Consensus 303 y~~pY~~I~l~~m----A~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~ 368 (385)
++.....++...+ |+.+|++...+-+.|.+|...|-+.-..|.....+..+ +.-...++.+.+.
T Consensus 16 ~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT--~~G~~~~~~~~~~ 83 (99)
T 1tbx_A 16 YLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLT--EKGKLFAISLKTA 83 (99)
T ss_dssp HHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC--HHHHHHHHHHHHH
T ss_pred HHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEEC--HHHHHHHHHHHHH
Confidence 3334567899999 99999999999999999999999988888744444443 2223344444443
No 254
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=66.56 E-value=16 Score=32.66 Aligned_cols=63 Identities=11% Similarity=0.162 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcC
Q 016653 287 HFRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 354 (385)
Q Consensus 287 h~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~ 354 (385)
-...+.+.++.++. . +.|=..+ +-..||+.||+|..-+-+-|..|..+|-|.- +..|+.....
T Consensus 15 ~y~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~~ 78 (248)
T 3f8m_A 15 KHQVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVARP 78 (248)
T ss_dssp HHHHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECCC
T ss_pred HHHHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEccC
Confidence 34677888888887 6 8999999 9999999999999999999999999998855 6777776553
No 255
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=66.25 E-value=8.4 Score=31.90 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=41.5
Q ss_pred HHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCcc---ceEEecC
Q 016653 299 VYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL---HCKIDKV 346 (385)
Q Consensus 299 ~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l---~akID~~ 346 (385)
.+.+.++.-.+++...||+.+|+|+..+-+.|.+|..+|-| .|.+|..
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 35666676788999999999999999999999999999976 4678865
No 256
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=66.24 E-value=59 Score=27.37 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=35.5
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
-.++.+.||+.+|+|.+.+-+.+.+|-.+|-|. ...|.|...++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 220 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH----LDGREISILDR 220 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE----ESSSCEEESCS
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE----ecCCEEEEeCH
Confidence 457889999999999999999999999988774 34455666544
No 257
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=66.15 E-value=17 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.195 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc
Q 016653 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVA 129 (385)
Q Consensus 99 a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~ 129 (385)
+++.+|..|...|++++|.++|.++......
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 8899999999999999999999998876543
No 258
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=66.09 E-value=5.2 Score=30.31 Aligned_cols=35 Identities=29% Similarity=0.521 Sum_probs=28.6
Q ss_pred HHHHHHHhccccccccHHHHHHHhCCChHHHHHHHH
Q 016653 296 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELS 331 (385)
Q Consensus 296 R~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~ 331 (385)
|...+.+|+.... +++..+|+.+|+|..-+-+.|.
T Consensus 8 R~~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L~ 42 (93)
T 2l0k_A 8 RTIKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDLT 42 (93)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHHc
Confidence 5566777777766 9999999999999998877764
No 259
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=65.71 E-value=14 Score=26.69 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=37.8
Q ss_pred HHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccce
Q 016653 300 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a 341 (385)
....+.+=...+...+|..||++-..+-+.|-.|=..|.+..
T Consensus 20 ~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~ 61 (75)
T 1sfu_A 20 EVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKM 61 (75)
T ss_dssp HHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEec
Confidence 455888888899999999999999999999999999998865
No 260
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=65.68 E-value=11 Score=33.41 Aligned_cols=66 Identities=9% Similarity=0.136 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 288 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
...+.+.++.++...-+.|-..+ +-..||+.||+|..-+-+-|..|..+|-|..+ +..|+.....+
T Consensus 11 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~~ 77 (236)
T 3edp_A 11 FEVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQPKL 77 (236)
T ss_dssp HHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCCC
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEccCc
Confidence 45678888888888888999999 89999999999999999999999999987553 55677766543
No 261
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=65.15 E-value=14 Score=32.66 Aligned_cols=64 Identities=9% Similarity=0.064 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 288 FRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
.+.+++.||..++..-+.|=..++-..||+.||||..-|-+-|..|-.+|-+.. -+..|+.+..
T Consensus 30 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~--~~~~G~~V~~ 93 (239)
T 2hs5_A 30 TTRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAH--ELNRGVFVRV 93 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCeeEEeC
Confidence 467889999999999999999999999999999999999999999999998854 4556766554
No 262
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=65.14 E-value=29 Score=30.95 Aligned_cols=63 Identities=14% Similarity=0.014 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka 160 (385)
..+++.+|..|...|++++|.+.|.++...-.+.. ..+....+..+.-..|+.+.+.....++
T Consensus 219 ~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~-~~~a~~~l~~~~~~~g~~~~a~~~~r~a 281 (287)
T 3qou_A 219 AALATQLALQLHQVGRNEEALELLFGHLRXDLTAA-DGQTRXTFQEILAALGTGDALASXYRRQ 281 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG-GGHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-cchHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 45688888888888888888888888765543221 1233444455555556666555544443
No 263
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=65.10 E-value=60 Score=31.95 Aligned_cols=163 Identities=10% Similarity=0.011 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHH--HhHHHHHHHH----HhcCCChhhh
Q 016653 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLI--SKSIDKAKSL----FEEGGDWERK 173 (385)
Q Consensus 100 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~--~~~i~ka~~~----~~~~~~~~~~ 173 (385)
+...-+.+.+.|+.++|.+.|.++.+....++.. .+-.+|..+-..+.+... ...+.+|..+ ...+..|+..
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~--tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQY--HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHH--HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3445577899999999999999998765444322 122223333222221110 0122333333 2334444432
Q ss_pred hhhhHHHHH--hccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHHhh-CChhHHHhhccCChHHHHHhcCcc
Q 016653 174 NRLKVYEGL--YCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIIS-LDRVSLKQKVVDAPEILTVIGKIP 250 (385)
Q Consensus 174 ~~l~~~~gl--~~l~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~~~~Y~~l~al~s-~~R~~lk~~v~~~~e~~~~l~~~p 250 (385)
.|..+ .+...|++..|.+.|-+.... + + .++...|..+..-.+ ..+-+--..+++ +... .+-.|
T Consensus 107 ----tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g-~-~Pd~~tyn~lI~~~~~~g~~~~A~~l~~--~M~~-~G~~P 173 (501)
T 4g26_A 107 ----TFTNGARLAVAKDDPEMAFDMVKQMKAF----G-I-QPRLRSYGPALFGFCRKGDADKAYEVDA--HMVE-SEVVP 173 (501)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHT----T-C-CCCHHHHHHHHHHHHHTTCHHHHHHHHH--HHHH-TTCCC
T ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-C-CCccceehHHHHHHHHCCCHHHHHHHHH--HHHh-cCCCC
Confidence 34444 345688999999998876421 1 1 235555655444333 222111111221 1111 11233
Q ss_pred ---hHHHHHHHHHh-ccHHHHHHHHHHhHHH
Q 016653 251 ---YLSEFLNSLYD-CQYKSFFSAFAGLTEQ 277 (385)
Q Consensus 251 ---~~~~li~~f~~-~~y~~~~~~L~~~~~~ 277 (385)
.+..+|.++.. .++..+++.|.+.++.
T Consensus 174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 174 EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 36788888864 5899999999888654
No 264
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=65.04 E-value=16 Score=29.44 Aligned_cols=47 Identities=9% Similarity=0.224 Sum_probs=39.7
Q ss_pred HHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccce---EEecC
Q 016653 300 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC---KIDKV 346 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a---kID~~ 346 (385)
+...+.....++...+|+.+|+|+..+-+.|.+|...|-|.. .+|+.
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 345666667899999999999999999999999999998853 67764
No 265
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=64.98 E-value=50 Score=27.19 Aligned_cols=90 Identities=13% Similarity=0.126 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHhhhccchhHHHh
Q 016653 60 EMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIG---DKEKALEQLKVTESKTVAVGQKMDL 136 (385)
Q Consensus 60 ~~D~~~~~~~~~~~~~~l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~G---d~~~A~~~~~~~~~~~~~~~~~id~ 136 (385)
++.++.+...++...++++ .+. .-.++.+.+|--+.+.+ +.+++.+.+..+.+.. ++...-|.
T Consensus 8 ~l~~~~l~~~~~~y~~e~~----------~~~---~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~ 73 (152)
T 1pc2_A 8 LVSVEDLLKFEKKFQSEKA----------AGS---VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDY 73 (152)
T ss_dssp SCCHHHHHHHHHHHHHHHH----------TTC---CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHc----------cCC---CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHH
Confidence 4566777666665544432 111 12577889999999988 7779999999887643 24456677
Q ss_pred HHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 137 VFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 137 ~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
...+--.+...+|++.+..+++++-+.
T Consensus 74 lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 74 VFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 777766777889999999888876553
No 266
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=64.98 E-value=1.2 Score=32.94 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=36.7
Q ss_pred HHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEe
Q 016653 296 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 344 (385)
Q Consensus 296 R~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID 344 (385)
|..++.|++.|=.+=.|++++=.=-=-...+|..|.+|...|+|.++||
T Consensus 7 r~~iL~qiL~~eAreRL~rI~lvKPe~A~~VE~~Li~lAq~Gqi~~ki~ 55 (81)
T 2fh0_A 7 VGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 55 (81)
T ss_dssp SSHHHHTTBCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHTCCSCCBC
T ss_pred HHHHHHHHcCHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 4556788888877777777765221123479999999999999999886
No 267
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=64.93 E-value=26 Score=26.40 Aligned_cols=50 Identities=6% Similarity=0.086 Sum_probs=39.0
Q ss_pred HHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEec
Q 016653 294 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK 345 (385)
Q Consensus 294 ~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~ 345 (385)
..|.+++..+. ...++...+|+.+|+|...+-+.|..|...|-+..+-+.
T Consensus 26 ~~r~~IL~~L~--~~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 26 YNRIRIMELLS--VSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQG 75 (106)
T ss_dssp HHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 44444444333 356899999999999999999999999999999776553
No 268
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=64.77 E-value=7.9 Score=32.54 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=39.1
Q ss_pred HHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc---eEEecC
Q 016653 300 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 346 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~---akID~~ 346 (385)
+.+.+....+++...||+.+|+|+..+-+.|.+|...|-|. +.+|..
T Consensus 32 IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~ 81 (171)
T 2e1c_A 32 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 81 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHH
Confidence 34445556789999999999999999999999999999874 567764
No 269
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=64.67 E-value=10 Score=32.94 Aligned_cols=64 Identities=9% Similarity=0.198 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 288 FRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
.+.+++.||..++..-+.|=..++-..||+.||||..-+-+-|..|-.+|-+..+ +..|+.+..
T Consensus 14 ~~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 77 (218)
T 3sxy_A 14 RTKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVTD 77 (218)
T ss_dssp CHHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEcC
Confidence 4578899999999999999999999999999999999999999999999988554 556766654
No 270
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=64.15 E-value=13 Score=33.02 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcC
Q 016653 287 HFRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 354 (385)
Q Consensus 287 h~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~ 354 (385)
-...+.+.++.++...-+.|=..+ +...||+.||+|..-+-+-|..|..+|-|..+ +..|+.....
T Consensus 11 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~ 77 (243)
T 2wv0_A 11 IYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL--KGRGTFVSKP 77 (243)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEECCC
T ss_pred HHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe--CCCeEEEeCC
Confidence 346778888888888888999999 89999999999999999999999999988643 5557766543
No 271
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=64.13 E-value=27 Score=25.95 Aligned_cols=62 Identities=10% Similarity=0.176 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 290 YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 290 ~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
.+-+..|.+++..... ...+...+|+.+|+|...+-+.|..|...|-+..+-+........+
T Consensus 19 ~l~~~~r~~Il~~L~~--~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~ 80 (102)
T 3pqk_A 19 TLSHPVRLMLVCTLVE--GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLT 80 (102)
T ss_dssp HHCSHHHHHHHHHHHT--CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEEC
T ss_pred HcCCHHHHHHHHHHHh--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEC
Confidence 3344455555544433 4589999999999999999999999999999987766554444444
No 272
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=64.06 E-value=13 Score=32.46 Aligned_cols=63 Identities=11% Similarity=0.088 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEE
Q 016653 288 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 352 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~ 352 (385)
.+.+++.||..+...-+.|=..+ +-..||+.||||..-+-+-|..|..+|-+.- -+..|+.+.
T Consensus 9 ~~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~--~~g~G~~V~ 72 (239)
T 1hw1_A 9 AGFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--ecCCCcEee
Confidence 46788899999999999999999 8999999999999999999999999998754 345576664
No 273
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=63.63 E-value=29 Score=29.09 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=37.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
...++.+.||+.+|++.+.+-+.+.+|-.+|-|. ...|.|...++
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 205 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVR----LGPGTVEVREA 205 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 4678999999999999999999999999998774 34577777643
No 274
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=63.47 E-value=24 Score=29.66 Aligned_cols=69 Identities=12% Similarity=-0.019 Sum_probs=55.8
Q ss_pred HHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCC---ChhhhhhhhHHHHHhccccCCHHHHHHHHHhcc
Q 016653 133 KMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGG---DWERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 133 ~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~---~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
.+-.++.+++..+..+-|+.|.-..+.+-+..+... .|..+....++-|-.+..+|+|..|...|-.++
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344667888888889999999988888888765433 367788889999999999999999999998864
No 275
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=63.46 E-value=18 Score=29.38 Aligned_cols=35 Identities=9% Similarity=0.243 Sum_probs=32.2
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceE
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 342 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ak 342 (385)
..++.+.||+.+|+|+..+++-+..|-..|-+..+
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~ 61 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSV 61 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEec
Confidence 46999999999999999999999999999987764
No 276
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=63.01 E-value=18 Score=24.25 Aligned_cols=51 Identities=14% Similarity=0.217 Sum_probs=39.2
Q ss_pred HHHHHHHHhccccccccHHHHHHHh-----CCChHHHHHHHHHHHhCCccceEEecCCCEE
Q 016653 295 VRTVVYSQFLESYKSVTIEAMAKAF-----GVTVEFIDVELSRFIAAGKLHCKIDKVAGVL 350 (385)
Q Consensus 295 iR~~~~~qy~~pY~~I~l~~mA~~f-----g~s~~~iE~~L~~lI~~g~l~akID~~~giv 350 (385)
-|...+..++.....++.+.+++.| ++|..-+-+.|..+ |.+ ++...+|..
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v--~~~~~~~~~ 60 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV--KVPTNNGSY 60 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE--EEEETTTEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE--EEecCCCce
Confidence 4666677777777889999999999 99999999999843 544 666666643
No 277
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=62.96 E-value=39 Score=28.61 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=29.4
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHHhCCccc
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 340 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ 340 (385)
.++-..||+.+|+|.+.+-+.+.+|..+|-|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 47899999999999999999999999998764
No 278
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=62.76 E-value=26 Score=25.19 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhH
Q 016653 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLV 137 (385)
Q Consensus 100 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~ 137 (385)
...+|+-+...|++++|..+++++..-|..+...+.++
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~ 57 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 57 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45789999999999999999999998998887766544
No 279
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=62.70 E-value=1.1e+02 Score=29.64 Aligned_cols=80 Identities=14% Similarity=0.030 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhh----ccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcC
Q 016653 92 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKT----VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEG 167 (385)
Q Consensus 92 ~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~----~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~ 167 (385)
-+.+-...+..-.++|...||+..|...+.+++... ..+..+..+....+++....++|..+-.+.-.+-......
T Consensus 172 ~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 172 EMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 344555668888999999999999999999876432 2345677888888999999999999988888777665544
Q ss_pred CChh
Q 016653 168 GDWE 171 (385)
Q Consensus 168 ~~~~ 171 (385)
+++.
T Consensus 252 ~d~~ 255 (445)
T 4b4t_P 252 SDEA 255 (445)
T ss_dssp SCHH
T ss_pred CCHH
Confidence 5554
No 280
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=62.68 E-value=50 Score=25.73 Aligned_cols=46 Identities=15% Similarity=0.099 Sum_probs=39.4
Q ss_pred HhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 302 QFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 302 qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
.++. ...++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 44 ~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 44 RATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp HHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 3344 678999999999999999999999999999999877766554
No 281
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=62.39 E-value=8.3 Score=30.77 Aligned_cols=41 Identities=15% Similarity=0.255 Sum_probs=35.4
Q ss_pred HHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc
Q 016653 300 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 340 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ 340 (385)
+...+.....++.+.||+.+|+|...+-+.|.+|...|-+.
T Consensus 9 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~ 49 (141)
T 1i1g_A 9 ILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIE 49 (141)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEe
Confidence 34455556789999999999999999999999999999874
No 282
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=61.70 E-value=32 Score=25.50 Aligned_cols=68 Identities=15% Similarity=0.081 Sum_probs=52.1
Q ss_pred HHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCCh-hhhhhhhHHHHHhccccCCHHHHHHHHHhcc
Q 016653 134 MDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDW-ERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 134 id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~-~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
.+.|+.+-+..+..++|.++...+.+|-........+ .....+-..-|..+...|++..|...+-.++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4678889999999999999999999998877542211 1233444567888889999999999887764
No 283
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=61.51 E-value=38 Score=26.40 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=40.2
Q ss_pred cccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC---EEEEc
Q 016653 305 ESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG---VLETN 353 (385)
Q Consensus 305 ~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g---iv~~~ 353 (385)
.....++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++ .+..+
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT 99 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLT 99 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEEC
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEEC
Confidence 35678999999999999999999999999999999776655443 45444
No 284
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=61.50 E-value=15 Score=33.28 Aligned_cols=66 Identities=12% Similarity=0.161 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcC
Q 016653 287 HFRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 354 (385)
Q Consensus 287 h~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~ 354 (385)
-...+++.++.++...-+.|=..+ +-..||+.||+|..-+-+-|..|..+|-|.. -+..|+.....
T Consensus 30 ~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~~ 96 (272)
T 3eet_A 30 AYLRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEG--RSGSGTYVRER 96 (272)
T ss_dssp HHHHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CCC--EEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--ecCceEEEecC
Confidence 356788888888888889999999 9999999999999999999999999998743 23446655543
No 285
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=61.42 E-value=24 Score=27.48 Aligned_cols=43 Identities=9% Similarity=-0.068 Sum_probs=38.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-..|..++-
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 4569999999999999999999999999999998877776654
No 286
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=61.30 E-value=8.9 Score=31.21 Aligned_cols=47 Identities=15% Similarity=0.263 Sum_probs=38.8
Q ss_pred HHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc---eEEecC
Q 016653 300 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 346 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~---akID~~ 346 (385)
+...+....+++...+|+.+|+|...+-+.|.+|...|-|. +.+|..
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDPE 61 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHH
Confidence 34455556789999999999999999999999999999874 567753
No 287
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=61.19 E-value=29 Score=26.96 Aligned_cols=43 Identities=12% Similarity=0.105 Sum_probs=38.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++-
T Consensus 50 ~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R 92 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGR 92 (140)
T ss_dssp HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 4579999999999999999999999999999998877766653
No 288
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=61.03 E-value=23 Score=27.67 Aligned_cols=67 Identities=4% Similarity=0.028 Sum_probs=49.2
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC---EEEEcCCCchhHHHHHHHHhhHHHHHHH
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG---VLETNRPDAKNALYQATIKQGDFLLNRI 376 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g---iv~~~~~d~~~~~y~~~i~~g~~l~~r~ 376 (385)
..++.+.+|+.+|++...+-+.|.+|...|-+.-+-|..++ .|..+ +.-...++++....+.++..+
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT--~~G~~~~~~~~~~~~~~~~~~ 121 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVN--AQQRKKIESLLSRVNKRITEA 121 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECC--SHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEEC--HHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999776666554 44433 334455666655555444443
No 289
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=60.81 E-value=14 Score=29.94 Aligned_cols=46 Identities=17% Similarity=0.299 Sum_probs=38.6
Q ss_pred HHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc---eEEecC
Q 016653 301 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH---CKIDKV 346 (385)
Q Consensus 301 ~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~---akID~~ 346 (385)
..++.....++...+|+.+|+|...+-+.|.+|...|-|. +.+|+.
T Consensus 13 L~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 13 VRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 3444556789999999999999999999999999999884 566765
No 290
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=60.76 E-value=19 Score=31.88 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 289 RYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 289 ~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
..+.+.++.++...-+.|=..+ +-..||+.||+|..-+-+-|..|..+|-|.. -+..|+....
T Consensus 8 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~--~~g~G~~V~~ 71 (239)
T 3bwg_A 8 QQIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQ--VRGSGIFVRK 71 (239)
T ss_dssp CHHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--eCCceEEEec
Confidence 4677888888888888999999 8999999999999999999999999998854 3555666543
No 291
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=60.72 E-value=41 Score=25.98 Aligned_cols=44 Identities=18% Similarity=0.147 Sum_probs=39.2
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEE
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVL 350 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv 350 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++-.
T Consensus 41 ~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~ 84 (138)
T 3bpv_A 41 EPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRR 84 (138)
T ss_dssp STTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcee
Confidence 57799999999999999999999999999999988877766643
No 292
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=60.46 E-value=23 Score=32.73 Aligned_cols=75 Identities=13% Similarity=0.014 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHh-----CCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH-hcCHHHHHhHHHHHHHHHhc-CCCh
Q 016653 98 EAHLAKSLFYIQI-----GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF-YMDFDLISKSIDKAKSLFEE-GGDW 170 (385)
Q Consensus 98 ~a~~~la~~~~~~-----Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~-~~~~~~~~~~i~ka~~~~~~-~~~~ 170 (385)
.++.-||.+|+.. ||.++|.++|.+..+... ++.++......+.... .++...+...++++-...-. .++|
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP--~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCS--AHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCC--TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCC--CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence 4689999999995 999999999999998764 3335555555554444 48999999999999876332 2444
Q ss_pred hhhh
Q 016653 171 ERKN 174 (385)
Q Consensus 171 ~~~~ 174 (385)
...+
T Consensus 278 ~lan 281 (301)
T 3u64_A 278 KLLV 281 (301)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 4333
No 293
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.25 E-value=98 Score=28.59 Aligned_cols=119 Identities=18% Similarity=0.195 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc---chhHHHhHHHHHHHHHHhc
Q 016653 72 KIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA---VGQKMDLVFYTLQLGFFYM 148 (385)
Q Consensus 72 ~~~~~l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~---~~~~id~~l~~i~~~i~~~ 148 (385)
..++.+.+|++.+.+ +...|. -+-+.-++.=|.+.++|++|.+.+...-..... .+.-.|+++.+|.+.-..
T Consensus 12 ~~~r~l~rl~~~I~~---G~yYEA-hQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~- 86 (312)
T 2wpv_A 12 KLAKTLQRFENKIKA---GDYYEA-HQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLA- 86 (312)
T ss_dssp CHHHHHHHHHHHHHH---TCHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhhc---cChHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHc-
Confidence 566777788877764 212221 233455555566677888888777664332211 122345555555443322
Q ss_pred CHHHHHhHHHHHHHHHhc--------------------------CCChhhhhhhhHHHHHhccccCCHHHHHHHHHh
Q 016653 149 DFDLISKSIDKAKSLFEE--------------------------GGDWERKNRLKVYEGLYCMSTRNFKKAASLFLD 199 (385)
Q Consensus 149 ~~~~~~~~i~ka~~~~~~--------------------------~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e 199 (385)
++..-.+.+.++.+++.. .||| .|.-.-|..+..+++|..|..+|+-
T Consensus 87 ~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp----~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 87 EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDP----YLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 222222334444444322 1222 2344556667788999999999874
No 294
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=60.21 E-value=27 Score=28.57 Aligned_cols=55 Identities=18% Similarity=0.088 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhH
Q 016653 74 EDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQK 133 (385)
Q Consensus 74 ~~~l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~ 133 (385)
.+=+.-|+.-+++ ..+..|+.+|-||--+++.|||++|.++...+.+.-+.+.+.
T Consensus 59 ~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 59 RLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp HHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 3445555554442 223468999999999999999999999999888765554443
No 295
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.72 E-value=1e+02 Score=29.21 Aligned_cols=98 Identities=8% Similarity=0.132 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--hCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HhhhccchhHHHhHHHHHH
Q 016653 66 LDSMRTKIEDELKKLDDRIADAEEN--LGESEVREAHLAKSLFYIQIGDKEKALEQLKVT-ESKTVAVGQKMDLVFYTLQ 142 (385)
Q Consensus 66 ~~~~~~~~~~~l~~Le~~l~~~~~n--~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~-~~~~~~~~~~id~~l~~i~ 142 (385)
+++..+.....+++|...|.++..+ .+..-++..+..+..-+.+..|.++.+..|..- +....-.+.+++.-+. +
T Consensus 58 Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~--~ 135 (390)
T 1deq_A 58 IDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ--R 135 (390)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH--H
Confidence 5666777888899999998887533 344556666777788888899999888877653 3333444555655554 5
Q ss_pred HHHHhcCHHHHHhHHHHHHHHHh
Q 016653 143 LGFFYMDFDLISKSIDKAKSLFE 165 (385)
Q Consensus 143 ~~i~~~~~~~~~~~i~ka~~~~~ 165 (385)
+-++..+.......|.|++..|+
T Consensus 136 ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 136 INLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777777765
No 296
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=59.66 E-value=43 Score=28.12 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=36.5
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
-.++.+.||+.+|++.+.+-+.+.+|-.+|-|. ...|.|...++
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 211 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEGLVK----LSRGKITILDS 211 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeCH
Confidence 367899999999999999999999999998774 34677777643
No 297
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=59.48 E-value=30 Score=28.02 Aligned_cols=47 Identities=17% Similarity=0.058 Sum_probs=35.7
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 306 SYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 306 pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
+=..++.+.||+.+|+|+..+++.+..|-..|=+..+=. ..|..-..
T Consensus 27 ~~~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~ 73 (149)
T 1ylf_A 27 PSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGLLK 73 (149)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESS
T ss_pred CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEeCC
Confidence 335799999999999999999999999999998865433 33443333
No 298
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=59.41 E-value=34 Score=26.82 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=35.4
Q ss_pred HHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 301 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 301 ~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
..++.... ++.+.+|+.+|++...+-+.|.+|...|-+.-.-|+.++-
T Consensus 44 L~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 44 LMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp HHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred HHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 34445566 9999999999999999999999999999998877665553
No 299
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=59.18 E-value=57 Score=25.95 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=48.7
Q ss_pred ccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhcc
Q 016653 128 VAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSI 201 (385)
Q Consensus 128 ~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~ 201 (385)
.+.+.+++..|++++ .++...+..-|.-..+++.. ++|+.+-....|-|+.+...|+|..|.+++-..+
T Consensus 33 ~s~~~~F~yAw~Lv~----S~~~~d~~~GI~lLe~l~~~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL 101 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVR----TRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLL 101 (126)
T ss_dssp CCHHHHHHHHHHHTT----SSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 556677788887776 45667777777777776653 3365555566778899999999999987764443
No 300
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=58.95 E-value=34 Score=26.77 Aligned_cols=46 Identities=11% Similarity=0.212 Sum_probs=34.8
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
..++.+.||+.+|+|...+.+.+..|...|-+..+=....|..-..
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESS
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCC
Confidence 5689999999999999999999999999998765322233444433
No 301
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=58.91 E-value=11 Score=28.14 Aligned_cols=32 Identities=13% Similarity=-0.070 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTV 128 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~ 128 (385)
..+++.+|..|...|++++|.++|.+..+...
T Consensus 53 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 53 SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 45789999999999999999999999876653
No 302
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=58.59 E-value=1.4 Score=32.47 Aligned_cols=46 Identities=15% Similarity=0.293 Sum_probs=34.9
Q ss_pred HHHHHHHhccccccccHHHHHHHhCCChH---HHHHHHHHHHhCCccceEEe
Q 016653 296 RTVVYSQFLESYKSVTIEAMAKAFGVTVE---FIDVELSRFIAAGKLHCKID 344 (385)
Q Consensus 296 R~~~~~qy~~pY~~I~l~~mA~~fg~s~~---~iE~~L~~lI~~g~l~akID 344 (385)
|..++.|++.|=.+=.|++++= +.|+ .+|..|.+|...|+|.++||
T Consensus 9 r~~iL~qiL~~eAreRL~rI~l---vKPe~A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 9 KKQIMMQILTPEARSRLANLRL---TRPDFVEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp SHHHHTTTCCHHHHHHHHHHTT---TCHHHHHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHHHHcCHHHHHHHHhhhh---cCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 4556778888766666665543 4444 69999999999999999886
No 303
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=58.42 E-value=22 Score=26.28 Aligned_cols=44 Identities=14% Similarity=0.317 Sum_probs=36.3
Q ss_pred ccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 310 VTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 310 I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
++...+|+.+|++...+-+.|.+|...|-+...-|.-...|..+
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEC
Confidence 99999999999999999999999999999944445444455554
No 304
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=58.11 E-value=52 Score=25.39 Aligned_cols=43 Identities=14% Similarity=0.129 Sum_probs=38.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
+..++.+.+|+.+|++...+-+.+.+|...|-+.-..|..++-
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 4578999999999999999999999999999998887776653
No 305
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=58.09 E-value=53 Score=25.52 Aligned_cols=49 Identities=14% Similarity=0.192 Sum_probs=38.9
Q ss_pred HHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEe
Q 016653 294 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 344 (385)
Q Consensus 294 ~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID 344 (385)
..|.+++..+.+ ...+...+|+.+|+|...+-+.|..|...|-+..+-+
T Consensus 46 ~~rl~IL~~L~~--~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 46 PNRLRLLSLLAR--SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp HHHHHHHHHHTT--CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 345555555433 4588999999999999999999999999998877554
No 306
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=58.06 E-value=81 Score=26.23 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=39.4
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 306 SYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 306 pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
|...++.+.+|+.+|++...+-..|.+|...|=|.-.-|..++
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 4568999999999999999999999999999999888887776
No 307
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=57.94 E-value=41 Score=25.38 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=38.5
Q ss_pred cccccHHHHHHHh-CCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~f-g~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
....+...+|+.+ |+|...+-+.|.+|...|-|.-+.|..++
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4678999999999 99999999999999999999988887665
No 308
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=57.79 E-value=12 Score=23.21 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.5
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHH
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRF 333 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~l 333 (385)
.-.+...+|+.||+|..-+.+++.++
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~ 45 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDP 45 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhH
Confidence 55789999999999999999988654
No 309
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=57.35 E-value=44 Score=26.46 Aligned_cols=43 Identities=9% Similarity=0.088 Sum_probs=37.7
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 306 SYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 306 pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
.+..++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 48 ~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 48 KHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 3567999999999999999999999999999999877766554
No 310
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=57.07 E-value=36 Score=26.55 Aligned_cols=43 Identities=16% Similarity=0.084 Sum_probs=38.5
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
...++.+.+|+.+|++...+-..|.+|...|-+.-.-|..++-
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 4579999999999999999999999999999998887776664
No 311
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=57.05 E-value=42 Score=28.51 Aligned_cols=43 Identities=12% Similarity=0.030 Sum_probs=35.3
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNR 354 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~ 354 (385)
-.++...||+.+|+|.+.+-+.+.+|..+|-|. ...|.|...+
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d 216 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHNILE----VSPRSVTLLD 216 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSCEEESC
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----ecCCEEEEeC
Confidence 467899999999999999999999999988774 2346666653
No 312
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=57.03 E-value=35 Score=27.54 Aligned_cols=42 Identities=14% Similarity=0.118 Sum_probs=38.4
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
+..++.+.||+.+|++...+-+.|.+|...|-|.-+-|..++
T Consensus 58 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 58 KPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp CTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 467999999999999999999999999999999888877766
No 313
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=56.57 E-value=43 Score=24.98 Aligned_cols=33 Identities=0% Similarity=-0.027 Sum_probs=30.9
Q ss_pred ccHHHHHHHhCCChHHHHHHHHHHHhCCccceE
Q 016653 310 VTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 342 (385)
Q Consensus 310 I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ak 342 (385)
++...+|..+|+|+..+.+.+-.|...|=+.-.
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 999999999999999999999999999988654
No 314
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=56.55 E-value=20 Score=30.40 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcccc-ccccHHHHHHHhCCChHHHHHHHHHHHhCCc-cc
Q 016653 293 REVRTVVYSQFLESY-KSVTIEAMAKAFGVTVEFIDVELSRFIAAGK-LH 340 (385)
Q Consensus 293 ~~iR~~~~~qy~~pY-~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~-l~ 340 (385)
..-|.+.+.+++..- ..++.+.||+.||+|...+.+.|..|-..|- |.
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~ 68 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIV 68 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEE
Confidence 345667777887643 4599999999999999999999999988887 64
No 315
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=56.05 E-value=52 Score=25.59 Aligned_cols=42 Identities=14% Similarity=0.098 Sum_probs=37.5
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|+|...+-+.|.+|...|-+.-.-|..++
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~ 82 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 457999999999999999999999999999999887766554
No 316
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=55.92 E-value=16 Score=28.69 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=35.3
Q ss_pred HHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccce
Q 016653 294 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 294 ~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a 341 (385)
.++.+++..|-. .-.+...+|+.||++...+.+++..+...|.+..
T Consensus 7 ~l~~~i~~~~~~--~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~ 52 (121)
T 2pjp_A 7 AIWQKAEPLFGD--EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITA 52 (121)
T ss_dssp HHHHHHGGGCSS--SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE
Confidence 344544444421 3457889999999999999999999999998855
No 317
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=55.70 E-value=15 Score=25.05 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=28.5
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCcc
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 339 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l 339 (385)
--++++..|+.+|++.+++-+.|.+|=.-|-|
T Consensus 24 GildI~~~a~kygV~kdeV~~~LrrLe~KGLI 55 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEKQEVVKLLEALKNKGLI 55 (59)
T ss_dssp SEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSE
T ss_pred CEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCe
Confidence 45899999999999999999999999887755
No 318
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=55.46 E-value=74 Score=25.14 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhc
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM 148 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~ 148 (385)
.....+-+=|+..||.++|..++.++. .+...-++.-..+..++..+
T Consensus 8 kki~~ll~EY~~~~D~~Ea~~cl~eL~----~p~f~~e~V~~~i~~alE~~ 54 (129)
T 2nsz_A 8 KEIDMLLKEYLLSGDISEAEHCLKELE----VPHFHHELVYEAIVMVLEST 54 (129)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHT----CGGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhC----CCccHHHHHHHHHHHHHcCC
Confidence 333444555888999999999998764 12333455555666666654
No 319
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=55.26 E-value=43 Score=25.83 Aligned_cols=42 Identities=10% Similarity=0.154 Sum_probs=37.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 567999999999999999999999999999999877666554
No 320
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=55.02 E-value=51 Score=25.84 Aligned_cols=43 Identities=9% Similarity=0.034 Sum_probs=36.4
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++-
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R 96 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRR 96 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcc
Confidence 4579999999999999999999999999999998877766553
No 321
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=54.97 E-value=12 Score=36.84 Aligned_cols=52 Identities=4% Similarity=-0.130 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHH
Q 016653 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKA 160 (385)
Q Consensus 100 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka 160 (385)
...++..|.++|++.++.+.+.. ++. +.+.++...+...|.|+.+..+..++
T Consensus 97 ~~~Li~~Y~Klg~l~e~e~f~~~-------pn~--~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 97 ETELIFALAKTNRLAELEEFING-------PNN--AHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ------------CHHHHTTTTTC-------C------------------CTTTHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHcC-------CcH--HHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 56678889999999998776642 211 35555666667778898888877765
No 322
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=54.60 E-value=43 Score=26.00 Aligned_cols=41 Identities=17% Similarity=0.071 Sum_probs=36.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
..++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 38999999999999999999999999999999887776665
No 323
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=54.56 E-value=47 Score=25.75 Aligned_cols=53 Identities=15% Similarity=0.212 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEe
Q 016653 291 YMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 344 (385)
Q Consensus 291 l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID 344 (385)
+-+..|.+++..+ .....++...+|+.+|+|...+-+.|..|...|-+..+-+
T Consensus 39 l~~~~rl~IL~~L-~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 39 IADENRAKITYAL-CQDEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRKE 91 (122)
T ss_dssp HHSHHHHHHHHHH-HHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--
T ss_pred hCCHHHHHHHHHH-HHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEE
Confidence 3344455555443 2235689999999999999999999999999998876433
No 324
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=54.53 E-value=56 Score=25.47 Aligned_cols=47 Identities=6% Similarity=0.029 Sum_probs=37.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC---EEEEc
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG---VLETN 353 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g---iv~~~ 353 (385)
+..++.+.+|+.+|++...+-+.|.+|...|-|.-.-|..++ .|..+
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT 98 (143)
T 3oop_A 49 NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLT 98 (143)
T ss_dssp HSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEEC
T ss_pred cCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeEC
Confidence 467999999999999999999999999999999877655444 45444
No 325
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=54.38 E-value=46 Score=28.62 Aligned_cols=60 Identities=12% Similarity=0.011 Sum_probs=45.4
Q ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc--chhHHHhHHHHHHHHHHhcCHH
Q 016653 92 GESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVA--VGQKMDLVFYTLQLGFFYMDFD 151 (385)
Q Consensus 92 ~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~~id~~l~~i~~~i~~~~~~ 151 (385)
-..+...=+|-+|+++...+||.+|.+.+..+...|.. .+++.-+..-+|=+.+..|+..
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP 70 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMP 70 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555566889999999999999999999999988853 3455555566666777777643
No 326
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=54.11 E-value=24 Score=27.74 Aligned_cols=48 Identities=6% Similarity=0.016 Sum_probs=37.6
Q ss_pred HHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 301 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 301 ~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
..++.-...++.+.+|+.+|++...+-+.+.+|...|=+.-.-|+.++
T Consensus 42 L~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~ 89 (140)
T 3hsr_A 42 LMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDE 89 (140)
T ss_dssp HHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred HHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCc
Confidence 344444678999999999999999999999999999999877766655
No 327
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=53.89 E-value=46 Score=26.23 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=37.5
Q ss_pred cccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 305 ESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 305 ~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
.....++...||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 50 ~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 50 SLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHA 93 (152)
T ss_dssp HHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSST
T ss_pred HhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 33567999999999999999999999999999999776665444
No 328
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=53.47 E-value=57 Score=26.47 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=37.8
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.||+.+|++...+-+.|.+|...|-|.-..|..++
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 457999999999999999999999999999999887776655
No 329
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=53.24 E-value=28 Score=27.11 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=37.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 457999999999999999999999999999999877776554
No 330
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=53.16 E-value=24 Score=30.98 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecC--CCEEEEcC
Q 016653 288 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKV--AGVLETNR 354 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~--~giv~~~~ 354 (385)
.+.+++.||..++..-+.|=..+ +-..||+.||||..-+-+-|..|-..|-+..+--+. .|+.+...
T Consensus 6 ~~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~ 75 (239)
T 2di3_A 6 HESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITAA 75 (239)
T ss_dssp HHHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCC
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCC
Confidence 46789999999999999999999 578999999999999999999999999875420334 67766653
No 331
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=53.04 E-value=38 Score=33.56 Aligned_cols=113 Identities=8% Similarity=0.123 Sum_probs=63.1
Q ss_pred HHHHHhcCCC--CCHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhCHHH--HHHHHHHHHHHHHHhCCH
Q 016653 51 ETLVAESVLE--MDQSV-------------LDSMRTKIEDELKKLDDRIADAEENLGESE--VREAHLAKSLFYIQIGDK 113 (385)
Q Consensus 51 ~~~~~~~~~~--~D~~~-------------~~~~~~~~~~~l~~Le~~l~~~~~n~~~~~--ir~a~~~la~~~~~~Gd~ 113 (385)
..-|++-.|| .|++| +.+........+++|..++.++..|.-+.+ ++..+..|-.=.-+.++.
T Consensus 25 qs~Cke~~WPfCaDeDwGvkCPSGCrLQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dN 104 (562)
T 3ghg_A 25 QSACKDSDWPFCSDEDWNYKCPSGCRMKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNR 104 (562)
T ss_dssp --CCCCCCCCBCCSSSBTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHH
T ss_pred ccccccCCCCcccccccCCCCCcccchhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcc
Confidence 3445555565 45555 677777888888888888888754422211 111122222222344556
Q ss_pred HHHHHHHH-HHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHh
Q 016653 114 EKALEQLK-VTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFE 165 (385)
Q Consensus 114 ~~A~~~~~-~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~ 165 (385)
++...-|. +++......+.+++..+ -++.++.++.......|.|++.-|+
T Consensus 105 dNtynE~S~ELRRrIqyLKekVdnQl--snIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 105 DNTYNRVSEDLRSRIEVLKRKVIEKV--QHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66555555 44444444555666555 3345566766777777777776554
No 332
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=52.83 E-value=53 Score=33.51 Aligned_cols=81 Identities=14% Similarity=0.014 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhhhhhhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWERKNRLK 177 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~ 177 (385)
..+..+|+++.+.|+++.|.++|.++.++- .+..+....++.+.+......+ +..++...
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~-----------~l~~l~~~~~~~~~~~~~~~~a----~~~~~~~~----- 741 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLE-----------SLFLLHSSFNNKEGLVTLAKDA----ETTGKFNL----- 741 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHH-----------HHHHHHHHTTCHHHHHHHHHHH----HHTTCHHH-----
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHccChh-----------hhHHHHHHcCCHHHHHHHHHHH----HHcCchHH-----
Confidence 567899999999999999999998876642 2333444466666544322221 11222211
Q ss_pred HHHHHhccccCCHHHHHHHHHhc
Q 016653 178 VYEGLYCMSTRNFKKAASLFLDS 200 (385)
Q Consensus 178 ~~~gl~~l~~r~~~~Aa~~f~e~ 200 (385)
....++..|++.+|.+.|.++
T Consensus 742 --A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 742 --AFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp --HHHHHHHHTCHHHHHHHHHHT
T ss_pred --HHHHHHHcCCHHHHHHHHHHc
Confidence 112345577888888887764
No 333
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=52.62 E-value=43 Score=26.81 Aligned_cols=42 Identities=7% Similarity=0.158 Sum_probs=36.0
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-+-|..++
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 103 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDR 103 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 467999999999999999999999999999999888776665
No 334
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=52.60 E-value=66 Score=25.50 Aligned_cols=42 Identities=12% Similarity=0.177 Sum_probs=37.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++...+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 56 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 56 FGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp HCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 457999999999999999999999999999999877766554
No 335
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=52.07 E-value=75 Score=24.84 Aligned_cols=46 Identities=13% Similarity=0.043 Sum_probs=36.7
Q ss_pred cccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 305 ESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 305 ~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
.....++.+.+|+.+|+|...+-+.|.+|...|-|.-+ ..+.+..+
T Consensus 18 ~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT 63 (142)
T 1on2_A 18 EEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLT 63 (142)
T ss_dssp HHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEEC
T ss_pred hhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEc
Confidence 33467999999999999999999999999999887653 23455544
No 336
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=51.88 E-value=23 Score=26.88 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=30.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhH
Q 016653 101 LAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLV 137 (385)
Q Consensus 101 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~ 137 (385)
..+|+-+...|+++.|+.+++++..-|..+...+.++
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~ 60 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVL 60 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5788889999999999998988888887776655443
No 337
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=51.62 E-value=67 Score=26.98 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=35.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecC-CCEEEEcC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKV-AGVLETNR 354 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~-~giv~~~~ 354 (385)
-.++-+.||+.+|+|.+.+-+.+.+|..+|-| ... .|.|...+
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I----~~~~~~~i~i~d 209 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGIL----ERVNQRTLLLKD 209 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE----EESSSSEEEESC
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE----EEcCCCEEEEcC
Confidence 46889999999999999999999999998865 343 55666653
No 338
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=51.08 E-value=65 Score=25.68 Aligned_cols=42 Identities=14% Similarity=0.115 Sum_probs=35.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 105 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQ 105 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CC
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCC
Confidence 467999999999999999999999999999999876655444
No 339
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=51.01 E-value=55 Score=27.16 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=33.6
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
.++-+.||+.+|++.+.+-+.+.+|..+|-|. ...|.|...
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~ 207 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVY 207 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----eCCCEEEEE
Confidence 57899999999999999999999999988764 234555544
No 340
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=50.47 E-value=33 Score=28.43 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceE
Q 016653 293 REVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 342 (385)
Q Consensus 293 ~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ak 342 (385)
..+|...+...- +=..++.+.||+.+|+|+.++++-+..|-..|=+..+
T Consensus 13 yAlr~l~~La~~-~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 13 VAVHSILYLDAH-RDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHHHHHHHTT-TTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHHHHHHHhC-CCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 344544444432 3356999999999999999999999999999987654
No 341
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=50.02 E-value=65 Score=26.17 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCC
Q 016653 289 RYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVA 347 (385)
Q Consensus 289 ~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~ 347 (385)
..+-+..|.+++..+. ...++...||+.+|++...+-.-|..|...|-|..+-|...
T Consensus 53 ~aL~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 53 EVAAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRF 109 (151)
T ss_dssp HHHTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHhCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCE
Confidence 4445566777665554 46789999999999999999999999999999988765444
No 342
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=49.99 E-value=40 Score=26.51 Aligned_cols=42 Identities=2% Similarity=0.101 Sum_probs=32.8
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 52 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 52 ASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp SSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 558999999999999999999999999999988766665544
No 343
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=49.96 E-value=60 Score=27.52 Aligned_cols=44 Identities=18% Similarity=0.061 Sum_probs=36.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
..++-+.||+.+|+|.+.+-+.+.+|..+|-|. ...|.|...++
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 222 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLA----LDGKRIKIIDC 222 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe----eCCCEEEEeCH
Confidence 468899999999999999999999999988763 33566777643
No 344
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=49.78 E-value=1.7e+02 Score=27.38 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhc---cchhHHHhHHHHHHHHH
Q 016653 72 KIEDELKKLDDRIADAEENLG---ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTV---AVGQKMDLVFYTLQLGF 145 (385)
Q Consensus 72 ~~~~~l~~Le~~l~~~~~n~~---~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~---~~~~~id~~l~~i~~~i 145 (385)
+.++.+++|++.+.+ +.. .| --+-+.-++.=|.+.++|++|++++..--.... ..+.-.|++..++.+.-
T Consensus 11 ~~~~~i~rl~~~I~~---G~y~~~YE-AHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~ 86 (336)
T 3lpz_A 11 KIERIIARLQRRIAE---GQPEEQYE-AAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFR 86 (336)
T ss_dssp HHHHHHHHHHHHHHH---CCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---CCCccccH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHH
Confidence 345667777776663 222 22 123345556667788899999888876433221 12233456655555543
Q ss_pred HhcCHHHHHhHHHHHHHHHhcCC--C------------hhhh--------hhhhHHHHHhccccCCHHHHHHHHHh
Q 016653 146 FYMDFDLISKSIDKAKSLFEEGG--D------------WERK--------NRLKVYEGLYCMSTRNFKKAASLFLD 199 (385)
Q Consensus 146 ~~~~~~~~~~~i~ka~~~~~~~~--~------------~~~~--------~~l~~~~gl~~l~~r~~~~Aa~~f~e 199 (385)
..+ +..-.....|+.+++..-+ + |..+ ..|.-.-|..+..+++|..|-.+|+-
T Consensus 87 ~~~-~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il 161 (336)
T 3lpz_A 87 QAG-QRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL 161 (336)
T ss_dssp HHT-CCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HcC-CCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh
Confidence 322 1111123344444433211 1 2211 12334556777888999999988874
No 345
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=49.45 E-value=61 Score=25.29 Aligned_cols=42 Identities=19% Similarity=0.111 Sum_probs=34.4
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~ 89 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDG 89 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCC
Confidence 567999999999999999999999999999999776655443
No 346
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=48.79 E-value=91 Score=24.11 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=36.9
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
..++.+.+|+.+|+|...+-+-|..|...|=+.-.-|..++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 56999999999999999999999999999999887766654
No 347
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=48.38 E-value=23 Score=27.82 Aligned_cols=43 Identities=2% Similarity=0.092 Sum_probs=29.9
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++-
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR 91 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQR 91 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCC
Confidence 4579999999999999999999999999999998777766653
No 348
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=48.22 E-value=43 Score=27.75 Aligned_cols=64 Identities=11% Similarity=0.079 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHh-----------cCHHHHHh
Q 016653 97 REAHLAKSLFYIQIGDK----------EKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFY-----------MDFDLISK 155 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~----------~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~-----------~~~~~~~~ 155 (385)
.+++..+|..+.+.|++ ++|...|.+..+.... ..+.++++--+.... ++++.+..
T Consensus 36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~ 112 (158)
T 1zu2_A 36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQ 112 (158)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHH
Confidence 45788888888888775 4888888887765432 233333333333222 35555655
Q ss_pred HHHHHHHH
Q 016653 156 SIDKAKSL 163 (385)
Q Consensus 156 ~i~ka~~~ 163 (385)
+..||-++
T Consensus 113 ~~~kAl~l 120 (158)
T 1zu2_A 113 FFQQAVDE 120 (158)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555543
No 349
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=48.07 E-value=1.2e+02 Score=28.69 Aligned_cols=63 Identities=6% Similarity=-0.128 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
-.++..+|-.+.-.|++++|...+.+......+ ...+...-.+....|++..+...+.+|-.+
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s----~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS----WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 456777787777789999999999988876522 122223344556789999988888877765
No 350
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=48.04 E-value=95 Score=26.08 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=35.6
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
.++-+.||+.+|+|.+.+-+.+.+|..+|-|. ...|.|...++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 219 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIR----LEGKSVLISDS 219 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----ecCCEEEEcCH
Confidence 57899999999999999999999999998763 34567777643
No 351
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=47.75 E-value=78 Score=24.36 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=36.2
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
.++.+.+|+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 7999999999999999999999999999999877766555
No 352
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=47.69 E-value=42 Score=28.58 Aligned_cols=51 Identities=22% Similarity=0.367 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceE
Q 016653 290 YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 342 (385)
Q Consensus 290 ~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ak 342 (385)
.+.+..+.+++. ++. -..++...+|+.+|+|+..+-+.|..|...|-|...
T Consensus 16 ~l~d~~~~~IL~-~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 16 VMLEDTRRKILK-LLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHSHHHHHHHH-HHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCHHHHHHHH-HHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 344455555444 444 368999999999999999999999999999999765
No 353
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=47.41 E-value=86 Score=29.96 Aligned_cols=56 Identities=16% Similarity=-0.014 Sum_probs=31.1
Q ss_pred HHHHHHHHHHh----CCHHHHHHHHHHHHhhhccchhHHHhHHHHHHH---HHHhcCHHHHHhHHHHHH
Q 016653 100 HLAKSLFYIQI----GDKEKALEQLKVTESKTVAVGQKMDLVFYTLQL---GFFYMDFDLISKSIDKAK 161 (385)
Q Consensus 100 ~~~la~~~~~~----Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~---~i~~~~~~~~~~~i~ka~ 161 (385)
++.||.+|... +|+++|.++|.+.. +++ .+.+..+-.+ +...+|+..+...+.++-
T Consensus 216 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~-~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 216 VDSVARVLGDATLGTPDEKTAQALLEKIA-----PGY-PASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGS-THHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 46777777655 67777777777765 111 1122222222 123567777777777654
No 354
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=47.04 E-value=4.1 Score=32.76 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=35.4
Q ss_pred HHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEe
Q 016653 296 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 344 (385)
Q Consensus 296 R~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID 344 (385)
|..++.|++.|=.+-.|++++=.=-=-...||..|..|...|+|.+||+
T Consensus 42 r~~iL~qiL~peAreRL~rI~lVkPekA~~VE~~Li~lAq~Gql~~kVs 90 (127)
T 2jxn_A 42 VGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 90 (127)
T ss_dssp TTHHHHTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSCBC
T ss_pred HHHHHHHHcCHHHHHHHhcccccCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 3456778888877666766664222223479999999999999999886
No 355
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=47.00 E-value=97 Score=26.00 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=34.2
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
.++-+.||+.+|++.+.+-+.+.+|..+|-|. ...|.|...++
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 229 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH----ARGKTVVLYGT 229 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEEC-
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----ECCCEEEEeeC
Confidence 47889999999999999999999999998774 23465655533
No 356
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=46.95 E-value=25 Score=28.39 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=33.7
Q ss_pred cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEE
Q 016653 311 TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 352 (385)
Q Consensus 311 ~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~ 352 (385)
+++.||+.+|+|+.++++-+..|...|=+...=. ..|..-.
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~La 65 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLK 65 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEES
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceec
Confidence 9999999999999999999999999998866444 3344333
No 357
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=46.79 E-value=38 Score=27.10 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=32.8
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 568999999999999999999999999999988766655444
No 358
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=46.48 E-value=43 Score=32.20 Aligned_cols=91 Identities=10% Similarity=-0.042 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCCChh
Q 016653 99 AHLAKSLFYIQIG---DKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGGDWE 171 (385)
Q Consensus 99 a~~~la~~~~~~G---d~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~----~~~~~~~~~~i~ka~~~~~~~~~~~ 171 (385)
+++.||..|...| ++++|+++|.+..+....... .+..+-.+... .+|+..+.....++- .+++.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~---~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~ 249 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ---RVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPA 249 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH---HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHH
Confidence 7899999999999 999999999888765422221 11222222211 157888888888765 23443
Q ss_pred hhhhhhHHHHHh-c--cccCCHHHHHHHHHhcc
Q 016653 172 RKNRLKVYEGLY-C--MSTRNFKKAASLFLDSI 201 (385)
Q Consensus 172 ~~~~l~~~~gl~-~--l~~r~~~~Aa~~f~e~~ 201 (385)
-... -|.. + ...+++.+|..+|-.+.
T Consensus 250 a~~~----Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 250 SWVS----LAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp HHHH----HHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 3322 2222 2 45889999999988764
No 359
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=46.44 E-value=19 Score=25.91 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=23.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHH
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~ 332 (385)
|-+.++..+|..+|++.+++|+.|..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 77889999999999999999988754
No 360
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=46.44 E-value=20 Score=28.32 Aligned_cols=33 Identities=15% Similarity=0.377 Sum_probs=30.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCc-cc
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGK-LH 340 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~-l~ 340 (385)
+-.++..+|+.-|++...++..|+.++.+|. ++
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 6789999999999999999999999999995 54
No 361
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=45.91 E-value=61 Score=25.64 Aligned_cols=47 Identities=15% Similarity=0.051 Sum_probs=36.2
Q ss_pred HhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 302 QFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 302 qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
.++.....++...+|+.+|++...+-+.|.+|...|-+.-..|..++
T Consensus 50 ~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~ 96 (155)
T 3cdh_A 50 ACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDK 96 (155)
T ss_dssp HHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-----
T ss_pred HHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcC
Confidence 34444668999999999999999999999999999988765554443
No 362
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.45 E-value=1.1e+02 Score=24.83 Aligned_cols=49 Identities=18% Similarity=0.063 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhc
Q 016653 96 VREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM 148 (385)
Q Consensus 96 ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~ 148 (385)
+......+-+=|+..||.++|..++.++.. +...-+++-..+..++..+
T Consensus 8 l~kki~~lL~EY~~~~D~~EA~~cl~EL~~----p~f~~e~V~~~i~~alE~~ 56 (152)
T 2ion_A 8 LVKEIDMLLKEYLLSGDISEAEHCLKELEV----PHFHHELVYEAIVMVLEST 56 (152)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTC----GGGHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHhCC----CcchHHHHHHHHHHHHcCC
Confidence 334444455558889999999999987642 2333455555666666653
No 363
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=45.08 E-value=37 Score=25.01 Aligned_cols=42 Identities=7% Similarity=0.180 Sum_probs=31.8
Q ss_pred HHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCC
Q 016653 295 VRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAG 337 (385)
Q Consensus 295 iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g 337 (385)
.+..++..|+.. ...++..+|..||+|...+-+|+..+-..|
T Consensus 10 ~k~~~v~~~~~~-~g~s~~~ia~~~gIs~~tl~rW~~~~~~~g 51 (97)
T 2jn6_A 10 FKRDAVALYENS-DGASLQQIANDLGINRVTLKNWIIKYGSNH 51 (97)
T ss_dssp HHHHHHHHHTTG-GGSCHHHHHHHHTSCHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHc-CCChHHHHHHHHCcCHHHHHHHHHHHhhcC
Confidence 355556666432 157899999999999999999998876544
No 364
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=44.89 E-value=28 Score=32.25 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=37.7
Q ss_pred HHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCcc
Q 016653 296 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 339 (385)
Q Consensus 296 R~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l 339 (385)
|...+.+++.....++.+.||+.||+|...+-+.|..|-..|-+
T Consensus 6 r~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~ 49 (321)
T 1bia_A 6 VPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVD 49 (321)
T ss_dssp HHHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCc
Confidence 44556677777788999999999999999999999999887765
No 365
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.69 E-value=2.2e+02 Score=31.11 Aligned_cols=169 Identities=12% Similarity=0.021 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhhcc--------------------chhHHHhHHHHHHHHHHhcCHHHHHhHHHH
Q 016653 100 HLAKSLFYIQIGDKEKALEQLKVTESKTVA--------------------VGQKMDLVFYTLQLGFFYMDFDLISKSIDK 159 (385)
Q Consensus 100 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--------------------~~~~id~~l~~i~~~i~~~~~~~~~~~i~k 159 (385)
.+-+|..|..+|++++|.+++.+.-.-... .......++.++++.=..+-++++......
T Consensus 845 ~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l 924 (1139)
T 4fhn_B 845 VYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL 924 (1139)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 477899999999999999999775211100 011123456666655555677777766665
Q ss_pred HHHHHhcCCChhhhhhhhHHHHHhccccCCHHHHHHHHHhccccCCcCccCCHhHHHHHHHHHHHhh---------CC--
Q 016653 160 AKSLFEEGGDWERKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIIS---------LD-- 228 (385)
Q Consensus 160 a~~~~~~~~~~~~~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t~~~~e~~~~~~~~~Y~~l~al~s---------~~-- 228 (385)
|-+... ..++..+..+-.--=.+++..+.|.+|...+...... + ...++++-+|. .|.. ++
T Consensus 925 Ai~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~----~--~r~~cLr~LV~-~lce~~~~~~L~~lpf~ 996 (1139)
T 4fhn_B 925 ADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT----P--LKKSCLLDFVN-QLTKQGKINQLLNYSMP 996 (1139)
T ss_dssp HHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS----S--SCHHHHHHHHH-HHHHHCCHHHHHHHTTT
T ss_pred HHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH----H--HHHHHHHHHHH-HHHhCCChhhhhCCCCc
Confidence 544322 2344333222111122477788998888777654221 1 12345544432 2221 11
Q ss_pred --hhHHHhhccCChHHHHH--hcCcchHHHHHHHHH--hccHHHHHHHHHHhHHHh
Q 016653 229 --RVSLKQKVVDAPEILTV--IGKIPYLSEFLNSLY--DCQYKSFFSAFAGLTEQI 278 (385)
Q Consensus 229 --R~~lk~~v~~~~e~~~~--l~~~p~~~~li~~f~--~~~y~~~~~~L~~~~~~l 278 (385)
.+++ ..++... .++. +...|.+.+++.+|+ .+||+++-.++-+.-..+
T Consensus 997 gl~~~V-d~IL~~k-Ar~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 997 TLRQDV-DNLLERK-AFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp SCHHHH-HHHHHHH-HHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHH-HHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 1111 1111110 1111 234577889999985 578888777766654444
No 366
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=44.67 E-value=32 Score=26.89 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=37.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-+-|..++
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 457999999999999999999999999999999887775554
No 367
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=44.64 E-value=1.1e+02 Score=27.00 Aligned_cols=45 Identities=7% Similarity=0.007 Sum_probs=37.1
Q ss_pred cccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEE
Q 016653 305 ESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 352 (385)
Q Consensus 305 ~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~ 352 (385)
-.+-..+.+.+|..+|+++..++..|.+|...|-+. + ..+|.|..
T Consensus 174 l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~-~--~~~~~~~~ 218 (232)
T 2qlz_A 174 LLNGRATVEELSDRLNLKEREVREKISEMARFVPVK-I--INDNTVVL 218 (232)
T ss_dssp HHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE-E--ETTTEEEE
T ss_pred HhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE-E--ecCCeEEe
Confidence 346789999999999999999999999999998776 1 34555555
No 368
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=43.88 E-value=70 Score=24.91 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=37.5
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
... +.+.+|+.+|++...+-+.|.+|...|-+.-+-|..++-
T Consensus 49 ~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 90 (144)
T 3f3x_A 49 EPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRR 90 (144)
T ss_dssp SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCc
Confidence 344 999999999999999999999999999998888887764
No 369
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=43.85 E-value=77 Score=27.67 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=33.6
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
.++-..||..+|++.+.+-+.+.+|..+|-|. ...|.|...
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~ 257 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVY 257 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEEC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----EcCCEEEEE
Confidence 57889999999999999999999999988764 334555544
No 370
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=43.66 E-value=39 Score=27.86 Aligned_cols=43 Identities=9% Similarity=0.056 Sum_probs=38.3
Q ss_pred HHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc
Q 016653 297 TVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 340 (385)
Q Consensus 297 ~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ 340 (385)
.+.+..|++ .-+++...+|+++|+|-..+.-.|-.|=.+|.+.
T Consensus 13 k~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~ 55 (165)
T 2vxz_A 13 LRDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVT 55 (165)
T ss_dssp HHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceE
Confidence 345788999 9999999999999999999999999999998874
No 371
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=43.63 E-value=41 Score=27.04 Aligned_cols=47 Identities=11% Similarity=0.120 Sum_probs=37.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC---EEEEc
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG---VLETN 353 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g---iv~~~ 353 (385)
+..++.+.+|+.+|++...+-+.|.+|...|-|.-+-|..++ .|..+
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT 114 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLT 114 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeEC
Confidence 357999999999999999999999999999999776655544 45544
No 372
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=43.61 E-value=37 Score=24.78 Aligned_cols=38 Identities=18% Similarity=0.384 Sum_probs=28.6
Q ss_pred HHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHH
Q 016653 294 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFI 334 (385)
Q Consensus 294 ~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI 334 (385)
.-|.-....| +.-.+...+|+.+|+|+..|...+.+..
T Consensus 41 ~~r~vl~l~~---~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 41 EHRAVIQRSY---YRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3344344456 6677999999999999999988887654
No 373
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=43.38 E-value=4 Score=32.24 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=34.8
Q ss_pred HHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEe
Q 016653 296 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 344 (385)
Q Consensus 296 R~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID 344 (385)
|..++.|++.|=.+=.|++++=.=-=-...||..|..|...|+|.++||
T Consensus 42 r~~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~li~laq~Gql~~ki~ 90 (116)
T 2hvu_A 42 VGAAIANFLEPQALERLSRVALVRRDRAQAVETYLKKLIATNNVTHKIT 90 (116)
T ss_dssp SSTTTTTTBCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCBC
T ss_pred HHHHHHHHcCHHHHHHHHhHhhcCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 3345667777766666666654322233479999999999999999886
No 374
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=43.30 E-value=61 Score=25.80 Aligned_cols=44 Identities=9% Similarity=0.184 Sum_probs=37.8
Q ss_pred cccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 305 ESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 305 ~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
.+...++.+.+|+.+|++...+-+.|.+|...|-+.-+-|..++
T Consensus 47 ~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~Dr 90 (147)
T 4b8x_A 47 SKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDG 90 (147)
T ss_dssp SGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcC
Confidence 45567999999999999999999999999999999988888776
No 375
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=43.25 E-value=34 Score=27.14 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=35.8
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccce--EEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC--KIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a--kID~~~g 348 (385)
...++.+.+|+.+|++...+-..|.+|...|-+.- +-|..++
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~ 96 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDS 96 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCC
Confidence 45699999999999999999999999999999987 6666655
No 376
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=43.20 E-value=46 Score=26.09 Aligned_cols=42 Identities=7% Similarity=0.060 Sum_probs=36.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
+..++.+.+|+.+|++...+-..|.+|...|-+.-.-|..++
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 84 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDR 84 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCG
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCC
Confidence 456999999999999999999999999999998766655544
No 377
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=42.94 E-value=65 Score=33.20 Aligned_cols=61 Identities=11% Similarity=0.117 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhC-CHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 100 HLAKSLFYIQIG-DKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 100 ~~~la~~~~~~G-d~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
+...|.+-+.+| +++.|.++|.+..+.|.... ++.+..+...+..|+...+....++|-..
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~---~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKYFATDG---EYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCch---HHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 445565555554 36777777777666654332 23334444555556777776666665543
No 378
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=42.83 E-value=45 Score=25.67 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEec
Q 016653 290 YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDK 345 (385)
Q Consensus 290 ~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~ 345 (385)
.+.+..|.+++..+.. ...+...+|+.+|+|...+-+.|..|...|-+..+-|.
T Consensus 17 aL~~~~r~~IL~~L~~--~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 17 ALADPTRCRILVALLD--GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEG 70 (118)
T ss_dssp HHSSHHHHHHHHHHHT--TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECS
T ss_pred HhCCHHHHHHHHHHHc--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEEC
Confidence 3444555555554432 35788999999999999999999999999999776553
No 379
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=42.69 E-value=35 Score=27.07 Aligned_cols=47 Identities=9% Similarity=0.196 Sum_probs=35.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC---EEEEc
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG---VLETN 353 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g---iv~~~ 353 (385)
+..++.+.+|+.+|++...+-+.|.+|...|-|.-+-|..++ .|..+
T Consensus 53 ~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT 102 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLT 102 (149)
T ss_dssp SSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEEC
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeEC
Confidence 477999999999999999999999999999999777665554 44444
No 380
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=42.63 E-value=87 Score=23.73 Aligned_cols=55 Identities=7% Similarity=0.200 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHh-CCChHHHHHHHHHHHhCCccceEEe
Q 016653 290 YYMREVRTVVYSQFLESYKSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKID 344 (385)
Q Consensus 290 ~l~~~iR~~~~~qy~~pY~~I~l~~mA~~f-g~s~~~iE~~L~~lI~~g~l~akID 344 (385)
.+-+.-|..++.....--.+++.+.+++.+ |+|...+-+.|..|-..|-+.-+.+
T Consensus 23 ~l~~~wrl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 23 LLGKKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp HHHSTTHHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred HHcCccHHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 334444555555443322335599999999 9999999999999999999998887
No 381
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=42.07 E-value=89 Score=23.35 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=38.1
Q ss_pred cccccHHHHHHHh-CCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 307 YKSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 307 Y~~I~l~~mA~~f-g~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
....+.+.+|+.+ |++...+-..|.+|...|-+.-+.|..++.
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r 79 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPP 79 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 4678999999999 599999999999999999999888876653
No 382
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=42.06 E-value=2.5e+02 Score=27.31 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 99 AHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 99 a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
.+..+-.-|++.|+.++|.+.+.++.+.-..++. ..+-.+|..+.-.|+++.|...+.+.++.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~--~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEE--PELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 4555666667777777777777776654433332 24455566666667777777666666553
No 383
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=41.80 E-value=1.3e+02 Score=23.68 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=38.8
Q ss_pred cccccHHHHHHHh-CCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 307 YKSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 307 Y~~I~l~~mA~~f-g~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
....+.+.||+.+ |++..-+-+.|.+|...|-|.-+.|..++-
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r 89 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPP 89 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSC
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCC
Confidence 5678999999999 799999999999999999999888876653
No 384
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=41.75 E-value=79 Score=26.07 Aligned_cols=41 Identities=15% Similarity=0.243 Sum_probs=33.7
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
.++...||+.+|+|.+.+-+.+.+|..+|-|. ...|.|...
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~ 204 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVH----VKGKTMVVF 204 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEEE
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEE
Confidence 58899999999999999999999999998763 234555554
No 385
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=41.35 E-value=44 Score=26.11 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=34.6
Q ss_pred HHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccce
Q 016653 301 SQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 301 ~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a 341 (385)
..+.+....++++.+|+.+|++...+-+.|.+|...|-+.-
T Consensus 23 ~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 23 KRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp HHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 33444567899999999999999999999999999987653
No 386
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=41.19 E-value=54 Score=27.11 Aligned_cols=34 Identities=12% Similarity=0.039 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHhhhcc
Q 016653 96 VREAHLAKSLFYIQIG-----------DKEKALEQLKVTESKTVA 129 (385)
Q Consensus 96 ir~a~~~la~~~~~~G-----------d~~~A~~~~~~~~~~~~~ 129 (385)
--++++.+|..|.+.| ++++|.++|.+..+.-.+
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 3578999999999875 899999999998876543
No 387
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=41.13 E-value=45 Score=27.73 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHH
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFY 139 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~ 139 (385)
..+...|+|-.+.|++..|.+.+.+....|..+.+.+++.+.
T Consensus 95 Kiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~ 136 (161)
T 4h7y_A 95 FVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALR 136 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 345566666666666666666666666666555555544443
No 388
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=41.01 E-value=40 Score=26.72 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=34.2
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-..|..++
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccC
Confidence 567999999999999999999999999999999776655444
No 389
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=40.00 E-value=43 Score=25.04 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=21.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHH
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~ 332 (385)
...++++.||+.+|+|+..+.+...+
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 35699999999999999988777655
No 390
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=39.26 E-value=32 Score=26.73 Aligned_cols=43 Identities=5% Similarity=0.015 Sum_probs=37.4
Q ss_pred HHHhccccccccHHHHHHHh--CCChHHHHHHHHHHHhCCccceE
Q 016653 300 YSQFLESYKSVTIEAMAKAF--GVTVEFIDVELSRFIAAGKLHCK 342 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~f--g~s~~~iE~~L~~lI~~g~l~ak 342 (385)
+..++.....++...||+.+ |+|...+-+.|..|...|-|...
T Consensus 18 IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 18 ILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp HHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 34555556799999999999 99999999999999999999874
No 391
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=39.25 E-value=35 Score=28.05 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=31.3
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccce-EEecCCCEEEEc
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC-KIDKVAGVLETN 353 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a-kID~~~giv~~~ 353 (385)
.-+++..+|+.||++... +-++|.+|+|-| |++ +...+.
T Consensus 30 ~~LTv~EVAe~LgVs~sr----V~~LIr~G~L~AVr~G---r~~rVP 69 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSK----VAQQLREGHLVAVRRA---GGVVIP 69 (148)
T ss_dssp CEEEHHHHHHHHTCCHHH----HHHHHHTTSCCCEEET---TEEEEE
T ss_pred ceEcHHHHHHHhCCCHHH----HHHHHHCCCceEEEEC---CEEEec
Confidence 567899999999999876 567899999988 885 555443
No 392
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=39.17 E-value=51 Score=22.46 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=24.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
+.-.+...+|+.+|+|+..+...+.+...
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45569999999999999999998887654
No 393
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=38.60 E-value=63 Score=25.45 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=33.8
Q ss_pred ccccccHHHHHHHhCCChHHHHHHHHHHHhCCccce--EEecCCC
Q 016653 306 SYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC--KIDKVAG 348 (385)
Q Consensus 306 pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a--kID~~~g 348 (385)
....++.+.+|+.+|++...+-+.|.+|...|-+.- ..|..++
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~ 92 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQ 92 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC---------
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCC
Confidence 568899999999999999999999999999999876 3365555
No 394
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=38.29 E-value=70 Score=24.27 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=35.6
Q ss_pred HHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceE
Q 016653 296 RTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCK 342 (385)
Q Consensus 296 R~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ak 342 (385)
|.+++..+.+ ...++..+|+.+|+|...+-+.|..|...|-+.-.
T Consensus 34 ~~~il~~L~~--~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 34 RLMILTQLRN--GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp HHHHHHHHHH--CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHHHH--CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 4444444433 46899999999999999999999999998877553
No 395
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=38.24 E-value=1.5e+02 Score=23.86 Aligned_cols=47 Identities=13% Similarity=0.088 Sum_probs=35.6
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC---EEEEc
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG---VLETN 353 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g---iv~~~ 353 (385)
...++.+.||+.+|++...+-+.|.+|...|-|.-.-|..++ .|..+
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT 115 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLT 115 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEEC
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEEC
Confidence 346999999999999999999999999999999877655544 45444
No 396
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=37.83 E-value=64 Score=21.86 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=25.9
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
+.-.+...+|+.+|+|+..+...+.+.+.
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47889999999999999999999888765
No 397
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=37.62 E-value=50 Score=23.89 Aligned_cols=27 Identities=11% Similarity=-0.007 Sum_probs=23.2
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHH
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFI 334 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI 334 (385)
...++..+|..||++..-+-+|+.++=
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 357899999999999999999987653
No 398
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=37.32 E-value=36 Score=25.53 Aligned_cols=25 Identities=8% Similarity=0.126 Sum_probs=21.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHH
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~ 332 (385)
..++++.||+.+|+|+..+.+...+
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 5799999999999999988777655
No 399
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=37.05 E-value=37 Score=28.76 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=30.1
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHHhCCccce
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a 341 (385)
..++..||+.||++...+-+.|..|-..|-|.-
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~ 56 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIER 56 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEe
Confidence 489999999999999999999999999998843
No 400
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=37.00 E-value=1.9e+02 Score=24.52 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=36.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRPD 356 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~d 356 (385)
-.++-..||+.+|++.+.+-+.+.+|..+|-|. ...|.|...+++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~d~~ 236 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMIS----IHKKKITVHKPV 236 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEECC--
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEE----EcCCEEEECCHH
Confidence 457889999999999999999999999998775 335777776553
No 401
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=36.94 E-value=78 Score=22.95 Aligned_cols=48 Identities=13% Similarity=0.105 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCcc
Q 016653 292 MREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 339 (385)
Q Consensus 292 ~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l 339 (385)
...+..+++.-+=+.=+-++-..+|+..|++-.++.+.|-+|=.+|+|
T Consensus 17 ~~d~eekVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI 64 (80)
T 2lnb_A 17 EGHLEQRILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKV 64 (80)
T ss_dssp HHHHHHHHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSE
T ss_pred cchHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 344555555555555678999999999999999999999999998886
No 402
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=36.85 E-value=1e+02 Score=21.62 Aligned_cols=44 Identities=18% Similarity=0.211 Sum_probs=36.4
Q ss_pred HHHHHhcccc--ccccHHHHHHHh-----CCChHHHHHHHHHHHhCCccce
Q 016653 298 VVYSQFLESY--KSVTIEAMAKAF-----GVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 298 ~~~~qy~~pY--~~I~l~~mA~~f-----g~s~~~iE~~L~~lI~~g~l~a 341 (385)
..+.+++... ..++.+.+++.+ ++|..-+-+.|..|...|-+.-
T Consensus 20 ~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 20 LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 3455555544 579999999999 9999999999999999998863
No 403
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=36.72 E-value=1.9e+02 Score=24.29 Aligned_cols=29 Identities=10% Similarity=-0.160 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 016653 98 EAHLAKSLFYIQIGDKEKALEQLKVTESK 126 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd~~~A~~~~~~~~~~ 126 (385)
.-+.+||+.-...|+++-|.+||.++.+.
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 45888999999999999999999887765
No 404
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=36.06 E-value=1.3e+02 Score=22.37 Aligned_cols=46 Identities=7% Similarity=0.016 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhcc--chhHHHhHHHHHH
Q 016653 97 REAHLAKSLFYIQIGDKEKALEQLKVTESKTVA--VGQKMDLVFYTLQ 142 (385)
Q Consensus 97 r~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~--~~~~id~~l~~i~ 142 (385)
.+...+-|+-+++.|+|.+|+-.+.++...+.. .+...+.+++..|
T Consensus 53 ~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~ 100 (106)
T 2vkj_A 53 ARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECR 100 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHH
Confidence 456778899999999999999999988754422 2344456665544
No 405
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=35.82 E-value=39 Score=31.70 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=36.0
Q ss_pred HhccccccccHHHHHHHh--CCChHHHHHHHHHHHhCCccc
Q 016653 302 QFLESYKSVTIEAMAKAF--GVTVEFIDVELSRFIAAGKLH 340 (385)
Q Consensus 302 qy~~pY~~I~l~~mA~~f--g~s~~~iE~~L~~lI~~g~l~ 340 (385)
.|++....|+...+|+.| |+|++-+-+++..|=..|.|.
T Consensus 29 ~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~ 69 (338)
T 1stz_A 29 EYIENKKPVSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIY 69 (338)
T ss_dssp HHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 388889999999999999 999999999999999998874
No 406
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=35.77 E-value=36 Score=26.70 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=36.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|++...+-+.|.+|...|-+.-..|..++
T Consensus 52 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 52 HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDE 93 (147)
T ss_dssp HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCT
T ss_pred CCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCC
Confidence 457999999999999999999999999999988776665444
No 407
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=35.67 E-value=1.7e+02 Score=25.04 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=34.9
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
-.++-..||..+|+|.+.+-+.+.+|..+|-|. ...|.|...
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~ 217 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILD----KKKNKIIVY 217 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEES
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeE----eCCCEEEEe
Confidence 467999999999999999999999999988663 345666665
No 408
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=35.65 E-value=50 Score=31.39 Aligned_cols=41 Identities=15% Similarity=0.086 Sum_probs=33.7
Q ss_pred HHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc
Q 016653 300 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 340 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ 340 (385)
+.+++...-.++++.+++.+|+|...+.+.|.+|+..|-|.
T Consensus 302 ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~ 342 (373)
T 3eqx_A 302 LVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLE 342 (373)
T ss_dssp HHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEE
Confidence 33444334458899999999999999999999999999885
No 409
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=35.50 E-value=68 Score=27.25 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=34.1
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
.++-+.||..+|++.+.+-+.+.+|..+| | . ...|.|...++
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~--~~~~~i~I~d~ 219 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAG-V--T--VKRNHAEIEDI 219 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--E--CCTTEEEESCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--E--eeCCEEEEcCH
Confidence 35578999999999999999999999999 6 3 34577777643
No 410
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=35.36 E-value=45 Score=31.67 Aligned_cols=46 Identities=7% Similarity=0.082 Sum_probs=39.3
Q ss_pred HHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCcc
Q 016653 294 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 339 (385)
Q Consensus 294 ~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l 339 (385)
....+.+.+++.....++-..+|+.+|+|...+-+-+.+|+..|-+
T Consensus 15 ~~n~~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i 60 (406)
T 1z6r_A 15 QTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLV 60 (406)
T ss_dssp HHHHHHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HhHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
Confidence 3444456777778899999999999999999999999999998866
No 411
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=35.20 E-value=66 Score=23.99 Aligned_cols=27 Identities=4% Similarity=0.289 Sum_probs=22.6
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHH
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRF 333 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~l 333 (385)
...++++.||+.+|+|+..+.+...+.
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 357999999999999999888777653
No 412
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=35.13 E-value=74 Score=23.44 Aligned_cols=25 Identities=4% Similarity=0.340 Sum_probs=21.5
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHH
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRF 333 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~l 333 (385)
.++++.+|+.+|+|+..+.+.+.+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6899999999999999887777553
No 413
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=34.81 E-value=52 Score=31.16 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=30.0
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHHhCCccce
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a 341 (385)
.++++.+++.+|+|..-+.+.|..|...|-|.-
T Consensus 311 ~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~ 343 (373)
T 2qc0_A 311 YCRIQNLVESGLAKRQTASVYLKQLCDIGVLEE 343 (373)
T ss_dssp EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEE
Confidence 467889999999999999999999999998863
No 414
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.44 E-value=73 Score=21.91 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=24.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
.-.+...+|+.+|+|+..+...+.+.+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5789999999999999999988877653
No 415
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=34.37 E-value=1.6e+02 Score=22.68 Aligned_cols=86 Identities=17% Similarity=0.020 Sum_probs=61.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHH----hcCHHHHHhHHHHHHHHHhcCCChhhhhhhhH
Q 016653 103 KSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFF----YMDFDLISKSIDKAKSLFEEGGDWERKNRLKV 178 (385)
Q Consensus 103 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~----~~~~~~~~~~i~ka~~~~~~~~~~~~~~~l~~ 178 (385)
||.+|..-+..++|.++|.+..+. ...+.+..+-.+... .+|+..+...+.+|-.. +++.-..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-----g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~a~~---- 97 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-----NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----NDQDGCL---- 97 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHH----
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CCHHHHH----
Confidence 999999999999999999988654 123455555555555 67899998888887653 3443222
Q ss_pred HHHHhccc----cCCHHHHHHHHHhcc
Q 016653 179 YEGLYCMS----TRNFKKAASLFLDSI 201 (385)
Q Consensus 179 ~~gl~~l~----~r~~~~Aa~~f~e~~ 201 (385)
.-|.++.. .+|+.+|..+|-.+.
T Consensus 98 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 98 ILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 23445555 899999999988764
No 416
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=34.25 E-value=1.1e+02 Score=24.58 Aligned_cols=42 Identities=10% Similarity=0.201 Sum_probs=38.0
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
....+++.+++.+|+|..-+-+.|.+|...|-|.-+.+..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 457899999999999999999999999999999988876665
No 417
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=34.20 E-value=56 Score=27.00 Aligned_cols=45 Identities=16% Similarity=0.114 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHHhccccc--cccHHHHHHHhCCChHHHHHHHH
Q 016653 287 HFRYYMREVRTVVYSQFLESYK--SVTIEAMAKAFGVTVEFIDVELS 331 (385)
Q Consensus 287 h~~~l~~~iR~~~~~qy~~pY~--~I~l~~mA~~fg~s~~~iE~~L~ 331 (385)
+...+-..++..+..+++-|+. .+++..+|+.+|+|..-+-+|..
T Consensus 24 yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 24 LTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp SCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 3455666666666668876666 59999999999999999888876
No 418
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=34.12 E-value=74 Score=21.28 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=24.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
+.-.+...+|+.+|+|+..+...+.+...
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARARD 57 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45678999999999999999888877543
No 419
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=34.12 E-value=67 Score=29.43 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=35.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKV 346 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~ 346 (385)
...++.+.+|+.||+|..-+-+.|..+-..|.+.=+|...
T Consensus 19 ~~~~~~~ela~~l~vS~~tIrRdL~~l~~~G~v~iri~g~ 58 (315)
T 2w48_A 19 EQDMTQAQIARELGIYRTTISRLLKRGREQGIVTIAINYD 58 (315)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEecCC
Confidence 5779999999999999999999999999999988666543
No 420
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=34.09 E-value=3.4e+02 Score=26.41 Aligned_cols=99 Identities=6% Similarity=0.103 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH-HhhhccchhHHHhHHHHH
Q 016653 65 VLDSMRTKIEDELKKLDDRIADAEENL--GESEVREAHLAKSLFYIQIGDKEKALEQLKVT-ESKTVAVGQKMDLVFYTL 141 (385)
Q Consensus 65 ~~~~~~~~~~~~l~~Le~~l~~~~~n~--~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~-~~~~~~~~~~id~~l~~i 141 (385)
.+.+..+.+...+++|...|.++..+. +..-++.....+..-+.+.+|.++...-|..- +....-.+.+++.-+ -
T Consensus 55 lL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi--~ 132 (491)
T 1m1j_A 55 IIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQV--N 132 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 377888888999999999999886433 34455666777777788888888888777653 333344556666666 4
Q ss_pred HHHHHhcCHHHHHhHHHHHHHHHh
Q 016653 142 QLGFFYMDFDLISKSIDKAKSLFE 165 (385)
Q Consensus 142 ~~~i~~~~~~~~~~~i~ka~~~~~ 165 (385)
++.++.++.......|.|++..|+
T Consensus 133 ~IrvLq~~l~~q~skIQRLE~dI~ 156 (491)
T 1m1j_A 133 RIKALQNSIQEQVVEMKRLEVDID 156 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777778888877665
No 421
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=33.98 E-value=49 Score=31.76 Aligned_cols=47 Identities=9% Similarity=0.094 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCcc
Q 016653 293 REVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 339 (385)
Q Consensus 293 ~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l 339 (385)
+....+.+.+++.....++-..+|+.+|+|..-+-+-+.+|+..|-+
T Consensus 37 r~~n~~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli 83 (429)
T 1z05_A 37 KQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLI 83 (429)
T ss_dssp HHHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 33444446677777899999999999999999999999999999866
No 422
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=33.74 E-value=2.2e+02 Score=26.67 Aligned_cols=73 Identities=15% Similarity=0.034 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhc--CCCh
Q 016653 95 EVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEE--GGDW 170 (385)
Q Consensus 95 ~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~--~~~~ 170 (385)
....+...+++.+...|++.+|...+..+.....-. -..+-.+|+.....|+...+...+.+++..+.. |.+|
T Consensus 169 ~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~---E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 169 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR---EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344567888999999999999999888765433211 236677788888889999999999999998643 4444
No 423
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=33.67 E-value=32 Score=27.17 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=31.3
Q ss_pred ccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEe
Q 016653 310 VTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 344 (385)
Q Consensus 310 I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID 344 (385)
++.+.||+.+|+|+..+.+.|..|+..|-|.=+-|
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~ 86 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEH 86 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeE
Confidence 79999999999999999999999999998865444
No 424
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=33.43 E-value=1.6e+02 Score=23.18 Aligned_cols=71 Identities=8% Similarity=0.065 Sum_probs=51.6
Q ss_pred cccccHHHHHHHh-CCChHHHHHHHHHHHhCCccceEEecCCCE--EEEcCCC--chhHHHHHHHHhhHHHHHHHH
Q 016653 307 YKSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDKVAGV--LETNRPD--AKNALYQATIKQGDFLLNRIQ 377 (385)
Q Consensus 307 Y~~I~l~~mA~~f-g~s~~~iE~~L~~lI~~g~l~akID~~~gi--v~~~~~d--~~~~~y~~~i~~g~~l~~r~q 377 (385)
....+++.|++.+ |+|...+-+.|.+|..+|-+.=+.+...+. .+.-.+. .-......+.++|+.....+.
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~~~~~~~ 112 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESNRDVLE 112 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999 999999999999999999998877776542 2222121 222456666677766665554
No 425
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=33.41 E-value=73 Score=21.68 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=31.3
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccce
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a 341 (385)
=+-.+-...|..||+|.+..-..|.+|..+|.|.-
T Consensus 16 ~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 16 RQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred hccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 35678899999999999999999999999999853
No 426
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=33.35 E-value=37 Score=26.79 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=27.2
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEE
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVL 350 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv 350 (385)
..++.+.+|+.+|++...+-..|.+|...|-+.-.-|..++-.
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~ 98 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQ 98 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchh
Confidence 6799999999999999999999999999999987776666543
No 427
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=33.32 E-value=68 Score=24.19 Aligned_cols=43 Identities=12% Similarity=0.251 Sum_probs=32.9
Q ss_pred HHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCcc
Q 016653 294 EVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 339 (385)
Q Consensus 294 ~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l 339 (385)
+.|.+++.-+. ...+...+|..||+|...+-+|+.++-..|.+
T Consensus 21 ~~r~~i~~~~~---~g~s~~~ia~~lgis~~Tv~~w~~~~~~~g~~ 63 (128)
T 1pdn_C 21 NIRLKIVEMAA---DGIRPCVISRQLRVSHGCVSKILNRYQETGSI 63 (128)
T ss_dssp HHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHHHhhCCc
Confidence 34455554442 45788999999999999999999998777754
No 428
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=32.94 E-value=45 Score=24.18 Aligned_cols=26 Identities=12% Similarity=0.139 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Q 016653 100 HLAKSLFYIQIGDKEKALEQLKVTES 125 (385)
Q Consensus 100 ~~~la~~~~~~Gd~~~A~~~~~~~~~ 125 (385)
..++|+=|.-.|+|+.|..+|..+.+
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 46778889999999999999987653
No 429
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=32.42 E-value=1.6e+02 Score=22.11 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=37.9
Q ss_pred ccccHHHHHHHh-CCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 308 KSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 308 ~~I~l~~mA~~f-g~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
..++...||+.+ |++...+-..|.+|...|-|.-+.|..++-
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 568999999999 999999999999999999999888876653
No 430
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.35 E-value=38 Score=24.13 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=25.6
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCcc
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 339 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l 339 (385)
+.-.+..||..+|++.+.|..|..+.=. |++
T Consensus 31 s~eei~~LA~~lgL~~~VVrVWFqNrRa-~~~ 61 (71)
T 2da7_A 31 NSDELLKISIAVGLPQEFVKEWFEQRKV-YQY 61 (71)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHHHHHHH-HHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHhhccc-ccc
Confidence 5567999999999999999999998643 444
No 431
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.29 E-value=1.7e+02 Score=22.84 Aligned_cols=49 Identities=12% Similarity=-0.043 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 016653 72 KIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTE 124 (385)
Q Consensus 72 ~~~~~l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~ 124 (385)
+..++++.|-..|+ ++....++...+..++.- .+.|||+.|.+....+.
T Consensus 40 D~~KRL~~LfdkLn---~~~Ls~~v~~~L~~l~~a-l~~~dy~~A~~ih~~l~ 88 (118)
T 2yru_A 40 DISRRLALLREQWA---GGKLSIPVKKRMALLVQE-LLHHQWDAADDIHRSLM 88 (118)
T ss_dssp HHHHHHHHHHHHHH---HTCSCHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence 45567777777777 555678888889999885 46679999999886654
No 432
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=31.99 E-value=18 Score=25.60 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=20.6
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHH
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFI 334 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI 334 (385)
.-.+..+|+.||++++++-.++...|
T Consensus 54 ~~~~~~ia~~l~v~~~~l~~~l~~~~ 79 (80)
T 3kz3_A 54 AYNAALLAKILKVSVEEFSPSIAREI 79 (80)
T ss_dssp HHHHHHHHHHHTSCGGGTCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHhHHHHhhC
Confidence 34577889999999998888887765
No 433
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=31.93 E-value=62 Score=23.31 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=24.7
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
.-.+...+|+.+|+|+..+...+.+.+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999998887664
No 434
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=31.82 E-value=67 Score=23.64 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=25.8
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
+.-.+...+|+.+|+|+..+...+.+...
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67789999999999999999999888765
No 435
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=31.56 E-value=1.2e+02 Score=25.85 Aligned_cols=43 Identities=7% Similarity=0.108 Sum_probs=35.3
Q ss_pred cccHHHHHHHhCCCh-HHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 309 SVTIEAMAKAFGVTV-EFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~-~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
.++-..||+.+|+|. +.+-+.+.+|..+|-|. ...|.|...++
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~----~~~~~i~I~d~ 212 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIV----YKNSCFYVQNL 212 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 678899999999999 89999999999988763 34567777643
No 436
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=31.54 E-value=1e+02 Score=24.73 Aligned_cols=42 Identities=10% Similarity=-0.033 Sum_probs=35.4
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
..++.+.||+.+|++...+-..|.+|...|-|.-+-|..++-
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 102 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRR 102 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCC
Confidence 479999999999999999999999999999999888887763
No 437
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.29 E-value=78 Score=22.51 Aligned_cols=29 Identities=10% Similarity=0.277 Sum_probs=25.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
+.-.+.+.+|+.+|+|+..+...+.+...
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 57789999999999999999999887665
No 438
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=31.28 E-value=1.9e+02 Score=22.76 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=28.4
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
..++.+.+|+.+|++...+-..|.+|...|=+. +.|..++
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~Dr 90 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADA 90 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC--------
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCC
Confidence 458999999999999999999999999999873 5565555
No 439
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.99 E-value=1.2e+02 Score=28.15 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhc
Q 016653 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYM 148 (385)
Q Consensus 93 ~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~ 148 (385)
.+++......+-+=|+..||.++|..|+.++.. +...-.++-..+..++..+
T Consensus 7 ~ee~~k~~~~ll~Ey~~~~d~~Ea~~ci~el~~----p~~~~~~v~~~i~~~le~~ 58 (339)
T 1ug3_A 7 EEELEKKSKAIIEEYLHLNDMKEAVQCVQELAS----PSLLFIFVRHGVESTLERS 58 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCC----GGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCC----cccHHHHHHHHHHHHhCCC
Confidence 445555556666679999999999999977642 2233344555555555543
No 440
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=30.76 E-value=16 Score=34.65 Aligned_cols=42 Identities=14% Similarity=0.132 Sum_probs=37.5
Q ss_pred HHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccc
Q 016653 298 VVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLH 340 (385)
Q Consensus 298 ~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~ 340 (385)
+.+.+++. ...++-..+|+.+|+|..-+-+-+.+|+.+|-+.
T Consensus 23 ~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 23 SRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp CCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 34677788 8999999999999999999999999999998763
No 441
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=30.50 E-value=83 Score=21.71 Aligned_cols=29 Identities=10% Similarity=0.228 Sum_probs=25.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
+.-.+...+|+.+|+|+..+...+.+...
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 57789999999999999999998888665
No 442
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=30.33 E-value=63 Score=24.15 Aligned_cols=44 Identities=30% Similarity=0.243 Sum_probs=32.0
Q ss_pred HHHHHHHHhcccc---cc--ccHHHHHHHhCCChHHHHHHHHHHHhCCc
Q 016653 295 VRTVVYSQFLESY---KS--VTIEAMAKAFGVTVEFIDVELSRFIAAGK 338 (385)
Q Consensus 295 iR~~~~~qy~~pY---~~--I~l~~mA~~fg~s~~~iE~~L~~lI~~g~ 338 (385)
.+..++..+++.- .+ .++..+|..||+++..+-.|+...-.+|.
T Consensus 11 ~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 11 VRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHHHHhccc
Confidence 3445555554421 11 68899999999999999999999876653
No 443
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=30.24 E-value=8.1 Score=31.97 Aligned_cols=49 Identities=10% Similarity=0.133 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccce
Q 016653 292 MREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHC 341 (385)
Q Consensus 292 ~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~a 341 (385)
++.++.+++. .+.|-..++...+|+.||+|..-+-+.+.+|..+|-+..
T Consensus 11 ~d~l~~~Il~-~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 11 LDRIDRNILN-ELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp CCSHHHHHHH-HHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred hhHHHHHHHH-HHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 3455566666 778899999999999999999999999999999998864
No 444
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=30.07 E-value=1e+02 Score=24.98 Aligned_cols=52 Identities=6% Similarity=-0.045 Sum_probs=45.3
Q ss_pred cccc-ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 304 LESY-KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 304 ~~pY-~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
+-.| +-||-..+++.|+++..-.-+-|..|-..|-|.-..-.....|++..+
T Consensus 57 Vpk~gKlITpsvlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTra~ 109 (143)
T 2xzm_8 57 PSKVGKVLTVSTVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSVIG 109 (143)
T ss_dssp CTTSCSEECHHHHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEETT
T ss_pred hcccceeecHHHHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEecCC
Confidence 4568 999999999999999999999999999999998887777777777643
No 445
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=30.06 E-value=40 Score=21.27 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=20.3
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHH
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRF 333 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~l 333 (385)
.+++..+|+.+|++++.+-+.+..+
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 4678899999999999887766653
No 446
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=29.92 E-value=1e+02 Score=24.09 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=31.8
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
..++.+.||+.+|++...+-+.|.+|...|-+.-.-|..++
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDR 93 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCcccc
Confidence 35899999999999999999999999999999776666655
No 447
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=29.76 E-value=14 Score=33.02 Aligned_cols=63 Identities=10% Similarity=0.142 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHHHHHhccccccc-cHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEE
Q 016653 288 FRYYMREVRTVVYSQFLESYKSV-TIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLET 352 (385)
Q Consensus 288 ~~~l~~~iR~~~~~qy~~pY~~I-~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~ 352 (385)
...+++.++.++...-+.|=..+ +...||+.||+|..-+-+-|..|..+|-|..+ +..|+...
T Consensus 18 ~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~ 81 (247)
T 2ra5_A 18 YFQLSQQLEAAIEHGALTPGSLLGNEIELAARLGLSRPTVRQAIQSLVDKGLLVRR--RGVGTQVV 81 (247)
T ss_dssp --------------------------------------------------CEEEEE--C-------
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--cCceeEEe
Confidence 45677788888888888888999 89999999999999999999999999988543 44465554
No 448
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=29.68 E-value=76 Score=20.69 Aligned_cols=29 Identities=3% Similarity=0.190 Sum_probs=24.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
..-.+.+.+|+.+|+|+..+...+.+...
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45668899999999999999998887664
No 449
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=29.48 E-value=1.1e+02 Score=24.21 Aligned_cols=64 Identities=9% Similarity=0.158 Sum_probs=43.9
Q ss_pred HHHHHhHHHhhhchhHhHhHHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 269 SAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 269 ~~L~~~~~~l~~D~~l~~h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
+.+..+...+....+--|.........|.+.+.+- |.-.++..+|..+|+|+..+-+-+.+.-.
T Consensus 55 e~~~~L~~~~gG~~iYIPk~~~~~~~~Rn~~I~~~---f~G~n~~eLArkYgLSer~I~~Ii~~~r~ 118 (129)
T 1rr7_A 55 EIVVAICKHLGGGQVYIPRGQALDSLIRDLRIWND---FNGRNVSELTTRYGVTFNTVYKAIRRMRR 118 (129)
T ss_dssp HHHHHHHHHHCSSCCCCCCSHHHHHHHHHHHHHHH---CCSSCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCeeEEeeCCchHHHHHHHHHHHHH---hCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344444455444445555667777888777666 66789999999999998888777765443
No 450
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=29.41 E-value=66 Score=26.45 Aligned_cols=63 Identities=16% Similarity=0.123 Sum_probs=41.3
Q ss_pred CCHHHHHHH-HHH-HHHHHHHHHHHHHH-HHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Q 016653 61 MDQSVLDSM-RTK-IEDELKKLDDRIAD-AEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESK 126 (385)
Q Consensus 61 ~D~~~~~~~-~~~-~~~~l~~Le~~l~~-~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~ 126 (385)
.+.++++-. ..- ++.+.+.|+.-+++ ..++.+..|+ ++++|.-|.+.|+..+|-+.+.++-+.
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~---l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASI---LVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHH---HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHH---HHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 455665422 111 12345566666666 3577777665 789999999999999999998877543
No 451
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=29.33 E-value=77 Score=25.11 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=33.2
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++.+.+|+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 60 ~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~ 101 (160)
T 3boq_A 60 PDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDR 101 (160)
T ss_dssp TTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC------
T ss_pred CCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCC
Confidence 467999999999999999999999999999988765554443
No 452
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=29.27 E-value=28 Score=28.71 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=0.0
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
...++-+.||..+|++++.+-+.+.++|.
T Consensus 166 ~~~~t~~~iA~~lG~sretlsR~l~~l~~ 194 (194)
T 3dn7_A 166 IQRVPQYLLASYLGFTPEYLSEIRKKYIS 194 (194)
T ss_dssp -----------------------------
T ss_pred HHHCCHHHHHHHhCCCHHHHHHHHHhhcC
Confidence 45678899999999999999888887763
No 453
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=29.17 E-value=1.7e+02 Score=21.59 Aligned_cols=37 Identities=14% Similarity=0.297 Sum_probs=32.0
Q ss_pred ccchHHhHHHHHHHHHHhCCCHHHHHHHHHhcCCCCC
Q 016653 26 QDIEKVGLKGEVFSMVKAHDMASFYETLVAESVLEMD 62 (385)
Q Consensus 26 ~~~~~~~~~~~~~~~ik~~~m~~~y~~~~~~~~~~~D 62 (385)
++-+.+++..++++++...+...-+..+.++++++.+
T Consensus 6 t~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 6 SQRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 4457789999999999999999999999999887765
No 454
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=28.69 E-value=1.7e+02 Score=21.19 Aligned_cols=63 Identities=8% Similarity=-0.090 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhCC---HHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHH
Q 016653 98 EAHLAKSLFYIQIGD---KEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSL 163 (385)
Q Consensus 98 ~a~~~la~~~~~~Gd---~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~ 163 (385)
..+..+|..++-.|+ .++|...+.+....-.. -....+.+-...+..|+|..+.....++-..
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345666777765554 67888887777654321 1223333445556677777777666665443
No 455
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=28.52 E-value=2.2e+02 Score=22.51 Aligned_cols=41 Identities=15% Similarity=0.128 Sum_probs=37.2
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
..++.+.+|+.+|++...+-..|.+|...|=+.=.-|..++
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 35677899999999999999999999999999988888887
No 456
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=28.41 E-value=71 Score=21.07 Aligned_cols=21 Identities=19% Similarity=0.161 Sum_probs=19.0
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q 016653 312 IEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 312 l~~mA~~fg~s~~~iE~~L~~ 332 (385)
+..+|..||+++..+-+|+..
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHHH
Confidence 899999999999999999754
No 457
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=28.38 E-value=1.6e+02 Score=25.23 Aligned_cols=51 Identities=10% Similarity=0.045 Sum_probs=40.4
Q ss_pred HHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 300 YSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 300 ~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
+....+....++.+.+|+.+|++...+-+.|.+|...|-+.-.=| +.|..+
T Consensus 11 I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~i~LT 61 (214)
T 3hrs_A 11 LYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDKK---AGYLLT 61 (214)
T ss_dssp HHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETT---TEEEEC
T ss_pred HHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEecC---CCeEEC
Confidence 344455677899999999999999999999999999998865422 555554
No 458
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=28.22 E-value=86 Score=24.80 Aligned_cols=44 Identities=16% Similarity=0.234 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCcc
Q 016653 293 REVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKL 339 (385)
Q Consensus 293 ~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l 339 (385)
.+.|.+++..+. .-.+...+|..||+|...+-+|+.++-..|.+
T Consensus 35 ~e~r~~iv~~~~---~G~s~~~iA~~lgis~~TV~rw~~~~~~~G~~ 78 (149)
T 1k78_A 35 DVVRQRIVELAH---QGVRPCDISRQLRVSHGCVSKILGRYYETGSI 78 (149)
T ss_dssp HHHHHHHHHHHH---TTCCHHHHHHHHTCCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHH---cCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 344555555552 45788999999999999999999998877754
No 459
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=28.05 E-value=51 Score=26.33 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=23.6
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHH
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~ 332 (385)
|-+.+++.+|..+|++.+++|+.+..
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~ 62 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQK 62 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88899999999999999999987754
No 460
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=27.99 E-value=43 Score=20.86 Aligned_cols=18 Identities=22% Similarity=0.397 Sum_probs=14.9
Q ss_pred cHHHHHHHhCCChHHHHH
Q 016653 311 TIEAMAKAFGVTVEFIDV 328 (385)
Q Consensus 311 ~l~~mA~~fg~s~~~iE~ 328 (385)
++..+|+.||++.+.+.+
T Consensus 12 tl~~Ia~~~~~~~~~l~~ 29 (48)
T 1e0g_A 12 SLSSIAKRHGVNIKDVMR 29 (48)
T ss_dssp CHHHHHHHHTCCHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHH
Confidence 688999999999877644
No 461
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.76 E-value=74 Score=23.04 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=25.7
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
+.-.+...+|+.+|+|+..+...+.+...
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56789999999999999999999988765
No 462
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=27.59 E-value=93 Score=22.91 Aligned_cols=52 Identities=8% Similarity=0.180 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEe
Q 016653 291 YMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKID 344 (385)
Q Consensus 291 l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID 344 (385)
+.+..|.+++...+. ....+...+|+.+|+|...+-..|..|-.. -+..+-+
T Consensus 24 L~~~~Rl~IL~~l~~-~~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 24 MAHPMRLKIVNELYK-HKALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp HCSHHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred hCCHHHHHHHHHHHH-CCCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 334455555544432 356899999999999999999999999988 7776654
No 463
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=27.45 E-value=76 Score=23.87 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=22.0
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHH
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~ 332 (385)
...++++.||+.+|+|+..+.+.+.+
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35699999999999999988777765
No 464
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=27.19 E-value=45 Score=25.07 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=30.9
Q ss_pred HHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHHhCCc
Q 016653 297 TVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGK 338 (385)
Q Consensus 297 ~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~ 338 (385)
..++..++. -.+++...|..||++++.+..|...+-..|.
T Consensus 39 l~VV~~~~~--g~~s~~e~arry~Is~s~i~~W~r~~~~~G~ 78 (95)
T 2jrt_A 39 AAVVKAVIH--GLITEREALDRYSLSEEEFALWRSAVAAHGE 78 (95)
T ss_dssp HHHHHHHHT--TSSCHHHHHHHTTCCHHHHHHHHHHTTTCCT
T ss_pred HHHHHHHHc--CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhH
Confidence 344555543 4678899999999999999999998766663
No 465
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=26.90 E-value=74 Score=24.67 Aligned_cols=27 Identities=7% Similarity=0.115 Sum_probs=22.2
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHH
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRF 333 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~l 333 (385)
...++++.+|+.+|+|+..+.+.+.+.
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 345999999999999999887777553
No 466
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=26.76 E-value=4.3e+02 Score=25.35 Aligned_cols=106 Identities=13% Similarity=0.049 Sum_probs=55.5
Q ss_pred HHHHHhhCHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHhhhc-cchhHHHhHHHHHHHHH-HhcCHHHHHhHHHHHH
Q 016653 85 ADAEENLGESEVREA-HLAKSLFYIQIGDKEKALEQLKVTESKTV-AVGQKMDLVFYTLQLGF-FYMDFDLISKSIDKAK 161 (385)
Q Consensus 85 ~~~~~n~~~~~ir~a-~~~la~~~~~~Gd~~~A~~~~~~~~~~~~-~~~~~id~~l~~i~~~i-~~~~~~~~~~~i~ka~ 161 (385)
+.|++ ...++++.. .++|++.+.+.|+|.+|.-++...-+.+. +....+...... -.. ....|......+.++-
T Consensus 23 ~~y~~-~~~~el~i~~l~~L~~~h~~~~ny~EAa~~l~lhA~l~~w~~~~~~~~~~~~--~~~~~qt~~~~ke~L~~~~i 99 (436)
T 2yin_A 23 NFYKD-NNREEMYIRYLYKLRDLHLDCDNYTEAAYTLLLHTWLLKWSDEQCASQVMQT--GQQHPQTHRQLKETLYETII 99 (436)
T ss_dssp HHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSCCC----------------CHHHHHHHHHHHHH
T ss_pred HHHHh-CCChHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHhCCCccccCcccccC--CCCccccHHHHHHHHHHHHH
Confidence 44554 355666666 78999999999999999999854333321 111112111100 000 0112333444566666
Q ss_pred HHHhcCCChhhhhhhhHHHHH---hccccCCHHHHHH
Q 016653 162 SLFEEGGDWERKNRLKVYEGL---YCMSTRNFKKAAS 195 (385)
Q Consensus 162 ~~~~~~~~~~~~~~l~~~~gl---~~l~~r~~~~Aa~ 195 (385)
...+.|..|+... .+|.-+ +.-..+||..-+.
T Consensus 100 ~~f~kg~~~E~ai--~l~k~L~~~yE~~~~Dy~~Ls~ 134 (436)
T 2yin_A 100 GYFDKGKMWEEAI--SLCKELAEQYEMEIFDYELLSQ 134 (436)
T ss_dssp HHHHHHTCHHHHH--HHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHhcCcHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777787533 233333 2233477866544
No 467
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=26.62 E-value=92 Score=26.47 Aligned_cols=42 Identities=14% Similarity=-0.035 Sum_probs=35.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCC
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAG 348 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~g 348 (385)
...++...||+.+|++...+-+.|.+|...|-|.-.-|..++
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~Dr 101 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDK 101 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC----
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 357999999999999999999999999999999887776665
No 468
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=26.58 E-value=1.7e+02 Score=23.48 Aligned_cols=11 Identities=9% Similarity=0.471 Sum_probs=5.1
Q ss_pred cCHHHHHhHHH
Q 016653 148 MDFDLISKSID 158 (385)
Q Consensus 148 ~~~~~~~~~i~ 158 (385)
||++.+..++.
T Consensus 92 gdY~~Ar~y~d 102 (134)
T 3o48_A 92 GEYSMAKRYVD 102 (134)
T ss_dssp TCHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 45554444443
No 469
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=26.52 E-value=1.1e+02 Score=23.63 Aligned_cols=51 Identities=10% Similarity=0.197 Sum_probs=43.1
Q ss_pred cccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 305 ESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 305 ~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
-.|+-||-..+++.|+++..-.-.-|.+|-..|-|.-..-.....|++..+
T Consensus 55 pk~KlITpsvlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr~~ 105 (108)
T 3u5c_Z 55 PTYRYVSVSVLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTRAT 105 (108)
T ss_dssp SSCSSBSHHHHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEECCC
T ss_pred cCCeEEeHHHhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEecCc
Confidence 448999999999999999999999999999999997776555566776543
No 470
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=26.17 E-value=82 Score=24.02 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHH
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~ 332 (385)
...++++.||+.+|+|+..+.+.+.+
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999988777654
No 471
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=25.66 E-value=74 Score=23.00 Aligned_cols=33 Identities=9% Similarity=0.162 Sum_probs=30.0
Q ss_pred ccccHHHHHHHh-CCChHHHHHHHHHHHhCCccc
Q 016653 308 KSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLH 340 (385)
Q Consensus 308 ~~I~l~~mA~~f-g~s~~~iE~~L~~lI~~g~l~ 340 (385)
+..-+..+++.| +..+-++.+-+..||.+|+|.
T Consensus 20 skfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 20 SKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp SCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 466788999999 999999999999999999984
No 472
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=25.52 E-value=1.4e+02 Score=23.17 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHH
Q 016653 291 YMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 291 l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~ 332 (385)
.....|.....+|+.-...++++.+|..+|+|+..+.+...+
T Consensus 75 ~~~~~~l~~a~~~i~~~~~~sl~~lA~~~g~S~~~f~r~Fk~ 116 (133)
T 1u8b_A 75 QHRLDKITHACRLLEQETPVTLEALADQVAMSPFHLHRLFKA 116 (133)
T ss_dssp HHHHHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 334445555566665357899999999999998877665543
No 473
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=25.28 E-value=1.5e+02 Score=26.20 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=37.4
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
...++++.||+.+|+|...+-+.|..|...|-+.-. ..++.+..+
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEEC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEEC
Confidence 467999999999999999999999999999988764 445555544
No 474
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=25.22 E-value=22 Score=19.63 Aligned_cols=11 Identities=27% Similarity=0.751 Sum_probs=9.2
Q ss_pred HhCCCHHHHHH
Q 016653 42 KAHDMASFYET 52 (385)
Q Consensus 42 k~~~m~~~y~~ 52 (385)
++|+|++||..
T Consensus 5 kQTs~TDFYhs 15 (26)
T 2zvv_Y 5 RQTSMTDFYHS 15 (26)
T ss_pred cccchhHHHhh
Confidence 57899999975
No 475
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=25.21 E-value=15 Score=33.34 Aligned_cols=38 Identities=11% Similarity=0.283 Sum_probs=0.0
Q ss_pred ccccHHHHHHHh-CCChHHHHHHHHHHHhCCccceEEec
Q 016653 308 KSVTIEAMAKAF-GVTVEFIDVELSRFIAAGKLHCKIDK 345 (385)
Q Consensus 308 ~~I~l~~mA~~f-g~s~~~iE~~L~~lI~~g~l~akID~ 345 (385)
.=|+++.|++.| |++++++.+.|-.|+.+|.|...||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 568889999999 79999999999999999999999985
No 476
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=25.07 E-value=58 Score=23.02 Aligned_cols=21 Identities=29% Similarity=0.202 Sum_probs=19.4
Q ss_pred HHHHHHHhCCChHHHHHHHHH
Q 016653 312 IEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 312 l~~mA~~fg~s~~~iE~~L~~ 332 (385)
.+.+|+.+|+|...|-+|+..
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 899999999999999999864
No 477
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.05 E-value=87 Score=23.53 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhhh
Q 016653 100 HLAKSLFYIQIGDKEKALEQLKVTESKT 127 (385)
Q Consensus 100 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~ 127 (385)
+-+.|+-+...|.|++|+++..+...+.
T Consensus 18 ~~RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 18 QSRRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 5677888999999999999998877664
No 478
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=24.86 E-value=1.9e+02 Score=23.87 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCChhh
Q 016653 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGDWER 172 (385)
Q Consensus 93 ~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~~~~ 172 (385)
+++++.....+-+=|+..||.++|..++.++. .+...-.++-..|..++..++-. .+.+.+.-..+-
T Consensus 6 ~ee~~kk~~~ii~EYf~~~D~~Ea~~~l~eL~----~p~~~~~~V~~~I~~aldrk~~e--re~~s~LL~~L~------- 72 (165)
T 2rg8_A 6 ERAFEKTLTPIIQEYFEHGDTNEVAEMLRDLN----LGEMKSGVPVLAVSLALEGKASH--REMTSKLLSDLC------- 72 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHT----CSGGGGHHHHHHHHHHHTSCHHH--HHHHHHHHHHHB-------
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhC----CcccHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHH-------
Confidence 45555555666666999999999999998764 22334445555555565554321 122222211111
Q ss_pred hhhhhHHHHHhccccCCHHHHHHHHHhcccc
Q 016653 173 KNRLKVYEGLYCMSTRNFKKAASLFLDSIST 203 (385)
Q Consensus 173 ~~~l~~~~gl~~l~~r~~~~Aa~~f~e~~~t 203 (385)
. -.+...++.++...+++..+.
T Consensus 73 -------~--~~ls~~~i~~Gf~~lle~ldD 94 (165)
T 2rg8_A 73 -------G--TVMSTTDVEKSFDKLLKDLPE 94 (165)
T ss_dssp -------T--TTBCHHHHHHHHHHHHHHHHH
T ss_pred -------H--CCCCHHHHHHHHHHHHHhChh
Confidence 0 135666777777777776554
No 479
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=24.68 E-value=97 Score=21.40 Aligned_cols=33 Identities=12% Similarity=0.160 Sum_probs=24.4
Q ss_pred HHHhc---cccccc-cHHHHHHHhCCChHHHHHHHHH
Q 016653 300 YSQFL---ESYKSV-TIEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 300 ~~qy~---~pY~~I-~l~~mA~~fg~s~~~iE~~L~~ 332 (385)
++.++ ..|-+. ....||..+|+++..|+-|.-+
T Consensus 15 LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqN 51 (64)
T 1x2m_A 15 LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQ 51 (64)
T ss_dssp HHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444 235444 4889999999999999999754
No 480
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=24.55 E-value=99 Score=26.24 Aligned_cols=44 Identities=14% Similarity=0.108 Sum_probs=35.7
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
-.++-..||+.+|++.+.+-+.+.+|..+|-|.- ..|.|...++
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~----~~~~i~I~d~ 228 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIEL----HRKEILIPDA 228 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE----ETTEEEESCG
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEe----cCCEEEEeCh
Confidence 4588999999999999999999999999987742 2456666543
No 481
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=24.32 E-value=1.1e+02 Score=24.88 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHHHH
Q 016653 293 REVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSRFI 334 (385)
Q Consensus 293 ~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI 334 (385)
..-|.-....| +.-.+...+|+.+|+|+..+...+.+..
T Consensus 143 ~~~r~vl~l~~---~~g~s~~EIA~~lgis~~tV~~~l~ra~ 181 (194)
T 1or7_A 143 EDLRMAITLRE---LDGLSYEEIAAIMDCPVGTVRSRIFRAR 181 (194)
T ss_dssp HHHHHHHHHHH---TTCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhHHHH---HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444566 5678999999999999999988887654
No 482
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=24.00 E-value=41 Score=28.34 Aligned_cols=44 Identities=16% Similarity=0.286 Sum_probs=0.0
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
-.++.+.||+.+|+|.+.+-+.+.+|..+|-| ....|.|...++
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~G~I----~~~~~~i~I~d~ 206 (213)
T 1o5l_A 163 LPVTLEELSRLFGCARPALSRVFQELEREGYI----EKHGRRIKVLKN 206 (213)
T ss_dssp ------------------------------------------------
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCeE----EEcCCEEEEech
Confidence 46789999999999999999999999888765 333455655433
No 483
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=22.89 E-value=3.5e+02 Score=23.79 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHH-HHHHHHHHHHh-CCHHHHHHHHHHH
Q 016653 47 ASFYETLVAESVLEMD-QSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREA-HLAKSLFYIQI-GDKEKALEQLKVT 123 (385)
Q Consensus 47 ~~~y~~~~~~~~~~~D-~~~~~~~~~~~~~~l~~Le~~l~~~~~n~~~~~ir~a-~~~la~~~~~~-Gd~~~A~~~~~~~ 123 (385)
++||+.+++- ....+ .++.+......++-.+.-..+|. ...-||-| -+..+-|||++ |+.++|.+.-.++
T Consensus 130 GDyyRYlAE~-~~g~~r~~~~e~a~~aY~~A~~iA~~~L~------pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~A 202 (236)
T 3iqu_A 130 GDYYRYLAEV-ATGDDKKRIIDSARSAYQEAMDISKKEMP------PTNPIRLGLALNFSVFHYEIANSPEEAISLAKTT 202 (236)
T ss_dssp HHHHHHHHHH-CCSTTHHHHHHHHHHHHHHHHHHHHHHSC------TTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHhhCC------CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677776553 22222 45555555444444443333222 22346666 67789999987 8899998887766
Q ss_pred Hhh
Q 016653 124 ESK 126 (385)
Q Consensus 124 ~~~ 126 (385)
.+.
T Consensus 203 fd~ 205 (236)
T 3iqu_A 203 FDE 205 (236)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 484
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=22.73 E-value=2e+02 Score=24.98 Aligned_cols=41 Identities=32% Similarity=0.344 Sum_probs=34.7
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCE
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGV 349 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~gi 349 (385)
..|+...+|..||+|+.-....|-.++.+|-+.-- |+..|.
T Consensus 167 g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D-~~~eg~ 207 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD-DSVEGL 207 (218)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ESSSCE
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE-CCCCce
Confidence 57999999999999999999999999999976432 477774
No 485
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=22.65 E-value=2.4e+02 Score=25.47 Aligned_cols=65 Identities=17% Similarity=0.043 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchhHHHhHHHHHHHH
Q 016653 74 EDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQKMDLVFYTLQLG 144 (385)
Q Consensus 74 ~~~l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~~id~~l~~i~~~ 144 (385)
+..++.++++++ .+-.+.+.| ..|.++++=.||++.|.+-+.-..+...........+-..|+..
T Consensus 14 ~~al~~~~~~VR---~~P~da~~R---~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE 78 (273)
T 1zbp_A 14 QQALELLIEAIK---ASPKDASLR---SSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA 78 (273)
T ss_dssp HHHHHHHHHHHH---TCTTCHHHH---HHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCcCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH
Confidence 345566666666 443444444 45577899999999999988877766655555555555555544
No 486
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=22.53 E-value=1.6e+02 Score=29.78 Aligned_cols=55 Identities=15% Similarity=0.298 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHH----------hcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016653 33 LKGEVFSMVKAHDMASFYETLVA----------ESVLEMDQSVLDSMRTKIEDELKKLDDRIADA 87 (385)
Q Consensus 33 ~~~~~~~~ik~~~m~~~y~~~~~----------~~~~~~D~~~~~~~~~~~~~~l~~Le~~l~~~ 87 (385)
+...+.+.+++.++...|..+-- .-|++.|.+.++++.....+++++|++++...
T Consensus 173 L~~~L~~~L~e~~l~~l~~~~E~pl~~vl~~me~~Gi~vD~~~l~~~~~~~~~~~~~l~~~~~~~ 237 (592)
T 3pv8_A 173 LERPFLDELRRNEQDRLLVELEQPLSSILAEMEFAGVKVDTKRLEQMGKELAEQLGTVEQRIYEL 237 (592)
T ss_dssp HHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHCEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHhHHHHHHHHHhcCCEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677778899999887622 24789999999999999999999999988764
No 487
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.26 E-value=2.2e+02 Score=27.65 Aligned_cols=58 Identities=10% Similarity=0.110 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-hcc-------chhHHHhHHHHHHHHHHhcCH
Q 016653 93 ESEVREAHLAKSLFYIQIGDKEKALEQLKVTESK-TVA-------VGQKMDLVFYTLQLGFFYMDF 150 (385)
Q Consensus 93 ~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~-~~~-------~~~~id~~l~~i~~~i~~~~~ 150 (385)
..+...=+|-+|+++.-.++|.+|.+.+..+... |.. .+++.-+..-+|=+.+..|+.
T Consensus 216 ~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIpv~LLlG~~ 281 (455)
T 3t5v_B 216 LDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIPTGLILGKM 281 (455)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHHHHHHcCCC
Confidence 3455566899999999999999999999999888 852 344444455555566677754
No 488
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=22.22 E-value=3.3e+02 Score=22.45 Aligned_cols=101 Identities=7% Similarity=0.090 Sum_probs=57.5
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhccchh
Q 016653 53 LVAESVLEMDQSVLDSMRTKIEDELKKLDDRIADAEENLGESEVREAHLAKSLFYIQIGDKEKALEQLKVTESKTVAVGQ 132 (385)
Q Consensus 53 ~~~~~~~~~D~~~~~~~~~~~~~~l~~Le~~l~~~~~n~~~~~ir~a~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~ 132 (385)
+.++.|.|.....++.+..-...-...+-.+ + ..--..-...+..+|.+ .+++|.+.|.+.|..++..|..= .
T Consensus 22 llE~~g~p~~d~~l~rlrd~YerAia~~Pp~----k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkF-A 94 (161)
T 4h7y_A 22 KLEKNSVPLSDALLNKLIGRYSQAIEALPPD----K-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCKKF-A 94 (161)
T ss_dssp HHHHHTCSCCHHHHHHHHHHHHHHHHHSCGG----G-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTB-H
T ss_pred HHHHcCCCchhhHHHHHHHHHHHHHHcCCcc----c-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHH-H
Confidence 3444455543366666665444443333322 1 11224455667888876 78899999999999987654322 2
Q ss_pred HHHhHHHHHHHHHHhcCHHHHHhHHHHHHH
Q 016653 133 KMDLVFYTLQLGFFYMDFDLISKSIDKAKS 162 (385)
Q Consensus 133 ~id~~l~~i~~~i~~~~~~~~~~~i~ka~~ 162 (385)
++ .+.-.+-.+-.||...+..-+.+|-.
T Consensus 95 Ki--wi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 95 FV--HISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp HH--HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 22 22223334446777776666666555
No 489
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=22.13 E-value=3.8e+02 Score=23.09 Aligned_cols=87 Identities=10% Similarity=0.089 Sum_probs=59.8
Q ss_pred HHhCCHHHHHHHHHHHHhhhcc--------chhH----HHhHHHHHHHHHHhcCHHHHHhHHHHHHHHHhcCCC-hhhhh
Q 016653 108 IQIGDKEKALEQLKVTESKTVA--------VGQK----MDLVFYTLQLGFFYMDFDLISKSIDKAKSLFEEGGD-WERKN 174 (385)
Q Consensus 108 ~~~Gd~~~A~~~~~~~~~~~~~--------~~~~----id~~l~~i~~~i~~~~~~~~~~~i~ka~~~~~~~~~-~~~~~ 174 (385)
++.+||+.|.+.+.+++...+. ..+. .+++=.=.++++..+|...-..+....+.....+.. ...+.
T Consensus 18 ~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D~~~F~~~~~qLk~~Y~~~~~~s~~~~ 97 (229)
T 4b0z_A 18 YDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCDIESFARYASQVIPFYHDSLVPSSRMG 97 (229)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSCCCCCTTHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHccCCCCccHH
Confidence 4678999999999987632211 1111 133334477899999999999999999998865322 23456
Q ss_pred hhhHHHHHhccccCCHHHHH
Q 016653 175 RLKVYEGLYCMSTRNFKKAA 194 (385)
Q Consensus 175 ~l~~~~gl~~l~~r~~~~Aa 194 (385)
.+..|.-++.+.+++-.+-.
T Consensus 98 e~~~~~LL~lL~~~~~~ef~ 117 (229)
T 4b0z_A 98 LVTGLNLLYLLSENRIAEFH 117 (229)
T ss_dssp HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHH
Confidence 67777778888888876543
No 490
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=21.93 E-value=2.9e+02 Score=23.53 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=38.4
Q ss_pred hccccccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEc
Q 016653 303 FLESYKSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETN 353 (385)
Q Consensus 303 y~~pY~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~ 353 (385)
.+.....++++.+|+.+|+|...+-+.|.+|-..|=+.-..|.-...+..+
T Consensus 21 ~l~~~~~~s~s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT 71 (230)
T 3cta_A 21 EASNRAYLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNIT 71 (230)
T ss_dssp TTSSEEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC
T ss_pred ccccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEEC
Confidence 334456788999999999999999999999999776666666533344433
No 491
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=21.78 E-value=78 Score=26.15 Aligned_cols=44 Identities=16% Similarity=0.169 Sum_probs=36.1
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
-.++-+.||+.+|+|.+.+-+.+.+|...|-|. ...|.|...++
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 188 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIR----SGYGKIQLLDL 188 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeCH
Confidence 347889999999999999999999999998775 33577777643
No 492
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=21.68 E-value=84 Score=25.68 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=35.3
Q ss_pred HHHHHHHHHhccccccccHHHHHHHh-----CCChHHHHHHHHHH
Q 016653 294 EVRTVVYSQFLESYKSVTIEAMAKAF-----GVTVEFIDVELSRF 333 (385)
Q Consensus 294 ~iR~~~~~qy~~pY~~I~l~~mA~~f-----g~s~~~iE~~L~~l 333 (385)
.-|...+.++++.+...+.+.|++.| ++|..-+-+.|.+|
T Consensus 4 ~~R~~~I~~li~~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~eL 48 (149)
T 1b4a_A 4 GQRHIKIREIIMSNDIETQDELVDRLREAGFNVTQATVSRDIKEM 48 (149)
T ss_dssp CHHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCccHHHHHHHHHHcCCCcCHHHHHHHHHHc
Confidence 35788899999999999999999999 89998888888776
No 493
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=21.43 E-value=1.6e+02 Score=22.01 Aligned_cols=28 Identities=29% Similarity=0.303 Sum_probs=23.9
Q ss_pred ccccHHHHHHHhCCChHHHHHHHHHHHh
Q 016653 308 KSVTIEAMAKAFGVTVEFIDVELSRFIA 335 (385)
Q Consensus 308 ~~I~l~~mA~~fg~s~~~iE~~L~~lI~ 335 (385)
...++..+|+.+|+|+..+...+.+.+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999998887766554
No 494
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=21.43 E-value=3.8e+02 Score=22.75 Aligned_cols=75 Identities=9% Similarity=0.029 Sum_probs=52.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhHHHhhhchhHhHhHHHHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHH
Q 016653 252 LSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELS 331 (385)
Q Consensus 252 ~~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~ 331 (385)
+.+++.++.+.++..+.+...++.. +-+..+.+.++|+......++.|+.+-++..++..+.==.+.++.-..
T Consensus 33 L~~~~~~~~~~d~~~~~~~~~~i~~-------~E~~aD~l~~~I~~~L~~~~~~P~dredi~~L~~~lD~I~D~~~~~a~ 105 (227)
T 2olt_A 33 LVPFFEATITGNWDDAVQIRKQISL-------AEKQGDSLKREIRLTLPSGLFMPVERTDLLELLTQQDKIANKAKDISG 105 (227)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHGGGCCSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777888776554444322 145678999999998888899999998888887776544444444443
Q ss_pred HH
Q 016653 332 RF 333 (385)
Q Consensus 332 ~l 333 (385)
.+
T Consensus 106 ~~ 107 (227)
T 2olt_A 106 RV 107 (227)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 495
>1nxh_A MTH396 protein; hypothetical protein, disulfide bonds, homodimer, structural genomics, PSI, protein structure initiative; 2.80A {Methanothermobacterthermautotrophicus} SCOP: a.200.1.1
Probab=21.33 E-value=29 Score=27.50 Aligned_cols=41 Identities=12% Similarity=0.279 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhccccccccHHHHHHHhCCChHHHHHHHHH
Q 016653 290 YYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 290 ~l~~~iR~~~~~qy~~pY~~I~l~~mA~~fg~s~~~iE~~L~~ 332 (385)
..++.|..|++..| |+..=-+--++++||+|.+++++-+++
T Consensus 5 e~~~~MK~ril~S~--~w~edviiPlSk~lgis~ee~~~I~~~ 45 (126)
T 1nxh_A 5 ELMRLMKRRILESY--RWQEDVVKPLSRELEIDVEEFQDILMD 45 (126)
T ss_dssp HHHHHHHHHHHTSH--HHHHHTTTTTTTTGGGTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc--hHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 46777777777665 333333445789999999999888765
No 496
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=20.91 E-value=2.4e+02 Score=21.18 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=39.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHhHHHhhhchhHhHhHHHHHHHHHHH
Q 016653 252 LSEFLNSLYDCQYKSFFSAFAGLTEQIKLDRYLYPHFRYYMREVRTV 298 (385)
Q Consensus 252 ~~~li~~f~~~~y~~~~~~L~~~~~~l~~D~~l~~h~~~l~~~iR~~ 298 (385)
+.++-..|- .|......+...+++.+..|+-+...++.+...+...
T Consensus 53 l~~IG~~fg-RDHsTV~ha~~ki~~~~~~d~~l~~~i~~l~~~l~~~ 98 (101)
T 3pvv_A 53 LPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQR 98 (101)
T ss_dssp HHHHHHHTT-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 567777777 9999999999999999999999999999888877653
No 497
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=20.84 E-value=63 Score=26.63 Aligned_cols=43 Identities=16% Similarity=0.069 Sum_probs=35.4
Q ss_pred cccHHHHHHHhCCChHHHHHHHHHHHhCCccceEEecCCCEEEEcCC
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSRFIAAGKLHCKIDKVAGVLETNRP 355 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~lI~~g~l~akID~~~giv~~~~~ 355 (385)
.++-+.||+.+|+|.+.+-+.+.+|..+|-|. ...|.|...++
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 181 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIA----TAYRRVYLLDL 181 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE----EETTEEEECCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 47889999999999999999999999988763 33566777643
No 498
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=20.68 E-value=1.5e+02 Score=23.09 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=24.1
Q ss_pred cccccHHHHHHHhCCChHHHHHHHHHHH
Q 016653 307 YKSVTIEAMAKAFGVTVEFIDVELSRFI 334 (385)
Q Consensus 307 Y~~I~l~~mA~~fg~s~~~iE~~L~~lI 334 (385)
+.-.+...+|+.+|+|+..+...+.+..
T Consensus 122 ~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 122 IRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5677999999999999999988877654
No 499
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=20.63 E-value=73 Score=21.90 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=17.0
Q ss_pred ccHHHHHHHhCCChHHHHHHH
Q 016653 310 VTIEAMAKAFGVTVEFIDVEL 330 (385)
Q Consensus 310 I~l~~mA~~fg~s~~~iE~~L 330 (385)
+++..+|+..|+|+.-+-+.|
T Consensus 1 ~T~~diA~~aGVS~sTVSrvL 21 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVI 21 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHH
Confidence 578999999999988765544
No 500
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.60 E-value=24 Score=22.03 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.1
Q ss_pred cccHHHHHHHhCCChHHHHHHHHH
Q 016653 309 SVTIEAMAKAFGVTVEFIDVELSR 332 (385)
Q Consensus 309 ~I~l~~mA~~fg~s~~~iE~~L~~ 332 (385)
..+...+|..||+|..-+-+++.+
T Consensus 21 g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 21 GHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp TCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Confidence 378999999999999988777643
Done!