Query 016655
Match_columns 385
No_of_seqs 209 out of 770
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 17:13:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4i1k_A B3 domain-containing tr 100.0 5.9E-36 2E-40 262.5 16.0 134 213-378 12-145 (146)
2 1yel_A AT1G16640; CESG, protei 99.9 1.7E-27 5.8E-32 197.2 12.2 98 2-100 7-104 (104)
3 1yel_A AT1G16640; CESG, protei 99.9 1.3E-22 4.3E-27 167.8 11.6 99 243-376 4-102 (104)
4 4i1k_A B3 domain-containing tr 99.8 6E-20 2E-24 160.8 13.7 96 2-98 45-143 (146)
5 1wid_A DNA-binding protein RAV 99.8 9.3E-20 3.2E-24 156.6 12.9 103 244-377 8-119 (130)
6 1wid_A DNA-binding protein RAV 99.6 2.6E-14 8.8E-19 122.6 12.5 96 2-97 10-117 (130)
7 2glw_A PHS018, 92AA long hypot 53.9 58 0.002 25.3 7.8 69 18-89 15-89 (92)
8 2cbp_A Cucumber basic protein; 47.6 8.4 0.00029 30.3 2.0 27 344-370 18-44 (96)
9 1x9u_A Umecyanin; cupredoxin, 45.2 7.7 0.00026 31.7 1.5 28 343-370 23-50 (116)
10 1f56_A Plantacyanin; cupredoxi 31.6 27 0.00092 27.0 2.5 28 343-370 12-39 (91)
11 1ws8_A Mavicyanin; oxidized fo 29.3 38 0.0013 27.1 3.2 29 342-370 22-50 (109)
12 1yfb_A Transition state regula 29.2 89 0.003 22.1 4.8 29 56-87 21-49 (59)
13 2l66_A SSO7C4, transcriptional 28.5 48 0.0016 22.7 3.2 29 57-88 12-40 (53)
14 1ws8_A Mavicyanin; oxidized fo 24.3 47 0.0016 26.6 2.8 27 66-92 22-50 (109)
15 4e8b_A Ribosomal RNA small sub 21.1 2E+02 0.0068 26.1 6.8 52 1-55 1-57 (251)
16 1jer_A Cucumber stellacyanin; 21.1 34 0.0012 28.7 1.4 29 342-370 24-52 (138)
No 1
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=100.00 E-value=5.9e-36 Score=262.48 Aligned_cols=134 Identities=81% Similarity=1.342 Sum_probs=113.9
Q ss_pred ccchhhhhhccccccCCHHHHHHHHHHhhhcCCCCCEEEEEccccccCCCeEEeeecccccccccccccccchhhhhhhh
Q 016655 213 MQFRFYESASARKRTVTAEERERAINAAKAFEPSNPFCRVVLRPSYLYKGCIMVSCRISITLHCFSVSHDNMLDVRCIYF 292 (385)
Q Consensus 213 ~~~~~~~~~~~~~~~vt~~e~~~~~~~a~~~~s~~P~f~~vm~~s~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (385)
++..||+++++++++||.+|+++|+++|++|+|++|+|+++|++|+|+++++|
T Consensus 12 ~~~~~~~~~~~~r~~~t~~~k~~a~~~A~~~~s~~P~Fvk~l~~S~v~~~~~L--------------------------- 64 (146)
T 4i1k_A 12 SRSKFYESASARKRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRGCIM--------------------------- 64 (146)
T ss_dssp --------------CCCHHHHHHHHHHHHHCCCSSCEEEEECCGGGSSTTCCE---------------------------
T ss_pred chhhhhhhhccCCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECchhcCCCcEE---------------------------
Confidence 45678999999999999999999999999999999999999999999998878
Q ss_pred ccCcccCHHHHHhcCCCCceeEEEEeCCCCeEEEEEEEeCCeeEeccChHHHhhHcCCCCCCEEEEEEecCceeEEEEEE
Q 016655 293 LLLQYLPSCFAEKHLNGVCGFIKLQLSDGKQWPVRCLYRGGRAKFSQGWYEFTVENRLGEGDVCVFEVLRAREFVLKVTV 372 (385)
Q Consensus 293 ~~~~~IP~~Fa~~~lp~~~~~i~L~~~~Gr~W~v~~~~~~~~~~ls~GW~~F~~dN~L~~GDvcvFel~~~~~~~~~V~I 372 (385)
.||.+|+++|||...++|+|+++ |+.|.|++.+.+++..|++||++||+||+|++||+|+|||+++.+++|+|||
T Consensus 65 ----~IP~~Fa~~~lp~~~~~i~L~~~-gk~W~v~~~~~~~~~~ls~GW~~Fv~dn~L~~GD~cvFeli~~~~~~f~V~I 139 (146)
T 4i1k_A 65 ----YLPSGFAEKYLSGISGFIKVQLA-EKQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVCVFELLRTRDFVLKVTA 139 (146)
T ss_dssp ----ECCHHHHHHHCTTCCSEEEEEET-TEEEEEEEEEETTEEEECTTHHHHHHHTTCCTTCEEEEEECSSSSCEEEEEE
T ss_pred ----EeCHHHHHHhCCCCCeEEEEEEC-CcEEEEEEEEeCCcEEECCchHHHHHHcCCCCCCEEEEEEecCCceEEEEEE
Confidence 89999999999999999999998 5999999998888899999999999999999999999999998789999999
Q ss_pred EeecCC
Q 016655 373 FRVSES 378 (385)
Q Consensus 373 fr~~~~ 378 (385)
||++|+
T Consensus 140 fR~~e~ 145 (146)
T 4i1k_A 140 FRVNEY 145 (146)
T ss_dssp ECCC--
T ss_pred EeccCC
Confidence 999986
No 2
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=1.7e-27 Score=197.17 Aligned_cols=98 Identities=23% Similarity=0.420 Sum_probs=93.8
Q ss_pred CCCceEEEccCCccCCCeeecCHHHHHhccCCCCceEEEEcCCCCEEEEEEEEeCCeEEeccCHHHHHhHhCCCCCcEEE
Q 016655 2 PRPYFHKLILASTIRDKRLRIPENFVRNFKDDLSAAATLIVPNGMVSRVGLRRLDNKVWFYDGWQEFMERYFIRIGYFLV 81 (385)
Q Consensus 2 ~~P~F~kv~~~~~l~~~~L~IP~~F~~~~~~~~~~~v~L~~p~G~~W~V~l~~~~~~~~~~~GW~~Fv~~~~L~~Gd~lv 81 (385)
.+|+|+|+|++++. ...|.||..|++.|++..+++|+|++++|++|+|++.+.+++++|++||++||.+|+|++||+|+
T Consensus 7 ~~p~F~K~l~~~~~-~~~L~IP~~F~~~~~~~~~~~v~L~~~~G~~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~GD~lv 85 (104)
T 1yel_A 7 GEVQFMKPFISEKS-SKSLEIPLGFNEYFPAPFPITVDLLDYSGRSWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYLQ 85 (104)
T ss_dssp CCEEEEEECCHHHH-TTCEECCHHHHTTCCCCCCSEEEEEETTSCEEEEEEEEETTEEEECTTHHHHHHHHTCCTTCEEE
T ss_pred CCCCEEEEECCCCc-cceEECCHHHHHhcCccCCCEEEEECCCCCEEEEEEEEECCcEEEccChHHHHHHcCCCCCCEEE
Confidence 57999999999873 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecceEEEEEEcCCCc
Q 016655 82 FRYEGNSAFNVYIFNLPSS 100 (385)
Q Consensus 82 F~~~g~s~F~V~If~~s~c 100 (385)
|+|+|++.|.|+||+.+||
T Consensus 86 F~~~~~~~f~V~If~~s~C 104 (104)
T 1yel_A 86 FIYDRDRTFYVIIYGHNMC 104 (104)
T ss_dssp EEECSSSEEEEEEECSSCC
T ss_pred EEEcCCCeEEEEEECCCCC
Confidence 9999999999999999998
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.88 E-value=1.3e-22 Score=167.83 Aligned_cols=99 Identities=20% Similarity=0.272 Sum_probs=88.1
Q ss_pred cCCCCCEEEEEccccccCCCeEEeeecccccccccccccccchhhhhhhhccCcccCHHHHHhcCCCCceeEEEEeCCCC
Q 016655 243 FEPSNPFCRVVLRPSYLYKGCIMVSCRISITLHCFSVSHDNMLDVRCIYFLLLQYLPSCFAEKHLNGVCGFIKLQLSDGK 322 (385)
Q Consensus 243 ~~s~~P~f~~vm~~s~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IP~~Fa~~~lp~~~~~i~L~~~~Gr 322 (385)
..+++|.|.++|.+++. ...| .||.+|++.|.+....+|+|++++|+
T Consensus 4 ~~~~~p~F~K~l~~~~~--~~~L-------------------------------~IP~~F~~~~~~~~~~~v~L~~~~G~ 50 (104)
T 1yel_A 4 ADTGEVQFMKPFISEKS--SKSL-------------------------------EIPLGFNEYFPAPFPITVDLLDYSGR 50 (104)
T ss_dssp CCCCCEEEEEECCHHHH--TTCE-------------------------------ECCHHHHTTCCCCCCSEEEEEETTSC
T ss_pred CCCCCCCEEEEECCCCc--cceE-------------------------------ECCHHHHHhcCccCCCEEEEECCCCC
Confidence 35788999999998872 2346 89999999988888899999999999
Q ss_pred eEEEEEEEeCCeeEeccChHHHhhHcCCCCCCEEEEEEecCceeEEEEEEEeec
Q 016655 323 QWPVRCLYRGGRAKFSQGWYEFTVENRLGEGDVCVFEVLRAREFVLKVTVFRVS 376 (385)
Q Consensus 323 ~W~v~~~~~~~~~~ls~GW~~F~~dN~L~~GDvcvFel~~~~~~~~~V~Ifr~~ 376 (385)
+|.|++.+..++.+|++||++||+||+|++||+|+|+|+++. .|+|+||+..
T Consensus 51 ~W~v~~~~~~~~~~l~~GW~~Fv~~~~L~~GD~lvF~~~~~~--~f~V~If~~s 102 (104)
T 1yel_A 51 SWTVRMKKRGEKVFLTVGWENFVKDNNLEDGKYLQFIYDRDR--TFYVIIYGHN 102 (104)
T ss_dssp EEEEEEEEETTEEEECTTHHHHHHHHTCCTTCEEEEEECSSS--EEEEEEECSS
T ss_pred EEEEEEEEECCcEEEccChHHHHHHcCCCCCCEEEEEEcCCC--eEEEEEECCC
Confidence 999999988888999999999999999999999999999864 5999999963
No 4
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.83 E-value=6e-20 Score=160.77 Aligned_cols=96 Identities=18% Similarity=0.289 Sum_probs=88.2
Q ss_pred CCCceEEEccCCccCCC-eeecCHHHHHhccCCCCceEEEEcCCCCEEEEEEEEeCCeEEeccCHHHHHhHhCCCCCcEE
Q 016655 2 PRPYFHKLILASTIRDK-RLRIPENFVRNFKDDLSAAATLIVPNGMVSRVGLRRLDNKVWFYDGWQEFMERYFIRIGYFL 80 (385)
Q Consensus 2 ~~P~F~kv~~~~~l~~~-~L~IP~~F~~~~~~~~~~~v~L~~p~G~~W~V~l~~~~~~~~~~~GW~~Fv~~~~L~~Gd~l 80 (385)
.+|.|+++|+++++... .|.||..|++.|.+..+..|+|+++ |+.|.|.+...+++.+|+.||.+||.+|+|++||+|
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~~~i~L~~~-gk~W~v~~~~~~~~~~ls~GW~~Fv~dn~L~~GD~c 123 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISGFIKVQLA-EKQWPVRCLYKAGRAKFSQGWYEFTLENNLGEGDVC 123 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCCSEEEEEET-TEEEEEEEEEETTEEEECTTHHHHHHHTTCCTTCEE
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCCeEEEEEEC-CcEEEEEEEEeCCcEEECCchHHHHHHcCCCCCCEE
Confidence 47999999999998543 6999999999999888899999999 599999999888899999999999999999999999
Q ss_pred EEEEeecc--eEEEEEEcCC
Q 016655 81 VFRYEGNS--AFNVYIFNLP 98 (385)
Q Consensus 81 vF~~~g~s--~F~V~If~~s 98 (385)
+|+|.++. .|.|+||+..
T Consensus 124 vFeli~~~~~~f~V~IfR~~ 143 (146)
T 4i1k_A 124 VFELLRTRDFVLKVTAFRVN 143 (146)
T ss_dssp EEEECSSSSCEEEEEEECCC
T ss_pred EEEEecCCceEEEEEEEecc
Confidence 99999865 8999999764
No 5
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.82 E-value=9.3e-20 Score=156.58 Aligned_cols=103 Identities=23% Similarity=0.344 Sum_probs=89.1
Q ss_pred CCCCCEEEEEccccccCCCeEEeeecccccccccccccccchhhhhhhhccCcccCHHHHHhcCCCCc-------eeEEE
Q 016655 244 EPSNPFCRVVLRPSYLYKGCIMVSCRISITLHCFSVSHDNMLDVRCIYFLLLQYLPSCFAEKHLNGVC-------GFIKL 316 (385)
Q Consensus 244 ~s~~P~f~~vm~~s~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IP~~Fa~~~lp~~~-------~~i~L 316 (385)
.+..|+|.++|++|+|...+.| .||++||++|||... .+|+|
T Consensus 8 ~~~~~~F~K~Lt~SDv~~~~rL-------------------------------~iPk~~a~~~lP~~~~~~~~~~~~l~l 56 (130)
T 1wid_A 8 RSAEALFEKAVTPSDVGKLNRL-------------------------------VIPKHHAEKHFPLPSSNVSVKGVLLNF 56 (130)
T ss_dssp CCCEEEEEEECCTTTTSSSCCE-------------------------------EECHHHHTTTSCCCSSCCSSCCEEEEE
T ss_pred CCCcceEEEEEehHHcCCCCEE-------------------------------EeCHHHHHhhCCccccccCCCcEEEEE
Confidence 3567999999999999876556 899999999998654 57889
Q ss_pred EeCCCCeEEEEEEEeC--CeeEeccChHHHhhHcCCCCCCEEEEEEecCceeEEEEEEEeecC
Q 016655 317 QLSDGKQWPVRCLYRG--GRAKFSQGWYEFTVENRLGEGDVCVFEVLRAREFVLKVTVFRVSE 377 (385)
Q Consensus 317 ~~~~Gr~W~v~~~~~~--~~~~ls~GW~~F~~dN~L~~GDvcvFel~~~~~~~~~V~Ifr~~~ 377 (385)
+|.+|+.|.++|.+++ .++.|++||..||++|+|++||+|+|+++++.+-.+.|.+.|...
T Consensus 57 ~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~ 119 (130)
T 1wid_A 57 EDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSG 119 (130)
T ss_dssp EETTTEEEEEEEEEETTTTEEEEESSHHHHHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCS
T ss_pred EeCCCCEEEEEEEEECCCCceEEcCChHHHHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCC
Confidence 9999999999998875 468899999999999999999999999998654567888888763
No 6
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.56 E-value=2.6e-14 Score=122.58 Aligned_cols=96 Identities=19% Similarity=0.229 Sum_probs=80.6
Q ss_pred CCCceEEEccCCccC-CCeeecCHHHHHhccCCCC-------ceEEEEcCCCCEEEEEEEEe--CCeEEeccCHHHHHhH
Q 016655 2 PRPYFHKLILASTIR-DKRLRIPENFVRNFKDDLS-------AAATLIVPNGMVSRVGLRRL--DNKVWFYDGWQEFMER 71 (385)
Q Consensus 2 ~~P~F~kv~~~~~l~-~~~L~IP~~F~~~~~~~~~-------~~v~L~~p~G~~W~V~l~~~--~~~~~~~~GW~~Fv~~ 71 (385)
+.|.|.|+|+++++. ...|.||..|+..|.+.+. ..++|+|+.|+.|++++... ....+|+.||..||++
T Consensus 10 ~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~FV~~ 89 (130)
T 1wid_A 10 AEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKE 89 (130)
T ss_dssp CEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHHHHH
T ss_pred CcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHHHHH
Confidence 357899999999985 3689999999999887654 36889999999999999876 3577899999999999
Q ss_pred hCCCCCcEEEEEEeec--ceEEEEEEcC
Q 016655 72 YFIRIGYFLVFRYEGN--SAFNVYIFNL 97 (385)
Q Consensus 72 ~~L~~Gd~lvF~~~g~--s~F~V~If~~ 97 (385)
|+|++||+|+|....+ ..+.|.+-..
T Consensus 90 ~~L~~GD~~~F~~~~~~~~~l~I~~rr~ 117 (130)
T 1wid_A 90 KNLRAGDVVSFSRSNGQDQQLYIGWKSR 117 (130)
T ss_dssp TTCCTTCEEEEEECCSSSCCEEEEEECC
T ss_pred cCCCCCCEEEEEEecCCCcEEEEEEEEC
Confidence 9999999999999853 5676665543
No 7
>2glw_A PHS018, 92AA long hypothetical protein; RIFT barrel, bioinformatics, transcription; NMR {Pyrococcus horikoshii}
Probab=53.90 E-value=58 Score=25.29 Aligned_cols=69 Identities=12% Similarity=0.077 Sum_probs=48.1
Q ss_pred CeeecCHHHHHhccCCCCceEEEEc---CCCC-EEEEEEEEe--CCeEEeccCHHHHHhHhCCCCCcEEEEEEeecce
Q 016655 18 KRLRIPENFVRNFKDDLSAAATLIV---PNGM-VSRVGLRRL--DNKVWFYDGWQEFMERYFIRIGYFLVFRYEGNSA 89 (385)
Q Consensus 18 ~~L~IP~~F~~~~~~~~~~~v~L~~---p~G~-~W~V~l~~~--~~~~~~~~GW~~Fv~~~~L~~Gd~lvF~~~g~s~ 89 (385)
+.+.||..+-+.++-.....|.+.. .+|. .......+- .|++.+- ++..+..+|++||.|.|...|.-.
T Consensus 15 gqvtiP~~iR~~LgI~~GD~V~v~~i~~~~g~~~~~~~~~~v~~kGqitIP---keiR~~lgi~~Gd~l~~~~~~~~~ 89 (92)
T 2glw_A 15 GRIIIPAGTRKFYGIEQGDFVEIKIVKYEGEEPKEGTFTARVGEQGSVIIP---KALRDVIGIKPGEVIEVLLLGHYK 89 (92)
T ss_dssp GEEECCHHHHHHHTCCTTCEEEEEEEEEETTEEEEEEEEEECCGGGEEECC---HHHHHHHTCCTTCEEEEEEEEEEC
T ss_pred CEEEecHHHHHHcCCCCCCEEEEEEEEecCCccceeEEEEEECcCceEECc---HHHHHHcCCCCCCEEEEEEeCcEE
Confidence 6899999999998866666666522 2333 122222221 4677777 799999999999999998876543
No 8
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=47.62 E-value=8.4 Score=30.29 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=20.5
Q ss_pred HhhHcCCCCCCEEEEEEecCceeEEEE
Q 016655 344 FTVENRLGEGDVCVFEVLRAREFVLKV 370 (385)
Q Consensus 344 F~~dN~L~~GDvcvFel~~~~~~~~~V 370 (385)
-+..+..++||.++|++.....-+++|
T Consensus 18 Wa~~~~f~vGD~L~F~y~~~~hsV~~v 44 (96)
T 2cbp_A 18 WPKGKRFRAGDILLFNYNPSMHNVVVV 44 (96)
T ss_dssp TTTTCCBCTTCEEEEECCTTTCCEEEE
T ss_pred hccCceEcCCCEEEEEecCCCCEEEEE
Confidence 367789999999999998654445555
No 9
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=45.22 E-value=7.7 Score=31.69 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=21.2
Q ss_pred HHhhHcCCCCCCEEEEEEecCceeEEEE
Q 016655 343 EFTVENRLGEGDVCVFEVLRAREFVLKV 370 (385)
Q Consensus 343 ~F~~dN~L~~GDvcvFel~~~~~~~~~V 370 (385)
.-+..+..++||.++|++.....-+++|
T Consensus 23 ~Wa~~~~f~vGD~L~F~y~~~~HsV~~V 50 (116)
T 1x9u_A 23 TWATGKTFRVGDELEFDFAAGMHDVAVV 50 (116)
T ss_dssp HHHTTCCEETTCEEEECCCTTTCCEEEE
T ss_pred hccccccCcCCCEEEEEecCCCCeEEEE
Confidence 4578889999999999998654444554
No 10
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=31.59 E-value=27 Score=27.05 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=21.5
Q ss_pred HHhhHcCCCCCCEEEEEEecCceeEEEE
Q 016655 343 EFTVENRLGEGDVCVFEVLRAREFVLKV 370 (385)
Q Consensus 343 ~F~~dN~L~~GDvcvFel~~~~~~~~~V 370 (385)
.-+..+..++||.++|++.....-+++|
T Consensus 12 ~Wa~~~~f~vGD~L~F~y~~~~hsV~~v 39 (91)
T 1f56_A 12 NGARGKSFRAGDVLVFKYIKGQHNVVAV 39 (91)
T ss_dssp BSCTTCCBCTTCEEEEECCBTTBCEEEE
T ss_pred cCcCCccEeCCCEEEEEccCCCCeEEEE
Confidence 4577889999999999998754445555
No 11
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=29.33 E-value=38 Score=27.10 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=22.0
Q ss_pred HHHhhHcCCCCCCEEEEEEecCceeEEEE
Q 016655 342 YEFTVENRLGEGDVCVFEVLRAREFVLKV 370 (385)
Q Consensus 342 ~~F~~dN~L~~GDvcvFel~~~~~~~~~V 370 (385)
.+-+..+..++||.++|.+.....-+++|
T Consensus 22 ~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V 50 (109)
T 1ws8_A 22 AKWASSNKFHVGDSLLFNYNNKFHNVLQV 50 (109)
T ss_dssp HHHHHTSCBCTTCEEEEECCTTTCCEEEE
T ss_pred hHhhcCCcCcCCCEEEEeecCCCceEEEE
Confidence 45678899999999999998653334444
No 12
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=29.22 E-value=89 Score=22.14 Aligned_cols=29 Identities=14% Similarity=-0.075 Sum_probs=25.0
Q ss_pred CCeEEeccCHHHHHhHhCCCCCcEEEEEEeec
Q 016655 56 DNKVWFYDGWQEFMERYFIRIGYFLVFRYEGN 87 (385)
Q Consensus 56 ~~~~~~~~GW~~Fv~~~~L~~Gd~lvF~~~g~ 87 (385)
.|++.+- ++..+..+|++||.|.|..+++
T Consensus 21 kGqItIP---keiR~~Lgi~~Gd~l~i~~~~~ 49 (59)
T 1yfb_A 21 LGRVVIP---IELRRTLGIAEKDALEIYVDDE 49 (59)
T ss_dssp TCEEECC---HHHHHHTTCCTTCEEEEEEETT
T ss_pred CCEEEeC---HHHHHHcCCCCCCEEEEEEECC
Confidence 4677777 7899999999999999999876
No 13
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=28.53 E-value=48 Score=22.72 Aligned_cols=29 Identities=10% Similarity=0.256 Sum_probs=23.7
Q ss_pred CeEEeccCHHHHHhHhCCCCCcEEEEEEeecc
Q 016655 57 NKVWFYDGWQEFMERYFIRIGYFLVFRYEGNS 88 (385)
Q Consensus 57 ~~~~~~~GW~~Fv~~~~L~~Gd~lvF~~~g~s 88 (385)
|++.+- +++.+..+|+.||.|.|...++.
T Consensus 12 gqi~IP---k~ir~~lgi~~Gd~v~i~~~~~~ 40 (53)
T 2l66_A 12 YQVTIP---AKVRQKFQIKEGDLVKVTFDESE 40 (53)
T ss_dssp SCBCCC---HHHHHHSCCCTTCEEEEEECSSS
T ss_pred CEEEeC---HHHHHHcCcCCCCEEEEEEECCE
Confidence 455555 68899999999999999988764
No 14
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=24.29 E-value=47 Score=26.55 Aligned_cols=27 Identities=19% Similarity=0.433 Sum_probs=20.9
Q ss_pred HHHHhHhCCCCCcEEEEEEeec--ceEEE
Q 016655 66 QEFMERYFIRIGYFLVFRYEGN--SAFNV 92 (385)
Q Consensus 66 ~~Fv~~~~L~~Gd~lvF~~~g~--s~F~V 92 (385)
..-+..+....||.|+|+|... +...|
T Consensus 22 ~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V 50 (109)
T 1ws8_A 22 AKWASSNKFHVGDSLLFNYNNKFHNVLQV 50 (109)
T ss_dssp HHHHHTSCBCTTCEEEEECCTTTCCEEEE
T ss_pred hHhhcCCcCcCCCEEEEeecCCCceEEEE
Confidence 4557888999999999999854 45444
No 15
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=21.09 E-value=2e+02 Score=26.11 Aligned_cols=52 Identities=12% Similarity=0.117 Sum_probs=37.4
Q ss_pred CCCCceEEEccCCcc-CCCeeecCHHHHHhccC----CCCceEEEEcCCCCEEEEEEEEe
Q 016655 1 MPRPYFHKLILASTI-RDKRLRIPENFVRNFKD----DLSAAATLIVPNGMVSRVGLRRL 55 (385)
Q Consensus 1 ~~~P~F~kv~~~~~l-~~~~L~IP~~F~~~~~~----~~~~~v~L~~p~G~~W~V~l~~~ 55 (385)
||.|.||- +..+ ....+.|+..=+++... +..+.|.|.|..|..|..++...
T Consensus 1 MrmpRff~---~~~l~~~~~i~L~~~~~~Hl~~VLR~~~Gd~v~l~dg~g~~~~a~I~~i 57 (251)
T 4e8b_A 1 MRIPRIYH---PEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSA 57 (251)
T ss_dssp --CCEEEC---SSCCCTTCEEECCHHHHHHHHTTSCCCSCCEEEEECSSSEEEEEEEEEE
T ss_pred CCCCEEEE---CcccCCCCEEEeCHHHHHHHHHhCcCCCCCEEEEEeCCCcEEEEEEEEe
Confidence 88999984 3322 24678999887766543 44689999999999999988765
No 16
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=21.07 E-value=34 Score=28.71 Aligned_cols=29 Identities=14% Similarity=0.187 Sum_probs=21.6
Q ss_pred HHHhhHcCCCCCCEEEEEEecCceeEEEE
Q 016655 342 YEFTVENRLGEGDVCVFEVLRAREFVLKV 370 (385)
Q Consensus 342 ~~F~~dN~L~~GDvcvFel~~~~~~~~~V 370 (385)
.+-+..+..++||.++|++.....-+++|
T Consensus 24 ~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V 52 (138)
T 1jer_A 24 SQWAAGKTFRVGDSLQFNFPANAHNVHEM 52 (138)
T ss_dssp HHHHHTCCEETTCEEEECCCTTTCCCEEE
T ss_pred hhhhcCCcCcCCCEEEEeecCCCceEEEe
Confidence 45577899999999999998543334444
Done!