Query 016656
Match_columns 385
No_of_seqs 108 out of 357
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 17:14:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.5 2.3E-11 7.8E-16 119.7 31.1 271 24-383 22-323 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.5 1.9E-11 6.6E-16 120.4 26.4 282 29-382 29-315 (451)
3 2gfp_A EMRD, multidrug resista 99.3 3.5E-11 1.2E-15 116.4 14.7 158 31-242 3-164 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.0 9E-08 3.1E-12 95.7 25.8 168 28-249 13-193 (491)
5 2cfq_A Lactose permease; trans 98.9 5.8E-08 2E-12 96.2 20.2 76 28-105 7-85 (417)
6 2xut_A Proton/peptide symporte 98.5 1.4E-06 4.6E-11 88.0 15.6 167 29-248 13-194 (524)
7 1pw4_A Glycerol-3-phosphate tr 98.4 1.1E-05 3.8E-10 78.9 16.9 174 28-253 252-434 (451)
8 2cfq_A Lactose permease; trans 98.1 2.3E-05 7.9E-10 77.3 13.9 63 186-248 330-395 (417)
9 4gc0_A D-xylose-proton symport 97.9 0.0064 2.2E-07 60.1 26.3 124 67-228 60-186 (491)
10 3o7q_A L-fucose-proton symport 97.9 0.00036 1.2E-08 68.0 16.2 157 28-241 258-421 (438)
11 4gc0_A D-xylose-proton symport 97.8 0.00094 3.2E-08 66.2 18.1 148 31-227 280-429 (491)
12 4aps_A DI-OR tripeptide H+ sym 97.8 7.1E-05 2.4E-09 74.5 9.5 63 186-248 404-467 (491)
13 2gfp_A EMRD, multidrug resista 96.6 0.0024 8.1E-08 61.0 6.0 151 28-230 199-352 (375)
14 2xut_A Proton/peptide symporte 94.7 0.025 8.6E-07 56.5 5.0 50 179-228 416-465 (524)
15 1kf6_D Fumarate reductase 13 k 25.3 34 0.0011 28.0 2.1 22 203-224 12-33 (119)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.51 E-value=2.3e-11 Score=119.66 Aligned_cols=271 Identities=10% Similarity=0.006 Sum_probs=170.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHH
Q 016656 24 PHETSALLHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHR 101 (385)
Q Consensus 24 ~~E~~~~l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~ 101 (385)
++....++.+.+.+|+..+.+++.-|+.+.+..+.|.+.. -++.........+..|+.|+++| |+|||+++.+...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~d--r~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMK--KLSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHH--HSCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhcchHHHHHHHH
Confidence 3344566667777888888888999988887777766444 34444445556889999999999 9999999999888
Q ss_pred HHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 102 FFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 102 ~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
.+++..++++....... .| .+. +.|.+ ..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~----------------------------------------~~-----~l~-~~~~l---~G~~ 130 (438)
T 3o7q_A 100 LYALGAALFWPAAEIMN----------------------------------------YT-----LFL-VGLFI---IAAG 130 (438)
T ss_dssp HHHHHHHHHHHHHHTTC----------------------------------------HH-----HHH-HHHHH---HHHH
T ss_pred HHHHHHHHHHhcccccc----------------------------------------HH-----HHH-HHHHH---HHhh
Confidence 88777777644321110 22 222 12332 2333
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hH-hH------------------------H--
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FL-GP------------------------Y-- 233 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~-g~------------------------~-- 233 (385)
........-++++|.++++++.+.+++..++.++|.++|+.+++.+. .. +. +
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 210 (438)
T 3o7q_A 131 LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQT 210 (438)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHH
Confidence 44555577889999999999999999999999999999999999886 32 21 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHHHHHHHh
Q 016656 234 LLLFAACLMELAAQSSKGIYKEIPRRPEELPPLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDGLRLIFS 313 (385)
Q Consensus 234 lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~i~~ 313 (385)
++++.+++..+....... .. .+| .++ + .+ +. +++ .+..+.++.+++
T Consensus 211 ~~~~~~~~~~~~~~~~~~--~~---~p~-----~~~--~--~~--~~---------------~~~---~~~~~~~~~~~~ 256 (438)
T 3o7q_A 211 PYMIIVAIVLLVALLIML--TK---FPA-----LQS--D--NH--SD---------------AKQ---GSFSASLSRLAR 256 (438)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---CCC-----CTT--T--CC--CC---------------SST---TSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHH--Hc---CCc-----ccc--c--cc--cc---------------ccc---cchhhhHHHHHh
Confidence 443443333222222111 11 111 000 0 00 00 011 245677888999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhC
Q 016656 314 SNYLLSVSLFLWLSAVVSSFFYFQKVTV-IAMTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLLG 383 (385)
Q Consensus 314 s~yL~~i~~~v~l~~~~~~l~~f~~~~~-v~~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrlG 383 (385)
+|.+...++..+++.............+ .++.+..+++. .|...+..++..++.+.+ .+++.+|+|
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~-~g~l~~r~~ 323 (438)
T 3o7q_A 257 IRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGF---AANYLTGTMVCFFIGRFT-GTWLISRFA 323 (438)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHSC
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhH---HHHHHHHHHHHHHHHHHH-HHHHHHHhc
Confidence 9999888888777666544333333344 44544433444 445555566666665554 578888876
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.47 E-value=1.9e-11 Score=120.43 Aligned_cols=282 Identities=8% Similarity=-0.088 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhcc-CccchhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAISL-GLSKLPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSL 107 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s~-Gae~lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~ 107 (385)
.+...++..|+.....+..-+..+.+..+. +.+++.++.........+..|+.|+++| |+|||+++.+....+++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~g~r~~l~~~~~~~~~~~ 106 (451)
T 1pw4_A 29 IFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSD--RSNPRVFLPAGLILAAAVM 106 (451)
T ss_dssp HHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHhHHHHHH--hcCchHHHHHHHHHHHHHH
Confidence 445555556666666666666666555544 3334445554555566889999999999 9999999998888887777
Q ss_pred HHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHH
Q 016656 108 LVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITIS 187 (385)
Q Consensus 108 llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~s 187 (385)
+++++...... + .| ++++ .|++ .+........
T Consensus 107 ~~~~~~~~~~~-----~----------------------------------~~----~l~~--~~~l---~G~~~~~~~~ 138 (451)
T 1pw4_A 107 LFMGFVPWATS-----S----------------------------------IA----VMFV--LLFL---CGWFQGMGWP 138 (451)
T ss_dssp HHHHHCHHHHS-----S----------------------------------SS----HHHH--HHHH---HHHHHHHTHH
T ss_pred HHHHhhhhccc-----c----------------------------------HH----HHHH--HHHH---HHHHhhhccc
Confidence 77665321110 0 23 1222 1332 2333455666
Q ss_pred HHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh-HH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 016656 188 STWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG-PY-LLLFAACLMELAAQSSKGIYKEIPRRPEELP 264 (385)
Q Consensus 188 lfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g-~~-lll~aa~l~~l~~~~~~~l~~~~~~~~~~l~ 264 (385)
...++++|.++++|+.|.+|+..++.++|.++||.+++++. ..| .. .+++.+++..+...+.....+..++. .
T Consensus 139 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~- 214 (451)
T 1pw4_A 139 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS---C- 214 (451)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT---T-
T ss_pred hHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhh---c-
Confidence 88899999999999999999999999999999999998865 556 43 55555544444444333322211110 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCcccchHHH-HHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016656 265 PLRKADSDPRSGADGQTAPAAKVPSPRSSTSIVKPHLWAILDG-LRLIFSSNYLLSVSLFLWLSAVVSSFFYFQKVTVIA 343 (385)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~-l~~i~~s~yL~~i~~~v~l~~~~~~l~~f~~~~~v~ 343 (385)
....+.+.+++.. .+.+ ++++.+.+..+. .+.++++|.+..+++..++..............+..
T Consensus 215 ---~~~~~~~~~~~~~---------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (451)
T 1pw4_A 215 ---GLPPIEEYKNDYP---------DDYN--EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLK 280 (451)
T ss_dssp ---CCCSCTTTCCC------------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBT
T ss_pred ---CCCChhhhccccc---------ccch--hhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000000 0000 000001122222 467788999888888777776655444433344444
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Q 016656 344 MTVSSSLGRRRLLAEINSFIAVFILAGQLTLTGTSFLLL 382 (385)
Q Consensus 344 ~~~~~~~~~~af~G~~~~~~gv~~~~~qlf~t~~l~rrl 382 (385)
+.+..+++. .|.+.+..++..++...+ .+++.+|+
T Consensus 281 ~~~g~~~~~---~~~~~~~~~~~~~~~~~~-~g~l~~~~ 315 (451)
T 1pw4_A 281 EVKHFALDK---SSWAYFLYEYAGIPGTLL-CGWMSDKV 315 (451)
T ss_dssp TBSCCCHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHT
T ss_pred HhcCCCHHH---HHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 434333333 566667777777777665 47888887
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.28 E-value=3.5e-11 Score=116.42 Aligned_cols=158 Identities=11% Similarity=0.014 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhccCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHH
Q 016656 31 LHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (385)
Q Consensus 31 l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~l 108 (385)
+...+..|+...++++.-|..+.+..+.|.+.- .++.........+..|+.|+++| |+|||+++.+.....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d--r~g~r~~~~~~~~~~~~~~~ 80 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISD--RVGRRPVILVGMSIFMLATL 80 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHT--TSCCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCchhHHHHHHHHHHHHH
Confidence 445666788888888999998887777665443 34444445566899999999999 99999999988888777776
Q ss_pred HHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 016656 109 VFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISS 188 (385)
Q Consensus 109 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~sl 188 (385)
++++... .| ++++ .|.+ ...........
T Consensus 81 ~~~~~~~-------------------------------------------~~----~l~~--~~~l---~g~~~~~~~~~ 108 (375)
T 2gfp_A 81 VAVTTSS-------------------------------------------LT----VLIA--ASAM---QGMGTGVGGVM 108 (375)
T ss_dssp HHHHHHH-------------------------------------------HH----HHHH--HHHH---HHHHHHHHHHH
T ss_pred HHHHhcc-------------------------------------------HH----HHHH--HHHH---HHHHHHhhhhh
Confidence 6665322 12 1221 1332 23334445667
Q ss_pred HHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHH
Q 016656 189 TWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLM 242 (385)
Q Consensus 189 fWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~ 242 (385)
..+++.|.++++|+.|.+++...+.++|.++||.+++++. ..+.. .+.+.+++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (375)
T 2gfp_A 109 ARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164 (375)
T ss_dssp HHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999998876 34543 555554443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.02 E-value=9e-08 Score=95.73 Aligned_cols=168 Identities=10% Similarity=0.030 Sum_probs=113.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc------cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCC-CCchhHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS------LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPN-LSKAKALVL 98 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s------~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r-~~r~~vl~~ 98 (385)
+.++...+..|+...+++...+.......+ .|.+.. .++.........+..|+.|+++| | +|||+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d--r~~g~r~~~~~ 90 (491)
T 4aps_A 13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVAD--RIIGARPAVFW 90 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccchHHHHH
Confidence 345566667777888887777666665554 455433 34444445566889999999999 9 899999988
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHH
Q 016656 99 IHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWV 178 (385)
Q Consensus 99 ~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~ 178 (385)
....+++..+++++. . + .| ++++ .|++ .
T Consensus 91 ~~~~~~~~~~~~~~~----~-----~----------------------------------~~----~~~~--~~~l---~ 118 (491)
T 4aps_A 91 GGVLIMLGHIVLALP----F-----G----------------------------------AS----ALFG--SIIL---I 118 (491)
T ss_dssp HHHHHHHHHHHHHSC----C-----S----------------------------------TT----HHHH--HHHH---H
T ss_pred HHHHHHHHHHHHHHh----h-----h----------------------------------HH----HHHH--HHHH---H
Confidence 877766655544331 0 0 22 1222 2333 2
Q ss_pred HHHHHHHHHHHHHHHHhhCCcch--hhHHHHHHHHHHhHHHhhhHHHHHHHHh-HhHH-HHHHHHHHHHHHHHHH
Q 016656 179 ALLNLITISSTWARVIDVMDSES--GSRLFGFIGAGATLGQLFGSLFAAGMAF-LGPY-LLLFAACLMELAAQSS 249 (385)
Q Consensus 179 ~~~~~~~~slfWa~~~di~~~~e--akR~fgligag~~lG~I~G~~l~~~la~-~g~~-lll~aa~l~~l~~~~~ 249 (385)
.+..........++++|.+++++ +.+.+++.+.+.++|.++||.+++.+.. .|.+ .+.+.+++..++....
T Consensus 119 g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 119 IIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33345566788999999999999 5557888999999999999999999874 5553 5655555554444443
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.93 E-value=5.8e-08 Score=96.17 Aligned_cols=76 Identities=20% Similarity=0.167 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSK--LPGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~ 104 (385)
+.+.......|+...+++...|..+....+ .|.+. .-.+.......+.+..|+.|+++| |+||||++.+....++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsD--r~Grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSD--KLGLRKYLLWIITGML 84 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHT--TSTTCCHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHHH
Confidence 456666677788888888888888877655 55433 334444445566899999999999 9999999887766554
Q ss_pred H
Q 016656 105 V 105 (385)
Q Consensus 105 ~ 105 (385)
+
T Consensus 85 ~ 85 (417)
T 2cfq_A 85 V 85 (417)
T ss_dssp S
T ss_pred H
Confidence 3
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.53 E-value=1.4e-06 Score=88.00 Aligned_cols=167 Identities=14% Similarity=0.081 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhhhhhc-cC------ccc--hhHHHHHHHHHHHHHHHHHHHhhCCCCC-CchhHHHH
Q 016656 29 ALLHSSSCFFFILSAYFVVLPLRDEGAIS-LG------LSK--LPGLFVGSLILTLIAAPVSTLIFSLPNL-SKAKALVL 98 (385)
Q Consensus 29 ~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~G------ae~--lp~l~~~~~~~~~l~~p~y~~L~~~~r~-~r~~vl~~ 98 (385)
.+....+..|+...+++...+.......+ .| .+. ..++.......+.+..++.|+++| |+ |||+++.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~d--r~~g~r~~~~~ 90 (524)
T 2xut_A 13 QIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIAD--RFFGKYNTILW 90 (524)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHT--TSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchHHHHH
Confidence 45556677788888888777777766554 56 332 234444445566888999999999 99 99999888
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHH
Q 016656 99 IHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWV 178 (385)
Q Consensus 99 ~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~ 178 (385)
....+++..+++++... + .| ++++ .|++ .
T Consensus 91 ~~~~~~~~~~~~~~~~~-~-----------------------------------------~~----~~~~--~~~l---~ 119 (524)
T 2xut_A 91 LSLIYCVGHAFLAIFEH-S-----------------------------------------VQ----GFYT--GLFL---I 119 (524)
T ss_dssp HHHHHHHHHHHHHHTSS-C-----------------------------------------HH----HHHH--HHHH---H
T ss_pred HHHHHHHHHHHHHHhcc-c-----------------------------------------HH----HHHH--HHHH---H
Confidence 77776666555444210 0 12 1222 1232 2
Q ss_pred HHHHHHHHHHHHHHHHhhCCcchhh---HHHHHHHHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 179 ALLNLITISSTWARVIDVMDSESGS---RLFGFIGAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 179 ~~~~~~~~slfWa~~~di~~~~eak---R~fgligag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
.+..........++++|.++++++. ..|++...+.++|.++||.+++.+. ..|.. .+.+.+++.+++...
T Consensus 120 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 120 ALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 3334445668889999999999884 4577799999999999999988886 34553 555555554444433
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.36 E-value=1.1e-05 Score=78.93 Aligned_cols=174 Identities=9% Similarity=0.022 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCC--CchhHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNL--SKAKALVLIHRF 102 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~--~r~~vl~~~~~~ 102 (385)
+.++...+..++...+++.....-+.+..+ .|.+.. ..+........++..++.++++| |+ +||+.+.+....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~~~~ 329 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSD--KVFRGNRGATGVFFMT 329 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HTSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCchhHHHHHHH
Confidence 456666677777777877777777777766 555433 23343444566888899999999 99 998887655444
Q ss_pred HH-HHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHH
Q 016656 103 FS-VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALL 181 (385)
Q Consensus 103 f~-~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~ 181 (385)
.+ +.++++.+ .. + ...| ... +........
T Consensus 330 ~~~~~~~~~~~----~~-----~--------------------------------~~~~-----~~~----~~~~~~g~~ 359 (451)
T 1pw4_A 330 LVTIATIVYWM----NP-----A--------------------------------GNPT-----VDM----ICMIVIGFL 359 (451)
T ss_dssp HHHHHHHHTTS----CC-----T--------------------------------TCHH-----HHH----HHHHHHHHH
T ss_pred HHHHHHHHHHH----hc-----c--------------------------------cCHH-----HHH----HHHHHHHHH
Confidence 32 22221111 00 0 0012 211 111112222
Q ss_pred HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhH-HHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHHHHHHh
Q 016656 182 NLITISSTWARVIDVMDSESGSRLFGFIGAGATL-GQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQSSKGIY 253 (385)
Q Consensus 182 ~~~~~slfWa~~~di~~~~eakR~fgligag~~l-G~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~~~~l~ 253 (385)
........+.++.|.++++++.+.+|+.+...++ |..+||.+++.+. ..|.. .+++.+++.+++..+...+.
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 360 IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344557789999999999999999999999999 9999999999887 44543 55555555555555555543
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.14 E-value=2.3e-05 Score=77.34 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=47.9
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHH-HHHHhHHHhhhHHHHHHHH-hHhHH-HHHHHHHHHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFI-GAGATLGQLFGSLFAAGMA-FLGPY-LLLFAACLMELAAQS 248 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgli-gag~~lG~I~G~~l~~~la-~~g~~-lll~aa~l~~l~~~~ 248 (385)
....|++++|.++++.+.+.+|+. +.+.++|.++||.+++.+. ..|.. .+.+.+++..+++..
T Consensus 330 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~ 395 (417)
T 2cfq_A 330 LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 345699999999999999999994 8889999999999999876 44543 555555554445444
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.89 E-value=0.0064 Score=60.13 Aligned_cols=124 Identities=10% Similarity=0.001 Sum_probs=81.2
Q ss_pred HHHHHHH-HHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCc
Q 016656 67 FVGSLIL-TLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDP 145 (385)
Q Consensus 67 ~~~~~~~-~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (385)
..+++.+ +++-+++.|+++| |+|||+++.+....+.+.-++.++........ .+
T Consensus 60 ~~s~~~~G~~iG~~~~G~laD--r~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~-----------------~~------ 114 (491)
T 4gc0_A 60 CVASALIGCIIGGALGGYCSN--RFGRRDSLKIAAVLFFISGVGSAWPELGFTSI-----------------NP------ 114 (491)
T ss_dssp HHHTHHHHHHHHHHHHHHHHH--HTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCS-----------------SS------
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----------------cc------
Confidence 3344444 4777899999999 99999999998888766655555422110000 00
Q ss_pred chhcccCCCCCCCcccccc-chhhhhhHHHHHHHHHH-HHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHH
Q 016656 146 KAAVDQGSTANSADWGDHG-WFYVSVRMGFFLWVALL-NLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLF 223 (385)
Q Consensus 146 ~~~~~~~~~~~~~~w~~~~-w~~~~~~~lfyiw~~~~-~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l 223 (385)
..........+ |.+. +.|.+ .++ ..........+++|..+++++.+.-++...+..+|.++++.+
T Consensus 115 --------~~~~~~~~a~~~~~l~-~~R~l----~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~ 181 (491)
T 4gc0_A 115 --------DNTVPVYLAGYVPEFV-IYRII----GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181 (491)
T ss_dssp --------SSSCCGGGGGCHHHHH-HHHHH----HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------hhHHHHHHhhhHHHHH-HHHHH----HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhc
Confidence 00000001111 1222 34654 444 445566889999999999999999999999999999999988
Q ss_pred HHHHH
Q 016656 224 AAGMA 228 (385)
Q Consensus 224 ~~~la 228 (385)
+..+.
T Consensus 182 ~~~~~ 186 (491)
T 4gc0_A 182 NYFIA 186 (491)
T ss_dssp HHHHH
T ss_pred chhhc
Confidence 77765
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=97.86 E-value=0.00036 Score=67.97 Aligned_cols=157 Identities=11% Similarity=0.016 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhh-hhc-cCccch-h-HHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEG-AIS-LGLSKL-P-GLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFF 103 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l-~~s-~Gae~l-p-~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f 103 (385)
+++....+..|+....+.......+.+ ..+ .|.+.. . .+.......+.+..++.++++| |++||+++.+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--r~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLIS--RFAPHKVLAAYALIA 335 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH--HhcchHHHHHHHHHH
Confidence 345556666677677676666666776 545 365433 3 3333444566888999999999 999999987766655
Q ss_pred HHHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHH
Q 016656 104 SVSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNL 183 (385)
Q Consensus 104 ~~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~ 183 (385)
++.++++.+.. . .| ... .+ ........
T Consensus 336 ~~~~~~~~~~~--~-----------------------------------------~~-----~~~----~~-~~~g~~~~ 362 (438)
T 3o7q_A 336 MALCLISAFAG--G-----------------------------------------HV-----GLI----AL-TLCSAFMS 362 (438)
T ss_dssp HHHHHHHHHCC--H-----------------------------------------HH-----HHH----HH-HHHHHHHT
T ss_pred HHHHHHHHHcC--C-----------------------------------------cH-----HHH----HH-HHHHHHHH
Confidence 44443332210 0 11 111 11 11233334
Q ss_pred HHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH-hHh-HH-HHHHHHHH
Q 016656 184 ITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA-FLG-PY-LLLFAACL 241 (385)
Q Consensus 184 ~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la-~~g-~~-lll~aa~l 241 (385)
......++++.|.++++ +++..++.. .+.+|..+||.+.+.+. ..| .. .+.+.+++
T Consensus 363 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~ 421 (438)
T 3o7q_A 363 IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_dssp THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHH
T ss_pred HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 45568899999998855 677777666 56799999999999887 456 43 44444433
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.78 E-value=0.00094 Score=66.21 Aligned_cols=148 Identities=11% Similarity=0.096 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHhhhchhhhhhccCccch-hH-HHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHHHHHH
Q 016656 31 LHSSSCFFFILSAYFVVLPLRDEGAISLGLSKL-PG-LFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFSVSLL 108 (385)
Q Consensus 31 l~~~l~~Flil~~y~ilrpv~d~l~~s~Gae~l-p~-l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~~~~l 108 (385)
.......|....+++.+....+.+....|.+.. .. .......+.++..++.+.++| |+|||+.+.......++..+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d--r~Grr~~~~~~~~~~~~~~~ 357 (491)
T 4gc0_A 280 IGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVD--KFGRKPLQIIGALGMAIGMF 357 (491)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH--hhcCcchhccchHHHHHHHH
Confidence 334444555556666655555555555444333 22 222334556788888999999 99999999887777766666
Q ss_pred HHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHHHHHH
Q 016656 109 VFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLITISS 188 (385)
Q Consensus 109 lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~~~sl 188 (385)
.++........ .| ... ...++....++.....+
T Consensus 358 ~l~~~~~~~~~---------------------------------------~~-----~~~---~~~~~~~~~~~~~~~~~ 390 (491)
T 4gc0_A 358 SLGTAFYTQAP---------------------------------------GI-----VAL---LSMLFYVAAFAMSWGPV 390 (491)
T ss_dssp HHHHHHHTTCC---------------------------------------HH-----HHH---HHHHHHHHHHHTTTTHH
T ss_pred HHHHHHhcccc---------------------------------------hH-----HHH---HHHHHHHHHHHhHHHHH
Confidence 65554442210 11 111 01222233344444468
Q ss_pred HHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHH
Q 016656 189 TWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGM 227 (385)
Q Consensus 189 fWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~l 227 (385)
.|.+++|++|++-|....|+..+.+.+|.++++.+...+
T Consensus 391 ~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l 429 (491)
T 4gc0_A 391 CWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMM 429 (491)
T ss_dssp HHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999998776655
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.76 E-value=7.1e-05 Score=74.53 Aligned_cols=63 Identities=3% Similarity=-0.048 Sum_probs=46.7
Q ss_pred HHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhHhH-HHHHHHHHHHHHHHHH
Q 016656 186 ISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFLGP-YLLLFAACLMELAAQS 248 (385)
Q Consensus 186 ~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~g~-~lll~aa~l~~l~~~~ 248 (385)
....+.+++|.++++++.+..|+.+...++|..+|+.+++.+...+. ..+.+.+++..++...
T Consensus 404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 45778999999999999999999999999999999999877664443 3333333333333333
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=96.59 E-value=0.0024 Score=61.01 Aligned_cols=151 Identities=11% Similarity=-0.002 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhchhhhhhc-cCccch--hHHHHHHHHHHHHHHHHHHHhhCCCCCCchhHHHHHHHHHH
Q 016656 28 SALLHSSSCFFFILSAYFVVLPLRDEGAIS-LGLSKL--PGLFVGSLILTLIAAPVSTLIFSLPNLSKAKALVLIHRFFS 104 (385)
Q Consensus 28 ~~~l~~~l~~Flil~~y~ilrpv~d~l~~s-~Gae~l--p~l~~~~~~~~~l~~p~y~~L~~~~r~~r~~vl~~~~~~f~ 104 (385)
+++....+..++...++......-+.+..+ .|.+.. ..+.......+++..++.+++.| |+++ +..........
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~--r~~~-~~~~~~~~~~~ 275 (375)
T 2gfp_A 199 SGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNK--RFST-LMWQSVICCLL 275 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTT--HHHH-HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHH
Confidence 345566666677777777776666666555 444322 23333444556788889999999 8876 22211111011
Q ss_pred HHHHHHHHHHhhhccccccchhhhhhhhhhhhccccCCCCcchhcccCCCCCCCccccccchhhhhhHHHHHHHHHHHHH
Q 016656 105 VSLLVFFLLWQSSSIGYLSKLESVSHLESLDAVSSNAKEDPKAAVDQGSTANSADWGDHGWFYVSVRMGFFLWVALLNLI 184 (385)
Q Consensus 105 ~~~llf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~lfyiw~~~~~~~ 184 (385)
.....+........ + .| .+. +..+........
T Consensus 276 ~~~~~~~~~~~~~~-----~----------------------------------~~-----~~~----~~~~l~g~~~~~ 307 (375)
T 2gfp_A 276 AGLLMWIPDWFGVM-----N----------------------------------VW-----TLL----VPAALFFFGAGM 307 (375)
T ss_dssp TSSSSSHHHHHHHH-----H----------------------------------HH-----HHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccc-----c----------------------------------HH-----HHH----HHHHHHHHHHHH
Confidence 11111111110000 0 12 211 111111222233
Q ss_pred HHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHHhH
Q 016656 185 TISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMAFL 230 (385)
Q Consensus 185 ~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la~~ 230 (385)
.....++++.|.++ +++.+.+|+.+...++|..+||.+.+.+...
T Consensus 308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~ 352 (375)
T 2gfp_A 308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQT 352 (375)
T ss_dssp TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH
T ss_pred hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44577889999997 8999999999999999999999998887643
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=94.75 E-value=0.025 Score=56.47 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCcchhhHHHHHHHHHHhHHHhhhHHHHHHHH
Q 016656 179 ALLNLITISSTWARVIDVMDSESGSRLFGFIGAGATLGQLFGSLFAAGMA 228 (385)
Q Consensus 179 ~~~~~~~~slfWa~~~di~~~~eakR~fgligag~~lG~I~G~~l~~~la 228 (385)
...........+.+++|..+++++.+.+|+.+...++|.++||.+.+.+.
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~ 465 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVK 465 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445566788999999999999999999999999999999999988764
No 15
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D* 3p4p_D* 3p4q_D* 3p4r_D* 3p4s_D*
Probab=25.34 E-value=34 Score=27.95 Aligned_cols=22 Identities=18% Similarity=0.545 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHhHHHhhhHHHH
Q 016656 203 SRLFGFIGAGATLGQLFGSLFA 224 (385)
Q Consensus 203 kR~fgligag~~lG~I~G~~l~ 224 (385)
.-+.+++||||...++++|.+.
T Consensus 12 Pi~W~LFgAGGm~sAl~~Pvli 33 (119)
T 1kf6_D 12 PVFWGLFGAGGMWSAIIAPVMI 33 (119)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHH
T ss_pred CchheeeccchHHHHHHHHHHH
Confidence 3478999999999999999853
Done!