BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 016657
(385 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter
hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
Length = 1375
Score = 175 bits (444), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/191 (45%), Positives = 113/191 (59%), Gaps = 3/191 (1%)
Query: 154 DGSQTKKRCAWVTPNTDPC---YAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAIL 210
+G + K RCAW T + Y +HD EWG P+H+DKKLFE LVL G + L+W IL
Sbjct: 780 EGVREKVRCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGLSWITIL 839
Query: 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFG 270
KR FR F FDP V+ +E K+ + + K+ A I NA+ V EFG
Sbjct: 840 KKREAFRVAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMAVQREFG 899
Query: 271 SFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAG 330
SF+ YIW FV KPI++ F +P TP +D I+KDL +RGF+ VG T +Y+ MQ G
Sbjct: 900 SFDKYIWGFVGGKPIINAFESIADLPASTPLSDKIAKDLKKRGFKFVGTTTMYAMMQSIG 959
Query: 331 VTNDHLTSCFR 341
+ NDHLTSCF+
Sbjct: 960 MVNDHLTSCFK 970
>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12)
GN=tag PE=1 SV=1
Length = 187
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/180 (41%), Positives = 108/180 (60%), Gaps = 2/180 (1%)
Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
+RC WV+ DP Y A+HD EWGVP D KKLFE++ L G + L+W +L KR +R
Sbjct: 2 ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 220 FVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSF 279
F FDP+ V+ + E+ + A + K++AII NAR ++ F +++WSF
Sbjct: 60 FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFVWSF 119
Query: 280 VSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSC 339
V+H+P V++ ++P T +D +SK L +RGF+ VG TI YSFMQ G+ NDH+ C
Sbjct: 120 VNHQPQVTQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179
>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1
Length = 185
Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 102/179 (56%), Gaps = 2/179 (1%)
Query: 161 RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVF 220
RC WV + Y +HD+EWG P D +KLFE + L G + L+W +L KR +RE F
Sbjct: 4 RCPWVGEQS--IYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYREAF 61
Query: 221 VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFV 280
FDP ++K+ + A + + KL AI++NA+ + +F+++IWSFV
Sbjct: 62 HQFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVKNAKAYLAMEKCGENFSDFIWSFV 121
Query: 281 SHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGVTNDHLTSC 339
+HKPIV+ R VP KT + +SK L +RGF +G T Y+FMQ G+ +DHL C
Sbjct: 122 NHKPIVNDVPDLRSVPTKTEVSKALSKALKKRGFVFIGETTCYAFMQSMGLVDDHLNDC 180
>sp|Q5U2S3|ZUFSP_RAT Zinc finger with UFM1-specific peptidase domain protein OS=Rattus
norvegicus GN=Zufsp PE=2 SV=1
Length = 577
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 158 TKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELL----VLSGALSELTWPAILSKR 213
T RC W++ D +++F D+ WG + + L L V S L ++ P I +
Sbjct: 334 TDVRCVWLSTVVDHFHSSFGDKGWGCGYRNFQMLLSSLLQNEVYSDCLKGMSVPCIPKIQ 393
Query: 214 HIFREVF-VGFDPIAVSKLNEK----KLLAAGSAASSLLSELKLRAII 256
+ + + GFDP S+LN K K +LL+ LK++ I
Sbjct: 394 SMIEDAWNEGFDPQGASQLNNKLQGTKAWIGACEIYTLLTSLKVKCRI 441
>sp|Q3T9Z9|ZUFSP_MOUSE Zinc finger with UFM1-specific peptidase domain protein OS=Mus
musculus GN=Zufsp PE=2 SV=2
Length = 577
Score = 39.7 bits (91), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 158 TKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELL----VLSGALSELTWPAILSKR 213
T RC W++ D +++F D+ WG + + L L V L + P I +
Sbjct: 334 TDVRCVWLSTVVDHFHSSFGDKGWGCGYRNFQMLLSSLLQSDVYGDCLKGMAVPCIPKIQ 393
Query: 214 HIFREVF-VGFDPIAVSKLNEK----KLLAAGSAASSLLSELKLRAII 256
+ + + GFDP S+LN K K +LL+ L+++ I
Sbjct: 394 SMIEDAWNEGFDPQGASQLNNKLQGTKAWIGACEIYTLLTSLRVKCRI 441
>sp|Q3SWY8|ZUFSP_BOVIN Zinc finger with UFM1-specific peptidase domain protein OS=Bos
taurus GN=ZUFSP PE=2 SV=1
Length = 579
Score = 36.6 bits (83), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 158 TKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGA----LSELTWPAILSKR 213
T R W++ D +++F D+ WG + + L L+ + A L ++ P I +
Sbjct: 336 TDVRRVWLSAGVDHFHSSFGDKGWGCGYRNFQMLLSSLLQNDAYDDSLKGMSVPCIPKIQ 395
Query: 214 HIFREVF-VGFDPIAVSKLNEK----KLLAAGSAASSLLSELKLRAII 256
+ + + GFDP S+LN+K K +LL+ L+++ I
Sbjct: 396 SMIEDAWKEGFDPQGASQLNDKLQGTKAWIGACEIYTLLTSLRIKCRI 443
>sp|Q30NZ0|LEUC_SULDN 3-isopropylmalate dehydratase large subunit OS=Sulfurimonas
denitrificans (strain ATCC 33889 / DSM 1251) GN=leuC
PE=3 SV=1
Length = 419
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 4/81 (4%)
Query: 289 FRYPRQVPVKT---PKADVISKDLVRRGFRSVG-PTIIYSFMQVAGVTNDHLTSCFRFQE 344
F+ P + V P KD++ R +G +Y ++ G T +HL+ RF
Sbjct: 154 FKVPESIKVNLSGKPSKYTTGKDIILEIIRLIGVDGALYKTLEFTGSTIEHLSIDDRFSM 213
Query: 345 CINAAEVKEENGIPDNDENKK 365
C A E ++GI DE K
Sbjct: 214 CNMAIEAGAKSGIVAYDETTK 234
>sp|P40848|XRN2_SCHPO 5'-3' exoribonuclease 2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=dhp1 PE=1 SV=1
Length = 991
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 20/128 (15%)
Query: 153 PDGSQTKKRCAWVTPNTDPCYAAF-----------HDEEWGVPVHDDKKLFELLVLSGAL 201
PDG++ + + PN C + H E+ P +D+ + + + +
Sbjct: 30 PDGTEIEPDLSLPNPNGVECDNLYLDMNGIVHPCSHPEDRPAPETEDEMMVAVFEYTDRI 89
Query: 202 SELTWPAILSKRHIFREVFVGFDPIA-VSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260
+ P L +F+ D +A +K+N+++ S+ + L E +L+A IE A+
Sbjct: 90 LAMVRPRQL--------LFIAIDGVAPRAKMNQQRSRRFRSSREAALKEEELQAFIEEAK 141
Query: 261 QISKVIDE 268
Q IDE
Sbjct: 142 QQGIPIDE 149
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,002,842
Number of Sequences: 539616
Number of extensions: 5707403
Number of successful extensions: 14567
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 14363
Number of HSP's gapped (non-prelim): 260
length of query: 385
length of database: 191,569,459
effective HSP length: 119
effective length of query: 266
effective length of database: 127,355,155
effective search space: 33876471230
effective search space used: 33876471230
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)