Query 016657
Match_columns 385
No_of_seqs 165 out of 1152
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 17:15:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/016657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/016657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jg6_A DNA-3-methyladenine gly 100.0 1.3E-89 4.4E-94 626.3 18.4 183 159-343 1-183 (186)
2 2ofk_A 3-methyladenine DNA gly 100.0 9.3E-89 3.2E-93 619.5 18.9 183 159-343 1-183 (183)
3 3n0u_A Probable N-glycosylase/ 97.5 0.0002 7E-09 66.3 7.9 117 187-342 46-168 (219)
4 1orn_A Endonuclease III; DNA r 96.4 0.031 1E-06 51.4 11.8 102 191-330 33-135 (226)
5 1kea_A Possible G-T mismatches 96.4 0.023 7.9E-07 51.9 10.6 102 191-330 35-136 (221)
6 2h56_A DNA-3-methyladenine gly 96.3 0.027 9.3E-07 51.9 11.0 129 169-330 29-160 (233)
7 2abk_A Endonuclease III; DNA-r 96.2 0.01 3.5E-07 53.6 7.4 101 191-329 29-129 (211)
8 3n5n_X A/G-specific adenine DN 95.9 0.084 2.9E-06 50.8 12.4 104 188-329 46-149 (287)
9 2yg9_A DNA-3-methyladenine gly 95.8 0.06 2.1E-06 49.5 10.8 128 169-329 38-166 (225)
10 1pu6_A 3-methyladenine DNA gly 95.8 0.068 2.3E-06 48.8 11.1 108 191-330 30-142 (218)
11 3fhg_A Mjogg, N-glycosylase/DN 95.6 0.03 1E-06 50.7 7.7 111 187-331 29-139 (207)
12 1kg2_A A/G-specific adenine gl 95.6 0.074 2.5E-06 48.5 10.2 100 191-329 30-129 (225)
13 3s6i_A DNA-3-methyladenine gly 95.4 0.11 3.6E-06 48.0 10.6 128 169-331 25-162 (228)
14 4b21_A Probable DNA-3-methylad 95.0 0.13 4.3E-06 47.7 9.9 130 169-330 36-172 (232)
15 3fsp_A A/G-specific adenine gl 94.5 0.16 5.4E-06 49.3 9.8 102 189-329 37-138 (369)
16 3i0w_A 8-oxoguanine-DNA-glycos 92.9 1 3.5E-05 42.7 12.0 128 169-331 94-234 (290)
17 2jhn_A ALKA, 3-methyladenine D 92.6 0.42 1.4E-05 45.3 8.8 128 163-330 90-232 (295)
18 3fhf_A Mjogg, N-glycosylase/DN 91.7 0.57 1.9E-05 43.1 8.4 108 187-331 40-147 (214)
19 4e9f_A Methyl-CPG-binding doma 90.2 1 3.4E-05 39.8 8.1 56 192-249 32-87 (161)
20 2d3d_A VTS1 protein; RNA bindi 82.6 2 7E-05 35.0 5.4 47 214-262 31-77 (88)
21 2b6g_A VTS1P; alpha-helix, pen 79.9 3.8 0.00013 35.1 6.3 54 206-262 55-108 (119)
22 1mpg_A ALKA, 3-methyladenine D 79.8 8.1 0.00028 36.1 9.2 122 181-337 103-241 (282)
23 1ucv_A Ephrin type-A receptor 77.9 3.3 0.00011 32.2 5.0 46 214-261 20-68 (81)
24 1v38_A SAM-domain protein sams 77.5 2.6 8.9E-05 32.7 4.3 43 214-258 25-70 (78)
25 2es6_A VTS1P; SAM domain, prot 74.5 3.9 0.00013 34.3 4.8 46 214-261 44-89 (101)
26 3k1r_B Usher syndrome type-1G 71.9 7 0.00024 30.1 5.4 44 214-262 19-62 (74)
27 1b0x_A Protein (EPHA4 receptor 71.7 5.4 0.00019 31.8 4.9 46 214-261 39-87 (94)
28 1b4f_A EPHB2; SAM domain, EPH 71.3 5.8 0.0002 30.6 4.9 46 215-262 25-73 (82)
29 2eao_A Ephrin type-B receptor 69.9 5.8 0.0002 31.9 4.8 45 214-260 35-82 (99)
30 2dl0_A SAM and SH3 domain-cont 69.0 2.6 8.8E-05 34.3 2.5 43 214-258 36-81 (97)
31 2kso_A Ephrin type-A receptor 68.6 6.5 0.00022 30.8 4.6 45 214-260 29-76 (82)
32 1x40_A ARAP2; ASAP-related pro 66.9 4.5 0.00015 32.2 3.4 45 214-260 28-75 (91)
33 3h8m_A Ephrin type-A receptor 66.6 8.2 0.00028 30.9 5.0 45 214-260 38-85 (90)
34 2k4p_A Phosphatidylinositol-3, 65.1 7.5 0.00026 31.0 4.4 42 214-257 39-83 (86)
35 2xhi_A N-glycosylase/DNA lyase 63.7 17 0.00058 35.6 7.5 129 170-330 132-275 (360)
36 3kka_C Ephrin type-A receptor 62.5 9 0.00031 30.4 4.4 43 214-258 34-79 (86)
37 2e8n_A Ephrin type-A receptor 62.2 5 0.00017 31.6 2.9 46 214-261 25-73 (88)
38 3hil_A Ephrin type-A receptor 60.5 6.2 0.00021 31.1 3.1 42 214-257 36-80 (82)
39 2kg5_A ARF-GAP, RHO-GAP domain 57.0 11 0.00037 30.7 4.1 43 214-258 39-84 (100)
40 2p5k_A Arginine repressor; DNA 55.0 12 0.00042 26.2 3.7 30 302-332 22-51 (64)
41 1oxj_A RNA-binding protein sma 54.4 16 0.00053 33.3 5.0 44 214-260 20-63 (173)
42 2ean_A Connector enhancer of k 52.0 22 0.00075 27.2 4.9 44 214-261 32-75 (83)
43 3sei_A Caskin-1; SAM domain, p 48.0 28 0.00095 29.9 5.5 46 215-262 93-141 (149)
44 3sei_A Caskin-1; SAM domain, p 47.8 17 0.00058 31.3 4.1 43 214-258 23-67 (149)
45 3bs5_B Connector enhancer of k 45.1 34 0.0011 25.8 5.0 43 214-260 28-70 (80)
46 1k94_A Grancalcin; penta-EF-ha 44.0 14 0.00049 29.6 2.9 62 209-277 65-128 (165)
47 2qkq_A Ephrin type-B receptor 41.8 19 0.00066 27.7 3.2 45 214-260 28-75 (83)
48 2ovk_B RLC, myosin regulatory 41.2 32 0.0011 26.9 4.5 61 213-280 15-75 (153)
49 2lmr_A ODIN, ankyrin repeat an 40.9 15 0.0005 30.2 2.4 43 214-258 42-89 (101)
50 2gle_A Neurabin-1; SAM domain, 39.8 57 0.0019 24.2 5.5 45 214-260 22-68 (74)
51 1juo_A Sorcin; calcium-binding 39.2 18 0.00061 30.2 2.8 64 209-279 98-163 (198)
52 2f3n_A SH3 and multiple ankyri 31.5 35 0.0012 25.8 3.1 45 215-261 21-67 (76)
53 2qac_A Myosin A tail domain in 31.1 32 0.0011 26.7 2.9 57 213-276 83-141 (146)
54 2yvq_A Carbamoyl-phosphate syn 30.3 34 0.0012 28.9 3.1 32 301-332 38-69 (143)
55 3bs7_A Protein aveugle; sterIl 28.0 1E+02 0.0036 22.9 5.2 44 216-261 25-70 (78)
56 2lv7_A Calcium-binding protein 27.9 19 0.00065 28.2 1.0 44 214-257 36-79 (100)
57 2kiv_A Ankyrin repeat and ster 27.5 39 0.0013 28.8 3.0 42 215-258 28-74 (148)
58 2b1u_A Calmodulin-like protein 27.5 31 0.0011 23.5 2.0 39 213-251 5-43 (71)
59 2ke7_A Ankyrin repeat and ster 26.3 52 0.0018 26.5 3.4 46 214-261 35-85 (103)
60 2lc0_A Putative uncharacterize 24.6 24 0.00083 30.1 1.2 29 299-328 83-111 (132)
61 2mys_B Myosin; muscle protein, 24.5 41 0.0014 26.7 2.5 60 213-279 24-84 (166)
62 1eh2_A EPS15; calcium binding, 24.1 28 0.00097 27.8 1.4 41 203-244 4-44 (106)
63 3j04_B Myosin regulatory light 23.4 25 0.00084 27.1 0.9 62 212-280 5-66 (143)
64 2ktg_A Calmodulin, putative; e 23.3 32 0.0011 24.5 1.5 45 212-256 12-56 (85)
65 3bq7_A Diacylglycerol kinase d 22.5 86 0.003 23.9 3.9 44 216-261 27-72 (81)
66 3l78_A Regulatory protein SPX; 22.5 74 0.0025 25.8 3.7 42 201-247 48-91 (120)
67 2jjz_A Ionized calcium-binding 21.1 63 0.0022 26.2 3.0 65 210-279 46-112 (150)
68 1kdx_B CREB; complex (transcri 21.0 12 0.00042 24.8 -1.1 17 207-223 7-23 (28)
69 3gkx_A Putative ARSC family re 20.9 32 0.0011 28.2 1.2 45 199-247 50-97 (120)
70 2kz2_A Calmodulin, CAM; TR2C, 20.7 30 0.001 26.1 0.9 44 213-256 28-71 (94)
71 2p4g_A Hypothetical protein; p 20.5 68 0.0023 29.5 3.4 29 304-333 178-210 (270)
No 1
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=100.00 E-value=1.3e-89 Score=626.31 Aligned_cols=183 Identities=32% Similarity=0.624 Sum_probs=179.9
Q ss_pred CCCCCCCCCCCChhhhhhhhcCCCccccchHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 016657 159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA 238 (385)
Q Consensus 159 ~~RC~Wat~~sdply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~ 238 (385)
++||.|++ +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||+|+|+||++
T Consensus 1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~ 78 (186)
T 2jg6_A 1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR 78 (186)
T ss_dssp CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence 46999996 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccc
Q 016657 239 AGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVG 318 (385)
Q Consensus 239 Lm~d~~IIRNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVG 318 (385)
||+|++|||||+||+|||+|||++++|++|||||++|||+|++++||+|++++..+||++||+|++|||+||||||+|||
T Consensus 79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvG 158 (186)
T 2jg6_A 79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLG 158 (186)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCC
T ss_pred HhcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccccCcccccchhh
Q 016657 319 PTIIYSFMQVAGVTNDHLTSCFRFQ 343 (385)
Q Consensus 319 PTtvYSFMQAvGivNDHlv~Cfr~~ 343 (385)
|||||+||||+||||||+++|+++.
T Consensus 159 pt~~YafmQA~G~vndH~~~C~~~~ 183 (186)
T 2jg6_A 159 PVTVFSFLEAAGLYDAHLKDCPSKP 183 (186)
T ss_dssp HHHHHHHHHHTTSEECCCTTCTTCC
T ss_pred hHHHHHHHHHhcccCccccCccccC
Confidence 9999999999999999999998874
No 2
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=100.00 E-value=9.3e-89 Score=619.47 Aligned_cols=183 Identities=40% Similarity=0.777 Sum_probs=179.3
Q ss_pred CCCCCCCCCCCChhhhhhhhcCCCccccchHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 016657 159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA 238 (385)
Q Consensus 159 ~~RC~Wat~~sdply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~ 238 (385)
++||.|++ +||+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||+|+|+||++
T Consensus 1 ~~RC~W~~--~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~ 78 (183)
T 2ofk_A 1 MQRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVER 78 (183)
T ss_dssp -CCCTTCC--SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHH
Confidence 36999996 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccc
Q 016657 239 AGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVG 318 (385)
Q Consensus 239 Lm~d~~IIRNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVG 318 (385)
||+|++|||||+||+|||+|||++++|++|||||++|||+|++++||+|++.+..+||++||+|++|||+||||||+|||
T Consensus 79 Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvG 158 (183)
T 2ofk_A 79 LLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVG 158 (183)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCC
T ss_pred HhcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHhccccCcccccchhh
Q 016657 319 PTIIYSFMQVAGVTNDHLTSCFRFQ 343 (385)
Q Consensus 319 PTtvYSFMQAvGivNDHlv~Cfr~~ 343 (385)
|||||+||||+||||||+++|++++
T Consensus 159 pT~~yafmQA~G~VndH~~~C~~~~ 183 (183)
T 2ofk_A 159 TTICYSFMQACGLVNDHITGCFCHP 183 (183)
T ss_dssp HHHHHHHHHHTTSEECCCTTSTTCC
T ss_pred hHHHHHHHHHcCcccCcccCCCCCC
Confidence 9999999999999999999998763
No 3
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=97.51 E-value=0.0002 Score=66.26 Aligned_cols=117 Identities=15% Similarity=0.164 Sum_probs=87.4
Q ss_pred chHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccccccc-chhHHHHHHHHHHHHHHH
Q 016657 187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLL-SELKLRAIIENARQISKV 265 (385)
Q Consensus 187 DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIR-Nr~KI~AVI~NArailkI 265 (385)
.+.-.||.|+..++.+..+|..+.+-.+.+ |+.++.+++++|++++...| +| ++.|.+.|+++|+.+
T Consensus 46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G-~Rf~~~KA~~I~~~a~~i--- 113 (219)
T 3n0u_A 46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVG-HRYPQKRAEFIVENRKLL--- 113 (219)
T ss_dssp CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTT-CSSHHHHHHHHHHHGGGT---
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH---
Confidence 566799999999999999999988655555 78999999999999988878 46 889999999999876
Q ss_pred HHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHHHhcc-----ccCcccccc
Q 016657 266 IDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGV-----TNDHLTSCF 340 (385)
Q Consensus 266 ~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQAvGi-----vNDHlv~Cf 340 (385)
|+|.++. ++ ++ ...-++|.+ .++-|||.|+..||...|. |++|+....
T Consensus 114 ----g~l~~~~----~~-~~-----------------~~~r~~L~~-~l~GVG~kTA~~vL~~~g~~~~~~VDthv~Ri~ 166 (219)
T 3n0u_A 114 ----GKLKNLV----KG-DP-----------------FQSREFLVR-NAKGIGWKEASHFLRNTGVEDLAILDKHVLRLM 166 (219)
T ss_dssp ----TTHHHHH----HS-CH-----------------HHHHHHHHH-HSTTCCHHHHHHHHHTTTCCSCCCCCHHHHHHH
T ss_pred ----HHHHHHh----cC-Cc-----------------HHHHHHHHH-hCCCCCHHHHHHHHHHcCCCCeeeecHHHHHHH
Confidence 5554443 11 11 134445553 2899999999999987774 455555444
Q ss_pred hh
Q 016657 341 RF 342 (385)
Q Consensus 341 r~ 342 (385)
.+
T Consensus 167 ~r 168 (219)
T 3n0u_A 167 KR 168 (219)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 4
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=96.40 E-value=0.031 Score=51.37 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhcC
Q 016657 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFG 270 (385)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~G 270 (385)
.||.|+-+++..-.+|..+.+-...|.+.|- +|+.|+..++++|++++..-|+- +.|.+.++.=|+.+.+ +||
T Consensus 33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fp--t~~~la~a~~~~l~~~i~~~G~~--~~KA~~l~~~a~~i~~---~~~ 105 (226)
T 1orn_A 33 PFELLIAVVLSAQCTDALVNKVTKRLFEKYR--TPHDYIAVPLEELEQDIRSIGLY--RNKARNIQKLCAMLID---KYN 105 (226)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCC--SHHHHHSSCHHHHHHHTGGGSSH--HHHHHHHHHHHHHHHH---HST
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCh--HHHHHHHHHHHHHHHH---HhC
Confidence 6999999999999999999998888888874 89999999999999988766654 4677778887877653 332
Q ss_pred CHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHHH-hc
Q 016657 271 SFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQV-AG 330 (385)
Q Consensus 271 SF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQA-vG 330 (385)
+ ++|. .-++|. .++.|||.|+..+|.- .|
T Consensus 106 g----------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~a~g 135 (226)
T 1orn_A 106 G----------------------EVPR-------DRDELM--KLPGVGRKTANVVVSVAFG 135 (226)
T ss_dssp T----------------------SCCS-------CHHHHT--TSTTCCHHHHHHHHHHHHC
T ss_pred C----------------------CcHH-------HHHHHH--HCCCccHHHHHHHHHHHCC
Confidence 1 1121 123443 4788999998888764 34
No 5
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=96.36 E-value=0.023 Score=51.86 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhcC
Q 016657 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFG 270 (385)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~G 270 (385)
.||.|+-+++..-.+|..+.+-...|.+.| .+|+.|++.++++|++++..-|. .+.|.+.++.=|+.+++ ++|
T Consensus 35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~--~~~KA~~l~~~a~~i~~---~~~ 107 (221)
T 1kea_A 35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGL--SNQRAEQLKELARVVIN---DYG 107 (221)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSC--HHHHHHHHHHHHHHHHH---HHT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH---HhC
Confidence 799999999999999999999999998887 57999999999999998876664 46778888888887764 222
Q ss_pred CHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHHHhc
Q 016657 271 SFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAG 330 (385)
Q Consensus 271 SF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQAvG 330 (385)
+ ++|. .-++|. .++.|||.|+..+|.-++
T Consensus 108 g----------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~~~ 136 (221)
T 1kea_A 108 G----------------------RVPR-------NRKAIL--DLPGVGKYTCAAVMCLAF 136 (221)
T ss_dssp T----------------------SCCS-------CHHHHH--TSTTCCHHHHHHHHHHTT
T ss_pred C----------------------CchH-------HHHHHH--hCCCCcHHHHHHHHHHhc
Confidence 1 1221 112444 389999999998887554
No 6
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=96.33 E-value=0.027 Score=51.93 Aligned_cols=129 Identities=18% Similarity=0.171 Sum_probs=91.1
Q ss_pred CChhhhhhhhcCCCccccchHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCC--CHHHHhcCCHHHHHHhccccccc
Q 016657 169 TDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGF--DPIAVSKLNEKKLLAAGSAASSL 246 (385)
Q Consensus 169 sdply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~F--Dp~kVA~~~E~dIe~Lm~d~~II 246 (385)
.||.+..-.+..-|.+....+-.||.|+-.+...-.+|..+.+-...|.+.|..+ +|+.|+..++++|..+ -
T Consensus 29 ~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~~------G 102 (233)
T 2h56_A 29 QDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQA------G 102 (233)
T ss_dssp TCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHHT------T
T ss_pred cCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHHHHc------C
Confidence 5676654444333433323334899999999999999999999999999999777 9999999999998433 2
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHH
Q 016657 247 LSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFM 326 (385)
Q Consensus 247 RNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFM 326 (385)
-.++|.+.|+.=|+++.+ .+.++..+. .+| .+.+-++|. .++-|||-|+-.+|
T Consensus 103 ~~~~KA~~I~~~A~~i~~---~~~~~~~l~-----------------~~p-----~~~~~~~L~--~lpGIG~kTA~~il 155 (233)
T 2h56_A 103 VSKRKIEYIRHVCEHVES---GRLDFTELE-----------------GAE-----ATTVIEKLT--AIKGIGQWTAEMFM 155 (233)
T ss_dssp CCHHHHHHHHHHHHHHHT---TSSCHHHHT-----------------TSC-----HHHHHHHHH--TSTTCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh---CCCCHHHHh-----------------cCC-----HHHHHHHHH--hCCCcCHHHHHHHH
Confidence 477899999999988753 333333211 011 123445565 48999999999887
Q ss_pred HH-hc
Q 016657 327 QV-AG 330 (385)
Q Consensus 327 QA-vG 330 (385)
.- .|
T Consensus 156 l~alg 160 (233)
T 2h56_A 156 MFSLG 160 (233)
T ss_dssp HHTTC
T ss_pred HHhCC
Confidence 75 45
No 7
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=96.21 E-value=0.01 Score=53.64 Aligned_cols=101 Identities=19% Similarity=0.148 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhcC
Q 016657 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFG 270 (385)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~G 270 (385)
.||.|+-+++..-.+|..+.+-...|.+.| .+|+.|++.++++|++++..-|. .+.|.+.+++=|+.+.+ ++|
T Consensus 29 pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~--~~~KA~~l~~~a~~~~~---~~~ 101 (211)
T 2abk_A 29 PFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGL--YNSKAENIIKTCRILLE---QHN 101 (211)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTT--HHHHHHHHHHHHHHHHH---HTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH---HcC
Confidence 799999999999999999987766665544 46999999999999998776665 56788888888887754 232
Q ss_pred CHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHHHh
Q 016657 271 SFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVA 329 (385)
Q Consensus 271 SF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQAv 329 (385)
+ ++|. .-++|. .++.|||.|+..+|.-+
T Consensus 102 g----------------------~~~~-------~~~~L~--~l~GIG~~tA~~il~~~ 129 (211)
T 2abk_A 102 G----------------------EVPE-------DRAALE--ALPGVGRKTANVVLNTA 129 (211)
T ss_dssp T----------------------SCCS-------CHHHHH--HSTTCCHHHHHHHHHHH
T ss_pred C----------------------CchH-------HHHHHH--hCCCCChHHHHHHHHHH
Confidence 1 1221 112343 37899999998887754
No 8
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=95.88 E-value=0.084 Score=50.76 Aligned_cols=104 Identities=13% Similarity=0.202 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHH
Q 016657 188 DKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVID 267 (385)
Q Consensus 188 Dr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~ 267 (385)
.+-.||.|+-+++-.-.+|..|..-...|.+.|- +|+.|+..++++|++++..-|.- + |.+.+++=|+.+++
T Consensus 46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~--~-KA~~L~~~A~~i~~--- 117 (287)
T 3n5n_X 46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYY--S-RGRRLQEGARKVVE--- 117 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCH--H-HHHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCH--H-HHHHHHHHHHHHHH---
Confidence 4678999999999999999999999888888874 89999999999999998877765 3 78888888887653
Q ss_pred hcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHHHh
Q 016657 268 EFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVA 329 (385)
Q Consensus 268 E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQAv 329 (385)
+||+ ++|.. .++|.+. ++.|||.|+..+|.-+
T Consensus 118 ~~~g----------------------~~p~~-------~~~Ll~~-LpGIG~kTA~~iL~~a 149 (287)
T 3n5n_X 118 ELGG----------------------HMPRT-------AETLQQL-LPGVGRYTAGAIASIA 149 (287)
T ss_dssp HSTT----------------------CCCSS-------HHHHHHH-STTCCHHHHHHHHHHH
T ss_pred HhCC----------------------CCcHH-------HHHHHHH-cCCCCHHHHHHHHHHh
Confidence 4432 12221 2344332 6889999998887643
No 9
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.84 E-value=0.06 Score=49.46 Aligned_cols=128 Identities=22% Similarity=0.186 Sum_probs=91.8
Q ss_pred CChhhhhhhhcCCCc-cccchHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccccccc
Q 016657 169 TDPCYAAFHDEEWGV-PVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLL 247 (385)
Q Consensus 169 sdply~~YHD~EWG~-Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIR 247 (385)
.||.+..-.+.--|. +.....-.||.|+-.+.-.-.||..+.+-...|.+.|...+|+.|+..++++|..+. -
T Consensus 38 ~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~Lr~~G------~ 111 (225)
T 2yg9_A 38 RDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRGVG------L 111 (225)
T ss_dssp TSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHHHHTT------C
T ss_pred cCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHHHHCC------C
Confidence 688776655554444 333334489999999999999999999999999888887899999999999984432 3
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHH
Q 016657 248 SELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQ 327 (385)
Q Consensus 248 Nr~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQ 327 (385)
.+.|.+.|+.=|+.+.+ ...+|+. ..++| .+.+-++|. .++-|||-|+-.+|.
T Consensus 112 ~~~KA~~i~~lA~~~~~---g~~~l~~-----------------l~~~~-----~~e~~~~L~--~l~GIG~~TA~~ill 164 (225)
T 2yg9_A 112 SWAKVRTVQAAAAAAVS---GQIDFAH-----------------LSGQP-----DELVIAELV--QLPGIGRWTAEMFLL 164 (225)
T ss_dssp CHHHHHHHHHHHHHHHT---TSSCGGG-----------------CTTSC-----HHHHHHHHH--TSTTCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHh---CCcCHHH-----------------HhcCC-----HHHHHHHHH--cCCCCCHHHHHHHHH
Confidence 67899999999988764 1112221 11111 124455665 489999999998887
Q ss_pred Hh
Q 016657 328 VA 329 (385)
Q Consensus 328 Av 329 (385)
.+
T Consensus 165 ~~ 166 (225)
T 2yg9_A 165 FA 166 (225)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 10
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=95.83 E-value=0.068 Score=48.81 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=80.6
Q ss_pred HHHHHHHHHHhcCCcHHHHHHhHHHHHHH-hcCCC----HHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHH
Q 016657 191 LFELLVLSGALSELTWPAILSKRHIFREV-FVGFD----PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKV 265 (385)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~fReA-F~~FD----p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI 265 (385)
-||.|+-.+...-.+|..+.+-...|.+. |-..+ |+.|+..++++|++++..-|. .+.|.+.++.=|+++.
T Consensus 30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~--~~~KA~~L~~~a~~i~-- 105 (218)
T 1pu6_A 30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGF--YNQKAKRLIDLSGNIL-- 105 (218)
T ss_dssp SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSC--HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCC--cHHHHHHHHHHHHHHH--
Confidence 58999999999999999999888888777 55422 999999999999988776664 5677888888887764
Q ss_pred HHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHHHhc
Q 016657 266 IDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAG 330 (385)
Q Consensus 266 ~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQAvG 330 (385)
+++|+|..+- . | ..-++|. .++-|||-|+..+|.-+.
T Consensus 106 -~~~~~l~~~~--~----~-------------------~~~~~L~--~lpGIG~kTA~~il~~a~ 142 (218)
T 1pu6_A 106 -KDFQSFENFK--Q----E-------------------VTREWLL--DQKGIGKESADAILCYAC 142 (218)
T ss_dssp -HHHSSHHHHH--H----H-------------------CCHHHHH--TSTTCCHHHHHHHHHHTT
T ss_pred -HhcCChhhcc--c----h-------------------HHHHHHH--cCCCcCHHHHHHHHHHHC
Confidence 4567776421 1 0 1122444 489999999999887554
No 11
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=95.60 E-value=0.03 Score=50.73 Aligned_cols=111 Identities=12% Similarity=0.131 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHH
Q 016657 187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVI 266 (385)
Q Consensus 187 DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~ 266 (385)
..+-.||.|+-.+.-.-.+|..+.+-.+.| ++.++..++++|++++...++=-.+.|.+.+.+-|+++.+..
T Consensus 29 ~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~~ 100 (207)
T 3fhg_A 29 NEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGRL 100 (207)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTTH
T ss_pred CcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHh
Confidence 567799999999999999999999887777 588999999999988765554347889999998888764311
Q ss_pred HhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHHHhcc
Q 016657 267 DEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGV 331 (385)
Q Consensus 267 ~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQAvGi 331 (385)
.|++..|- +-. | +..-++|. .++-|||-|+-.||..+|.
T Consensus 101 --~~~l~~~~-~~~-------------------~--~~~~~~L~--~lpGIG~kTA~~il~~~~~ 139 (207)
T 3fhg_A 101 --KEEIKPLA-DED-------------------Q--QLARERLL--NIKGIGMQEASHFLRNVGY 139 (207)
T ss_dssp --HHHHHHHH-HHC-------------------H--HHHHHHHT--TSTTCCHHHHHHHHHHTTC
T ss_pred --hhhHHHHh-CCC-------------------H--HHHHHHHH--cCCCcCHHHHHHHHHHhCC
Confidence 12333331 110 1 13445565 6999999999999987675
No 12
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=95.56 E-value=0.074 Score=48.53 Aligned_cols=100 Identities=11% Similarity=0.181 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhcC
Q 016657 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFG 270 (385)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~G 270 (385)
.||.|+-+++..-.+|..+.+-...|.+.| .+|+.|+..++++|++++..-|.- + |.+.+++=|+.+.+ ++|
T Consensus 30 pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~--~-kA~~l~~~a~~i~~---~~~ 101 (225)
T 1kg2_A 30 PYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY--A-RARNLHKAAQQVAT---LHG 101 (225)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT--H-HHHHHHHHHHHHHH---HST
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH--H-HHHHHHHHHHHHHH---HhC
Confidence 699999999999999999998777776665 379999999999999987777764 2 78888888887753 322
Q ss_pred CHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHHHh
Q 016657 271 SFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVA 329 (385)
Q Consensus 271 SF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQAv 329 (385)
+ ++|. .-++|. .++.|||.|+..+|.-+
T Consensus 102 g----------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~a 129 (225)
T 1kg2_A 102 G----------------------KFPE-------TFEEVA--ALPGVGRSTAGAILSLS 129 (225)
T ss_dssp T----------------------SCCC-------SHHHHH--TSTTCCHHHHHHHHHHH
T ss_pred C----------------------CchH-------HHHHHh--cCCCCcHHHHHHHHHHh
Confidence 1 1221 123444 48899999998888754
No 13
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=95.36 E-value=0.11 Score=47.97 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=91.1
Q ss_pred CChhhhhhhhcCCCcccc--chH-HHHHHHHHHHHhcCCcHHHHHHhHHHHHHHh---cCC-CHHHHhcCCHHHHHHhcc
Q 016657 169 TDPCYAAFHDEEWGVPVH--DDK-KLFELLVLSGALSELTWPAILSKRHIFREVF---VGF-DPIAVSKLNEKKLLAAGS 241 (385)
Q Consensus 169 sdply~~YHD~EWG~Pv~--DDr-~LFE~L~LEgfQAGLSW~tILkKRe~fReAF---~~F-Dp~kVA~~~E~dIe~Lm~ 241 (385)
.||.+..-.+..-|..+. ..+ -.||.|+-.+...-.||..+.+-...| +.| ..| +|+.|+..++++|..+
T Consensus 25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~Lr~~-- 101 (228)
T 3s6i_A 25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIMRAC-- 101 (228)
T ss_dssp SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHHHHH--
T ss_pred hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHHHHc--
Confidence 588776666554454432 122 479999999999999999999999999 888 345 9999999999998443
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHhcCCHH--HHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccch
Q 016657 242 AASSLLSELKLRAIIENARQISKVIDEFGSFN--NYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGP 319 (385)
Q Consensus 242 d~~IIRNr~KI~AVI~NArailkI~~E~GSF~--~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGP 319 (385)
=-.++|.+.|+.=|+++.+ |.+. +.+-. + + -+.+-+.|. .++-|||
T Consensus 102 ----G~~~rKa~~i~~~A~~~~~-----g~~p~~~~l~~----------------~----~-~~e~~~~L~--~l~GIG~ 149 (228)
T 3s6i_A 102 ----GFSARKIDSLKSIAEATIS-----GLIPTKEEAER----------------L----S-NEELIERLT--QIKGIGR 149 (228)
T ss_dssp ----TCCHHHHHHHHHHHHHHHH-----TSSCCHHHHTT----------------S----C-HHHHHHHHT--TSTTCCH
T ss_pred ----CCCHHHHHHHHHHHHHHHc-----CCCCChHHHhc----------------C----C-HHHHHHHHH--hCCCcCH
Confidence 2478899999999998762 4331 22211 1 1 134556665 4999999
Q ss_pred hhHHHHHH-Hhcc
Q 016657 320 TIIYSFMQ-VAGV 331 (385)
Q Consensus 320 TtvYSFMQ-AvGi 331 (385)
-|+..+|. +.|-
T Consensus 150 ~TA~~ill~~lg~ 162 (228)
T 3s6i_A 150 WTVEMLLIFSLNR 162 (228)
T ss_dssp HHHHHHHHHTSCC
T ss_pred HHHHHHHHHhCCC
Confidence 99988875 5563
No 14
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=94.98 E-value=0.13 Score=47.70 Aligned_cols=130 Identities=16% Similarity=0.137 Sum_probs=89.1
Q ss_pred CChhhhhhhhcCCCcc--ccchHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcC---C-CHHHHhcCCHHHHHHhccc
Q 016657 169 TDPCYAAFHDEEWGVP--VHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG---F-DPIAVSKLNEKKLLAAGSA 242 (385)
Q Consensus 169 sdply~~YHD~EWG~P--v~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~---F-Dp~kVA~~~E~dIe~Lm~d 242 (385)
.||.+..-.+.--|.. ....+-.||.|+-.+.-.-.||..+.+-...|.+.|.. | +|+.|+..++++|..+
T Consensus 36 ~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~~--- 112 (232)
T 4b21_A 36 IDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHEC--- 112 (232)
T ss_dssp TCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHHTT---
T ss_pred hCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHHHc---
Confidence 4776655554444422 12222379999999999999999999999999999975 5 9999999999988542
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhH
Q 016657 243 ASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTII 322 (385)
Q Consensus 243 ~~IIRNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtv 322 (385)
=-.++|.+.|+.=|+++.+ .+.++|+. +... + -+.+-++|.+ ++-|||-|+
T Consensus 113 ---Gl~~~Ka~~l~~~A~~~~~--g~~p~l~~-l~~~----~-----------------~~~~~~~L~~--l~GIG~~TA 163 (232)
T 4b21_A 113 ---GFSKLKSQEIHIVAEAALN--KQIPSKSE-IEKM----S-----------------EEELMESLSK--IKGVKRWTI 163 (232)
T ss_dssp ---TCCHHHHHHHHHHHHHHHT--TCSCCHHH-HHHS----C-----------------HHHHHHHHTT--STTCCHHHH
T ss_pred ---CCcHHHHHHHHHHHHHHHh--CCCCCHHH-HHcC----C-----------------HHHHHHHHHh--CCCcCHHHH
Confidence 2367899999988888753 11113332 2211 0 1234455544 899999999
Q ss_pred HHHHHH-hc
Q 016657 323 YSFMQV-AG 330 (385)
Q Consensus 323 YSFMQA-vG 330 (385)
-.+|.. .|
T Consensus 164 ~~ill~alg 172 (232)
T 4b21_A 164 EMYSIFTLG 172 (232)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHHhCC
Confidence 877664 45
No 15
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=94.51 E-value=0.16 Score=49.27 Aligned_cols=102 Identities=17% Similarity=0.319 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHh
Q 016657 189 KKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDE 268 (385)
Q Consensus 189 r~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E 268 (385)
+--||.|+-+++..-.+|.+|..-...|.+.| .+|+.|+..++++|+++...-|.- + |.+.++.=|+.+++ +
T Consensus 37 ~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~--~-ra~~l~~~a~~~~~---~ 108 (369)
T 3fsp_A 37 RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYY--S-RVRNLHAAVKEVKT---R 108 (369)
T ss_dssp CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCT--H-HHHHHHHHHHHHHH---H
T ss_pred CChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChH--H-HHHHHHHHHHHHHH---H
Confidence 34689999999999999999999888888877 589999999999999988766664 4 78888888887754 3
Q ss_pred cCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHHHh
Q 016657 269 FGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVA 329 (385)
Q Consensus 269 ~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQAv 329 (385)
||+ ++|. .-++|.+ ++.|||-|+-.+|.-+
T Consensus 109 ~~g----------------------~~p~-------~~~~L~~--l~GIG~~tA~~il~~~ 138 (369)
T 3fsp_A 109 YGG----------------------KVPD-------DPDEFSR--LKGVGPYTVGAVLSLA 138 (369)
T ss_dssp HTT----------------------CCCC-------SHHHHHT--STTCCHHHHHHHHHHH
T ss_pred cCC----------------------CChh-------HHHHHhc--CCCcCHHHHHHHHHHH
Confidence 331 1111 1234443 8899999998887765
No 16
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=92.92 E-value=1 Score=42.72 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=90.0
Q ss_pred CChhhhhhhhcCCCccccchHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHHH
Q 016657 169 TDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-----------F-DPIAVSKLNEKKL 236 (385)
Q Consensus 169 sdply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~-----------F-Dp~kVA~~~E~dI 236 (385)
.||.+..-.+.-.|..+.. +-.||.|+-.+.-.-.||..+.+-...+.+.|-. | +|+.|+..++++|
T Consensus 94 ~Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L 172 (290)
T 3i0w_A 94 RDPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDF 172 (290)
T ss_dssp TSHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHH
T ss_pred hCHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHH
Confidence 4676655555556666654 5589999999999999999999999999998753 5 9999999999999
Q ss_pred HHhccccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcc
Q 016657 237 LAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRS 316 (385)
Q Consensus 237 e~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkF 316 (385)
.++. + . .|.+.|+.=|+++.+ .+.+++... .. + -+..-+.|. .++-
T Consensus 173 ~~~g----~--g-~Ra~~I~~~A~~i~~---g~~~l~~l~-~~----~-----------------~~~~~~~L~--~lpG 218 (290)
T 3i0w_A 173 EECT----A--G-FRAKYLKDTVDRIYN---GELNLEYIK-SL----N-----------------DNECHEELK--KFMG 218 (290)
T ss_dssp HHTT----C--G-GGHHHHHHHHHHHHT---TSSCHHHHH-HS----C-----------------HHHHHHHHT--TSTT
T ss_pred HHcC----C--c-hHHHHHHHHHHHHHh---CCCCHHHHh-cC----C-----------------HHHHHHHHH--hCCC
Confidence 8842 2 1 278888888887643 333444321 10 0 123444554 5899
Q ss_pred cchhhHHHHHH-Hhcc
Q 016657 317 VGPTIIYSFMQ-VAGV 331 (385)
Q Consensus 317 VGPTtvYSFMQ-AvGi 331 (385)
|||-|+-.+|. +.|.
T Consensus 219 IG~~TA~~ill~~lg~ 234 (290)
T 3i0w_A 219 VGPQVADCIMLFSMQK 234 (290)
T ss_dssp CCHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHhCCC
Confidence 99999877664 4564
No 17
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=92.55 E-value=0.42 Score=45.31 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=88.6
Q ss_pred CCCCCCCChhhhhhhhcCCCccccc--hHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcC-----------C-CHHHH
Q 016657 163 AWVTPNTDPCYAAFHDEEWGVPVHD--DKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-----------F-DPIAV 228 (385)
Q Consensus 163 ~Wat~~sdply~~YHD~EWG~Pv~D--Dr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~-----------F-Dp~kV 228 (385)
.|.. .||.+..-.+..-|.++.- ..-.||.|+-.+...-.||..+.+-...|.+.|-. | +|+.|
T Consensus 90 ~~~~--~D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~l 167 (295)
T 2jhn_A 90 RFMD--GDEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAI 167 (295)
T ss_dssp HHHH--TSHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHH
T ss_pred Hhhc--cCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHH
Confidence 4543 5676655555555555443 44589999999999999999999999999999754 5 79999
Q ss_pred hcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHH
Q 016657 229 SKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKD 308 (385)
Q Consensus 229 A~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKd 308 (385)
+..++++|..+. -.++|.+.|+.=|++ |+|.... ++| . +.+-+.
T Consensus 168 a~~~~~~Lr~~G------~~~rKa~~i~~~A~~--------g~l~~l~-----------------~~~----~-~e~~~~ 211 (295)
T 2jhn_A 168 LKAGVEGLRECG------LSRRKAELIVEIAKE--------ENLEELK-----------------EWG----E-EEAYEY 211 (295)
T ss_dssp HHHHHHHHHHTT------CCHHHHHHHHHHHTC--------SSGGGGG-----------------GSC----H-HHHHHH
T ss_pred HcCCHHHHHHcC------CCHHHHHHHHHHHHC--------CCHhhhh-----------------cCC----H-HHHHHH
Confidence 999988884432 367787777776665 4443210 111 1 244456
Q ss_pred HHHcCCcccchhhHHHHHHH-hc
Q 016657 309 LVRRGFRSVGPTIIYSFMQV-AG 330 (385)
Q Consensus 309 LKkrGFkFVGPTtvYSFMQA-vG 330 (385)
|. .++-|||-|+-.+|.. .|
T Consensus 212 L~--~lpGIG~~TA~~ill~~lg 232 (295)
T 2jhn_A 212 LT--SFKGIGRWTAELVLSIALG 232 (295)
T ss_dssp HH--TSTTCCHHHHHHHHHHTTC
T ss_pred Hh--cCCCcCHHHHHHHHHHccC
Confidence 65 4899999999877664 56
No 18
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=91.74 E-value=0.57 Score=43.13 Aligned_cols=108 Identities=16% Similarity=0.171 Sum_probs=72.2
Q ss_pred chHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHH
Q 016657 187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVI 266 (385)
Q Consensus 187 DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~ 266 (385)
+.+-.||.|+..+.-+--+|..+.+--+.+. +.++..++++|++++...|.=-.+.|-+-+++-|+
T Consensus 40 ~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~--------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~------ 105 (214)
T 3fhf_A 40 SNEEWFKELCFCILTANFTAEGGIRIQKEIG--------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARR------ 105 (214)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT--------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG------
T ss_pred CCCChHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH------
Confidence 5677999999999999999999987766663 67899999999998776663124456444554444
Q ss_pred HhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHHHhcc
Q 016657 267 DEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQVAGV 331 (385)
Q Consensus 267 ~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQAvGi 331 (385)
+|.+-+.+-++ .++ ...-++|.+ .++-|||-|+..+|..+|.
T Consensus 106 --~~~l~~~~~~~---~~~-----------------~~~re~Ll~-~LpGVG~KTA~~vL~~~g~ 147 (214)
T 3fhf_A 106 --FKNIKDIVESF---ENE-----------------KVAREFLVR-NIKGIGYKEASHFLRNVGY 147 (214)
T ss_dssp --GCCHHHHHHHS---SSH-----------------HHHHHHHHH-HSTTCCHHHHHHHHHHTTC
T ss_pred --hhHHHHHhccc---CCc-----------------HHHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence 23222222221 011 123334442 3889999999999987774
No 19
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=90.22 E-value=1 Score=39.79 Aligned_cols=56 Identities=9% Similarity=-0.002 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccch
Q 016657 192 FELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSE 249 (385)
Q Consensus 192 FE~L~LEgfQAGLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr 249 (385)
|+.|+-+++.+=-+|.+|..--+.|.+.|- +|+.+|+.++++|+++..--|.-+++
T Consensus 32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~~K 87 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYDLR 87 (161)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHHHH
Confidence 899999999999999999987777776664 89999999999999998887776554
No 20
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=82.65 E-value=2 Score=35.03 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=39.1
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHH
Q 016657 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (385)
Q Consensus 214 e~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArai 262 (385)
.-|.+.|.+.+.+.+..|+|+|++++.-. ..-+|+||-..|+.=|..
T Consensus 31 hKY~~~F~~~~~~~l~~LtdedL~~~GVt--a~GaRrKil~aI~~lr~~ 77 (88)
T 2d3d_A 31 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY 77 (88)
T ss_dssp GGGHHHHTTSCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhcCCHHHHHHcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHH
Confidence 56888999999999999999999998754 356999999888865554
No 21
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=79.88 E-value=3.8 Score=35.14 Aligned_cols=54 Identities=20% Similarity=0.240 Sum_probs=42.7
Q ss_pred HHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHH
Q 016657 206 WPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (385)
Q Consensus 206 W~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArai 262 (385)
|..-|+ -.-|.+.|.+-+.+.+..++|+||+.+... .+-+|+||...|.--+..
T Consensus 55 WL~sLr-L~KY~~~F~~~~~d~l~~LTeeDL~~lGVt--a~GaRrKlL~AI~~Lr~~ 108 (119)
T 2b6g_A 55 WLKSLR-LHKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY 108 (119)
T ss_dssp HHHHHT-CHHHHHHHTTSCHHHHTTCCHHHHHHHSCC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC-ChhHHHHHccCCHHHHHhcCHHHHHHCCCC--ccccHHHHHHHHHHHHhh
Confidence 554332 478999999999999999999999998653 357999999888765554
No 22
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=79.83 E-value=8.1 Score=36.09 Aligned_cols=122 Identities=17% Similarity=0.147 Sum_probs=85.0
Q ss_pred CCccccchHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhc----------CC-CHHHHhcCCHHHHHHhccccccccch
Q 016657 181 WGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFV----------GF-DPIAVSKLNEKKLLAAGSAASSLLSE 249 (385)
Q Consensus 181 WG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~----------~F-Dp~kVA~~~E~dIe~Lm~d~~IIRNr 249 (385)
.|..+....-.||.|+-.+...-.||..+.+-...|.+.|- .| +|+.|+..++++|..+. -.+
T Consensus 103 ~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~Lr~~G------~~~ 176 (282)
T 1mpg_A 103 PGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKALG------MPL 176 (282)
T ss_dssp TTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHHTT------SCH
T ss_pred CCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHHHHcC------CCH
Confidence 34444344458999999999999999999999999998874 35 79999999999984432 357
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCcccchhhHHHHHH-H
Q 016657 250 LKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFRSVGPTIIYSFMQ-V 328 (385)
Q Consensus 250 ~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFkFVGPTtvYSFMQ-A 328 (385)
.|.+.|+.=|+++.+ |.+ +. +.+. + .+.+-+.|. .++-|||-|+-.+|. +
T Consensus 177 ~ra~~i~~~A~~~~~-----~~~--------~~-----------~~~~--~-~~~~~~~L~--~lpGIG~~TA~~ill~~ 227 (282)
T 1mpg_A 177 KRAEALIHLANAALE-----GTL--------PM-----------TIPG--D-VEQAMKTLQ--TFPGIGRWTANYFALRG 227 (282)
T ss_dssp HHHHHHHHHHHHHHH-----TCS--------CS-----------SCCS--C-HHHHHHHHT--TSTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc-----CCC--------Cc-----------cccC--C-HHHHHHHHh--cCCCcCHHHHHHHHHHh
Confidence 888899888888754 111 10 0110 1 123444554 489999999987765 4
Q ss_pred hc----c-ccCccc
Q 016657 329 AG----V-TNDHLT 337 (385)
Q Consensus 329 vG----i-vNDHlv 337 (385)
.| + +.||.+
T Consensus 228 lg~~d~~pvdd~~~ 241 (282)
T 1mpg_A 228 WQAKDVFLPDDYLI 241 (282)
T ss_dssp SCCSSCCCTTCHHH
T ss_pred CCCCCcCccccHHH
Confidence 56 2 457765
No 23
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=77.86 E-value=3.3 Score=32.17 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=35.3
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHH
Q 016657 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (385)
Q Consensus 214 e~fReAF--~~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAra 261 (385)
+.|.+.| .+|| .+.|..++++|+.++... .+-||+||...|..-+.
T Consensus 20 ~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~--~~GhrkkIl~ai~~l~~ 68 (81)
T 1ucv_A 20 GRYRDHFAAGGYSSLGMVLRMNAQDVRALGIT--LMGHQKKILGSIQTMRA 68 (81)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHcCHHHHHhCCCC--ChhHHHHHHHHHHHHHH
Confidence 4567777 4688 899999999999987553 24599999887776553
No 24
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=77.50 E-value=2.6 Score=32.70 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=33.6
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHHH
Q 016657 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (385)
Q Consensus 214 e~fReAF--~~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~N 258 (385)
+.|...| .+|| .+.|+.++++|+.+|... ..-||+||.+.|..
T Consensus 25 ~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~--~~ghrkkil~ai~~ 70 (78)
T 1v38_A 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIA--DPEDRARLLSAAES 70 (78)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCC--CHHHHHHHHHHHHH
Confidence 5677777 7894 899999999999998653 24699999876654
No 25
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=74.46 E-value=3.9 Score=34.25 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=37.2
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHH
Q 016657 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (385)
Q Consensus 214 e~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAra 261 (385)
.-|.+.|.+-+.+.+..+||+|++.+.-. .+-+|+||...|+.-|.
T Consensus 44 hKY~~~F~~~~~~~l~~LTdedL~~~GVt--a~GARrKiL~aI~~Lr~ 89 (101)
T 2es6_A 44 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVID 89 (101)
T ss_dssp CCTHHHHTTSCHHHHTTCCHHHHHHHTCC--SHHHHHHHHHHHHHHHH
T ss_pred cchHHHHccCCHHHHHhcCHHHHHHcCCc--cHhHHHHHHHHHHHHHH
Confidence 45778888889999999999999998654 35689999988885544
No 26
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=71.85 E-value=7 Score=30.12 Aligned_cols=44 Identities=18% Similarity=0.169 Sum_probs=34.8
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHH
Q 016657 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (385)
Q Consensus 214 e~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArai 262 (385)
+.|.+ .++|.+.+..++++|+.++... +=+|+||-..|..=+..
T Consensus 19 ~~F~~--~~id~e~l~~lt~~DL~~lGI~---~G~RkkIl~ai~~~~~~ 62 (74)
T 3k1r_B 19 ALLRQ--EKIDLEALMLCSDLDLRSISVP---LGPREKILGAVRRRRQA 62 (74)
T ss_dssp HHHHH--TTCCHHHHTTCCHHHHHHTTCC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHH--cCcCHHHHhHCCHHHHHHcCCC---cchHHHHHHHHHHHHHH
Confidence 56665 4689999999999999998775 45999998887654443
No 27
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=71.74 E-value=5.4 Score=31.81 Aligned_cols=46 Identities=17% Similarity=0.373 Sum_probs=34.8
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHH
Q 016657 214 HIFREVFV--GF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (385)
Q Consensus 214 e~fReAF~--~F-Dp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAra 261 (385)
+.|...|. +| |.+.|..++++|+.++... .+-||+||-..|..-+.
T Consensus 39 ~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~--~~GhrkkIl~ai~~L~~ 87 (94)
T 1b0x_A 39 DRYKDNFTAAGYTTLEAVVHMSQDDLARIGIT--AITHQNKILSSVQAMRT 87 (94)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCC--ChhHHHHHHHHHHHHHH
Confidence 45666663 56 7899999999999988653 24699999887776553
No 28
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=71.34 E-value=5.8 Score=30.59 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=34.4
Q ss_pred HHHHHh--cCC-CHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHH
Q 016657 215 IFREVF--VGF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (385)
Q Consensus 215 ~fReAF--~~F-Dp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArai 262 (385)
.|.+.| .+| |.+.+..++++|+..+... .+-||+||...|..-+.-
T Consensus 25 ~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~--~~GhrkkIl~ai~~l~~~ 73 (82)
T 1b4f_A 25 QYKESFANAGFTSFDVVSQMMMEDILRVGVT--LAGHQKKILNSIQVMRAQ 73 (82)
T ss_dssp GGHHHHHHTTCCSHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHhCCHHHHHHcCCC--CHHHHHHHHHHHHHHHHH
Confidence 455555 367 7899999999999987543 245999998888776543
No 29
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=69.93 E-value=5.8 Score=31.90 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=33.1
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHHHHH
Q 016657 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (385)
Q Consensus 214 e~fReAF--~~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAr 260 (385)
+.|.+.| .+|| .+.+..|+++|+.+|... .+-||+||...|..-+
T Consensus 35 ~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~--~~GhRkkIl~ai~~l~ 82 (99)
T 2eao_A 35 VQYRDSFLTAGFTSLQLVTQMTSEDLLRIGIT--LAGHQKKILNSIHSMR 82 (99)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCC--ChhHHHHHHHHHHHHH
Confidence 3455555 3688 899999999999997553 2459999987766543
No 30
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=68.98 E-value=2.6 Score=34.32 Aligned_cols=43 Identities=21% Similarity=0.201 Sum_probs=33.1
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHHH
Q 016657 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (385)
Q Consensus 214 e~fReAF--~~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~N 258 (385)
+.|.+.| .+|| .+.|..++++|+.++... ..-||+||...|..
T Consensus 36 ~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt--~~gHrkkIl~ai~~ 81 (97)
T 2dl0_A 36 PMYAGTLSTAGFSTLSQVPSLSHTCLQEAGIT--EERHIRKLLSAARL 81 (97)
T ss_dssp GGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCC--CHHHHHHHHHHHHH
Confidence 4567777 4688 689999999999998654 25799999876654
No 31
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=68.58 E-value=6.5 Score=30.77 Aligned_cols=45 Identities=11% Similarity=0.192 Sum_probs=34.5
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHHHHH
Q 016657 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (385)
Q Consensus 214 e~fReAF--~~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAr 260 (385)
+.|.+.| .+|| .+.+..++++|+.++... .+-+|+||...|..-+
T Consensus 29 ~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~--~~GhRkkIl~ai~~Lr 76 (82)
T 2kso_A 29 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVR--LPGHQKRIAYSLLGLK 76 (82)
T ss_dssp TTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCC--CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--ChhHHHHHHHHHHHHH
Confidence 4566666 4688 899999999999988653 2469999987777644
No 32
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=66.86 E-value=4.5 Score=32.22 Aligned_cols=45 Identities=13% Similarity=0.139 Sum_probs=32.5
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHHHHH
Q 016657 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (385)
Q Consensus 214 e~fReAF~--~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAr 260 (385)
+.|.+.|. +|| .+.|..++++|+.++... .+-||+||...|..-+
T Consensus 28 ~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~--~~GHrkkIl~ai~~L~ 75 (91)
T 1x40_A 28 EQYLLHFHESGFTTVKDCAAINDSLLQKIGIS--PTGHRRRILKQLQIIL 75 (91)
T ss_dssp GGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCC--CHhHHHHHHHHHHHHH
Confidence 34555553 574 789999999999987553 2569999987776543
No 33
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=66.60 E-value=8.2 Score=30.89 Aligned_cols=45 Identities=16% Similarity=0.381 Sum_probs=33.2
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHHHHH
Q 016657 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (385)
Q Consensus 214 e~fReAF--~~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAr 260 (385)
+.|.+.| .+|| .+.|+.++++|+.++... .+-+|+||-..|..-|
T Consensus 38 ~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt--~~GHRkkIL~ai~~Lr 85 (90)
T 3h8m_A 38 ERYKDNFTAAGYNSLESVARMTIEDVMSLGIT--LVGHQKKIMSSIQTMR 85 (90)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCC--CHHHHHHHHHHHHHHH
Confidence 3455555 5688 899999999999987543 2459999988776533
No 34
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=65.05 E-value=7.5 Score=30.99 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=32.3
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHH
Q 016657 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (385)
Q Consensus 214 e~fReAF~--~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~ 257 (385)
+.|.+.|. +|| .+.|..++++|+.++... .+-||+||-..|.
T Consensus 39 ~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt--~~GHRkkIL~aI~ 83 (86)
T 2k4p_A 39 ERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQ--DPAHKRLLLDTLQ 83 (86)
T ss_dssp GGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--CHHHHHHHHHHHH
Confidence 56777774 574 799999999999988653 2569999977665
No 35
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=63.65 E-value=17 Score=35.63 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=82.9
Q ss_pred ChhhhhhhhcCCCccccchHHHHHHHHHHHHhcCCcHHHHHHhHHHHHHHhcC------------C-CHHHHhcCCHH-H
Q 016657 170 DPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG------------F-DPIAVSKLNEK-K 235 (385)
Q Consensus 170 dply~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fReAF~~------------F-Dp~kVA~~~E~-d 235 (385)
||.+..-.+.--|..+.. .-.||.|+-.+...-.+|..+.+-...|.+.|-. | +|+.|+..+.+ .
T Consensus 132 Dp~l~~l~~~~~glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee~ 210 (360)
T 2xhi_A 132 DSHFQEVAQKFQGVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAH 210 (360)
T ss_dssp CHHHHHHHHHSTTCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHHH
T ss_pred CHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHHH
Confidence 444433344445555543 4589999999999999999999999999998743 3 79999999754 3
Q ss_pred HHHhccccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhcCCCCccCCCCCCCCCCCCChhHHHHHHHHHHcCCc
Q 016657 236 LLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFVSHKPIVSRFRYPRQVPVKTPKADVISKDLVRRGFR 315 (385)
Q Consensus 236 Ie~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv~~kpiv~~~~~~~~vP~~T~lS~~ISKdLKkrGFk 315 (385)
|.. -++ . .|.+.|+.=|+++. +++|+=. .+-... .+| -+..-+.|. .++
T Consensus 211 Lr~----~Gl-~--~RA~~I~~~A~~i~---~~~~G~~-~L~~l~-------------~~~-----~~~~~~~L~--~Lp 259 (360)
T 2xhi_A 211 LRK----LGL-G--YRARYVSASARAIL---EEQGGLA-WLQQLR-------------ESS-----YEEAHKALC--ILP 259 (360)
T ss_dssp HHH----TTC-T--THHHHHHHHHHHHH---HTTCTHH-HHHGGG-------------TSC-----HHHHHHHHT--TST
T ss_pred HHH----cCC-c--HHHHHHHHHHHHHH---hccCCcc-CHHHHh-------------cCC-----HHHHHHHHH--hCC
Confidence 433 344 2 47888888888764 3443210 111111 011 123445554 589
Q ss_pred ccchhhHHHHHHH-hc
Q 016657 316 SVGPTIIYSFMQV-AG 330 (385)
Q Consensus 316 FVGPTtvYSFMQA-vG 330 (385)
-|||-|+-.+|.. .|
T Consensus 260 GIGp~TA~~ill~alg 275 (360)
T 2xhi_A 260 GVGTCVADKICLMALD 275 (360)
T ss_dssp TCCHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHhCC
Confidence 9999999888765 45
No 36
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=62.54 E-value=9 Score=30.41 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=32.4
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHHH
Q 016657 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (385)
Q Consensus 214 e~fReAF--~~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~N 258 (385)
+.|.+.| .+|| .+.|..++++|+.+|... .+-+|+||-..|..
T Consensus 34 ~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt--~~GHRkkIL~ai~~ 79 (86)
T 3kka_C 34 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVR--LPGHQKRIAYSLLG 79 (86)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--CHHHHHHHHHHHHH
Confidence 4455556 4688 899999999999988553 24599999877754
No 37
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.19 E-value=5 Score=31.55 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=34.6
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHH
Q 016657 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (385)
Q Consensus 214 e~fReAF--~~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAra 261 (385)
+.|...| .+|| .+.+..|+++|+.+|... .+-||+||...|..-+.
T Consensus 25 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~--~~GhRkkIl~ai~~l~~ 73 (88)
T 2e8n_A 25 QQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVR--LPGHQKRIAYSLLGLKD 73 (88)
T ss_dssp GGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCC--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--ChhHHHHHHHHHHHHHH
Confidence 4455555 3688 899999999999987653 24599999887776553
No 38
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=60.48 E-value=6.2 Score=31.09 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=30.8
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHH
Q 016657 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (385)
Q Consensus 214 e~fReAF--~~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~ 257 (385)
+.|.+.| .+|| .+.|+.++++|+.+|... .+-+|+||-..|.
T Consensus 36 ~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt--~~GHRkkIL~aiq 80 (82)
T 3hil_A 36 KRYILHFHSAGLDTMECVLELTAEDLTQMGIT--LPGHQKRILCSIQ 80 (82)
T ss_dssp GGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhcCCHHHHHHCCCC--CHHHHHHHHHHHH
Confidence 3455555 4788 889999999999888543 2458999877664
No 39
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=57.00 E-value=11 Score=30.73 Aligned_cols=43 Identities=14% Similarity=0.262 Sum_probs=32.2
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHHH
Q 016657 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (385)
Q Consensus 214 e~fReAF--~~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~N 258 (385)
+.|.+.| .+|| .+.+..++++|+.+|... .+-+|+||...|..
T Consensus 39 ~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt--~~GhRkkIL~aI~~ 84 (100)
T 2kg5_A 39 EQYADTFRRHGLATAGAARGLGHEELKQLGIS--ATGHRKRILRLLQT 84 (100)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChHHHHHhcCHHHHHHCCCC--ChhHHHHHHHHHHH
Confidence 3455555 4788 899999999999998654 25699998766654
No 40
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=55.02 E-value=12 Score=26.20 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCcccchhhHHHHHHHhccc
Q 016657 302 ADVISKDLVRRGFRSVGPTIIYSFMQVAGVT 332 (385)
Q Consensus 302 S~~ISKdLKkrGFkFVGPTtvYSFMQAvGiv 332 (385)
.+.|++.|+++|+ -|+..|||-.|...|++
T Consensus 22 ~~el~~~l~~~~~-~vs~~Tv~R~L~~lg~v 51 (64)
T 2p5k_A 22 QDELVDMLKQDGY-KVTQATVSRDIKELHLV 51 (64)
T ss_dssp HHHHHHHHHHTTC-CCCHHHHHHHHHHHTCE
T ss_pred HHHHHHHHHHhCC-CcCHHHHHHHHHHcCCE
Confidence 4588999999986 58999999999999977
No 41
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=54.40 E-value=16 Score=33.29 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=37.3
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHH
Q 016657 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (385)
Q Consensus 214 e~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAr 260 (385)
.-|.+.|.+.+.+.+..+||+|++.+.-.. -+|+||-..|+.-|
T Consensus 20 hKY~~~F~~~~~e~~~~LTdedL~~~GVT~---GARrKIL~aIq~Lr 63 (173)
T 1oxj_A 20 HKYIELFKNMTYEEMLLITEDFLQSVGVTK---GASHKLALCIDKLK 63 (173)
T ss_dssp GGGGGGGTTCCHHHHTTCCHHHHHHTTCCH---HHHHHHHHHHHHHH
T ss_pred chhHHHHccCCHHHHHhcCHHHHHHCCCch---HHHHHHHHHHHHHH
Confidence 558889999999999999999999987763 79999888876543
No 42
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.95 E-value=22 Score=27.20 Aligned_cols=44 Identities=7% Similarity=0.059 Sum_probs=33.1
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHH
Q 016657 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (385)
Q Consensus 214 e~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAra 261 (385)
+.|++ ++.|-+.+..++++|+.+|... -+-||.||...|..-+.
T Consensus 32 ~~F~~--~~I~G~~Ll~Lt~~dL~~LGI~--~~ghr~~il~~I~~L~~ 75 (83)
T 2ean_A 32 KNFER--EKISGDQLLRITHQELEDLGVS--RIGHQELILEAVDLLCA 75 (83)
T ss_dssp HHHHH--HTCCHHHHTTCCHHHHHHHTCC--CSHHHHHHHHHHHHHHH
T ss_pred HHHHH--CCCCHHHHhhCCHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 34444 5678899999999999987553 35699999887776554
No 43
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=48.05 E-value=28 Score=29.91 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=34.1
Q ss_pred HHHHHh--cCCC-HHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHH
Q 016657 215 IFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (385)
Q Consensus 215 ~fReAF--~~FD-p~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArai 262 (385)
.|.+.| .+|| .+.|..++++|+.++... .+-||.||-..|..-+.+
T Consensus 93 qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~--~~gHr~kIl~ai~~l~~~ 141 (149)
T 3sei_A 93 QYYKVLVDNGYENIDFITDITWEDLQEIGIT--KLGHQKKLMLAVRKLAEL 141 (149)
T ss_dssp GGHHHHHHTTCCSHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCCchHHHHhhCCHHHHHHCCCC--CHHHHHHHHHHHHHHHHH
Confidence 355555 4788 899999999999887553 246999998888655544
No 44
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=47.81 E-value=17 Score=31.29 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=31.9
Q ss_pred HHHHHHhc--CCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHH
Q 016657 214 HIFREVFV--GFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (385)
Q Consensus 214 e~fReAF~--~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~N 258 (385)
+.|.+.|. +||.+.+..++++|+.+|.... .-||+||...|..
T Consensus 23 ~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~--~gHrkkil~ai~~ 67 (149)
T 3sei_A 23 QLYAPNFISAGYDLPTISRMTPEDLTAIGVTK--PGHRKKIAAEISG 67 (149)
T ss_dssp GGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCS--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHccCCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 34556664 8999999999999999875532 3589998766543
No 45
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=45.11 E-value=34 Score=25.84 Aligned_cols=43 Identities=7% Similarity=0.059 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHH
Q 016657 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (385)
Q Consensus 214 e~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAr 260 (385)
+.|++ +++|-+.+..++++++.+|.... +-||.||...|..-+
T Consensus 28 ~~F~~--~~i~G~~Ll~L~~~dL~~lGI~~--~ghr~~il~~I~~L~ 70 (80)
T 3bs5_B 28 KNFER--EKISGDQLLRITHQELEDLGVSR--IGHQELILEAVDLLC 70 (80)
T ss_dssp HHHHH--HTCCHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHH--cCCCHHHHHHCCHHHHHHcCCCC--HHHHHHHHHHHHHHH
Confidence 44544 56888999999999998875532 568999987776544
No 46
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=44.01 E-value=14 Score=29.59 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=43.2
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhcC--CHHHHHh
Q 016657 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFG--SFNNYIW 277 (385)
Q Consensus 209 ILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~G--SF~~ylW 277 (385)
++.+.+.++++|..||...=-.++.+++..++..-+.-.....++.++..+ ...| +|.+|+-
T Consensus 65 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~-------d~dg~i~~~eF~~ 128 (165)
T 1k94_A 65 LWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY-------SKNGRIFFDDYVA 128 (165)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHHH-------CBTTBCBHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHHh-------CCCCeEcHHHHHH
Confidence 444567899999999998878899999988877655445666666665543 2223 5676663
No 47
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=41.79 E-value=19 Score=27.73 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=33.3
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHH
Q 016657 214 HIFREVFV--GF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (385)
Q Consensus 214 e~fReAF~--~F-Dp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAr 260 (385)
+.|.+.|. +| |.+.+..++++|+.++... .+-||+||...|..-+
T Consensus 28 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~--~~GhrkkIl~ai~~l~ 75 (83)
T 2qkq_A 28 GRYEESFAAAGFGSFELVSQISAEDLLRIGVT--LAGHQKKILASVQHMK 75 (83)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCC--CHHHHHHHHHHHHHHH
Confidence 45777775 44 7899999999999997553 2469999987776544
No 48
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=41.20 E-value=32 Score=26.93 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=46.3
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhc
Q 016657 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFV 280 (385)
Q Consensus 213 Re~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv 280 (385)
...++++|..||...=-.++-+++..++..-++-.....|..++... ...-+|.+|+--+.
T Consensus 15 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~-------~g~i~~~eF~~~~~ 75 (153)
T 2ovk_B 15 MQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC-------PGQLNFTAFLTLFG 75 (153)
T ss_dssp HHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS-------SSCCCSHHHHHTTT
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc-------CCCCCHHHHHHHHH
Confidence 36788999999988888899999999888766666777777777654 22347888886553
No 49
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=40.88 E-value=15 Score=30.18 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=32.0
Q ss_pred HHHHHHhc--CCC-HHHHh--cCCHHHHHHhccccccccchhHHHHHHHH
Q 016657 214 HIFREVFV--GFD-PIAVS--KLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (385)
Q Consensus 214 e~fReAF~--~FD-p~kVA--~~~E~dIe~Lm~d~~IIRNr~KI~AVI~N 258 (385)
+.|.+.|. +|| .+.|+ .++++|+.++... .+-||+||...|..
T Consensus 42 ~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt--~~GHRkkIL~aI~~ 89 (101)
T 2lmr_A 42 QQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGIS--DPQHRRKLLQAARS 89 (101)
T ss_dssp GGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCC--CHHHHHHHHHHHHH
Confidence 56777774 566 67888 8999999998654 24699999876654
No 50
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=39.83 E-value=57 Score=24.16 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHHh--cCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHH
Q 016657 214 HIFREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (385)
Q Consensus 214 e~fReAF--~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAr 260 (385)
+.|...| ++.|-+.+..++++|+..|... -+-||.||...|..-+
T Consensus 22 ~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~--~~g~r~kil~~i~~L~ 68 (74)
T 2gle_A 22 DQYVSEFSAQNISGEQLLQLDGNKLKALGMT--SSQDRALVKKKLKEMK 68 (74)
T ss_dssp HHHHHHHTTTTCCHHHHHTCCHHHHHTTTCC--CHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHcCCCHHHHhhCCHHHHHHcCCC--CHHHHHHHHHHHHHHH
Confidence 4566666 4568899999999999876543 2468999987776644
No 51
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=39.17 E-value=18 Score=30.20 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=42.9
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhcC--CHHHHHhhh
Q 016657 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFG--SFNNYIWSF 279 (385)
Q Consensus 209 ILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~G--SF~~ylWsF 279 (385)
++.+.+.++++|..||...=-.++.+++..++..-+.-.....++.++..+ ...| +|.+|+--+
T Consensus 98 ~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~~-------d~dg~i~~~eF~~~~ 163 (198)
T 1juo_A 98 LWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY-------STNGKITFDDYIACC 163 (198)
T ss_dssp HHHHHHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHHHT-------CSSSSEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh-------CCCCeEcHHHHHHHH
Confidence 344557899999999998877889999988776555444555555555432 2233 577776543
No 52
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=31.47 E-value=35 Score=25.78 Aligned_cols=45 Identities=9% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHHHh--cCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHH
Q 016657 215 IFREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (385)
Q Consensus 215 ~fReAF--~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAra 261 (385)
.|.+.| .++|-..+..++++|+.+|... -+-+|.||...|..-+.
T Consensus 21 ~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~--~~Ghr~kIl~aI~~l~~ 67 (76)
T 2f3n_A 21 EHRDRFEDHEIEGAHLPALTKEDFVELGVT--RVGHRENIERALRQLDG 67 (76)
T ss_dssp GGHHHHHHTTCCGGGGGGCCHHHHHHTTCC--CHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHcCCCHHHHccCCHHHHHHcCCC--ChhHHHHHHHHHHHHHH
Confidence 355555 4677789999999999877553 24589999877766443
No 53
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=31.06 E-value=32 Score=26.72 Aligned_cols=57 Identities=9% Similarity=0.118 Sum_probs=40.5
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhcC--CHHHHH
Q 016657 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFG--SFNNYI 276 (385)
Q Consensus 213 Re~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~G--SF~~yl 276 (385)
.+.++++|..||...=-.++.+++..++..-+.-.....+..++.-+ ...| +|.+|+
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~-------d~dg~i~~~eF~ 141 (146)
T 2qac_A 83 VEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAF-------SSEDNIDYKLFC 141 (146)
T ss_dssp HHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHHH-------CSSSEEEHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHc-------CCCCcCcHHHHH
Confidence 57799999999998777788899988877655555666666666533 3333 566665
No 54
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=30.29 E-value=34 Score=28.86 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHcCCcccchhhHHHHHHHhccc
Q 016657 301 KADVISKDLVRRGFRSVGPTIIYSFMQVAGVT 332 (385)
Q Consensus 301 lS~~ISKdLKkrGFkFVGPTtvYSFMQAvGiv 332 (385)
....+++.|...||+++.....+.||+..||-
T Consensus 38 ~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~ 69 (143)
T 2yvq_A 38 RFLGVAEQLHNEGFKLFATEATSDWLNANNVP 69 (143)
T ss_dssp HHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHCCCEEEECchHHHHHHHcCCe
Confidence 34568999999999999888889999999953
No 55
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=27.99 E-value=1e+02 Score=22.92 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=32.7
Q ss_pred HHHHh--cCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHH
Q 016657 216 FREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (385)
Q Consensus 216 fReAF--~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAra 261 (385)
|.+.| ++.|-..+..++++++.+|... .+-||.||..-|..=|.
T Consensus 25 y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~--~~g~r~~il~~I~~Lr~ 70 (78)
T 3bs7_A 25 YEQLFAQHDITGRALLRITDSSLQRMGVT--DNRDREAIWREIVKQRL 70 (78)
T ss_dssp GHHHHHHTTCCHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHhhCCHHHHhHcCCC--CHHHHHHHHHHHHHHHh
Confidence 55555 5678899999999999987553 25689998877766544
No 56
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=27.91 E-value=19 Score=28.20 Aligned_cols=44 Identities=25% Similarity=0.294 Sum_probs=34.7
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHH
Q 016657 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (385)
Q Consensus 214 e~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~ 257 (385)
+.+++||.-||.+.=-.++-+++..++..-++--....|+.++.
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45789999999999889999999988876666666666666543
No 57
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=27.52 E-value=39 Score=28.76 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=30.5
Q ss_pred HHHHHh--cCCCH-HHHh--cCCHHHHHHhccccccccchhHHHHHHHH
Q 016657 215 IFREVF--VGFDP-IAVS--KLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (385)
Q Consensus 215 ~fReAF--~~FDp-~kVA--~~~E~dIe~Lm~d~~IIRNr~KI~AVI~N 258 (385)
.|.+.| .+||- +.|+ .++++|+..+.... .-||+||...|..
T Consensus 28 ~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~--~ghRkkil~ai~~ 74 (148)
T 2kiv_A 28 QYENHLMANGFDNVQAMGSNVMEDQDLLEIGILN--SGHRQRILQAIQL 74 (148)
T ss_dssp TSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSS--TTSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 455666 56776 6676 99999999876542 3599999876654
No 58
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=27.51 E-value=31 Score=23.48 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhH
Q 016657 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELK 251 (385)
Q Consensus 213 Re~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~K 251 (385)
.+.++++|..||...=-.++.+++..++..-+.-.....
T Consensus 5 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~ 43 (71)
T 2b1u_A 5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEE 43 (71)
T ss_dssp HHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHH
Confidence 467899999999887778888999888776444333333
No 59
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, alternative splicing, ANK repeat, cell junction, cell membrane; NMR {Homo sapiens}
Probab=26.29 E-value=52 Score=26.48 Aligned_cols=46 Identities=15% Similarity=0.232 Sum_probs=31.9
Q ss_pred HHHHHHh--cCCCH-HHH--hcCCHHHHHHhccccccccchhHHHHHHHHHHH
Q 016657 214 HIFREVF--VGFDP-IAV--SKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (385)
Q Consensus 214 e~fReAF--~~FDp-~kV--A~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAra 261 (385)
+.|.+.| .+||- +.| ..|+++|+.++... .+-||+||...|..-+.
T Consensus 35 ~qY~~~F~~~gid~~~~l~~~~lt~~DL~~lGI~--~~GhRkkIl~ai~~L~~ 85 (103)
T 2ke7_A 35 PQYENHLMANGFDNVQFMGSNVMEDQDLLEIGIL--NSGHRQRILQAIQLLPK 85 (103)
T ss_dssp TTCHHHHHHTTCCCHHHHHTTCCCHHHHHHHTCC--CHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCcHHHHhcccCCHHHHhHCCCC--CHHHHHHHHHHHHHHHh
Confidence 4455555 56764 446 69999999988553 24699999877766543
No 60
>2lc0_A Putative uncharacterized protein TB39.8; FHAA, kinase substrate, protein binding; NMR {Mycobacterium tuberculosis}
Probab=24.65 E-value=24 Score=30.15 Aligned_cols=29 Identities=21% Similarity=0.354 Sum_probs=23.3
Q ss_pred ChhHHHHHHHHHHcCCcccchhhHHHHHHH
Q 016657 299 TPKADVISKDLVRRGFRSVGPTIIYSFMQV 328 (385)
Q Consensus 299 T~lS~~ISKdLKkrGFkFVGPTtvYSFMQA 328 (385)
..+++.+.+....+||.|+||+.|. |.+.
T Consensus 83 ~el~~~l~~~a~~qgy~~~G~v~V~-f~~d 111 (132)
T 2lc0_A 83 TGFARDLADYIQEQGWQTYGDVVVR-FEQS 111 (132)
T ss_dssp HHHHHHHHHHHHHHTCBCSSCCEEE-EEEE
T ss_pred HHHHHHHHHHHHHCCCeecCCeEEE-EEEC
Confidence 4677788888889999999999886 5443
No 61
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=24.54 E-value=41 Score=26.72 Aligned_cols=60 Identities=22% Similarity=0.236 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccccc-ccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhh
Q 016657 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASS-LLSELKLRAIIENARQISKVIDEFGSFNNYIWSF 279 (385)
Q Consensus 213 Re~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~I-IRNr~KI~AVI~NArailkI~~E~GSF~~ylWsF 279 (385)
...++++|..||...=-.++.+++..++..-++ --....|..++.+. ...-+|.+|+--+
T Consensus 24 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~-------dg~i~~~eF~~~~ 84 (166)
T 2mys_B 24 IEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEA-------SGPINFTVFLTMF 84 (166)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHHC-------CCCcCHHHHHHHH
Confidence 467899999999888778899999887766555 44556666666542 2223788887554
No 62
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=24.07 E-value=28 Score=27.79 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=29.5
Q ss_pred CCcHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccc
Q 016657 203 ELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAAS 244 (385)
Q Consensus 203 GLSW~tILkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~ 244 (385)
|..|..--..+..|+++|.-||. .=-.++-+++..++..-+
T Consensus 4 ~~~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~~~g 44 (106)
T 1eh2_A 4 GSPWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLLNSK 44 (106)
T ss_dssp --CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHHTTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHHHcC
Confidence 55566545667889999999998 555678888888776544
No 63
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=23.36 E-value=25 Score=27.10 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=43.6
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhcCCHHHHHhhhc
Q 016657 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFGSFNNYIWSFV 280 (385)
Q Consensus 212 KRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~GSF~~ylWsFv 280 (385)
....++++|..||...=-.++-+++..++..-++--....|..++.. ....-+|.+|+--+.
T Consensus 5 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~-------~~g~i~~~eF~~~~~ 66 (143)
T 3j04_B 5 QIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE-------APGPINFTMFLTMFG 66 (143)
T ss_dssp HHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT-------SSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh-------CCCCcCHHHHHHHHH
Confidence 35678999999999888888999998887765555566666666554 112236888876553
No 64
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=23.33 E-value=32 Score=24.49 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=32.3
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHH
Q 016657 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (385)
Q Consensus 212 KRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI 256 (385)
....++++|..||...=-.++-+++..++..-++-.+...|..++
T Consensus 12 ~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 12 EQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIV 56 (85)
T ss_dssp HHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 356789999999988766788888888776655544555555444
No 65
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=22.54 E-value=86 Score=23.86 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=32.2
Q ss_pred HHHHh--cCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHH
Q 016657 216 FREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (385)
Q Consensus 216 fReAF--~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NAra 261 (385)
|.+.| .++|-..+..++++|+.+|.... +-+|.||...|..-+.
T Consensus 27 Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~--~ghr~kIl~aI~~L~~ 72 (81)
T 3bq7_A 27 YKDIFTRHDIRGSGLLHLERRDLKDLGVTK--VGHMKRILCGIKELSR 72 (81)
T ss_dssp GHHHHHHTTCCHHHHTTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHCcCCHHHHhHcCCCC--HHHHHHHHHHHHHHHH
Confidence 44555 45788899999999999865432 4689999877766443
No 66
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=22.51 E-value=74 Score=25.79 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=29.4
Q ss_pred hcCCcHHHHHHhHH-HHHHHhcCCCHHHHhcCCHHHHHH-hcccccccc
Q 016657 201 LSELTWPAILSKRH-IFREVFVGFDPIAVSKLNEKKLLA-AGSAASSLL 247 (385)
Q Consensus 201 QAGLSW~tILkKRe-~fReAF~~FDp~kVA~~~E~dIe~-Lm~d~~IIR 247 (385)
+.|+.|..+++++. .|++.-.. ...++++++-+ ++.||.+|+
T Consensus 48 ~~~~~~~~l~n~~~~~~k~l~~~-----~~~ls~~~~~~~m~~~p~Lik 91 (120)
T 3l78_A 48 YTENGTEDIISTRSKVFQKLDID-----VDELSVSELINLISKNPSLLR 91 (120)
T ss_dssp HCSSTHHHHBCTTCHHHHHTTCC-----GGGCCHHHHHHHHHHCGGGBC
T ss_pred hcCCCHHHhhcCCcHHHHHcCCC-----cccCCHHHHHHHHHhCcccee
Confidence 57999999999984 56665432 25688887765 555777765
No 67
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=21.08 E-value=63 Score=26.23 Aligned_cols=65 Identities=14% Similarity=0.205 Sum_probs=43.9
Q ss_pred HHhHHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHhcC--CHHHHHhhh
Q 016657 210 LSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKVIDEFG--SFNNYIWSF 279 (385)
Q Consensus 210 LkKRe~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI~NArailkI~~E~G--SF~~ylWsF 279 (385)
-...+.++++|..||...=-.++-+++..++..-+.-.....|+.++..+ +. ...| +|.+|+--+
T Consensus 46 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~----D~-d~dg~I~~~eF~~~~ 112 (150)
T 2jjz_A 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEV----TG-GVSDTISYRDFVNMM 112 (150)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH----HT-TSCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHH----CC-CCCCcEeHHHHHHHH
Confidence 35678899999999998877889999988876555444555565554422 11 1122 788887544
No 68
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=21.00 E-value=12 Score=24.85 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=14.6
Q ss_pred HHHHHhHHHHHHHhcCC
Q 016657 207 PAILSKRHIFREVFVGF 223 (385)
Q Consensus 207 ~tILkKRe~fReAF~~F 223 (385)
..||.+|+.||..|.+|
T Consensus 7 r~iL~rrpSYrkIlndl 23 (28)
T 1kdx_B 7 REILSRRPSYRKILNDL 23 (28)
T ss_dssp HHHHTTSTHHHHHHHHH
T ss_pred hhhhhcCchHHHHHHhh
Confidence 46899999999999876
No 69
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=20.94 E-value=32 Score=28.22 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=31.5
Q ss_pred HHhcCCcHHHHHHhHHH-HHHHhcCCCH-HHHhcCCHHHHHHh-cccccccc
Q 016657 199 GALSELTWPAILSKRHI-FREVFVGFDP-IAVSKLNEKKLLAA-GSAASSLL 247 (385)
Q Consensus 199 gfQAGLSW~tILkKRe~-fReAF~~FDp-~kVA~~~E~dIe~L-m~d~~IIR 247 (385)
..+.|+.|..+++++.. |++ .+. +++..++++++-++ +.+|.+|+
T Consensus 50 l~~~g~~~~~l~n~~~~~~k~----l~l~~k~~~ls~~~~~~lm~~~p~Lik 97 (120)
T 3gkx_A 50 IPLSGLPVKKFFNTSGVVYKE----LKLSSKLPTMTEEEQIALLATNGKLVK 97 (120)
T ss_dssp HHHHTSCGGGGBCTTSHHHHH----TTHHHHGGGSCHHHHHHHHTTCGGGBC
T ss_pred HHHcCCCHHHeEeCCCchhhh----cCcchhcccCCHHHHHHHHHhChhheE
Confidence 35679999999999854 444 333 45678899887664 46777765
No 70
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=20.69 E-value=30 Score=26.08 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=30.3
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhccccccccchhHHHHHH
Q 016657 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (385)
Q Consensus 213 Re~fReAF~~FDp~kVA~~~E~dIe~Lm~d~~IIRNr~KI~AVI 256 (385)
.+.++++|..||...=-.++.+++..++..-+.-.....|+.++
T Consensus 28 ~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 71 (94)
T 2kz2_A 28 EEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 71 (94)
T ss_dssp HHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45678899999987766788888888776544444455554443
No 71
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=20.50 E-value=68 Score=29.47 Aligned_cols=29 Identities=17% Similarity=0.430 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCc----ccchhhHHHHHHHhcccc
Q 016657 304 VISKDLVRRGFR----SVGPTIIYSFMQVAGVTN 333 (385)
Q Consensus 304 ~ISKdLKkrGFk----FVGPTtvYSFMQAvGivN 333 (385)
.+-+.|+++|.+ ..|++++-+||++ |+|+
T Consensus 178 ~~l~~L~~~g~~~vlvEGG~~l~~sfL~a-gLVD 210 (270)
T 2p4g_A 178 IAFDALHARRLKKISIEGGPSVYRQALSL-GIVD 210 (270)
T ss_dssp HHHHHHHTTTCCEEEEEECHHHHHHHHHH-TCCC
T ss_pred HHHHHHHHCCCCEEEEecCHHHHHHHHHC-CCCe
Confidence 566799999998 5699999999876 8885
Done!