Your job contains 1 sequence.
>016658
MANPPRGRRSPPSRSASGSSSRSRSRSYSGSDSRSSSRSLSSRSRSLSRSRSLSSSSSPS
RSTNSRSRSPPPQRNKSPAVAARRGRSPAPPSKRASSPPRKASTENDSLVLYIDSLSRNV
NEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDGFHRLQSLL
QLLQREIVRELIMSVLILRRMGQNDQENPLPVGSHPPRHGGDLLDLEEVDLRDDHQILLH
VDASSLPFVVDWNLLIAEVRPLRGGDLLLHLGVALPPLHLGGIDLLQGPLPEECVVVPSD
GVLLFLQGAVRLPLDEPVLLLEGLHSVDALALQFAGLCTLVQDLFHQGEGEGHLQDVGDH
HPTLHHLVRAGYLEGYQGVVVLKGL
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 016658
(385 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2207395 - symbol:AT1G79100 "AT1G79100" species... 142 1.1e-09 1
DICTYBASE|DDB_G0289053 - symbol:DDB_G0289053 "RNA recogni... 141 4.5e-07 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 4.7e-07 1
UNIPROTKB|K7ELT6 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 4.7e-07 1
UNIPROTKB|K7ELV6 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 4.7e-07 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 4.7e-07 1
UNIPROTKB|K7ENX8 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 4.7e-07 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 119 4.7e-07 1
TAIR|locus:2172144 - symbol:AT5G54580 species:3702 "Arabi... 119 4.7e-07 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 118 6.1e-07 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 117 7.9e-07 1
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 115 1.3e-06 1
UNIPROTKB|H3BR27 - symbol:RBMX "RNA-binding motif protein... 114 1.7e-06 1
UNIPROTKB|K7GMF5 - symbol:RBMX "Uncharacterized protein" ... 114 1.7e-06 1
UNIPROTKB|K7GNR2 - symbol:RBMX "Uncharacterized protein" ... 114 1.7e-06 1
UNIPROTKB|K7GQ39 - symbol:RBMX "Uncharacterized protein" ... 114 1.7e-06 1
ZFIN|ZDB-GENE-030131-5228 - symbol:rnps1 "RNA binding pro... 130 2.8e-06 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 2.8e-06 1
TAIR|locus:2049816 - symbol:AT2G37510 species:3702 "Arabi... 112 2.9e-06 1
WB|WBGene00004388 - symbol:rnp-5 species:6239 "Caenorhabd... 130 2.9e-06 1
UNIPROTKB|E1BV45 - symbol:RNPS1 "Uncharacterized protein"... 128 3.1e-06 1
UNIPROTKB|Q9DED4 - symbol:cirbp-b "Cold-inducible RNA-bin... 118 3.7e-06 1
TAIR|locus:2039590 - symbol:AT2G27330 species:3702 "Arabi... 111 3.7e-06 1
TAIR|locus:2206850 - symbol:AT1G73530 species:3702 "Arabi... 121 4.4e-06 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 119 4.7e-06 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 4.7e-06 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 119 4.7e-06 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 4.7e-06 1
FB|FBgn0037707 - symbol:RnpS1 "RNA-binding protein S1" sp... 130 5.2e-06 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 5.6e-06 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 109 6.2e-06 1
UNIPROTKB|P60826 - symbol:CIRBP "Cold-inducible RNA-bindi... 118 7.3e-06 1
MGI|MGI:893588 - symbol:Cirbp "cold inducible RNA binding... 118 7.3e-06 1
RGD|620756 - symbol:Cirbp "cold inducible RNA binding pro... 118 7.3e-06 1
TAIR|locus:2179624 - symbol:AT5G19030 species:3702 "Arabi... 118 7.3e-06 1
UNIPROTKB|J3KP15 - symbol:SRSF2 "Serine/arginine-rich-spl... 107 1.0e-05 1
UNIPROTKB|J3QL05 - symbol:SRSF2 "Serine/arginine-rich-spl... 107 1.0e-05 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 119 1.1e-05 1
UNIPROTKB|H3BV80 - symbol:RNPS1 "RNA-binding protein with... 121 1.3e-05 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 105 1.7e-05 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 1.9e-05 1
UNIPROTKB|H9L0U4 - symbol:CIRBP "Uncharacterized protein"... 114 2.1e-05 1
UNIPROTKB|E1C131 - symbol:E1C131 "Uncharacterized protein... 104 2.3e-05 1
UNIPROTKB|F5H0I5 - symbol:NOL8 "Nucleolar protein 8" spec... 104 2.3e-05 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 119 2.4e-05 1
UNIPROTKB|H3BMS0 - symbol:RNPS1 "RNA-binding protein with... 121 2.5e-05 1
UNIPROTKB|H9L3B3 - symbol:CIRBP "Uncharacterized protein"... 114 2.9e-05 1
UNIPROTKB|H3BMM9 - symbol:RNPS1 "RNA-binding protein with... 121 3.3e-05 1
UNIPROTKB|Q8EK89 - symbol:SO_0208 "RNA-binding protein" s... 109 3.7e-05 1
TIGR_CMR|SO_0208 - symbol:SO_0208 "RNA-binding protein" s... 109 3.7e-05 1
UNIPROTKB|E9PKU1 - symbol:CELF1 "CUGBP Elav-like family m... 102 3.7e-05 1
UNIPROTKB|E9PQK4 - symbol:CELF1 "CUGBP Elav-like family m... 102 3.7e-05 1
UNIPROTKB|E9PSH0 - symbol:CELF1 "CUGBP Elav-like family m... 102 3.7e-05 1
UNIPROTKB|F5H0D8 - symbol:CELF1 "CUGBP Elav-like family m... 102 3.7e-05 1
UNIPROTKB|F5H4Y5 - symbol:CELF1 "CUGBP Elav-like family m... 102 3.7e-05 1
UNIPROTKB|H3BTC0 - symbol:RNPS1 "RNA-binding protein with... 121 3.8e-05 1
UNIPROTKB|A6QR16 - symbol:RNPS1 "RNA-binding protein with... 121 3.9e-05 1
UNIPROTKB|F6XEW2 - symbol:RNPS1 "Uncharacterized protein"... 121 3.9e-05 1
UNIPROTKB|Q15287 - symbol:RNPS1 "RNA-binding protein with... 121 3.9e-05 1
MGI|MGI:97960 - symbol:Rnps1 "ribonucleic acid binding pr... 121 3.9e-05 1
RGD|1307522 - symbol:Rnps1 "ribonucleic acid binding prot... 121 3.9e-05 1
UNIPROTKB|Q6AYK1 - symbol:Rnps1 "RNA-binding protein with... 121 3.9e-05 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 124 3.9e-05 1
UNIPROTKB|E2R2P7 - symbol:RNPS1 "Uncharacterized protein"... 121 4.3e-05 1
UNIPROTKB|Q3ZCE2 - symbol:ELAVL1 "ELAV (Embryonic lethal,... 121 4.5e-05 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 4.7e-05 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 101 4.9e-05 1
UNIPROTKB|Q74DJ2 - symbol:GSU1324 "RNA-binding protein" s... 101 4.9e-05 1
TIGR_CMR|GSU_1324 - symbol:GSU_1324 "RNA-binding protein"... 101 4.9e-05 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 111 5.6e-05 1
UNIPROTKB|H9KZV5 - symbol:CIRBP "Uncharacterized protein"... 114 6.0e-05 1
UNIPROTKB|D6W5Y5 - symbol:CIRBP "Cold-inducible RNA-bindi... 119 6.3e-05 1
FB|FBgn0024987 - symbol:ssx "sister-of-Sex-lethal" specie... 117 6.4e-05 2
UNIPROTKB|H0Y6E7 - symbol:RBMX "RNA-binding motif protein... 114 6.8e-05 2
UNIPROTKB|K7GKR9 - symbol:RBMX "Uncharacterized protein" ... 114 7.0e-05 1
UNIPROTKB|H3BT71 - symbol:RBMX "RNA-binding motif protein... 114 7.2e-05 2
UNIPROTKB|B1AM48 - symbol:ELAVL2 "ELAV-like protein 2" sp... 113 7.7e-05 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 99 8.1e-05 1
UNIPROTKB|F2Z2U1 - symbol:RBMY1A1 "RNA-binding motif prot... 99 8.1e-05 1
UNIPROTKB|F6UBL3 - symbol:CELF6 "CUGBP Elav-like family m... 99 8.1e-05 1
UNIPROTKB|K7GRX3 - symbol:RBMX "Uncharacterized protein" ... 114 8.2e-05 2
UNIPROTKB|F1M3H5 - symbol:F1M3H5 "Uncharacterized protein... 117 8.9e-05 1
UNIPROTKB|Q96E39 - symbol:RBMXL1 "RNA binding motif prote... 116 0.00011 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 119 0.00011 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 120 0.00011 1
UNIPROTKB|G3N117 - symbol:LOC508834 "Uncharacterized prot... 116 0.00012 1
UNIPROTKB|D6RF44 - symbol:HNRNPD "Heterogeneous nuclear r... 97 0.00014 1
UNIPROTKB|Q3AF33 - symbol:CHY_0389 "RNA-binding protein" ... 97 0.00014 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 97 0.00014 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 97 0.00014 1
TIGR_CMR|CHY_0389 - symbol:CHY_0389 "RNA-binding protein"... 97 0.00014 1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 116 0.00015 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 113 0.00015 1
FB|FBgn0038345 - symbol:CG5213 species:7227 "Drosophila m... 114 0.00016 1
UNIPROTKB|Q5ZKR5 - symbol:NCBP2 "Nuclear cap-binding prot... 108 0.00017 1
UNIPROTKB|B5G279 - symbol:NCBP2 "Nuclear cap-binding prot... 108 0.00017 1
UNIPROTKB|Q2KGN9 - symbol:MGCH7_ch7g296 "Putative unchara... 117 0.00017 1
UNIPROTKB|F1N9I5 - symbol:ELAVL1 "Uncharacterized protein... 116 0.00017 1
RGD|1587653 - symbol:LOC688526 "similar to ribonucleic ac... 115 0.00019 1
UNIPROTKB|F1RQ90 - symbol:RBMX "Uncharacterized protein" ... 114 0.00019 2
WARNING: Descriptions of 105 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2207395 [details] [associations]
symbol:AT1G79100 "AT1G79100" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR012677 EMBL:CP002684 GO:GO:0000166
Gene3D:3.30.70.330 IPI:IPI00533379 RefSeq:NP_178031.1
UniGene:At.52566 ProteinModelPortal:F4IDI5 SMR:F4IDI5
EnsemblPlants:AT1G79100.1 GeneID:844251 KEGG:ath:AT1G79100
Uniprot:F4IDI5
Length = 70
Score = 142 (55.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/49 (57%), Positives = 35/49 (71%)
Query: 125 LREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTR-ADAEKAQLYMDG 172
+R +FGE++ V+L +DRA NL RG YV FK + ADAEK QLYMDG
Sbjct: 4 IRVFRGDFGEIIHVQLAIDRAANLSRGDAYVEFKAKIADAEKPQLYMDG 52
>DICTYBASE|DDB_G0289053 [details] [associations]
symbol:DDB_G0289053 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289053 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000129 RefSeq:XP_636445.5
ProteinModelPortal:Q54I26 EnsemblProtists:DDB0233749 GeneID:8626938
KEGG:ddi:DDB_G0289053 OMA:NRYRISS ProtClustDB:CLSZ2846809
Uniprot:Q54I26
Length = 512
Score = 141 (54.7 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 113 IDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG 172
+D L+ NVN+ HL+EIF NFG + D++ + D+ ++ P G + F + + +KA+ YMDG
Sbjct: 252 VDRLTPNVNKDHLQEIFENFGSIKDIDFLWDKEIDQPMGYALLYFHQKDERDKAKRYMDG 311
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 119 (46.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 119 (46.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 119 (46.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 119 (46.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 119 (46.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 119 (46.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I LS +V+E L++ FS+FGEV +V + D+ RG G+V F DA A+ M
Sbjct: 43 LFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAM 102
Query: 171 DG 172
DG
Sbjct: 103 DG 104
>TAIR|locus:2172144 [details] [associations]
symbol:AT5G54580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB016879 HOGENOM:HOG000276232
HSSP:Q61474 UniGene:At.52694 EMBL:AY072101 EMBL:AY096589
EMBL:AY085234 IPI:IPI00521049 RefSeq:NP_200269.1 UniGene:At.20805
ProteinModelPortal:Q9FIU6 SMR:Q9FIU6 IntAct:Q9FIU6 PaxDb:Q9FIU6
PRIDE:Q9FIU6 EnsemblPlants:AT5G54580.1 GeneID:835546
KEGG:ath:AT5G54580 TAIR:At5g54580 eggNOG:NOG324885
InParanoid:Q9FIU6 OMA:IKGMDGK PhylomeDB:Q9FIU6
ProtClustDB:CLSN2696829 ArrayExpress:Q9FIU6 Genevestigator:Q9FIU6
Uniprot:Q9FIU6
Length = 156
Score = 119 (46.9 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 111 LYIDSLS-RNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLY 169
L++ LS R +EG LR F+ FGEV D ++V DR +G G+VR+ T D+ K
Sbjct: 58 LFVSGLSKRTTSEG-LRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAG 116
Query: 170 MDG 172
MDG
Sbjct: 117 MDG 119
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 118 (46.6 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQ 167
S L+I LS ++ LR+ F++FG+VVD ++++DR RG G+V F A A
Sbjct: 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAI 93
Query: 168 LYMDG 172
MDG
Sbjct: 94 SEMDG 98
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 117 (46.2 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
+Y+ +LS + LRE FS +G VVD ++ DR + RG G+V + + ++AE A M
Sbjct: 5 VYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGM 64
Query: 171 DG 172
DG
Sbjct: 65 DG 66
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 115 (45.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQ 167
S L++ LS + LR++FS FG++ + L+ D P+G G++ F + DA KA
Sbjct: 6 SAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKAL 65
Query: 168 LYMDG 172
+DG
Sbjct: 66 KSLDG 70
>UNIPROTKB|H3BR27 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 HGNC:HGNC:9910
ChiTaRS:RBMX SMR:H3BR27 Ensembl:ENST00000464781
Ensembl:ENST00000568578 Uniprot:H3BR27
Length = 78
Score = 114 (45.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
>UNIPROTKB|K7GMF5 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000032763 Uniprot:K7GMF5
Length = 80
Score = 114 (45.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 171 DG 172
+G
Sbjct: 72 NG 73
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 114 (45.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
>UNIPROTKB|K7GQ39 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000033155 Uniprot:K7GQ39
Length = 101
Score = 114 (45.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 171 DG 172
+G
Sbjct: 72 NG 73
>ZFIN|ZDB-GENE-030131-5228 [details] [associations]
symbol:rnps1 "RNA binding protein S1, serine-rich
domain" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5228 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q9V535 GeneTree:ENSGT00700000104336 CTD:10921
eggNOG:NOG331533 HOGENOM:HOG000044325 KO:K14325 EMBL:BC057251
EMBL:BC065953 IPI:IPI00490683 RefSeq:NP_956055.1 UniGene:Dr.75879
ProteinModelPortal:Q6PG31 STRING:Q6PG31 Ensembl:ENSDART00000128731
GeneID:327020 KEGG:dre:327020 InParanoid:Q6PG31 NextBio:20809844
Bgee:Q6PG31 Uniprot:Q6PG31
Length = 283
Score = 130 (50.8 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 24/63 (38%), Positives = 43/63 (68%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
LY+ L+RNV + H++EIF+ +G++ +++ DR N+ +G YV +++ DA+KA +
Sbjct: 139 LYLGRLTRNVTKDHIQEIFATYGKIKMIDMPSDRLHPNVSKGYAYVEYESPEDAQKALKH 198
Query: 170 MDG 172
MDG
Sbjct: 199 MDG 201
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 119 (46.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 112 (44.5 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L++ LSR L++ F++FG++VD ++ DR +G G+V + T DAEKA+ M
Sbjct: 36 LFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEM 95
Query: 171 D 171
+
Sbjct: 96 N 96
>WB|WBGene00004388 [details] [associations]
symbol:rnp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0040020 "regulation of meiosis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0007281 GO:GO:0040020 EMBL:FO080195
GeneTree:ENSGT00700000104336 eggNOG:NOG331533 KO:K14325
RefSeq:NP_497276.2 ProteinModelPortal:Q21155 SMR:Q21155
IntAct:Q21155 STRING:Q21155 PaxDb:Q21155 EnsemblMetazoa:K02F3.11.1
EnsemblMetazoa:K02F3.11.2 GeneID:175244 KEGG:cel:CELE_K02F3.11
UCSC:K02F3.11.1 CTD:175244 WormBase:K02F3.11 HOGENOM:HOG000015855
InParanoid:Q21155 OMA:MIDMPVN NextBio:887378 Uniprot:Q21155
Length = 289
Score = 130 (50.8 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 42/111 (37%), Positives = 56/111 (50%)
Query: 113 IDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVN-LPRGSGYVRFKTRADAEKAQLYMD 171
I +LSRNV + HL EIFS +G + +V+L DR N + RG GYV + DAEK+ +MD
Sbjct: 137 IKNLSRNVLKTHLEEIFSIYGAIKNVDLPPDRFHNHVHRGYGYVEYDNLEDAEKSIKHMD 196
Query: 172 GFHRXXXXXXXXXREIVRELIMSVLILRRMGQNDQENPLPVGSHPP-RHGG 221
G + I R+ SV RR + +P P P R GG
Sbjct: 197 G-GQIDGMAVHVEMTIGRQ---SVPFQRRSSPFRRRSPPPRDRMSPMRRGG 243
>UNIPROTKB|E1BV45 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:AADN02049470
IPI:IPI00602926 ProteinModelPortal:E1BV45
Ensembl:ENSGALT00000015109 OMA:LNPPKCT Uniprot:E1BV45
Length = 243
Score = 128 (50.1 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 25/63 (39%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
+++ L+RNV + H+ EIFS +G++ +++ +DR +L +G YV F+ DAEKA +
Sbjct: 163 VHVGRLTRNVTKDHIMEIFSTYGKIKMIDMPVDRLNPHLSKGYAYVEFENPDDAEKALKH 222
Query: 170 MDG 172
MDG
Sbjct: 223 MDG 225
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 118 (46.6 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L+I L+ + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 2 SDEGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKD 61
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 62 AMMAMNG 68
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 111 (44.1 bits), Expect = 3.7e-06, P = 3.7e-06
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQ 167
S L++ +S + E L + FS +G+V+ V+++MD+ P+G YV F ++ +AEKA
Sbjct: 20 SSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKAL 79
Query: 168 LYMD 171
L ++
Sbjct: 80 LELN 83
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 121 (47.7 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ LS E LR+ F FG ++ + +VMD+ N P+G ++R++T +A KA M
Sbjct: 79 LYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGM 138
Query: 171 DG 172
G
Sbjct: 139 HG 140
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 119 (46.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 119 (46.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 119 (46.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 119 (46.9 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>FB|FBgn0037707 [details] [associations]
symbol:RnpS1 "RNA-binding protein S1" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding"
evidence=ISS;NAS] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=NAS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P52298
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533 KO:K14325
EMBL:AY118927 EMBL:AJ459409 RefSeq:NP_649903.1 UniGene:Dm.23312
SMR:Q9VHC0 MINT:MINT-1584472 STRING:Q9VHC0
EnsemblMetazoa:FBtr0082066 GeneID:41147 KEGG:dme:Dmel_CG16788
UCSC:CG16788-RA FlyBase:FBgn0037707 InParanoid:Q9VHC0 OMA:GYGYVDY
OrthoDB:EOG4QFTWV GenomeRNAi:41147 NextBio:822407 Uniprot:Q9VHC0
Length = 374
Score = 130 (50.8 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 27/63 (42%), Positives = 40/63 (63%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
+++ L+RNV + H+ EIFS+FG+V +VE +DR N RG +V + T D E A +
Sbjct: 221 IHVGRLTRNVTKDHVFEIFSSFGDVKNVEFPVDRFHPNFGRGVAFVEYATPEDCESAMKH 280
Query: 170 MDG 172
MDG
Sbjct: 281 MDG 283
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 119 (46.9 bits), Expect = 5.6e-06, P = 5.6e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 109 (43.4 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I LS E L E FS G+VV+ ++VMDR + +G G+V F + +A+KA +
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEF 95
Query: 171 DG 172
+G
Sbjct: 96 NG 97
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 118 (46.6 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 118 (46.6 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 118 (46.6 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>TAIR|locus:2179624 [details] [associations]
symbol:AT5G19030 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00544212 RefSeq:NP_197404.2
UniGene:At.31343 ProteinModelPortal:F4JZK9 SMR:F4JZK9
EnsemblPlants:AT5G19030.1 GeneID:832022 KEGG:ath:AT5G19030
OMA:RTISCVA PhylomeDB:F4JZK9 Uniprot:F4JZK9
Length = 172
Score = 118 (46.6 bits), Expect = 7.3e-06, P = 7.3e-06
Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L++ S +V+EG L+++FS FG+V +V+++ + G GYV F ++ DA+ A M
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAM 138
Query: 171 DG 172
+G
Sbjct: 139 NG 140
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 107 (42.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 107 (42.7 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 119 (46.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|H3BV80 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1
ProteinModelPortal:H3BV80 SMR:H3BV80 Ensembl:ENST00000569598
Bgee:H3BV80 Uniprot:H3BV80
Length = 211
Score = 121 (47.7 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 69 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 128
Query: 170 MDG 172
MDG
Sbjct: 129 MDG 131
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 105 (42.0 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L++ LS ++ L++ F++FGEV + ++ DR RG G+V F A A M
Sbjct: 37 LFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEM 96
Query: 171 DG 172
DG
Sbjct: 97 DG 98
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 119 (46.9 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 114 (45.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L + LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+ A + M
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 171 DG 172
+G
Sbjct: 68 NG 69
>UNIPROTKB|E1C131 [details] [associations]
symbol:E1C131 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02067637 EMBL:AADN02067638
EMBL:AADN02067639 EMBL:AADN02067640 EMBL:AADN02067641
EMBL:AADN02067642 EMBL:AADN02067643 EMBL:AADN02067644
EMBL:AADN02067645 EMBL:AADN02067646 EMBL:AADN02067647
EMBL:AADN02067648 EMBL:AADN02067649 EMBL:AADN02067650
EMBL:AADN02067651 EMBL:AADN02067652 EMBL:AADN02067653
EMBL:AADN02067654 EMBL:AADN02067655 EMBL:AADN02067656
EMBL:AADN02067657 EMBL:AADN02067658 EMBL:AADN02067659
IPI:IPI00822398 ProteinModelPortal:E1C131
Ensembl:ENSGALT00000029259 OMA:YCHRESA Uniprot:E1C131
Length = 123
Score = 104 (41.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 18/63 (28%), Positives = 39/63 (61%)
Query: 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAE 164
++D++ L+I + RN++E L+ +F FG++ ++ ++ DR + +G ++ + R A
Sbjct: 48 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESAL 107
Query: 165 KAQ 167
KAQ
Sbjct: 108 KAQ 110
>UNIPROTKB|F5H0I5 [details] [associations]
symbol:NOL8 "Nucleolar protein 8" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL136097 HGNC:HGNC:23387
IPI:IPI01013620 ProteinModelPortal:F5H0I5 SMR:F5H0I5
Ensembl:ENST00000545444 ArrayExpress:F5H0I5 Bgee:F5H0I5
Uniprot:F5H0I5
Length = 130
Score = 104 (41.7 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/112 (25%), Positives = 52/112 (46%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVM--DRAVNLPRGSGYVRFKT-RADAEKAQ 167
LY+ LS++++E L+ FS FGEV DVE++ D N + Y+ AD +K
Sbjct: 10 LYVGGLSQDISEADLQNQFSRFGEVSDVEIITRKDDQGNPQKVFAYINISVAEADLKKC- 68
Query: 168 LYMDGFHRXXXXXXXXXREIVRELIMSVLILRRMGQNDQENPLPVGSHPPRH 219
M ++ ++ +E + ++++R+ Q + L V RH
Sbjct: 69 --MSVLNKTKWKGGTLQIQLAKESFLHRMVIQRISQRTSSSVLTVNVKQRRH 118
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 119 (46.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|H3BMS0 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1
ProteinModelPortal:H3BMS0 SMR:H3BMS0 Ensembl:ENST00000567147
Bgee:H3BMS0 Uniprot:H3BMS0
Length = 257
Score = 121 (47.7 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 140 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 199
Query: 170 MDG 172
MDG
Sbjct: 200 MDG 202
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 114 (45.2 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L + LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+ A + M
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 171 DG 172
+G
Sbjct: 68 NG 69
>UNIPROTKB|H3BMM9 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000561518
Bgee:H3BMM9 Uniprot:H3BMM9
Length = 284
Score = 121 (47.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222
Query: 170 MDG 172
MDG
Sbjct: 223 MDG 225
>UNIPROTKB|Q8EK89 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 109 (43.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQ 167
++ LY+ +L V+EG ++ +F FG V V LV DR +G G+V + A A+KA
Sbjct: 63 TMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEM-SEAGAQKAM 121
Query: 168 LYMDGFH 174
+ ++ F+
Sbjct: 122 VKLNDFN 128
>TIGR_CMR|SO_0208 [details] [associations]
symbol:SO_0208 "RNA-binding protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR HSSP:P19339
HOGENOM:HOG000269562 RefSeq:NP_715849.1 ProteinModelPortal:Q8EK89
GeneID:1168093 KEGG:son:SO_0208 PATRIC:23520091 OMA:YTGPTMT
ProtClustDB:CLSK905649 Uniprot:Q8EK89
Length = 154
Score = 109 (43.4 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQ 167
++ LY+ +L V+EG ++ +F FG V V LV DR +G G+V + A A+KA
Sbjct: 63 TMTLYVGNLPYRVHEGEVKVLFGEFGPVNSVRLVRDRKTGRRKGFGFVEM-SEAGAQKAM 121
Query: 168 LYMDGFH 174
+ ++ F+
Sbjct: 122 VKLNDFN 128
>UNIPROTKB|E9PKU1 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI00982591 ProteinModelPortal:E9PKU1 SMR:E9PKU1
Ensembl:ENST00000528434 ArrayExpress:E9PKU1 Bgee:E9PKU1
Uniprot:E9PKU1
Length = 114
Score = 102 (41.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSG--YVRFKTRADAE 164
D++ +++ + R +E LRE+F +G V ++ ++ DR+ N P+ G +V F TR A
Sbjct: 41 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAAL 100
Query: 165 KAQ 167
+AQ
Sbjct: 101 EAQ 103
>UNIPROTKB|E9PQK4 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI00982054 ProteinModelPortal:E9PQK4 SMR:E9PQK4
Ensembl:ENST00000525841 ArrayExpress:E9PQK4 Bgee:E9PQK4
Uniprot:E9PQK4
Length = 87
Score = 102 (41.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSG--YVRFKTRADAE 164
D++ +++ + R +E LRE+F +G V ++ ++ DR+ N P+ G +V F TR A
Sbjct: 14 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAAL 73
Query: 165 KAQ 167
+AQ
Sbjct: 74 EAQ 76
>UNIPROTKB|E9PSH0 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0007286 "spermatid development"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 EMBL:AC090559
HGNC:HGNC:2549 ChiTaRS:CELF1 GO:GO:0006376 IPI:IPI00984001
ProteinModelPortal:E9PSH0 SMR:E9PSH0 Ensembl:ENST00000530151
ArrayExpress:E9PSH0 Bgee:E9PSH0 Uniprot:E9PSH0
Length = 95
Score = 102 (41.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSG--YVRFKTRADAE 164
D++ +++ + R +E LRE+F +G V ++ ++ DR+ N P+ G +V F TR A
Sbjct: 14 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAAL 73
Query: 165 KAQ 167
+AQ
Sbjct: 74 EAQ 76
>UNIPROTKB|F5H0D8 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI01013116 ProteinModelPortal:F5H0D8 SMR:F5H0D8
Ensembl:ENST00000535982 ArrayExpress:F5H0D8 Bgee:F5H0D8
Uniprot:F5H0D8
Length = 103
Score = 102 (41.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSG--YVRFKTRADAE 164
D++ +++ + R +E LRE+F +G V ++ ++ DR+ N P+ G +V F TR A
Sbjct: 41 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAAL 100
Query: 165 KAQ 167
+AQ
Sbjct: 101 EAQ 103
>UNIPROTKB|F5H4Y5 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0007286 "spermatid
development" evidence=IEA] [GO:0031369 "translation initiation
factor binding" evidence=IEA] [GO:0040018 "positive regulation of
multicellular organism growth" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007286 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040018
GO:GO:0003676 EMBL:AC090559 HGNC:HGNC:2549 ChiTaRS:CELF1
GO:GO:0006376 IPI:IPI01015313 ProteinModelPortal:F5H4Y5 SMR:F5H4Y5
Ensembl:ENST00000543178 ArrayExpress:F5H4Y5 Bgee:F5H4Y5
Uniprot:F5H4Y5
Length = 79
Score = 102 (41.0 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSG--YVRFKTRADAE 164
D++ +++ + R +E LRE+F +G V ++ ++ DR+ N P+ G +V F TR A
Sbjct: 14 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAAL 73
Query: 165 KAQ 167
+AQ
Sbjct: 74 EAQ 76
>UNIPROTKB|H3BTC0 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC009065 HGNC:HGNC:10080 ChiTaRS:RNPS1 Ensembl:ENST00000565870
Bgee:H3BTC0 Uniprot:H3BTC0
Length = 302
Score = 121 (47.7 bits), Expect = 3.8e-05, P = 3.8e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222
Query: 170 MDG 172
MDG
Sbjct: 223 MDG 225
>UNIPROTKB|A6QR16 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9913 "Bos taurus" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 EMBL:BC150075
IPI:IPI00867269 RefSeq:NP_001095311.1 UniGene:Bt.20502
ProteinModelPortal:A6QR16 STRING:A6QR16 Ensembl:ENSBTAT00000013151
GeneID:504506 KEGG:bta:504506 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 InParanoid:A6QR16 KO:K14325 OMA:TKRKDRT
OrthoDB:EOG44J2KM NextBio:20866696 Uniprot:A6QR16
Length = 305
Score = 121 (47.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222
Query: 170 MDG 172
MDG
Sbjct: 223 MDG 225
>UNIPROTKB|F6XEW2 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 CTD:10921 KO:K14325 OMA:TKRKDRT
Ensembl:ENSCAFT00000030839 EMBL:AAEX03004619 RefSeq:XP_537005.1
ProteinModelPortal:F6XEW2 GeneID:479880 KEGG:cfa:479880
Uniprot:F6XEW2
Length = 305
Score = 121 (47.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222
Query: 170 MDG 172
MDG
Sbjct: 223 MDG 225
>UNIPROTKB|Q15287 [details] [associations]
symbol:RNPS1 "RNA-binding protein with serine-rich domain
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0035145
"exon-exon junction complex" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IMP;IDA;TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0016071 "mRNA metabolic process" evidence=TAS]
[GO:0031124 "mRNA 3'-end processing" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471112
TCDB:3.A.18.1.1 GO:GO:0003730 GO:GO:0006406 GO:GO:0000398
Reactome:REACT_1788 EMBL:AC009065 GO:GO:0006369 GO:GO:0031124
Reactome:REACT_78 CTD:10921 eggNOG:NOG331533 KO:K14325 OMA:TKRKDRT
OrthoDB:EOG44J2KM EMBL:L37368 EMBL:AF015608 EMBL:AF274003
EMBL:AK289955 EMBL:AK293343 EMBL:AK303100 EMBL:AK316132
EMBL:BC001659 EMBL:BC001838 EMBL:BC108316 EMBL:AF247662
IPI:IPI00033561 IPI:IPI00479871 IPI:IPI00783594 PIR:JC4525
RefSeq:NP_006702.1 RefSeq:NP_542161.1 UniGene:Hs.355643
UniGene:Hs.507343 UniGene:Hs.733012 PDB:4A8X PDBsum:4A8X
ProteinModelPortal:Q15287 SMR:Q15287 DIP:DIP-32943N IntAct:Q15287
MINT:MINT-1474621 STRING:Q15287 PhosphoSite:Q15287 DMDM:74754492
PaxDb:Q15287 PRIDE:Q15287 DNASU:10921 Ensembl:ENST00000301730
Ensembl:ENST00000320225 Ensembl:ENST00000397086
Ensembl:ENST00000565678 Ensembl:ENST00000566458
Ensembl:ENST00000568631 GeneID:10921 KEGG:hsa:10921 UCSC:uc002cpt.3
UCSC:uc002cpx.3 GeneCards:GC16M002303 H-InvDB:HIX0031789
HGNC:HGNC:10080 HPA:HPA044014 MIM:606447 neXtProt:NX_Q15287
PharmGKB:PA34453 HOVERGEN:HBG053138 InParanoid:Q15287 ChiTaRS:RNPS1
GenomeRNAi:10921 NextBio:41487 ArrayExpress:Q15287 Bgee:Q15287
CleanEx:HS_RNPS1 Genevestigator:Q15287 GermOnline:ENSG00000205937
Uniprot:Q15287
Length = 305
Score = 121 (47.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222
Query: 170 MDG 172
MDG
Sbjct: 223 MDG 225
>MGI|MGI:97960 [details] [associations]
symbol:Rnps1 "ribonucleic acid binding protein S1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=ISO] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:97960 GO:GO:0005737
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OMA:TKRKDRT OrthoDB:EOG44J2KM
HOVERGEN:HBG053138 ChiTaRS:RNPS1 EMBL:AK146443 EMBL:AK151150
EMBL:AK165905 EMBL:BC002061 EMBL:BC008089 IPI:IPI00462424
IPI:IPI00656166 RefSeq:NP_001073596.1 RefSeq:NP_001073597.1
RefSeq:NP_033096.2 UniGene:Mm.1951 ProteinModelPortal:Q99M28
SMR:Q99M28 STRING:Q99M28 PhosphoSite:Q99M28 PaxDb:Q99M28
PRIDE:Q99M28 Ensembl:ENSMUST00000088512 Ensembl:ENSMUST00000115371
Ensembl:ENSMUST00000163717 GeneID:19826 KEGG:mmu:19826
UCSC:uc008avs.1 UCSC:uc008avu.1 NextBio:297301 Bgee:Q99M28
CleanEx:MM_RNPS1 Genevestigator:Q99M28
GermOnline:ENSMUSG00000034681 Uniprot:Q99M28
Length = 305
Score = 121 (47.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222
Query: 170 MDG 172
MDG
Sbjct: 223 MDG 225
>RGD|1307522 [details] [associations]
symbol:Rnps1 "ribonucleic acid binding protein S1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307522
GO:GO:0005737 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OrthoDB:EOG44J2KM HOVERGEN:HBG053138
EMBL:BC079014 IPI:IPI00464732 RefSeq:NP_001011890.1 UniGene:Rn.7235
ProteinModelPortal:Q6AYK1 STRING:Q6AYK1 Ensembl:ENSRNOT00000010915
GeneID:287113 KEGG:rno:287113 UCSC:RGD:1307522 NextBio:625524
ArrayExpress:Q6AYK1 Genevestigator:Q6AYK1
GermOnline:ENSRNOG00000008703 Uniprot:Q6AYK1
Length = 305
Score = 121 (47.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222
Query: 170 MDG 172
MDG
Sbjct: 223 MDG 225
>UNIPROTKB|Q6AYK1 [details] [associations]
symbol:Rnps1 "RNA-binding protein with serine-rich domain
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307522
GO:GO:0005737 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GeneTree:ENSGT00700000104336 CTD:10921 eggNOG:NOG331533
HOGENOM:HOG000044325 KO:K14325 OrthoDB:EOG44J2KM HOVERGEN:HBG053138
EMBL:BC079014 IPI:IPI00464732 RefSeq:NP_001011890.1 UniGene:Rn.7235
ProteinModelPortal:Q6AYK1 STRING:Q6AYK1 Ensembl:ENSRNOT00000010915
GeneID:287113 KEGG:rno:287113 UCSC:RGD:1307522 NextBio:625524
ArrayExpress:Q6AYK1 Genevestigator:Q6AYK1
GermOnline:ENSRNOG00000008703 Uniprot:Q6AYK1
Length = 305
Score = 121 (47.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 163 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 222
Query: 170 MDG 172
MDG
Sbjct: 223 MDG 225
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 124 (48.7 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
+++ LS VN+ L + FS FG V + ++ D RG G+V F+ RADAEKA M
Sbjct: 184 IFVGDLSNEVNDEVLLQAFSAFGSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSM 243
Query: 171 DG 172
DG
Sbjct: 244 DG 245
>UNIPROTKB|E2R2P7 [details] [associations]
symbol:RNPS1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R2P7 Ensembl:ENSCAFT00000030839 Uniprot:E2R2P7
Length = 320
Score = 121 (47.7 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 24/63 (38%), Positives = 42/63 (66%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS +G++ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 162 VHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKH 221
Query: 170 MDG 172
MDG
Sbjct: 222 MDG 224
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 121 (47.7 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 22/65 (33%), Positives = 41/65 (63%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L RN+ + + ++FS FG +++ +++D+ L RG ++RF R++AE+A
Sbjct: 108 LYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 171 DGFHR 175
+G H+
Sbjct: 168 NG-HK 171
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 119 (46.9 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 101 (40.6 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
+++ LS + ++ F+ FG++ D +V D A +G G+V F + DAE A ++M
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 119
Query: 171 DG 172
G
Sbjct: 120 GG 121
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 101 (40.6 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ +S E LR +FS G V V ++ D +G GYVR T +A++A +
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 171 DG 172
DG
Sbjct: 65 DG 66
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 101 (40.6 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ +S E LR +FS G V V ++ D +G GYVR T +A++A +
Sbjct: 5 LYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIETL 64
Query: 171 DG 172
DG
Sbjct: 65 DG 66
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 111 (44.1 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L++ L+ E L ++FS +G+V +V +V DR RG G+V F+ DA+ A + M
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 171 DG 172
+G
Sbjct: 68 NG 69
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 114 (45.2 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L + LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+ A + M
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 171 DG 172
+G
Sbjct: 68 NG 69
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 119 (46.9 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L++ LS + NE L ++FS +G++ +V +V DR RG G+V F+ DA+
Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 63 AMMAMNG 69
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 117 (46.2 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
LY+ +LSRN+N+ L IFS +G +V ++ D+ PRG +VR+ R +A++A
Sbjct: 181 LYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEA 236
Score = 44 (20.5 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 6/8 (75%), Positives = 7/8 (87%)
Query: 360 HHPTLHHL 367
HHP LHH+
Sbjct: 327 HHPQLHHM 334
Score = 41 (19.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 348 GEGEGHLQDVGDHHPTLHH 366
G G H+ G HP HH
Sbjct: 280 GGGPPHMGPGGPMHPPHHH 298
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 114 (45.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 171 DG 172
+G
Sbjct: 72 NG 73
Score = 40 (19.1 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 143 SSSRGPLPVKRGPPPRSGG 161
>UNIPROTKB|K7GKR9 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000035101 Uniprot:K7GKR9
Length = 196
Score = 114 (45.2 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 114 (45.2 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 7.2e-05, Sum P(2) = 7.2e-05
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 141 SSSRGPLPVKRGPPPRSGG 159
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 113 (44.8 bits), Expect = 7.7e-05, P = 7.7e-05
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 99 (39.9 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
L+I L+ + + LRE FS +G + + +V DR N RG G+VRF + +A+ A
Sbjct: 4 LFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAA 59
>UNIPROTKB|F2Z2U1 [details] [associations]
symbol:RBMY1A1 "RNA-binding motif protein, Y chromosome,
family 1 member E" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010141 HGNC:HGNC:9912
HGNC:HGNC:23914 EMBL:AC007322 HGNC:HGNC:23915 HGNC:HGNC:23916
IPI:IPI00916472 SMR:F2Z2U1 Ensembl:ENST00000358944
Ensembl:ENST00000361046 Ensembl:ENST00000382639
Ensembl:ENST00000382653 Uniprot:F2Z2U1
Length = 81
Score = 99 (39.9 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+R NE L+ +F G + +V L+ DR + RG ++ F+ ADA+ A M
Sbjct: 10 LFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRT-SKSRGFAFITFENPADAKNAAKDM 68
Query: 171 DG 172
+G
Sbjct: 69 NG 70
>UNIPROTKB|F6UBL3 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
EMBL:AC009690 IPI:IPI00909307 HGNC:HGNC:14059
Ensembl:ENST00000437872 Bgee:F6UBL3 Uniprot:F6UBL3
Length = 133
Score = 99 (39.9 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 17/63 (26%), Positives = 37/63 (58%)
Query: 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAE 164
++D++ L++ + R ++E L+ +F FG + ++ ++ DR L +G ++ + R A
Sbjct: 13 DHDAIKLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSAL 72
Query: 165 KAQ 167
KAQ
Sbjct: 73 KAQ 75
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 114 (45.2 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 140 SSSRGPLPVKRGPPPRSGG 158
>UNIPROTKB|F1M3H5 [details] [associations]
symbol:F1M3H5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00564869
Ensembl:ENSRNOT00000037606 OMA:SQCSSPC Uniprot:F1M3H5
Length = 272
Score = 117 (46.2 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRA-VNLPRGSGYVRFKTRADAEKAQLY 169
++I L+RNV + H+ EIFS + E+ +++ ++R +L +G YV F+ +AEKA +
Sbjct: 132 VHIGRLTRNVTKDHIMEIFSTYREIKMIDMPVERIHPHLSKGYAYVEFENPDEAEKALKH 191
Query: 170 MDG 172
MDG
Sbjct: 192 MDG 194
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 116 (45.9 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 141 SSSRGPLPVKRGPPPRSGG 159
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 119 (46.9 bits), Expect = 0.00011, P = 0.00011
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRA 161
E+D L+I +S + +E LRE FSNFGEV+ V ++ ++A PRG G+V F A
Sbjct: 2 ESDQGKLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPA 58
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 120 (47.3 bits), Expect = 0.00011, P = 0.00011
Identities = 25/62 (40%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
+++ LS VN+ L + FS FG V + ++ D RG G+V F+ R+DAEKA M
Sbjct: 178 IFVGDLSNEVNDEVLTQAFSVFGSVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSM 237
Query: 171 DG 172
DG
Sbjct: 238 DG 239
>UNIPROTKB|G3N117 [details] [associations]
symbol:LOC508834 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 EMBL:DAAA02019492
Ensembl:ENSBTAT00000063470 OMA:QIMATAV Uniprot:G3N117
Length = 272
Score = 116 (45.9 bits), Expect = 0.00012, P = 0.00012
Identities = 26/63 (41%), Positives = 37/63 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLP-RGSGYVRFKTRADAEKAQLY 169
+++ L+R V H+REIFS FG V ++L DR P +G YV F+ +A KA +
Sbjct: 133 VHVARLTRKVTREHIREIFSTFGRVRKIDLRRDRMRAHPSQGHAYVEFENPEEAAKALKH 192
Query: 170 MDG 172
MDG
Sbjct: 193 MDG 195
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 97 (39.2 bits), Expect = 0.00014, P = 0.00014
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
++I LS + + L++ FS FGEVVD L +D RG G+V FK +K
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK 55
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 97 (39.2 bits), Expect = 0.00014, P = 0.00014
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ +L + L+EI S FGEV+ ++++++ RG G++ + DAEK +
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDE-DAEKFMTGL 63
Query: 171 DG 172
+G
Sbjct: 64 NG 65
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 97 (39.2 bits), Expect = 0.00014, P = 0.00014
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
+Y+ SLS +V L+ F +GE+ + +L+MDR +G ++ + T+ A++A
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 97 (39.2 bits), Expect = 0.00014, P = 0.00014
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
+Y+ SLS +V L+ F +GE+ + +L+MDR +G ++ + T+ A++A
Sbjct: 20 IYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEA 75
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 97 (39.2 bits), Expect = 0.00014, P = 0.00014
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ +L + L+EI S FGEV+ ++++++ RG G++ + DAEK +
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDE-DAEKFMTGL 63
Query: 171 DG 172
+G
Sbjct: 64 NG 65
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 116 (45.9 bits), Expect = 0.00015, P = 0.00015
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I ++ +++E LRE F+ +GEVVD +++DR RG G+V F + A A +
Sbjct: 42 LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101
Query: 171 DG 172
DG
Sbjct: 102 DG 103
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 113 (44.8 bits), Expect = 0.00015, P = 0.00015
Identities = 24/67 (35%), Positives = 37/67 (55%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L+I LS + E L E FS +G + V+++ DR + RG G+V F+ DA+
Sbjct: 20 SDEGKLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKD 79
Query: 166 AQLYMDG 172
A M+G
Sbjct: 80 AMAAMNG 86
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 114 (45.2 bits), Expect = 0.00016, P = 0.00016
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAE 164
E+ S LY+ +L ++E +RE+F+ +G +VDV L+ + N RG +++F+ DAE
Sbjct: 123 ESTSSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAE 182
Query: 165 KAQLYMDGF 173
A+ MD +
Sbjct: 183 VAKYGMDRY 191
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 108 (43.1 bits), Expect = 0.00017, P = 0.00017
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQ 167
S LY+ +LS E ++E+FS G+V + + +D+ P G +V + TRADAE A
Sbjct: 42 SSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAM 101
Query: 168 LYMDG 172
+++G
Sbjct: 102 RFING 106
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 108 (43.1 bits), Expect = 0.00017, P = 0.00017
Identities = 23/65 (35%), Positives = 38/65 (58%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQ 167
S LY+ +LS E ++E+FS G+V + + +D+ P G +V + TRADAE A
Sbjct: 42 SSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEHAM 101
Query: 168 LYMDG 172
+++G
Sbjct: 102 RFING 106
>UNIPROTKB|Q2KGN9 [details] [associations]
symbol:MGCH7_ch7g296 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0043581 EMBL:CM000230
ProteinModelPortal:Q2KGN9 Uniprot:Q2KGN9
Length = 375
Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
Identities = 23/61 (37%), Positives = 39/61 (63%)
Query: 110 VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLY 169
++ I+ L++NV E HLR+IF +GE+ D++L ++R RG+ Y+ + DAE A +
Sbjct: 144 LIVIERLTKNVTEDHLRDIFGQYGEIRDLDLPINRQ-GTNRGTAYILYVQEPDAESAIAH 202
Query: 170 M 170
M
Sbjct: 203 M 203
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 116 (45.9 bits), Expect = 0.00017, P = 0.00017
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L R++ + + ++FS FG +++ +++D+ L RG ++RF R++AE+A
Sbjct: 108 LYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNF 167
Query: 171 DGFHR 175
+G H+
Sbjct: 168 NG-HK 171
>RGD|1587653 [details] [associations]
symbol:LOC688526 "similar to ribonucleic acid binding protein
S1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1587653 GO:GO:0005634
GO:GO:0005737 GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GeneTree:ENSGT00700000104336 IPI:IPI00560964
Ensembl:ENSRNOT00000037439 Uniprot:F1M6U2
Length = 301
Score = 115 (45.5 bits), Expect = 0.00019, P = 0.00019
Identities = 22/63 (34%), Positives = 43/63 (68%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAV-NLPRGSGYVRFKTRADAEKAQLY 169
++I+ L+RNV + H+ EIFS +G++ +++ ++R + +L +G YV F+ +AEK +
Sbjct: 159 VHIERLTRNVTKDHIMEIFSTYGKIKMIDMPVERILPHLSKGYVYVEFENPDEAEKTLKH 218
Query: 170 MDG 172
M+G
Sbjct: 219 MNG 221
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 114 (45.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 140 SSSRGPLPVKRGPPPRSGG 158
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 114 (45.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 141 SSSRGPLPVKRGPPPRSGG 159
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 114 (45.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 141 SSSRGPLPVKRGPPPRSGG 159
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 114 (45.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 141 SSSRGPLPVKRGPPPRSGG 159
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 114 (45.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 141 SSSRGPLPVKRGPPPRSGG 159
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 114 (45.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 141 SSSRGPLPVKRGPPPRSGG 159
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 114 (45.2 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 141 SSSRGPLPVKRGPPPRSGG 159
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 114 (45.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 11 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 70
Query: 171 DG 172
+G
Sbjct: 71 NG 72
Score = 40 (19.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 142 SSSRGPLPVKRGPPPRSGG 160
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 116 (45.9 bits), Expect = 0.00021, P = 0.00021
Identities = 18/62 (29%), Positives = 40/62 (64%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + +++ + ++FS +G ++ +++D+A + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 116 (45.9 bits), Expect = 0.00021, P = 0.00021
Identities = 18/62 (29%), Positives = 40/62 (64%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + +++ + ++FS +G ++ +++D+A + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 114 (45.2 bits), Expect = 0.00022, P = 0.00022
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 109 LVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQL 168
+ L +D+L+ + LR +F +G V DV + + PRG +VRF R DA+ A+
Sbjct: 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEA 73
Query: 169 YMDG 172
MDG
Sbjct: 74 AMDG 77
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 115 (45.5 bits), Expect = 0.00023, P = 0.00023
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L R + + + ++FS FG +++ +++D+ L RG ++RF R++AE+A
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 171 DGFHR 175
+G H+
Sbjct: 168 NG-HK 171
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 115 (45.5 bits), Expect = 0.00023, P = 0.00023
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L R + + + ++FS FG +++ +++D+ L RG ++RF R++AE+A
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 171 DGFHR 175
+G H+
Sbjct: 168 NG-HK 171
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 115 (45.5 bits), Expect = 0.00023, P = 0.00023
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L R + + + ++FS FG +++ +++D+ L RG ++RF R++AE+A
Sbjct: 108 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 171 DGFHR 175
+G H+
Sbjct: 168 NG-HK 171
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 95 (38.5 bits), Expect = 0.00023, P = 0.00023
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ +L+ V + L F+ +G V ++VMDRA RG G+V + +A+ A +
Sbjct: 5 LYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAGL 64
Query: 171 DG 172
+G
Sbjct: 65 NG 66
>TAIR|locus:2049339 [details] [associations]
symbol:AT2G21690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC007019 HOGENOM:HOG000276232 EMBL:AC007119
HSSP:Q14103 IPI:IPI00516548 PIR:B84604 RefSeq:NP_179762.1
UniGene:At.52858 ProteinModelPortal:Q9SJ28 SMR:Q9SJ28
EnsemblPlants:AT2G21690.1 GeneID:816707 KEGG:ath:AT2G21690
TAIR:At2g21690 eggNOG:NOG254172 InParanoid:Q9SJ28 OMA:RSKCVNV
PhylomeDB:Q9SJ28 ProtClustDB:CLSN2913216 ArrayExpress:Q9SJ28
Genevestigator:Q9SJ28 Uniprot:Q9SJ28
Length = 117
Score = 95 (38.5 bits), Expect = 0.00023, P = 0.00023
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
N ++ L ++ +E L +IFS FG V+D +++ DR R G+V F+
Sbjct: 4 NVEYTCFVRGLDQDTDEKDLTDIFSKFGNVIDSKIIYDRDTGKSRRFGFVTFEEEKSMTD 63
Query: 166 AQLYMD 171
A + MD
Sbjct: 64 AIMIMD 69
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 116 (45.9 bits), Expect = 0.00023, P = 0.00023
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS FG ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGL 215
Query: 171 DG 172
+G
Sbjct: 216 NG 217
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 115 (45.5 bits), Expect = 0.00024, P = 0.00024
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L R + + + ++FS FG +++ +++D+ L RG ++RF R++AE+A
Sbjct: 116 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 175
Query: 171 DGFHR 175
+G H+
Sbjct: 176 NG-HK 179
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADA 163
TE + L++ LS N+++ L+ F + G V+ ++M+RA RG GYV F++++ A
Sbjct: 164 TEEPA-TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 164 EKAQLYMDG 172
EKA M G
Sbjct: 223 EKALEEMQG 231
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 104 TENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADA 163
TE + L++ LS N+++ L+ F + G V+ ++M+RA RG GYV F++++ A
Sbjct: 164 TEEPA-TLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAA 222
Query: 164 EKAQLYMDG 172
EKA M G
Sbjct: 223 EKALEEMQG 231
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 113 (44.8 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V++ L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 138 SSSRGPLPVKRGPPPRSGG 156
>UNIPROTKB|Q9KVI6 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 104 (41.7 bits), Expect = 0.00025, P = 0.00025
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYV-----RFKTRADAEK 165
LY+ +L NE H++E+F+ FGEV V L+ D+ RG G+V + +T DA
Sbjct: 66 LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQTAIDALN 125
Query: 166 AQLYM 170
+ YM
Sbjct: 126 EKEYM 130
>TIGR_CMR|VC_0159 [details] [associations]
symbol:VC_0159 "RNA-binding protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0016070 HSSP:P33240
OMA:YTGPTMT PIR:D82358 RefSeq:NP_229816.1 ProteinModelPortal:Q9KVI6
DNASU:2614888 GeneID:2614888 KEGG:vch:VC0159 PATRIC:20079354
ProtClustDB:CLSK873887 Uniprot:Q9KVI6
Length = 152
Score = 104 (41.7 bits), Expect = 0.00025, P = 0.00025
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYV-----RFKTRADAEK 165
LY+ +L NE H++E+F+ FGEV V L+ D+ RG G+V + +T DA
Sbjct: 66 LYVGNLPYKANESHVKELFAEFGEVFAVRLMKDKRTGKRRGFGFVVIAASQAQTAIDALN 125
Query: 166 AQLYM 170
+ YM
Sbjct: 126 EKEYM 130
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 115 (45.5 bits), Expect = 0.00026, P = 0.00026
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L R + + + ++FS FG +++ +++D+ L RG ++RF R++AE+A
Sbjct: 135 LYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 194
Query: 171 DGFHR 175
+G H+
Sbjct: 195 NG-HK 198
>UNIPROTKB|C9JB16 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL161628 EMBL:AL445623 HGNC:HGNC:3313 IPI:IPI00645584
ProteinModelPortal:C9JB16 SMR:C9JB16 STRING:C9JB16
Ensembl:ENST00000423281 ArrayExpress:C9JB16 Bgee:C9JB16
Uniprot:C9JB16
Length = 90
Score = 94 (38.1 bits), Expect = 0.00029, P = 0.00029
Identities = 15/53 (28%), Positives = 33/53 (62%)
Query: 120 VNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYMDG 172
+ + L ++FS +G ++ +++D+ + RG G++RF R +AE+A ++G
Sbjct: 1 MTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 53
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 106 (42.4 bits), Expect = 0.00030, P = 0.00030
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+D L+I L+ NE L + F+ +G + +V +V DR RG G+V F+ DA+
Sbjct: 2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61
Query: 166 AQLYMDG 172
A + M+G
Sbjct: 62 AMMAMNG 68
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 113 (44.8 bits), Expect = 0.00030, P = 0.00030
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
+++ +S + +E LRE FS +GEVVD ++++DR RG +V F + +A A + +
Sbjct: 36 IFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNA-MQL 94
Query: 171 DG 172
DG
Sbjct: 95 DG 96
>TAIR|locus:2023903 [details] [associations]
symbol:ATE1 "ATPase E1" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 UniGene:At.66943
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK228412 IPI:IPI00541371
RefSeq:NP_563931.2 ProteinModelPortal:Q0WRA3 SMR:Q0WRA3
STRING:Q0WRA3 PaxDb:Q0WRA3 PRIDE:Q0WRA3 EnsemblPlants:AT1G13690.1
GeneID:837930 KEGG:ath:AT1G13690 TAIR:At1g13690 InParanoid:Q0WRA3
OMA:AQPIWAD PhylomeDB:Q0WRA3 ProtClustDB:CLSN2690943
Genevestigator:Q0WRA3 Uniprot:Q0WRA3
Length = 177
Score = 107 (42.7 bits), Expect = 0.00032, P = 0.00032
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L+ VNE L F FG++ DV+ +D+A R G+V F R DA A M
Sbjct: 15 LYVGGLADEVNESILHAAFIPFGDIKDVKTPLDQANQKHRSFGFVTFLEREDASAAMDNM 74
Query: 171 DG 172
DG
Sbjct: 75 DG 76
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 99 (39.9 bits), Expect = 0.00032, P = 0.00032
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAE 164
E D++ L++ + R++ E L+ IF FG + ++ ++ D+ L +G ++ + R A
Sbjct: 3 EPDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSAL 62
Query: 165 KAQ 167
KAQ
Sbjct: 63 KAQ 65
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 117 (46.2 bits), Expect = 0.00034, P = 0.00034
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ SL N+ E LR IF FG++ ++L+MD +G G++ + DA+KA +
Sbjct: 337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQL 396
Query: 171 DGF 173
+GF
Sbjct: 397 NGF 399
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 105 (42.0 bits), Expect = 0.00036, P = 0.00036
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L++ LS + +E L +FS +G++ +V +V DR RG G+V F+ DA+ A M
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 171 DG 172
+G
Sbjct: 68 NG 69
>UNIPROTKB|P52299 [details] [associations]
symbol:ncbp2 "Nuclear cap-binding protein subunit 2"
species:8355 "Xenopus laevis" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=ISS]
[GO:0000340 "RNA 7-methylguanosine cap binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005845
"mRNA cap binding complex" evidence=ISS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=ISS] [GO:0006408 "snRNA
export from nucleus" evidence=IDA] [GO:0006446 "regulation of
translational initiation" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] [GO:0046833 "positive regulation of RNA export from
nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0000184 GO:GO:0000166 GO:GO:0006446
Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0005845 GO:GO:0000340
GO:GO:0051028 GO:GO:0006370 GO:GO:0045292 HOVERGEN:HBG052581
PANTHER:PTHR18847 KO:K12883 CTD:22916 GO:GO:0046833 GO:GO:0006408
EMBL:BC072902 EMBL:X84788 PIR:I51602 RefSeq:NP_001167476.1
UniGene:Xl.43439 UniGene:Xl.81730 ProteinModelPortal:P52299
SMR:P52299 GeneID:100380998 KEGG:xla:100380998
Xenbase:XB-GENE-1005792 Uniprot:P52299
Length = 153
Score = 103 (41.3 bits), Expect = 0.00038, P = 0.00038
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 108 SLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQ 167
S LY+ +LS E + E+FS G+V + + +D+ G +V + TRADAE+A
Sbjct: 36 SCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRADAEQAM 95
Query: 168 LYMDG 172
+++G
Sbjct: 96 RFING 100
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 113 (44.8 bits), Expect = 0.00038, P = 0.00038
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L R + + + ++FS FG +++ +++D+ L RG ++RF R++AE+A
Sbjct: 108 LYISGLPRTMTQKDVEDMFSPFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSF 167
Query: 171 DGFHR 175
+G H+
Sbjct: 168 NG-HK 171
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 114 (45.2 bits), Expect = 0.00039, P = 0.00039
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V+V L+ DR N RG +V F++ ADA+ A M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 113 (44.8 bits), Expect = 0.00042, P = 0.00042
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>UNIPROTKB|G3MY63 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00530000063480 EMBL:DAAA02005516 EMBL:DAAA02005517
EMBL:DAAA02005518 Ensembl:ENSBTAT00000065390 Uniprot:G3MY63
Length = 271
Score = 111 (44.1 bits), Expect = 0.00045, P = 0.00044
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+++ + NE LR+ FS +G V +V++V DRA + +G G+V F+T+ DA+K
Sbjct: 47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQK 100
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 113 (44.8 bits), Expect = 0.00045, P = 0.00045
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 92 (37.4 bits), Expect = 0.00048, P = 0.00048
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
N + +L++ + ++E L +IFS+FG++ ++E+ ++ RG +V + DA+
Sbjct: 5 NATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKH 64
Query: 166 AQLYMDGF 173
A M+ F
Sbjct: 65 ALYNMNNF 72
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 92 (37.4 bits), Expect = 0.00048, P = 0.00048
Identities = 18/68 (26%), Positives = 38/68 (55%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
N + +L++ + ++E L +IFS+FG++ ++E+ ++ RG +V + DA+
Sbjct: 5 NATDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKH 64
Query: 166 AQLYMDGF 173
A M+ F
Sbjct: 65 ALYNMNNF 72
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 92 (37.4 bits), Expect = 0.00048, P = 0.00048
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
+Y+ + E L FS+ G++ +V +V DR PRG ++ F A++A M
Sbjct: 7 VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQM 66
Query: 171 DG 172
+G
Sbjct: 67 NG 68
>UNIPROTKB|Q8N9W6 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0008494
"translation activator activity" evidence=IDA] [GO:0045948
"positive regulation of translational initiation" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0007126 "meiosis"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0007126
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 EMBL:CH471063
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0008494
EMBL:AF272858 EMBL:AM295005 EMBL:AK058099 EMBL:AK093453
EMBL:AK097795 EMBL:AC011997 EMBL:BC033674 IPI:IPI00056506
IPI:IPI00377133 IPI:IPI00396276 IPI:IPI00871244 RefSeq:NP_149019.1
RefSeq:NP_932074.1 UniGene:Hs.169797 ProteinModelPortal:Q8N9W6
SMR:Q8N9W6 IntAct:Q8N9W6 STRING:Q8N9W6 PhosphoSite:Q8N9W6
DMDM:44887719 PRIDE:Q8N9W6 DNASU:66037 Ensembl:ENST00000321801
Ensembl:ENST00000392296 Ensembl:ENST00000433157 GeneID:66037
KEGG:hsa:66037 UCSC:uc002uur.2 UCSC:uc002uus.2 UCSC:uc002uut.2
UCSC:uc002uuu.1 CTD:66037 GeneCards:GC02M198591 H-InvDB:HIX0030239
HGNC:HGNC:14273 HPA:HPA018678 MIM:606165 neXtProt:NX_Q8N9W6
PharmGKB:PA25397 eggNOG:NOG260394 HOGENOM:HOG000095250
HOVERGEN:HBG048761 OrthoDB:EOG4MPHQQ GenomeRNAi:66037 NextBio:67546
ArrayExpress:Q8N9W6 Bgee:Q8N9W6 CleanEx:HS_BOLL
Genevestigator:Q8N9W6 GermOnline:ENSG00000152430 GO:GO:0045948
Uniprot:Q8N9W6
Length = 283
Score = 111 (44.1 bits), Expect = 0.00049, P = 0.00049
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+++ + NE LR+ FS +G V +V++V DRA + +G G+V F+T+ DA+K
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQK 88
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 113 (44.8 bits), Expect = 0.00051, P = 0.00051
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 214
Query: 171 DG 172
+G
Sbjct: 215 NG 216
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 113 (44.8 bits), Expect = 0.00052, P = 0.00052
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGL 214
Query: 171 DG 172
+G
Sbjct: 215 NG 216
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 113 (44.8 bits), Expect = 0.00052, P = 0.00052
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 171 DG 172
+G
Sbjct: 216 NG 217
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 113 (44.8 bits), Expect = 0.00052, P = 0.00052
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 156 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 215
Query: 171 DG 172
+G
Sbjct: 216 NG 217
>UNIPROTKB|C1JGV6 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:DAAA02005516 EMBL:DAAA02005517 EMBL:DAAA02005518 EMBL:FJ623266
IPI:IPI00867153 UniGene:Bt.25777 Ensembl:ENSBTAT00000044801
Uniprot:C1JGV6
Length = 295
Score = 111 (44.1 bits), Expect = 0.00053, P = 0.00053
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+++ + NE LR+ FS +G V +V++V DRA + +G G+V F+T+ DA+K
Sbjct: 47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQK 100
>UNIPROTKB|F1P6I8 [details] [associations]
symbol:BOLL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] [GO:0008494 "translation activator
activity" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AAEX03017986 Ensembl:ENSCAFT00000037605 Uniprot:F1P6I8
Length = 295
Score = 111 (44.1 bits), Expect = 0.00053, P = 0.00053
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+++ + NE LR+ FS +G V +V++V DRA + +G G+V F+T+ DA+K
Sbjct: 47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQK 100
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 113 (44.8 bits), Expect = 0.00054, P = 0.00054
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 167 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 226
Query: 171 DG 172
+G
Sbjct: 227 NG 228
>UNIPROTKB|A4RHN3 [details] [associations]
symbol:TIF35 "Eukaryotic translation initiation factor 3
subunit G" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR017334 Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003743 EMBL:CM001232 eggNOG:COG0724 KO:K03248 HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353
RefSeq:XP_003715298.1 ProteinModelPortal:A4RHN3 STRING:A4RHN3
GeneID:2682994 KEGG:mgr:MGG_07109 OrthoDB:EOG4QJVX7 Uniprot:A4RHN3
Length = 303
Score = 111 (44.1 bits), Expect = 0.00056, P = 0.00056
Identities = 27/70 (38%), Positives = 36/70 (51%)
Query: 105 ENDSLV-LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADA 163
E D L L + ++S E LR++F FG V V L DR L +G ++ F R DA
Sbjct: 218 ERDDLATLRVTNVSEMAEEQELRDMFERFGRVTRVFLAKDRDTGLAKGFAFISFADREDA 277
Query: 164 EKAQLYMDGF 173
KA MDG+
Sbjct: 278 VKACNKMDGW 287
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 112 (44.5 bits), Expect = 0.00057, P = 0.00057
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 132 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 191
Query: 171 DG 172
+G
Sbjct: 192 NG 193
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 102 (41.0 bits), Expect = 0.00060, P = 0.00060
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAE 164
E D ++I LS + + L++ FS FGEVVD L +D RG G+V FK +
Sbjct: 74 EEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVD 133
Query: 165 K 165
K
Sbjct: 134 K 134
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 112 (44.5 bits), Expect = 0.00062, P = 0.00062
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 171 DG 172
+G
Sbjct: 194 NG 195
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 112 (44.5 bits), Expect = 0.00062, P = 0.00062
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 171 DG 172
+G
Sbjct: 194 NG 195
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 91 (37.1 bits), Expect = 0.00062, P = 0.00062
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
+++ L + + LR+ F FG++ + ++ DR RG G+V RA AE+A
Sbjct: 13 IFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERA 68
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 91 (37.1 bits), Expect = 0.00062, P = 0.00062
Identities = 24/63 (38%), Positives = 37/63 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMD-RAVNLPRGSGYVRFKTRADAEKAQLY 169
LYI +L V+E L +FS+FG+V+ L D R + RG ++ F++ A +A L+
Sbjct: 19 LYIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGES--RGFAFIEFESADSAGRAMLH 76
Query: 170 MDG 172
MDG
Sbjct: 77 MDG 79
>MGI|MGI:1922638 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0007126
"meiosis" evidence=ISO] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=ISO] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0045948 "positive regulation of translational initiation"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1922638 GO:GO:0007275
GO:GO:0005737 GO:GO:0030154 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 CTD:66037
eggNOG:NOG260394 HOGENOM:HOG000095250 HOVERGEN:HBG048761
OrthoDB:EOG4MPHQQ EMBL:AF272859 EMBL:AK016125 EMBL:BY103870
IPI:IPI00403643 IPI:IPI00886395 RefSeq:NP_001106838.1
RefSeq:NP_083543.2 UniGene:Mm.483408 ProteinModelPortal:Q924M5
SMR:Q924M5 STRING:Q924M5 PhosphoSite:Q924M5 PRIDE:Q924M5
DNASU:75388 Ensembl:ENSMUST00000159398 GeneID:75388 KEGG:mmu:75388
UCSC:uc007bal.1 UCSC:uc007bam.1 GeneTree:ENSGT00530000063480
InParanoid:Q924M5 NextBio:342892 Bgee:Q924M5 CleanEx:MM_BOLL
Genevestigator:Q924M5 GermOnline:ENSMUSG00000025977 Uniprot:Q924M5
Length = 281
Score = 110 (43.8 bits), Expect = 0.00063, P = 0.00063
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+++ + NE LR+ FS +G V +V++V DRA + +G G++ F+T+ DA+K
Sbjct: 35 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFITFETQEDAQK 88
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 112 (44.5 bits), Expect = 0.00063, P = 0.00063
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G VV+V L+ DR N RG +V F++ ADA+ A +
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 112 (44.5 bits), Expect = 0.00063, P = 0.00063
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 171 DG 172
+G
Sbjct: 199 NG 200
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 112 (44.5 bits), Expect = 0.00063, P = 0.00063
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 171 DG 172
+G
Sbjct: 199 NG 200
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 112 (44.5 bits), Expect = 0.00064, P = 0.00064
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ SL N+ E LR IF FG + ++L+MD +G G++ F A+KA +
Sbjct: 95 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 154
Query: 171 DGF 173
+GF
Sbjct: 155 NGF 157
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 112 (44.5 bits), Expect = 0.00064, P = 0.00064
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 112 (44.5 bits), Expect = 0.00064, P = 0.00064
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 112 (44.5 bits), Expect = 0.00064, P = 0.00064
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G VV+V L+ DR N RG +V F++ ADA+ A +
Sbjct: 10 LFIGGLNTETNEKALEAVFCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 111 (44.1 bits), Expect = 0.00065, P = 0.00065
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L R + + + ++F FG +++ +++D+A L RG ++RF R++AE+A
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 171 DGFHR 175
+G H+
Sbjct: 168 NG-HK 171
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 111 (44.1 bits), Expect = 0.00065, P = 0.00065
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L R + + + ++F FG +++ +++D+A L RG ++RF R++AE+A
Sbjct: 108 LYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 167
Query: 171 DGFHR 175
+G H+
Sbjct: 168 NG-HK 171
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 107 (42.7 bits), Expect = 0.00065, P = 0.00065
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 112 (44.5 bits), Expect = 0.00066, P = 0.00066
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 171 DG 172
+G
Sbjct: 194 NG 195
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 112 (44.5 bits), Expect = 0.00066, P = 0.00066
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 134 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 193
Query: 171 DG 172
+G
Sbjct: 194 NG 195
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 112 (44.5 bits), Expect = 0.00066, P = 0.00066
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 150 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 209
Query: 171 DG 172
+G
Sbjct: 210 NG 211
>ASPGD|ASPL0000001581 [details] [associations]
symbol:AN10765 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016282 "eukaryotic 43S preinitiation complex"
evidence=IEA] [GO:0071541 "eukaryotic translation initiation factor
3 complex, eIF3m" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0071540 "eukaryotic translation initiation factor 3 complex,
eIF3e" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR017334
Pfam:PF00076 PIRSF:PIRSF037949 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001301
GO:GO:0003743 HSSP:O75821 OMA:SNLSEAM HAMAP:MF_03006
InterPro:IPR024675 PANTHER:PTHR10352 Pfam:PF12353 EMBL:AACD01000103
ProteinModelPortal:C8V330 STRING:Q5B0B3
EnsemblFungi:CADANIAT00007002 Uniprot:C8V330
Length = 289
Score = 110 (43.8 bits), Expect = 0.00066, P = 0.00066
Identities = 26/70 (37%), Positives = 36/70 (51%)
Query: 105 ENDSLV-LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADA 163
E D L L + ++S E LR++F FG V V L DR +G ++ F R+DA
Sbjct: 204 EKDDLATLRVTNVSELAEEQELRDLFERFGRVTRVFLARDRETQRAKGFAFISFADRSDA 263
Query: 164 EKAQLYMDGF 173
+A MDGF
Sbjct: 264 ARACDKMDGF 273
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 112 (44.5 bits), Expect = 0.00067, P = 0.00067
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 138 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 197
Query: 171 DG 172
+G
Sbjct: 198 NG 199
>UNIPROTKB|E2RBE5 [details] [associations]
symbol:NCBP2L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000339 "RNA cap binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:GFREGQQ PANTHER:PTHR18847 GeneTree:ENSGT00390000003197
EMBL:AAEX03026753 Ensembl:ENSCAFT00000028568 Uniprot:E2RBE5
Length = 163
Score = 103 (41.3 bits), Expect = 0.00067, P = 0.00067
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
DS LY+ +LS E + E+FS G+V +V + +D+ G ++ + R DAE A
Sbjct: 39 DSSTLYVGNLSFYTTEEQIYELFSRCGDVKNVFMGLDKIKKTACGFCFIEYHNRFDAENA 98
Query: 167 QLYMDG 172
L+++G
Sbjct: 99 MLFLNG 104
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 112 (44.5 bits), Expect = 0.00067, P = 0.00067
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 171 DG 172
+G
Sbjct: 199 NG 200
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 112 (44.5 bits), Expect = 0.00067, P = 0.00067
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 139 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 198
Query: 171 DG 172
+G
Sbjct: 199 NG 200
>UNIPROTKB|F2Z2G3 [details] [associations]
symbol:BOLL "Protein boule-like" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC011997
HGNC:HGNC:14273 IPI:IPI01018166 ProteinModelPortal:F2Z2G3
SMR:F2Z2G3 Ensembl:ENST00000430004 OMA:YQAPAQC ArrayExpress:F2Z2G3
Bgee:F2Z2G3 Uniprot:F2Z2G3
Length = 333
Score = 111 (44.1 bits), Expect = 0.00067, P = 0.00067
Identities = 21/55 (38%), Positives = 36/55 (65%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+++ + NE LR+ FS +G V +V++V DRA + +G G+V F+T+ DA+K
Sbjct: 35 IFVGGIDFKTNESDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFVTFETQEDAQK 88
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 114 (45.2 bits), Expect = 0.00068, P = 0.00068
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI+ L +V +L+E+F +FG+V+D +++ D R G+V F R +A KA M
Sbjct: 199 LYINRLEPHVTNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSM 258
Query: 171 DG 172
+G
Sbjct: 259 NG 260
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 112 (44.5 bits), Expect = 0.00068, P = 0.00068
Identities = 18/62 (29%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + + + L ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 155 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
Query: 171 DG 172
+G
Sbjct: 215 NG 216
>RGD|1559527 [details] [associations]
symbol:Boll "bol, boule-like (Drosophila)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0007126 "meiosis"
evidence=IEA;ISO] [GO:0008494 "translation activator activity"
evidence=IEA;ISO] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559527
GO:GO:0007126 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0008494 CTD:66037 OrthoDB:EOG4MPHQQ GO:GO:0045948
GeneTree:ENSGT00530000063480 EMBL:CH473965 EMBL:AC103419
EMBL:AC122091 IPI:IPI00884580 RefSeq:NP_001106841.1
RefSeq:XP_003750748.1 UniGene:Rn.145717 Ensembl:ENSRNOT00000021299
GeneID:100911373 GeneID:501143 KEGG:rno:100911373 KEGG:rno:501143
UCSC:RGD:1559527 NextBio:708414 Uniprot:D4ACT7
Length = 293
Score = 110 (43.8 bits), Expect = 0.00068, P = 0.00068
Identities = 20/55 (36%), Positives = 36/55 (65%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
+++ + NE LR+ FS +G V +V++V DRA + +G G++ F+T+ DA+K
Sbjct: 47 IFVGGIDFKTNENDLRKFFSQYGSVKEVKIVNDRA-GVSKGYGFITFETQEDAQK 100
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 111 (44.1 bits), Expect = 0.00069, P = 0.00069
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L R + + + ++F FG +++ +++D+A L RG ++RF R++AE+A
Sbjct: 119 LYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASF 178
Query: 171 DGFHR 175
+G H+
Sbjct: 179 NG-HK 182
>UNIPROTKB|F1NJ86 [details] [associations]
symbol:LARP7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR002344 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00302
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0003723 GO:GO:0006396 GO:GO:0030529 InterPro:IPR006630
PROSITE:PS50961 Pfam:PF05383 SMART:SM00715
GeneTree:ENSGT00530000063464 EMBL:AADN02009328 IPI:IPI00598515
Ensembl:ENSGALT00000032138 ArrayExpress:F1NJ86 Uniprot:F1NJ86
Length = 233
Score = 108 (43.1 bits), Expect = 0.00069, P = 0.00069
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 107 DSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
DS +Y++ L +NVN + +F G VV V + ++ P+G +V F+T+ AEKA
Sbjct: 125 DSRTVYVELLPKNVNHSWIERVFGKCGNVVYVSIPRYKSTGDPKGFAFVEFETKEQAEKA 184
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 109 (43.4 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V++ L+ DR N RG +V F++ ADA+ M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 138 SSSRGPLPVKRGPPPRSGG 156
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 109 (43.4 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L+I L+ NE L +F +G +V++ L+ DR N RG +V F++ ADA+ M
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 171 DG 172
+G
Sbjct: 70 NG 71
Score = 40 (19.1 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 204 NDQENPLPVG-SHPPRHGG 221
+ PLPV PPR GG
Sbjct: 138 SSSRGPLPVKRGPPPRSGG 156
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 113 (44.8 bits), Expect = 0.00075, P = 0.00075
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAE 164
++D+ L+I +S + NE L+E FS+FGEV++ ++ DR RG G+V F A AE
Sbjct: 2 QSDNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 107 (42.7 bits), Expect = 0.00078, P = 0.00078
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
L +D+L+ + LR +F +G V DV + DR RG +VRF + DAE A M
Sbjct: 16 LKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAM 75
Query: 171 DG 172
DG
Sbjct: 76 DG 77
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 112 (44.5 bits), Expect = 0.00078, P = 0.00078
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ SL N+ E LR IF FG + ++L+MD +G G++ F A+KA +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 171 DGF 173
+GF
Sbjct: 312 NGF 314
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 111 (44.1 bits), Expect = 0.00080, P = 0.00080
Identities = 17/62 (27%), Positives = 39/62 (62%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + +++ + ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 111 (44.1 bits), Expect = 0.00080, P = 0.00080
Identities = 17/62 (27%), Positives = 39/62 (62%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + +++ + ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 111 (44.1 bits), Expect = 0.00080, P = 0.00080
Identities = 17/62 (27%), Positives = 39/62 (62%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + +++ + ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 111 (44.1 bits), Expect = 0.00080, P = 0.00080
Identities = 17/62 (27%), Positives = 39/62 (62%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L + +++ + ++FS +G ++ +++D+ + RG G++RF R +AE+A +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 171 DG 172
+G
Sbjct: 187 NG 188
>DICTYBASE|DDB_G0288291 [details] [associations]
symbol:DDB_G0288291 "putative RNA-binding protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0288291 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000109 eggNOG:COG0724
RefSeq:XP_636795.1 ProteinModelPortal:Q54J52
EnsemblProtists:DDB0187876 GeneID:8626552 KEGG:ddi:DDB_G0288291
InParanoid:Q54J52 OMA:NMHESEI ProtClustDB:CLSZ2429905
Uniprot:Q54J52
Length = 123
Score = 90 (36.7 bits), Expect = 0.00081, P = 0.00081
Identities = 24/69 (34%), Positives = 33/69 (47%)
Query: 106 NDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEK 165
N VLY+ +S +V LR F FG + DV L MD +G G++ F+ DA
Sbjct: 12 NKKNVLYVGGISDDVTIDILRAAFIPFGNINDVILPMDHKTQKLKGFGFIDFELPEDAAD 71
Query: 166 AQLYMDGFH 174
A +D H
Sbjct: 72 A---LDNMH 77
>GENEDB_PFALCIPARUM|PF14_0057 [details] [associations]
symbol:PF14_0057 "RNA binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 90 (36.7 bits), Expect = 0.00081, P = 0.00081
Identities = 15/63 (23%), Positives = 36/63 (57%)
Query: 110 VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLY 169
++ I ++ + +++E+F FG++ ++ L +DR +G ++ ++ DA++A
Sbjct: 24 IIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDE 83
Query: 170 MDG 172
MDG
Sbjct: 84 MDG 86
>UNIPROTKB|Q8IM34 [details] [associations]
symbol:PF14_0057 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR008111
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR01738 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006396 EMBL:AE014187
HSSP:Q9V535 HOGENOM:HOG000183826 KO:K12876 OMA:NIHEEAT
RefSeq:XP_001348230.1 ProteinModelPortal:Q8IM34 SMR:Q8IM34
EnsemblProtists:PF14_0057:mRNA GeneID:811639 KEGG:pfa:PF14_0057
EuPathDB:PlasmoDB:PF3D7_1406000 ProtClustDB:CLSZ2446706
Uniprot:Q8IM34
Length = 107
Score = 90 (36.7 bits), Expect = 0.00081, P = 0.00081
Identities = 15/63 (23%), Positives = 36/63 (57%)
Query: 110 VLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLY 169
++ I ++ + +++E+F FG++ ++ L +DR +G ++ ++ DA++A
Sbjct: 24 IIIITNIHGEARDDYIKEVFERFGQIKNLHLNIDRRTGFLKGYAFLEYENFVDAKRAIDE 83
Query: 170 MDG 172
MDG
Sbjct: 84 MDG 86
>ZFIN|ZDB-GENE-070620-21 [details] [associations]
symbol:zgc:165603 "zgc:165603" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070620-21 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CABZ01080723 EMBL:CABZ01080724 EMBL:CABZ01080725
EMBL:CABZ01080726 EMBL:CABZ01080727 EMBL:BC142894 IPI:IPI00851471
RefSeq:NP_001092221.1 UniGene:Dr.154402 SMR:A5PLG5
Ensembl:ENSDART00000105482 GeneID:571425 KEGG:dre:571425
eggNOG:KOG0146 HOGENOM:HOG000286011 HOVERGEN:HBG090495 OMA:DGHESSP
NextBio:20890554 Uniprot:A5PLG5
Length = 155
Score = 101 (40.6 bits), Expect = 0.00088, P = 0.00088
Identities = 18/63 (28%), Positives = 37/63 (58%)
Query: 105 ENDSLVLYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAE 164
+ D++ L+I + RN+ E L+ +F FG++ ++ ++ DR + +G ++ + R A
Sbjct: 78 DQDAIKLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAI 137
Query: 165 KAQ 167
KAQ
Sbjct: 138 KAQ 140
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 110 (43.8 bits), Expect = 0.00091, P = 0.00091
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LYI L + + + + E+F +G +++ +++D+A L RG ++RF RA+AE A +
Sbjct: 122 LYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDL 181
Query: 171 DG 172
+G
Sbjct: 182 NG 183
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 109 (43.4 bits), Expect = 0.00098, P = 0.00098
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKA 166
++I L ++ E HLR+ FS FG V E++ D+ RG G+V F+ A+KA
Sbjct: 103 IFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKA 158
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 110 (43.8 bits), Expect = 0.00099, P = 0.00098
Identities = 19/62 (30%), Positives = 39/62 (62%)
Query: 111 LYIDSLSRNVNEGHLREIFSNFGEVVDVELVMDRAVNLPRGSGYVRFKTRADAEKAQLYM 170
LY+ L +N+++ L +F++FG+++ ++ D L +G G++RF R +AE+A +
Sbjct: 132 LYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQEL 191
Query: 171 DG 172
+G
Sbjct: 192 NG 193
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.142 0.423 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 385 248 0.00079 114 3 11 22 0.42 33
32 0.46 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 205
No. of states in DFA: 586 (62 KB)
Total size of DFA: 174 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.45u 0.11s 17.56t Elapsed: 00:00:01
Total cpu time: 17.46u 0.11s 17.57t Elapsed: 00:00:01
Start: Mon May 20 19:14:33 2013 End: Mon May 20 19:14:34 2013
WARNINGS ISSUED: 1